BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780995|ref|YP_003065408.1|
Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter
asiaticus str. psy62]
(125 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780995|ref|YP_003065408.1| Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040672|gb|ACT57468.1| Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 125
Score = 101 bits (250), Expect = 4e-20, Method: Composition-based stats.
Identities = 125/125 (100%), Positives = 125/125 (100%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE
Sbjct: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF
Sbjct: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
Query: 121 EKGNV 125
EKGNV
Sbjct: 121 EKGNV 125
>gi|124267258|ref|YP_001021262.1| exodeoxyribonuclease III [Methylibium petroleiphilum PM1]
gi|124260033|gb|ABM95027.1| Exodeoxyribonuclease III [Methylibium petroleiphilum PM1]
Length = 256
Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ L+ W ++ V+ GDFN D +
Sbjct: 124 QALRDWVRSELAAHPRLVLMGDFNIAPEDRDVHDPVLWAGQIHCTPQEREHFRELIALGL 183
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q +S RN + + D+ ++ + L + +
Sbjct: 184 VDAFRLFEQPPKSWSWWDYRNLAFRKNQGLRIDHILVSEALRPAVSACMIDKLPRKNERP 243
Query: 109 STHCPLTIEYD 119
S H P+ +E
Sbjct: 244 SDHAPVVVELS 254
>gi|121999062|ref|YP_001003849.1| exodeoxyribonuclease III Xth [Halorhodospira halophila SL1]
gi|121590467|gb|ABM63047.1| Exodeoxyribonuclease III [Halorhodospira halophila SL1]
Length = 267
Score = 93.7 bits (231), Expect = 7e-18, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 36/131 (27%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
E L W ++++ V+ GDFN + D +
Sbjct: 124 EALHHWVARELEAHEHVVVLGDFNIAPQAADVHDPAEWEGKVLFSQSERDALRGLLNLGL 183
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q + R S + D + + V+ R +
Sbjct: 184 VDTFRLFEQPEGQFSWWDYRVNSFKRNRGLRIDLILASSALARACVASRVDVEPRRWERP 243
Query: 109 STHCPLTIEYD 119
S H P+ E+D
Sbjct: 244 SDHAPVVAEFD 254
>gi|121605670|ref|YP_982999.1| exodeoxyribonuclease III Xth [Polaromonas naphthalenivorans CJ2]
gi|120594639|gb|ABM38078.1| Exodeoxyribonuclease III [Polaromonas naphthalenivorans CJ2]
Length = 260
Score = 93.7 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
E L+ W +++ V+ GDFN + D K+
Sbjct: 128 ESLRNWLREELAEHPNLVLLGDFNITADDRDSYDPEGLRETIHHTSEERQHFQALVKLGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ F Q ++S R + + D+ + S L + +
Sbjct: 188 NDAFRMFDQPEKSYSWWDYREMAFRRNRGLRIDHILVSEALKPLVRSCVIDKLPRKNERP 247
Query: 109 STHCPLTIEYDF 120
S H P+ +E D
Sbjct: 248 SDHVPVVLELDL 259
>gi|303258098|ref|ZP_07344106.1| exodeoxyribonuclease III [Burkholderiales bacterium 1_1_47]
gi|330998688|ref|ZP_08322417.1| exodeoxyribonuclease III [Parasutterella excrementihominis YIT
11859]
gi|302859117|gb|EFL82200.1| exodeoxyribonuclease III [Burkholderiales bacterium 1_1_47]
gi|329576427|gb|EGG57939.1| exodeoxyribonuclease III [Parasutterella excrementihominis YIT
11859]
Length = 265
Score = 93.0 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
E L +W +++ V+ GDFN D +
Sbjct: 134 EALAEWLPSQLEQYPNLVLLGDFNIAPEDRDVWDPESWAESVLCTPKAREAFQRLIDLGL 193
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + + D+ + + +
Sbjct: 194 TDSFRAFEQPEKSYSWWDYRMMAFRRNRGLRIDHILISKALVSKNLGVEIHKKVRGNERP 253
Query: 109 STHCPLTIEYDF 120
S H P+T+ D
Sbjct: 254 SDHAPVTLTLDL 265
>gi|82703533|ref|YP_413099.1| exodeoxyribonuclease III [Nitrosospira multiformis ATCC 25196]
gi|82411598|gb|ABB75707.1| Exodeoxyribonuclease III [Nitrosospira multiformis ATCC 25196]
Length = 277
Score = 93.0 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------DFWQKMDPD----------- 49
L++W + + V+ GDFN D + +++
Sbjct: 125 ALREWLREMLSRHRKLVVLGDFNIAPEDCDVHDSKLWEGKVLFSELERAAFREVLDLGFI 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q ++S R + + D+ + + + R + S
Sbjct: 185 DSFRLFDQPEKSFTWWDYRMMAFRRNMGLRIDHILLSRELAGMCTACVIDKATRRLERPS 244
Query: 110 THCPLTIEY 118
H P+ +E
Sbjct: 245 DHAPVIVEL 253
>gi|86605184|ref|YP_473947.1| exodeoxyribonuclease III [Synechococcus sp. JA-3-3Ab]
gi|86553726|gb|ABC98684.1| exodeoxyribonuclease III [Synechococcus sp. JA-3-3Ab]
Length = 261
Score = 92.6 bits (228), Expect = 1e-17, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 30/127 (23%), Gaps = 17/127 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-----------------MDPDGL 51
LK + + G P ++ GDFN D + +
Sbjct: 133 LKDYLQVALDQGQPILLCGDFNIAPEDRDIYDPGKAGEIMASEPERQALQKILALGFEDA 192
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+F + R D+ + R K S H
Sbjct: 193 FRKFNPDPGHFSWWDYRGGGFQKNRGWRIDHLYLSPLLQDKATACWIDVEPRRAEKPSDH 252
Query: 112 CPLTIEY 118
P+ +E
Sbjct: 253 APVVVEL 259
>gi|291615383|ref|YP_003525540.1| exodeoxyribonuclease III Xth [Sideroxydans lithotrophicus ES-1]
gi|291585495|gb|ADE13153.1| exodeoxyribonuclease III Xth [Sideroxydans lithotrophicus ES-1]
Length = 252
Score = 92.6 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 20/128 (15%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
+ W +++ + GD+N D ++
Sbjct: 125 AITAWLKEELAKHPRLALLGDYNIAPEDRDVHDPVAWQGNVLVSAPERDAFKALLQLGLR 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q ++S R + + LI + + + + S
Sbjct: 185 DAFRLFEQAEKSYSWWDYRMMAFRRNMG--LRIDHILISPALQCSACHIDKAPRKLERPS 242
Query: 110 THCPLTIE 117
H P+ E
Sbjct: 243 DHTPVVAE 250
>gi|239814644|ref|YP_002943554.1| exodeoxyribonuclease III Xth [Variovorax paradoxus S110]
gi|239801221|gb|ACS18288.1| exodeoxyribonuclease III Xth [Variovorax paradoxus S110]
Length = 261
Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 35/131 (26%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
L++W ++ V+ GDFN D ++
Sbjct: 128 RALREWLRAEMAAHPNLVLLGDFNIAPEDRDSFDPVGLAETIHHTTEEREHFKALLQLGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + D+ + + + K
Sbjct: 188 VDSFRLFEQPEKSFSWWDYRMLGYQKNRGLRIDHILVSEPLVPRVKGCIIDRVPRKWEKP 247
Query: 109 STHCPLTIEYD 119
S H P+ ++ D
Sbjct: 248 SDHAPVVLDLD 258
>gi|319792482|ref|YP_004154122.1| exodeoxyribonuclease iii xth [Variovorax paradoxus EPS]
gi|315594945|gb|ADU36011.1| exodeoxyribonuclease III Xth [Variovorax paradoxus EPS]
Length = 261
Score = 91.8 bits (226), Expect = 2e-17, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
+ L+ W Q++ V+ GDFN D +
Sbjct: 128 DALRDWLRQELVAHPNLVLLGDFNITPEDRDSFDPVGLKETIHHTTEEREHFKALLGLGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + D+ + + + K
Sbjct: 188 TDSFRMFEQPEKSYSWWDYRMLGYQKNRGLRIDHILVSETLLPRVKGCIIDRVPRKWEKP 247
Query: 109 STHCPLTIEY 118
S H P+ ++
Sbjct: 248 SDHAPVVLDL 257
>gi|293604886|ref|ZP_06687283.1| exodeoxyribonuclease III [Achromobacter piechaudii ATCC 43553]
gi|292816714|gb|EFF75798.1| exodeoxyribonuclease III [Achromobacter piechaudii ATCC 43553]
Length = 260
Score = 91.4 bits (225), Expect = 3e-17, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
E +++W ++IK + GD+N + +
Sbjct: 128 EAMREWLAEEIKQYPRLAVLGDYNVAPADEDVHNPEKWEGHVLVSEPERAALRALLDLGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + + D+ V+ R +
Sbjct: 188 TDSFRLFEQPEKSFSWWDYRQFAFRRNAGLRIDHVLLSAPLVKRCVACVIDKEPRRNEQP 247
Query: 109 STHCPLTIEYDF 120
S H P+ +F
Sbjct: 248 SDHAPVVATLEF 259
>gi|171057931|ref|YP_001790280.1| exodeoxyribonuclease III Xth [Leptothrix cholodnii SP-6]
gi|170775376|gb|ACB33515.1| exodeoxyribonuclease III Xth [Leptothrix cholodnii SP-6]
Length = 254
Score = 91.0 bits (224), Expect = 4e-17, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
L+ W ++ V+ GDFN D +
Sbjct: 125 ALEAWLQTELAAHTQLVLMGDFNIAPEDRDVYDPVAWAGQIHCTPEERAHFQALVGLGLV 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q +S RN + + D+ + + + + S
Sbjct: 185 DAFRLFEQPPKSWSWWDYRNLAFRKNQGLRIDHVLVGEALKARVTACQIDKAPRKNERPS 244
Query: 110 THCPLTIEY 118
H P+ +E
Sbjct: 245 DHAPVWVEL 253
>gi|332284249|ref|YP_004416160.1| putative exodeoxyribonuclease III [Pusillimonas sp. T7-7]
gi|330428202|gb|AEC19536.1| putative exodeoxyribonuclease III [Pusillimonas sp. T7-7]
Length = 262
Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 38/134 (28%), Gaps = 18/134 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
L++W +Q+++ I GD+N ++ D +
Sbjct: 129 ALQEWLEQELQRYPRLAILGDYNVAPHNDDVHDPKKWEGDVLVSEPERAAFNALLSLGLT 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F QE++S R + + D+ + + S
Sbjct: 189 DSFREFEQEEKSFTWWDYRRFAFRRNAGLRIDHVLLSDALKPYCSACVIDKAPRNNEQPS 248
Query: 110 THCPLTIEYDFEKG 123
H P+ DF +
Sbjct: 249 DHTPVIATLDFNRS 262
>gi|257092446|ref|YP_003166087.1| exodeoxyribonuclease III Xth [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257044970|gb|ACV34158.1| exodeoxyribonuclease III Xth [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 255
Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDP--- 48
+ L +W ++ V+AGDFN + +Q++
Sbjct: 124 DALTRWLKGRLAANPRLVVAGDFNIAPEDRDVYNPAAWAGQILCSAPERAAFQRLLDLGL 183
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + D+ + + + +
Sbjct: 184 KDSFRLFEQPEKSFSWWDYRMLGFQKNQGLRIDHILLSEPLAGICTVAGINRHMRKLERP 243
Query: 109 STHCPLTIEY 118
S H P+T E
Sbjct: 244 SDHAPVTAEL 253
>gi|78778870|ref|YP_396982.1| exodeoxyribonuclease III [Prochlorococcus marinus str. MIT 9312]
gi|78712369|gb|ABB49546.1| Exodeoxyribonuclease III [Prochlorococcus marinus str. MIT 9312]
Length = 281
Score = 90.7 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 18/135 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------WQKMDPD------G 50
L + D++ K G + GDFN +++ D ++
Sbjct: 135 LASYLDEQEKKGELICLMGDFNVAPSNLDIYDPKKYEGGIMASEIERNALNNVLKERLID 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + RN + D+ + S + S + S
Sbjct: 195 SFRIFEKNPGHWSWWDYRNNAYELNKGWRIDHIYISKELSSKLKSCVIDSSPRANLRPSD 254
Query: 111 HCPLTIEYDFEKGNV 125
H P+ I+ + NV
Sbjct: 255 HAPVMIDLNLNDINV 269
>gi|56476029|ref|YP_157618.1| exodeoxyribonuclease III [Aromatoleum aromaticum EbN1]
gi|56312072|emb|CAI06717.1| Exodeoxyribonuclease III [Aromatoleum aromaticum EbN1]
Length = 253
Score = 90.7 bits (223), Expect = 6e-17, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 16/129 (12%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDT----------------DDFWQKMDPDGL 51
L +W +++K V+ GDFN +
Sbjct: 125 ALTEWLREELKAHQRLVLTGDFNIAPEDRDAHPDWKDEIHVSPAERAAFAALTGLGLADA 184
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
FPQ+ +S R + F + D+ + + + S H
Sbjct: 185 YRLFPQDDKSFSWWDYRMGAFRRNFGLRIDHILLSPALRDVCCACTIDKAPRKLERPSDH 244
Query: 112 CPLTIEYDF 120
P+ E +
Sbjct: 245 APVIAELEL 253
>gi|300312415|ref|YP_003776507.1| exodeoxyribonuclease III protein [Herbaspirillum seropedicae SmR1]
gi|300075200|gb|ADJ64599.1| exodeoxyribonuclease III protein [Herbaspirillum seropedicae SmR1]
Length = 255
Score = 90.3 bits (222), Expect = 7e-17, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 30/129 (23%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L +W Q+ + GD+N D Q +
Sbjct: 125 ALHEWLAQEKAKNPRLALLGDYNIAPEDRDVHDPVAWQGQVLVSEPEREAFRKLQALGLT 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q ++ R + D+ + + + + + S
Sbjct: 185 DSYRLFEQPEKMYSWWDYRQMGFRLNRGLRIDHILLSEELVPRCTACVIDKVPRKWEQPS 244
Query: 110 THCPLTIEY 118
H P+
Sbjct: 245 DHAPVIATL 253
>gi|237745581|ref|ZP_04576061.1| exodeoxyribonuclease III [Oxalobacter formigenes HOxBLS]
gi|229376932|gb|EEO27023.1| exodeoxyribonuclease III [Oxalobacter formigenes HOxBLS]
Length = 255
Score = 90.3 bits (222), Expect = 7e-17, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 37/132 (28%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDP--- 48
+ L W ++ K + GD+N D ++ +
Sbjct: 124 KALHAWLLEEKKKYPYLALLGDYNIAPEDRDVYDPAAWEGNVLVSEPERAAFRALLDIGF 183
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q +++ R + + D+ + + + + + +
Sbjct: 184 VDAFRLFSQPEKTYSWWDYRQLAFPRNRGLRLDHILLSENLAPHCTACTIDRMPRKWKQP 243
Query: 109 STHCPLTIEYDF 120
S H P+ E +
Sbjct: 244 SDHTPVIAELEL 255
>gi|254413694|ref|ZP_05027463.1| exodeoxyribonuclease III [Microcoleus chthonoplastes PCC 7420]
gi|196179291|gb|EDX74286.1| exodeoxyribonuclease III [Microcoleus chthonoplastes PCC 7420]
Length = 264
Score = 90.3 bits (222), Expect = 8e-17, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 36/132 (27%), Gaps = 19/132 (14%)
Query: 7 EWLKKWADQKIKTGIP-FVIAGDFNRKINSIGDTDDFWQK------------------MD 47
+ LK++ ++T I GDFN + + + +
Sbjct: 132 KLLKEYVRSLLETQPHELCICGDFNIAPDDRDIHNPKNKDKHIMASPAERQALEEVLALG 191
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+F Q+ R+ D+ + + K
Sbjct: 192 LGDAFRKFTQDGGHFSWWDYRHGGFSRNRGWRIDHHYLTPKLYEAATRCRIDVEPRKLEK 251
Query: 108 LSTHCPLTIEYD 119
S H P+ +E++
Sbjct: 252 PSDHAPVIVEFE 263
>gi|221066056|ref|ZP_03542161.1| exodeoxyribonuclease III Xth [Comamonas testosteroni KF-1]
gi|220711079|gb|EED66447.1| exodeoxyribonuclease III Xth [Comamonas testosteroni KF-1]
Length = 258
Score = 90.3 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W +++ V+ GDFN D ++
Sbjct: 128 QALQDWVKEQMALHPRLVLVGDFNVAPEDRDSYDPVGLKDTIHHTVQERDHFQRLLQLGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + D+ + + + +
Sbjct: 188 SDAFRMFEQPEKSYSWWDYRMLGFQKNRGLRIDHILVSEALRSKVSACSVDRAPRKNKQP 247
Query: 109 STHCPLTIEYD 119
S H P+ + D
Sbjct: 248 SDHAPVIVTLD 258
>gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040680|gb|ACT57476.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 304
Score = 90.3 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 67/122 (54%), Positives = 92/122 (75%), Gaps = 2/122 (1%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+LSQQ +WLK W QK ++ +PFVIAGDFNRKIN +G+ DDFW+ +DP+ LIRFP+EK+
Sbjct: 183 LLSQQAQWLKDWITQKKESLVPFVIAGDFNRKINYLGNNDDFWKTIDPNDSLIRFPKEKD 242
Query: 61 STCNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S CN K RNK +DYFV+D++ FLI SFS + Y++ D+ +R +LS HCP++I+Y
Sbjct: 243 SRCNANKNLRNKIPIDYFVMDQNAYKFLIQESFSEILYNEDDIKSRGKRLSDHCPISIDY 302
Query: 119 DF 120
DF
Sbjct: 303 DF 304
>gi|157412901|ref|YP_001483767.1| exodeoxyribonuclease III [Prochlorococcus marinus str. MIT 9215]
gi|157387476|gb|ABV50181.1| exodeoxyribonuclease III [Prochlorococcus marinus str. MIT 9215]
Length = 281
Score = 89.9 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 39/135 (28%), Gaps = 18/135 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------WQKMDPD------G 50
L + D++ K G + GDFN +++ D ++
Sbjct: 135 LASFLDEQEKKGELICLLGDFNVAPSNLDIHDPKKYEGGIMASEIERNALNNVLKKRLID 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q RN + D+ + S + S + S
Sbjct: 195 SFRIFEQNTGHWSWWDYRNNAFELNKGWRIDHIYISKELSSKLKSCVIDCSPRGYLRPSD 254
Query: 111 HCPLTIEYDFEKGNV 125
H P+ I+ + NV
Sbjct: 255 HAPVMIDLNLNDTNV 269
>gi|302877385|ref|YP_003845949.1| exodeoxyribonuclease III Xth [Gallionella capsiferriformans ES-2]
gi|302580174|gb|ADL54185.1| exodeoxyribonuclease III Xth [Gallionella capsiferriformans ES-2]
Length = 255
Score = 89.9 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 30/129 (23%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L W +++ V+ GD+N D +
Sbjct: 125 ALHDWLKEELVRYPKLVLLGDYNIAPEDRDVHDPAAWVGNVLVSPPERDAFKSLLALGLT 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q ++ R + D+ S + + S
Sbjct: 185 DSYRLFEQADKTFSWWDYRMMGFRRNLGMRIDHILISAPLVAQCKSCIIDKAPRKLERPS 244
Query: 110 THCPLTIEY 118
H P+ +E
Sbjct: 245 DHTPVVVEL 253
>gi|222110327|ref|YP_002552591.1| exodeoxyribonuclease iii xth [Acidovorax ebreus TPSY]
gi|221729771|gb|ACM32591.1| exodeoxyribonuclease III Xth [Acidovorax ebreus TPSY]
Length = 258
Score = 89.9 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 33/130 (25%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
E L+ W ++ V+ GDFN D +
Sbjct: 128 EALRDWLRTELAAHPRLVLVGDFNVAPEDRDSFDPVGLKDTIHHTVEERQHFQDLLGLGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + D+ S+ + + +
Sbjct: 188 TDAFRLFDQPEKSYSWWDYRMLGFQKNRGLRIDHILVSTALRPSVTACRIDRAPRKNPQP 247
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 248 SDHAPVVVSL 257
>gi|325982581|ref|YP_004294983.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. AL212]
gi|325532100|gb|ADZ26821.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. AL212]
Length = 261
Score = 89.9 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-FWQK-----------------MDPD 49
+W Q++ + GDFN D W+ +
Sbjct: 127 AFTQWLKQELIDYKRLAVLGDFNIAPEDRDVYDAELWKGKVLCSEPERSAFGNMLNLGLA 186
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q ++S R + + D+ + + V+ + + S
Sbjct: 187 DSFRLFEQPEKSYTWWDYRMLAFRRNQGLRIDHILLSEELCNACVTCAIDKTMRKLERPS 246
Query: 110 THCPLTIEY 118
H P+ +E
Sbjct: 247 DHAPVLVEL 255
>gi|119491403|ref|ZP_01623422.1| Exodeoxyribonuclease III xth [Lyngbya sp. PCC 8106]
gi|119453398|gb|EAW34561.1| Exodeoxyribonuclease III xth [Lyngbya sp. PCC 8106]
Length = 261
Score = 89.9 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDP 48
+ LK++ + ++ + GDFN + + ++ +
Sbjct: 132 KLLKEYLQKTLEKNPNICVCGDFNIALEDRDIHNPKGRENHIMASDAERQALKEILELGL 191
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+F E E R S D+ S + K
Sbjct: 192 ADAFRKFNSESEQFSWWDYRAASFPRNKGWRIDHHYLTSSLYEKAKSCIIDKTPRKLEKP 251
Query: 109 STHCPLTIEY 118
S H P+ +E+
Sbjct: 252 SDHTPVIVEF 261
>gi|163857201|ref|YP_001631499.1| putative exodeoxyribonuclease III [Bordetella petrii DSM 12804]
gi|163260929|emb|CAP43231.1| putative exodeoxyribonuclease III [Bordetella petrii]
Length = 260
Score = 89.5 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 35/132 (26%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDP--- 48
+ L+ W Q+I+T + GD+N + ++ +
Sbjct: 128 QQLRDWLAQEIQTYPRLALLGDYNVAPADEDVHNPAKWEGQVLVSEPERAAFRALLDLGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + + D+ V+ +
Sbjct: 188 ADSFRLFEQPEKSFSWWDYRQFAFRRNAGLRIDHILLSQPLVPHCVACVIDKAPRANEQP 247
Query: 109 STHCPLTIEYDF 120
S H P+
Sbjct: 248 SDHAPVVATLQL 259
>gi|311105771|ref|YP_003978624.1| exodeoxyribonuclease III 1 [Achromobacter xylosoxidans A8]
gi|310760460|gb|ADP15909.1| exodeoxyribonuclease III 1 [Achromobacter xylosoxidans A8]
Length = 260
Score = 89.5 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 34/132 (25%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
E ++ W +IK + GD+N + +
Sbjct: 128 EAMRAWLADEIKQYPRLAVLGDYNVAPADEDVHNPEKWEGQVLVSEPERKAFGALLDLGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + + D+ ++ R +
Sbjct: 188 ADSFRLFEQPEKSFSWWDYRQFAFRRNAGLRIDHVLLSAPLVKRCIACAIDKEPRRNEQP 247
Query: 109 STHCPLTIEYDF 120
S H P+ +F
Sbjct: 248 SDHAPVIATLEF 259
>gi|193222381|emb|CAL62516.2| Putative exodeoxyribonuclease III [Herminiimonas arsenicoxydans]
Length = 254
Score = 89.5 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 34/131 (25%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ L +W Q+ + + GD+N D Q+M
Sbjct: 124 KALHEWLAQEQQQHPELALLGDYNIAPEDRDVHDPAAWAGQVLVSEPERAAFVRLQEMGF 183
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++ R + D+ + + + + +
Sbjct: 184 TDAFRMFEQPEKLYSWWDYRQMGFRLNRGLRIDHILLSAPLAARCSACVIDKVPRKWEQP 243
Query: 109 STHCPLTIEYD 119
S H P+ D
Sbjct: 244 SDHTPVIATID 254
>gi|121593606|ref|YP_985502.1| exodeoxyribonuclease III Xth [Acidovorax sp. JS42]
gi|120605686|gb|ABM41426.1| exodeoxyribonuclease III Xth [Acidovorax sp. JS42]
Length = 258
Score = 89.5 bits (220), Expect = 1e-16, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 33/130 (25%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
E L+ W ++ V+ GDFN D +
Sbjct: 128 EALRDWLRTELAAHPRLVLVGDFNVAPEDRDSFDPVGLKDTIHHTVEERQHFQDLLGLGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + D+ S+ + + +
Sbjct: 188 TDAFRLFDQPEKSYSWWDYRMLGFQKNRGLRIDHILVSAALRPSVTACRIDRAPRKNPQP 247
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 248 SDHAPVVVSL 257
>gi|123968077|ref|YP_001008935.1| exodeoxyribonuclease III [Prochlorococcus marinus str. AS9601]
gi|123198187|gb|ABM69828.1| exodeoxyribonuclease III [Prochlorococcus marinus str. AS9601]
Length = 281
Score = 89.5 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 18/134 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------WQKMDPD------G 50
L + D + K G + GDFN +++ D ++
Sbjct: 135 LASFLDDQEKKGALICLMGDFNVAPSNLDIHDPKKYEGGIMASEIERSALNNVLKKRLID 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ Q RN + D+ + S + S + S
Sbjct: 195 SFRIYEQNTGHWSWWDYRNNAFELNKGWRIDHIYISKELSSKLKSCVIDSCPRGNLRPSD 254
Query: 111 HCPLTIEYDFEKGN 124
H P+ I+ + + N
Sbjct: 255 HAPVMIDLNLNEIN 268
>gi|91787699|ref|YP_548651.1| exodeoxyribonuclease III [Polaromonas sp. JS666]
gi|91696924|gb|ABE43753.1| Exodeoxyribonuclease III [Polaromonas sp. JS666]
Length = 267
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 18/130 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
L+ W +++ V+ GDFN + D +
Sbjct: 137 LRAWLREELAEHSRLVLVGDFNITADDRDTYDAQGLHETIHHTADERQHLQALLGLGLHD 196
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q +++ R + + D ++ S L + + S
Sbjct: 197 AFRLFEQPEKTYSWWDYREFAFRRNRGLRIDYILVSNALKPAVKSCLIDKLPRKNERPSD 256
Query: 111 HCPLTIEYDF 120
H P+ E D+
Sbjct: 257 HAPVVAELDW 266
>gi|134095562|ref|YP_001100637.1| putative exodeoxyribonuclease III [Herminiimonas arsenicoxydans]
Length = 237
Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 34/131 (25%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ L +W Q+ + + GD+N D Q+M
Sbjct: 107 KALHEWLAQEQQQHPELALLGDYNIAPEDRDVHDPAAWAGQVLVSEPERAAFVRLQEMGF 166
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++ R + D+ + + + + +
Sbjct: 167 TDAFRMFEQPEKLYSWWDYRQMGFRLNRGLRIDHILLSAPLAARCSACVIDKVPRKWEQP 226
Query: 109 STHCPLTIEYD 119
S H P+ D
Sbjct: 227 SDHTPVIATID 237
>gi|194289407|ref|YP_002005314.1| exodeoxyribonuclease iii [Cupriavidus taiwanensis LMG 19424]
gi|193223242|emb|CAQ69247.1| EXODEOXYRIBONUCLEASE III [Cupriavidus taiwanensis LMG 19424]
Length = 276
Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 33/130 (25%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
E + W +++ + GDFN D ++
Sbjct: 144 EAMTAWLREEMARHPRLALLGDFNIAPEDRDVHDPAKWEGQNLVSPPERAAFAALLELGL 203
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+F Q +++ R + + D+ + + + +
Sbjct: 204 ADAFRKFEQPEKAFSWWDYRMLAFRRNAGLRIDHILLSPALAEQCTACVIDRVPRTWEQP 263
Query: 109 STHCPLTIEY 118
S H P+
Sbjct: 264 SDHTPVVATL 273
>gi|254526744|ref|ZP_05138796.1| exodeoxyribonuclease III [Prochlorococcus marinus str. MIT 9202]
gi|221538168|gb|EEE40621.1| exodeoxyribonuclease III [Prochlorococcus marinus str. MIT 9202]
Length = 281
Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 18/135 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------WQKMDPD------G 50
L + D++ K G + GDFN +++ D ++
Sbjct: 135 LGSFLDEQEKKGELICLLGDFNIAPSNLDIHDPKKYEGGIMASEIERNALNNVLKKRLID 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q RN + D+ + S + S + S
Sbjct: 195 SFRIFEQNTGHWSWWDYRNNAFELNKGWRIDHIYISKELSSKLKSCVIDCSPRGYLRPSD 254
Query: 111 HCPLTIEYDFEKGNV 125
H P+ I+ + N+
Sbjct: 255 HAPVMIDLNLNDTNL 269
>gi|73540991|ref|YP_295511.1| exodeoxyribonuclease III [Ralstonia eutropha JMP134]
gi|72118404|gb|AAZ60667.1| Exodeoxyribonuclease III [Ralstonia eutropha JMP134]
Length = 275
Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 35/131 (26%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ + W +++ + GDFN D ++
Sbjct: 143 DAMTAWLREELAKYPRLALLGDFNIAPEDRDVHDPAKWEGQNLVSPQERAAFTALVELGL 202
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+F Q +++ R + + D+ + + S + +
Sbjct: 203 ADAFRKFEQPEKAFSWWDYRMFAFRRNAGLRIDHILLSPELASSCSACVIDRAPRTWEQP 262
Query: 109 STHCPLTIEYD 119
S H P+ +
Sbjct: 263 SDHTPVVATLN 273
>gi|91784274|ref|YP_559480.1| exodeoxyribonuclease III [Burkholderia xenovorans LB400]
gi|91688228|gb|ABE31428.1| Exodeoxyribonuclease III [Burkholderia xenovorans LB400]
Length = 258
Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 32/129 (24%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L W ++ + GD+N D +
Sbjct: 129 ALHDWIASEMALHPKLALLGDYNIAPEDRDVHDPKAWEGQNLVSPEERAAFVQLIGLGLV 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+F Q ++ R + + D+ + S + + + + S
Sbjct: 189 DAFRQFEQPEKIYSWWDYRMMAFRRNAGLRIDHILLSKALAEICSSCEVDKVPRKWDQPS 248
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 249 DHAPVVAQL 257
>gi|317404954|gb|EFV85317.1| exodeoxyribonuclease III [Achromobacter xylosoxidans C54]
Length = 260
Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 32/132 (24%), Gaps = 18/132 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPD 49
++ W +IK + GD+N + +
Sbjct: 129 AMRAWLADEIKQYPRLAVLGDYNVAPADEDVHNPEKWEGQVLVSEPERQALRDLIDLGLA 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q ++S R + + D+ + R + S
Sbjct: 189 DSFRLFEQPEKSFSWWDYRQFAFRRNAGLRIDHILLSPPLVKRCTACVIDKEPRRNEQPS 248
Query: 110 THCPLTIEYDFE 121
H P+ F+
Sbjct: 249 DHAPVVATLTFD 260
>gi|126695849|ref|YP_001090735.1| exodeoxyribonuclease III [Prochlorococcus marinus str. MIT 9301]
gi|126542892|gb|ABO17134.1| exodeoxyribonuclease III [Prochlorococcus marinus str. MIT 9301]
Length = 281
Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 39/134 (29%), Gaps = 18/134 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------FWQKMDPD-----------G 50
L + D++ K G + GDFN +++ D +++ +
Sbjct: 135 LSSFLDEQEKKGELICLMGDFNVAPSNLDIHDPKKYEGGIMASEIERNALKNVLKKRLID 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q RN D+ + + + S + S
Sbjct: 195 SFRIFEQNTGHWSWWDYRNNGFELNKGWRIDHIYISKELTSKLKSCVIDCSPRGNLRPSD 254
Query: 111 HCPLTIEYDFEKGN 124
H P+ IE + N
Sbjct: 255 HAPVMIELNLNGIN 268
>gi|241765066|ref|ZP_04763058.1| exodeoxyribonuclease III Xth [Acidovorax delafieldii 2AN]
gi|241365303|gb|EER60125.1| exodeoxyribonuclease III Xth [Acidovorax delafieldii 2AN]
Length = 258
Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
+ L W ++ + GDFN D +
Sbjct: 128 QALHDWLRTELAAHPRLALLGDFNVAPEDRDSYDPVGLRETIHHTTEERAHFQALLALGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q +++ R + D+ ++ + + +
Sbjct: 188 TDAYRMFEQPEKAYSWWDYRMLGFQKNRGLRIDHILVSEALRGTVKACTIDRAPRKNPQP 247
Query: 109 STHCPLTIEYD 119
S H P+ D
Sbjct: 248 SDHAPVVATLD 258
>gi|53802810|ref|YP_115457.1| exodeoxyribonuclease III [Methylococcus capsulatus str. Bath]
gi|53756571|gb|AAU90862.1| exodeoxyribonuclease III [Methylococcus capsulatus str. Bath]
Length = 256
Score = 88.0 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 36/129 (27%), Gaps = 18/129 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
++ + +++ V+ GDFN D W +
Sbjct: 126 VRDFIAEEMAAHPHTVVLGDFNIAPEDRDVHDPESWREKILCSTPERDAFRAWAGLGLSD 185
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
L RF Q + S R + D+ + + + + S
Sbjct: 186 LFRRFEQPEGSFSWWDYRAAGFRRNLGLRIDHILASLPLAGRCTACSIDKTPRSLERPSD 245
Query: 111 HCPLTIEYD 119
H P+ E+D
Sbjct: 246 HAPVIAEFD 254
>gi|330824047|ref|YP_004387350.1| exodeoxyribonuclease III Xth [Alicycliphilus denitrificans K601]
gi|329309419|gb|AEB83834.1| exodeoxyribonuclease III Xth [Alicycliphilus denitrificans K601]
Length = 258
Score = 88.0 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDP---D 49
L W ++ V+ GDFN D ++++
Sbjct: 129 ALHDWLRAELAAHPRLVLVGDFNVAPEDRDSYDPVGLKDTIHHTVEERQHFRQLLELGLT 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q ++S R + D+ + + + + S
Sbjct: 189 DAFRMFEQPEKSYSWWDYRQLGFQKNRGLRIDHILVSEALRAGVTACRIDRAPRKNPQPS 248
Query: 110 THCPLTIEY 118
H P+
Sbjct: 249 DHAPVVATL 257
>gi|319763690|ref|YP_004127627.1| exodeoxyribonuclease iii xth [Alicycliphilus denitrificans BC]
gi|317118251|gb|ADV00740.1| exodeoxyribonuclease III Xth [Alicycliphilus denitrificans BC]
Length = 258
Score = 87.6 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 30/129 (23%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPD 49
L W ++ V+ GDFN D ++
Sbjct: 129 ALHDWLRAELAAHPRLVLVGDFNVAPEDRDSYDPVGLKDTIHHTVEERQHFRQLLELGLT 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q ++S R + D+ + + + + S
Sbjct: 189 DAFRMFEQPEKSYSWWDYRQLGFQKNRGLRIDHILVSEALRAGVTACRIDRAPRKNPQPS 248
Query: 110 THCPLTIEY 118
H P+
Sbjct: 249 DHAPVVATL 257
>gi|264679401|ref|YP_003279308.1| exodeoxyribonuclease III Xth [Comamonas testosteroni CNB-2]
gi|262209914|gb|ACY34012.1| exodeoxyribonuclease III Xth [Comamonas testosteroni CNB-2]
Length = 260
Score = 87.6 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L W ++ V+ GDFN D ++
Sbjct: 130 QALHDWIQNQMTLHPRLVLVGDFNVAPEDRDSYDPVGLKDTIHHTVEERDHFQRLLQLGL 189
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + D+ + + + +
Sbjct: 190 SDAFRMFEQPEKSYSWWDYRMLGFQKNRGLRIDHILVSEALKSKVSACSVDRAPRKNKQP 249
Query: 109 STHCPLTIEYD 119
S H P+ + D
Sbjct: 250 SDHAPVVVTLD 260
>gi|71909260|ref|YP_286847.1| exodeoxyribonuclease III [Dechloromonas aromatica RCB]
gi|71848881|gb|AAZ48377.1| Exodeoxyribonuclease III [Dechloromonas aromatica RCB]
Length = 254
Score = 87.6 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 34/131 (25%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L W +++ + GD+N + D + +
Sbjct: 124 DALAVWLGEEMSKYPKLALCGDYNIAPDDRDVHDPKAWAGNILCSEPERAAFQRFIGLGL 183
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ F Q +++ R + D+ + + + +
Sbjct: 184 NDSFRLFEQPEKTFSWWDYRMLGFQKNLGLRIDHVLLSAPLAAKCSAAGIDRAPRKLERP 243
Query: 109 STHCPLTIEYD 119
S H P+ E
Sbjct: 244 SDHAPVWAEIS 254
>gi|86607730|ref|YP_476492.1| exodeoxyribonuclease III [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556272|gb|ABD01229.1| exodeoxyribonuclease III [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 261
Score = 87.6 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 17/128 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-----------------MDPDGL 51
LK + + G P ++ GDFN + D + +
Sbjct: 133 LKDYLAVALSQGDPILLCGDFNIALEDRDIYDPQKAGEIMASEPERQALQEILALGFEDA 192
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
RF + R+ D+ + + R K S H
Sbjct: 193 FRRFTPDPGHFSWWDYRSGGFQRNRGWRIDHHYLSRELQEKATACWIDVEPRRAEKPSDH 252
Query: 112 CPLTIEYD 119
P+ + D
Sbjct: 253 APVIVALD 260
>gi|217969881|ref|YP_002355115.1| exodeoxyribonuclease III Xth [Thauera sp. MZ1T]
gi|217507208|gb|ACK54219.1| exodeoxyribonuclease III Xth [Thauera sp. MZ1T]
Length = 254
Score = 87.6 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 16/127 (12%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-DD---------------FWQKMDPDGL 51
L +W ++KT V+AGDFN D Q++
Sbjct: 127 ALTEWLRAELKTHERLVLAGDFNIAPEDRDAHPDWKDEIHVSAPERAAFRALQELGLIDA 186
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F Q + + R + F + D+ + + R + S H
Sbjct: 187 FRLFEQPERAFSWWDYRMMAFRRNFGLRIDHLLVSPALRAACRNCVVDKEPRRLERPSDH 246
Query: 112 CPLTIEY 118
P+ +E
Sbjct: 247 APVVLEL 253
>gi|187924588|ref|YP_001896230.1| exodeoxyribonuclease III Xth [Burkholderia phytofirmans PsJN]
gi|187715782|gb|ACD17006.1| exodeoxyribonuclease III Xth [Burkholderia phytofirmans PsJN]
Length = 258
Score = 87.6 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 34/129 (26%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L W ++ + GD+N + D ++
Sbjct: 129 ALHDWIASEMALHPKLALLGDYNIAPDDRDVHDPKAWEGQNLVSPEERAAFVRLIELGLL 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+F Q ++ R + + D+ + S D + + + S
Sbjct: 189 DAFRQFEQPEKIYSWWDYRMMAFRRNAGLRIDHILLSKALADVCSSCDVDKVPRKWDQPS 248
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 249 DHAPVVAQL 257
>gi|33593125|ref|NP_880769.1| putative exodeoxyribonuclease III [Bordetella pertussis Tohama I]
gi|33563500|emb|CAE42388.1| putative exodeoxyribonuclease III [Bordetella pertussis Tohama I]
gi|332382537|gb|AEE67384.1| putative exodeoxyribonuclease III [Bordetella pertussis CS]
Length = 260
Score = 87.6 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 37/131 (28%), Gaps = 18/131 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDP---DG 50
L+ W +++++T I GD+N + ++ +
Sbjct: 130 LRDWLEEEMRTYPRLAILGDYNVAPADADVHNPEKWEGQVLVSEPERAAFRALLDLGLTD 189
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q ++S R + + D+ V+ + S
Sbjct: 190 SFRLFEQPEKSFSWWDYRQFAFRRNAGLRIDHVLLSDALKPHCVACVIDKAPRANEQPSD 249
Query: 111 HCPLTIEYDFE 121
H P+ F+
Sbjct: 250 HAPVIATLAFD 260
>gi|260220884|emb|CBA28896.1| hypothetical protein Csp_A09430 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 257
Score = 87.6 bits (215), Expect = 5e-16, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
L++W ++ T V+ GD+N + D +
Sbjct: 125 ALRRWVKDELATHPNLVLMGDYNITFDEDDVWDPVNLEGTIHCTEEERYHLRALIALGLC 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
FP +S R+ + D+ + + + + S
Sbjct: 185 DSYRLFPYPPKSFSWWDYRDAGFRRNRGLRIDHILVSNALKPQVTACTIDKTPRKNERPS 244
Query: 110 THCPLTIEYD 119
H P+ ++
Sbjct: 245 DHAPVVVDIS 254
>gi|296158362|ref|ZP_06841193.1| exodeoxyribonuclease III Xth [Burkholderia sp. Ch1-1]
gi|295891306|gb|EFG71093.1| exodeoxyribonuclease III Xth [Burkholderia sp. Ch1-1]
Length = 258
Score = 87.6 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L W ++ + GD+N D +
Sbjct: 129 ALHDWIASEMALHPKLALLGDYNIAPEDRDVHDPKAWEGQNLVSPEERAEFVRLIGLGLV 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
RF Q ++ R + + D+ + S D + + + S
Sbjct: 189 DAFRRFEQPEKIYSWWDYRMMAFRRNAGLRIDHILLSKALAEVCSSCDIDKVPRKWDQPS 248
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 249 DHAPVVAQL 257
>gi|34496332|ref|NP_900547.1| exodeoxyribonuclease III [Chromobacterium violaceum ATCC 12472]
gi|34102184|gb|AAQ58551.1| exodeoxyribonuclease III [Chromobacterium violaceum ATCC 12472]
Length = 257
Score = 87.6 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 31/128 (24%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDG 50
L+ + ++ ++ GD+N D +
Sbjct: 128 LEGYVAAELARHPQLLLLGDYNIAPEDRDVYDPEGWREQVLCSTPERDAFRRLIALGLSD 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F QE++ R + D+ + + + + S
Sbjct: 188 SFRLFNQEEKQYSWWDYRQMMFRRNKGVRIDHILVSDALKPRAQACEIDKAPRKWERPSD 247
Query: 111 HCPLTIEY 118
H P+ +
Sbjct: 248 HTPVVLTL 255
>gi|160900429|ref|YP_001566011.1| exodeoxyribonuclease III [Delftia acidovorans SPH-1]
gi|160366013|gb|ABX37626.1| exodeoxyribonuclease III [Delftia acidovorans SPH-1]
Length = 258
Score = 87.2 bits (214), Expect = 6e-16, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 34/130 (26%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
+ L+ W ++ V+ GDFN D ++
Sbjct: 128 QALQDWVKSEMAIHPRLVLVGDFNVAPEDRDSYDPIGLKDTIHHTVEERTHFQALLQLGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + D+ S+ + + +
Sbjct: 188 TDAFRMFDQPEKSYSWWDYRMLGFQKNRGLRIDHILVSEALRPSVSACSVDRAPRKNPQP 247
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 248 SDHAPVVVTL 257
>gi|74318453|ref|YP_316193.1| exodeoxyribonuclease III [Thiobacillus denitrificans ATCC 25259]
gi|74057948|gb|AAZ98388.1| exodeoxyribonuclease III xth [Thiobacillus denitrificans ATCC
25259]
Length = 255
Score = 87.2 bits (214), Expect = 6e-16, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 33/130 (25%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ L W +++ + GDFN D ++
Sbjct: 124 DALSLWLMEELARHPRLAVLGDFNIAPEDRDVHDPKAWEGSVHVSPRERERFQALLQLGL 183
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + D+ + S S + +
Sbjct: 184 KDSFRLFEQPEKSFSWWDYRMMGFRRNHGLRIDHILLTDALAASCTSSTIDRDMRKLERP 243
Query: 109 STHCPLTIEY 118
S H P+ E
Sbjct: 244 SDHAPVLAEI 253
>gi|170694716|ref|ZP_02885867.1| exodeoxyribonuclease III Xth [Burkholderia graminis C4D1M]
gi|170140347|gb|EDT08524.1| exodeoxyribonuclease III Xth [Burkholderia graminis C4D1M]
Length = 258
Score = 87.2 bits (214), Expect = 7e-16, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 35/129 (27%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L W ++ + GD+N + D ++
Sbjct: 129 ALHDWVKSEMALYPKLALLGDYNIAPDDRDVHDPKAWEGQNLVSPEERAEFVRLIELGLV 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+F Q ++ R + + D+ + + S + + + + S
Sbjct: 189 DAFRQFEQPEKIYSWWDYRMMAFRRNAGLRIDHILLSKALAETCASCEVDKVPRKWDQPS 248
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 249 DHAPVVAQL 257
>gi|307729190|ref|YP_003906414.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1003]
gi|307583725|gb|ADN57123.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1003]
Length = 258
Score = 87.2 bits (214), Expect = 7e-16, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L W ++ + GD+N + D ++
Sbjct: 129 ALHDWVQSEMALYPKLALLGDYNIAPDDRDVHDPKAWEGQNLVSPEERAEFVRLTELGLV 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+F Q ++ R + + D+ + + S + + + + S
Sbjct: 189 DAFRQFEQPEKIYSWWDYRMMAFRRNAGLRIDHILLSKPLAETCTSCEVDKVPRKWDQPS 248
Query: 110 THCPLTIEYD 119
H P+ +
Sbjct: 249 DHAPVVAQLS 258
>gi|33596079|ref|NP_883722.1| putative exodeoxyribonuclease III [Bordetella parapertussis 12822]
gi|33601475|ref|NP_889035.1| putative exodeoxyribonuclease III [Bordetella bronchiseptica RB50]
gi|33573082|emb|CAE36724.1| putative exodeoxyribonuclease III [Bordetella parapertussis]
gi|33575911|emb|CAE32990.1| putative exodeoxyribonuclease III [Bordetella bronchiseptica RB50]
Length = 260
Score = 86.8 bits (213), Expect = 8e-16, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 18/130 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDP---DG 50
L+ W +++++T I GD+N + ++ +
Sbjct: 130 LRDWLEEEMRTYPRLAILGDYNVAPADADVHNPEKWEGQVLVSEPERAAFRALLDLGLTD 189
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q ++S R + + D+ V+ + S
Sbjct: 190 SFRLFEQPEKSFSWWDYRQFAFRRNAGLRIDHVLLSDALKPHCVACVIDKAPRANEQPSD 249
Query: 111 HCPLTIEYDF 120
H P+ F
Sbjct: 250 HAPVIATLAF 259
>gi|113477060|ref|YP_723121.1| exodeoxyribonuclease III [Trichodesmium erythraeum IMS101]
gi|110168108|gb|ABG52648.1| Exodeoxyribonuclease III [Trichodesmium erythraeum IMS101]
Length = 261
Score = 86.8 bits (213), Expect = 9e-16, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 30/130 (23%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ L+++ + I GDFN D K+
Sbjct: 132 KLLQEYVKIILDKSPNLCICGDFNIVPEDRDIYDPEGCKNSVGLSDLERQALQEILKLGL 191
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+F E R D+ + S K
Sbjct: 192 VDAFRQFTTEGGHYSWWDYRAAGFRRNRGWRIDHHYLSLPLSQKATMCVIDKNPRELLKP 251
Query: 109 STHCPLTIEY 118
S H P+ +E+
Sbjct: 252 SDHAPVIVEF 261
>gi|299530483|ref|ZP_07043903.1| exodeoxyribonuclease III Xth [Comamonas testosteroni S44]
gi|298721459|gb|EFI62396.1| exodeoxyribonuclease III Xth [Comamonas testosteroni S44]
Length = 258
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L W ++ V+ GDFN D ++
Sbjct: 128 QALHDWIQNQMTLHPRLVLVGDFNVAPEDRDSYDPVGLKDTIHHTVEERDHFQRLLQLGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + D+ + + + +
Sbjct: 188 SDAFRMFEQPEKSYSWWDYRMLGFQKNRGLRIDHILVSEALKSKVSACSVDRAPRKNKQP 247
Query: 109 STHCPLTIEYD 119
S H P+ + +
Sbjct: 248 SDHAPVVVTLN 258
>gi|187478127|ref|YP_786151.1| exodeoxyribonuclease III [Bordetella avium 197N]
gi|115422713|emb|CAJ49240.1| exodeoxyribonuclease III [Bordetella avium 197N]
Length = 261
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 35/132 (26%), Gaps = 18/132 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDP---D 49
L+ W +++++T I GD+N + +Q +
Sbjct: 129 ALRHWLEEELRTYPRLAILGDYNVAPADEDVHNPEKWEGQVLVSAPERQAFQALLDLGLT 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q ++S R + D+ + V+ + S
Sbjct: 189 DAFRLFAQPEKSFSWWDYRMFGFRRNAGLRIDHILLSDALKPTCVACIIDKGPRGNEQPS 248
Query: 110 THCPLTIEYDFE 121
H P+
Sbjct: 249 DHTPVVTTLKLS 260
>gi|297537413|ref|YP_003673182.1| exodeoxyribonuclease III Xth [Methylotenera sp. 301]
gi|297256760|gb|ADI28605.1| exodeoxyribonuclease III Xth [Methylotenera sp. 301]
Length = 260
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 35/129 (27%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L W ++K V+ GD+N D ++
Sbjct: 130 ALNTWLAGELKKYPKLVVLGDYNIAPEDRDCHDPAAWLGQILVSPQEREHFQKLLQLGLH 189
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q ++S R F + D+ + ++ + + S
Sbjct: 190 DSFRLFEQAEKSFSWWDYRMMGFRRNFGMRIDHILVSDALKSACIAATIDKAPRKLERPS 249
Query: 110 THCPLTIEY 118
H P+ +E
Sbjct: 250 DHTPVILEL 258
>gi|94310134|ref|YP_583344.1| exodeoxyribonuclease III [Cupriavidus metallidurans CH34]
gi|93353986|gb|ABF08075.1| exodeoxyribonuclease III (xth) [Cupriavidus metallidurans CH34]
Length = 265
Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 30/132 (22%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ + +W ++ + GDFN D +
Sbjct: 133 KAMIEWLRAEMTRYPKLALLGDFNIAPEDRDVHDPAKWEGQNLVSPQERDAFQTLIGLGL 192
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++ R + D+ D + + R +
Sbjct: 193 VDSFRMFEQPEKMFSWWDYRMMGFRRNAGLRIDHILLSADLARQCATCVIDKEPRRWEQP 252
Query: 109 STHCPLTIEYDF 120
S H P+
Sbjct: 253 SDHTPVVATLTL 264
>gi|312796736|ref|YP_004029658.1| Exodeoxyribonuclease III [Burkholderia rhizoxinica HKI 454]
gi|312168511|emb|CBW75514.1| Exodeoxyribonuclease III (EC 3.1.11.2) [Burkholderia rhizoxinica
HKI 454]
Length = 259
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L++W +++ F + GD+N D ++
Sbjct: 129 ALREWVAAEMRAHPQFALTGDYNIAPEDRDVHDPQAWEGQNLVSPEERDAFRSLVELGLV 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q +S R + + D+ + + + R + S
Sbjct: 189 DAFRCFEQPDKSFSWWDYRMLAFRRNAGLRIDHILLSPSLAQCCSACEIDKTPRRWDQPS 248
Query: 110 THCPLTIEYD 119
H P+ +
Sbjct: 249 DHAPVIATLE 258
>gi|300868692|ref|ZP_07113303.1| exodeoxyribonuclease III [Oscillatoria sp. PCC 6506]
gi|300333253|emb|CBN58495.1| exodeoxyribonuclease III [Oscillatoria sp. PCC 6506]
Length = 261
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 30/130 (23%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ L+++ I + GDFN + + +
Sbjct: 132 KLLQEYLKIIIDKSPNLCVCGDFNIAPDDRDIHNPKAFKNQIMASPAERQALQEIVALGF 191
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F E R D+ + S + +K
Sbjct: 192 SDAFRIFTDEGGHFSWWDYRTGGFRHNRGWRIDHHYLSLSLCDRAKSCTIDKTPRQLTKP 251
Query: 109 STHCPLTIEY 118
S H P+ +E
Sbjct: 252 SDHAPVIVEI 261
>gi|295676960|ref|YP_003605484.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1002]
gi|295436803|gb|ADG15973.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1002]
Length = 283
Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ L W ++ + GD+N D +
Sbjct: 153 DALHDWLATEMTLHPKLALLGDYNIAPEDRDVHDPKAWEGQNLVSPEERAAFVRLIGLGL 212
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+F Q+++ R + + D+ S + D + + +
Sbjct: 213 LDAFRQFEQQEKIYSWWDYRMMAFRRNAGLRIDHILLSKALSDICKACDIDKVPRKWDQP 272
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 273 SDHAPVFAQL 282
>gi|323526639|ref|YP_004228792.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1001]
gi|323383641|gb|ADX55732.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1001]
Length = 259
Score = 86.0 bits (211), Expect = 1e-15, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 35/129 (27%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L W ++ + GD+N + D ++
Sbjct: 129 ALHDWVRSEMALYPKLALLGDYNIAPDDRDVHDPKAWEGQNLVSPEERAEFVRLTELGLV 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+F Q ++ R + + D+ + + S + + + + S
Sbjct: 189 DAFRQFDQPEKIYSWWDYRMMAFRRNAGLRIDHILLSKPLAETCTSCEVDKVPRKWDQPS 248
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 249 DHAPVVAQI 257
>gi|113867383|ref|YP_725872.1| exonuclease III [Ralstonia eutropha H16]
gi|113526159|emb|CAJ92504.1| Exonuclease III [Ralstonia eutropha H16]
Length = 276
Score = 86.0 bits (211), Expect = 1e-15, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 34/131 (25%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
+ + W +++K + GDFN D ++
Sbjct: 144 DAMTAWLREEMKRYPKLALLGDFNIAPEDRDVHDPKKWEGQNLVSPQERAAFAALVELGL 203
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+F Q +++ R + + D+ + + + +
Sbjct: 204 ADAFRQFEQPEKAFSWWDYRMMAFRRNAGLRIDHILLSPALTSGCSACVIDRVPRTWEQP 263
Query: 109 STHCPLTIEYD 119
S H P+
Sbjct: 264 SDHTPVVATLS 274
>gi|91774528|ref|YP_544284.1| exodeoxyribonuclease III [Methylobacillus flagellatus KT]
gi|91708515|gb|ABE48443.1| Exodeoxyribonuclease III [Methylobacillus flagellatus KT]
Length = 255
Score = 86.0 bits (211), Expect = 1e-15, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 30/130 (23%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
E L + ++ + GD+N D +
Sbjct: 124 EALTAYLKTELAAHPKLALLGDYNIAPEDRDVHDPVAWAGQVLVSEPERAAFRAIMALGL 183
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F QE +S R + D+ + + +
Sbjct: 184 HDGFRLFDQEPDSFSWWDYRMAGFRRNLGLRIDHILVSEALKSECMRCWIDKGPRKLERP 243
Query: 109 STHCPLTIEY 118
S H P+ ++
Sbjct: 244 SDHTPVVLQL 253
>gi|171463432|ref|YP_001797545.1| exodeoxyribonuclease III Xth [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171192970|gb|ACB43931.1| exodeoxyribonuclease III Xth [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 288
Score = 86.0 bits (211), Expect = 1e-15, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 32/130 (24%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L W ++++ + GDFN D K+
Sbjct: 150 KALHTWLGEELENNSRLALLGDFNIAPADEDVHDSKVWEGQSLVSPPEREAFQGLIKLGL 209
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ F Q + R + D+ ++ +
Sbjct: 210 NDSFRMFEQAPKVFSWWDYRMMGFRRNAGMRIDHILLSEALKDQCIASTVDKEPRTWEQP 269
Query: 109 STHCPLTIEY 118
S H P+ E+
Sbjct: 270 SDHAPVIAEF 279
>gi|253997518|ref|YP_003049582.1| exodeoxyribonuclease III Xth [Methylotenera mobilis JLW8]
gi|253984197|gb|ACT49055.1| exodeoxyribonuclease III Xth [Methylotenera mobilis JLW8]
Length = 256
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 30/130 (23%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
L W ++ + GD+N D +
Sbjct: 125 ALNAWLKTELTQHAKLALLGDYNIAPEDRDCHDPAAWEGQILVSPLEREAFNHLVSLGLS 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q ++S R + D+ + + + S
Sbjct: 185 DSFRLFEQPEKSFSWWDYRMMGFRRNLGMRIDHILVSDALKVLCAAAYIDKAPRKLERPS 244
Query: 110 THCPLTIEYD 119
H P+ +E +
Sbjct: 245 DHTPVVLELN 254
>gi|114321929|ref|YP_743612.1| exodeoxyribonuclease III [Alkalilimnicola ehrlichii MLHE-1]
gi|114228323|gb|ABI58122.1| Exodeoxyribonuclease III [Alkalilimnicola ehrlichii MLHE-1]
Length = 258
Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 19/133 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDP 48
L W ++ + V+ GDFN + D ++
Sbjct: 126 RLADWLAEERRRHDKLVVVGDFNIAPDDRDVHDPELWREKVLCSTPEREALRRLTGELGL 185
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++ R + + D + S +
Sbjct: 186 TDTFRLFDQPEKVWSWWDYRMNNFKRNRGLRIDLVLASPALYQACTSSYVDREPRTWERP 245
Query: 109 STHCPLTIEYDFE 121
S H P E++ +
Sbjct: 246 SDHAPAVAEFNLD 258
>gi|329911665|ref|ZP_08275588.1| Exodeoxyribonuclease III [Oxalobacteraceae bacterium IMCC9480]
gi|327545815|gb|EGF30936.1| Exodeoxyribonuclease III [Oxalobacteraceae bacterium IMCC9480]
Length = 256
Score = 85.7 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 33/130 (25%), Gaps = 18/130 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPDG 50
L++W ++ F + GD+N D ++
Sbjct: 126 LQQWLALEMAAHPKFALLGDYNIAPEDRDVHDPAAWVGQILVSEPERAAFQRMIALELTD 185
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q + R + D+ + + + S + + + S
Sbjct: 186 AFRLFEQADKLFSWWDYRQMGFRRNAGMRIDHILLSKELAAACTSCVIDKVPRKWEQPSD 245
Query: 111 HCPLTIEYDF 120
H P+
Sbjct: 246 HTPVVATIAL 255
>gi|301632179|ref|XP_002945168.1| PREDICTED: exodeoxyribonuclease III-like [Xenopus (Silurana)
tropicalis]
Length = 263
Score = 85.7 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
+ L+ W ++ + GDFN D +
Sbjct: 128 QALQDWLRSELALHPRLALVGDFNVAPEDRDSHDPEGLRETIHHTTQERLHFQALLGLGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + D+ + + + L + +
Sbjct: 188 VDAFRLFVQPEKSFSWWDYRMLGFQKNRGLRIDHILVSQMLAPLVSACAVDRLPRKNKQP 247
Query: 109 STHCPLTIEYD 119
S H P+ +
Sbjct: 248 SDHAPVVVTLR 258
>gi|88813684|ref|ZP_01128912.1| exodeoxyribonuclease III [Nitrococcus mobilis Nb-231]
gi|88789071|gb|EAR20210.1| exodeoxyribonuclease III [Nitrococcus mobilis Nb-231]
Length = 256
Score = 85.7 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 18/131 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
L+ W ++++ ++ GDFN D +
Sbjct: 126 LRGWLAEELERWPRSIVVGDFNIAPQDQDVHDPQQWHEQVLCSTPEREALQALLALGFAD 185
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+FPQE R S + D + ++ + + S
Sbjct: 186 SFRQFPQEPGIFSWWDYRMNSFRRNRGLRIDLILSSAALTRTLTASYVDRGPRGWPRPSD 245
Query: 111 HCPLTIEYDFE 121
H P+ E FE
Sbjct: 246 HAPVVAELHFE 256
>gi|237747770|ref|ZP_04578250.1| exodeoxyribonuclease III [Oxalobacter formigenes OXCC13]
gi|229379132|gb|EEO29223.1| exodeoxyribonuclease III [Oxalobacter formigenes OXCC13]
Length = 255
Score = 85.7 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 18/129 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
L +W ++ + + GD+N D Q +D
Sbjct: 126 LTQWLAEERQKHPYLALLGDYNIAPEDRDVYDPVAWEGNVLVSPPERDAFRALQDIDFID 185
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q ++S R + D+ + + + + ++ S
Sbjct: 186 AYRLFEQPEKSYSWWDYRQLGFQKNRGLRIDHILLSKALAPHCTACTIDRIPRKWTQPSD 245
Query: 111 HCPLTIEYD 119
H P+ E D
Sbjct: 246 HTPVIAELD 254
>gi|289207194|ref|YP_003459260.1| exodeoxyribonuclease III Xth [Thioalkalivibrio sp. K90mix]
gi|288942825|gb|ADC70524.1| exodeoxyribonuclease III Xth [Thioalkalivibrio sp. K90mix]
Length = 255
Score = 85.7 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 32/130 (24%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
++ W +I+ V+ GDFN D ++
Sbjct: 125 RMRSWLAAEIEAHPKLVVLGDFNIAPEDRDVHDPEAWHERILCSTPEREALAALTELGLA 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q +E R S + D + + + S
Sbjct: 185 DTFRAFEQPEEEFSWFDYRAASFRRNRGLRIDLVLASPALLKRLTAAGIDREPRGWERPS 244
Query: 110 THCPLTIEYD 119
H P+ E+
Sbjct: 245 DHAPVWAEFS 254
>gi|89901754|ref|YP_524225.1| exodeoxyribonuclease III [Rhodoferax ferrireducens T118]
gi|89346491|gb|ABD70694.1| Exodeoxyribonuclease III [Rhodoferax ferrireducens T118]
Length = 274
Score = 85.7 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
L+ W ++ T V+ GD+N + D +
Sbjct: 141 LRDWVRGELLTHPRLVLMGDYNITFDDADVWDPVGLKDTIHCTEEERYHLRALIALGLHD 200
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q ++S R+ + + D+ + + + + S
Sbjct: 201 SFRLFAQPEKSYSWWDYRDFAFRRNHGLRIDHILVSDALKPLVTACVIDKAPRKNERPSD 260
Query: 111 HCPLTIEY 118
H P+ +
Sbjct: 261 HAPVVVTL 268
>gi|16331188|ref|NP_441916.1| exodeoxyribonuclease III [Synechocystis sp. PCC 6803]
gi|1653682|dbj|BAA18594.1| exodeoxyribonuclease III [Synechocystis sp. PCC 6803]
Length = 275
Score = 85.7 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 34/131 (25%), Gaps = 20/131 (15%)
Query: 9 LKKWADQKIKTGIP-FVIAGDFNRKINSIGDTDDFWQK-------------------MDP 48
L+ + +Q ++ P F++ GDFN D ++ +
Sbjct: 144 LQTYLEQLRRSDTPEFLVCGDFNIAPEDRDIHDPVGRENHIMATAMEREALTEVLAIANL 203
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+F +E R + D+ K
Sbjct: 204 QDAFRKFTEETGHYSWWDYRTRGFSRNRGWRIDHHYLTPQLYDQAQKCWIDREPRGWEKP 263
Query: 109 STHCPLTIEYD 119
S H P+ + +
Sbjct: 264 SDHAPVVVTIN 274
>gi|319779595|ref|YP_004130508.1| Exodeoxyribonuclease III [Taylorella equigenitalis MCE9]
gi|317109619|gb|ADU92365.1| Exodeoxyribonuclease III [Taylorella equigenitalis MCE9]
Length = 260
Score = 85.3 bits (209), Expect = 2e-15, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 16/129 (12%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------DDFWQKMDP---DGL 51
L+ + + ++ T ++ GDFN ++ +
Sbjct: 132 ALRTYIEDQLNTNENLILTGDFNIAPKDEDIHPKYLGPILISPQERAHFEALLDLGLVDT 191
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F QE+ S R + D+ + S H
Sbjct: 192 FRLFEQEQNSFSWWDYRQFGFKRNAGLRIDHILASSSLGKKCYKSWIDKKQRAHERPSDH 251
Query: 112 CPLTIEYDF 120
P+ E+
Sbjct: 252 APVLAEFKL 260
>gi|186476236|ref|YP_001857706.1| exodeoxyribonuclease III Xth [Burkholderia phymatum STM815]
gi|184192695|gb|ACC70660.1| exodeoxyribonuclease III Xth [Burkholderia phymatum STM815]
Length = 258
Score = 85.3 bits (209), Expect = 2e-15, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 33/128 (25%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ + +W ++ + GD+N D ++
Sbjct: 128 DAMYEWISSELTQHPKLALLGDYNIAPEDRDVHDPKAWEGQNLVSPEERAQFNRLIELGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q +++ R + + D+ + S D + +
Sbjct: 188 VDSFRLFDQPEKTFTWWDYRMLAFRRNAGLRIDHILLSKPLAASCTHCDVDKTPRKWDQP 247
Query: 109 STHCPLTI 116
S H P+
Sbjct: 248 SDHAPVVA 255
>gi|292490590|ref|YP_003526029.1| exodeoxyribonuclease III Xth [Nitrosococcus halophilus Nc4]
gi|291579185|gb|ADE13642.1| exodeoxyribonuclease III Xth [Nitrosococcus halophilus Nc4]
Length = 257
Score = 85.3 bits (209), Expect = 2e-15, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 31/129 (24%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
+K + + + ++ GDFN + +
Sbjct: 128 RVKDYLQEALAEYPKLIVLGDFNVAPGDGDVHNPEIWHETILCSTPEREALGEILDLGFQ 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F QE +S R + + + D + R + S
Sbjct: 188 DSFRLFEQEGQSFSWWDYRGGAFRRNWGLRIDLILISKELVPKCTECVIDKEPRRLKRPS 247
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 248 DHAPVIATF 256
>gi|152980157|ref|YP_001354134.1| exodeoxyribonuclease III [Janthinobacterium sp. Marseille]
gi|151280234|gb|ABR88644.1| exodeoxyribonuclease III [Janthinobacterium sp. Marseille]
Length = 254
Score = 85.3 bits (209), Expect = 2e-15, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 18/129 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPDG 50
L + ++K + GD+N D Q+M
Sbjct: 126 LHELLAHELKQHENVALLGDYNIAPEDRDVHDPVAWQGQVLVSEPERAAFVRMQEMGFTD 185
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q ++ R + D+ + + + + + S
Sbjct: 186 AFRMFEQAEKLYSWWDYRQMGFRLNRGLRIDHILLSPSLAKRCTACVIDKVPRKWEQPSD 245
Query: 111 HCPLTIEYD 119
H P+ D
Sbjct: 246 HTPVIATLD 254
>gi|187929032|ref|YP_001899519.1| exodeoxyribonuclease III Xth [Ralstonia pickettii 12J]
gi|187725922|gb|ACD27087.1| exodeoxyribonuclease III Xth [Ralstonia pickettii 12J]
Length = 269
Score = 85.3 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
E L+ W ++ ++ GDFN D Q
Sbjct: 137 EALQAWLTSELAANPRLMLLGDFNIAPEDRDVHDPKKWEGQNLVSPEERAAFRAMQGAGL 196
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F QE + R + D+ + + S + +
Sbjct: 197 VDAFRMFEQEDKLFSWWDYRMFGFKRNAGLRIDHIMLSPELAKLCESCHIDRVPRTWEQP 256
Query: 109 STHCPLTIEYD 119
S H P+
Sbjct: 257 SDHTPVVAALR 267
>gi|119899170|ref|YP_934383.1| exodeoxyribonuclease III [Azoarcus sp. BH72]
gi|119671583|emb|CAL95496.1| exodeoxyribonuclease III [Azoarcus sp. BH72]
Length = 253
Score = 84.9 bits (208), Expect = 3e-15, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 34/128 (26%), Gaps = 16/128 (12%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-DD---------------FWQKMDPDGL 51
L +W ++ V+ GDFN D +
Sbjct: 125 ALTEWLRAELTAHPRLVLGGDFNIAPEDRDAHPDWKDEIHVSAPERAAFTALTALGLVDA 184
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ Q + + R + F + D+ + + + + S H
Sbjct: 185 FRLYDQPERAFSWWDYRMGAFRRNFGLRIDHLLVSPALQPACRACTVDKAPRKLERPSDH 244
Query: 112 CPLTIEYD 119
P+ ++ +
Sbjct: 245 APVVLDLE 252
>gi|254431951|ref|ZP_05045654.1| exodeoxyribonuclease III [Cyanobium sp. PCC 7001]
gi|197626404|gb|EDY38963.1| exodeoxyribonuclease III [Cyanobium sp. PCC 7001]
Length = 278
Score = 84.9 bits (208), Expect = 3e-15, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 32/134 (23%), Gaps = 18/134 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDP--DG 50
L+++ + + G P + GDFN D + +
Sbjct: 135 LRRYLAVQEEQGDPLCMLGDFNIGPEDRDLHDPDRLTGGIMASEAERQALREALGDRLTD 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F E R + D+ + + S
Sbjct: 195 AFRLFEPEAGHWSWWDYRTGAWDRDRGWRIDHIYLCDTLAACATGCRIHKHTRGNVQPSD 254
Query: 111 HCPLTIEYDFEKGN 124
H P+ + + + +
Sbjct: 255 HAPVVVNLAWPEED 268
>gi|116749760|ref|YP_846447.1| exodeoxyribonuclease III Xth [Syntrophobacter fumaroxidans MPOB]
gi|116698824|gb|ABK18012.1| Exodeoxyribonuclease III [Syntrophobacter fumaroxidans MPOB]
Length = 265
Score = 84.9 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 36/134 (26%), Gaps = 19/134 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
LK W D + + P V GD N +I D
Sbjct: 128 RLKSWLDGRFEPSQPLVWTGDINVAPEAIDLFDPKRLAGKVSFHPREHEALAAVAAWGLV 187
Query: 50 GLLIRFPQEKESTCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + + R +S D+ + + + R
Sbjct: 188 DVFRKLHPDTKQFTFWDYRLPQSFKRNLGWRLDHIYATRTLADACLECQADGEPRGRETP 247
Query: 109 STHCPLTIEYDFEK 122
S H P+ E+D E+
Sbjct: 248 SDHTPVWAEFDLER 261
>gi|120610134|ref|YP_969812.1| exodeoxyribonuclease III [Acidovorax citrulli AAC00-1]
gi|120588598|gb|ABM32038.1| exodeoxyribonuclease III [Acidovorax citrulli AAC00-1]
Length = 258
Score = 84.9 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPD 49
L +W +++ V+ GDFN D ++
Sbjct: 129 ALHRWVREELLAHPRLVLVGDFNVAPEDRDSFDPVGLKDTIHHTVEERTHFQSLLQLGLT 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q ++S R + D+ + + + + S
Sbjct: 189 DAYRMFEQPEKSFSWWDYRMLGFQKNRGLRIDHILVSEALRGQVTACTIDRQPRKNPQPS 248
Query: 110 THCPLTIEY 118
H P+
Sbjct: 249 DHAPVVATL 257
>gi|207724128|ref|YP_002254526.1| exodeoxyribonuclease III protein [Ralstonia solanacearum MolK2]
gi|206589337|emb|CAQ36299.1| exodeoxyribonuclease III protein [Ralstonia solanacearum MolK2]
Length = 269
Score = 84.9 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 30/130 (23%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
L+ W ++ ++ GDFN + D +
Sbjct: 138 ALQDWLKAEMDAHPRLMLLGDFNIAPDDRDVHDPKKWEGMNLVSPEERAAFRALESAGLV 197
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q + R + + D+ + + S + S
Sbjct: 198 DAFRMFEQADKLFSWWDYRLFAFKRNAGLRIDHILLSPELAQRCESCHIDRAPRGWEQPS 257
Query: 110 THCPLTIEYD 119
H P+
Sbjct: 258 DHTPVVAALR 267
>gi|238063778|ref|ZP_04608487.1| exodeoxyribonuclease III Xth [Micromonospora sp. ATCC 39149]
gi|237885589|gb|EEP74417.1| exodeoxyribonuclease III Xth [Micromonospora sp. ATCC 39149]
Length = 271
Score = 84.5 bits (207), Expect = 4e-15, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 36/134 (26%), Gaps = 18/134 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L+ +Q++ G+P + GDFN D + ++
Sbjct: 134 ALRDALEQELTGGLPLAVCGDFNVAPTDADVWDPALFATSTHVTPAERDALAALRDLELS 193
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ + R + D + ++ + + S
Sbjct: 194 DVVPTPMKGPHPYTYWDYRAGMFHQNKGMRIDLVYASAPFARAVRAAYVDREARKGKAPS 253
Query: 110 THCPLTIEYDFEKG 123
H P+ ++ D
Sbjct: 254 DHAPVVVDADLTPA 267
>gi|326316303|ref|YP_004233975.1| exodeoxyribonuclease III [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323373139|gb|ADX45408.1| exodeoxyribonuclease III [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 258
Score = 84.5 bits (207), Expect = 4e-15, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L +W +++ V+ GDFN D ++
Sbjct: 128 DALHRWVREELLAHPRLVLVGDFNVAPEDRDSFDPVGLKDTIHHTVEERTHFQSLLQLGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + D+ + + + +
Sbjct: 188 TDAYRMFDQPEKSFSWWDYRMLGFQKNRGLRIDHILVSEALRGQVTACTIDRQPRKNPQP 247
Query: 109 STHCPLTIEY 118
S H P+
Sbjct: 248 SDHAPVVATL 257
>gi|39935926|ref|NP_948202.1| exodeoxyribonuclease III [Rhodopseudomonas palustris CGA009]
gi|39649780|emb|CAE28302.1| exodeoxyribonuclease III [Rhodopseudomonas palustris CGA009]
Length = 303
Score = 84.5 bits (207), Expect = 4e-15, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 36/136 (26%), Gaps = 18/136 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
L+ +A Q++KT P ++AGDFN + + F +
Sbjct: 168 MARLRDYAQQRLKTEEPLILAGDFNVIPQAEDVHNPAAWTEDALFRPETRESFQTLLGLG 227
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
++ + L+ + K
Sbjct: 228 LTDALRATTDAPGQYTFWDYQAGAWQKNWGIRIDHLLLSPQAADRLRHVGIDSYVRNWEK 287
Query: 108 LSTHCPLTIEYDFEKG 123
S H P+ ++D E
Sbjct: 288 PSDHVPVWADFDLEAA 303
>gi|83745850|ref|ZP_00942907.1| Exodeoxyribonuclease III [Ralstonia solanacearum UW551]
gi|83727540|gb|EAP74661.1| Exodeoxyribonuclease III [Ralstonia solanacearum UW551]
Length = 318
Score = 84.5 bits (207), Expect = 4e-15, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 31/130 (23%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
L+ W ++ ++ GDFN + D +
Sbjct: 187 ALQDWLKTEMDAHPRLMLLGDFNIAPDDRDVHDPKKWEGMNLVSPEERAAFRALESAGLV 246
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q + R + + D+ + + S + + S
Sbjct: 247 DAFRMFEQADKLFSWWDYRLFAFKRNAGLRIDHILLSPELAQRCESCHIDRVPRGWEQPS 306
Query: 110 THCPLTIEYD 119
H P+
Sbjct: 307 DHTPVVAALR 316
>gi|30248054|ref|NP_840124.1| exodeoxyribonuclease III:exodeoxyribonuclease III xth [Nitrosomonas
europaea ATCC 19718]
gi|30179939|emb|CAD83934.1| Exodeoxyribonuclease III:Exodeoxyribonuclease III xth [Nitrosomonas
europaea ATCC 19718]
Length = 254
Score = 84.5 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 36/129 (27%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPD--- 49
L ++ Q+ + GDFN D ++ +
Sbjct: 125 QLNRFLQQQRACYGKVALLGDFNIAPEDRDVYDPEAWRGQVLCSEPERQAFRGLLDTGFV 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q +++ R + + D+ + + + L + + S
Sbjct: 185 DSFHLFEQPEKTYTWWDYRMMAFRRNRGLRIDHILLSHEMADRCTIWQVDKLPRKLERPS 244
Query: 110 THCPLTIEY 118
H P+ +E
Sbjct: 245 DHAPVLVEL 253
>gi|192291575|ref|YP_001992180.1| exodeoxyribonuclease III Xth [Rhodopseudomonas palustris TIE-1]
gi|192285324|gb|ACF01705.1| exodeoxyribonuclease III Xth [Rhodopseudomonas palustris TIE-1]
Length = 263
Score = 84.5 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 36/136 (26%), Gaps = 18/136 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
L+ +A Q++KT P ++AGDFN + + F +
Sbjct: 128 MARLRDYAQQRLKTEEPLILAGDFNVIPQAEDVHNPAAWTEDALFRPETRESFQTLLGLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
++ + L+ + K
Sbjct: 188 LTDALRATTDAPGQYTFWDYQAGAWQKNWGIRIDHLLLSPQAADRLRHVGIDSYVRNWEK 247
Query: 108 LSTHCPLTIEYDFEKG 123
S H P+ ++D E
Sbjct: 248 PSDHVPVWADFDLEAA 263
>gi|209520714|ref|ZP_03269463.1| exodeoxyribonuclease III Xth [Burkholderia sp. H160]
gi|209498839|gb|EDZ98945.1| exodeoxyribonuclease III Xth [Burkholderia sp. H160]
Length = 258
Score = 84.5 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 32/130 (24%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ L W + + GD+N D +
Sbjct: 128 DALHDWLSTETTLHPKLALLGDYNIAPEDRDVHDPKAWEGQNLVSPEERAAFVRLIALGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+F Q ++ R + + D+ S + D + + +
Sbjct: 188 LDAFRQFEQPEKIYSWWDYRMMAFRRNAGLRIDHILLSKALSDICTACDVDKVPRKWDQP 247
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 248 SDHAPVFAQL 257
>gi|159903026|ref|YP_001550370.1| exodeoxyribonuclease III [Prochlorococcus marinus str. MIT 9211]
gi|159888202|gb|ABX08416.1| exodeoxyribonuclease III [Prochlorococcus marinus str. MIT 9211]
Length = 277
Score = 84.1 bits (206), Expect = 5e-15, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 18/132 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD--G 50
LK + D + + P + GDFN + + + +
Sbjct: 135 LKNYLDCQSERDEPICLLGDFNIALEDKDIHNPNRLSGGIMASEPERKALRKLLGERLED 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ F Q R+ + D+ + S K S
Sbjct: 195 IFRIFEQGTNHWSWWDYRSGAWDRDRGWRIDHIYLSKELINHSKSCVIHKKSRGNIKPSD 254
Query: 111 HCPLTIEYDFEK 122
H P+ +E D+
Sbjct: 255 HAPVLVEIDWPS 266
>gi|309782573|ref|ZP_07677296.1| exodeoxyribonuclease III [Ralstonia sp. 5_7_47FAA]
gi|308918664|gb|EFP64338.1| exodeoxyribonuclease III [Ralstonia sp. 5_7_47FAA]
Length = 269
Score = 84.1 bits (206), Expect = 5e-15, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
E L+ W ++ ++ GDFN D Q
Sbjct: 137 EALQAWLASEMAANPRLMLLGDFNIAPEDRDVHDPKKWEGQNLVSPEERAAFRAMQAAGL 196
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F QE + R + D+ + + S + +
Sbjct: 197 VDAFRMFEQEDKLFSWWDYRMFGFKRNAGLRIDHIMLSPELAKLCESCHIDRVPRTWEQP 256
Query: 109 STHCPLTIEYD 119
S H P+
Sbjct: 257 SDHTPVVAALR 267
>gi|17546312|ref|NP_519714.1| exodeoxyribonuclease III protein [Ralstonia solanacearum GMI1000]
gi|17428609|emb|CAD15295.1| probable exodeoxyribonuclease III protein [Ralstonia solanacearum
GMI1000]
Length = 269
Score = 84.1 bits (206), Expect = 5e-15, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 32/130 (24%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
L+ W ++ ++ GDFN + D +
Sbjct: 138 ALQDWLQAEMAAHPRLMLLGDFNIAPDDRDVHDPKKWEGMNLVSPEERAAFRALESAGLV 197
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F QE + R + + D+ + + S + + S
Sbjct: 198 DAFRMFEQEDKLFSWWDYRLFAFRRNAGLRIDHILLSPNLARLCESCHIDRVPRGWEQPS 257
Query: 110 THCPLTIEYD 119
H P+
Sbjct: 258 DHTPVVAALR 267
>gi|207742979|ref|YP_002259371.1| exodeoxyribonuclease III protein [Ralstonia solanacearum IPO1609]
gi|206594376|emb|CAQ61303.1| exodeoxyribonuclease III protein [Ralstonia solanacearum IPO1609]
Length = 269
Score = 84.1 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 31/130 (23%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
L+ W ++ ++ GDFN + D +
Sbjct: 138 ALQDWLKTEMDAHPRLMLLGDFNIAPDDRDVHDPKKWEGMNLVSPEERAAFRALESAGLV 197
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q + R + + D+ + + S + + S
Sbjct: 198 DAFRMFEQADKLFSWWDYRLFAFKRNAGLRIDHILLSPELAQRCESCHIDRVPRGWEQPS 257
Query: 110 THCPLTIEYD 119
H P+
Sbjct: 258 DHTPVVAALR 267
>gi|145589433|ref|YP_001156030.1| exodeoxyribonuclease III Xth [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145047839|gb|ABP34466.1| Exodeoxyribonuclease III [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 282
Score = 84.1 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMD 47
+ L+ W Q++++ + GDFN D K+
Sbjct: 149 MQSLEDWLVQELQSNTRLALLGDFNIAPADADVHDPKAWEGQNLVSPPERAAFESLIKLG 208
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F Q ++ R + D+ + L +
Sbjct: 209 LCDSFRIFEQTPKTYSWWDYRMMGFRRNAGMRIDHILLSDPLKEKCSASFVDKLPRSWEQ 268
Query: 108 LSTHCPLTIEY 118
S H P+ E
Sbjct: 269 PSDHAPVVAEI 279
>gi|330817688|ref|YP_004361393.1| Exodeoxyribonuclease III Xth [Burkholderia gladioli BSR3]
gi|327370081|gb|AEA61437.1| Exodeoxyribonuclease III Xth [Burkholderia gladioli BSR3]
Length = 258
Score = 84.1 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 36/131 (27%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W ++ + GD+N D +M
Sbjct: 128 DALRAWLKDELTRHPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAALLEMGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + D+ + ++ + + + +
Sbjct: 188 VDAFRRFEQPEKTFTWWDYRMMGFRRNAGLRIDHILLSPALAGTLTACEVDRVPRTWEQP 247
Query: 109 STHCPLTIEYD 119
S H P+ +
Sbjct: 248 SDHTPVIATIE 258
>gi|170077908|ref|YP_001734546.1| exodeoxyribonuclease III [Synechococcus sp. PCC 7002]
gi|169885577|gb|ACA99290.1| exodeoxyribonuclease III [Synechococcus sp. PCC 7002]
Length = 224
Score = 84.1 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 30/129 (23%), Gaps = 17/129 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-----------------MDPD 49
E LK + + K ++ GDFN +
Sbjct: 96 EVLKAYLKELCKDDREILMCGDFNIALEDRDIYMPKKPDHIMASPAERETLTAILDFGFQ 155
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ +F QE + R + D+ K S
Sbjct: 156 DVFRKFNQEADQFSWWDYRTRGFSRNRGWRIDHIYLTEKLYGQAKRCWIDREPRGWEKPS 215
Query: 110 THCPLTIEY 118
H P+ +E
Sbjct: 216 DHTPVIVEL 224
>gi|284053675|ref|ZP_06383885.1| exodeoxyribonuclease III [Arthrospira platensis str. Paraca]
gi|291570470|dbj|BAI92742.1| exodeoxyribonuclease III [Arthrospira platensis NIES-39]
Length = 263
Score = 84.1 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 32/129 (24%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPD 49
L+ + Q + I GDFN + + +
Sbjct: 133 RLRDYLQQMLIKYPHLCICGDFNIAPEDRDIYNPQNRENHIMASAAERQALDAIANLGLA 192
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+F Q+ R S D+ + ++ + K S
Sbjct: 193 DGFRKFTQDGGHFTWWDYRAASFTRNRGWRIDHHYLSPGLYENAIACYIDTEPRTQPKPS 252
Query: 110 THCPLTIEY 118
H P+ +E
Sbjct: 253 DHAPVILEI 261
>gi|254251949|ref|ZP_04945267.1| Exonuclease III [Burkholderia dolosa AUO158]
gi|124894558|gb|EAY68438.1| Exonuclease III [Burkholderia dolosa AUO158]
Length = 281
Score = 84.1 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 18/129 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L W +++ + GDFN D ++
Sbjct: 151 DALHAWLAAEMQRYPKLALLGDFNIAPEDRDVHDPAKWEGQNLVSPQERAHFAKLIELGF 210
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S +
Sbjct: 211 VDAFRRFEQPEKTFTWWDYRMFAFRRNAGLRIDHILLSPALADTCTSCVVDRAPRTWEQP 270
Query: 109 STHCPLTIE 117
S H P+
Sbjct: 271 SDHTPVVAT 279
>gi|332531041|ref|ZP_08406960.1| exodeoxyribonuclease III Xth [Hylemonella gracilis ATCC 19624]
gi|332039522|gb|EGI75929.1| exodeoxyribonuclease III Xth [Hylemonella gracilis ATCC 19624]
Length = 268
Score = 83.7 bits (205), Expect = 7e-15, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 35/132 (26%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMD 47
+ L+ ++ T V+ GD+N + D +
Sbjct: 135 MDALRAQVQAELATHARLVLLGDYNITPDDRDSYDPEGLRETIHHTTQEREQFKALLALG 194
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F Q ++S R + D+ ++ L + +
Sbjct: 195 LHDAYRMFEQPEKSYSWWDYRMLGFQKNRGLRIDHILVSEALKPAVQGCTIDRLPRKNKQ 254
Query: 108 LSTHCPLTIEYD 119
S H P+ +E
Sbjct: 255 PSDHAPVLLELQ 266
>gi|241663220|ref|YP_002981580.1| exodeoxyribonuclease III Xth [Ralstonia pickettii 12D]
gi|240865247|gb|ACS62908.1| exodeoxyribonuclease III Xth [Ralstonia pickettii 12D]
Length = 269
Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
E L+ W ++ ++ GDFN D Q
Sbjct: 137 EALQAWLTSEMAANPRLMLLGDFNIAPEDRDVHDPKKWEGQNLVSPEERAAFRAMQAAGL 196
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F QE + R + D+ + + S + +
Sbjct: 197 VDAFRMFEQEDKLFSWWDYRMFGFKRNAGLRIDHIMLSPELAKLCESCHIDRVPRTWEQP 256
Query: 109 STHCPLTIEYD 119
S H P+
Sbjct: 257 SDHTPVVAALR 267
>gi|299066602|emb|CBJ37792.1| EXODEOXYRIBONUCLEASE III [Ralstonia solanacearum CMR15]
Length = 269
Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 32/130 (24%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
L+ W ++ ++ GDFN + D +
Sbjct: 138 ALQAWLQAEMAAHPRLMLLGDFNIAPDDRDVHDPKKWEGMNLVSPEERAAFRALESAGLV 197
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F QE + R + + D+ D + S + + S
Sbjct: 198 DAFRMFEQEDKLFSWWDYRLFAFRRNAGLRIDHILLSPDLARLCESCHIDRVPRGWEQPS 257
Query: 110 THCPLTIEYD 119
H P+
Sbjct: 258 DHTPVVAALR 267
>gi|77163744|ref|YP_342269.1| exodeoxyribonuclease III xth [Nitrosococcus oceani ATCC 19707]
gi|76882058|gb|ABA56739.1| Exodeoxyribonuclease III [Nitrosococcus oceani ATCC 19707]
Length = 237
Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 30/129 (23%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
+K + + + ++ GDFN D +
Sbjct: 108 RIKDYLQEALVEYPKLIVLGDFNVAPADQDVHDPDIWHETILCSTPEREALKEILALGFQ 167
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F QE +S R + + D R ++ S
Sbjct: 168 DSFRLFEQEAQSFSWWDYRGGAFRRNRGLRIDLILISKALVPKCTGCVIDKEPRRLTRPS 227
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 228 DHAPVIATF 236
>gi|76810233|ref|YP_334150.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1710b]
gi|76579686|gb|ABA49161.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1710b]
Length = 322
Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W +++ + GD+N D +
Sbjct: 192 DALQAWLKDELQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAQLVALGF 251
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S + +
Sbjct: 252 VDAFRRFEQPEKTFTWWDYRMLAFRRNAGLRIDHILLSPALAETCTSCTVDRVPRTWEQP 311
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 312 SDHTPVVAQL 321
>gi|254436254|ref|ZP_05049761.1| exodeoxyribonuclease III [Nitrosococcus oceani AFC27]
gi|207089365|gb|EDZ66637.1| exodeoxyribonuclease III [Nitrosococcus oceani AFC27]
Length = 254
Score = 83.7 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 30/129 (23%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
+K + + + ++ GDFN D +
Sbjct: 125 RIKDYLQEALVEYPKLIVLGDFNVAPADQDVHDPDIWHETILCSTPEREALKEILALGFQ 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F QE +S R + + D R ++ S
Sbjct: 185 DSFRLFEQEAQSFSWWDYRGGAFRRNRGLRIDLILISKALVPKCTGCVIDKEPRRLTRPS 244
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 245 DHAPVIATF 253
>gi|221198450|ref|ZP_03571496.1| exodeoxyribonuclease III [Burkholderia multivorans CGD2M]
gi|221208601|ref|ZP_03581602.1| exodeoxyribonuclease III [Burkholderia multivorans CGD2]
gi|221171592|gb|EEE04038.1| exodeoxyribonuclease III [Burkholderia multivorans CGD2]
gi|221182382|gb|EEE14783.1| exodeoxyribonuclease III [Burkholderia multivorans CGD2M]
Length = 272
Score = 83.3 bits (204), Expect = 9e-15, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L W +++ + GD+N D ++
Sbjct: 142 DALHAWLRAEMQRYPKLALLGDYNIAPEDRDVHDPAKWEGENLVSPQERAHFAKLIELGF 201
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + S S + + +
Sbjct: 202 VDAFRRFEQPEKTFTWWDYRMFAFRRNAGLRIDHILLSPALAGSCTSCEVDRVPRTWEQP 261
Query: 109 STHCPLTIEY 118
S H P+
Sbjct: 262 SDHTPVVAVL 271
>gi|225023438|ref|ZP_03712630.1| hypothetical protein EIKCOROL_00296 [Eikenella corrodens ATCC
23834]
gi|224943787|gb|EEG24996.1| hypothetical protein EIKCOROL_00296 [Eikenella corrodens ATCC
23834]
Length = 255
Score = 83.3 bits (204), Expect = 9e-15, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 33/136 (24%), Gaps = 19/136 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FW 43
QQ L ++ ++ V+ GDFN + D
Sbjct: 120 KQQWFAALAEFIRSELAQYPELVLLGDFNIAPADLDVYDPEKWQGKILCSAEERAWFQTL 179
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ L R + R + D+ + +
Sbjct: 180 LDLGLTDSLRRLHPAEPLYTWWDYRMNMFRRKLGLRIDHILASQALLPRLAAAGVDTAPR 239
Query: 104 RRSKLSTHCPLTIEYD 119
+ S H P+ E++
Sbjct: 240 ALERPSDHAPVWAEFE 255
>gi|124025252|ref|YP_001014368.1| exodeoxyribonuclease III [Prochlorococcus marinus str. NATL1A]
gi|123960320|gb|ABM75103.1| exodeoxyribonuclease III [Prochlorococcus marinus str. NATL1A]
Length = 275
Score = 83.3 bits (204), Expect = 9e-15, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 39/135 (28%), Gaps = 18/135 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-----------QKMDPD-------G 50
L+ + + K P + GDFN +++ D
Sbjct: 135 LQVYLREINKNNTPICLLGDFNIAPEDRDIHTPSRYEESIMASSKERELLKDALGGELED 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ F +++ R+ + D+ D S R K S
Sbjct: 195 VFRIFEPGEKNWSWWDYRHSAWERDKGWRIDHIYLTEDILSCANSCWIDKEQRSREKPSD 254
Query: 111 HCPLTIEYDFEKGNV 125
H P+ ++ ++ ++
Sbjct: 255 HAPVVVDINWPPSDI 269
>gi|72383653|ref|YP_293008.1| exodeoxyribonuclease III [Prochlorococcus marinus str. NATL2A]
gi|72003503|gb|AAZ59305.1| Exodeoxyribonuclease III [Prochlorococcus marinus str. NATL2A]
Length = 275
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 39/135 (28%), Gaps = 18/135 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-----------QKMDPD-------G 50
L+ + + K P + GDFN +++ D
Sbjct: 135 LQVYLREINKNNTPICLLGDFNIAPEDRDIHTPSRYEESIMASSKERELLKDALGGELED 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ F +++ R+ + D+ D S R K S
Sbjct: 195 VFRIFEPGEKNWSWWDYRHSAWERDKGWRIDHIYLTEDILSCANSCWIDKEQRSREKPSD 254
Query: 111 HCPLTIEYDFEKGNV 125
H P+ ++ ++ ++
Sbjct: 255 HAPVVVDINWPPSDI 269
>gi|300691333|ref|YP_003752328.1| exodeoxyribonuclease III [Ralstonia solanacearum PSI07]
gi|299078393|emb|CBJ51043.1| EXODEOXYRIBONUCLEASE III [Ralstonia solanacearum PSI07]
Length = 269
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 31/130 (23%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
L+ W ++ ++ GDFN + D +
Sbjct: 138 ALQDWLKAEMAAHPRLMLLGDFNIAPDDRDVHDPKKWEGMNLVSPEERAAFRALEGAGLV 197
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q + R + + D+ D + S + + S
Sbjct: 198 DAFRMFDQADKLFSWWDYRLFAFKRNAGLRIDHILLSPDLARLCESCHIDRVPRGWEQPS 257
Query: 110 THCPLTIEYD 119
H P+
Sbjct: 258 DHTPVVAALR 267
>gi|53719925|ref|YP_108911.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei K96243]
gi|167824992|ref|ZP_02456463.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 9]
gi|226195468|ref|ZP_03791056.1| exodeoxyribonuclease III [Burkholderia pseudomallei Pakistan 9]
gi|52210339|emb|CAH36318.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei K96243]
gi|225932428|gb|EEH28427.1| exodeoxyribonuclease III [Burkholderia pseudomallei Pakistan 9]
Length = 258
Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W +++ + GD+N D +
Sbjct: 128 DALRAWLKDELQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAQLVALGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S + +
Sbjct: 188 VDAFRRFEQPEKTFTWWDYRMLAFRRNAGLRIDHILLSPALAETCTSCTVDRVPRTWEQP 247
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 248 SDHTPVVAQL 257
>gi|134296326|ref|YP_001120061.1| exodeoxyribonuclease III [Burkholderia vietnamiensis G4]
gi|134139483|gb|ABO55226.1| Exodeoxyribonuclease III [Burkholderia vietnamiensis G4]
Length = 271
Score = 83.0 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L W +++ + GD+N D ++
Sbjct: 141 DALHAWLGAELQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAKLLELGF 200
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S + + +
Sbjct: 201 VDAFRRFEQPEKTFTWWDYRMFAFRRNAGLRIDHILLSPALAATCTSCEVDRVPRTWEQP 260
Query: 109 STHCPLTI 116
S H P+
Sbjct: 261 SDHTPVVA 268
>gi|108759762|ref|YP_633331.1| exodeoxyribonuclease III [Myxococcus xanthus DK 1622]
gi|108463642|gb|ABF88827.1| exodeoxyribonuclease III [Myxococcus xanthus DK 1622]
Length = 256
Score = 83.0 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L+++ D + K P V+ GD+N I D
Sbjct: 126 RLRRYLDTRHKPDEPLVLGGDWNVAPEDIDTYDPKLWEGQTLFTLKERDALQRLGAFGLS 185
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
R + R + D+ + + D + + + S
Sbjct: 186 DAFRRLHPGVQKFTWWDYRMLGFPKNLGLRIDHLYVTAPVAERLTVVDVDREERKGKQPS 245
Query: 110 THCPLTIEYD 119
H P+ +E
Sbjct: 246 DHAPVWLELR 255
>gi|148240155|ref|YP_001225542.1| exodeoxyribonuclease III [Synechococcus sp. WH 7803]
gi|147848694|emb|CAK24245.1| Exodeoxyribonuclease III [Synechococcus sp. WH 7803]
Length = 276
Score = 83.0 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 34/130 (26%), Gaps = 18/130 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLL 52
L+++ P + GDFN + D Q + +
Sbjct: 135 LERYLRAAETRDEPLCVVGDFNIGPEARDLHDPERLTGGIMASEAERKALVQVLGSNLGD 194
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLST 110
E S +S + I + + S + R + S
Sbjct: 195 AFRLFEPGSGHWSWWDYRSGAWNRDSGWRIDHIYISSDLQELARSCSIDKEERGREQPSD 254
Query: 111 HCPLTIEYDF 120
H P+ ++ +
Sbjct: 255 HAPVVVDLAW 264
>gi|54296672|ref|YP_123041.1| hypothetical protein lpp0703 [Legionella pneumophila str. Paris]
gi|53750457|emb|CAH11851.1| hypothetical protein lpp0703 [Legionella pneumophila str. Paris]
Length = 256
Score = 83.0 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 38/135 (28%), Gaps = 21/135 (15%)
Query: 7 EWLK---KWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQK 45
+WL ++ + ++ + GDFN D +
Sbjct: 122 DWLNKVTRFIENQLSIYSKVAVVGDFNIAPEDRDVHDPVEWEGCVLVSPAERQAFMKILE 181
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ F QE+++ R + + D+ + + +
Sbjct: 182 LGLHDSFRNFAQEEKAFSWWDYRAAAFRRNRGLRIDHVLLSHELNALCRQSKIDKEPRKA 241
Query: 106 SKLSTHCPLTIEYDF 120
+ S H P+ +E +
Sbjct: 242 ERPSDHAPVWVELEL 256
>gi|170733499|ref|YP_001765446.1| exodeoxyribonuclease III Xth [Burkholderia cenocepacia MC0-3]
gi|169816741|gb|ACA91324.1| exodeoxyribonuclease III Xth [Burkholderia cenocepacia MC0-3]
Length = 258
Score = 83.0 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W +++ + GD+N D ++
Sbjct: 128 DALQAWLRTELQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAQLIELGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S + +
Sbjct: 188 VDAFRRFEQPEKTFTWWDYRMMAFRRNAGLRIDHILLSPALAATCASCEVDRTPRTWEQP 247
Query: 109 STHCPLTI 116
S H P+
Sbjct: 248 SDHTPVVA 255
>gi|33866339|ref|NP_897898.1| exodeoxyribonuclease III [Synechococcus sp. WH 8102]
gi|33639314|emb|CAE08322.1| exodeoxyribonuclease III [Synechococcus sp. WH 8102]
Length = 278
Score = 83.0 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 35/133 (26%), Gaps = 18/133 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
LK++ D + + G P + GDFN + + D
Sbjct: 135 LKRYLDAQAERGEPLCMVGDFNIALEARDIHDPDRLSGSVMASDAERDALREALGNRLQD 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + R + D+ + S + S
Sbjct: 195 AFRMFEPDAGHWSWWDYRTGAWDRDRGWRIDHIYLCEELMGLARSCSIHKQLRGNVQPSD 254
Query: 111 HCPLTIEYDFEKG 123
H P++++ D+
Sbjct: 255 HAPVSVDLDWPPA 267
>gi|254247764|ref|ZP_04941085.1| Exonuclease III [Burkholderia cenocepacia PC184]
gi|124872540|gb|EAY64256.1| Exonuclease III [Burkholderia cenocepacia PC184]
Length = 258
Score = 83.0 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W +++ + GD+N D ++
Sbjct: 128 DALQAWLRTELQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAQLIELGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S + +
Sbjct: 188 VDAFRRFEQPEKTFTWWDYRMMAFRRNAGLRIDHILLSPALAATCASCEVDRTPRTWEQP 247
Query: 109 STHCPLTI 116
S H P+
Sbjct: 248 SDHTPVVA 255
>gi|107028675|ref|YP_625770.1| exodeoxyribonuclease III (xth) [Burkholderia cenocepacia AU 1054]
gi|116690166|ref|YP_835789.1| exodeoxyribonuclease III Xth [Burkholderia cenocepacia HI2424]
gi|105897839|gb|ABF80797.1| Exodeoxyribonuclease III [Burkholderia cenocepacia AU 1054]
gi|116648255|gb|ABK08896.1| Exodeoxyribonuclease III [Burkholderia cenocepacia HI2424]
Length = 258
Score = 83.0 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 36/128 (28%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W +++ + GD+N D ++
Sbjct: 128 DALQAWLRTELQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAQLIELGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S + + +
Sbjct: 188 VDAFRRFEQPEKTFTWWDYRMMAFRRNAGLRIDHILLSPALAATCASCEVDRVPRTWEQP 247
Query: 109 STHCPLTI 116
S H P+
Sbjct: 248 SDHTPVVA 255
>gi|300703904|ref|YP_003745506.1| exodeoxyribonuclease III [Ralstonia solanacearum CFBP2957]
gi|299071567|emb|CBJ42891.1| EXODEOXYRIBONUCLEASE III [Ralstonia solanacearum CFBP2957]
Length = 269
Score = 83.0 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 31/130 (23%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
L+ W ++ ++ GDFN + D +
Sbjct: 138 ALQDWLKAEMVAHPRLMLLGDFNIAPDDRDVHDPKKWEGMNLVSPEERAAFRALESAGLV 197
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q + R + + D+ + + S + + S
Sbjct: 198 DAFRMFDQADKLFSWWDYRLFAFRRNAGLRIDHILLSPELAQRCESCHIDRVPRGWEQPS 257
Query: 110 THCPLTIEYD 119
H P+
Sbjct: 258 DHTPVVAALR 267
>gi|117925756|ref|YP_866373.1| exodeoxyribonuclease III [Magnetococcus sp. MC-1]
gi|117609512|gb|ABK44967.1| Exodeoxyribonuclease III [Magnetococcus sp. MC-1]
Length = 257
Score = 83.0 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 30/128 (23%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPDG 50
L+ + ++ + V+ GD+N + D + +
Sbjct: 128 LQSFVQAQLASYPQLVVLGDYNIAPDDRDVHDVSFWAGKILVSPPERSAYQALCGLGLTD 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
E R S + D+ + + + S
Sbjct: 188 AFRHLQPEGGYFSWWDYRLGSFQRNMGVRIDHLLSSPALTAKLTHCHIDREPRGWERPSD 247
Query: 111 HCPLTIEY 118
H P+ Y
Sbjct: 248 HAPVIATY 255
>gi|316933979|ref|YP_004108961.1| exodeoxyribonuclease III Xth [Rhodopseudomonas palustris DX-1]
gi|315601693|gb|ADU44228.1| exodeoxyribonuclease III Xth [Rhodopseudomonas palustris DX-1]
Length = 263
Score = 83.0 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 34/136 (25%), Gaps = 18/136 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
L+ +A Q+++T P ++AGDFN + F +
Sbjct: 128 MARLRDYAQQRLRTEEPLILAGDFNVIPQPGDVHNPAAWTEDALFRPETRESFQALLGLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
++ + L+ + K
Sbjct: 188 FTDALRATTDAPGQYTFWDYQAGAWQKNWGLRIDHLLLSPQAADRLRHVGIDSYVRNWEK 247
Query: 108 LSTHCPLTIEYDFEKG 123
S H P+ + D E
Sbjct: 248 PSDHVPVWADLDLEAA 263
>gi|78066923|ref|YP_369692.1| exodeoxyribonuclease III [Burkholderia sp. 383]
gi|77967668|gb|ABB09048.1| Exodeoxyribonuclease III [Burkholderia sp. 383]
Length = 258
Score = 83.0 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W +++ + GD+N D ++
Sbjct: 128 DALQAWLRTELQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAQLIELGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S + +
Sbjct: 188 VDAFRRFEQPEKTFTWWDYRMMAFRRNAGLRIDHVLLSPALAETCTSCEVDRTPRTWEQP 247
Query: 109 STHCPLTI 116
S H P+
Sbjct: 248 SDHTPVVA 255
>gi|238561644|ref|ZP_00441777.2| exodeoxyribonuclease III [Burkholderia mallei GB8 horse 4]
gi|254200314|ref|ZP_04906680.1| exodeoxyribonuclease III [Burkholderia mallei FMH]
gi|254209389|ref|ZP_04915735.1| exodeoxyribonuclease III [Burkholderia mallei JHU]
gi|147749910|gb|EDK56984.1| exodeoxyribonuclease III [Burkholderia mallei FMH]
gi|147750162|gb|EDK57233.1| exodeoxyribonuclease III [Burkholderia mallei JHU]
gi|238524267|gb|EEP87701.1| exodeoxyribonuclease III [Burkholderia mallei GB8 horse 4]
Length = 269
Score = 82.6 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W +++ + GD+N D +
Sbjct: 139 DALQAWLKDELQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAQLVALGF 198
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S + +
Sbjct: 199 VDAFRRFEQPEKTFTWWDYRMLAFRRNAGLRIDHILLSPALAETCTSCTVDRVPRTWEQP 258
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 259 SDHTPVVAQL 268
>gi|88807632|ref|ZP_01123144.1| exodeoxyribonuclease III [Synechococcus sp. WH 7805]
gi|88788846|gb|EAR20001.1| exodeoxyribonuclease III [Synechococcus sp. WH 7805]
Length = 276
Score = 82.6 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDP--DG 50
L+++ P + GDFN + D Q +
Sbjct: 135 LERYLRSAEARDEPLCVVGDFNIGPEARDLHDPDRLTGGIMASEAEREALHQVLGSNLGD 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F R+ + D+ D S + R + S
Sbjct: 195 AFRLFEPGSGHWSWWDYRSGAWNRDSGWRIDHIYLSRDLQELARSCSIDKQERGREQPSD 254
Query: 111 HCPLTIEYDFE 121
H P+ ++ ++
Sbjct: 255 HAPVMVDLAWD 265
>gi|209523548|ref|ZP_03272102.1| exodeoxyribonuclease III [Arthrospira maxima CS-328]
gi|209495953|gb|EDZ96254.1| exodeoxyribonuclease III [Arthrospira maxima CS-328]
Length = 263
Score = 82.6 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 33/133 (24%), Gaps = 21/133 (15%)
Query: 7 EWLK---KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------K 45
+WL + Q + I GDFN + +
Sbjct: 129 QWLNRLGDYLQQMLIKYPHLCICGDFNIAPEDRDIYNPQNRENHIMASAAERQALDAIAN 188
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ +F Q+ R S D+ + ++ +
Sbjct: 189 LGLADGFRKFTQDGGHFTWWDYRAASFTRNRGWRIDHHYLSPGLYQNAIACYIDTEPRTQ 248
Query: 106 SKLSTHCPLTIEY 118
K S H P+ +E
Sbjct: 249 PKPSDHAPVILEI 261
>gi|71275821|ref|ZP_00652105.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Xylella
fastidiosa Dixon]
gi|71902300|ref|ZP_00684290.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Xylella
fastidiosa Ann-1]
gi|170730198|ref|YP_001775631.1| exodeoxyribonuclease III [Xylella fastidiosa M12]
gi|71163399|gb|EAO13117.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Xylella
fastidiosa Dixon]
gi|71727953|gb|EAO30176.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Xylella
fastidiosa Ann-1]
gi|167964991|gb|ACA12001.1| exodeoxyribonuclease III [Xylella fastidiosa M12]
Length = 264
Score = 82.6 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 19/133 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
+ + W ++++ V+ GDFN ++ D +
Sbjct: 126 DAVYHWLAEELQRYPRLVVLGDFNIAPDARDVYDPQVWNEDHILTSTTERAALDKLLGLG 185
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
Q+ R S + D V+ + +
Sbjct: 186 LHDGFRLHHQDAGIFSWWDYRQASFRRNRGLRIDLTLVSEALRAQAVASGIDRVPRGWER 245
Query: 108 LSTHCPLTIEYDF 120
S H P IE
Sbjct: 246 PSDHAPAWIELAL 258
>gi|167837200|ref|ZP_02464083.1| exodeoxyribonuclease III [Burkholderia thailandensis MSMB43]
Length = 258
Score = 82.6 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 36/130 (27%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W ++++ + GD+N D +
Sbjct: 128 DALQAWLKRELQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAQLVALGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S + +
Sbjct: 188 VDAFRRFDQPEKTFTWWDYRMLAFRRNAGLRIDHILLSPALAETCTSCTVDRVPRTWEQP 247
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 248 SDHTPVVAQI 257
>gi|167581292|ref|ZP_02374166.1| exodeoxyribonuclease III [Burkholderia thailandensis TXDOH]
Length = 258
Score = 82.6 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W +++ + GD+N D +
Sbjct: 128 DALQAWLKNELQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAQLVALGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S +
Sbjct: 188 VDAFRRFDQPEKTFTWWDYRMLAFRRNAGLRIDHILLSPALAETCTSCTVDRAPRAWEQP 247
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 248 SDHTPVVAQL 257
>gi|206560581|ref|YP_002231346.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
cenocepacia J2315]
gi|198036623|emb|CAR52521.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
cenocepacia J2315]
Length = 258
Score = 82.6 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 36/128 (28%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W +++ + GD+N D ++
Sbjct: 128 DALQAWLRTELQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAQLIELGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + + S + +
Sbjct: 188 VDAFRRFEQPEKTFTWWDYRMMAFRRNAGLRIDHILLSPELAATCASCEVDRTPRTWEQP 247
Query: 109 STHCPLTI 116
S H P+
Sbjct: 248 SDHTPVVA 255
>gi|161524301|ref|YP_001579313.1| exodeoxyribonuclease III Xth [Burkholderia multivorans ATCC 17616]
gi|221214798|ref|ZP_03587767.1| exodeoxyribonuclease III [Burkholderia multivorans CGD1]
gi|160341730|gb|ABX14816.1| exodeoxyribonuclease III Xth [Burkholderia multivorans ATCC 17616]
gi|221165337|gb|EED97814.1| exodeoxyribonuclease III [Burkholderia multivorans CGD1]
Length = 272
Score = 82.6 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L W +++ + GD+N D ++
Sbjct: 142 DALHAWLRTEMQRYPKLALLGDYNIAPEDRDVHDPAKWEGENLVSPQERAHFAKLIELGF 201
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + S S + + +
Sbjct: 202 VDAFRRFEQPEKTFTWWDYRMFAFRRNAGLRIDHILLSPALAGSCTSCEVDRVPRTWEQP 261
Query: 109 STHCPLTI 116
S H P+
Sbjct: 262 SDHTPVVA 269
>gi|114330240|ref|YP_746462.1| exodeoxyribonuclease III Xth [Nitrosomonas eutropha C91]
gi|114307254|gb|ABI58497.1| Exodeoxyribonuclease III [Nitrosomonas eutropha C91]
Length = 254
Score = 82.6 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPD---G 50
L + Q+ + GDFN D ++ +
Sbjct: 126 LNSFLQQERTRYGKVALLGDFNIAPEDRDVYDPEAWKGQVLCSEAERQAFRGLLDTGFVD 185
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q ++ R + + D+ + + S ++ + + S
Sbjct: 186 SFHLFEQPEKIYTWWDYRMMAFRRNRGLRIDHILLSHETADSCATWQVDKAPRKLERPSD 245
Query: 111 HCPLTIEY 118
H P+ +E
Sbjct: 246 HAPVWVEL 253
>gi|160872135|ref|ZP_02062267.1| exodeoxyribonuclease III [Rickettsiella grylli]
gi|159120934|gb|EDP46272.1| exodeoxyribonuclease III [Rickettsiella grylli]
Length = 261
Score = 82.6 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-FWQK-----------------MDP 48
+ LK + ++ ++ GDFN D WQ +
Sbjct: 128 KQLKIYLQHELSLHPSLIVLGDFNIAPKDNDVHDPQIWQGKVLVSPQERKALQDIVALGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F E R + + D+ + + R K
Sbjct: 188 KDSFRLFHNEPHQYTWWDYRAGAFRRNHGLRIDHILSSTHLISQCIDCEIDKEIRRWEKP 247
Query: 109 STHCPLTIEYD 119
S H P+ Y
Sbjct: 248 SDHVPVIATYQ 258
>gi|162456399|ref|YP_001618766.1| exodeoxyribonuclease III [Sorangium cellulosum 'So ce 56']
gi|161166981|emb|CAN98286.1| exodeoxyribonuclease III [Sorangium cellulosum 'So ce 56']
Length = 269
Score = 82.6 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E L+ + + + +I GDFN +I + ++ GL
Sbjct: 127 ERLRSELEARYRPDQQIMICGDFNVAPEAIDVAEPKKWEGQVLFHPDERAALGRLMEWGL 186
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ F KE+ R + + D + +
Sbjct: 187 VDAFRACHPAKEAYSWWDYRMGAFRRNKGLRIDLALVTRPLAARCTDVSIDTRPRELQRP 246
Query: 109 STHCPLTIEY 118
S H P+ +E
Sbjct: 247 SDHAPVVVEI 256
>gi|53724173|ref|YP_103357.1| exodeoxyribonuclease III [Burkholderia mallei ATCC 23344]
gi|121601562|ref|YP_993558.1| exodeoxyribonuclease III [Burkholderia mallei SAVP1]
gi|124384052|ref|YP_001029013.1| exodeoxyribonuclease III [Burkholderia mallei NCTC 10229]
gi|126440535|ref|YP_001059656.1| exodeoxyribonuclease III [Burkholderia pseudomallei 668]
gi|126449755|ref|YP_001081066.1| exodeoxyribonuclease III [Burkholderia mallei NCTC 10247]
gi|126452052|ref|YP_001066939.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1106a]
gi|134277971|ref|ZP_01764686.1| exodeoxyribonuclease III [Burkholderia pseudomallei 305]
gi|167003440|ref|ZP_02269226.1| exodeoxyribonuclease III [Burkholderia mallei PRL-20]
gi|167720390|ref|ZP_02403626.1| exodeoxyribonuclease III [Burkholderia pseudomallei DM98]
gi|167739381|ref|ZP_02412155.1| exodeoxyribonuclease III [Burkholderia pseudomallei 14]
gi|167816592|ref|ZP_02448272.1| exodeoxyribonuclease III [Burkholderia pseudomallei 91]
gi|167846507|ref|ZP_02472015.1| exodeoxyribonuclease III [Burkholderia pseudomallei B7210]
gi|167895086|ref|ZP_02482488.1| exodeoxyribonuclease III [Burkholderia pseudomallei 7894]
gi|167903470|ref|ZP_02490675.1| exodeoxyribonuclease III [Burkholderia pseudomallei NCTC 13177]
gi|167911721|ref|ZP_02498812.1| exodeoxyribonuclease III [Burkholderia pseudomallei 112]
gi|167919720|ref|ZP_02506811.1| exodeoxyribonuclease III [Burkholderia pseudomallei BCC215]
gi|217421040|ref|ZP_03452545.1| exodeoxyribonuclease III [Burkholderia pseudomallei 576]
gi|237813050|ref|YP_002897501.1| exodeoxyribonuclease III [Burkholderia pseudomallei MSHR346]
gi|242317870|ref|ZP_04816886.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1106b]
gi|254178518|ref|ZP_04885173.1| exodeoxyribonuclease III [Burkholderia mallei ATCC 10399]
gi|254184341|ref|ZP_04890931.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1655]
gi|254191371|ref|ZP_04897875.1| exodeoxyribonuclease III [Burkholderia pseudomallei Pasteur 52237]
gi|254195861|ref|ZP_04902287.1| exodeoxyribonuclease III [Burkholderia pseudomallei S13]
gi|254261312|ref|ZP_04952366.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1710a]
gi|254297001|ref|ZP_04964454.1| exodeoxyribonuclease III [Burkholderia pseudomallei 406e]
gi|254357938|ref|ZP_04974211.1| exodeoxyribonuclease III [Burkholderia mallei 2002721280]
gi|52427596|gb|AAU48189.1| exodeoxyribonuclease III [Burkholderia mallei ATCC 23344]
gi|121230372|gb|ABM52890.1| exodeoxyribonuclease III [Burkholderia mallei SAVP1]
gi|124292072|gb|ABN01341.1| exodeoxyribonuclease III [Burkholderia mallei NCTC 10229]
gi|126220028|gb|ABN83534.1| exodeoxyribonuclease III [Burkholderia pseudomallei 668]
gi|126225694|gb|ABN89234.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1106a]
gi|126242625|gb|ABO05718.1| exodeoxyribonuclease III [Burkholderia mallei NCTC 10247]
gi|134251621|gb|EBA51700.1| exodeoxyribonuclease III [Burkholderia pseudomallei 305]
gi|148027065|gb|EDK85086.1| exodeoxyribonuclease III [Burkholderia mallei 2002721280]
gi|157807529|gb|EDO84699.1| exodeoxyribonuclease III [Burkholderia pseudomallei 406e]
gi|157939043|gb|EDO94713.1| exodeoxyribonuclease III [Burkholderia pseudomallei Pasteur 52237]
gi|160699557|gb|EDP89527.1| exodeoxyribonuclease III [Burkholderia mallei ATCC 10399]
gi|169652606|gb|EDS85299.1| exodeoxyribonuclease III [Burkholderia pseudomallei S13]
gi|184214872|gb|EDU11915.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1655]
gi|217396452|gb|EEC36469.1| exodeoxyribonuclease III [Burkholderia pseudomallei 576]
gi|237503790|gb|ACQ96108.1| exodeoxyribonuclease III [Burkholderia pseudomallei MSHR346]
gi|242141109|gb|EES27511.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1106b]
gi|243061042|gb|EES43228.1| exodeoxyribonuclease III [Burkholderia mallei PRL-20]
gi|254220001|gb|EET09385.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1710a]
Length = 258
Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W +++ + GD+N D +
Sbjct: 128 DALQAWLKDELQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAQLVALGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S + +
Sbjct: 188 VDAFRRFEQPEKTFTWWDYRMLAFRRNAGLRIDHILLSPALAETCTSCTVDRVPRTWEQP 247
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 248 SDHTPVVAQL 257
>gi|56751512|ref|YP_172213.1| exodeoxyribonuclease III [Synechococcus elongatus PCC 6301]
gi|81301416|ref|YP_401624.1| exodeoxyribonuclease III [Synechococcus elongatus PCC 7942]
gi|56686471|dbj|BAD79693.1| exodeoxyribonuclease III [Synechococcus elongatus PCC 6301]
gi|81170297|gb|ABB58637.1| Exodeoxyribonuclease III [Synechococcus elongatus PCC 7942]
Length = 265
Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 29/129 (22%), Gaps = 19/129 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPD 49
L+++ I GDFN + D ++ +
Sbjct: 134 LQQYLTVLGDRESQIHICGDFNIALEDRDIYDPAGKETHIMSSPTEREALRQSVLSLGFV 193
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F + R + D+ ++ K S
Sbjct: 194 DAFRLFEAGADQFSWWDYRTGAFRRNRGWRIDHHYLSESAKARAIACHIDREPRTWEKPS 253
Query: 110 THCPLTIEY 118
H P+ +E
Sbjct: 254 DHTPVVLEL 262
>gi|146340991|ref|YP_001206039.1| exodeoxyribonuclease III [Bradyrhizobium sp. ORS278]
gi|146193797|emb|CAL77814.1| exodeoxyribonuclease III [Bradyrhizobium sp. ORS278]
Length = 263
Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 39/134 (29%), Gaps = 18/134 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGL 51
L+ +A +++KT P ++AGDFN + ++ F +
Sbjct: 130 RLRDYARERLKTEEPLILAGDFNVIPAAADVSNPEAWVEDALFRPETRESFQSLLGLGLT 189
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQSDLDTRRSKLS 109
++ + L+ S +V K S
Sbjct: 190 DALRAVNDAPGQYTFWDYQAGAWQKNAGIRIDHLLLSPQASDRLVEVGIDSYVRAWEKPS 249
Query: 110 THCPLTIEYDFEKG 123
H P+ ++D E
Sbjct: 250 DHVPVWADFDLETA 263
>gi|254498807|ref|ZP_05111518.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
gi|254351971|gb|EET10795.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
Length = 265
Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 34/132 (25%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ + + Q++ + GDFN D ++
Sbjct: 132 QKVTAFIQQQMSIYPKVAVVGDFNIAPEDRDVHDPLEWQDSVLVSPPEREAFAALLQLGL 191
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q ++S R + D+ + + + +
Sbjct: 192 YDSFRNFVQAEQSFSWWDYRAAGFRRNRGLRIDHVLLSQELNVLCRQSCIDVEPRKTERP 251
Query: 109 STHCPLTIEYDF 120
S H P+ +E +
Sbjct: 252 SDHAPVWVELEL 263
>gi|170703657|ref|ZP_02894392.1| exodeoxyribonuclease III Xth [Burkholderia ambifaria IOP40-10]
gi|170131435|gb|EDT00028.1| exodeoxyribonuclease III Xth [Burkholderia ambifaria IOP40-10]
Length = 271
Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 34/128 (26%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L W +++ + GD+N D ++
Sbjct: 141 DALHAWLSAEMQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAKLLELGF 200
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q +++ R + + D+ + + S + L +
Sbjct: 201 VDAFRCFEQPEKTFTWWDYRMLAFRRNAGLRIDHILLSPALAANCTSCEVDRLPRTWEQP 260
Query: 109 STHCPLTI 116
S H P+
Sbjct: 261 SDHTPVVA 268
>gi|148360698|ref|YP_001251905.1| hypothetical protein LPC_2645 [Legionella pneumophila str. Corby]
gi|296106237|ref|YP_003617937.1| exodeoxyribonuclease III [Legionella pneumophila 2300/99 Alcoy]
gi|148282471|gb|ABQ56559.1| hypothetical protein LPC_2645 [Legionella pneumophila str. Corby]
gi|158512142|gb|ABW69103.1| exodeoxyribonuclease III [Legionella pneumophila]
gi|295648138|gb|ADG23985.1| exodeoxyribonuclease III [Legionella pneumophila 2300/99 Alcoy]
Length = 256
Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 21/135 (15%)
Query: 7 EWLK---KWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQK 45
+WLK ++ ++ + GDFN D +
Sbjct: 122 DWLKKVTRFIQHQLSIYSKVAVVGDFNIAPEDRDVHDPVEWEGCVLVSPAERQAFMEILE 181
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ F QE+++ R + + D+ + + +
Sbjct: 182 LGLHDSFRNFAQEEKAFSWWDYRAAAFRRNRGLRIDHVLLSHELNALCRQSKIDKEPRKA 241
Query: 106 SKLSTHCPLTIEYDF 120
+ S H P+ +E +
Sbjct: 242 ERPSDHAPVWVELEL 256
>gi|153876175|ref|ZP_02003628.1| Endonuclease/exonuclease/phosphatase [Beggiatoa sp. PS]
gi|152067361|gb|EDN66372.1| Endonuclease/exonuclease/phosphatase [Beggiatoa sp. PS]
Length = 253
Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 29/130 (22%), Gaps = 20/130 (15%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L+ + +K ++ GDFN D +
Sbjct: 126 QLQNYICDNLKQYPRLIVLGDFNIAPEDQDVYDPIAWAGKILVSPPERTALQNLLHLGLK 185
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q S R + L I L + R + S
Sbjct: 186 DTFRLFEQPVASFSWWDYRRGAFLRNHGI--RIDLILASTALHCTGCTIDTAPRRLERPS 243
Query: 110 THCPLTIEYD 119
H P+ +
Sbjct: 244 DHAPVVATFQ 253
>gi|189350943|ref|YP_001946571.1| exodeoxyribonuclease III [Burkholderia multivorans ATCC 17616]
gi|189334965|dbj|BAG44035.1| exodeoxyribonuclease III [Burkholderia multivorans ATCC 17616]
Length = 258
Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L W +++ + GD+N D ++
Sbjct: 128 DALHAWLRTEMQRYPKLALLGDYNIAPEDRDVHDPAKWEGENLVSPQERAHFAKLIELGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + S S + + +
Sbjct: 188 VDAFRRFEQPEKTFTWWDYRMFAFRRNAGLRIDHILLSPALAGSCTSCEVDRVPRTWEQP 247
Query: 109 STHCPLTI 116
S H P+
Sbjct: 248 SDHTPVVA 255
>gi|78185266|ref|YP_377701.1| exodeoxyribonuclease III xth [Synechococcus sp. CC9902]
gi|78169560|gb|ABB26657.1| Exodeoxyribonuclease III [Synechococcus sp. CC9902]
Length = 282
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 18/134 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
LK++ +Q ++ G P + GDFN + + D +
Sbjct: 135 LKRYLEQPLQRGEPLCVVGDFNIALEARDMHDPDRLSGGIMASDPEREALQMALESGLQD 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ F + R + D+ + S K S
Sbjct: 195 VFRVFEPDGGHWSWWDYRTGAWDRDRGWRIDHIYLCDELLGLARSCVIHKQVRGNEKPSD 254
Query: 111 HCPLTIEYDFEKGN 124
H P++++ D+ +
Sbjct: 255 HAPVSVDLDWPPSD 268
>gi|54293632|ref|YP_126047.1| hypothetical protein lpl0685 [Legionella pneumophila str. Lens]
gi|53753464|emb|CAH14919.1| hypothetical protein lpl0685 [Legionella pneumophila str. Lens]
Length = 256
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 21/135 (15%)
Query: 7 EWLK---KWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQK 45
+WL ++ +I + GDFN D +
Sbjct: 122 DWLNKVTRFIQHEISIYSKVAVVGDFNIAPEDRDVHDPVEWEGCVLVSPPERQAFMKILE 181
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ F QE+++ R + + D+ + + +
Sbjct: 182 LGLHDSFRNFAQEEKAFSWWDYRAAAFRRNRGLRIDHVLLSHELNALCRQSKIDKEPRKA 241
Query: 106 SKLSTHCPLTIEYDF 120
+ S H P+ +E +
Sbjct: 242 ERPSDHAPVWVELEL 256
>gi|254447579|ref|ZP_05061045.1| exodeoxyribonuclease III [gamma proteobacterium HTCC5015]
gi|198262922|gb|EDY87201.1| exodeoxyribonuclease III [gamma proteobacterium HTCC5015]
Length = 261
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 32/134 (23%), Gaps = 21/134 (15%)
Query: 8 WLK---KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKM 46
WLK + +Q+ + ++ GDFN D +
Sbjct: 125 WLKKVGDYIEQQSQQYEKLIVLGDFNIAPEDEDVYDPIAWSEKILCSTPERDALKRIKDN 184
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
Q+ R K + + D +
Sbjct: 185 GLKDCFRMLNQDSGEYSWWDFRTKGFENGRGLRIDLILASEALQKVLKGCWIDRQPRAGE 244
Query: 107 KLSTHCPLTIEYDF 120
K S H P+ E+ +
Sbjct: 245 KPSDHAPVVAEFTY 258
>gi|52840886|ref|YP_094685.1| hypothetical protein lpg0649 [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52627997|gb|AAU26738.1| exodeoxyribonuclease III [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
Length = 263
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 21/135 (15%)
Query: 7 EWLK---KWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQK 45
+WL ++ +I + GDFN D +
Sbjct: 129 DWLNKVTRFIQHEISIYSKVAVVGDFNIAPEDRDVYDPVEWEGCVLVSPPERQAFMKILE 188
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ F QE+++ R + + D+ + + +
Sbjct: 189 LGLHDSFRNFAQEEKAFSWWDYRAAAFRRNRGLRIDHVLLSHELNALCRQSKIDKEPRKA 248
Query: 106 SKLSTHCPLTIEYDF 120
+ S H P+ +E +
Sbjct: 249 ERPSDHAPVWVELEL 263
>gi|71898520|ref|ZP_00680691.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Xylella
fastidiosa Ann-1]
gi|182681462|ref|YP_001829622.1| exodeoxyribonuclease III Xth [Xylella fastidiosa M23]
gi|71731644|gb|EAO33704.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Xylella
fastidiosa Ann-1]
gi|182631572|gb|ACB92348.1| exodeoxyribonuclease III Xth [Xylella fastidiosa M23]
gi|307579913|gb|ADN63882.1| exodeoxyribonuclease III Xth [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 264
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 19/133 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
+ + W ++++ V+ GDFN ++ D +
Sbjct: 126 DAVYHWLAEELQRYPRLVVLGDFNIAPDARDVYDPQVWNEDHILTSTTERAALDKLLGLG 185
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
Q+ R S + D V+ + +
Sbjct: 186 LHDGFRLHHQDAGIFSWWDYRQASFRRNRGLRIDLTLVSEALRAQAVASGIDRVPRGWER 245
Query: 108 LSTHCPLTIEYDF 120
S H P IE
Sbjct: 246 PSDHAPAWIELAL 258
>gi|166363474|ref|YP_001655747.1| exodeoxyribonuclease III [Microcystis aeruginosa NIES-843]
gi|166085847|dbj|BAG00555.1| exodeoxyribonuclease III [Microcystis aeruginosa NIES-843]
Length = 266
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 38/135 (28%), Gaps = 19/135 (14%)
Query: 7 EWLKKWADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQK------------------MD 47
E L+K+ D+ I + I GDFN + D ++ +
Sbjct: 132 ETLRKYLDKIINSQPEELCICGDFNIALEDKDIYDPKGKENHIMSSAKEREALEKVLEIG 191
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+F R+ D+ V+ ++ K
Sbjct: 192 LQDAFRKFTSAAGHYSWWDYRSGGFARNRGWRIDHLYLTPQLYEKAVNCLIDREPRKQEK 251
Query: 108 LSTHCPLTIEYDFEK 122
S H P+ +E +K
Sbjct: 252 PSDHTPVILEISSQK 266
>gi|91977274|ref|YP_569933.1| exodeoxyribonuclease III [Rhodopseudomonas palustris BisB5]
gi|91683730|gb|ABE40032.1| Exodeoxyribonuclease III [Rhodopseudomonas palustris BisB5]
Length = 263
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 38/134 (28%), Gaps = 18/134 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGL 51
L +++ +++KT P ++AGDFN + + F +
Sbjct: 130 RLLQYSKERLKTEEPLILAGDFNVIPQASDVYNPAGWVDDALFRPQTRESFQALLGLGLT 189
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLS 109
++ + L+ +V K S
Sbjct: 190 DALRATTDAPGQYTFWDYQAGAWQKNWGIRIDHLLLSPQATDRLVGVGIDSHVRSWEKPS 249
Query: 110 THCPLTIEYDFEKG 123
H P+ ++DFE
Sbjct: 250 DHVPVWADFDFETA 263
>gi|83718841|ref|YP_442378.1| exodeoxyribonuclease III [Burkholderia thailandensis E264]
gi|167619376|ref|ZP_02388007.1| exodeoxyribonuclease III [Burkholderia thailandensis Bt4]
gi|257138580|ref|ZP_05586842.1| exodeoxyribonuclease III [Burkholderia thailandensis E264]
gi|83652666|gb|ABC36729.1| exodeoxyribonuclease III [Burkholderia thailandensis E264]
Length = 258
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W +++ + GD+N D +
Sbjct: 128 DALQAWLKNELQRYPKLALLGDYNIAPEDRDVHDPSKWEGQNLVSPQERAHFAQLVALGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S +
Sbjct: 188 VDAFRRFDQPEKTFTWWDYRMLAFRRNAGLRIDHILLSPALAETCTSCTVDRAPRAWEQP 247
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 248 SDHTPVVAQL 257
>gi|307609446|emb|CBW98940.1| hypothetical protein LPW_07251 [Legionella pneumophila 130b]
Length = 256
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 21/135 (15%)
Query: 7 EWLK---KWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQK 45
+WL ++ +I + GDFN + D +
Sbjct: 122 DWLNKVTRFIQHEISIYSKVAVVGDFNIAPDDRDVHDPVEWEGCVLVSPPERQAFMKILE 181
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ F QE+++ R + + D+ + + +
Sbjct: 182 LGLHDSFRNFAQEEKAFSWWDYRAAAFRRNRGLRIDHVLLSHELNALCRQSKIDKEPRKA 241
Query: 106 SKLSTHCPLTIEYDF 120
+ S H P+ +E +
Sbjct: 242 ERPSDHAPVWVELEL 256
>gi|167586711|ref|ZP_02379099.1| Exodeoxyribonuclease III xth [Burkholderia ubonensis Bu]
Length = 258
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 33/128 (25%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L W +++ + GD+N D ++
Sbjct: 128 DALNAWLRSELQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAGLLELGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S +
Sbjct: 188 VDAFRRFEQPEKTFTWWDYRMMAFRRNAGLRIDHILLSPALAETCTSCVVDRTPRTWEQP 247
Query: 109 STHCPLTI 116
S H P+
Sbjct: 248 SDHTPVVA 255
>gi|94971952|ref|YP_593992.1| exodeoxyribonuclease III (xth) [Deinococcus geothermalis DSM 11300]
gi|94554003|gb|ABF43918.1| exodeoxyribonuclease III (xth) [Deinococcus geothermalis DSM 11300]
Length = 254
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 11/130 (8%), Positives = 30/130 (23%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDP--- 48
+ W ++ + GDFN + ++ +
Sbjct: 121 DAAHAWLRDELAAHERLAVLGDFNVAPEDRDVHNPKRWAGQVLVSGPEREAFRGLLDVGF 180
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F + + + + + D+ + + +
Sbjct: 181 QDAFRLFEEPPGALSWWNYGALAFPRNWGLRIDHVLVSPALAQVCQACWVDREPRAHERP 240
Query: 109 STHCPLTIEY 118
S H P+ E+
Sbjct: 241 SDHAPVVAEF 250
>gi|298493134|ref|YP_003723311.1| exodeoxyribonuclease III ['Nostoc azollae' 0708]
gi|298235052|gb|ADI66188.1| exodeoxyribonuclease III ['Nostoc azollae' 0708]
Length = 260
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 34/128 (26%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDG 50
L+K+ + + + GDFN + I D + +
Sbjct: 133 LRKYLQVLLLSDPAISMCGDFNIALEDIDIHDKVKIEDHIMASERERQALRDILSLGFAD 192
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+F E + R + D+ S + + S
Sbjct: 193 AFRKFNNEGGNYSWWDYRTAAFRRNLGWRIDHHYVTPVLCARAQSCIIDVAPRKLEQPSD 252
Query: 111 HCPLTIEY 118
H P+ +E+
Sbjct: 253 HTPVVVEF 260
>gi|238028045|ref|YP_002912276.1| exodeoxyribonuclease III xth [Burkholderia glumae BGR1]
gi|237877239|gb|ACR29572.1| Exodeoxyribonuclease III xth [Burkholderia glumae BGR1]
Length = 258
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 33/128 (25%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W ++ + GD+N D M
Sbjct: 128 DALQAWLKDELARHPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAALLGMGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + D+ + ++ + + +
Sbjct: 188 VDAFRRFEQPEKTFTWWDYRMLGFRRNAGLRIDHILLSPALATTLRACEVDREPRGWEQP 247
Query: 109 STHCPLTI 116
S H P+
Sbjct: 248 SDHAPIFA 255
>gi|148242745|ref|YP_001227902.1| exodeoxyribonuclease III [Synechococcus sp. RCC307]
gi|147851055|emb|CAK28549.1| Exodeoxyribonuclease III [Synechococcus sp. RCC307]
Length = 275
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLL 52
L+++ D + + G PF + GDFN + + + D
Sbjct: 135 LRRYLDVQREQGEPFCMLGDFNIGPEARDLHNPERSTGGIMASDAEREALKACLGDDLRD 194
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLST 110
E+ S +S + +D ++ + + K S
Sbjct: 195 AFRMFEQGSGHWSWWDYRSGAWNGDRGWRIDHLYLDEELQQRALACEIHKSERGLEKPSD 254
Query: 111 HCPLTIEY 118
H P++++
Sbjct: 255 HAPVSVDL 262
>gi|115352233|ref|YP_774072.1| exodeoxyribonuclease III Xth [Burkholderia ambifaria AMMD]
gi|115282221|gb|ABI87738.1| Exodeoxyribonuclease III [Burkholderia ambifaria AMMD]
Length = 271
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L W +++ + GD+N D ++
Sbjct: 141 DALHAWLSAEMQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAKLLELGF 200
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S + L +
Sbjct: 201 VDAFRRFEQPEKTFTWWDYRMLAFRRNAGLRIDHILLSPALAANCTSCEVDRLPRTWEQP 260
Query: 109 STHCPLTI 116
S H P+
Sbjct: 261 SDHTPVVA 268
>gi|28198769|ref|NP_779083.1| exodeoxyribonuclease III [Xylella fastidiosa Temecula1]
gi|28056860|gb|AAO28732.1| exodeoxyribonuclease III [Xylella fastidiosa Temecula1]
Length = 262
Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 19/133 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
+ + W ++++ V+ GDFN ++ D +
Sbjct: 124 DAVYHWLAEELQRYPRLVVLGDFNIAPDARDVYDPQVWNEDHILTSTTERAALDKLLGLG 183
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
Q+ R S + D V+ + +
Sbjct: 184 LHDGFRLHHQDAGIFSWWDYRQASFRRNRGLRIDLTLVSEALRAQAVASGIDRVPRGWER 243
Query: 108 LSTHCPLTIEYDF 120
S H P IE
Sbjct: 244 PSDHAPAWIELAL 256
>gi|319788428|ref|YP_004147903.1| exodeoxyribonuclease III [Pseudoxanthomonas suwonensis 11-1]
gi|317466940|gb|ADV28672.1| exodeoxyribonuclease III [Pseudoxanthomonas suwonensis 11-1]
Length = 256
Score = 81.4 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 30/130 (23%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDP 48
++ W +Q+ + V+ GDFN + D +
Sbjct: 125 AVRTWLEQEAREHPRLVVLGDFNIAPDERDVHDPAVWNETHILTSAAERAALRDLLALGL 184
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
E R + + D +V+ +
Sbjct: 185 HDGYRLLHDEGGVFSWWDYRMAAFRRNLGLRIDLTLVSEALRGQVVAAGIDREPRTWERP 244
Query: 109 STHCPLTIEY 118
S H P IE
Sbjct: 245 SDHAPAWIEL 254
>gi|171318534|ref|ZP_02907685.1| exodeoxyribonuclease III Xth [Burkholderia ambifaria MEX-5]
gi|171096276|gb|EDT41183.1| exodeoxyribonuclease III Xth [Burkholderia ambifaria MEX-5]
Length = 271
Score = 81.4 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L W +++ + GD+N D ++
Sbjct: 141 DALHAWLSAEMQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAKLLELGF 200
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S + L +
Sbjct: 201 VDAFRRFEQPEKTFTWWDYRMLAFRRNAGLRIDHILLSPALAANCTSCEVDRLPRTWEQP 260
Query: 109 STHCPLTI 116
S H P+
Sbjct: 261 SDHTPVVA 268
>gi|325527267|gb|EGD04639.1| exodeoxyribonuclease III [Burkholderia sp. TJI49]
Length = 258
Score = 81.4 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 34/128 (26%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W +++ + GD+N D ++
Sbjct: 128 DALQAWLRAEMQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAQLIELGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S +
Sbjct: 188 VDAFRRFEQPEKTFTWWDYRMFAFRRNAGLRIDHILLSPALADTCTSCVVDRTPRTWEQP 247
Query: 109 STHCPLTI 116
S H P+
Sbjct: 248 SDHTPVVA 255
>gi|121611360|ref|YP_999167.1| exodeoxyribonuclease III Xth [Verminephrobacter eiseniae EF01-2]
gi|121556000|gb|ABM60149.1| exodeoxyribonuclease III Xth [Verminephrobacter eiseniae EF01-2]
Length = 258
Score = 81.4 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 18/129 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
+ L+ ++ V+AGDFN D +
Sbjct: 128 QALQDMVRAELAAHPRLVLAGDFNVAPQDRDSYDPEGLRETIHHTSAERAHFQALLALGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q +S R + D+ ++ + + +
Sbjct: 188 ADAFRMFEQPGKSYSWWDYRMLGFQKNRGLRIDHILVSAALRPAVSACMIDRAPRKNPQP 247
Query: 109 STHCPLTIE 117
S H P+ +
Sbjct: 248 SDHAPVVLT 256
>gi|253997905|ref|YP_003049968.1| exodeoxyribonuclease III Xth [Methylovorus sp. SIP3-4]
gi|253984584|gb|ACT49441.1| exodeoxyribonuclease III Xth [Methylovorus sp. SIP3-4]
Length = 255
Score = 81.4 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 18/129 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPDG 50
L ++ + GD+N D +
Sbjct: 126 LTTHLQAELAAHPKLALLGDYNIAPEDRDVHDPAAWLGQVLVSEPERTAFQGLVGLGLHD 185
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q + S R + D+ + + + + S
Sbjct: 186 TFRLFEQPEASFSWWDYRMAGFRRNLGLRIDHILVSTPLLAACKASWIDKAPRKLERPSD 245
Query: 111 HCPLTIEYD 119
H P+ +E
Sbjct: 246 HTPVVLELS 254
>gi|172061100|ref|YP_001808752.1| exodeoxyribonuclease III Xth [Burkholderia ambifaria MC40-6]
gi|171993617|gb|ACB64536.1| exodeoxyribonuclease III Xth [Burkholderia ambifaria MC40-6]
Length = 271
Score = 81.4 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L W +++ + GD+N D ++
Sbjct: 141 DALHAWLSAEMQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAKLLELGF 200
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S + L +
Sbjct: 201 VDAFRRFEQPEKTFTWWDYRMLAFRRNAGLRIDHILLSPALAANCTSCEVDRLPRTWEQP 260
Query: 109 STHCPLTI 116
S H P+
Sbjct: 261 SDHTPVVA 268
>gi|145594280|ref|YP_001158577.1| exodeoxyribonuclease III Xth [Salinispora tropica CNB-440]
gi|145303617|gb|ABP54199.1| Exodeoxyribonuclease III [Salinispora tropica CNB-440]
Length = 265
Score = 81.4 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L+ + ++ G P + GDFN D + + D
Sbjct: 128 ALRDTLEVELTGGAPLAVCGDFNVAPTDSDVWDPALFTGSTHVTPAERTALAALRDLGLD 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ + R + D + + + + S
Sbjct: 188 DVVPTPMKGPHPFTYWDYRAGMFHQNKGMRIDLVYASAPFARVVRAAYVDREARKGKGPS 247
Query: 110 THCPLTIEYDF 120
H P+ ++ D
Sbjct: 248 DHAPIVVDADL 258
>gi|300115398|ref|YP_003761973.1| exodeoxyribonuclease III [Nitrosococcus watsonii C-113]
gi|299541335|gb|ADJ29652.1| exodeoxyribonuclease III [Nitrosococcus watsonii C-113]
Length = 254
Score = 81.0 bits (198), Expect = 4e-14, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 30/129 (23%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPD 49
+K + + + ++ GDFN D +
Sbjct: 125 RIKDYLQEALVEYPKLIVLGDFNVAPADQDVYDPEVWHETILCSTPEREALQEILALGFQ 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F Q+ +S R + + D + R + S
Sbjct: 185 DSFRLFEQQAQSFSWWDYRGGAFHRNRGLRIDLILISKALVSKCMGCVIDKEPRRLPRPS 244
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 245 DHAPVIATF 253
>gi|251773491|gb|EES54039.1| Exodeoxyribonuclease III [Leptospirillum ferrodiazotrophum]
Length = 259
Score = 81.0 bits (198), Expect = 4e-14, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ L D + + V+ GDFN D +
Sbjct: 124 DRLAALLDDERRRHPFLVLTGDFNIVPEDRDAYDPVALRGQIFLSPPEREALARIMNLGF 183
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ R + D ++ S + + +
Sbjct: 184 RDAFRALHPDPGHFSWWDYRQGMFRRNMGLRIDLILMASSLEPALTSAEIDREVRKNERP 243
Query: 109 STHCPLTIEYD 119
S H P+ +++D
Sbjct: 244 SDHAPVFVDFD 254
>gi|37519709|ref|NP_923086.1| exodeoxyribonuclease III [Gloeobacter violaceus PCC 7421]
gi|35210700|dbj|BAC88081.1| exodeoxyribonuclease III [Gloeobacter violaceus PCC 7421]
Length = 258
Score = 81.0 bits (198), Expect = 4e-14, Method: Composition-based stats.
Identities = 12/131 (9%), Positives = 26/131 (19%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
E L+++ ++ GDFN D +
Sbjct: 128 ERLRQYLLADFDPKAAVLLCGDFNIAPEERDVWDPKAVAGKVLFHPDEHAALERIRTWGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
R + + D+ + + +
Sbjct: 188 IDAFRLHSPAAGQFSWWDYRAAAFRRNLGMRIDHIWVSSPLAERCSACWIDAQPRAQPSP 247
Query: 109 STHCPLTIEYD 119
S H P+ +
Sbjct: 248 SDHVPVAASFR 258
>gi|218245849|ref|YP_002371220.1| exodeoxyribonuclease III [Cyanothece sp. PCC 8801]
gi|257058897|ref|YP_003136785.1| exodeoxyribonuclease III [Cyanothece sp. PCC 8802]
gi|218166327|gb|ACK65064.1| exodeoxyribonuclease III [Cyanothece sp. PCC 8801]
gi|256589063|gb|ACU99949.1| exodeoxyribonuclease III [Cyanothece sp. PCC 8802]
Length = 262
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 37/131 (28%), Gaps = 19/131 (14%)
Query: 7 EWLKKWADQKIKTGIP-FVIAGDFNRKINSIGDTDDFWQK------------------MD 47
+ LK++ Q ++ I GDFN + + ++ +
Sbjct: 132 KVLKQYLTQFLEKSKQELCICGDFNIALEDKDIYNSKSKEDHIMSSPLERESLKDILDLG 191
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+F E R+ D+ +S + ++
Sbjct: 192 LKDAFRKFTSEGGQFSWWDYRSGGFQRNRGWRIDHHYLTPKLYEKAISCTIDIEPRKLTQ 251
Query: 108 LSTHCPLTIEY 118
S H P+ +E+
Sbjct: 252 PSDHAPVIVEF 262
>gi|313199970|ref|YP_004038628.1| exodeoxyribonuclease III xth [Methylovorus sp. MP688]
gi|312439286|gb|ADQ83392.1| exodeoxyribonuclease III Xth [Methylovorus sp. MP688]
Length = 255
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 18/129 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPDG 50
L ++ + GD+N D +
Sbjct: 126 LTTHLQAELAAHPKLALLGDYNIAPEDRDVHDPAAWLGQVLVSEPERNAFQGLVGLGLHD 185
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q + S R + D+ + + + + S
Sbjct: 186 TFRLFEQPEASFSWWDYRMAGFRRNLGLRIDHILVSTPLLAACKASWIDKAPRKLERPSD 245
Query: 111 HCPLTIEYD 119
H P+ +E
Sbjct: 246 HTPVVLELS 254
>gi|224823708|ref|ZP_03696817.1| exodeoxyribonuclease III Xth [Lutiella nitroferrum 2002]
gi|224604163|gb|EEG10337.1| exodeoxyribonuclease III Xth [Lutiella nitroferrum 2002]
Length = 257
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 12/128 (9%), Positives = 30/128 (23%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
L+++ ++ + GD+N + D +
Sbjct: 128 LERYVADELTRHPSLALLGDYNIAPDDRDVYDPDAWKDKVLCSVPERDAFRRLIGLGLSD 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q+++ R + D+ + + S
Sbjct: 188 SFRLFNQDEKQYSWWDYRAMMFRRNLGLRIDHILISDALKARATECVIDKAPRKWERPSD 247
Query: 111 HCPLTIEY 118
H P+ +
Sbjct: 248 HTPVVLTL 255
>gi|220933200|ref|YP_002512099.1| exodeoxyribonuclease III [Thioalkalivibrio sp. HL-EbGR7]
gi|219994510|gb|ACL71112.1| exodeoxyribonuclease III [Thioalkalivibrio sp. HL-EbGR7]
Length = 255
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 32/125 (25%), Gaps = 18/125 (14%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPDGLLI 53
+ ++K V+ GDFN D +
Sbjct: 129 FIAGEMKRHEKLVVLGDFNIAPEDRDVHDPEAWHEKILCSTPEREALKKILDLGLSDCFR 188
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
RF Q ++S R + D + + + R + S H P
Sbjct: 189 RFEQPEQSFSWWDYRAAGFRRNLGLRIDLILSSPALTETCTACIIDVEPRRLERPSDHAP 248
Query: 114 LTIEY 118
+ E+
Sbjct: 249 VVAEF 253
>gi|159029855|emb|CAO90909.1| xthA [Microcystis aeruginosa PCC 7806]
Length = 262
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 19/131 (14%)
Query: 7 EWLKKWADQKIKTGIP-FVIAGDFNRKINSIGDTDDFWQK------------------MD 47
E L+K+ D+ I + I GDFN + D ++ +
Sbjct: 132 ETLRKYLDKIINSQPQELCICGDFNIALEDKDIYDPKGKENHIMSSAKEREALEKVLEIG 191
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+F R+ D+ V+ ++ K
Sbjct: 192 LQDAFRKFTSAAGHYSWWDYRSGGFARNRGWRIDHLYLTPQLYEKAVNCLIDREPRKQEK 251
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 252 PSDHTPVILEI 262
>gi|27379872|ref|NP_771401.1| exonuclease III [Bradyrhizobium japonicum USDA 110]
gi|27353025|dbj|BAC50026.1| exonuclease III [Bradyrhizobium japonicum USDA 110]
Length = 273
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 18/134 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L +++ +++KT P ++AGDFN ++ + +
Sbjct: 140 RLLEYSKERLKTEEPLILAGDFNVIPHARDVHNPAAWTEDALFKTETRESFQSLLGLGLT 199
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
L E + + + D+ S + + K S
Sbjct: 200 DALRAVTDEPGLYTFWDYQAGAWQKNHGLRIDHLLLSPQASDRLANVGIDSYVRAWEKPS 259
Query: 110 THCPLTIEYDFEKG 123
H P+ + D E
Sbjct: 260 DHVPVWADLDLEAA 273
>gi|159037346|ref|YP_001536599.1| exodeoxyribonuclease III Xth [Salinispora arenicola CNS-205]
gi|157916181|gb|ABV97608.1| exodeoxyribonuclease III Xth [Salinispora arenicola CNS-205]
Length = 265
Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L+ + ++ G P + GDFN D + +
Sbjct: 128 ALRDALEVELTGGPPLAVCGDFNVAPTDADVWDPALFTGSTHVTPAERVALSALRDLGLA 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ + R + D + ++ + + S
Sbjct: 188 DVVPTPMKGPHPFTYWDYRAGMFHQNKGMRIDLVYASAPFTRAVRAAYVDREARKGKGPS 247
Query: 110 THCPLTIEYDF 120
H P+ ++ D
Sbjct: 248 DHAPIVVDADL 258
>gi|186682991|ref|YP_001866187.1| exodeoxyribonuclease III [Nostoc punctiforme PCC 73102]
gi|186465443|gb|ACC81244.1| exodeoxyribonuclease III [Nostoc punctiforme PCC 73102]
Length = 260
Score = 81.0 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 32/129 (24%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPD 49
L ++ + + GDFN + + ++
Sbjct: 132 ALHEYLRVLALSEPAICVCGDFNIALEDKDIHEQVSTENHIMATETERQALREILQLGFA 191
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+F E + R + D+ S + ++ S
Sbjct: 192 DAFRKFTTEGGNYSWWDYRAAAFRRNLGWRIDHHYLTPVLYERATSCIIDAEPRKSTQPS 251
Query: 110 THCPLTIEY 118
H P+ +E+
Sbjct: 252 DHTPVIVEF 260
>gi|114778638|ref|ZP_01453454.1| exodeoxyribonuclease III xth [Mariprofundus ferrooxydans PV-1]
gi|114551103|gb|EAU53664.1| exodeoxyribonuclease III xth [Mariprofundus ferrooxydans PV-1]
Length = 252
Score = 80.6 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 20/131 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L + +++K V+ GDFN I D ++
Sbjct: 124 QALCDFLQEELKQHDRLVLLGDFNIAPADIDVHDPTRWQGKILCSEPEREFFSTLLQLGL 183
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ EKE R + + L+ ++ ++ + + +
Sbjct: 184 IDGVRSLHPEKEMFSWWDYRMSAYRR--GWGVRIDHLLVTHALALSAAGVAVKYRELDRP 241
Query: 109 STHCPLTIEYD 119
S H P+ IE++
Sbjct: 242 SDHAPVWIEFE 252
>gi|167570556|ref|ZP_02363430.1| exodeoxyribonuclease III [Burkholderia oklahomensis C6786]
Length = 258
Score = 80.6 bits (197), Expect = 6e-14, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W +++ + GD+N D +
Sbjct: 128 DALQAWLKDEMQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAQLLALGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S + +
Sbjct: 188 VDAFRRFDQPEKTFTWWDYRMLAFRRNAGLRIDHILLSPALADTCTSCTVDRVPRTWEQP 247
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 248 SDHTPVVAQI 257
>gi|307153787|ref|YP_003889171.1| exodeoxyribonuclease III [Cyanothece sp. PCC 7822]
gi|306984015|gb|ADN15896.1| exodeoxyribonuclease III [Cyanothece sp. PCC 7822]
Length = 264
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 33/132 (25%), Gaps = 21/132 (15%)
Query: 7 EWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQK------------------M 46
+ L+ + K P + GDFN + ++ +
Sbjct: 134 KMLRNYL-TLFKENYPQELCVCGDFNVAPEDKDIHNPKGKETHIMATPQERKALQEVLEI 192
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+F E R+ D+ S ++
Sbjct: 193 GLKDAFRKFTAEGGHYSWWDYRSGGFQRNRGWRIDHHFLTPKLYEQATSCTIDIEPRKQE 252
Query: 107 KLSTHCPLTIEY 118
K S H P+ +E+
Sbjct: 253 KPSDHTPVIVEF 264
>gi|296135895|ref|YP_003643137.1| exodeoxyribonuclease III Xth [Thiomonas intermedia K12]
gi|295796017|gb|ADG30807.1| exodeoxyribonuclease III Xth [Thiomonas intermedia K12]
Length = 253
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
+ L+ W +++ + GDFN D +
Sbjct: 124 DALQAWVATELQRHAKVALMGDFNIAPEDRDVFDPVAWAGQIHCTPEERGHFKALLGLGL 183
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q +S RN + + D+ S+ S + +
Sbjct: 184 IDAFRAFDQPPKSWSWWDYRNLAFRKNQGLRIDHILVSEGLRGSLQSCVIDKAPRKNERP 243
Query: 109 STHCPLTI 116
S H P+
Sbjct: 244 SDHAPVIA 251
>gi|310823161|ref|YP_003955519.1| exodeoxyribonuclease III [Stigmatella aurantiaca DW4/3-1]
gi|309396233|gb|ADO73692.1| Exodeoxyribonuclease III [Stigmatella aurantiaca DW4/3-1]
Length = 257
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 19/131 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L+++ + + P V+ GD+N I D
Sbjct: 126 RLRRYLEARHTPDQPLVLCGDWNVAPEPIDVYDPAVWEGQTLFTLKERDALQQVCAFGLA 185
Query: 50 GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ ++ R S + D+ +V + + + +
Sbjct: 186 DTFRKLHPGVEKKFSWWDYRGLSFPKNLGVRIDHIFATAPLVQRLVKAEIDREERKGKQP 245
Query: 109 STHCPLTIEYD 119
S H P+ E+
Sbjct: 246 SDHAPVWAEFR 256
>gi|67924378|ref|ZP_00517808.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Crocosphaera watsonii WH 8501]
gi|67853771|gb|EAM49100.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Crocosphaera watsonii WH 8501]
Length = 262
Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 36/131 (27%), Gaps = 19/131 (14%)
Query: 7 EWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MD 47
+ LK + D +K I GDFN ++ + ++ +
Sbjct: 132 QVLKAYLDDLILKEAREVCICGDFNIALDDKDIYNSKGKEKHIMSSPVERETLQNILTIG 191
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+F E R+ D+ ++ ++ K
Sbjct: 192 LKDAFRKFTTEGGHFSWWDYRSGGFQRNRGWRIDHLYLTHKLYEKAINCTIDIEPRKQEK 251
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 252 PSDHTPVILEI 262
>gi|167563395|ref|ZP_02356311.1| exodeoxyribonuclease III [Burkholderia oklahomensis EO147]
Length = 258
Score = 80.3 bits (196), Expect = 7e-14, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ W +++ + GD+N D +
Sbjct: 128 DALQAWLKDEMQRYPKLALLGDYNIAPEDRDVHDPAKWEGQNLVSPQERAHFAQLLALGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
RF Q +++ R + + D+ + + S + +
Sbjct: 188 VDAFRRFDQPEKTFTWWDYRMLAFRRNAGLRIDHILLSPALADTCTSCMVDRVPRTWEQP 247
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 248 SDHTPVVAQI 257
>gi|15838527|ref|NP_299215.1| exodeoxyribonuclease III [Xylella fastidiosa 9a5c]
gi|9107031|gb|AAF84735.1|AE004013_1 exodeoxyribonuclease III [Xylella fastidiosa 9a5c]
Length = 264
Score = 80.3 bits (196), Expect = 8e-14, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 19/133 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
+ + W ++++ V+ GDFN ++ D +
Sbjct: 126 DAVYHWLAEELQRYPRLVVLGDFNIAPDARDVYDPQVWNEDHILTSTTERVALGKLLGLG 185
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
Q+ R S + D +V+ + +
Sbjct: 186 LHDGFRLHHQDTGIFSWWDYRQASFRRNRGLRIDLTLVSEALRAQVVASGIDCVPRGWER 245
Query: 108 LSTHCPLTIEYDF 120
S H P IE
Sbjct: 246 PSDHAPAWIELAL 258
>gi|158338364|ref|YP_001519541.1| exodeoxyribonuclease III [Acaryochloris marina MBIC11017]
gi|158308605|gb|ABW30222.1| exodeoxyribonuclease III [Acaryochloris marina MBIC11017]
Length = 268
Score = 80.3 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 19/132 (14%)
Query: 7 EWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQK------------------MD 47
E L + ++ + +I GDFN ++ D ++ +
Sbjct: 133 ELLHHYVEKLLSQDPQHLLICGDFNIALDDRDMHDPSKREAHIMSTDRERQALQKVLALG 192
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + +F + E R S D+ + R K
Sbjct: 193 LEDVFRKFNSKSEQFSWWNYRAGSFQRNKGWRIDHHYLTPTLYEQATACTIDAAPRRLPK 252
Query: 108 LSTHCPLTIEYD 119
S H P+ +E D
Sbjct: 253 PSDHAPVVVEID 264
>gi|302525892|ref|ZP_07278234.1| exodeoxyribonuclease III [Streptomyces sp. AA4]
gi|302434787|gb|EFL06603.1| exodeoxyribonuclease III [Streptomyces sp. AA4]
Length = 265
Score = 80.3 bits (196), Expect = 9e-14, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 18/133 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E L ++++ PF + GDFN D +K+ GL
Sbjct: 130 EKLSDLVGEELRHARPFAVLGDFNVAPTDEDVWDISVFAESTHVTEPERAALKKLRDAGL 189
Query: 52 LIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
FP+ + R + + + D + ++ +
Sbjct: 190 SDVFPRPLKYDHPFTYWDYRAGNFPNNKGMRIDLVYGNEVFAKAVTDSYVDREARKGKGP 249
Query: 109 STHCPLTIEYDFE 121
S H P+ ++ + +
Sbjct: 250 SDHAPIVVDLELD 262
>gi|148255795|ref|YP_001240380.1| exodeoxyribonuclease III [Bradyrhizobium sp. BTAi1]
gi|146407968|gb|ABQ36474.1| Exodeoxyribonuclease III [Bradyrhizobium sp. BTAi1]
Length = 263
Score = 79.9 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 38/134 (28%), Gaps = 18/134 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGL 51
L+ + +++KT P ++AGDFN + ++ F +
Sbjct: 130 RLRDYTRERLKTEEPLILAGDFNVIPAAADVSNPEAWVEDALFRPETRESFQALLGLGLT 189
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQSDLDTRRSKLS 109
++ + L+ S +V K S
Sbjct: 190 DALRAVTDAPGQYTFWDYQAGAWQKNAGIRIDHLLLSPQASDRLVEVGIDSYVRAWEKPS 249
Query: 110 THCPLTIEYDFEKG 123
H P+ ++D E
Sbjct: 250 DHVPVWADFDLETA 263
>gi|294340117|emb|CAZ88488.1| putative exodeoxyribonuclease III [Thiomonas sp. 3As]
Length = 253
Score = 79.9 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
+ L+ W +++ + GDFN D +
Sbjct: 124 DALQAWVAAELQRYAKVALMGDFNIAPEDRDVFDPVAWAGQIHCTPEERGHFKALLGLGL 183
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q +S RN + + D+ S+ S + +
Sbjct: 184 IDAFRAFDQPPKSWSWWDYRNLAFRKNQGLRIDHILVSEGLRDSLQSCVIDKAPRKNERP 243
Query: 109 STHCPLTI 116
S H P+
Sbjct: 244 SDHAPVIA 251
>gi|162147973|ref|YP_001602434.1| endonuclease/exonuclease/phosphatase family protein
[Gluconacetobacter diazotrophicus PAl 5]
gi|209542591|ref|YP_002274820.1| endonuclease/exonuclease/phosphatase [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786550|emb|CAP56132.1| putative endonuclease/exonuclease/phosphatase family
[Gluconacetobacter diazotrophicus PAl 5]
gi|209530268|gb|ACI50205.1| Endonuclease/exonuclease/phosphatase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 290
Score = 79.9 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L++Q L W Q+ G+PF++ GDFNR + D F+ +D DG L + S
Sbjct: 178 LARQMAVLDDWVAQRQDEGVPFLVMGDFNRNLTP---GDPFFHLLDQDGPLTLATAGRAS 234
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
C +D+ ++ + +L +S +++YD+ D R LS HCP+++ +
Sbjct: 235 PCW---GGTYFIDHLLLGNQARGWLRPDSLRVLTYDEQD-PARAPALSDHCPVSVRLEMP 290
>gi|282901543|ref|ZP_06309465.1| Exodeoxyribonuclease III xth [Cylindrospermopsis raciborskii
CS-505]
gi|281193586|gb|EFA68561.1| Exodeoxyribonuclease III xth [Cylindrospermopsis raciborskii
CS-505]
Length = 260
Score = 79.9 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 18/127 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDG 50
LK + + +K+ ++ GDFN + I +
Sbjct: 133 LKTYLEVLLKSNSDVIMCGDFNIALEDIDIYKQVDTENQIMASLLERKALREILNLGFGD 192
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+F + + R + D+ S + + S
Sbjct: 193 GFRKFNSQGGNYSWWDYRTGAFKRNSGWRIDHHYLTDVLYKQAKSCLIDISPRKLEQPSD 252
Query: 111 HCPLTIE 117
H P+ +E
Sbjct: 253 HAPVVVE 259
>gi|115375620|ref|ZP_01462877.1| exodeoxyribonuclease III [Stigmatella aurantiaca DW4/3-1]
gi|115367396|gb|EAU66374.1| exodeoxyribonuclease III [Stigmatella aurantiaca DW4/3-1]
Length = 263
Score = 79.9 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 19/131 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L+++ + + P V+ GD+N I D
Sbjct: 132 RLRRYLEARHTPDQPLVLCGDWNVAPEPIDVYDPAVWEGQTLFTLKERDALQQVCAFGLA 191
Query: 50 GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ ++ R S + D+ +V + + + +
Sbjct: 192 DTFRKLHPGVEKKFSWWDYRGLSFPKNLGVRIDHIFATAPLVQRLVKAEIDREERKGKQP 251
Query: 109 STHCPLTIEYD 119
S H P+ E+
Sbjct: 252 SDHAPVWAEFR 262
>gi|88813281|ref|ZP_01128520.1| hypothetical protein NB231_07277 [Nitrococcus mobilis Nb-231]
gi|88789453|gb|EAR20581.1| hypothetical protein NB231_07277 [Nitrococcus mobilis Nb-231]
Length = 556
Score = 79.9 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 33/129 (25%), Gaps = 12/129 (9%)
Query: 1 MLSQQGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
+ +Q L +W + F++ GD N + P +
Sbjct: 430 LRRRQAAALSQWLKRLQAAVDQPRFLLMGDLNSYPGEAAVQTLLSAGLRDLIAERVAPAD 489
Query: 59 KESTCNVIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ V LD+ + + + + Y + S
Sbjct: 490 R--YTYVYHGYAGYLDHALATVALADAVGQVAIWHINADEPRYLGYTNPRAKPTFYRSSD 547
Query: 111 HCPLTIEYD 119
H P+ ++
Sbjct: 548 HDPVVVDLR 556
>gi|33861041|ref|NP_892602.1| exodeoxyribonuclease III [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33639773|emb|CAE18943.1| exodeoxyribonuclease III [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 281
Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------FWQKMDPD-----------G 50
L + D ++K + GDFN + I K++ +
Sbjct: 135 LSAFLDDQVKNDDLVCLVGDFNIAPSEIDIHTPQKYEGGIMASKIEREALNNVLKGRFID 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + RN + D+ + S + S + S
Sbjct: 195 SFRIFEKNTGHWSWWDYRNNAYELNKGWRIDHIYISKNLSSKLKSCVIERNQRENLQPSD 254
Query: 111 HCPLTIEYDFEK 122
H P+ I + +
Sbjct: 255 HAPVLINLEIDS 266
>gi|124022407|ref|YP_001016714.1| exodeoxyribonuclease III [Prochlorococcus marinus str. MIT 9303]
gi|123962693|gb|ABM77449.1| exodeoxyribonuclease III [Prochlorococcus marinus str. MIT 9303]
Length = 279
Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 18/131 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD--G 50
L ++ + K P + GDFN + + + +
Sbjct: 135 LNRYLSAQAKRDEPLCLVGDFNIALEARDIHHPERLTGGIMASELEREALLKVLGDRLHD 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ F + R+ + D+ + S K S
Sbjct: 195 VFRVFEPDANHWSWWDYRSGAWDRDQGWRIDHIYLCDELLSQARSCVIHKHLRGHEKPSD 254
Query: 111 HCPLTIEYDFE 121
H P+T++ ++
Sbjct: 255 HAPVTVDLNWP 265
>gi|325917489|ref|ZP_08179695.1| Exodeoxyribonuclease III [Xanthomonas vesicatoria ATCC 35937]
gi|325536283|gb|EGD08073.1| Exodeoxyribonuclease III [Xanthomonas vesicatoria ATCC 35937]
Length = 259
Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 30/131 (22%), Gaps = 19/131 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E + W Q+++ V+ GDFN ++ D +
Sbjct: 124 EAVHDWIAQELQRHPQLVVLGDFNIAPDARDVHDPVVWNEAHILTSAAERAALEKLLALG 183
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ E R + + D V +
Sbjct: 184 LHDAFRLHHDDAEQFSWWDYRQAAYRRNLGLRIDLTLVSDALRARAVGAGIDREPRTWER 243
Query: 108 LSTHCPLTIEY 118
S H P ++
Sbjct: 244 PSDHAPAWVQL 254
>gi|261854637|ref|YP_003261920.1| exodeoxyribonuclease III Xth [Halothiobacillus neapolitanus c2]
gi|261835106|gb|ACX94873.1| exodeoxyribonuclease III Xth [Halothiobacillus neapolitanus c2]
Length = 257
Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 32/130 (24%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E W +I V+ GDFN + D ++ ++ G
Sbjct: 127 EAFSNWLALEIAQHPNLVVMGDFNIAPSDADVFDPERFKDAVLCSPPERDYFNRLLAMGF 186
Query: 52 LI---RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F E+ + R + D+ + +
Sbjct: 187 TDALNCFSNEENNFTWWDYRGGGYRRNHGLRIDHILTSPAVQAKATACHVDKEPRGWERP 246
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 247 SDHAPVVLTL 256
>gi|254508339|ref|ZP_05120461.1| metal-dependent hydrolase [Vibrio parahaemolyticus 16]
gi|219548753|gb|EED25756.1| metal-dependent hydrolase [Vibrio parahaemolyticus 16]
Length = 295
Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L +QGE L W ++ G ++I GDFN ++ D W+ + D +E ++
Sbjct: 179 LKRQGEALNHWIREREAHGERYMILGDFNHNMSYP--KDWLWEIVSQDSTAKLATRETKA 236
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---SKLSTHCPLTIE 117
TC V RN S + + + + S+ +Q + T KLS HCP+T+
Sbjct: 237 TCKVRSRNNPSKTHQFRSL-IDHVITSDQISVSKIEQRNYKTDDLFRYKLSDHCPITLT 294
>gi|254422826|ref|ZP_05036544.1| exodeoxyribonuclease III [Synechococcus sp. PCC 7335]
gi|196190315|gb|EDX85279.1| exodeoxyribonuclease III [Synechococcus sp. PCC 7335]
Length = 261
Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDG 50
LK++ +++ + GDFN + + D + +
Sbjct: 134 LKQYLVHQLEAHPKLNVCGDFNIALENKDIYTDKNRDKHIMSSPVERQTLRDVLSVGLSD 193
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+F E R S D+ S + + S
Sbjct: 194 AFRKFTDEGGHFSWWDYRTNSFARNTGWRIDHHYLSPSLYEIATSCTIDTVPRGLERPSD 253
Query: 111 HCPLTIEY 118
H P+T+EY
Sbjct: 254 HAPVTVEY 261
>gi|269959773|ref|ZP_06174152.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269835527|gb|EEZ89607.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 287
Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 6/123 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ QQG+ L KW + +V+ GDFN + G D W+ + + + +
Sbjct: 168 IVKQQGQALAKWIKAREDNKQQYVVLGDFNHNLGYRG--DWLWEVLSDNTDAKLVTKNTK 225
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS---DLDTRRSKLSTHCPLTIE 117
+ C V + + + ++ S Q+ D KLS HCP++
Sbjct: 226 AECKVRSNRNPNKTHQFRSV-IDHIIVSGDLKASSGVQTVFKTQDVLDYKLSDHCPVSTT 284
Query: 118 YDF 120
F
Sbjct: 285 LSF 287
>gi|302866656|ref|YP_003835293.1| exodeoxyribonuclease III Xth [Micromonospora aurantiaca ATCC 27029]
gi|302569515|gb|ADL45717.1| exodeoxyribonuclease III Xth [Micromonospora aurantiaca ATCC 27029]
Length = 265
Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats.
Identities = 14/134 (10%), Positives = 33/134 (24%), Gaps = 18/134 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L+ + ++ +P + GDFN D + +
Sbjct: 128 ALRDALEPEVAGALPVAVCGDFNVAPTDADVWDPALFVTSTHVTPAERAALAALRDLGLK 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ + R + D + ++ S + S
Sbjct: 188 DVVPTPMKGPHPFTYWDYRAGMFHQNKGMRIDLVYASASFARAVRSAYVDREARKGKGPS 247
Query: 110 THCPLTIEYDFEKG 123
H P+ ++ D
Sbjct: 248 DHAPIVVDADLTPA 261
>gi|220909952|ref|YP_002485263.1| exodeoxyribonuclease III Xth [Cyanothece sp. PCC 7425]
gi|219866563|gb|ACL46902.1| exodeoxyribonuclease III Xth [Cyanothece sp. PCC 7425]
Length = 268
Score = 79.5 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 31/131 (23%), Gaps = 19/131 (14%)
Query: 7 EWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQK------------------MD 47
+ L+ + VI GDFN + D ++ +
Sbjct: 136 DLLRDYLKTLQAQAPQDMVICGDFNIALEDRDIHDPQGRETQVMATDTERQALQAILDLG 195
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+F E R S D+ V+ +
Sbjct: 196 FADGFRKFTAEGGHFSWWDYRAGSFRRDRGWRIDHLYLNQSLYAKAVACTIDKTPRHNPQ 255
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 256 PSDHTPVILEL 266
>gi|319942253|ref|ZP_08016568.1| exodeoxyribonuclease III Xth [Sutterella wadsworthensis 3_1_45B]
gi|319804126|gb|EFW01026.1| exodeoxyribonuclease III Xth [Sutterella wadsworthensis 3_1_45B]
Length = 269
Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 31/130 (23%), Gaps = 18/130 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-FWQK-----------------MDPDG 50
L++ + V+ GDFN + W+ +
Sbjct: 140 LERTLKTYLADTPRLVLGGDFNIAPADADVWNPEAWRGKILCSEPERKALERLFALGLYD 199
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q E R + D ++ S D + S
Sbjct: 200 SFRLFTQPAERFSWWDYRQSGFERNHGLRIDLLLVSEALKGAVESASIDDGPRGNPQPSD 259
Query: 111 HCPLTIEYDF 120
H P+ ++
Sbjct: 260 HAPVMLDLSL 269
>gi|226941364|ref|YP_002796438.1| XthA [Laribacter hongkongensis HLHK9]
gi|226716291|gb|ACO75429.1| XthA [Laribacter hongkongensis HLHK9]
Length = 255
Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 12/129 (9%), Positives = 28/129 (21%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPD 49
L + + + V+ GDFN + +
Sbjct: 127 RLHAYLAAERERHPKLVLTGDFNIAPDDRDVYSPESWAGKVLCSVPERQAFGDLLGLGLV 186
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R + D+ + S+ + + + S
Sbjct: 187 DAFRQLHDGDGHYSWWDYRQGMFRRDKGLRIDHVLLSAPLAASLEACHIDKVPRGWERPS 246
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 247 DHAPVVARF 255
>gi|315503070|ref|YP_004081957.1| exodeoxyribonuclease iii xth [Micromonospora sp. L5]
gi|315409689|gb|ADU07806.1| exodeoxyribonuclease III Xth [Micromonospora sp. L5]
Length = 265
Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 14/134 (10%), Positives = 34/134 (25%), Gaps = 18/134 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L+ + ++ +P + GDFN D + + +
Sbjct: 128 ALRDALESEVAGALPVAVCGDFNVAPTDADVWDPALFVTSTHVTPAERAALAALRDLGLE 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ + R + D + ++ S + S
Sbjct: 188 DVVPTPMKGPHPFTYWDYRAGMFHQNKGMRIDLVYASASFARAVRSAYVDREARKGKGPS 247
Query: 110 THCPLTIEYDFEKG 123
H P+ ++ D
Sbjct: 248 DHAPIVVDADLTPA 261
>gi|254523139|ref|ZP_05135194.1| exodeoxyribonuclease III [Stenotrophomonas sp. SKA14]
gi|219720730|gb|EED39255.1| exodeoxyribonuclease III [Stenotrophomonas sp. SKA14]
Length = 260
Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 33/132 (25%), Gaps = 19/132 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E + W ++++ ++ GDFN ++ D ++
Sbjct: 124 EAVHAWIAEELQRHPKLIVMGDFNIAPDARDVHDPEVWNENHILTSTAERGALNKLLQLG 183
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
E + R + D S V+ +
Sbjct: 184 LHDGFRLHNDEAGTFSWWDYRAAGFRRNLGLRIDLTLVSDALKGSAVASGIDREPRTWER 243
Query: 108 LSTHCPLTIEYD 119
S H P +E +
Sbjct: 244 PSDHAPAWVEVE 255
>gi|86749875|ref|YP_486371.1| exodeoxyribonuclease III [Rhodopseudomonas palustris HaA2]
gi|86572903|gb|ABD07460.1| Exodeoxyribonuclease III [Rhodopseudomonas palustris HaA2]
Length = 276
Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 36/134 (26%), Gaps = 18/134 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGL 51
L ++ Q++KT P ++AGDFN I + F +
Sbjct: 143 RLLEYTQQRLKTEEPLILAGDFNVIPQPIDVHNPAGWVDDALFRPQTRESFQALLGLGLT 202
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLS 109
++ + L+ + + K S
Sbjct: 203 DALRASTDAPGQYTFWDYQAGAWQKNWGLRIDHLLLSPQATDRLRNVGIDAYVRNWEKPS 262
Query: 110 THCPLTIEYDFEKG 123
H P+ ++D +
Sbjct: 263 DHVPVWADFDLDAA 276
>gi|190576404|ref|YP_001974249.1| putative endonuclease/exonuclease/phosphatase family protein
[Stenotrophomonas maltophilia K279a]
gi|190014326|emb|CAQ47973.1| putative endonuclease/exonuclease/phosphatase family protein
[Stenotrophomonas maltophilia K279a]
Length = 255
Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 30/131 (22%), Gaps = 19/131 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
+ + W Q+++ ++ GDFN ++ D ++
Sbjct: 124 QAVHAWIAQELQRHPKLIVMGDFNIAPDARDVHDPEVWNENHILTSTAERGALQKLLQLG 183
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
E R + D V+ +
Sbjct: 184 LHDGFRLHNDEAGVFSWWDYRAAGFRRNLGLRIDLTLVSDALKAGAVASGIDREPRTWER 243
Query: 108 LSTHCPLTIEY 118
S H P +E
Sbjct: 244 PSDHAPAWVEI 254
>gi|226358180|ref|YP_002787919.1| Exodeoxyribonuclease III [Deinococcus deserti VCD115]
gi|226319823|gb|ACO47817.1| putative Exodeoxyribonuclease III [Deinococcus deserti VCD115]
Length = 270
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 29/130 (22%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDP---D 49
++ W ++ + GDFN ++ +
Sbjct: 125 AVRAWLQLELMAHPRLAVVGDFNVAPEDRDVHSPKRWAGQVLVSEPERQAFRALLDLGLH 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
PQ + + + D+ + S R + S
Sbjct: 185 DAFRLHPQPERVFSWWNYGRLGFPRNWGLRIDHVLVSGILAAECQSCTVDLEPRRHERPS 244
Query: 110 THCPLTIEYD 119
H P+ +
Sbjct: 245 DHAPVVATFS 254
>gi|33239934|ref|NP_874876.1| exonuclease III [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33237460|gb|AAP99528.1| Exonuclease III [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 276
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 36/131 (27%), Gaps = 18/131 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD------------------PDG 50
LKK+ + + + P + GDFN + + +
Sbjct: 135 LKKYFESQEERSEPLCLMGDFNIVLEEKDIHNPKRFNNGIMASLSEREALQNVLGTRLED 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ F + R+ + D+ + + S + S
Sbjct: 195 VFRLFEADTGHWSWWDYRSGAWQKDQGWRIDHIYLSEELINNARSCVIHKKARGNIQPSD 254
Query: 111 HCPLTIEYDFE 121
H P+ ++ ++
Sbjct: 255 HAPVLVDINWP 265
>gi|172038905|ref|YP_001805406.1| exodeoxyribonuclease III [Cyanothece sp. ATCC 51142]
gi|171700359|gb|ACB53340.1| exodeoxyribonuclease III [Cyanothece sp. ATCC 51142]
Length = 262
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 34/131 (25%), Gaps = 19/131 (14%)
Query: 7 EWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MD 47
+ LK + D K I GDFN + + ++ +
Sbjct: 132 QVLKVYLDNLIQKESHELCICGDFNIALEDKDIYNSKGKENHIMSSPLEREALENILEIG 191
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+F E R+ D+ ++ ++ K
Sbjct: 192 LQDAFRKFTTEGGHFSWWDYRSGGFQRNRGWRIDHLYLTNKLYGKAINCTIDIEPRKQEK 251
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 252 PSDHTPVILEI 262
>gi|87303215|ref|ZP_01086008.1| exodeoxyribonuclease III [Synechococcus sp. WH 5701]
gi|87282110|gb|EAQ74071.1| exodeoxyribonuclease III [Synechococcus sp. WH 5701]
Length = 283
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
L+++ + G P + GDFN ++ D
Sbjct: 134 LERYLKVQDADGDPVCMVGDFNIALDDRDIHDPKRLSGGIMASDPERDALRLALDERLAD 193
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ F E+ R+ + D+ + K S
Sbjct: 194 VFRLFEPERGHWSWWDYRSGAWDRDSGWRIDHIYLSQELQERATGCLIHKAVRGNDKPSD 253
Query: 111 HCPLTIEYDFE 121
H P+ ++ +
Sbjct: 254 HAPVVVQVQWP 264
>gi|296138207|ref|YP_003645450.1| exodeoxyribonuclease III Xth [Tsukamurella paurometabola DSM 20162]
gi|296026341|gb|ADG77111.1| exodeoxyribonuclease III Xth [Tsukamurella paurometabola DSM 20162]
Length = 289
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
EWL DQ +P ++ GD N D + +
Sbjct: 128 EWLAALRDQVSADSVPQLVCGDMNIAPTDEDVFDPAAFAGHTHVTEPERDALRALEDLGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + R + D + + +
Sbjct: 188 RDVVREHWPTDQVFSYWDYRAGMFNKNLGMRIDLILASGPVADRTAAAWIDRQARKGKGP 247
Query: 109 STHCPLTIEYD 119
S H P+ ++ D
Sbjct: 248 SDHAPVMLDLD 258
>gi|21233468|ref|NP_639385.1| exodeoxyribonuclease III [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66770432|ref|YP_245194.1| exodeoxyribonuclease III [Xanthomonas campestris pv. campestris
str. 8004]
gi|188993642|ref|YP_001905652.1| Exodeoxyribonuclease III [Xanthomonas campestris pv. campestris
str. B100]
gi|21115315|gb|AAM43267.1| exodeoxyribonuclease III [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66575764|gb|AAY51174.1| exodeoxyribonuclease III [Xanthomonas campestris pv. campestris
str. 8004]
gi|167735402|emb|CAP53617.1| Exodeoxyribonuclease III [Xanthomonas campestris pv. campestris]
Length = 259
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 28/131 (21%), Gaps = 19/131 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E + W Q+++ V+ GDFN ++ + +
Sbjct: 124 EAVHDWIAQELQRHPQLVVLGDFNIAPDARDVYEPEVWSDNHILTSTAERGALHKLLALG 183
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ R + + D V +
Sbjct: 184 LHDAFRLHHDDAGHFSWWDYRQAAYRRNLGLRIDLTLVSDALRARAVEAGIDREPRTWER 243
Query: 108 LSTHCPLTIEY 118
S H P +
Sbjct: 244 PSDHAPAWVRL 254
>gi|33863562|ref|NP_895122.1| exodeoxyribonuclease III [Prochlorococcus marinus str. MIT 9313]
gi|33641011|emb|CAE21469.1| exodeoxyribonuclease III [Prochlorococcus marinus str. MIT 9313]
Length = 279
Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 36/134 (26%), Gaps = 18/134 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD--G 50
L ++ + K P + GDFN + + + +
Sbjct: 135 LNRYLCAQAKRDEPLCLVGDFNIALEARDIHHPELLTGGIMASELEREALLKVLGDRLHD 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ F + R+ + D+ + S K S
Sbjct: 195 VFRVFEPDANHWSWWDYRSGAWDRDQGWRIDHIYLCDELLSQARSCVIHKHLRGHEKPSD 254
Query: 111 HCPLTIEYDFEKGN 124
H P++++ ++ +
Sbjct: 255 HAPVSVDLNWTPTD 268
>gi|78212211|ref|YP_380990.1| exodeoxyribonuclease III [Synechococcus sp. CC9605]
gi|78196670|gb|ABB34435.1| exodeoxyribonuclease III [Synechococcus sp. CC9605]
Length = 288
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 39/134 (29%), Gaps = 18/134 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDP--DG 50
LK++ D + + G P + GDFN + + D +
Sbjct: 146 LKRYLDAQQQRGEPLCMVGDFNIGLEARDLPDPDRQTGGIMASDAERQALRDALGDRLQD 205
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ F + R+ + D+ + S + S
Sbjct: 206 VFRVFEPDSGHWSWWDYRSGAWDRDRGWRIDHIYLCDELLGLARSCVIHKGMRGNQQPSD 265
Query: 111 HCPLTIEYDFEKGN 124
H P++++ D+ +
Sbjct: 266 HAPVSVDLDWPPAD 279
>gi|115524629|ref|YP_781540.1| exodeoxyribonuclease III [Rhodopseudomonas palustris BisA53]
gi|115518576|gb|ABJ06560.1| Exodeoxyribonuclease III [Rhodopseudomonas palustris BisA53]
Length = 263
Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 34/134 (25%), Gaps = 18/134 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------QKMDPD 49
+ L + ++++T P ++AGDFN + +
Sbjct: 128 MQRLFDYTKERLRTEEPLILAGDFNVIPAPADVYNALAWVDDALFKPQTRESFQALLGLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ ++ + L+ + K
Sbjct: 188 LTDALRASTDAAGQYTFWDYQAGAWQKNWGIRIDHLLLSPQAADRLTGVGIDRHVRSWEK 247
Query: 108 LSTHCPLTIEYDFE 121
S H P+ ++D E
Sbjct: 248 PSDHVPVWADFDLE 261
>gi|114798114|ref|YP_760171.1| endonuclease/exonuclease/phosphatase family protein [Hyphomonas
neptunium ATCC 15444]
gi|114738288|gb|ABI76413.1| endonuclease/exonuclease/phosphatase family protein [Hyphomonas
neptunium ATCC 15444]
Length = 442
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 8/117 (6%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L Q + L+ W DQ+ G ++ GDFNR++ + D W ++ +
Sbjct: 332 LFDQADVLEAWIDQRSAAGRAVIVGGDFNRRLEAED--DPVWTGLNDGTPAGLHIAGAGT 389
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ R + +D+ ++ ++ SF +YD ++ S HCP+++
Sbjct: 390 GPSCDPRYREFIDFLLLSDTALTRMVAGSFRETTYDTP------ARPSDHCPISLSI 440
>gi|268318163|ref|YP_003291882.1| exodeoxyribonuclease III Xth [Rhodothermus marinus DSM 4252]
gi|262335697|gb|ACY49494.1| exodeoxyribonuclease III Xth [Rhodothermus marinus DSM 4252]
Length = 254
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 37/132 (28%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ L+ + ++ P ++AGDFN ++K+ GL
Sbjct: 123 DRLRAYLERAASPETPLLLAGDFNVAPEPRDVAFPEAWADSVLFHEAARAAFRKLIDWGL 182
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + RN + + D+ + + + K
Sbjct: 183 VDLIRLHHEGPGPFTWWDYRNLAFPRGDGLRIDHLLATPPVAACCTEAGVHREERKGKKP 242
Query: 109 STHCPLTIEYDF 120
S H P+ +
Sbjct: 243 SDHAPVWARLNL 254
>gi|318042025|ref|ZP_07973981.1| exodeoxyribonuclease III [Synechococcus sp. CB0101]
Length = 276
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 34/133 (25%), Gaps = 18/133 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------FWQKMDPD------G 50
LK++ + G P + GDFN + D Q +
Sbjct: 135 LKRYLAVQHDQGDPLCMVGDFNIGPEARDLHDPDRLSGGIMATDAERQALSDALAGRLTD 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ F R+ + D+ + ++ S
Sbjct: 195 VFRVFEPGSGHWSWWDYRSGAWDRDQGWRIDHIYLSEELLDCATGCVIDKTPRGNTQPSD 254
Query: 111 HCPLTIEYDFEKG 123
H P+ + +++
Sbjct: 255 HAPVVVNLAWDEE 267
>gi|126657177|ref|ZP_01728343.1| Exodeoxyribonuclease III xth [Cyanothece sp. CCY0110]
gi|126621448|gb|EAZ92159.1| Exodeoxyribonuclease III xth [Cyanothece sp. CCY0110]
Length = 262
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 35/131 (26%), Gaps = 19/131 (14%)
Query: 7 EWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQK------------------MD 47
+ LK + D IK I GDFN + + ++ +
Sbjct: 132 KVLKAYLDNLIKKESYELCICGDFNIALEDKDIYNSKGKENHIMSSPLEREALEKILKIG 191
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+F E R+ D+ V+ ++ +
Sbjct: 192 LKDAFRKFTTEGGHFSWWDYRSGGLQRNRGWRIDHLYLTNKLYEKAVNCTIDIEPRKQER 251
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 252 PSDHTPVILEI 262
>gi|302537782|ref|ZP_07290124.1| exodeoxyribonuclease III [Streptomyces sp. C]
gi|302446677|gb|EFL18493.1| exodeoxyribonuclease III [Streptomyces sp. C]
Length = 259
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPD 49
L + PF + GDFN D +
Sbjct: 129 ALATAIAEDAAGTRPFAVLGDFNVAPTDEDVYDPAVFAGLTHVTPAERAALEALRTAGLA 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ R + R + + D + ++ + + S
Sbjct: 189 DVMPRALKYDRPYTFWDYRQLAFPKNRGMRIDLVYGNEPFAKAVKDAYVDREERKGKGAS 248
Query: 110 THCPLTIEYDF 120
H P+ ++ D
Sbjct: 249 DHAPVVVDLDL 259
>gi|270159292|ref|ZP_06187948.1| exodeoxyribonuclease III [Legionella longbeachae D-4968]
gi|289165884|ref|YP_003456022.1| exodeoxyribonuclease III XthA [Legionella longbeachae NSW150]
gi|269987631|gb|EEZ93886.1| exodeoxyribonuclease III [Legionella longbeachae D-4968]
gi|288859057|emb|CBJ12986.1| putative exodeoxyribonuclease III XthA [Legionella longbeachae
NSW150]
Length = 259
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 35/134 (26%), Gaps = 18/134 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ + + Q+I + GDFN D ++
Sbjct: 125 QKVTNFIQQQINIYSKIAVVGDFNIAPEDRDVHDPIAWEGSVLVSPAERNAFVQLLQLGF 184
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F QE +S R + + D+ + + + +
Sbjct: 185 HDSFRNFVQEDQSFSWWDYRAAAFRRNRGLRIDHILLSKELNHLCTQSVIDKEPRKVERP 244
Query: 109 STHCPLTIEYDFEK 122
S H P+ + + +
Sbjct: 245 SDHAPVWVALELSE 258
>gi|332708957|ref|ZP_08428928.1| exodeoxyribonuclease III [Lyngbya majuscula 3L]
gi|332352499|gb|EGJ32068.1| exodeoxyribonuclease III [Lyngbya majuscula 3L]
Length = 262
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 36/131 (27%), Gaps = 19/131 (14%)
Query: 7 EWLKKWADQKIKTGIP-FVIAGDFNRKINSIGDTDDFWQK------------------MD 47
+ L+ + ++ + GDFN + + ++ +
Sbjct: 132 KILRDYLHSILEEQSHELCVCGDFNIALEDRDIHNPKGKEKHIMASPVERQALQSVLDLG 191
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+F +E + R ++ D+ + +S + K
Sbjct: 192 LGDAFRKFTKEGGNFSWWDYRTRAFRGNRGWRIDHIYLTPNLYNQAISCTIDIEPRKLDK 251
Query: 108 LSTHCPLTIEY 118
S H P+ +
Sbjct: 252 PSDHSPVIVNL 262
>gi|269967746|ref|ZP_06181794.1| hypothetical protein VMC_32240 [Vibrio alginolyticus 40B]
gi|269827652|gb|EEZ81938.1| hypothetical protein VMC_32240 [Vibrio alginolyticus 40B]
Length = 287
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 6/123 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ QQG+ L KW + +V+ GDFN + G D W + + ++ +
Sbjct: 168 IVKQQGQALAKWIKAREDNKQHYVVLGDFNHNLGYQG--DWLWDVISDNTSAKLVTKDTK 225
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS---DLDTRRSKLSTHCPLTIE 117
+ C V + + + ++ S Q+ D KLS HCP++
Sbjct: 226 AECKVRSNRNPNKTHQFRSV-IDHIIVSGDLKASSGVQTVFKTQDVLDYKLSDHCPVSTT 284
Query: 118 YDF 120
F
Sbjct: 285 LTF 287
>gi|87123786|ref|ZP_01079636.1| Exodeoxyribonuclease III xth [Synechococcus sp. RS9917]
gi|86168355|gb|EAQ69612.1| Exodeoxyribonuclease III xth [Synechococcus sp. RS9917]
Length = 276
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
L+++ + + G P + GDFN + S D
Sbjct: 134 LQRYLQRPQERGEPLCVVGDFNIALESRDMHDPDRLTGGIMASEPERAALKAALGDTLHD 193
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ F + R+ + D+ + + R + S
Sbjct: 194 VFRVFEPDTGHWSWWDYRSGAWDRDRGWRIDHIYLCDELLARARGCLIHKQERGRDQPSD 253
Query: 111 HCPLTIEY 118
H P+ +
Sbjct: 254 HAPVVADL 261
>gi|206602794|gb|EDZ39275.1| Exodeoxyribonuclease III [Leptospirillum sp. Group II '5-way CG']
Length = 265
Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPD 49
L ++ ++ + P ++ GDFN + D +
Sbjct: 135 RLTRYIEKVREAREPVLLMGDFNIVPGDLDTWDPEGFKDQIFHSPPERKALGNIFQAGFS 194
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
L +++ R S + D S + + S
Sbjct: 195 DLYRTLYPDRQEFSWWDYRMGSFHRNRGLRIDLILSTPPLSEQCREVFIDREARKAERPS 254
Query: 110 THCPLTIEYDF 120
H P+T +
Sbjct: 255 DHVPVTALFSL 265
>gi|17232798|ref|NP_489346.1| exodeoxyribonuclease III [Nostoc sp. PCC 7120]
gi|17134445|dbj|BAB77005.1| exodeoxyribonuclease III [Nostoc sp. PCC 7120]
Length = 260
Score = 78.3 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 31/128 (24%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDG 50
L+++ + I GDFN + + + +
Sbjct: 133 LREYLRSLLLLQPAICICGDFNIALEDKDIHEKVKAENHIMASLAERQALRDVLELGFAD 192
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+F E R S D+ S + ++ S
Sbjct: 193 AFRKFTTEGGHFSWWDYRAASFRRNQGWRIDHHYLTPVLYAQAKSCTIDVSPRKLTQPSD 252
Query: 111 HCPLTIEY 118
H P+ +E
Sbjct: 253 HTPVIVEI 260
>gi|113953146|ref|YP_731259.1| exodeoxyribonuclease III [Synechococcus sp. CC9311]
gi|113880497|gb|ABI45455.1| exodeoxyribonuclease III [Synechococcus sp. CC9311]
Length = 274
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 31/130 (23%), Gaps = 18/130 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
L+++ P + GDFN + + D D
Sbjct: 135 LERYLRAIQTRDEPLCVMGDFNIGLEARDLPDPDRLTGGIMASDRERNALKAALGPDLQD 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F R+ + D+ S + R + S
Sbjct: 195 AFRLFEPNSGHWSWWDYRSGAWDRGRGWRIDHIYLDETLRAVARSCSIDKQERGRIQPSD 254
Query: 111 HCPLTIEYDF 120
H P+ ++ +
Sbjct: 255 HAPVVVDLAW 264
>gi|156976926|ref|YP_001447832.1| hypothetical protein VIBHAR_05711 [Vibrio harveyi ATCC BAA-1116]
gi|156528520|gb|ABU73605.1| hypothetical protein VIBHAR_05711 [Vibrio harveyi ATCC BAA-1116]
Length = 287
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 6/123 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ QQG+ L KW + +V+ GDFN + G D W+ + + + +
Sbjct: 168 IVKQQGQALAKWIKAREDNKQQYVVLGDFNHNLGYRG--DWLWEVLSDNTDAKLVTKNTK 225
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS---DLDTRRSKLSTHCPLTIE 117
+ C V + + ++ S Q+ D KLS HCP++
Sbjct: 226 AECKVRSNRNPKKTHQFRSV-IDHIIVSGDLKASSGVQTVFKTQDVLDYKLSDHCPVSTT 284
Query: 118 YDF 120
F
Sbjct: 285 LTF 287
>gi|163804004|ref|ZP_02197820.1| hypothetical protein 1103602000450_AND4_08521 [Vibrio sp. AND4]
gi|159172186|gb|EDP57103.1| hypothetical protein AND4_08521 [Vibrio sp. AND4]
Length = 261
Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 6/123 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ QQG+ L KW + +V+ GDFN + G D W+ + D ++ +
Sbjct: 142 IVKQQGQALAKWMKAREDNKQHYVVLGDFNHNLGYRG--DWLWRVLSDDTDAKLMTKDTQ 199
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS---DLDTRRSKLSTHCPLTIE 117
+ C V + + + ++ Q+ D KLS HCP++
Sbjct: 200 AQCKVRSNRNPNKTHQFRSM-IDHIIVSGQLMASPSVQTVFKTQDVLDYKLSDHCPVSSV 258
Query: 118 YDF 120
F
Sbjct: 259 LSF 261
>gi|299134949|ref|ZP_07028140.1| exodeoxyribonuclease III [Afipia sp. 1NLS2]
gi|298589926|gb|EFI50130.1| exodeoxyribonuclease III [Afipia sp. 1NLS2]
Length = 260
Score = 77.6 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 37/133 (27%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMD 47
+ L ++A +++K+ PFV+AGDFN + +
Sbjct: 128 MDRLIEYARERLKSEEPFVLAGDFNVIPTPADVYNPQAWLEDALFLPQTRDKFQTLLNLG 187
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + I D+ S + + K
Sbjct: 188 LTDAFRATSDAPRQYTFWDYQAGAWQKNNGIRIDHLLMSPPASDRLKAAGIDKHVRGWEK 247
Query: 108 LSTHCPLTIEYDF 120
S H P+ + DF
Sbjct: 248 ASDHVPVWADLDF 260
>gi|319943026|ref|ZP_08017309.1| exodeoxyribonuclease III [Lautropia mirabilis ATCC 51599]
gi|319743568|gb|EFV95972.1| exodeoxyribonuclease III [Lautropia mirabilis ATCC 51599]
Length = 268
Score = 77.6 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 32/129 (24%), Gaps = 20/129 (15%)
Query: 9 LKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
L++W Q + + ++AGDFN D +
Sbjct: 134 LQEWIAQLRREEPDTGVILAGDFNIAPADADVHDPAVWADGILVSGPEREALQGLLALGL 193
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q + R + D + + + K
Sbjct: 194 HDAFRLFEQPPKLFSWWDYRALGFRRNAGLRIDLILVSDELKPMVGRCWIDKGPRKLEKP 253
Query: 109 STHCPLTIE 117
S H P+ +E
Sbjct: 254 SDHTPVVVE 262
>gi|90423996|ref|YP_532366.1| exodeoxyribonuclease III [Rhodopseudomonas palustris BisB18]
gi|90106010|gb|ABD88047.1| Exodeoxyribonuclease III [Rhodopseudomonas palustris BisB18]
Length = 267
Score = 77.6 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 34/134 (25%), Gaps = 18/134 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGL 51
L +A +++KT P ++AGDFN + F +
Sbjct: 134 RLLDYAKERLKTEEPLILAGDFNVIPAPGDVYNPAAWVGDALFKPQTRESFQALLGLGLS 193
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLS 109
+ ++ + L+ + K S
Sbjct: 194 DALRAVTDAPSQYTFWDYQAGAWQKNWGIRIDHLLLSPQAADRLTGVGIDKHVRSWEKPS 253
Query: 110 THCPLTIEYDFEKG 123
H P+ I+ D
Sbjct: 254 DHVPVWIDLDLAAA 267
>gi|327399082|ref|YP_004339951.1| exodeoxyribonuclease III Xth [Hippea maritima DSM 10411]
gi|327181711|gb|AEA33892.1| exodeoxyribonuclease III Xth [Hippea maritima DSM 10411]
Length = 258
Score = 77.6 bits (189), Expect = 5e-13, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 17/130 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLI 53
LK + + +I GDFN + D +++ G +
Sbjct: 128 LKSFLSKHYSIEDKLIILGDFNVAMEENDVYDVKQMEGKIGFHPEERKALKELYSWGFVD 187
Query: 54 RF--PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F ++++ R S + D + R+ K S H
Sbjct: 188 LFRKFNKEKAFSWWDYRAASFWKDRGLRIDYIWSTPTLADKCKDCFIDKSYRRKKKPSDH 247
Query: 112 CPLTIEYDFE 121
P+ ++ E
Sbjct: 248 APVVAVFELE 257
>gi|153832821|ref|ZP_01985488.1| metal-dependent hydrolase [Vibrio harveyi HY01]
gi|148870955|gb|EDL69845.1| metal-dependent hydrolase [Vibrio harveyi HY01]
Length = 287
Score = 77.6 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 6/123 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ QQG+ L KW + +V+ GDFN + G D W + + + +
Sbjct: 168 IVKQQGQALAKWIKARENNKQQYVVLGDFNHNLGYRG--DWLWDVLSDNTDAKLVTKNTK 225
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS---DLDTRRSKLSTHCPLTIE 117
+ C V + + ++ S Q+ D KLS HCP++
Sbjct: 226 AECKVRSNRNPKKTHQFRSV-IDHIIVSGDLKASSGVQTVFKTQDVLDYKLSDHCPVSTT 284
Query: 118 YDF 120
F
Sbjct: 285 LTF 287
>gi|298370009|ref|ZP_06981325.1| exodeoxyribonuclease III [Neisseria sp. oral taxon 014 str. F0314]
gi|298281469|gb|EFI22958.1| exodeoxyribonuclease III [Neisseria sp. oral taxon 014 str. F0314]
Length = 256
Score = 77.6 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 36/137 (26%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
QQ L ++ ++ V+ GDFN D +++ +
Sbjct: 120 KQQWFAALTEFVRDEMARYEKLVLLGDFNIAPTDDDCYDAEKWRGKILCTDSERGWFKNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ S +
Sbjct: 180 LDLGLTDSLRKIHPEGAFYTWFDYRGAMFQRGLGLRIDHLLVSPALSAVLKDVQVDSDAR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ + S H P+ E+D
Sbjct: 240 AQERPSDHAPVWAEFDL 256
>gi|320007613|gb|ADW02463.1| exodeoxyribonuclease III Xth [Streptomyces flavogriseus ATCC 33331]
Length = 260
Score = 77.6 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 34/131 (25%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
E L++ +PF + GD+N D +
Sbjct: 128 EALREAVAADAAGTLPFAVLGDYNIAPTDEDVWDPAVFEGATHVTPAEREALAALRGTGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + R + + D + ++ + +
Sbjct: 188 SDVVPRPLKYDRPYSYWDYRQLAFPKNRGMRIDLVYGNAPFAAAVKDSYVDREERKGKGA 247
Query: 109 STHCPLTIEYD 119
S H P+ ++ D
Sbjct: 248 SDHAPVVVDLD 258
>gi|148982124|ref|ZP_01816600.1| hypothetical protein VSWAT3_19371 [Vibrionales bacterium SWAT-3]
gi|145960657|gb|EDK26003.1| hypothetical protein VSWAT3_19371 [Vibrionales bacterium SWAT-3]
Length = 291
Score = 77.6 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L +Q + L KW Q+ + + I GDFN + D W+++ ++ +
Sbjct: 174 LKEQAQQLNKWIKQRERNNEDYAILGDFNHNLAYS--RDWIWKELTQYTDAQLATRKTRA 231
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ---SDLDTRRSKLSTHCPLTIEY 118
C V + + + ++ S + Q D KLS HCP++
Sbjct: 232 DCKVRSNRNNHRTHQFRSV-IDHIVVSESLNAAPAKQQVFKTQDVLDYKLSDHCPVSTTI 290
Query: 119 D 119
+
Sbjct: 291 N 291
>gi|123965783|ref|YP_001010864.1| exodeoxyribonuclease III [Prochlorococcus marinus str. MIT 9515]
gi|123200149|gb|ABM71757.1| exodeoxyribonuclease III [Prochlorococcus marinus str. MIT 9515]
Length = 281
Score = 77.2 bits (188), Expect = 6e-13, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 37/134 (27%), Gaps = 18/134 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------FWQKMDPD-----------G 50
L + D++++ GDFN I K++ +
Sbjct: 135 LSSFLDKQVREDDLVCFVGDFNIAPFDIDIHCPQKYEGGIMASKIEREALKKVIKGRFID 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + RN + D+ + S + S S+ S
Sbjct: 195 SFRIFEKNTGHWSWWDYRNNAYELNKGWRIDHIYISNNLSSQLKSCVIERSQRENSQPSD 254
Query: 111 HCPLTIEYDFEKGN 124
H P+ I + + +
Sbjct: 255 HAPVLINLEIDNQS 268
>gi|91224719|ref|ZP_01259980.1| hypothetical protein V12G01_08258 [Vibrio alginolyticus 12G01]
gi|91190607|gb|EAS76875.1| hypothetical protein V12G01_08258 [Vibrio alginolyticus 12G01]
Length = 287
Score = 77.2 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 6/123 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ QQG+ L KW + +V+ GDFN + G D W + + ++ +
Sbjct: 168 IVKQQGQALAKWIKAREDNKQHYVVLGDFNHNLGYQG--DWLWDVISDNTSAKLVTKDTK 225
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS---DLDTRRSKLSTHCPLTIE 117
+ C V + + + + S Q+ D KLS HCP++
Sbjct: 226 AECKVRSNRNPNKTHQFRSV-IDHIIASGDLKASSGVQTVFKTQDVLDYKLSDHCPVSTT 284
Query: 118 YDF 120
F
Sbjct: 285 LTF 287
>gi|119513165|ref|ZP_01632214.1| Exodeoxyribonuclease III xth [Nodularia spumigena CCY9414]
gi|119462186|gb|EAW43174.1| Exodeoxyribonuclease III xth [Nodularia spumigena CCY9414]
Length = 260
Score = 77.2 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------DFWQKMDP------DG 50
L+++ + + + GDFN + + + Q +
Sbjct: 133 LREYLQTLLLSQPGICMCGDFNIALAAEDIHENANPDNHIMSSEPERQGLRDVLELGFAD 192
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+F E R D+ S S + + S
Sbjct: 193 AFRKFTTEGGHYSWWDYRAAGFRRNRGWRIDHHYLTPTLYESAKSCIIDITPRKLPQPSD 252
Query: 111 HCPLTIEY 118
H P+ +E+
Sbjct: 253 HTPVIVEF 260
>gi|302522772|ref|ZP_07275114.1| exodeoxyribonuclease III [Streptomyces sp. SPB78]
gi|318058357|ref|ZP_07977080.1| exodeoxyribonuclease III [Streptomyces sp. SA3_actG]
gi|302431667|gb|EFL03483.1| exodeoxyribonuclease III [Streptomyces sp. SPB78]
Length = 262
Score = 76.8 bits (187), Expect = 9e-13, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
E L+ PF + GD+N D ++ GL
Sbjct: 131 EALRAAVAGDAAGTRPFAVMGDYNVAPGDEDVYDPAVFEGLTHVTPPERAALAELRATGL 190
Query: 52 LIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
P+ + R + + D + + +
Sbjct: 191 GDLVPRPLKYDRPYTYWDYRQLAFPKNRGMRIDLVYANAAFRSAAKDAYVDREERKGKGA 250
Query: 109 STHCPLTIEYD 119
S H P+ ++ D
Sbjct: 251 SDHAPVVVDLD 261
>gi|83311632|ref|YP_421896.1| exonuclease III [Magnetospirillum magneticum AMB-1]
gi|82946473|dbj|BAE51337.1| Exonuclease III [Magnetospirillum magneticum AMB-1]
Length = 440
Score = 76.8 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 19/133 (14%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQ---KMD 47
L+ A + GIPFV+ GDFN D W+ +
Sbjct: 308 MARLRTHAQALLAQGIPFVLGGDFNICPTDDDVYDPPKWRDDALCRPDSRAAWRSIVNLG 367
Query: 48 PDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
++ + + + D+ + + + + +
Sbjct: 368 LTEAFRALHPGEKGRYSFWDYQAGAWQRDEGLRIDHFLLSPQAADCLHACEIDKAPRGKE 427
Query: 107 KLSTHCPLTIEYD 119
K S H P+ IE +
Sbjct: 428 KASDHTPVWIELE 440
>gi|332969618|gb|EGK08636.1| exodeoxyribonuclease III [Kingella kingae ATCC 23330]
Length = 256
Score = 76.8 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FW 43
+Q L +W ++++ V+ GDFN D
Sbjct: 120 KRQWFAALTQWVREQMQQYDKLVLLGDFNIAPADDDVYDPEKWREQIHCSSEERAWFQTL 179
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ L + R + D+ + S+ +
Sbjct: 180 LDLGLTDCLRQIHPTGVHYTWFDYRGAMFQRKLGLRIDHILASQSLASSLHDVRVDLEER 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ + S H P++ +D
Sbjct: 240 AQERPSDHAPVSAWFDL 256
>gi|75908773|ref|YP_323069.1| exodeoxyribonuclease III [Anabaena variabilis ATCC 29413]
gi|75702498|gb|ABA22174.1| Exodeoxyribonuclease III [Anabaena variabilis ATCC 29413]
Length = 260
Score = 76.8 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 31/128 (24%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDG 50
LK++ + I GDFN + + + +
Sbjct: 133 LKEYLRSLLLLQPSICICGDFNIALEDKDIHEKVKAENHIMASPAERQALRDVLELGFAD 192
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+F E R S D+ S + ++ S
Sbjct: 193 AFRKFTTEGGHFSWWDYRAASFRRNQGWRIDHHYLTPVLYEQAKSCIIDVSPRKLTQPSD 252
Query: 111 HCPLTIEY 118
H P+ +E
Sbjct: 253 HTPVIVEI 260
>gi|124514320|gb|EAY55834.1| Exodeoxyribonuclease III [Leptospirillum rubarum]
Length = 265
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPD 49
L ++ ++ P ++ GDFN + D +
Sbjct: 135 RLTRYIEKVRAAPDPVLLMGDFNIVPGDLDTWDPAGFKDQIFHSPPERNALGNIFRTGFA 194
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
L +++ R S + D S + + S
Sbjct: 195 DLYRTLYPDRQEFSWWDYRMGSFHRNRGLRIDLILSTPPLSEQCQEVFIDREARKAERPS 254
Query: 110 THCPLTIEYDF 120
H P+T +
Sbjct: 255 DHVPVTALFAL 265
>gi|116073418|ref|ZP_01470680.1| Exodeoxyribonuclease III xth [Synechococcus sp. RS9916]
gi|116068723|gb|EAU74475.1| Exodeoxyribonuclease III xth [Synechococcus sp. RS9916]
Length = 276
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 37/128 (28%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLL 52
LK++ + + P I GDFN + + D + + +
Sbjct: 135 LKRYREAAQERDEPLCIVGDFNIGMEARDIHDPERLTGGIMASDAERTALNEALGEGMVD 194
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLST 110
+ E ++ +S + + + S + + + S
Sbjct: 195 VFRAFEPDAGHWSWWDYRSGAWNRDSGWRIDHIYLSEDLLDLARSCVIHKQERGKEQPSD 254
Query: 111 HCPLTIEY 118
H P+ ++
Sbjct: 255 HAPVVVDL 262
>gi|330466791|ref|YP_004404534.1| exodeoxyribonuclease III Xth [Verrucosispora maris AB-18-032]
gi|328809762|gb|AEB43934.1| exodeoxyribonuclease III Xth [Verrucosispora maris AB-18-032]
Length = 265
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 31/128 (24%), Gaps = 18/128 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L+ D ++ G + GDFN D + +
Sbjct: 128 ALRDALDAELTDGRALAVCGDFNVAPTDDDVWDPALFATSTHVTPAERAALAALRDLGLV 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ + R + D + ++ S + S
Sbjct: 188 DVVPTPMKGPHPFTYWDYRAGMFHQNKGMRIDLVYASAPFARTVSSAYVDREARKGRSPS 247
Query: 110 THCPLTIE 117
H P+ ++
Sbjct: 248 DHAPIVVD 255
>gi|282864972|ref|ZP_06274026.1| exodeoxyribonuclease III Xth [Streptomyces sp. ACTE]
gi|282560397|gb|EFB65945.1| exodeoxyribonuclease III Xth [Streptomyces sp. ACTE]
Length = 259
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 34/131 (25%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E L+K +PF + GDFN D + GL
Sbjct: 128 EALRKAVAADAAGPVPFAVLGDFNIAPTDDDVWDPSLFEGATHVTPAERDALAALRAGGL 187
Query: 52 LIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
P+ + R + D + ++ + +
Sbjct: 188 SDVVPRPLKYDHPYTYWDYRQLGFPKNRGMRIDLVYGNAPFAAAVQDSYVDREERKGKGA 247
Query: 109 STHCPLTIEYD 119
S H P+ ++ D
Sbjct: 248 SDHAPVVVDLD 258
>gi|217979561|ref|YP_002363708.1| exodeoxyribonuclease III Xth [Methylocella silvestris BL2]
gi|217504937|gb|ACK52346.1| exodeoxyribonuclease III Xth [Methylocella silvestris BL2]
Length = 303
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 37/131 (28%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ L +A + + +P ++AGD+N + +Q + G
Sbjct: 126 QRLTDYAAELLALKVPVILAGDYNIIPTELDVYKPERWVDDALFRLEVREAFQILVSQGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + D+ + +++ D K
Sbjct: 186 TDALRTLHPGERVYTFWDYFRNAWDRNAGLRLDHLLLNPPVTKRLIAADVDRAVRGWEKA 245
Query: 109 STHCPLTIEYD 119
S H P+ IE
Sbjct: 246 SDHAPVWIELS 256
>gi|116072855|ref|ZP_01470120.1| Exodeoxyribonuclease III xth [Synechococcus sp. BL107]
gi|116064381|gb|EAU70142.1| Exodeoxyribonuclease III xth [Synechococcus sp. BL107]
Length = 282
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 18/134 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
LK++ + +K G P + GDFN + +
Sbjct: 135 LKRYLEHPLKRGEPLCVVGDFNIALEARDMHAPDRLSGGIMASDAERQALQMALANGLQD 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ F + R+ + D+ + S K S
Sbjct: 195 VFRVFEPDAGHWSWWDYRSGAWDRDRGWRIDHIYLCDELLGLARSCVIHKSVRGNDKPSD 254
Query: 111 HCPLTIEYDFEKGN 124
H P++++ D+ +
Sbjct: 255 HAPVSVDLDWPPSD 268
>gi|318081282|ref|ZP_07988614.1| exodeoxyribonuclease III [Streptomyces sp. SA3_actF]
Length = 259
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
E L+ PF + GD+N D ++ GL
Sbjct: 128 EALRAAVAGDAAGTRPFAVMGDYNVAPGDEDVYDPAVFEGLTHVTPPERAALAELRATGL 187
Query: 52 LIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
P+ + R + + D + + +
Sbjct: 188 GDLVPRPLKYDRPYTYWDYRQLAFPKNRGMRIDLVYANAAFRSAAKDAYVDREERKGKGA 247
Query: 109 STHCPLTIEYD 119
S H P+ ++ D
Sbjct: 248 SDHAPVVVDLD 258
>gi|325267794|ref|ZP_08134444.1| exodeoxyribonuclease III [Kingella denitrificans ATCC 33394]
gi|324980675|gb|EGC16337.1| exodeoxyribonuclease III [Kingella denitrificans ATCC 33394]
Length = 258
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 30/136 (22%), Gaps = 19/136 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FW 43
+Q L + Q+++ V+ GDFN D
Sbjct: 120 KRQWFAALTDFIRQQMQQYPKLVLLGDFNIAPTDDDVYDPEKWREHIHCSSEERAWFQAL 179
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ L R + D+ +
Sbjct: 180 LDLGLTDCLRHVHPTGAHYTWWDYRGAMFQRKLGLRIDHILATAALRDVLRDVQIDTEAR 239
Query: 104 RRSKLSTHCPLTIEYD 119
+ + S H P+ +D
Sbjct: 240 AKERPSDHAPVFALFD 255
>gi|83942567|ref|ZP_00955028.1| exodeoxyribonuclease III [Sulfitobacter sp. EE-36]
gi|83846660|gb|EAP84536.1| exodeoxyribonuclease III [Sulfitobacter sp. EE-36]
Length = 265
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
+ L+ A + PF++ GDFN + W+++ G
Sbjct: 133 MQRLEDRARALLAEETPFLLTGDFNIIPQAEDAATPDAWREDALFRPESRAAWRRLLALG 192
Query: 51 LLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
L F + ++ +FL+ + + R K
Sbjct: 193 LTEAFRARTQGPGHYSFWDYQAGAWNRNNGIRIDHFLLSPAIADSLRDCQIDKDVRGREK 252
Query: 108 LSTHCPLTIEYDF 120
S H P+ +E D
Sbjct: 253 PSDHVPVWVELDL 265
>gi|255035926|ref|YP_003086547.1| exodeoxyribonuclease III Xth [Dyadobacter fermentans DSM 18053]
gi|254948682|gb|ACT93382.1| exodeoxyribonuclease III Xth [Dyadobacter fermentans DSM 18053]
Length = 260
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ L A + G P ++ GDFN + + K+ G
Sbjct: 129 DRLITHAQGLLAAGKPVLLTGDFNVMPTELDVYKPESWVDDALFRPETRAAFAKLMDQGW 188
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+++ + + D+ + + +++ K
Sbjct: 189 TDAIRTLYPDEKIYTFWDYFRNAFARNAGLRIDHFLLSPNLAPRLIAAGVDKQVRGWEKT 248
Query: 109 STHCPLTIEY 118
S H P+ IE
Sbjct: 249 SDHAPVWIEL 258
>gi|288549534|ref|ZP_05967343.2| exodeoxyribonuclease III [Enterobacter cancerogenus ATCC 35316]
gi|288318297|gb|EFC57235.1| exodeoxyribonuclease III [Enterobacter cancerogenus ATCC 35316]
Length = 354
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 14/139 (10%), Positives = 31/139 (22%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + ++ P +I GD N + +
Sbjct: 216 QDLQDYLTAELNKENPVLIMGDVNISPTDLDIGIGEESRKRWLRTGKCSFLPEEREWMER 275
Query: 43 WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + R+K D + D + +
Sbjct: 276 LIGWGLVDTFRAANPDTQDRFSWFDYRSKGFDDNRGLRIDLLLASAPLAERCIETGIDYD 335
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ ++
Sbjct: 336 IRGMEKPSDHAPVWAKFKL 354
>gi|325497093|gb|EGC94952.1| exonuclease III [Escherichia fergusonii ECD227]
Length = 329
Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 191 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 250
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 251 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 310
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 311 IRSMEKPSDHAPVWATFR 328
>gi|22299328|ref|NP_682575.1| exodeoxyribonuclease III [Thermosynechococcus elongatus BP-1]
gi|22295511|dbj|BAC09337.1| exodeoxyribonuclease III [Thermosynechococcus elongatus BP-1]
Length = 280
Score = 76.0 bits (185), Expect = 1e-12, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 31/126 (24%), Gaps = 19/126 (15%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDGLLI 53
+ +Q G ++ GDFN D + +
Sbjct: 156 YLEQLTTQGE-VILCGDFNIAPEDKDLFDASDRATKVGATDAERNLLAAIRDLGFHDAFR 214
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+F + R+ + D+ + R K S H P
Sbjct: 215 QFTEAPGHYSWWDYRSGAFRRNHGWRIDHLYVTPGVKARACNCHIDIAPRRLPKPSDHAP 274
Query: 114 LTIEYD 119
+ +E +
Sbjct: 275 VILEIE 280
>gi|328886193|emb|CCA59432.1| Exodeoxyribonuclease III [Streptomyces venezuelae ATCC 10712]
Length = 271
Score = 76.0 bits (185), Expect = 1e-12, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGL 51
E LK + PF + GD+N D + GL
Sbjct: 138 EALKAAVAEDAAGDRPFAVLGDYNIAPTDDDVWDRAAFEGLTHVTEPERAALAGLREAGL 197
Query: 52 LIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
P+ + R + D + ++ + +
Sbjct: 198 SDVVPRPLKYDHPFTYWDYRQLCFPKNRGMRIDLVYGNKPFAEAVTDSYVDREERKGKGA 257
Query: 109 STHCPLTIEYD 119
S H P+ ++ D
Sbjct: 258 SDHAPVVVDLD 268
>gi|194367742|ref|YP_002030352.1| exodeoxyribonuclease III [Stenotrophomonas maltophilia R551-3]
gi|194350546|gb|ACF53669.1| exodeoxyribonuclease III [Stenotrophomonas maltophilia R551-3]
Length = 258
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 31/131 (23%), Gaps = 19/131 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E + W ++++ ++ GDFN ++ D ++
Sbjct: 127 EAVHAWIAEELQRHPKLIVMGDFNIAPDARDVHDPEVWNENHILTSTAERGALNKLLQLG 186
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
E R + D S V+ +
Sbjct: 187 LHDGFRLHNDEAGVFSWWDYRAAGFRRDLGLRIDLTLVSDALKGSAVASGIDREPRTWER 246
Query: 108 LSTHCPLTIEY 118
S H P ++
Sbjct: 247 PSDHAPAWVQI 257
>gi|92117300|ref|YP_577029.1| exodeoxyribonuclease III (xth) [Nitrobacter hamburgensis X14]
gi|91800194|gb|ABE62569.1| Exodeoxyribonuclease III [Nitrobacter hamburgensis X14]
Length = 266
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 18/132 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGL 51
L +++ +++K+ FV+AGDFN + F +
Sbjct: 130 RLIEYSKERLKSEETFVLAGDFNVIPAPRDVYNPAAWVDDALFRPQTREAFQTLLGLGLT 189
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQSDLDTRRSKLS 109
+ ++ + L+ S + + K S
Sbjct: 190 DALRAASDATGDYTFWDYQAGAWQKNNGLRIDHLLLSPQASDRLSAVGIDRHVRGWEKAS 249
Query: 110 THCPLTIEYDFE 121
H P+ I+ D +
Sbjct: 250 DHVPVWIDLDLD 261
>gi|186474317|ref|YP_001861659.1| exodeoxyribonuclease III Xth [Burkholderia phymatum STM815]
gi|184196649|gb|ACC74613.1| exodeoxyribonuclease III Xth [Burkholderia phymatum STM815]
Length = 308
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 18/133 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDG 50
E L +A + + +G P V+AGD+N + + + +D
Sbjct: 126 ERLIVYAKRLLDSGHPVVLAGDYNVVPTDFDIYNPRSWLKDALLQPESRACYARLLDQGW 185
Query: 51 LLIRF--PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+++ + + D+ + +
Sbjct: 186 TDALRTRFPDEQIFTFWDYFRQHWERNSGLRIDHLLLNRPVAAMMRDAGVDRWVRGEPHA 245
Query: 109 STHCPLTIEYDFE 121
S H P +E D E
Sbjct: 246 SDHAPAWVELDLE 258
>gi|85716516|ref|ZP_01047487.1| Exodeoxyribonuclease III xth [Nitrobacter sp. Nb-311A]
gi|85696705|gb|EAQ34592.1| Exodeoxyribonuclease III xth [Nitrobacter sp. Nb-311A]
Length = 279
Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGL 51
L +++ +++K+ FV+AGDFN + F +
Sbjct: 143 RLIEYSKERLKSEEAFVLAGDFNVIPAPRDVYNPASWVDDALFRPHTRQAFQTLLGLGLT 202
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLS 109
+ ++ + L+ S K S
Sbjct: 203 DALRAASDAAGEYTFWDYQAGAWQKNNGLRIDHLLLSPQASDRLGGVGIDRHVRGWEKAS 262
Query: 110 THCPLTIEYDFE 121
H P+ I+ D E
Sbjct: 263 DHVPVWIDLDLE 274
>gi|294626440|ref|ZP_06705040.1| exodeoxyribonuclease III [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292599239|gb|EFF43376.1| exodeoxyribonuclease III [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 259
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 27/130 (20%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDP 48
W Q+++ V+ GDFN ++ D +
Sbjct: 125 AAHDWIAQELQRYPQLVVLGDFNIAPDARDVHDATVWNEHHILTSTDERAALDKLLALGL 184
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
Q+ E R + D V +
Sbjct: 185 HDAFRLHNQDAEHFSWWDYRQAGFRRNLGLRIDLTLVSDTLCARAVESGIDREPRTWERP 244
Query: 109 STHCPLTIEY 118
S H P +
Sbjct: 245 SDHAPAWVRL 254
>gi|283785027|ref|YP_003364892.1| exodeoxyribonuclease III [Citrobacter rodentium ICC168]
gi|282948481|emb|CBG88070.1| exodeoxyribonuclease III [Citrobacter rodentium ICC168]
Length = 268
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 36/138 (26%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + D ++K P +I GD N + + +
Sbjct: 130 QNLQNYLDSELKRDNPVLIMGDMNISPSDRDIGIGEENRRRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPD--GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
++ E R+K D + D + V
Sbjct: 190 LLNWGLVDTFRHAHPETNDKFSWFDYRSKGFDDNRGLRIDLLLASQPLAERCVETGIDYA 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ ++D
Sbjct: 250 IRGMEKPSDHAPVWAKFD 267
>gi|254382239|ref|ZP_04997600.1| exonuclease [Streptomyces sp. Mg1]
gi|194341145|gb|EDX22111.1| exonuclease [Streptomyces sp. Mg1]
Length = 261
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 31/133 (23%), Gaps = 18/133 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
L + PF + GD+N D +
Sbjct: 128 RALTAAVAEDAAGPRPFAVLGDYNVAPTDEDVFDPAVFEGLTHVTPAERAALEALRAAGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + R + + D + ++ + +
Sbjct: 188 SDVVPRPLKYDRPYTYWDYRQLAFPKNRGMRIDLVYGNEAFAKAVTDAYVDREERKGKGA 247
Query: 109 STHCPLTIEYDFE 121
S H P+ ++ E
Sbjct: 248 SDHAPVVVDLSLE 260
>gi|148284985|ref|YP_001249075.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Boryong]
gi|146740424|emb|CAM80902.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Boryong]
Length = 273
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 28/127 (22%), Gaps = 18/127 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDGLL 52
K+ G ++ GDFN + +
Sbjct: 147 KYLHSSKNLGESIILGGDFNVAPYDNDVYSAIELQNTTCFTLPEKQYIRKLINHNFIDIY 206
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
F Q ++ R + + D I + + S H
Sbjct: 207 RLFHQRQKKFTWWDYRAGAFERNLGMRIDYILCTISIALKATDCYIDYHTRNNHRASDHA 266
Query: 113 PLTIEYD 119
P+ ++
Sbjct: 267 PVIASFE 273
>gi|170759835|ref|YP_001786903.1| exodeoxyribonuclease III [Clostridium botulinum A3 str. Loch Maree]
gi|169406824|gb|ACA55235.1| exodeoxyribonuclease III [Clostridium botulinum A3 str. Loch Maree]
Length = 253
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 36/130 (27%), Gaps = 22/130 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E L + D+ +K G VI GD+N N I + +
Sbjct: 127 EALFNYCDELVKEGKKLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWLDKIIERGY 186
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+K R K+ + N+ + ++
Sbjct: 187 TDTFRNMNPDKIKYSWWSYRFKARERNAGW--RIDYHFVSNNL--LDRVENTEILNEVYG 242
Query: 109 STHCPLTIEY 118
S HCP+ +E
Sbjct: 243 SDHCPVMLEL 252
>gi|329119607|ref|ZP_08248288.1| exodeoxyribonuclease III [Neisseria bacilliformis ATCC BAA-1200]
gi|327464204|gb|EGF10508.1| exodeoxyribonuclease III [Neisseria bacilliformis ATCC BAA-1200]
Length = 276
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/141 (12%), Positives = 36/141 (25%), Gaps = 19/141 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FW 43
+Q L ++ ++ V+ GDFN D
Sbjct: 133 KKQWFAALTEFVRGELARHDKLVLLGDFNIAPADADCYDPEKWRGKILCTDQERGWFQTL 192
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ L R E R + D+ + ++ +
Sbjct: 193 LGLGLTDSLRRIHPEGAFYTWFDYRGAMFQRGLGLRIDHLLTTPALAAALQNAAVDLDAR 252
Query: 104 RRSKLSTHCPLTIEYDFEKGN 124
+ + S H P+ E+ + +
Sbjct: 253 AQERPSDHAPVWAEFALQPTD 273
>gi|153937900|ref|YP_001390827.1| exodeoxyribonuclease III [Clostridium botulinum F str. Langeland]
gi|168180137|ref|ZP_02614801.1| exodeoxyribonuclease III [Clostridium botulinum NCTC 2916]
gi|170757676|ref|YP_001781117.1| exodeoxyribonuclease III [Clostridium botulinum B1 str. Okra]
gi|226948816|ref|YP_002803907.1| exodeoxyribonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|152933796|gb|ABS39294.1| exodeoxyribonuclease III [Clostridium botulinum F str. Langeland]
gi|169122888|gb|ACA46724.1| exodeoxyribonuclease III [Clostridium botulinum B1 str. Okra]
gi|182668909|gb|EDT80885.1| exodeoxyribonuclease III [Clostridium botulinum NCTC 2916]
gi|226843845|gb|ACO86511.1| exodeoxyribonuclease III [Clostridium botulinum A2 str. Kyoto]
gi|295318896|gb|ADF99273.1| exodeoxyribonuclease III [Clostridium botulinum F str. 230613]
gi|322805797|emb|CBZ03362.1| exodeoxyribonuclease III [Clostridium botulinum H04402 065]
Length = 253
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 36/130 (27%), Gaps = 22/130 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E L + D+ +K G VI GD+N N I + +
Sbjct: 127 EALFNYCDELVKEGKKLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWLDKIIERGY 186
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+K R K+ + N+ + ++
Sbjct: 187 TDTFRNMNPDKIKYSWWSYRFKARERNAGW--RIDYHFVSNNL--LDRVENTEILNEVYG 242
Query: 109 STHCPLTIEY 118
S HCP+ +E
Sbjct: 243 SDHCPVMLEL 252
>gi|148379451|ref|YP_001253992.1| exodeoxyribonuclease III [Clostridium botulinum A str. ATCC 3502]
gi|153934303|ref|YP_001383830.1| exodeoxyribonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|153935156|ref|YP_001387380.1| exodeoxyribonuclease III [Clostridium botulinum A str. Hall]
gi|148288935|emb|CAL83022.1| putative exodeoxyribonuclease [Clostridium botulinum A str. ATCC
3502]
gi|152930347|gb|ABS35847.1| exodeoxyribonuclease III [Clostridium botulinum A str. ATCC 19397]
gi|152931070|gb|ABS36569.1| exodeoxyribonuclease III [Clostridium botulinum A str. Hall]
Length = 253
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 36/130 (27%), Gaps = 22/130 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E L + D+ +K G VI GD+N N I + +
Sbjct: 127 EALFNYCDELVKEGKKLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWLDKIIERGY 186
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+K R K+ + N+ + ++
Sbjct: 187 TDTFRNMNPDKIKYSWWSYRFKARERNAGW--RIDYHFVSNNL--LDRVENTEILNEVYG 242
Query: 109 STHCPLTIEY 118
S HCP+ +E
Sbjct: 243 SDHCPVMLEL 252
>gi|333023524|ref|ZP_08451588.1| putative exodeoxyribonuclease III [Streptomyces sp. Tu6071]
gi|332743376|gb|EGJ73817.1| putative exodeoxyribonuclease III [Streptomyces sp. Tu6071]
Length = 259
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
E L+ PF + GD+N D ++ GL
Sbjct: 128 EALRTAVAGDAAGTRPFAVMGDYNVAPGDEDVYDPAVFEGLTHVTPPERAALAELRATGL 187
Query: 52 LIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
P+ + R + + D + + +
Sbjct: 188 GDLVPRPLKYDRPYTYWDYRQLAFPKNRGMRIDLVYANAAFRSAAKDAYVDREERKGKGA 247
Query: 109 STHCPLTIEYD 119
S H P+ ++ D
Sbjct: 248 SDHAPVVVDLD 258
>gi|325922607|ref|ZP_08184358.1| Exodeoxyribonuclease III [Xanthomonas gardneri ATCC 19865]
gi|325546902|gb|EGD18005.1| Exodeoxyribonuclease III [Xanthomonas gardneri ATCC 19865]
Length = 259
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 28/130 (21%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDP 48
+ +W Q+++ ++ GDFN ++ D +
Sbjct: 125 AVHEWLAQELQKYPQLMVLGDFNIAPDARDVHDPSVWNEHHILTSTAERAALEKLLALGL 184
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ E R + D V +
Sbjct: 185 HDAFRLHHDDAEQFSWWDYRQAGFRRNLGLRIDLTLVSDALRARAVESGIDREPRTWERP 244
Query: 109 STHCPLTIEY 118
S H P +
Sbjct: 245 SDHAPAWVRL 254
>gi|99080738|ref|YP_612892.1| exodeoxyribonuclease III [Ruegeria sp. TM1040]
gi|99037018|gb|ABF63630.1| Exodeoxyribonuclease III [Ruegeria sp. TM1040]
Length = 268
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E LK A + + +P ++AGD+N + F + ++
Sbjct: 136 MERLKARAAELMAEEMPALMAGDYNIIPQAEDAKRPEAWREDALHRPESRAAFQRIVNLG 195
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + ++ +FL+ + + R K
Sbjct: 196 FTEAFRTRTRGPGHYTFWDYQAGAWNRDDGIRIDHFLLTPQAADLLRDCQIDKDIRGREK 255
Query: 108 LSTHCPLTIEYDF 120
S H P+ ++ D
Sbjct: 256 PSDHVPIWVDLDL 268
>gi|261381264|ref|ZP_05985837.1| exodeoxyribonuclease III [Neisseria subflava NJ9703]
gi|284795738|gb|EFC51085.1| exodeoxyribonuclease III [Neisseria subflava NJ9703]
Length = 256
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 38/136 (27%), Gaps = 19/136 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D +++ +
Sbjct: 120 KEQWFAALTEFVRTEMAAHPKLVLLGDFNIAPADADCYDPEKWHEKIHCSSIERQWFKNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + + ++
Sbjct: 180 LDLGLTDSLRKIHPEDAFYTWFDYRGGMFQRKLGLRIDHILTSPELAATLTDVTVDLETR 239
Query: 104 RRSKLSTHCPLTIEYD 119
+ + S H P+ E+D
Sbjct: 240 AQERPSDHAPVIAEFD 255
>gi|319639504|ref|ZP_07994253.1| exodeoxyribonuclease III [Neisseria mucosa C102]
gi|317399270|gb|EFV79942.1| exodeoxyribonuclease III [Neisseria mucosa C102]
Length = 256
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 38/136 (27%), Gaps = 19/136 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D +++ +
Sbjct: 120 KEQWFAALTEFVRAEMAAHPKLVLLGDFNIAPADADCYDPEKWHEKIHCSSIERQWFKNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + + ++
Sbjct: 180 LDLGLTDSLRKVHPEGAFYTWFDYRGAMFQRKLGLRIDHILTSPELAANLTDVTVDLETR 239
Query: 104 RRSKLSTHCPLTIEYD 119
+ + S H P+ E+D
Sbjct: 240 AQERPSDHAPVIAEFD 255
>gi|83953786|ref|ZP_00962507.1| exodeoxyribonuclease III [Sulfitobacter sp. NAS-14.1]
gi|83841731|gb|EAP80900.1| exodeoxyribonuclease III [Sulfitobacter sp. NAS-14.1]
Length = 265
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
+ L+ A + PF++ GDFN + W+++ G
Sbjct: 133 MQRLEDRARALLAEETPFLLTGDFNIIPQAEDAATPDAWREDALFRPESRAAWRRLLALG 192
Query: 51 LLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
L F + ++ +FL+ + + R K
Sbjct: 193 LTEAFRARTQGPGHYSFWDYQAGAWNRNNGIRIDHFLLSPAIADSLRDCQIDKDVRGREK 252
Query: 108 LSTHCPLTIEYDF 120
S H P+ +E D
Sbjct: 253 PSDHVPVWVELDL 265
>gi|189184108|ref|YP_001937893.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Ikeda]
gi|189180879|dbj|BAG40659.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Ikeda]
Length = 264
Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 28/127 (22%), Gaps = 18/127 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDGLL 52
K+ G ++ GDFN + +
Sbjct: 138 KYLHSSKNLGESIILGGDFNVAPYDNDVYSAIELQNTTCFTLPEKQYIRKLINHNFIDIY 197
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
F Q ++ R + + D I + + S H
Sbjct: 198 RLFHQRQKKFTWWDYRAGAFERNLGMRIDYILCTISIALKATDCYIDYHTRNNHRASDHA 257
Query: 113 PLTIEYD 119
P+ ++
Sbjct: 258 PVIASFE 264
>gi|295835706|ref|ZP_06822639.1| exodeoxyribonuclease III [Streptomyces sp. SPB74]
gi|295825643|gb|EDY45706.2| exodeoxyribonuclease III [Streptomyces sp. SPB74]
Length = 262
Score = 75.3 bits (183), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
E L+ PF + GD+N D K+ GL
Sbjct: 131 EALRTAVADDAAGARPFAVLGDYNVAPGDEDVYDPAVFEGLTHVTPPEREALAKLRATGL 190
Query: 52 LIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
P+ + R + + D + + +
Sbjct: 191 GDLVPRPLKYDRPYTYWDYRQLAFPKNRGMRIDLVYANAAFRTAAKGAYVDREERKGKGA 250
Query: 109 STHCPLTIEYD 119
S H P+ ++ +
Sbjct: 251 SDHAPVVVDLE 261
>gi|218676474|ref|YP_002395293.1| Endonuclease/Exonuclease/phosphatase family [Vibrio splendidus
LGP32]
gi|218324742|emb|CAV26393.1| Endonuclease/Exonuclease/phosphatase family [Vibrio splendidus
LGP32]
Length = 291
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 6/120 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L Q + L KW Q+ + G + I GDFN ++ D W+ + + ++ +
Sbjct: 174 LKDQAQQLNKWIQQRERQGQDYAILGDFNHNLSYS--RDWMWKDLTQNADAQLATRKTRA 231
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ---SDLDTRRSKLSTHCPLTIEY 118
C V + + + ++ S Q D KLS HCP++
Sbjct: 232 DCKVRSNRNNHRTHQFRSV-IDHIVVSKSLDASPAKQKVFETQDVLDYKLSDHCPVSTTI 290
>gi|317969204|ref|ZP_07970594.1| exodeoxyribonuclease III [Synechococcus sp. CB0205]
Length = 273
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLL 52
L+++ + + G P + GDFN + D +
Sbjct: 132 LQRYLAVQEEQGDPLCMVGDFNIGLEDRDLPDPQRLSGTIMASDPERSALRAALADRLTD 191
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLST 110
+ E S +S + + + + S
Sbjct: 192 VFRVFEPGSGHWSWWDYRSGAWDRDLGWRIDHIYLSEELLGCATGCVIDKQPRGNVQPSD 251
Query: 111 HCPLTIEYDFE 121
H P+ + +
Sbjct: 252 HAPVVVNLAWP 262
>gi|166710239|ref|ZP_02241446.1| exodeoxyribonuclease III [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 259
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 28/130 (21%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDP 48
W Q+++T V+ GDFN ++ D +
Sbjct: 125 AAHDWIAQELQTYPQLVVLGDFNIAPDARDVHDATVWNEHHILTSTDERAALEKLLALGL 184
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
Q+ E R + D V +
Sbjct: 185 HDAFRLHTQDAEHFSWWDYRQAGFRRNLGLRIDLTLVSDALRTRAVESGIDREPRTWERP 244
Query: 109 STHCPLTIEY 118
S H P +
Sbjct: 245 SDHAPAWVRL 254
>gi|227355788|ref|ZP_03840181.1| exodeoxyribonuclease III [Proteus mirabilis ATCC 29906]
gi|227164107|gb|EEI49004.1| exodeoxyribonuclease III [Proteus mirabilis ATCC 29906]
Length = 268
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 30/137 (21%), Gaps = 25/137 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+++ + P +I GD N
Sbjct: 132 LQQYLTTSLTPSSPVLIMGDLNISPTDKDIGIGENNMKRWLKMGKCSFLPEEREWLATLM 191
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
E + R+K D + D + + +S
Sbjct: 192 GWGLTDTYRAQHPEVENQFSWFDYRSKGFDDNRGLRIDLLLASRCLADNCISTGIDYDIR 251
Query: 104 RRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 252 AMEKPSDHAPVWAEFKL 268
>gi|187779869|ref|ZP_02996342.1| hypothetical protein CLOSPO_03465 [Clostridium sporogenes ATCC
15579]
gi|187773494|gb|EDU37296.1| hypothetical protein CLOSPO_03465 [Clostridium sporogenes ATCC
15579]
Length = 253
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 22/131 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E L + D+ ++ G VI GD+N N I + +
Sbjct: 127 EALFNYCDELVEEGKKLVICGDYNTAHNEIDLKNPKANEKASGFLRIERDWLDKIIERGY 186
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+K R K+ + N+ + ++
Sbjct: 187 IDTFRNMNPDKIKYSWWSYRFKARERNAGW--RIDYHFVSNNL--LDRVENTEILNEVYG 242
Query: 109 STHCPLTIEYD 119
S HCP+ +E +
Sbjct: 243 SDHCPVMLELE 253
>gi|315122019|ref|YP_004062508.1| hypothetical protein CKC_01345 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495421|gb|ADR52020.1| hypothetical protein CKC_01345 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 315
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 60/122 (49%), Positives = 83/122 (68%), Gaps = 2/122 (1%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L+ Q WL KW QK ++ IPF+IAGDFNRKIN GD D+ W K+ D +LIR P +K S
Sbjct: 192 LNLQVNWLNKWIHQKKRSNIPFIIAGDFNRKINHFGDNDELWGKISKDTILIRVPNKKRS 251
Query: 62 TCNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
CN K R + +D+FV+D++ +LI+NS+S VSY + D+ R +LS HCP+T +Y+
Sbjct: 252 WCNAHKSIRKREPIDFFVMDQNAYKYLIENSYSEVSYIEEDIKKRGYRLSDHCPITTDYN 311
Query: 120 FE 121
FE
Sbjct: 312 FE 313
>gi|294666217|ref|ZP_06731470.1| exodeoxyribonuclease III [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292603990|gb|EFF47388.1| exodeoxyribonuclease III [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 259
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 27/130 (20%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDP 48
W Q+++ V+ GDFN ++ D +
Sbjct: 125 AAHDWIAQELQRYPQLVVLGDFNIAPDARDVHDATVWNEHHILTSTDERAALDKLLALGL 184
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
Q+ E R + D V +
Sbjct: 185 HDAFRLHNQDAEHFSWWDYRQAGFRRNLGLRIDLTLVSDTLRARAVESGIDREPRTWERP 244
Query: 109 STHCPLTIEY 118
S H P +
Sbjct: 245 SDHAPAWVRL 254
>gi|254464825|ref|ZP_05078236.1| exodeoxyribonuclease III [Rhodobacterales bacterium Y4I]
gi|206685733|gb|EDZ46215.1| exodeoxyribonuclease III [Rhodobacterales bacterium Y4I]
Length = 268
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E LK A+ + +P ++AGD+N + F + ++
Sbjct: 136 MERLKARAEALLADEMPALMAGDYNIIPQAEDAKRPEAWAEDALFRPQSRAAFQRIVNLG 195
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + ++ + L+ + + R K
Sbjct: 196 FTEAFRARHQGPGHYSFWDYQAGAWNRNDGIRIDHILLTPQAADLLLDCQIDKDVRGREK 255
Query: 108 LSTHCPLTIEYD 119
S H P+ +E D
Sbjct: 256 PSDHVPVWVELD 267
>gi|289641553|ref|ZP_06473715.1| exodeoxyribonuclease III Xth [Frankia symbiont of Datisca
glomerata]
gi|289508648|gb|EFD29585.1| exodeoxyribonuclease III Xth [Frankia symbiont of Datisca
glomerata]
Length = 425
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L+ ++ + T P + GDFN D +
Sbjct: 212 ALRASVEKALTT-APVIACGDFNIAPTDADVWDPAAFAGATHVTDAERRALRELTDLGLV 270
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ R +++ R + D + + + + S
Sbjct: 271 DVMRRRWPDEQVFTYWDYRALMFPKNMGMRIDLLLASDSLVDRVRAVWVDRQARKGTGTS 330
Query: 110 THCPLTIEYD 119
H P+ ++ D
Sbjct: 331 DHAPVIVDLD 340
>gi|85709819|ref|ZP_01040884.1| Probable exodeoxyribonuclease III [Erythrobacter sp. NAP1]
gi|85688529|gb|EAQ28533.1| Probable exodeoxyribonuclease III [Erythrobacter sp. NAP1]
Length = 272
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD 49
E L+ Q ++ +P + GDFN + + +
Sbjct: 140 MEKLRGRMAQIWESEVPAAVLGDFNVIPEDDDVFSVKAMASDALMQPESRAAYARLLADG 199
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
++ + L+ +VS R K
Sbjct: 200 WTDALRTHNPRGGVWTYWDYQAGAWQRDHGFRIDHILLSPELADRLVSVGVDREHRGREK 259
Query: 108 LSTHCPLTIEYDF 120
S H P + +F
Sbjct: 260 ASDHAPTWAKLNF 272
>gi|260597606|ref|YP_003210177.1| exonuclease III [Cronobacter turicensis z3032]
gi|260216783|emb|CBA30234.1| Exodeoxyribonuclease III [Cronobacter turicensis z3032]
Length = 268
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 32/139 (23%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + + P +I GD N + + +
Sbjct: 130 QDLQDYLETALSNDKPVLIMGDMNISPGDLDIGIGEESRKRWLRTGKCSFLPEEREWMGR 189
Query: 45 KMDPDGLLIRFPQE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
++ + R+K D + D +V
Sbjct: 190 LLNWGLKDTFRHANPDITDRYSWFDYRSKGFDDNRGLRIDLLLASDPLMARLVETGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ +
Sbjct: 250 IRAMEKPSDHAPVWATFSL 268
>gi|307130940|ref|YP_003882956.1| exonuclease III [Dickeya dadantii 3937]
gi|306528469|gb|ADM98399.1| exonuclease III [Dickeya dadantii 3937]
Length = 268
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 34/139 (24%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + +Q + P +I GD N + +
Sbjct: 130 QDLQHYLEQHHQADQPVLIMGDMNISPTDLDIGIGEDNRKRWLRTGKCSFLPEEREWMER 189
Query: 43 WQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ E ++ R+ D + D + +
Sbjct: 190 LKNWGLVDTFRAANPECQDRFSWFDYRSAGFDDNRGLRIDLIMATAPLASRCAATGIDYA 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ E+ F
Sbjct: 250 IRGMEKPSDHAPVWAEFTF 268
>gi|163739595|ref|ZP_02147004.1| exodeoxyribonuclease III [Phaeobacter gallaeciensis BS107]
gi|161387054|gb|EDQ11414.1| exodeoxyribonuclease III [Phaeobacter gallaeciensis BS107]
Length = 268
Score = 75.3 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E L++ A + +P ++AGD+N + F + M
Sbjct: 136 MERLRQRAKDLLAEEMPALMAGDYNIIPQAEDAKTPEAWKDDALHRPESRAAFQRIMALG 195
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + ++ +FL+ + + R K
Sbjct: 196 FTEAFRARHQGPGHYSFWDYQAGAWNRNNGIRIDHFLLSPQAADLLRDCQIDKDVRGRDK 255
Query: 108 LSTHCPLTIEYDF 120
S H P+ ++ D
Sbjct: 256 PSDHVPVWVDLDL 268
>gi|262395406|ref|YP_003287259.1| metal-dependent hydrolase [Vibrio sp. Ex25]
gi|262339000|gb|ACY52794.1| metal-dependent hydrolase [Vibrio sp. Ex25]
Length = 288
Score = 74.9 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 6/123 (4%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
LSQQGE L KW ++ K + + GDFN ++ D W M ++ ++
Sbjct: 169 LSQQGEALAKWMSEREKKKQQYAVMGDFNHNLSYQ--RDWLWAIMTLGNDAQLVTRDTKA 226
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ---SDLDTRRSKLSTHCPLTIEY 118
C V + + ++ + Q S D KLS HCP+
Sbjct: 227 DCKVRSNKNPRKTHQFRSL-IDHIIVSPQIKAKNAHQTLFSSQDVLDYKLSDHCPVNATV 285
Query: 119 DFE 121
Sbjct: 286 TLN 288
>gi|197285354|ref|YP_002151226.1| exodeoxyribonuclease III [Proteus mirabilis HI4320]
gi|194682841|emb|CAR43141.1| exodeoxyribonuclease III [Proteus mirabilis HI4320]
Length = 268
Score = 74.9 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 31/137 (22%), Gaps = 25/137 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+++ + P +I GD N
Sbjct: 132 LQQYLTTSLTPSSPVLIMGDLNISPTDKDIGIGENNMKRWLKMGKCSFLPEEREWLATLM 191
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
E ++ R+K D + D + + +S
Sbjct: 192 GWGLTDTYRAQHPEVEDQFSWFDYRSKGFDDNRGLRIDLLLASRCLADNCISTGIDYDIR 251
Query: 104 RRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 252 AMEKPSDHAPVWAEFKL 268
>gi|285016920|ref|YP_003374631.1| exodeoxyribonuclease III protein [Xanthomonas albilineans GPE PC73]
gi|283472138|emb|CBA14645.1| probable exodeoxyribonuclease III protein [Xanthomonas albilineans]
Length = 259
Score = 74.9 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 26/132 (19%), Gaps = 19/132 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMD 47
E + W +++ V+ GDFN +S D +
Sbjct: 124 EAVHAWLAVELQRYPRLVVLGDFNIAPDSRDVHDPLVWNDDHILTSTAERNALRKLFDLG 183
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ R + D +
Sbjct: 184 LHDGFRLHHADGGIFSWWDYRQAGFRRDLGLRIDLTLVSETLKEHTRGAGIDRTPRTWER 243
Query: 108 LSTHCPLTIEYD 119
S H P I +
Sbjct: 244 PSDHAPAWIALE 255
>gi|149185250|ref|ZP_01863567.1| hypothetical protein ED21_19392 [Erythrobacter sp. SD-21]
gi|148831361|gb|EDL49795.1| hypothetical protein ED21_19392 [Erythrobacter sp. SD-21]
Length = 265
Score = 74.9 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 30/132 (22%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------QKMDPD 49
E L+ Q +P V+ GDFN + +
Sbjct: 133 MEKLRGRMAQIWAEEVPAVVLGDFNVIPEDKDVWSPKAMASDALMQPESRDAYRRFLANG 192
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS--FSIVSYDQSDLDTRRSK 107
++ + L+ +VS R K
Sbjct: 193 WTDAIDTLNPRGGVWTYWDYQAGAWQRDHGFRIDHLLLSPETADRMVSAGVDKEYRGREK 252
Query: 108 LSTHCPLTIEYD 119
S H P+ +E
Sbjct: 253 SSDHTPVWVELR 264
>gi|323497286|ref|ZP_08102305.1| metal-dependent hydrolase [Vibrio sinaloensis DSM 21326]
gi|323317643|gb|EGA70635.1| metal-dependent hydrolase [Vibrio sinaloensis DSM 21326]
Length = 232
Score = 74.9 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L QQGE L +W ++K +VI GDFN ++ D W + Q
Sbjct: 114 ILKQQGERLNQWINEKEVANQAYVILGDFNHNLSYP--NDWLWNTLTQSNRAQLATQRTR 171
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR---RSKLSTHCPLTIE 117
+ C V R + + + + ++ + + + Q ++ + +LS HCP+T +
Sbjct: 172 AECKVRSRKQPNKTHSFRSL-IDHIIVSDQIKLSAPKQDVYPSQQVLKHQLSDHCPITAQ 230
Query: 118 Y 118
Sbjct: 231 L 231
>gi|78049826|ref|YP_366001.1| exodeoxyribonuclease III [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78038256|emb|CAJ26001.1| exodeoxyribonuclease III [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 263
Score = 74.9 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 27/130 (20%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDP 48
W Q+++ V+ GDFN ++ D +
Sbjct: 129 AAHDWIAQELQRYPQLVVLGDFNIAPDARDVHDATVWNEHHILTSTDERAALDKLLALGL 188
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
Q+ E R + D V +
Sbjct: 189 HDAFRLHNQDAEHFSWWDYRQAGFRRNLGLRIDLTLVSDALRTRAVESGIDREPRTWERP 248
Query: 109 STHCPLTIEY 118
S H P +
Sbjct: 249 SDHAPAWVRL 258
>gi|149926852|ref|ZP_01915111.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Limnobacter
sp. MED105]
gi|149824404|gb|EDM83622.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Limnobacter
sp. MED105]
Length = 266
Score = 74.9 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 29/131 (22%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ L K D + + GD+N + D M
Sbjct: 135 DALLKDCDAWLAQYPKLALVGDYNIAPDDRDVHDPKAWAGQVLCSDDERGRFNTLLDMGL 194
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q +++ R + D+ + + + K
Sbjct: 195 VDSFRLFEQPEKTFSWWDYRMLGFQKNKGLRIDHVLLSKPLAERCTASVIDRAPRKWEKP 254
Query: 109 STHCPLTIEYD 119
S H P
Sbjct: 255 SDHAPAVATLS 265
>gi|134099932|ref|YP_001105593.1| AP endonuclease [Saccharopolyspora erythraea NRRL 2338]
gi|291008673|ref|ZP_06566646.1| AP endonuclease [Saccharopolyspora erythraea NRRL 2338]
gi|133912555|emb|CAM02668.1| AP endonuclease, family 1:exodeoxyribonuclease III xth
[Saccharopolyspora erythraea NRRL 2338]
Length = 265
Score = 74.9 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 35/135 (25%), Gaps = 18/135 (13%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDP 48
+ E L+ + G F + GDFN D +
Sbjct: 131 RFLEALRDTVAAERDHGRAFAVLGDFNIAPADDDVWDISAFAESTHVTEPERSALADLRA 190
Query: 49 DGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
GL +P+ + R + + D + ++ +
Sbjct: 191 AGLADVYPRALKYDVPFTYWDYRAGAFPKNMGMRIDLAYGDPRFTGAVSDSYVDREARKG 250
Query: 106 SKLSTHCPLTIEYDF 120
S H PL I+ D
Sbjct: 251 KGASDHAPLVIDLDL 265
>gi|126725257|ref|ZP_01741099.1| exodeoxyribonuclease III [Rhodobacterales bacterium HTCC2150]
gi|126704461|gb|EBA03552.1| exodeoxyribonuclease III [Rhodobacterales bacterium HTCC2150]
Length = 259
Score = 74.9 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ A + ++ PFV+AGD+N + + ++
Sbjct: 127 MDRLQARAVELLEIEEPFVVAGDYNIIPQDEDAKHPEVWVEDALARPESRAAYRRLLNLG 186
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + + +FL + + R K
Sbjct: 187 FTEVFRTRNPGPGHYSFWDYQRGAWDKNDGIRIDHFLASPECADLVTDCQIDSYVRGREK 246
Query: 108 LSTHCPLTIEYD 119
S H P+ IE D
Sbjct: 247 PSDHVPVWIELD 258
>gi|84625943|ref|YP_453315.1| exodeoxyribonuclease III [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84369883|dbj|BAE71041.1| exodeoxyribonuclease III [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 259
Score = 74.9 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 28/130 (21%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDP 48
W Q+++T V+ GDFN ++ D +
Sbjct: 125 AAHDWIAQELQTYPQLVVLGDFNIAPDARDVHDATVWNEHHILTSTDERAALEKLLALGL 184
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
Q+ E R + D V +
Sbjct: 185 HDAFRLHTQDAEHFSWWDYRQAGFRRNLGLRIDLTLVSDALRTRAVESGIDREPRTWERP 244
Query: 109 STHCPLTIEY 118
S H P +
Sbjct: 245 SDHAPAWVRL 254
>gi|238020687|ref|ZP_04601113.1| hypothetical protein GCWU000324_00577 [Kingella oralis ATCC 51147]
gi|237867667|gb|EEP68673.1| hypothetical protein GCWU000324_00577 [Kingella oralis ATCC 51147]
Length = 255
Score = 74.9 bits (182), Expect = 3e-12, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 33/136 (24%), Gaps = 19/136 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------W 43
+Q L ++ ++ V+ GDFN D
Sbjct: 120 KRQWFAALTEYVRDQLAQHPKLVLLGDFNIAPADDDVYDPQRWHEKILCSGEERQWFANL 179
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ L R + D+ S+ S +
Sbjct: 180 LNLGLHDALRHIYPTGAHYTWWDYRGAMFAKGLGLRIDHLLISPALRDSLRSVNIDSEAR 239
Query: 104 RRSKLSTHCPLTIEYD 119
+ + S H P+ E+D
Sbjct: 240 AQERPSDHAPVVAEWD 255
>gi|239945332|ref|ZP_04697269.1| putative exonuclease [Streptomyces roseosporus NRRL 15998]
gi|239991789|ref|ZP_04712453.1| putative exonuclease [Streptomyces roseosporus NRRL 11379]
gi|291448794|ref|ZP_06588184.1| exonuclease [Streptomyces roseosporus NRRL 15998]
gi|291351741|gb|EFE78645.1| exonuclease [Streptomyces roseosporus NRRL 15998]
Length = 259
Score = 74.9 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 33/132 (25%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
E L+K +PF + GDFN D +
Sbjct: 128 EALRKAVAADAAGSLPFAVLGDFNVAPTDEDVWDPALFEGATHVTPAERAALAALEAEGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ R + + R + D + ++ + +
Sbjct: 188 SEVHPRPLKYDRAYTFWDYRELRFPKNKGMRIDLTFGNAPFTAAVKDSYVDREERKGKGA 247
Query: 109 STHCPLTIEYDF 120
S H P+ ++ D
Sbjct: 248 SDHAPVVVDLDL 259
>gi|297190955|ref|ZP_06908353.1| exonuclease [Streptomyces pristinaespiralis ATCC 25486]
gi|197721867|gb|EDY65775.1| exonuclease [Streptomyces pristinaespiralis ATCC 25486]
Length = 259
Score = 74.9 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 34/132 (25%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
E L G PF + GDFN D + +K
Sbjct: 128 EALSVAVTDDAAAGRPFAVLGDFNIAPTDDDVWDPSFFDGMTHVTPPERAALEALRKRGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + + R + D + ++ + +
Sbjct: 188 ADVVPRPLKYEHPFTYWDYRQLCFPKNRGMRIDLVYGNEPFTAAVKDSFVDREERKGKGA 247
Query: 109 STHCPLTIEYDF 120
S H P+ ++ D
Sbjct: 248 SDHAPVVVDLDM 259
>gi|255066148|ref|ZP_05318003.1| exodeoxyribonuclease III [Neisseria sicca ATCC 29256]
gi|255049693|gb|EET45157.1| exodeoxyribonuclease III [Neisseria sicca ATCC 29256]
Length = 256
Score = 74.9 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 19/139 (13%)
Query: 1 MLSQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQ 44
+ +Q L ++ ++ V+ GDFN D +++
Sbjct: 118 LYKEQWFAALTEFVRDEMTRYEKLVLLGDFNIAPADADCYDPEKWHEKIHCSSIERQWFK 177
Query: 45 KMDP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ L + E R + D++ S +
Sbjct: 178 NLLDLGLTDSLRQIHPEGAFYTWFDYRGAMFQRKLGLRIDHQLISPALSAVLKDVYVDLD 237
Query: 102 DTRRSKLSTHCPLTIEYDF 120
+ + S H P+ E+D
Sbjct: 238 ARAQERPSDHAPVVAEFDL 256
>gi|323491827|ref|ZP_08097002.1| hypothetical protein VIBR0546_11562 [Vibrio brasiliensis LMG 20546]
gi|323313962|gb|EGA67051.1| hypothetical protein VIBR0546_11562 [Vibrio brasiliensis LMG 20546]
Length = 296
Score = 74.9 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 6/121 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L QQG L W Q+ ++I GDFN + D W ++ D + +
Sbjct: 178 ILKQQGRALNGWIKQREAAKDAYIILGDFNHNMGYQ--RDWLWDEIAQDTQATLVSKSTK 235
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---SKLSTHCPLTIE 117
+ C V RN + + ++ S + Q +LS HCPL+ +
Sbjct: 236 AECKVRSRNNPRKTHQFRSL-IDHIIVSESLTASKPKQDVYPVEDVLNHQLSDHCPLSSD 294
Query: 118 Y 118
Sbjct: 295 I 295
>gi|118594091|ref|ZP_01551438.1| Exodeoxyribonuclease III:Exodeoxyribonuclease III xth
[Methylophilales bacterium HTCC2181]
gi|118439869|gb|EAV46496.1| Exodeoxyribonuclease III:Exodeoxyribonuclease III xth
[Methylophilales bacterium HTCC2181]
Length = 260
Score = 74.9 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
E W ++ GDFN I D +
Sbjct: 130 EAFNTWVKSSYGKSDHHILTGDFNIAPRDIDCHDPEAWKGNILVSQIERDLFDAIIDIGF 189
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
D ++ + R + D+ ++ + + + +
Sbjct: 190 DDSFRVLNKDIQKFSWWDYRMAGFRRNLGMRIDHILTSHSLKENLTTAYIDEDPRKLERP 249
Query: 109 STHCPLTIEYD 119
S H P+ E+
Sbjct: 250 SDHTPVITEFR 260
>gi|325927981|ref|ZP_08189202.1| Exodeoxyribonuclease III [Xanthomonas perforans 91-118]
gi|325541666|gb|EGD13187.1| Exodeoxyribonuclease III [Xanthomonas perforans 91-118]
Length = 259
Score = 74.9 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 27/130 (20%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDP 48
W Q+++ V+ GDFN ++ D +
Sbjct: 125 AAHDWIAQELQRYPQLVVLGDFNIAPDARDVHDATVWNEHHILTSTDERAALDKLLALGL 184
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
Q+ E R + D V +
Sbjct: 185 HDAFRLHNQDAEHFSWWDYRQAGFRRNLGLRIDLTLVSDALRTRAVESGIDREPRTWERP 244
Query: 109 STHCPLTIEY 118
S H P +
Sbjct: 245 SDHAPAWVRL 254
>gi|328470709|gb|EGF41620.1| hypothetical protein VP10329_07912 [Vibrio parahaemolyticus 10329]
Length = 293
Score = 74.9 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 6/123 (4%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
LSQQGE L KW ++ K + + GDFN ++ D W M ++ ++
Sbjct: 174 LSQQGEALAKWVSEREKKKEQYAVMGDFNHNLSYQ--RDWLWAIMTLGNDAQLVTRDTQA 231
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ---SDLDTRRSKLSTHCPLTIEY 118
C V S + + ++ + Q S D KLS HCP+
Sbjct: 232 DCKVRSNKNPSKTHQFRSL-IDHIIVSPQIKAKNAHQTLFSSQDVLDYKLSDHCPVNATV 290
Query: 119 DFE 121
Sbjct: 291 TLN 293
>gi|254805570|ref|YP_003083791.1| exodeoxyribonuclease III [Neisseria meningitidis alpha14]
gi|254669112|emb|CBA07713.1| exodeoxyribonuclease III [Neisseria meningitidis alpha14]
Length = 256
Score = 74.9 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 37/137 (27%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D ++Q +
Sbjct: 120 KEQWFAALTEFVRDEMARHGKLVLLGDFNIAPADADCYDPEKWYEKIHCSTVERQWFQNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L E R + D+ + ++
Sbjct: 180 LDLGLTDSLRHIHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLETR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+T E+D+
Sbjct: 240 ALERPSDHAPVTAEFDW 256
>gi|29828508|ref|NP_823142.1| exonuclease [Streptomyces avermitilis MA-4680]
gi|29605612|dbj|BAC69677.1| putative exonuclease [Streptomyces avermitilis MA-4680]
Length = 262
Score = 74.9 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
E LK PF + GDFN D ++
Sbjct: 128 EALKAAVAGDAAGSRPFAVMGDFNVAPTDDDVYDVAAFEGLTHVTPAERAALATLREAGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + + R + D + ++ + +
Sbjct: 188 SDVVPRPLKYEHPYTYWDYRQLCFPKNRGMRIDLVYGNEPFAKAVKDAYVDREERKGKGA 247
Query: 109 STHCPLTIEYD 119
S H P+ ++ D
Sbjct: 248 SDHAPVVVDLD 258
>gi|21224654|ref|NP_630433.1| exonuclease [Streptomyces coelicolor A3(2)]
gi|3367747|emb|CAA20072.1| putative exonuclease [Streptomyces coelicolor A3(2)]
Length = 259
Score = 74.5 bits (181), Expect = 4e-12, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 33/132 (25%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
E L+ + G PF + GD+N D +
Sbjct: 128 EALRAAVEGDAAGGRPFAVLGDYNVAPTDDDVYDRAAFEGATHVTPAERAALASLRGAGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + R + D + ++ + +
Sbjct: 188 SDVVPRPLKYDHPFTYWDYRQLCFPKNRGMRIDLVYGNEPFAKAVTDSYVDREERKGKGA 247
Query: 109 STHCPLTIEYDF 120
S H P+ ++ D
Sbjct: 248 SDHAPVVVDLDL 259
>gi|289666147|ref|ZP_06487728.1| exodeoxyribonuclease III [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289670759|ref|ZP_06491834.1| exodeoxyribonuclease III [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 259
Score = 74.5 bits (181), Expect = 4e-12, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 28/130 (21%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDP 48
W Q+++T V+ GDFN ++ D +
Sbjct: 125 AAHDWIAQQLQTYPQLVVLGDFNIAPDARDVHDATVWNEHHILTSTDERAALEKLLALGL 184
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
PQ E R + D V +
Sbjct: 185 HDAFRLHPQAAEQFSWWDYRQAGFRRNLGLRIDLTLVSDALRTRAVESGIDREPRTWERP 244
Query: 109 STHCPLTIEY 118
S H P +
Sbjct: 245 SDHAPAWVRL 254
>gi|156934327|ref|YP_001438243.1| exonuclease III [Cronobacter sakazakii ATCC BAA-894]
gi|156532581|gb|ABU77407.1| hypothetical protein ESA_02158 [Cronobacter sakazakii ATCC BAA-894]
Length = 268
Score = 74.5 bits (181), Expect = 4e-12, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 32/139 (23%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + + P +I GD N + + +
Sbjct: 130 QDLQDYLETALSNDKPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMGR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
++ E+ R+K D + D +
Sbjct: 190 LLNWGLKDTFRHANPETSDRYSWFDYRSKGFDDNRGLRIDLLLASDPLMARLAETGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ +
Sbjct: 250 IRAMEKPSDHAPVWATFSL 268
>gi|85375417|ref|YP_459479.1| hypothetical protein ELI_12950 [Erythrobacter litoralis HTCC2594]
gi|84788500|gb|ABC64682.1| hypothetical protein ELI_12950 [Erythrobacter litoralis HTCC2594]
Length = 262
Score = 74.5 bits (181), Expect = 4e-12, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------QKMDPD 49
E L+ + ++ P ++ GDFN + +++
Sbjct: 129 MEKLRARMRELWQSEQPTIVTGDFNVIPHDDDVWSPKAMQDDALMQPESRDAYQRQLADG 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ + L+ + + R K
Sbjct: 189 WTDAVRTLNPRGGVWTFWDYQRGAWQRDHGFRIDHCLLSPELADRLTAVGVDKDYRGREK 248
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 249 ASDHTPVWVEL 259
>gi|293395887|ref|ZP_06640169.1| exodeoxyribonuclease III [Serratia odorifera DSM 4582]
gi|291421824|gb|EFE95071.1| exodeoxyribonuclease III [Serratia odorifera DSM 4582]
Length = 268
Score = 74.5 bits (181), Expect = 4e-12, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + +Q++ P +I GD N + + +
Sbjct: 130 QDLQDYLEQQLSVENPVLIMGDMNISPSDYDIGIGEENRKRWLRTGKCSFLPEEREWMGR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
++ + E R+K D + D + V+
Sbjct: 190 LLNWGLVDTYRQANPERNDQFSWFDYRSKGFDDNRGLRIDLLLASTPLAARCVATGIDYQ 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ E+D
Sbjct: 250 TRSMEKPSDHAPVWAEFD 267
>gi|308209127|gb|ADO20908.1| exodeoxyribonuclease-2 [Saccharopolyspora spinosa]
Length = 266
Score = 74.5 bits (181), Expect = 4e-12, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ L+ +++ PF + GDFN D K
Sbjct: 134 DALRATVIEEMAADRPFAVLGDFNICPTDADVWDIAGFADSTHVRKNEGKALAALAKPGL 193
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ R + R + + D + ++ +
Sbjct: 194 ARVYRRAMKYDIPFTYWDYRALRFPNNQGMRIDLVYGNEKFTGAVTDSYVDREARKGKGT 253
Query: 109 STHCPLTIEYD 119
S H P+ ++ D
Sbjct: 254 SDHAPVVVDLD 264
>gi|296115009|ref|ZP_06833653.1| Endonuclease/exonuclease/phosphatase [Gluconacetobacter hansenii
ATCC 23769]
gi|295978471|gb|EFG85205.1| Endonuclease/exonuclease/phosphatase [Gluconacetobacter hansenii
ATCC 23769]
Length = 293
Score = 74.5 bits (181), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L +Q L W ++ G PF I GDFN + D + +G L+ S
Sbjct: 181 LYRQVAALTDWIMERQDEGEPFAIMGDFNHMLGP---GDAMLAMLGENGPLVAPTVGLAS 237
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
C +D+ V+ + +L +S +++Y + D T +S+LS HCP++I D
Sbjct: 238 PCW---GGNYFIDHIVLGDQARQWLHPDSLRVMTYREHD-PTLQSRLSDHCPVSIGLDMP 293
>gi|117928676|ref|YP_873227.1| exodeoxyribonuclease III [Acidothermus cellulolyticus 11B]
gi|117649139|gb|ABK53241.1| Exodeoxyribonuclease III [Acidothermus cellulolyticus 11B]
Length = 282
Score = 74.5 bits (181), Expect = 4e-12, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 33/120 (27%), Gaps = 18/120 (15%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEKES-- 61
+G PF++AGDFN D Q + GL FP+ +
Sbjct: 163 SGRPFIVAGDFNIAPTDRDVWDPAVFVGSTHVTDAERQALQAICDLGLRDIFPRALKYDY 222
Query: 62 -TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + D + + + S H P+ +++
Sbjct: 223 PFTYWDYRAGMFPKNQGMRIDLVLANDAAAAKVTDAYVDREARKGKGPSDHAPIVVDFAL 282
>gi|21244888|ref|NP_644470.1| exodeoxyribonuclease III [Xanthomonas axonopodis pv. citri str.
306]
gi|21110598|gb|AAM39006.1| exodeoxyribonuclease III [Xanthomonas axonopodis pv. citri str.
306]
Length = 259
Score = 74.5 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 27/130 (20%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDP 48
W Q+++ V+ GDFN ++ D +
Sbjct: 125 AAHDWIAQELQRYPQLVVLGDFNIAPDARDVHDATVWNEHHILTSTDERAALDKLLALGL 184
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
Q+ + R + D V +
Sbjct: 185 HDAFRLHNQDADHFSWWDYRQAGFRRNLGLRIDLTLVSDALRTRAVESGIDREPRTWERP 244
Query: 109 STHCPLTIEY 118
S H P +
Sbjct: 245 SDHAPAWVRL 254
>gi|28900797|ref|NP_800452.1| hypothetical protein VPA0942 [Vibrio parahaemolyticus RIMD 2210633]
gi|28809243|dbj|BAC62285.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
Length = 293
Score = 74.5 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 6/123 (4%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
LSQQGE L KW ++ K + + GDFN ++ D W M ++ ++
Sbjct: 174 LSQQGEALAKWMSEREKKKEQYAVMGDFNHNLSYQ--RDWLWAIMTLGNDAQLVTRDTQA 231
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ---SDLDTRRSKLSTHCPLTIEY 118
C V S + + ++ + Q S D KLS HCP+
Sbjct: 232 DCKVRSNKNPSKTHQFRSL-IDHIIVSPQIKAKNAHQTLFSSQDVLDYKLSDHCPVNATV 290
Query: 119 DFE 121
Sbjct: 291 TLN 293
>gi|311899750|dbj|BAJ32158.1| putative exodeoxyribonuclease III [Kitasatospora setae KM-6054]
Length = 270
Score = 74.5 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 33/133 (24%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMD 47
L+ G PF + GDFN D +++
Sbjct: 138 MAALRDAVRDDAAGGRPFAVLGDFNVAPTDEDVYDLAAFAGLTHVTAPERATLAALRELG 197
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
++ R + R + + D + ++ +
Sbjct: 198 LRDVVPRPLKYDRPYTFWDYRALAFPKNRGMRIDLTYANEPFADAVTDTYVDREARKGKG 257
Query: 108 LSTHCPLTIEYDF 120
S H P+ ++ D
Sbjct: 258 TSDHAPVVVDLDL 270
>gi|225077187|ref|ZP_03720386.1| hypothetical protein NEIFLAOT_02242 [Neisseria flavescens
NRL30031/H210]
gi|224951478|gb|EEG32687.1| hypothetical protein NEIFLAOT_02242 [Neisseria flavescens
NRL30031/H210]
Length = 256
Score = 74.5 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 35/136 (25%), Gaps = 19/136 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FW 43
+Q L ++ ++ V+ GDFN D
Sbjct: 120 KEQWFAALTEFVRTEMAVHPKLVLLGDFNIAPADADCYDPEKWHEKIHCSSIERQWFKTL 179
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ L + E R + D+ + + ++
Sbjct: 180 LDLGLTDSLRKVHPEGAFYTWFDYRGAMFQRKLGLRIDHILTSPELAATLTDVTVDLETR 239
Query: 104 RRSKLSTHCPLTIEYD 119
+ + S H P+ E+D
Sbjct: 240 AQERPSDHAPVIAEFD 255
>gi|58584173|ref|YP_203189.1| exodeoxyribonuclease III [Xanthomonas oryzae pv. oryzae KACC10331]
gi|188579169|ref|YP_001916098.1| exodeoxyribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58428767|gb|AAW77804.1| exodeoxyribonuclease III [Xanthomonas oryzae pv. oryzae KACC10331]
gi|188523621|gb|ACD61566.1| exodeoxyribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 259
Score = 74.5 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 28/130 (21%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDP 48
W Q+++T V+ GDFN ++ D M
Sbjct: 125 AAHDWIAQELQTYPQLVVLGDFNIAPDARDVHDATVWNEHHILTSTDERAALEKLLAMGL 184
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
Q+ E R + D V +
Sbjct: 185 HDAFRLHTQDAEHFSWWDYRQAGFRRNLGLRIDLTLVSDALRTRAVESGIDREPRTWERP 244
Query: 109 STHCPLTIEY 118
S H P +
Sbjct: 245 SDHAPAWVRL 254
>gi|310779700|ref|YP_003968032.1| exodeoxyribonuclease III Xth [Ilyobacter polytropus DSM 2926]
gi|309749023|gb|ADO83684.1| exodeoxyribonuclease III Xth [Ilyobacter polytropus DSM 2926]
Length = 253
Score = 74.5 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 32/128 (25%), Gaps = 22/128 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------G 50
L + + ++ G V+ GD+N I + +P
Sbjct: 129 LLDYCNSLVENGENIVLCGDYNIAHQEIDLKNPKSNTKNPGFLPEEREWMSKFLNSGYID 188
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + R K+ ++ F L S
Sbjct: 189 IFRYLYPNEIKYTWWSYRFKAREKNIGW--RIDYHCVNKDFISTIKKVEIL--DNITGSD 244
Query: 111 HCPLTIEY 118
HCP+ IE
Sbjct: 245 HCPVLIEL 252
>gi|255020178|ref|ZP_05292247.1| Exodeoxyribonuclease III [Acidithiobacillus caldus ATCC 51756]
gi|254970320|gb|EET27813.1| Exodeoxyribonuclease III [Acidithiobacillus caldus ATCC 51756]
Length = 258
Score = 74.5 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 29/130 (22%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L+++ + V+ GDFN D + +
Sbjct: 126 ALREYLRDALARWPRLVVLGDFNIAPGDGDVFDAAAWGEDILCSPAERAALTALEDLGFV 185
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R S + D + + + S
Sbjct: 186 DAYRALNPDGREFTWWDYRAASFRRNRGLRIDLILVSTALWPQVRQVLVHREERGAERPS 245
Query: 110 THCPLTIEYD 119
H P+++ +
Sbjct: 246 DHAPVSLFLE 255
>gi|144899913|emb|CAM76777.1| Endonuclease/exonuclease/phosphatase [Magnetospirillum
gryphiswaldense MSR-1]
Length = 256
Score = 74.5 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 35/132 (26%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
L + + G+PFV+ GD+N D +
Sbjct: 125 MRRLVDHSKTLLDQGMPFVLGGDYNICPTDADVYDPAGWADDALCRPESRALFRELCHLG 184
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + + D+ + +++ D R K
Sbjct: 185 LTEAFRALHPQPGLYTFWDYQAGAWPRGNGLRIDHFLLSPAAADRLIACDIDKEPRGREK 244
Query: 108 LSTHCPLTIEYD 119
S H P+ I+ +
Sbjct: 245 ASDHTPIWIDLN 256
>gi|84393951|ref|ZP_00992692.1| hypothetical protein V12B01_14350 [Vibrio splendidus 12B01]
gi|84375450|gb|EAP92356.1| hypothetical protein V12B01_14350 [Vibrio splendidus 12B01]
Length = 292
Score = 74.1 bits (180), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 6/120 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L Q + L KW Q+ + G + I GDFN ++ D W+ M + ++ +
Sbjct: 174 LKDQAKQLNKWIQQRERKGEDYAILGDFNHNLSYS--RDWMWKDMTQNTDAQLVTRKTRA 231
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ---SDLDTRRSKLSTHCPLTIEY 118
C V + + + ++ S Q D KLS HCP++
Sbjct: 232 DCKVRSNRNNHRTHQFRSV-IDHIVVSKSLDASPAKQKVFETQDVLDYKLSDHCPVSTTI 290
>gi|325145191|gb|EGC67473.1| exodeoxyribonuclease III [Neisseria meningitidis M01-240013]
Length = 256
Score = 74.1 bits (180), Expect = 5e-12, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 37/137 (27%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D ++Q +
Sbjct: 120 KEQWFAALTEFVRDEMARHGKLVLLGDFNIAPADADCYDPEKWYEKIHCSTVERQWFQNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L E R + D+ + + +
Sbjct: 180 LDLGLTDSLRHIHPEGAFYTWFDYRGAMFQRKLGLRIDHILVTSEMAAVLKDVRVDLDTR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+T E+D+
Sbjct: 240 ALERPSDHAPVTAEFDW 256
>gi|325205470|gb|ADZ00923.1| exodeoxyribonuclease III [Neisseria meningitidis M04-240196]
Length = 256
Score = 74.1 bits (180), Expect = 5e-12, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D +++ +
Sbjct: 120 KEQWFAALTEFVRDEMARHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFKNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + ++
Sbjct: 180 LDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLETR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+T E+D+
Sbjct: 240 ALERPSDHAPVTAEFDW 256
>gi|168182409|ref|ZP_02617073.1| exodeoxyribonuclease III [Clostridium botulinum Bf]
gi|182674470|gb|EDT86431.1| exodeoxyribonuclease III [Clostridium botulinum Bf]
Length = 253
Score = 74.1 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 36/130 (27%), Gaps = 22/130 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E L + D+ +K G VI GD+N N I + +
Sbjct: 127 EALFNYCDELVKEGKKLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWLDKIIERGY 186
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+K R K+ + N+ + ++
Sbjct: 187 TDTFRNMNPDKIKYSWWSYRFKARERNAGW--RIDYHFVSNNL--LDRVENTEILNEVYG 242
Query: 109 STHCPLTIEY 118
S HCP+ +E
Sbjct: 243 SDHCPIMLEL 252
>gi|260436042|ref|ZP_05790012.1| exodeoxyribonuclease III [Synechococcus sp. WH 8109]
gi|260413916|gb|EEX07212.1| exodeoxyribonuclease III [Synechococcus sp. WH 8109]
Length = 288
Score = 74.1 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 38/134 (28%), Gaps = 18/134 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD------------------PDG 50
LK++ D + + G P + GDFN + + D Q
Sbjct: 146 LKRYLDAQEQRGEPLCMVGDFNIGLEARDLPDPDRQTGGIMASDAERQALRDALGERLQD 205
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ F + R+ + D+ + S + S
Sbjct: 206 VFRVFEPDSGHWSWWDYRSGAWDRDRGWRIDHVYLCDELLGLARSCVIHKRMRGNQQPSD 265
Query: 111 HCPLTIEYDFEKGN 124
H P+++ D+ +
Sbjct: 266 HAPVSVVVDWPPTD 279
>gi|254718977|ref|ZP_05180788.1| exodeoxyribonuclease III Xth [Brucella sp. 83/13]
gi|265983967|ref|ZP_06096702.1| exodeoxyribonuclease III Xth [Brucella sp. 83/13]
gi|264662559|gb|EEZ32820.1| exodeoxyribonuclease III Xth [Brucella sp. 83/13]
Length = 260
Score = 74.1 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N + + F + +
Sbjct: 128 MQRLENWAKERLTLEEPLVLAGDYNVIPEPVDARNPQAWLGDALFQPQSRQAFRRLENLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
ES ++ + ++ +S + K
Sbjct: 188 FTDAIRASTDESGVYSFWDYQAGAWQKNNGIRIDHLMLSPEATNRFISANIEKHVRAWEK 247
Query: 108 LSTHCPLTIEY 118
S H P+T+
Sbjct: 248 PSDHVPVTVTL 258
>gi|271500687|ref|YP_003333712.1| exodeoxyribonuclease III [Dickeya dadantii Ech586]
gi|270344242|gb|ACZ77007.1| exodeoxyribonuclease III [Dickeya dadantii Ech586]
Length = 268
Score = 74.1 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 33/139 (23%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + +Q + P +I GD N + +
Sbjct: 130 QDLQHYLEQHHQADQPVLIMGDMNISPTDLDIGIGEDNRKRWLRTGKCSFLPEEREWMER 189
Query: 43 WQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ E ++ R+ D + D + +
Sbjct: 190 LKNWGLVDTFRAANPECQDKFSWFDYRSSGFDDNRGLRIDLIMATSPLASRCTATGIDYA 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 250 IRGMEKPSDHAPVWAEFTL 268
>gi|260365700|ref|ZP_05778214.1| metal-dependent hydrolase [Vibrio parahaemolyticus K5030]
gi|260896112|ref|ZP_05904608.1| metal-dependent hydrolase [Vibrio parahaemolyticus Peru-466]
gi|308094717|ref|ZP_05891469.2| metal-dependent hydrolase [Vibrio parahaemolyticus AN-5034]
gi|308126490|ref|ZP_05910491.2| metal-dependent hydrolase [Vibrio parahaemolyticus AQ4037]
gi|308088090|gb|EFO37785.1| metal-dependent hydrolase [Vibrio parahaemolyticus Peru-466]
gi|308090251|gb|EFO39946.1| metal-dependent hydrolase [Vibrio parahaemolyticus AN-5034]
gi|308109923|gb|EFO47463.1| metal-dependent hydrolase [Vibrio parahaemolyticus AQ4037]
gi|308111792|gb|EFO49332.1| metal-dependent hydrolase [Vibrio parahaemolyticus K5030]
Length = 288
Score = 74.1 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 6/123 (4%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
LSQQGE L KW ++ K + + GDFN ++ D W M ++ ++
Sbjct: 169 LSQQGEALAKWMSEREKKKEQYAVMGDFNHNLSYQ--RDWLWAIMTLGNDAQLVTRDTQA 226
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ---SDLDTRRSKLSTHCPLTIEY 118
C V S + + ++ + Q S D KLS HCP+
Sbjct: 227 DCKVRSNKNPSKTHQFRSL-IDHIIVSPQIKAKNAHQTLFSSQDVLDYKLSDHCPVNATV 285
Query: 119 DFE 121
Sbjct: 286 TLN 288
>gi|154253458|ref|YP_001414282.1| exodeoxyribonuclease III Xth [Parvibaculum lavamentivorans DS-1]
gi|154157408|gb|ABS64625.1| exodeoxyribonuclease III Xth [Parvibaculum lavamentivorans DS-1]
Length = 261
Score = 74.1 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L A + + P V+AGD+N + F + ++
Sbjct: 128 MDRLIDHARELLSYEEPLVLAGDYNVIPTIDDVHNPAAWVNDALFRPETRAKFRELINLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+E+ ++ + L+ + + + D R K
Sbjct: 188 LTDAFRACHREAHRYTFWDYQAGAWAKDNGIRIDHLLLSPQAADLLKASDIDRAVRGREK 247
Query: 108 LSTHCPLTIEYDF 120
S H P+ +E D
Sbjct: 248 PSDHVPIWVELDL 260
>gi|324007120|gb|EGB76339.1| exodeoxyribonuclease III [Escherichia coli MS 57-2]
Length = 272
Score = 74.1 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 134 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 193
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 194 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 254 IRSMEKPSDHAPVWATFR 271
>gi|218548682|ref|YP_002382473.1| exonuclease III [Escherichia fergusonii ATCC 35469]
gi|218356223|emb|CAQ88840.1| exonuclease III [Escherichia fergusonii ATCC 35469]
gi|324113497|gb|EGC07472.1| exodeoxyribonuclease III [Escherichia fergusonii B253]
Length = 268
Score = 74.1 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|56697356|ref|YP_167724.1| exodeoxyribonuclease III [Ruegeria pomeroyi DSS-3]
gi|56679093|gb|AAV95759.1| exodeoxyribonuclease III [Ruegeria pomeroyi DSS-3]
Length = 268
Score = 74.1 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E L+ A + + P ++AGD+N + F + ++
Sbjct: 136 MERLQARATELMAAEEPALMAGDYNIIPQAEDAKRPEAWREDALFRPESRAAFRRILNLG 195
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + ++ +FL+ + + R K
Sbjct: 196 FTEAFRARVQGPGHYSFWDYQAGAWNRNDGIRIDHFLLTPQAADLMRDCGIDKEVRGRDK 255
Query: 108 LSTHCPLTIEYD 119
S H P+ +E D
Sbjct: 256 PSDHVPVWVELD 267
>gi|237794818|ref|YP_002862370.1| exodeoxyribonuclease III [Clostridium botulinum Ba4 str. 657]
gi|229261060|gb|ACQ52093.1| exodeoxyribonuclease III [Clostridium botulinum Ba4 str. 657]
Length = 253
Score = 74.1 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 36/130 (27%), Gaps = 22/130 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E L + D+ +K G VI GD+N N I + +
Sbjct: 127 EALFNYCDELVKEGKKLVICGDYNTAHNEIDLKNPKANEKTSGFLRIERDWLDKIIERGY 186
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+K R K+ + N+ + ++
Sbjct: 187 TDTFRNMNPDKIKYSWWSYRFKARERNAGW--RIDYHFVSNNL--LDRVENTEILNEVYG 242
Query: 109 STHCPLTIEY 118
S HCP+ +E
Sbjct: 243 SDHCPIMLEL 252
>gi|149190193|ref|ZP_01868468.1| hypothetical protein VSAK1_14887 [Vibrio shilonii AK1]
gi|148835940|gb|EDL52902.1| hypothetical protein VSAK1_14887 [Vibrio shilonii AK1]
Length = 301
Score = 74.1 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L +QG+ + W Q + +++ GDFN + GD D Q+ ++
Sbjct: 181 LKKQGKVINSWLKQVEQQNELYIVLGDFNHNLAYSGDWLWKTITNGLDTAPRLTSQQTKA 240
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---SKLSTHCPLTIEY 118
TC V R + + + ++ QS + ++S HCPL+IE
Sbjct: 241 TCKVKSRKNNDKIHQFRSL-IDHIIVSPELRTSPAVQSLMPVEDVLKHQMSDHCPLSIEL 299
>gi|121635466|ref|YP_975711.1| exodeoxyribonuclease III [Neisseria meningitidis FAM18]
gi|120867172|emb|CAM10939.1| exodeoxyribonuclease III [Neisseria meningitidis FAM18]
gi|325132946|gb|EGC55623.1| exodeoxyribonuclease III [Neisseria meningitidis M6190]
gi|325138934|gb|EGC61484.1| exodeoxyribonuclease III [Neisseria meningitidis ES14902]
gi|325142997|gb|EGC65353.1| exodeoxyribonuclease III [Neisseria meningitidis 961-5945]
gi|325198917|gb|ADY94373.1| exodeoxyribonuclease III [Neisseria meningitidis G2136]
Length = 256
Score = 74.1 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 37/137 (27%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D ++Q +
Sbjct: 120 KEQWFAALTEFVRDEMARHGKLVLLGDFNIAPADADCYDPEKWYEKIHCSTVERQWFQNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L E R + D+ + + +
Sbjct: 180 LDLGLTDSLRHIHPEGAFYTWFDYRGAMFQRKLGLRIDHILVTSEMAAVLKDVRVDLDTR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+T E+D+
Sbjct: 240 ALERPSDHAPVTAEFDW 256
>gi|17987376|ref|NP_540010.1| exodeoxyribonuclease III [Brucella melitensis bv. 1 str. 16M]
gi|17983063|gb|AAL52274.1| exodeoxyribonuclease iii [Brucella melitensis bv. 1 str. 16M]
Length = 296
Score = 74.1 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N + + F + +
Sbjct: 164 MQRLENWAKKRLTLEEPLVLAGDYNVIPEPVDARNPQAWLGDALFQPQSRQAFRRLENLG 223
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
ES ++ + ++ +S + K
Sbjct: 224 FTDAIRASTDESGVYSFWDYQAGAWQKNNGIRIDHLMLSPEATNRFISANIEKHVRAWEK 283
Query: 108 LSTHCPLTIEY 118
S H P+T+
Sbjct: 284 PSDHVPVTVTL 294
>gi|209885397|ref|YP_002289254.1| exodeoxyribonuclease III [Oligotropha carboxidovorans OM5]
gi|209873593|gb|ACI93389.1| exodeoxyribonuclease III [Oligotropha carboxidovorans OM5]
Length = 260
Score = 74.1 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L +A ++IK+ PFV+AGDFN + F ++
Sbjct: 128 MDRLITYARERIKSEEPFVLAGDFNVIPTPADVYNPQAWLGDALFLPQTRDKFQTLLNLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQSDLDTRRSK 107
++ + L+ + + + K
Sbjct: 188 LTDALRATTDAPQQYTFWDYQAGAWQKNNGIRIDHLLMSPPAADRLQAVGIDKHVRGWEK 247
Query: 108 LSTHCPLTIEYDF 120
S H P+ + DF
Sbjct: 248 ASDHVPVWADLDF 260
>gi|237815303|ref|ZP_04594301.1| exodeoxyribonuclease III (xth) [Brucella abortus str. 2308 A]
gi|237790140|gb|EEP64350.1| exodeoxyribonuclease III (xth) [Brucella abortus str. 2308 A]
Length = 284
Score = 73.7 bits (179), Expect = 7e-12, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N + + F + +
Sbjct: 152 MQRLENWAKKRLTLEEPLVLAGDYNVIPEPVDARNPQAWLGDALFQPQSRQAFRRLENLG 211
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
ES ++ + ++ +S + K
Sbjct: 212 FTDAIRASTDESGVYSFWDYQAGAWQKNNGIRIDHLMLSPEATNRFISANIEKHVRAWEK 271
Query: 108 LSTHCPLTIEY 118
S H P+T+
Sbjct: 272 PSDHVPVTVTL 282
>gi|183599301|ref|ZP_02960794.1| hypothetical protein PROSTU_02765 [Providencia stuartii ATCC 25827]
gi|188021535|gb|EDU59575.1| hypothetical protein PROSTU_02765 [Providencia stuartii ATCC 25827]
Length = 271
Score = 73.7 bits (179), Expect = 7e-12, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 34/142 (23%), Gaps = 25/142 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + +I GD N + +
Sbjct: 130 QDLQDYITSTQTPQSQLLIMGDMNISPTDLDIGIGEANRKRWLKTGKCSFLPEERAWMER 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
++ + + R+K D + D S V+
Sbjct: 190 LLNWGLVDTYRAMNPDVDDCYSWFDYRSKGFDDNRGLRIDLLLASTALSTRCVATGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYDFEKG 123
K S H P+ E+D KG
Sbjct: 250 IRGMEKPSDHAPVWAEFDLTKG 271
>gi|189024059|ref|YP_001934827.1| Exodeoxyribonuclease III [Brucella abortus S19]
gi|297248222|ref|ZP_06931940.1| exodeoxyribonuclease III [Brucella abortus bv. 5 str. B3196]
gi|189019631|gb|ACD72353.1| Exodeoxyribonuclease III [Brucella abortus S19]
gi|297175391|gb|EFH34738.1| exodeoxyribonuclease III [Brucella abortus bv. 5 str. B3196]
Length = 296
Score = 73.7 bits (179), Expect = 7e-12, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N + + F + +
Sbjct: 164 MQRLENWAKKRLTLEEPLVLAGDYNVIPEPVDARNPQAWLGDALFQPQSRQAFRRLENLG 223
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
ES ++ + ++ +S + K
Sbjct: 224 FTDAIRASTDESGVYSFWDYQAGAWQKNNGIRIDHLMLSPEATNRFISANIEKHVRAWEK 283
Query: 108 LSTHCPLTIEY 118
S H P+T+
Sbjct: 284 PSDHVPVTVTL 294
>gi|110641869|ref|YP_669599.1| exonuclease III [Escherichia coli 536]
gi|300987545|ref|ZP_07178252.1| exodeoxyribonuclease III [Escherichia coli MS 200-1]
gi|110343461|gb|ABG69698.1| exodeoxyribonuclease III [Escherichia coli 536]
gi|300306115|gb|EFJ60635.1| exodeoxyribonuclease III [Escherichia coli MS 200-1]
gi|324011528|gb|EGB80747.1| exodeoxyribonuclease III [Escherichia coli MS 60-1]
Length = 272
Score = 73.7 bits (179), Expect = 7e-12, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 134 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 193
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 194 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 254 IRSMEKPSDHAPVWATFR 271
>gi|75676002|ref|YP_318423.1| exodeoxyribonuclease III xth [Nitrobacter winogradskyi Nb-255]
gi|74420872|gb|ABA05071.1| Exodeoxyribonuclease III [Nitrobacter winogradskyi Nb-255]
Length = 266
Score = 73.7 bits (179), Expect = 7e-12, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 18/134 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDGL 51
L +++ +++K+ F++AGDFN + F +
Sbjct: 130 RLIEYSRERLKSEEAFILAGDFNVIPAPCDVYNSAAWVDDALFRPRTRQAFQTLLGLGLT 189
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQSDLDTRRSKLS 109
+ ++ + L+ S + K S
Sbjct: 190 DALRAVSDAAGEYTFWDYQAGAWQKNNGLRIDHLLLSPQASDRLSGAGIDRHVRGWEKAS 249
Query: 110 THCPLTIEYDFEKG 123
H P+ I+ D E
Sbjct: 250 DHVPVWIDLDLETA 263
>gi|59801894|ref|YP_208606.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae FA 1090]
gi|59718789|gb|AAW90194.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae FA 1090]
Length = 256
Score = 73.7 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 36/137 (26%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D ++Q +
Sbjct: 120 KEQWFAALTEFVRDEMSRHGKLVLLGDFNIAPADADCYDPEKWYEKIHCSSVERQWFQNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + + +
Sbjct: 180 LDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVTSEMAAVLKDVRIDLETR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+ E+D
Sbjct: 240 ALERPSDHAPVAAEFDL 256
>gi|163741419|ref|ZP_02148810.1| exodeoxyribonuclease III [Phaeobacter gallaeciensis 2.10]
gi|161385153|gb|EDQ09531.1| exodeoxyribonuclease III [Phaeobacter gallaeciensis 2.10]
Length = 268
Score = 73.7 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E L++ A + +P ++AGD+N + F + +
Sbjct: 136 MERLRQRAKDLLAEEMPALMAGDYNIIPQAEDAKTPDAWKDDALHRPESRAAFQRIVALG 195
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + ++ +FL+ + + R K
Sbjct: 196 FTEAFRARHQGPGHYSFWDYQAGAWNRNNGIRIDHFLLSPQAADLLRDCQIDKDVRGRDK 255
Query: 108 LSTHCPLTIEYDF 120
S H P+ ++ D
Sbjct: 256 PSDHVPVWVDLDL 268
>gi|146311351|ref|YP_001176425.1| exonuclease III [Enterobacter sp. 638]
gi|145318227|gb|ABP60374.1| Exodeoxyribonuclease III [Enterobacter sp. 638]
Length = 268
Score = 73.7 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 31/139 (22%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + ++ P +I GD N +
Sbjct: 130 QDLQDYLTTELNKENPVLIMGDVNISPTDLDIGIGEDSRKRWLRTGKCSFLPEEREWMQR 189
Query: 43 WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q + + R+K D + D + +
Sbjct: 190 LQSWGLVDTFRAANPDTQDRFSWFDYRSKGFDDNRGLRIDLLLASAPLAERCIETGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ ++
Sbjct: 250 IRGMEKPSDHAPVWAKFKL 268
>gi|240113324|ref|ZP_04727814.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae MS11]
gi|260439854|ref|ZP_05793670.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae DGI2]
gi|268599400|ref|ZP_06133567.1| exodeoxyribonuclease III [Neisseria gonorrhoeae MS11]
gi|291043128|ref|ZP_06568851.1| exodeoxyribonuclease III [Neisseria gonorrhoeae DGI2]
gi|268583531|gb|EEZ48207.1| exodeoxyribonuclease III [Neisseria gonorrhoeae MS11]
gi|291012734|gb|EFE04717.1| exodeoxyribonuclease III [Neisseria gonorrhoeae DGI2]
Length = 256
Score = 73.7 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 36/137 (26%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D ++Q +
Sbjct: 120 KEQWFAALTEFVRDEMSRHGKLVLLGDFNIAPADADCYDPEKWYEKIHCSSVERQWFQNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + + +
Sbjct: 180 LDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVTSEMAAVLKDVRIDLETR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+ E+D
Sbjct: 240 ALERPSDHAPVAAEFDL 256
>gi|300784682|ref|YP_003764973.1| exodeoxyribonuclease III [Amycolatopsis mediterranei U32]
gi|299794196|gb|ADJ44571.1| exodeoxyribonuclease III [Amycolatopsis mediterranei U32]
Length = 258
Score = 73.7 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 19/130 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDG 50
L ++ G PF + GDFN D + +
Sbjct: 130 LHSLVASEVSDG-PFAVLGDFNVAPTDADVWDIAVFAESTHVTKPEREALARLRDLGLSD 188
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ R + R + + + D + ++ + S
Sbjct: 189 VFPRPLKYDHPFTYWDYRAGNFPNNKGMRIDLVYGNEAFTSAVTDSYVDRNARKGKGPSD 248
Query: 111 HCPLTIEYDF 120
H P+ ++ D
Sbjct: 249 HAPIVVDLDL 258
>gi|110634038|ref|YP_674246.1| exodeoxyribonuclease III [Mesorhizobium sp. BNC1]
gi|110285022|gb|ABG63081.1| Exodeoxyribonuclease III [Chelativorans sp. BNC1]
Length = 262
Score = 73.7 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 35/132 (26%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N + F + +
Sbjct: 128 MDRLELWAKRRLMLEEPLVLAGDYNVIPEPADAKNPENWLGDALYQPESRQAFRRLCNLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
E ++ + ++ I S K
Sbjct: 188 FTDALRSATNEPGTYTFWDYQAGAWQKNNGIRIDHLMLSPEAADRIASASVQKHTRAWEK 247
Query: 108 LSTHCPLTIEYD 119
S H P+ ++
Sbjct: 248 PSDHVPVVVDLR 259
>gi|331673295|ref|ZP_08374063.1| exodeoxyribonuclease III [Escherichia coli TA280]
gi|331069493|gb|EGI40880.1| exodeoxyribonuclease III [Escherichia coli TA280]
Length = 272
Score = 73.7 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 134 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 193
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 194 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 254 IRSMEKPSDHAPVWATFR 271
>gi|296102796|ref|YP_003612942.1| exonuclease III [Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295057255|gb|ADF61993.1| exonuclease III [Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 268
Score = 73.7 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 34/139 (24%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + ++K P +I GD N + + +
Sbjct: 130 QDLQDYLTTELKKENPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPD--GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + + R+K D + D + +
Sbjct: 190 LLSWGLVDTFRTANPDTQDRFSWFDYRSKGFDDNRGLRIDLLLASSPLAERCIETGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ ++
Sbjct: 250 IRSMEKPSDHAPVWAKFKL 268
>gi|300917685|ref|ZP_07134334.1| exodeoxyribonuclease III [Escherichia coli MS 115-1]
gi|300415086|gb|EFJ98396.1| exodeoxyribonuclease III [Escherichia coli MS 115-1]
Length = 272
Score = 73.7 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 134 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 193
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 194 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 254 IRSMEKPSDHAPVWATFR 271
>gi|300898982|ref|ZP_07117271.1| exodeoxyribonuclease III [Escherichia coli MS 198-1]
gi|300357379|gb|EFJ73249.1| exodeoxyribonuclease III [Escherichia coli MS 198-1]
Length = 272
Score = 73.7 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 134 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 193
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 194 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 254 IRSMEKPSDHAPVWATFR 271
>gi|194433512|ref|ZP_03065790.1| exodeoxyribonuclease III [Shigella dysenteriae 1012]
gi|194418275|gb|EDX34366.1| exodeoxyribonuclease III [Shigella dysenteriae 1012]
gi|320181218|gb|EFW56137.1| Exodeoxyribonuclease III [Shigella boydii ATCC 9905]
gi|332085670|gb|EGI90834.1| exodeoxyribonuclease III [Shigella dysenteriae 155-74]
gi|332090564|gb|EGI95661.1| exodeoxyribonuclease III [Shigella boydii 5216-82]
Length = 268
Score = 73.7 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLEAELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|191171643|ref|ZP_03033190.1| exodeoxyribonuclease III [Escherichia coli F11]
gi|190907973|gb|EDV67565.1| exodeoxyribonuclease III [Escherichia coli F11]
Length = 268
Score = 73.7 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|304384068|ref|ZP_07366522.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
gi|304334784|gb|EFM01060.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
Length = 250
Score = 73.7 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 34/142 (23%), Gaps = 27/142 (19%)
Query: 2 LSQQG---EWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQK----------- 45
L + +W + + +K+ P +I GD N I + +
Sbjct: 113 LKRLAYRMQWEEDFLQYIKKLDAKKPVIICGDMNVAHEEIDIKNPKTNRHNAGFTDEERN 172
Query: 46 -------MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
E+ R ++ D I+
Sbjct: 173 KFTTLLSEGFTDTFRYKYPEQVRYSWWSYRFQARAKNAGWRIDYFVVSNRLKPQIIDAKI 232
Query: 99 SDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ +E +
Sbjct: 233 HTAILG----SDHCPVEVELNL 250
>gi|89069305|ref|ZP_01156668.1| probable exonuclease [Oceanicola granulosus HTCC2516]
gi|89045181|gb|EAR51249.1| probable exonuclease [Oceanicola granulosus HTCC2516]
Length = 255
Score = 73.7 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 38/130 (29%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
+ L A + G+P V+AGD+N D ++ + G
Sbjct: 126 DRLVAHAADLLAAGVPAVLAGDYNIVPEPRDIYDTTSYDGSSLVQPEMRARYRSLLDAGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
E + R + + D+ + +V+ R +
Sbjct: 186 TDAVRALRPEGTAYTFWDYRRRRFERDGGLRLDHLLLSPPAAERLVAIGIDREARAREEA 245
Query: 109 STHCPLTIEY 118
S H P+ +E
Sbjct: 246 SDHAPVWVEL 255
>gi|239983300|ref|ZP_04705824.1| exonuclease [Streptomyces albus J1074]
gi|291455127|ref|ZP_06594517.1| exonuclease [Streptomyces albus J1074]
gi|291358076|gb|EFE84978.1| exonuclease [Streptomyces albus J1074]
Length = 259
Score = 73.7 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 32/130 (24%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ L+ G PF + GD+N + D +
Sbjct: 128 KALRDAVADDAAGGRPFAVLGDYNIAPHDTDVWDPTAFIGATHVTPEEREALAALRATGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
D ++ R + + R + D ++ + +
Sbjct: 188 DDVVPRPLKYDQPFTYWDYRQLGFPKNRGMRIDLVYGNDPFRAAVSDAYVDREERKGKGA 247
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 248 SDHAPVVTDL 257
>gi|194099379|ref|YP_002002479.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae NCCP11945]
gi|240014802|ref|ZP_04721715.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae DGI18]
gi|240116328|ref|ZP_04730390.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae PID18]
gi|240121325|ref|ZP_04734287.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae PID24-1]
gi|268601995|ref|ZP_06136162.1| exodeoxyribonuclease III [Neisseria gonorrhoeae PID18]
gi|193934669|gb|ACF30493.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae NCCP11945]
gi|268586126|gb|EEZ50802.1| exodeoxyribonuclease III [Neisseria gonorrhoeae PID18]
Length = 256
Score = 73.7 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 36/137 (26%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D ++Q +
Sbjct: 120 KEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWYEKIHCSSVERQWFQNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + + +
Sbjct: 180 LDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVTSEMAAVLKDVRIDLETR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+ E+D
Sbjct: 240 ALERPSDHAPVAAEFDL 256
>gi|218768830|ref|YP_002343342.1| exodeoxyribonuclease III [Neisseria meningitidis Z2491]
gi|121052838|emb|CAM09187.1| exodeoxyribonuclease III [Neisseria meningitidis Z2491]
Length = 256
Score = 73.7 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D ++Q +
Sbjct: 120 KEQWFAALTEFVRDEMARHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFQNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + ++
Sbjct: 180 LDLGLADSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAEALKDVRVDLETR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+T E+D+
Sbjct: 240 ALERPSDHAPVTAEFDW 256
>gi|295096134|emb|CBK85224.1| Exodeoxyribonuclease III [Enterobacter cloacae subsp. cloacae NCTC
9394]
Length = 268
Score = 73.7 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 33/139 (23%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + ++K P +I GD N + + +
Sbjct: 130 QDLQNYLTTELKKENPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + + R+K D + D + +
Sbjct: 190 LLGWGLVDTFRTANPATQDRFSWFDYRSKGFDDNRGLRIDLLLASAPLAERCIETGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFKL 268
>gi|239999627|ref|ZP_04719551.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae 35/02]
gi|240017251|ref|ZP_04723791.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae FA6140]
gi|240081112|ref|ZP_04725655.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae FA19]
gi|240118615|ref|ZP_04732677.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae PID1]
gi|240124158|ref|ZP_04737114.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae PID332]
gi|240126225|ref|ZP_04739111.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae SK-92-679]
gi|240128828|ref|ZP_04741489.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae
SK-93-1035]
gi|254494342|ref|ZP_05107513.1| exodeoxyribonuclease III [Neisseria gonorrhoeae 1291]
gi|268595439|ref|ZP_06129606.1| exodeoxyribonuclease III [Neisseria gonorrhoeae 35/02]
gi|268597223|ref|ZP_06131390.1| exodeoxyribonuclease III [Neisseria gonorrhoeae FA19]
gi|268604327|ref|ZP_06138494.1| exodeoxyribonuclease III [Neisseria gonorrhoeae PID1]
gi|268682783|ref|ZP_06149645.1| exodeoxyribonuclease III [Neisseria gonorrhoeae PID332]
gi|268684808|ref|ZP_06151670.1| exodeoxyribonuclease III [Neisseria gonorrhoeae SK-92-679]
gi|268687210|ref|ZP_06154072.1| exodeoxyribonuclease III [Neisseria gonorrhoeae SK-93-1035]
gi|293398467|ref|ZP_06642645.1| exodeoxyribonuclease III [Neisseria gonorrhoeae F62]
gi|226513382|gb|EEH62727.1| exodeoxyribonuclease III [Neisseria gonorrhoeae 1291]
gi|268548828|gb|EEZ44246.1| exodeoxyribonuclease III [Neisseria gonorrhoeae 35/02]
gi|268551011|gb|EEZ46030.1| exodeoxyribonuclease III [Neisseria gonorrhoeae FA19]
gi|268588458|gb|EEZ53134.1| exodeoxyribonuclease III [Neisseria gonorrhoeae PID1]
gi|268623067|gb|EEZ55467.1| exodeoxyribonuclease III [Neisseria gonorrhoeae PID332]
gi|268625092|gb|EEZ57492.1| exodeoxyribonuclease III [Neisseria gonorrhoeae SK-92-679]
gi|268627494|gb|EEZ59894.1| exodeoxyribonuclease III [Neisseria gonorrhoeae SK-93-1035]
gi|291610938|gb|EFF40035.1| exodeoxyribonuclease III [Neisseria gonorrhoeae F62]
gi|317164881|gb|ADV08422.1| putative exodeoxyribonuclease III [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 256
Score = 73.7 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 36/137 (26%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D ++Q +
Sbjct: 120 KEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWYEKIHCSSVERQWFQNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + + +
Sbjct: 180 LDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVTSEMAAVLKDVRIDLETR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+ E+D
Sbjct: 240 ALERPSDHAPVAAEFDL 256
>gi|293415066|ref|ZP_06657709.1| exodeoxyribonuclease III [Escherichia coli B185]
gi|291432714|gb|EFF05693.1| exodeoxyribonuclease III [Escherichia coli B185]
Length = 268
Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRHANPQTAERFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|15802160|ref|NP_288182.1| exonuclease III [Escherichia coli O157:H7 EDL933]
gi|15831709|ref|NP_310482.1| exonuclease III [Escherichia coli O157:H7 str. Sakai]
gi|168749430|ref|ZP_02774452.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4113]
gi|168756758|ref|ZP_02781765.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4401]
gi|168762180|ref|ZP_02787187.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4501]
gi|168770517|ref|ZP_02795524.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4486]
gi|168774945|ref|ZP_02799952.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4196]
gi|168782171|ref|ZP_02807178.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4076]
gi|168788152|ref|ZP_02813159.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC869]
gi|168800064|ref|ZP_02825071.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC508]
gi|195937435|ref|ZP_03082817.1| exonuclease III [Escherichia coli O157:H7 str. EC4024]
gi|208810770|ref|ZP_03252646.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4206]
gi|208816750|ref|ZP_03257870.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4045]
gi|208821646|ref|ZP_03261966.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4042]
gi|209395934|ref|YP_002270819.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4115]
gi|217328604|ref|ZP_03444685.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. TW14588]
gi|254793367|ref|YP_003078204.1| exonuclease III [Escherichia coli O157:H7 str. TW14359]
gi|261227757|ref|ZP_05942038.1| exonuclease III [Escherichia coli O157:H7 str. FRIK2000]
gi|261258078|ref|ZP_05950611.1| exonuclease III [Escherichia coli O157:H7 str. FRIK966]
gi|291282928|ref|YP_003499746.1| Exodeoxyribonuclease III [Escherichia coli O55:H7 str. CB9615]
gi|12515771|gb|AAG56735.1|AE005398_1 exonuclease III [Escherichia coli O157:H7 str. EDL933]
gi|13361922|dbj|BAB35878.1| exonuclease III [Escherichia coli O157:H7 str. Sakai]
gi|187769420|gb|EDU33264.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4196]
gi|188016211|gb|EDU54333.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4113]
gi|189000291|gb|EDU69277.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4076]
gi|189356216|gb|EDU74635.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4401]
gi|189360591|gb|EDU79010.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4486]
gi|189367497|gb|EDU85913.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4501]
gi|189372068|gb|EDU90484.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC869]
gi|189377552|gb|EDU95968.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC508]
gi|208725286|gb|EDZ74993.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4206]
gi|208731093|gb|EDZ79782.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4045]
gi|208741769|gb|EDZ89451.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4042]
gi|209157334|gb|ACI34767.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC4115]
gi|209768548|gb|ACI82586.1| exonuclease III [Escherichia coli]
gi|209768550|gb|ACI82587.1| exonuclease III [Escherichia coli]
gi|209768552|gb|ACI82588.1| exonuclease III [Escherichia coli]
gi|209768554|gb|ACI82589.1| exonuclease III [Escherichia coli]
gi|209768556|gb|ACI82590.1| exonuclease III [Escherichia coli]
gi|217317951|gb|EEC26378.1| exodeoxyribonuclease III [Escherichia coli O157:H7 str. TW14588]
gi|254592767|gb|ACT72128.1| exonuclease III [Escherichia coli O157:H7 str. TW14359]
gi|290762801|gb|ADD56762.1| Exodeoxyribonuclease III [Escherichia coli O55:H7 str. CB9615]
gi|320188437|gb|EFW63099.1| Exodeoxyribonuclease III [Escherichia coli O157:H7 str. EC1212]
gi|320641598|gb|EFX10986.1| exonuclease III [Escherichia coli O157:H7 str. G5101]
gi|320646958|gb|EFX15791.1| exonuclease III [Escherichia coli O157:H- str. 493-89]
gi|320652240|gb|EFX20538.1| exonuclease III [Escherichia coli O157:H- str. H 2687]
gi|320657841|gb|EFX25603.1| exonuclease III [Escherichia coli O55:H7 str. 3256-97 TW 07815]
gi|320658415|gb|EFX26109.1| exonuclease III [Escherichia coli O55:H7 str. USDA 5905]
gi|320668313|gb|EFX35140.1| exonuclease III [Escherichia coli O157:H7 str. LSU-61]
gi|326342117|gb|EGD65898.1| Exodeoxyribonuclease III [Escherichia coli O157:H7 str. 1044]
gi|326343669|gb|EGD67431.1| Exodeoxyribonuclease III [Escherichia coli O157:H7 str. 1125]
Length = 268
Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|261343612|ref|ZP_05971257.1| exodeoxyribonuclease III [Providencia rustigianii DSM 4541]
gi|282567993|gb|EFB73528.1| exodeoxyribonuclease III [Providencia rustigianii DSM 4541]
Length = 271
Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 35/142 (24%), Gaps = 25/142 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + +I GD N + + +
Sbjct: 130 QDLQDYVTSTQTPESQLLIMGDMNISPTDLDIGIGEVNRKRWLKTGKCSFLPEEREWLAR 189
Query: 45 KMDPDGLLIRFPQE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+D + Q +S R+K D + D + +
Sbjct: 190 LLDWGLVDTYREQHPDTTDSYSWFDYRSKGFDDNRGLRIDLLLASKKLASRCTATGIDLE 249
Query: 102 DTRRSKLSTHCPLTIEYDFEKG 123
K S H P+ E+D K
Sbjct: 250 IRGMEKPSDHAPVWAEFDLTKA 271
>gi|254693606|ref|ZP_05155434.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 3 str. Tulya]
gi|261213872|ref|ZP_05928153.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 3 str. Tulya]
gi|260915479|gb|EEX82340.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 3 str. Tulya]
Length = 260
Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N + + F + +
Sbjct: 128 MQRLENWAKKRLTLEEPLVLAGDYNVIPEPVDARNPQAWLGDALFQPQSRQAFRRLENLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
ES ++ + ++ +S + K
Sbjct: 188 FTDAIRASTDESGVYSFWDYQAGAWQKNNGIRIDHLMLSPEATNRFISANIEKHVRAWEK 247
Query: 108 LSTHCPLTIEY 118
S H P+T+
Sbjct: 248 PSDHVPVTVTL 258
>gi|313667795|ref|YP_004048079.1| exodeoxyribonuclease III [Neisseria lactamica ST-640]
gi|313005257|emb|CBN86690.1| exodeoxyribonuclease III [Neisseria lactamica 020-06]
Length = 256
Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D +++ +
Sbjct: 120 KEQWFAALTEFVRDEMTRYGKLVLLGDFNIAPADADCYDPEKWYEKIHCSSVERQWFKNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + ++
Sbjct: 180 LDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAEALKDVRVDLDTR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+T E+D
Sbjct: 240 ALERPSDHAPVTAEFDL 256
>gi|303237381|ref|ZP_07323951.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
gi|302482768|gb|EFL45793.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
Length = 250
Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 31/124 (25%), Gaps = 22/124 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+++ P ++ GD N I + + +
Sbjct: 131 KRLDEKKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKMTQFLGKGFIDSFRTLY 190
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
E+ + R K+ D +V S HCP+ +
Sbjct: 191 PEQVTYSWWSYRFKAREKNAGWRIDYFLLSDRLRAQLVDAKIHTE----VYGSDHCPVEV 246
Query: 117 EYDF 120
E +F
Sbjct: 247 ELNF 250
>gi|23501759|ref|NP_697886.1| exodeoxyribonuclease III [Brucella suis 1330]
gi|161618833|ref|YP_001592720.1| exodeoxyribonuclease III (xth) [Brucella canis ATCC 23365]
gi|225627361|ref|ZP_03785398.1| exodeoxyribonuclease III Xth [Brucella ceti str. Cudo]
gi|225852385|ref|YP_002732618.1| exodeoxyribonuclease III Xth [Brucella melitensis ATCC 23457]
gi|254701637|ref|ZP_05163465.1| exodeoxyribonuclease III Xth [Brucella suis bv. 5 str. 513]
gi|254704180|ref|ZP_05166008.1| exodeoxyribonuclease III Xth [Brucella suis bv. 3 str. 686]
gi|254706917|ref|ZP_05168745.1| exodeoxyribonuclease III Xth [Brucella pinnipedialis M163/99/10]
gi|254709975|ref|ZP_05171786.1| exodeoxyribonuclease III Xth [Brucella pinnipedialis B2/94]
gi|254713975|ref|ZP_05175786.1| exodeoxyribonuclease III Xth [Brucella ceti M644/93/1]
gi|256031468|ref|ZP_05445082.1| exodeoxyribonuclease III Xth [Brucella pinnipedialis M292/94/1]
gi|256044546|ref|ZP_05447450.1| exodeoxyribonuclease III Xth [Brucella melitensis bv. 1 str. Rev.1]
gi|256060978|ref|ZP_05451136.1| exodeoxyribonuclease III Xth [Brucella neotomae 5K33]
gi|256113411|ref|ZP_05454260.1| exodeoxyribonuclease III Xth [Brucella melitensis bv. 3 str. Ether]
gi|256159594|ref|ZP_05457356.1| exodeoxyribonuclease III Xth [Brucella ceti M490/95/1]
gi|256254874|ref|ZP_05460410.1| exodeoxyribonuclease III Xth [Brucella ceti B1/94]
gi|256264117|ref|ZP_05466649.1| exodeoxyribonuclease III [Brucella melitensis bv. 2 str. 63/9]
gi|256369301|ref|YP_003106809.1| exodeoxyribonuclease III [Brucella microti CCM 4915]
gi|260168602|ref|ZP_05755413.1| exodeoxyribonuclease III [Brucella sp. F5/99]
gi|261222058|ref|ZP_05936339.1| exodeoxyribonuclease III Xth [Brucella ceti B1/94]
gi|261314381|ref|ZP_05953578.1| exodeoxyribonuclease III Xth [Brucella pinnipedialis M163/99/10]
gi|261317523|ref|ZP_05956720.1| exodeoxyribonuclease III Xth [Brucella pinnipedialis B2/94]
gi|261321730|ref|ZP_05960927.1| exodeoxyribonuclease III Xth [Brucella ceti M644/93/1]
gi|261324980|ref|ZP_05964177.1| exodeoxyribonuclease III Xth [Brucella neotomae 5K33]
gi|261752190|ref|ZP_05995899.1| exodeoxyribonuclease III Xth [Brucella suis bv. 5 str. 513]
gi|261754849|ref|ZP_05998558.1| exodeoxyribonuclease III Xth [Brucella suis bv. 3 str. 686]
gi|265988558|ref|ZP_06101115.1| exodeoxyribonuclease III Xth [Brucella pinnipedialis M292/94/1]
gi|265990972|ref|ZP_06103529.1| exodeoxyribonuclease III Xth [Brucella melitensis bv. 1 str. Rev.1]
gi|265994809|ref|ZP_06107366.1| exodeoxyribonuclease III Xth [Brucella melitensis bv. 3 str. Ether]
gi|265998023|ref|ZP_06110580.1| exodeoxyribonuclease III Xth [Brucella ceti M490/95/1]
gi|23347687|gb|AAN29801.1| exodeoxyribonuclease III [Brucella suis 1330]
gi|161335644|gb|ABX61949.1| exodeoxyribonuclease III (xth) [Brucella canis ATCC 23365]
gi|225617366|gb|EEH14411.1| exodeoxyribonuclease III Xth [Brucella ceti str. Cudo]
gi|225640750|gb|ACO00664.1| exodeoxyribonuclease III Xth [Brucella melitensis ATCC 23457]
gi|255999461|gb|ACU47860.1| exodeoxyribonuclease III [Brucella microti CCM 4915]
gi|260920642|gb|EEX87295.1| exodeoxyribonuclease III Xth [Brucella ceti B1/94]
gi|261294420|gb|EEX97916.1| exodeoxyribonuclease III Xth [Brucella ceti M644/93/1]
gi|261296746|gb|EEY00243.1| exodeoxyribonuclease III Xth [Brucella pinnipedialis B2/94]
gi|261300960|gb|EEY04457.1| exodeoxyribonuclease III Xth [Brucella neotomae 5K33]
gi|261303407|gb|EEY06904.1| exodeoxyribonuclease III Xth [Brucella pinnipedialis M163/99/10]
gi|261741943|gb|EEY29869.1| exodeoxyribonuclease III Xth [Brucella suis bv. 5 str. 513]
gi|261744602|gb|EEY32528.1| exodeoxyribonuclease III Xth [Brucella suis bv. 3 str. 686]
gi|262552491|gb|EEZ08481.1| exodeoxyribonuclease III Xth [Brucella ceti M490/95/1]
gi|262765922|gb|EEZ11711.1| exodeoxyribonuclease III Xth [Brucella melitensis bv. 3 str. Ether]
gi|263001756|gb|EEZ14331.1| exodeoxyribonuclease III Xth [Brucella melitensis bv. 1 str. Rev.1]
gi|263094335|gb|EEZ18180.1| exodeoxyribonuclease III [Brucella melitensis bv. 2 str. 63/9]
gi|264660755|gb|EEZ31016.1| exodeoxyribonuclease III Xth [Brucella pinnipedialis M292/94/1]
gi|326408891|gb|ADZ65956.1| exodeoxyribonuclease III Xth [Brucella melitensis M28]
Length = 260
Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N + + F + +
Sbjct: 128 MQRLENWAKKRLTLEEPLVLAGDYNVIPEPVDARNPQAWLGDALFQPQSRQAFRRLENLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
ES ++ + ++ +S + K
Sbjct: 188 FTDAIRASTDESGVYSFWDYQAGAWQKNNGIRIDHLMLSPEATNRFISANIEKHVRAWEK 247
Query: 108 LSTHCPLTIEY 118
S H P+T+
Sbjct: 248 PSDHVPVTVTL 258
>gi|170019904|ref|YP_001724858.1| exonuclease III [Escherichia coli ATCC 8739]
gi|253773296|ref|YP_003036127.1| exonuclease III [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|300818391|ref|ZP_07098601.1| exodeoxyribonuclease III [Escherichia coli MS 107-1]
gi|300904608|ref|ZP_07122444.1| exodeoxyribonuclease III [Escherichia coli MS 84-1]
gi|300924797|ref|ZP_07140737.1| exodeoxyribonuclease III [Escherichia coli MS 182-1]
gi|300951354|ref|ZP_07165196.1| exodeoxyribonuclease III [Escherichia coli MS 116-1]
gi|300958643|ref|ZP_07170767.1| exodeoxyribonuclease III [Escherichia coli MS 175-1]
gi|301303958|ref|ZP_07210076.1| exodeoxyribonuclease III [Escherichia coli MS 124-1]
gi|301327485|ref|ZP_07220718.1| exodeoxyribonuclease III [Escherichia coli MS 78-1]
gi|301647945|ref|ZP_07247720.1| exodeoxyribonuclease III [Escherichia coli MS 146-1]
gi|309793523|ref|ZP_07687950.1| exodeoxyribonuclease III [Escherichia coli MS 145-7]
gi|331642351|ref|ZP_08343486.1| exodeoxyribonuclease III [Escherichia coli H736]
gi|169754832|gb|ACA77531.1| exodeoxyribonuclease III [Escherichia coli ATCC 8739]
gi|253324340|gb|ACT28942.1| exodeoxyribonuclease III [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|260449129|gb|ACX39551.1| exodeoxyribonuclease III [Escherichia coli DH1]
gi|300314694|gb|EFJ64478.1| exodeoxyribonuclease III [Escherichia coli MS 175-1]
gi|300403439|gb|EFJ86977.1| exodeoxyribonuclease III [Escherichia coli MS 84-1]
gi|300419004|gb|EFK02315.1| exodeoxyribonuclease III [Escherichia coli MS 182-1]
gi|300449344|gb|EFK12964.1| exodeoxyribonuclease III [Escherichia coli MS 116-1]
gi|300529031|gb|EFK50093.1| exodeoxyribonuclease III [Escherichia coli MS 107-1]
gi|300840755|gb|EFK68515.1| exodeoxyribonuclease III [Escherichia coli MS 124-1]
gi|300845916|gb|EFK73676.1| exodeoxyribonuclease III [Escherichia coli MS 78-1]
gi|301073916|gb|EFK88722.1| exodeoxyribonuclease III [Escherichia coli MS 146-1]
gi|308123110|gb|EFO60372.1| exodeoxyribonuclease III [Escherichia coli MS 145-7]
gi|315061052|gb|ADT75379.1| exonuclease III [Escherichia coli W]
gi|315136390|dbj|BAJ43549.1| exonuclease III [Escherichia coli DH1]
gi|315257443|gb|EFU37411.1| exodeoxyribonuclease III [Escherichia coli MS 85-1]
gi|324016423|gb|EGB85642.1| exodeoxyribonuclease III [Escherichia coli MS 117-3]
gi|331039149|gb|EGI11369.1| exodeoxyribonuclease III [Escherichia coli H736]
Length = 272
Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 134 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 193
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 194 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 254 IRSMEKPSDHAPVWATFR 271
>gi|227885825|ref|ZP_04003630.1| exodeoxyribonuclease III [Escherichia coli 83972]
gi|301050910|ref|ZP_07197761.1| exodeoxyribonuclease III [Escherichia coli MS 185-1]
gi|26108407|gb|AAN80609.1|AE016761_184 Exodeoxyribonuclease III [Escherichia coli CFT073]
gi|227837398|gb|EEJ47864.1| exodeoxyribonuclease III [Escherichia coli 83972]
gi|300297429|gb|EFJ53814.1| exodeoxyribonuclease III [Escherichia coli MS 185-1]
gi|307553768|gb|ADN46543.1| exodeoxyribonuclease III [Escherichia coli ABU 83972]
Length = 272
Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 134 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 193
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 194 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 254 IRSMEKPSDHAPVWATFR 271
>gi|260566570|ref|ZP_05837040.1| exodeoxyribonuclease III [Brucella suis bv. 4 str. 40]
gi|261758076|ref|ZP_06001785.1| exodeoxyribonuclease III [Brucella sp. F5/99]
gi|260156088|gb|EEW91168.1| exodeoxyribonuclease III [Brucella suis bv. 4 str. 40]
gi|261738060|gb|EEY26056.1| exodeoxyribonuclease III [Brucella sp. F5/99]
Length = 279
Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N + + F + +
Sbjct: 147 MQRLENWAKKRLTLEEPLVLAGDYNVIPEPVDARNPQAWLGDALFQPQSRQAFRRLENLG 206
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
ES ++ + ++ +S + K
Sbjct: 207 FTDAIRASTDESGVYSFWDYQAGAWQKNNGIRIDHLMLSPEATNRFISANIEKHVRAWEK 266
Query: 108 LSTHCPLTIEY 118
S H P+T+
Sbjct: 267 PSDHVPVTVTL 277
>gi|258546221|ref|ZP_05706455.1| exodeoxyribonuclease III [Cardiobacterium hominis ATCC 15826]
gi|258518646|gb|EEV87505.1| exodeoxyribonuclease III [Cardiobacterium hominis ATCC 15826]
Length = 253
Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 31/130 (23%), Gaps = 20/130 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-FWQK-----------------MDP 48
+ + ++ D + VI GD+N + D W+ +
Sbjct: 124 DAVTRYIDDLKREHPKLVIIGDYNIAPADLDVHDPDKWRDQILCSAPERQALANLLALGF 183
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + R L ++ ++ +
Sbjct: 184 KDAYRTLHPDTQQFSWWDYRMGGLRRNIG--LRIDLTLTSDALTLADAGIDTAPRHWERP 241
Query: 109 STHCPLTIEY 118
S H P ++
Sbjct: 242 SDHAPAWVKI 251
>gi|260563899|ref|ZP_05834385.1| exodeoxyribonuclease III [Brucella melitensis bv. 1 str. 16M]
gi|260153915|gb|EEW89007.1| exodeoxyribonuclease III [Brucella melitensis bv. 1 str. 16M]
Length = 279
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N + + F + +
Sbjct: 147 MQRLENWAKKRLTLEEPLVLAGDYNVIPEPVDARNPQAWLGDALFQPQSRQAFRRLENLG 206
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
ES ++ + ++ +S + K
Sbjct: 207 FTDAIRASTDESGVYSFWDYQAGAWQKNNGIRIDHLMLSPEATNRFISANIEKHVRAWEK 266
Query: 108 LSTHCPLTIEY 118
S H P+T+
Sbjct: 267 PSDHVPVTVTL 277
>gi|117623921|ref|YP_852834.1| exonuclease III [Escherichia coli APEC O1]
gi|237705700|ref|ZP_04536181.1| exonuclease III [Escherichia sp. 3_2_53FAA]
gi|301026483|ref|ZP_07189913.1| exodeoxyribonuclease III [Escherichia coli MS 69-1]
gi|91072540|gb|ABE07421.1| exodeoxyribonuclease III [Escherichia coli UTI89]
gi|115513045|gb|ABJ01120.1| exodeoxyribonuclease III [Escherichia coli APEC O1]
gi|226900457|gb|EEH86716.1| exonuclease III [Escherichia sp. 3_2_53FAA]
gi|300395501|gb|EFJ79039.1| exodeoxyribonuclease III [Escherichia coli MS 69-1]
gi|315286456|gb|EFU45891.1| exodeoxyribonuclease III [Escherichia coli MS 110-3]
gi|315299863|gb|EFU59103.1| exodeoxyribonuclease III [Escherichia coli MS 16-3]
Length = 272
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 134 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 193
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 194 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 254 IRSMEKPSDHAPVWATFR 271
>gi|331647243|ref|ZP_08348337.1| exodeoxyribonuclease III [Escherichia coli M605]
gi|331044026|gb|EGI16162.1| exodeoxyribonuclease III [Escherichia coli M605]
Length = 272
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 134 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 193
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 194 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 254 IRSMEKPSDHAPVWATFR 271
>gi|300823193|ref|ZP_07103326.1| exodeoxyribonuclease III [Escherichia coli MS 119-7]
gi|331677629|ref|ZP_08378304.1| exodeoxyribonuclease III [Escherichia coli H591]
gi|300524347|gb|EFK45416.1| exodeoxyribonuclease III [Escherichia coli MS 119-7]
gi|331074089|gb|EGI45409.1| exodeoxyribonuclease III [Escherichia coli H591]
Length = 272
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 134 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 193
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 194 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 254 IRSMEKPSDHAPVWATFR 271
>gi|300994386|ref|ZP_07180891.1| exodeoxyribonuclease III [Escherichia coli MS 45-1]
gi|300406232|gb|EFJ89770.1| exodeoxyribonuclease III [Escherichia coli MS 45-1]
gi|315290452|gb|EFU49827.1| exodeoxyribonuclease III [Escherichia coli MS 153-1]
Length = 272
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 34/138 (24%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L + + ++K P +I GD N + + +
Sbjct: 134 QNLHNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 193
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 194 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 254 IRSMEKPSDHAPVWATFR 271
>gi|206580746|ref|YP_002239049.1| exodeoxyribonuclease III [Klebsiella pneumoniae 342]
gi|206569804|gb|ACI11580.1| exodeoxyribonuclease III [Klebsiella pneumoniae 342]
Length = 268
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 34/138 (24%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++ P +I GD N + + +
Sbjct: 130 QNLQNYLETELNKENPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + ++ R+K D + D + V
Sbjct: 190 LLGWGLVDTWRQANPDNQEHFSWFDYRSKGFDDNRGLRIDLLLASQPLAQRCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRGMEKPSDHAPVWATFR 267
>gi|134299043|ref|YP_001112539.1| exodeoxyribonuclease III [Desulfotomaculum reducens MI-1]
gi|134051743|gb|ABO49714.1| Exodeoxyribonuclease III [Desulfotomaculum reducens MI-1]
Length = 264
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 33/136 (24%), Gaps = 19/136 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPDG 50
++ + + + +P + GDFN D ++
Sbjct: 129 MRDYFNTNYLSTLPLLWMGDFNVAPEPKDVHDPKRLYGKVGFHPEEHLALQYVKEWGFQD 188
Query: 51 LLIRFPQEKESTCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ E R K D+ + RR K S
Sbjct: 189 VFRMHEPEAGHFTFWDYRIPKGVERNLGWRIDHIWATESLAKRSTRAWIDMEPRRREKPS 248
Query: 110 THCPLTIEYDFEKGNV 125
H + E++ ++
Sbjct: 249 DHTLILAEFELSGESI 264
>gi|300930770|ref|ZP_07146143.1| exodeoxyribonuclease III [Escherichia coli MS 187-1]
gi|300461403|gb|EFK24896.1| exodeoxyribonuclease III [Escherichia coli MS 187-1]
Length = 272
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 134 QHLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 193
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 194 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 254 IRSMEKPSDHAPVWATFR 271
>gi|170768737|ref|ZP_02903190.1| exodeoxyribonuclease III [Escherichia albertii TW07627]
gi|170122285|gb|EDS91216.1| exodeoxyribonuclease III [Escherichia albertii TW07627]
Length = 268
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 32/136 (23%), Gaps = 25/136 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQKM 46
L+ + + ++K P +I GD N + + + +
Sbjct: 132 LQNYLETELKRENPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMERLL 191
Query: 47 DPD--GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
E R+K D + D + V
Sbjct: 192 SWGLVDTFRHANPETADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEIR 251
Query: 104 RRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 252 SMEKPSDHAPVWATFR 267
>gi|148559237|ref|YP_001258847.1| exodeoxyribonuclease III [Brucella ovis ATCC 25840]
gi|148370494|gb|ABQ60473.1| exodeoxyribonuclease III [Brucella ovis ATCC 25840]
Length = 279
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N + + F + +
Sbjct: 147 MQRLENWAKKRLTLEEPLVLAGDYNVIPEPVDARNPQAWLGDALFQPQSRQAFRRLENLG 206
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
ES ++ + ++ S + K
Sbjct: 207 FTDAIRASTDESGVYSFWDYQAGAWQKNNGIRIDHLMLSPEATNRFTSANIEKHVRAWEK 266
Query: 108 LSTHCPLTIEY 118
S H P+T+
Sbjct: 267 PSDHVPVTVTL 277
>gi|257055607|ref|YP_003133439.1| Exodeoxyribonuclease III [Saccharomonospora viridis DSM 43017]
gi|256585479|gb|ACU96612.1| Exodeoxyribonuclease III [Saccharomonospora viridis DSM 43017]
Length = 259
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 33/132 (25%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E L + PF + GDFN D ++ GL
Sbjct: 128 EALHTTVLAENSDDRPFAVLGDFNIAPTDDDVWDISLFADSTHVTEPERKALARLRDAGL 187
Query: 52 LIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
P+ + R + + D + ++ + +
Sbjct: 188 TDVVPRALKYDRPYTYWDYRQLAFPKNRGMRIDLVYANRPFADAVTDAYVDREERKGKGA 247
Query: 109 STHCPLTIEYDF 120
S H P+ ++
Sbjct: 248 SDHAPVVVDLTL 259
>gi|260545435|ref|ZP_05821176.1| exodeoxyribonuclease III [Brucella abortus NCTC 8038]
gi|260096842|gb|EEW80717.1| exodeoxyribonuclease III [Brucella abortus NCTC 8038]
Length = 279
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N + + F + +
Sbjct: 147 MQRLENWAKKRLTLEEPLVLAGDYNVIPEPVDARNPQAWLGDALFQPQSRQAFRRLENLG 206
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
ES ++ + ++ +S + K
Sbjct: 207 FTDAIRASTDESGVYSFWDYQAGAWQKNNGIRIDHLMLSPEATNRFISANIEKHVRAWEK 266
Query: 108 LSTHCPLTIEY 118
S H P+T+
Sbjct: 267 PSDHVPVTVTL 277
>gi|218705247|ref|YP_002412766.1| exonuclease III [Escherichia coli UMN026]
gi|293405248|ref|ZP_06649240.1| exodeoxyribonuclease III [Escherichia coli FVEC1412]
gi|298380891|ref|ZP_06990490.1| exodeoxyribonuclease III [Escherichia coli FVEC1302]
gi|218432344|emb|CAR13234.1| exonuclease III [Escherichia coli UMN026]
gi|291427456|gb|EFF00483.1| exodeoxyribonuclease III [Escherichia coli FVEC1412]
gi|298278333|gb|EFI19847.1| exodeoxyribonuclease III [Escherichia coli FVEC1302]
gi|323186929|gb|EFZ72247.1| exodeoxyribonuclease III [Escherichia coli RN587/1]
Length = 268
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|62289818|ref|YP_221611.1| exodeoxyribonuclease III [Brucella abortus bv. 1 str. 9-941]
gi|82699743|ref|YP_414317.1| AP endonuclease [Brucella melitensis biovar Abortus 2308]
gi|254689123|ref|ZP_05152377.1| AP endonuclease [Brucella abortus bv. 6 str. 870]
gi|254697256|ref|ZP_05159084.1| AP endonuclease [Brucella abortus bv. 2 str. 86/8/59]
gi|254730155|ref|ZP_05188733.1| AP endonuclease [Brucella abortus bv. 4 str. 292]
gi|256257372|ref|ZP_05462908.1| AP endonuclease [Brucella abortus bv. 9 str. C68]
gi|260754622|ref|ZP_05866970.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 6 str. 870]
gi|260757845|ref|ZP_05870193.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 4 str. 292]
gi|260761668|ref|ZP_05874011.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 2 str. 86/8/59]
gi|260883649|ref|ZP_05895263.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 9 str. C68]
gi|62195950|gb|AAX74250.1| Xth-1, exodeoxyribonuclease III [Brucella abortus bv. 1 str. 9-941]
gi|82615844|emb|CAJ10848.1| AP endonuclease, family 1:Exodeoxyribonuclease III
xth:Endonuclease/exonuclease/phosphatase family
[Brucella melitensis biovar Abortus 2308]
gi|260668163|gb|EEX55103.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 4 str. 292]
gi|260672100|gb|EEX58921.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 2 str. 86/8/59]
gi|260674730|gb|EEX61551.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 6 str. 870]
gi|260873177|gb|EEX80246.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 9 str. C68]
Length = 260
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N + + F + +
Sbjct: 128 MQRLENWAKKRLTLEEPLVLAGDYNVIPEPVDARNPQAWLGDALFQPQSRQAFRRLENLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
ES ++ + ++ +S + K
Sbjct: 188 FTDAIRASTDESGVYSFWDYQAGAWQKNNGIRIDHLMLSPEATNRFISANIEKHVRAWEK 247
Query: 108 LSTHCPLTIEY 118
S H P+T+
Sbjct: 248 PSDHVPVTVTL 258
>gi|37526441|ref|NP_929785.1| exonuclease III [Photorhabdus luminescens subsp. laumondii TTO1]
gi|36785872|emb|CAE14923.1| Exodeoxyribonuclease III (exonuclease III) (EXO III) (AP
endonuclease VI) [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 268
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 32/138 (23%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDF-- 42
+ L+ + +Q + +I GD N + D
Sbjct: 130 QDLQNYLEQNLTPQSHVIIMGDMNISPTDLDIGIGENNQKRWLKTGKCSFLPEERDWMDR 189
Query: 43 WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ E R+K D + D ++
Sbjct: 190 LKNWGLVDTFRHLNPECNDQFSWFDYRSKGFDDNRGLRIDLLLASKPLMDRCIATGIDYK 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ E++
Sbjct: 250 IREMEKPSDHAPVWAEFE 267
>gi|157146023|ref|YP_001453342.1| exonuclease III [Citrobacter koseri ATCC BAA-895]
gi|157083228|gb|ABV12906.1| hypothetical protein CKO_01777 [Citrobacter koseri ATCC BAA-895]
Length = 268
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 33/138 (23%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + D ++K P +I GD N + D
Sbjct: 130 QNLQNYLDNELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 189
Query: 43 WQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
E + R+K D + D + V
Sbjct: 190 LINWGLVDTFRHAHPETVDKFSWFDYRSKGFDDNRGLRIDLLLASNPLAEHCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ ++
Sbjct: 250 IRSMEKPSDHAPVWAKFR 267
>gi|251789807|ref|YP_003004528.1| exodeoxyribonuclease III [Dickeya zeae Ech1591]
gi|247538428|gb|ACT07049.1| exodeoxyribonuclease III [Dickeya zeae Ech1591]
Length = 268
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 33/139 (23%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + +Q ++ P +I GD N +
Sbjct: 130 QDLQHYLEQHHQSEQPVLIMGDMNISPADQDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 43 WQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ E ++ R+ D + D + +
Sbjct: 190 LKNWGLVDTFRAANPECQDRFSWFDYRSAGFDDNRGLRIDLIMATPPLASRCAATGIDYA 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 250 IRGMEKPSDHAPVWAEFTL 268
>gi|16129703|ref|NP_416263.1| exonuclease III [Escherichia coli str. K-12 substr. MG1655]
gi|74311932|ref|YP_310351.1| exonuclease III [Shigella sonnei Ss046]
gi|82543848|ref|YP_407795.1| exonuclease III [Shigella boydii Sb227]
gi|89108588|ref|AP_002368.1| exonuclease III [Escherichia coli str. K-12 substr. W3110]
gi|157157800|ref|YP_001463047.1| exonuclease III [Escherichia coli E24377A]
gi|157161211|ref|YP_001458529.1| exonuclease III [Escherichia coli HS]
gi|170081406|ref|YP_001730726.1| exonuclease III [Escherichia coli str. K-12 substr. DH10B]
gi|187730490|ref|YP_001880544.1| exonuclease III [Shigella boydii CDC 3083-94]
gi|188495310|ref|ZP_03002580.1| exodeoxyribonuclease III [Escherichia coli 53638]
gi|191169042|ref|ZP_03030806.1| exodeoxyribonuclease III [Escherichia coli B7A]
gi|193065803|ref|ZP_03046866.1| exodeoxyribonuclease III [Escherichia coli E22]
gi|193068936|ref|ZP_03049895.1| exodeoxyribonuclease III [Escherichia coli E110019]
gi|194428570|ref|ZP_03061109.1| exodeoxyribonuclease III [Escherichia coli B171]
gi|194438505|ref|ZP_03070594.1| exodeoxyribonuclease III [Escherichia coli 101-1]
gi|209919111|ref|YP_002293195.1| exonuclease III [Escherichia coli SE11]
gi|218554315|ref|YP_002387228.1| exonuclease III [Escherichia coli IAI1]
gi|238900963|ref|YP_002926759.1| exonuclease III [Escherichia coli BW2952]
gi|254161808|ref|YP_003044916.1| exonuclease III [Escherichia coli B str. REL606]
gi|256018057|ref|ZP_05431922.1| exonuclease III [Shigella sp. D9]
gi|256022587|ref|ZP_05436452.1| exonuclease III [Escherichia sp. 4_1_40B]
gi|260844099|ref|YP_003221877.1| exonuclease III [Escherichia coli O103:H2 str. 12009]
gi|260855614|ref|YP_003229505.1| exonuclease III [Escherichia coli O26:H11 str. 11368]
gi|260868274|ref|YP_003234676.1| exonuclease III [Escherichia coli O111:H- str. 11128]
gi|293446121|ref|ZP_06662543.1| exodeoxyribonuclease III [Escherichia coli B088]
gi|297518661|ref|ZP_06937047.1| exonuclease III [Escherichia coli OP50]
gi|301020970|ref|ZP_07185022.1| exodeoxyribonuclease III [Escherichia coli MS 196-1]
gi|307138408|ref|ZP_07497764.1| exonuclease III [Escherichia coli H736]
gi|307310679|ref|ZP_07590325.1| exodeoxyribonuclease III [Escherichia coli W]
gi|312969777|ref|ZP_07783960.1| exodeoxyribonuclease III [Escherichia coli 1827-70]
gi|332279097|ref|ZP_08391510.1| exonuclease III [Shigella sp. D9]
gi|2506193|sp|P09030|EX3_ECOLI RecName: Full=Exodeoxyribonuclease III; Short=EXO III;
Short=Exonuclease III; AltName: Full=AP endonuclease VI
gi|157829928|pdb|1AKO|A Chain A, Exonuclease Iii From Escherichia Coli
gi|43312|emb|CAA31424.1| exonuclease III [Escherichia coli K-12]
gi|1742858|dbj|BAA15540.1| exonuclease III [Escherichia coli str. K12 substr. W3110]
gi|1788046|gb|AAC74819.1| exonuclease III [Escherichia coli str. K-12 substr. MG1655]
gi|73855409|gb|AAZ88116.1| exonuclease III [Shigella sonnei Ss046]
gi|81245259|gb|ABB65967.1| exonuclease III [Shigella boydii Sb227]
gi|157066891|gb|ABV06146.1| exodeoxyribonuclease III [Escherichia coli HS]
gi|157079830|gb|ABV19538.1| exodeoxyribonuclease III [Escherichia coli E24377A]
gi|169889241|gb|ACB02948.1| exonuclease III [Escherichia coli str. K-12 substr. DH10B]
gi|187427482|gb|ACD06756.1| exodeoxyribonuclease III [Shigella boydii CDC 3083-94]
gi|188490509|gb|EDU65612.1| exodeoxyribonuclease III [Escherichia coli 53638]
gi|190900924|gb|EDV60709.1| exodeoxyribonuclease III [Escherichia coli B7A]
gi|192926575|gb|EDV81206.1| exodeoxyribonuclease III [Escherichia coli E22]
gi|192957731|gb|EDV88175.1| exodeoxyribonuclease III [Escherichia coli E110019]
gi|194413448|gb|EDX29731.1| exodeoxyribonuclease III [Escherichia coli B171]
gi|194422515|gb|EDX38513.1| exodeoxyribonuclease III [Escherichia coli 101-1]
gi|209912370|dbj|BAG77444.1| exonuclease III [Escherichia coli SE11]
gi|218361083|emb|CAQ98666.1| exonuclease III [Escherichia coli IAI1]
gi|238861051|gb|ACR63049.1| exonuclease III [Escherichia coli BW2952]
gi|242377470|emb|CAQ32223.1| exonuclease III [Escherichia coli BL21(DE3)]
gi|253973709|gb|ACT39380.1| exonuclease III [Escherichia coli B str. REL606]
gi|253977903|gb|ACT43573.1| exonuclease III [Escherichia coli BL21(DE3)]
gi|257754263|dbj|BAI25765.1| exonuclease III [Escherichia coli O26:H11 str. 11368]
gi|257759246|dbj|BAI30743.1| exonuclease III [Escherichia coli O103:H2 str. 12009]
gi|257764630|dbj|BAI36125.1| exonuclease III [Escherichia coli O111:H- str. 11128]
gi|291322951|gb|EFE62379.1| exodeoxyribonuclease III [Escherichia coli B088]
gi|299881725|gb|EFI89936.1| exodeoxyribonuclease III [Escherichia coli MS 196-1]
gi|306908857|gb|EFN39353.1| exodeoxyribonuclease III [Escherichia coli W]
gi|309701971|emb|CBJ01285.1| exodeoxyribonuclease III [Escherichia coli ETEC H10407]
gi|310338062|gb|EFQ03151.1| exodeoxyribonuclease III [Escherichia coli 1827-70]
gi|320173600|gb|EFW48793.1| Exodeoxyribonuclease III [Shigella dysenteriae CDC 74-1112]
gi|320184212|gb|EFW59027.1| Exodeoxyribonuclease III [Shigella flexneri CDC 796-83]
gi|320197933|gb|EFW72541.1| Exodeoxyribonuclease III [Escherichia coli EC4100B]
gi|323153006|gb|EFZ39275.1| exodeoxyribonuclease III [Escherichia coli EPECa14]
gi|323158544|gb|EFZ44559.1| exodeoxyribonuclease III [Escherichia coli E128010]
gi|323166246|gb|EFZ52021.1| exodeoxyribonuclease III [Shigella sonnei 53G]
gi|323175176|gb|EFZ60790.1| exodeoxyribonuclease III [Escherichia coli LT-68]
gi|323180528|gb|EFZ66073.1| exodeoxyribonuclease III [Escherichia coli 1180]
gi|323186233|gb|EFZ71585.1| exodeoxyribonuclease III [Escherichia coli 1357]
gi|323378375|gb|ADX50643.1| exodeoxyribonuclease III [Escherichia coli KO11]
gi|323937007|gb|EGB33287.1| exodeoxyribonuclease III [Escherichia coli E1520]
gi|323940585|gb|EGB36776.1| exodeoxyribonuclease III [Escherichia coli E482]
gi|323962060|gb|EGB57657.1| exodeoxyribonuclease III [Escherichia coli H489]
gi|323974008|gb|EGB69179.1| exodeoxyribonuclease III [Escherichia coli TA007]
gi|332096300|gb|EGJ01301.1| exodeoxyribonuclease III [Shigella boydii 3594-74]
gi|332101449|gb|EGJ04795.1| exonuclease III [Shigella sp. D9]
gi|332343470|gb|AEE56804.1| exodeoxyribonuclease III [Escherichia coli UMNK88]
Length = 268
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|296284849|ref|ZP_06862847.1| hypothetical protein CbatJ_14571 [Citromicrobium bathyomarinum
JL354]
Length = 257
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 27/131 (20%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E L+ P ++ GDFN + + +
Sbjct: 126 MERLRARMAALWAQEKPTIVLGDFNVIPQDKDVWSPPAMADDALMQPESRDAYARLLADG 185
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + L+ + + R K
Sbjct: 186 WTDAIDTLNPRGGVWTFWDYQRGAWQRDHGFRIDHCLLSPELADRLQAAGVDKHARGREK 245
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 246 ASDHAPVWVEI 256
>gi|15676313|ref|NP_273448.1| exodeoxyribonuclease III [Neisseria meningitidis MC58]
gi|134104765|pdb|2JC4|A Chain A, 3'-5' Exonuclease (Nexo) From Neisseria Meningitidis
gi|7225621|gb|AAF40839.1| exodeoxyribonuclease III [Neisseria meningitidis MC58]
gi|316984902|gb|EFV63858.1| exodeoxyribonuclease III [Neisseria meningitidis H44/76]
gi|325134978|gb|EGC57610.1| exodeoxyribonuclease III [Neisseria meningitidis M13399]
gi|325140915|gb|EGC63422.1| exodeoxyribonuclease III [Neisseria meningitidis CU385]
gi|325199589|gb|ADY95044.1| exodeoxyribonuclease III [Neisseria meningitidis H44/76]
Length = 256
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D ++Q +
Sbjct: 120 KEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFQNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + ++
Sbjct: 180 LDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLETR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+T E+D+
Sbjct: 240 ALERPSDHAPVTAEFDW 256
>gi|161486214|ref|NP_754044.2| exonuclease III [Escherichia coli CFT073]
Length = 268
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|331683257|ref|ZP_08383858.1| exodeoxyribonuclease III [Escherichia coli H299]
gi|331079472|gb|EGI50669.1| exodeoxyribonuclease III [Escherichia coli H299]
Length = 268
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|153836873|ref|ZP_01989540.1| metal-dependent hydrolase [Vibrio parahaemolyticus AQ3810]
gi|149749831|gb|EDM60576.1| metal-dependent hydrolase [Vibrio parahaemolyticus AQ3810]
Length = 288
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 6/123 (4%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
LSQQGE L KW ++ K + + GDFN ++ D W M ++ ++
Sbjct: 169 LSQQGEALAKWMSEREKKKEQYAVMGDFNHNLSYQ--RDWLWAIMTLGNDAQLVTRDTQA 226
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ---SDLDTRRSKLSTHCPLTIEY 118
C V S + + ++ + Q D KLS HCP+
Sbjct: 227 DCKVRSNKNPSKTHQFRSL-IDHIIVSPQIKAKNAHQTLFISQDVLDYKLSDHCPVNATV 285
Query: 119 DFE 121
Sbjct: 286 TLN 288
>gi|238894275|ref|YP_002919009.1| exonuclease III [Klebsiella pneumoniae NTUH-K2044]
gi|238546591|dbj|BAH62942.1| exonuclease III [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
Length = 272
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 34/138 (24%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++ P +I GD N + + +
Sbjct: 134 QNLQNYLETELNKENPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 193
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + ++ R+K D + D + V
Sbjct: 194 LLGWGLVDTWRQANPDNHEHFSWFDYRSKGFDDNRGLRIDLLLASQPLAQRCVETGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 254 IRGMEKPSDHAPVWATFR 271
>gi|82776806|ref|YP_403155.1| exonuclease III [Shigella dysenteriae Sd197]
gi|309788829|ref|ZP_07683424.1| exodeoxyribonuclease III [Shigella dysenteriae 1617]
gi|81240954|gb|ABB61664.1| exonuclease III [Shigella dysenteriae Sd197]
gi|308923100|gb|EFP68612.1| exodeoxyribonuclease III [Shigella dysenteriae 1617]
Length = 268
Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRDNPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|239927938|ref|ZP_04684891.1| exonuclease [Streptomyces ghanaensis ATCC 14672]
gi|291436275|ref|ZP_06575665.1| exonuclease [Streptomyces ghanaensis ATCC 14672]
gi|291339170|gb|EFE66126.1| exonuclease [Streptomyces ghanaensis ATCC 14672]
Length = 259
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 32/132 (24%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGL 51
E LK PF + GD+N D + GL
Sbjct: 128 EALKAAVAGDAAGERPFAVLGDYNVAPTDDDVYDRAAFEGLTHVTPAERAALASLRETGL 187
Query: 52 LIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
P+ + R + D + ++ + +
Sbjct: 188 SDIVPRPLKYEHPFTYWDYRQLCFPKNRGMRIDLVYGNAPFAKAVTDSYVDREERKGKGA 247
Query: 109 STHCPLTIEYDF 120
S H P+ ++ D
Sbjct: 248 SDHAPVVVDLDL 259
>gi|218699684|ref|YP_002407313.1| exonuclease III [Escherichia coli IAI39]
gi|218369670|emb|CAR17439.1| exonuclease III [Escherichia coli IAI39]
Length = 268
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|218695307|ref|YP_002402974.1| exonuclease III [Escherichia coli 55989]
gi|331668438|ref|ZP_08369286.1| exodeoxyribonuclease III [Escherichia coli TA271]
gi|218352039|emb|CAU97776.1| exonuclease III [Escherichia coli 55989]
gi|323948123|gb|EGB44113.1| exodeoxyribonuclease III [Escherichia coli H120]
gi|324119235|gb|EGC13123.1| exodeoxyribonuclease III [Escherichia coli E1167]
gi|331063632|gb|EGI35543.1| exodeoxyribonuclease III [Escherichia coli TA271]
Length = 268
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|162138430|ref|YP_540952.2| exonuclease III [Escherichia coli UTI89]
gi|170683141|ref|YP_001743499.1| exonuclease III [Escherichia coli SMS-3-5]
gi|215486966|ref|YP_002329397.1| exonuclease III [Escherichia coli O127:H6 str. E2348/69]
gi|218558617|ref|YP_002391530.1| exonuclease III [Escherichia coli S88]
gi|218689690|ref|YP_002397902.1| exonuclease III [Escherichia coli ED1a]
gi|293410066|ref|ZP_06653642.1| exodeoxyribonuclease III [Escherichia coli B354]
gi|306814999|ref|ZP_07449155.1| exonuclease III [Escherichia coli NC101]
gi|312966949|ref|ZP_07781167.1| exodeoxyribonuclease III [Escherichia coli 2362-75]
gi|331663230|ref|ZP_08364140.1| exodeoxyribonuclease III [Escherichia coli TA143]
gi|170520859|gb|ACB19037.1| exodeoxyribonuclease III [Escherichia coli SMS-3-5]
gi|215265038|emb|CAS09425.1| exonuclease III [Escherichia coli O127:H6 str. E2348/69]
gi|218365386|emb|CAR03109.1| exonuclease III [Escherichia coli S88]
gi|218427254|emb|CAR08144.2| exonuclease III [Escherichia coli ED1a]
gi|222033502|emb|CAP76243.1| exodeoxyribonuclease III [Escherichia coli LF82]
gi|291470534|gb|EFF13018.1| exodeoxyribonuclease III [Escherichia coli B354]
gi|294494019|gb|ADE92775.1| exodeoxyribonuclease III [Escherichia coli IHE3034]
gi|305851647|gb|EFM52100.1| exonuclease III [Escherichia coli NC101]
gi|307626765|gb|ADN71069.1| exonuclease III [Escherichia coli UM146]
gi|312288413|gb|EFR16315.1| exodeoxyribonuclease III [Escherichia coli 2362-75]
gi|312946349|gb|ADR27176.1| exonuclease III [Escherichia coli O83:H1 str. NRG 857C]
gi|320194541|gb|EFW69172.1| Exodeoxyribonuclease III [Escherichia coli WV_060327]
gi|323952256|gb|EGB48129.1| exodeoxyribonuclease III [Escherichia coli H252]
gi|323956518|gb|EGB52259.1| exodeoxyribonuclease III [Escherichia coli H263]
gi|331059029|gb|EGI31006.1| exodeoxyribonuclease III [Escherichia coli TA143]
Length = 268
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|56479910|ref|NP_707364.2| exonuclease III [Shigella flexneri 2a str. 301]
gi|56383461|gb|AAN43071.2| exonuclease III [Shigella flexneri 2a str. 301]
Length = 268
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGVVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|148277|gb|AAA24767.1| exonuclease III [Escherichia coli]
Length = 268
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|311279891|ref|YP_003942122.1| exodeoxyribonuclease III [Enterobacter cloacae SCF1]
gi|308749086|gb|ADO48838.1| exodeoxyribonuclease III [Enterobacter cloacae SCF1]
Length = 268
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 34/137 (24%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++ P +I GD N + + +
Sbjct: 130 QNLQNYLNTELNNENPVLIMGDMNISPTDLDIGIGDDNRKRWLRTGKCSFLPEEREWMAR 189
Query: 45 KMDPD--GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+D + + R+K D + D + V
Sbjct: 190 LLDWGLVDTFRHAHPDTQDKFSWFDYRSKGFDDNRGLRIDLLLASSPLAQRCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATF 266
>gi|281178820|dbj|BAI55150.1| exonuclease III [Escherichia coli SE15]
gi|330911554|gb|EGH40064.1| exodeoxyribonuclease 3 [Escherichia coli AA86]
Length = 268
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|323968517|gb|EGB63923.1| exodeoxyribonuclease III [Escherichia coli M863]
gi|327252867|gb|EGE64521.1| exodeoxyribonuclease III [Escherichia coli STEC_7v]
Length = 268
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 31/138 (22%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + + ++K P +I GD N + D
Sbjct: 130 QNLQNYLETELKRENPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 189
Query: 43 WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
E R+K D + D + V
Sbjct: 190 LISWGLVDTFRHANPETADRFSWFDYRSKGFDDNRGLRIDLLLASQPLADCCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|254454283|ref|ZP_05067720.1| exodeoxyribonuclease III [Octadecabacter antarcticus 238]
gi|198268689|gb|EDY92959.1| exodeoxyribonuclease III [Octadecabacter antarcticus 238]
Length = 266
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINS----------------IGDTDDFWQKMDPD 49
+ LK A Q I+ PF+IAGD+N F + ++
Sbjct: 134 MDRLKARASQLIELEEPFLIAGDYNIIPQPEDAARPDVWADDALFRPDSRAAFRRLLNLG 193
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ S ++ +FL+ N + + R K
Sbjct: 194 LTEAFRACHQGSGHYSFWDYQAGAWDKNDGIRIDHFLLSNQCADLLKDCWIESDVRGREK 253
Query: 108 LSTHCPLTIEYD 119
S H P+ +E D
Sbjct: 254 PSDHVPVWVELD 265
>gi|110805445|ref|YP_688965.1| exonuclease III [Shigella flexneri 5 str. 8401]
gi|110614993|gb|ABF03660.1| exonuclease III [Shigella flexneri 5 str. 8401]
Length = 268
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGVVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|30062986|ref|NP_837157.1| exonuclease III [Shigella flexneri 2a str. 2457T]
gi|30041235|gb|AAP16964.1| exonuclease III [Shigella flexneri 2a str. 2457T]
gi|281600889|gb|ADA73873.1| Exonuclease III [Shigella flexneri 2002017]
gi|313649224|gb|EFS13658.1| exodeoxyribonuclease III [Shigella flexneri 2a str. 2457T]
gi|332758722|gb|EGJ89041.1| exodeoxyribonuclease III [Shigella flexneri 2747-71]
gi|332759186|gb|EGJ89495.1| exodeoxyribonuclease III [Shigella flexneri K-671]
gi|332762505|gb|EGJ92770.1| exodeoxyribonuclease III [Shigella flexneri 4343-70]
gi|332767178|gb|EGJ97373.1| exodeoxyribonuclease III [Shigella flexneri 2930-71]
gi|333004385|gb|EGK23916.1| exodeoxyribonuclease III [Shigella flexneri K-218]
gi|333006836|gb|EGK26333.1| exodeoxyribonuclease III [Shigella flexneri K-272]
gi|333018389|gb|EGK37688.1| exodeoxyribonuclease III [Shigella flexneri K-304]
gi|333018754|gb|EGK38047.1| exodeoxyribonuclease III [Shigella flexneri K-227]
Length = 268
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGVVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|256784140|ref|ZP_05522571.1| exonuclease [Streptomyces lividans TK24]
gi|289768021|ref|ZP_06527399.1| exodeoxyribonuclease III [Streptomyces lividans TK24]
gi|289698220|gb|EFD65649.1| exodeoxyribonuclease III [Streptomyces lividans TK24]
Length = 259
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 33/132 (25%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
E L+ + G PF + GD+N D +
Sbjct: 128 EVLRAAVEGDAAGGRPFAVLGDYNVAPTDDDVYDRAAFEGATHVTPAERAALASLRGAGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + R + D + ++ + +
Sbjct: 188 SDVVPRPLKYDHPFTYWDYRQLCFPKNRGMRIDLVYGNEPFAKAVTDSYVDREERKGKGA 247
Query: 109 STHCPLTIEYDF 120
S H P+ ++ D
Sbjct: 248 SDHAPVVVDLDL 259
>gi|262043063|ref|ZP_06016204.1| exodeoxyribonuclease III [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039595|gb|EEW40725.1| exodeoxyribonuclease III [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 268
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 34/138 (24%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++ P +I GD N + + +
Sbjct: 130 QNLQNYLETELNKENPVLIMGDMNISPTDLDIGIGEENRKRWLLTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + ++ R+K D + D + V
Sbjct: 190 LLGWGLVDTWRQANPDNHEHFSWFDYRSKGFDDNRGLRIDLLLASQPLAQRCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRGMEKPSDHAPVWATFR 267
>gi|261378301|ref|ZP_05982874.1| exodeoxyribonuclease III [Neisseria cinerea ATCC 14685]
gi|269145396|gb|EEZ71814.1| exodeoxyribonuclease III [Neisseria cinerea ATCC 14685]
Length = 256
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 35/137 (25%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D ++Q +
Sbjct: 120 KEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSIERQWFQNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L E R + D+ + + +
Sbjct: 180 LDLGLTDSLRHIHPEGAFYTWFDYRGAMFQRKLGLRIDHILVTSEMAAVLKDVRVDLDTR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+ E+D
Sbjct: 240 ALERPSDHAPVAAEFDL 256
>gi|331653152|ref|ZP_08354157.1| exodeoxyribonuclease III [Escherichia coli M718]
gi|331049250|gb|EGI21322.1| exodeoxyribonuclease III [Escherichia coli M718]
Length = 272
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 134 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 193
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 194 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 254 IRSMEKPSDHAPVWATFR 271
>gi|88801994|ref|ZP_01117522.1| exodeoxyribonuclease III [Polaribacter irgensii 23-P]
gi|88782652|gb|EAR13829.1| exodeoxyribonuclease III [Polaribacter irgensii 23-P]
Length = 253
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 38/132 (28%), Gaps = 21/132 (15%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM-----------------DP 48
+ ++++ + K V+ GD+N + + + +
Sbjct: 126 MDEIQEYINNLKKEIPNLVVCGDYNICHEEMDIHNPKMKGVSGFLPEERTWMSDFIKSGF 185
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
Q+ ++ R + + ++ ++ +K
Sbjct: 186 VDSFRYLNQDVQAYSWWSYRANARANNKGW--RLDYAMVSSALKAHISRA--YILSEAKH 241
Query: 109 STHCPLTIEYDF 120
S HCP+ +E +
Sbjct: 242 SDHCPIVVELNL 253
>gi|290512900|ref|ZP_06552264.1| exodeoxyribonuclease III [Klebsiella sp. 1_1_55]
gi|289774513|gb|EFD82517.1| exodeoxyribonuclease III [Klebsiella sp. 1_1_55]
Length = 301
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 34/138 (24%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++ P +I GD N + + +
Sbjct: 163 QNLQNYLETELNKENPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 222
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + ++ R+K D + D + V
Sbjct: 223 LLGWGLVDTWRQANPDNQEHFSWFDYRSKGFDDNRGLRIDLLLASQPLAQRCVETGIDYE 282
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 283 IRGMEKPSDHAPVWATFR 300
>gi|333003732|gb|EGK23268.1| exodeoxyribonuclease III [Shigella flexneri VA-6]
Length = 268
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGVVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|328543967|ref|YP_004304076.1| exodeoxyribonuclease III [polymorphum gilvum SL003B-26A1]
gi|326413711|gb|ADZ70774.1| Exodeoxyribonuclease III [Polymorphum gilvum SL003B-26A1]
Length = 260
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 34/131 (25%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L++ A ++ PF++ GD+N + F ++
Sbjct: 128 MDRLRRHAALRLAEEQPFLLLGDYNVIPEPKDARNPQDWLGDALFQPESRQHFRALVNLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ ++ + L+ + S K
Sbjct: 188 FTEAVRACTDAADTYTFWDYQAGAWQKNNGIRIDHVLLSPQAGDLLASCGIDKHVRAWEK 247
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 248 PSDHVPVWVEL 258
>gi|288935952|ref|YP_003440011.1| exodeoxyribonuclease III [Klebsiella variicola At-22]
gi|288890661|gb|ADC58979.1| exodeoxyribonuclease III [Klebsiella variicola At-22]
Length = 268
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 34/138 (24%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++ P +I GD N + + +
Sbjct: 130 QNLQNYLETELNKENPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + ++ R+K D + D + V
Sbjct: 190 LLGWGLVDTWRQANPDNQEHFSWFDYRSKGFDDNRGLRIDLLLASQPLAQRCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRGMEKPSDHAPVWATFR 267
>gi|294632194|ref|ZP_06710754.1| exodeoxyribonuclease III [Streptomyces sp. e14]
gi|292835527|gb|EFF93876.1| exodeoxyribonuclease III [Streptomyces sp. e14]
Length = 261
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGL 51
E LK PF + GD+N D + GL
Sbjct: 130 EALKAAVAGDAAGSRPFAVLGDYNVAPTDDDVYDRAAFEGATHVTPAERAALASLREAGL 189
Query: 52 LIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
P+ + R + D + ++ + +
Sbjct: 190 ADVVPRPLKYEHPFTYWDYRQLCFPKNRGMRIDLVYGNEPFAKAVTDAYVDREERKGKGA 249
Query: 109 STHCPLTIEYD 119
S H P+ ++ D
Sbjct: 250 SDHAPVVVDLD 260
>gi|256422393|ref|YP_003123046.1| exodeoxyribonuclease III Xth [Chitinophaga pinensis DSM 2588]
gi|256037301|gb|ACU60845.1| exodeoxyribonuclease III Xth [Chitinophaga pinensis DSM 2588]
Length = 259
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 18/129 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ L A + + +P ++ GD+N + ++++ G
Sbjct: 127 KRLTAHAKELLAQDVPVILTGDYNVMPTELDVYKPERWVDDALFRPETRAAFKELVELGW 186
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ E++ + + D+ + + K
Sbjct: 187 TDAIRKLYPEEKIYTFWDYFRDAYGRNAGLRIDHFLLSPHFGKRLKAAGVDRDVRGWEKT 246
Query: 109 STHCPLTIE 117
S H P+ IE
Sbjct: 247 SDHAPVWIE 255
>gi|163843144|ref|YP_001627548.1| exodeoxyribonuclease III (xth) [Brucella suis ATCC 23445]
gi|163673867|gb|ABY37978.1| exodeoxyribonuclease III (xth) [Brucella suis ATCC 23445]
Length = 260
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N + + F + +
Sbjct: 128 MQRLENWAKKRLTLEEPLVLAGDYNVIPEPVDARNPQAWLGDALFQPQSRQAFRRLENLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
ES ++ + ++ +S + K
Sbjct: 188 FTDAIRASTDESGVYSFWDYQAGAWQKNNGIRIDHLMLSPEATNRFISANIEKHVRAWEK 247
Query: 108 LSTHCPLTIEY 118
S H P+T+
Sbjct: 248 PSDHVPVTVTL 258
>gi|152969774|ref|YP_001334883.1| exonuclease III [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|330012539|ref|ZP_08307413.1| exodeoxyribonuclease III [Klebsiella sp. MS 92-3]
gi|150954623|gb|ABR76653.1| exonuclease III [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|328533786|gb|EGF60471.1| exodeoxyribonuclease III [Klebsiella sp. MS 92-3]
Length = 268
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 34/138 (24%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++ P +I GD N + + +
Sbjct: 130 QNLQNYLETELNKENPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + ++ R+K D + D + V
Sbjct: 190 LLGWGLVDTWRQANPDNHEHFSWFDYRSKGFDDNRGLRIDLLLASQPLAQRCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRGMEKPSDHAPVWATFR 267
>gi|13471192|ref|NP_102761.1| exodeoxyribonuclease III [Mesorhizobium loti MAFF303099]
gi|14021936|dbj|BAB48547.1| exodeoxyribonuclease III [Mesorhizobium loti MAFF303099]
Length = 264
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 18/136 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
L++WA++++K V+AGD+N I F + ++
Sbjct: 129 MARLERWAEERLKLEEALVLAGDYNVIPEPIDARFPENWLGDALFQPQTRQAFRRLLNLG 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
++ + L+ S K
Sbjct: 189 FTEAVRAVTDAPDTYTFWDYQAGAWQKNNGIRIDHLLLSPEAANRFSSASIEKHVRAWEK 248
Query: 108 LSTHCPLTIEYDFEKG 123
S H P+ I+ +
Sbjct: 249 PSDHVPVAIDLALQPA 264
>gi|323978068|gb|EGB73154.1| exodeoxyribonuclease III [Escherichia coli TW10509]
Length = 268
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRENPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLADCCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|284921668|emb|CBG34740.1| exodeoxyribonuclease III [Escherichia coli 042]
Length = 268
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRENPVLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 190 LMSWGLVDTFRQANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|254672519|emb|CBA06061.1| exodeoxyribonuclease III [Neisseria meningitidis alpha275]
gi|254673406|emb|CBA08729.1| exodeoxyribonuclease III [Neisseria meningitidis alpha275]
gi|308388602|gb|ADO30922.1| exodeoxyribonuclease III [Neisseria meningitidis alpha710]
gi|325130865|gb|EGC53597.1| exodeoxyribonuclease III [Neisseria meningitidis OX99.30304]
gi|325136967|gb|EGC59564.1| exodeoxyribonuclease III [Neisseria meningitidis M0579]
gi|325202788|gb|ADY98242.1| exodeoxyribonuclease III [Neisseria meningitidis M01-240149]
gi|325208783|gb|ADZ04235.1| exodeoxyribonuclease III [Neisseria meningitidis NZ-05/33]
Length = 256
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D +++ +
Sbjct: 120 KEQWFAALTEFVRDEMTRYGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFKNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + ++
Sbjct: 180 LDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLETR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+T E+D+
Sbjct: 240 ALERPSDHAPVTAEFDW 256
>gi|319782509|ref|YP_004141985.1| exodeoxyribonuclease III Xth [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317168397|gb|ADV11935.1| exodeoxyribonuclease III Xth [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 256
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGLL 52
L+ A+Q + TG+P V+AGD+N ++++ G L
Sbjct: 127 RLEAHAEQLLDTGLPVVLAGDYNIVPEPRDIYATRSYDDNALVQPESRASFRRLLDQGWL 186
Query: 53 IRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ R + D+ + + + S
Sbjct: 187 DALRKKHPKETLYTFWDYRRNRWPRDAGLRLDHILLSKKLARRLTAAGIDRDVRGEDGAS 246
Query: 110 THCPLTIEY 118
H P+ +E
Sbjct: 247 DHAPVWVEL 255
>gi|309379045|emb|CBX22347.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 256
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 36/137 (26%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKM 46
+Q L ++ ++ V+ GDFN D +Q +
Sbjct: 120 KEQWFAALTEFVRDEMTRYGKLVLLGDFNIAPADADCYDPKKWYEKIHCSSVERQWFQNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + ++
Sbjct: 180 LDLGLTDSLRQVHPEGVFYTWFDYRGAMFQRKLGLRIDHILVSPAMAEALKDVRVDLDTR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+T E+D
Sbjct: 240 ALERPSDHAPVTAEFDL 256
>gi|161870674|ref|YP_001599847.1| exodeoxyribonuclease III [Neisseria meningitidis 053442]
gi|161596227|gb|ABX73887.1| exodeoxyribonuclease III [Neisseria meningitidis 053442]
gi|319411070|emb|CBY91471.1| exodeoxyribonuclease III (exonuclease III; EXO III) [Neisseria
meningitidis WUE 2594]
Length = 256
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 38/137 (27%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D ++Q +
Sbjct: 120 KEQWFAALTEFVRDEMTRYGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFQNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + ++
Sbjct: 180 LDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLETR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+T E+D+
Sbjct: 240 ALERPSDHAPVTAEFDW 256
>gi|87198182|ref|YP_495439.1| exodeoxyribonuclease III [Novosphingobium aromaticivorans DSM
12444]
gi|87133863|gb|ABD24605.1| Exodeoxyribonuclease III [Novosphingobium aromaticivorans DSM
12444]
Length = 259
Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 32/132 (24%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIG----------------DTDDFWQKMDPD 49
E L+ +P ++ GD+N D + + ++
Sbjct: 127 MERLRARMADIASEEVPALVIGDYNVIPEDKDTFSVKAMASDALMQPESRDAYRRLLNDG 186
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ ++ + L+ +V+ R K
Sbjct: 187 WTDAIDLFNPQGGVWTFWDYQAGAWQRDHGFRIDHALLSPELADRLVAAGVDKDYRGREK 246
Query: 108 LSTHCPLTIEYD 119
S H P+ +
Sbjct: 247 ASDHAPVWVTLR 258
>gi|325203504|gb|ADY98957.1| exodeoxyribonuclease III [Neisseria meningitidis M01-240355]
Length = 256
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D +++ +
Sbjct: 120 KEQWFAALTEFVRDEMTRYGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFKNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + ++
Sbjct: 180 LDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLETR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+T E+D+
Sbjct: 240 ALERPSDHAPVTAEFDW 256
>gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus
str. psy62]
gi|254039965|gb|ACT56761.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 281
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDGLL 52
++A Q+++ P + AGD+N + Q M +
Sbjct: 136 RFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAI 195
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
S I D+ + + + S +K S H
Sbjct: 196 RATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARIDTKPRGWTKPSDHT 255
Query: 113 PLTIEYDFEK 122
P+ + D +
Sbjct: 256 PVIVSLDIPE 265
>gi|15965272|ref|NP_385625.1| putative exodeoxyribonuclease III protein [Sinorhizobium meliloti
1021]
gi|307309295|ref|ZP_07588963.1| exodeoxyribonuclease III Xth [Sinorhizobium meliloti BL225C]
gi|307317036|ref|ZP_07596477.1| exodeoxyribonuclease III Xth [Sinorhizobium meliloti AK83]
gi|15074452|emb|CAC46098.1| Putative exodeoxyribonuclease III [Sinorhizobium meliloti 1021]
gi|306897124|gb|EFN27869.1| exodeoxyribonuclease III Xth [Sinorhizobium meliloti AK83]
gi|306900296|gb|EFN30913.1| exodeoxyribonuclease III Xth [Sinorhizobium meliloti BL225C]
Length = 263
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 18/136 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPD 49
L +A+Q++ P ++AGD+N + D F + +
Sbjct: 128 MRRLAAFAEQRLVLEEPLILAGDYNVIPEAHDCWDVKVWRNDALYLPETRAAFRRLRNLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
E+ ++ + ++ +VS K
Sbjct: 188 FTDAVRATSDEAPLYSFWDYQAGCWQKNFGIRIDHLMLSPEAADKLVSTSIEKHVRAWEK 247
Query: 108 LSTHCPLTIEYDFEKG 123
S H P+T E+ FE
Sbjct: 248 PSDHVPVTAEFAFETA 263
>gi|238910880|ref|ZP_04654717.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
Length = 268
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMSR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + ++ R+K +D + D +
Sbjct: 190 LLKWGLVDTFRQANPQTMDKFSWFDYRSKGFVDNRGLRIDLLLASAPLAERCAETGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|170740918|ref|YP_001769573.1| exodeoxyribonuclease III Xth [Methylobacterium sp. 4-46]
gi|168195192|gb|ACA17139.1| exodeoxyribonuclease III Xth [Methylobacterium sp. 4-46]
Length = 270
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 18/134 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDG 50
L A Q + V+AGD+N + D F ++
Sbjct: 131 RRLTAHARQLREREEVLVLAGDYNVIPEPVDVADPAAWLGDALFRPESRAAFRALLNEGF 190
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKL 108
++ ++ + + L+ +VS K
Sbjct: 191 ADALRACDERPGLYTFWDYQAGAWPRNLGIRIDHLLLSPQALDRLVSASVQKHLRGLEKP 250
Query: 109 STHCPLTIEYDFEK 122
S H P+T+E D ++
Sbjct: 251 SDHVPVTVELDLDR 264
>gi|221639069|ref|YP_002525331.1| Exodeoxyribonuclease III [Rhodobacter sphaeroides KD131]
gi|221159850|gb|ACM00830.1| Exodeoxyribonuclease III [Rhodobacter sphaeroides KD131]
Length = 268
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E +K A + + T P V+AGD+N + F + ++
Sbjct: 136 MERMKTRAAELLATEEPVVLAGDYNVIPQAEDAARPEVWVTDALFLPESRAAFRRILNLG 195
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSK 107
+ ++ + L+ + + K
Sbjct: 196 YTEAFRARTFGPGHYSFWDYQAGAWEKNNGIRIDHLLLSPQAADLMTDVRIDREVRSGEK 255
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 256 PSDHVPVWVEL 266
>gi|103487661|ref|YP_617222.1| exodeoxyribonuclease III (xth) [Sphingopyxis alaskensis RB2256]
gi|98977738|gb|ABF53889.1| Exodeoxyribonuclease III [Sphingopyxis alaskensis RB2256]
Length = 256
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 35/132 (26%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
L++ A + IP V+AGD+N + D +++ +
Sbjct: 125 MARLRERARMLLAAEIPTVLAGDYNVIPHDDDVWDPRAMATDALMQPESRDAWFRLLGDG 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ ++ + L+ + +V R K
Sbjct: 185 WTDALRSRHPAGHVWTYWDYQAGAWQRDHGFRIDHLLLSPALADRLVDAGVDKDHRGREK 244
Query: 108 LSTHCPLTIEYD 119
S H P +
Sbjct: 245 ASDHAPTWVVLS 256
>gi|51246268|ref|YP_066152.1| exodeoxyribonuclease (ExoA) [Desulfotalea psychrophila LSv54]
gi|50877305|emb|CAG37145.1| probable exodeoxyribonuclease (ExoA) [Desulfotalea psychrophila
LSv54]
Length = 480
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 23/130 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
L + QK++ ++ GDFN I + +
Sbjct: 354 RALLAFF-QKLEKEKAVILCGDFNVAHKEIDLKNPKSNVKNAGFTPEERAWMDEFLEAGY 412
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q+ E+ R + D + IV+ +
Sbjct: 413 TDTFRLFNQDPENYSWWSYRFSARSKNIGWRIDYFCVSENGQKRIVNAEI----LPEVMG 468
Query: 109 STHCPLTIEY 118
S HCP+ +++
Sbjct: 469 SDHCPVLLDF 478
>gi|322832771|ref|YP_004212798.1| exodeoxyribonuclease III [Rahnella sp. Y9602]
gi|321167972|gb|ADW73671.1| exodeoxyribonuclease III [Rahnella sp. Y9602]
Length = 269
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 13/140 (9%), Positives = 31/140 (22%), Gaps = 25/140 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
L+ + + P V+ GD N + D
Sbjct: 130 RDLQDYLTTSLSVNNPVVVMGDVNISPTDLDIGIGEDSRKRWLRTGKCSFLPEEREWMDR 189
Query: 43 WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + R++ + + D + ++
Sbjct: 190 LKGWGLIDTFRAANPDTADKFSWFDYRSRGFDENRGLRIDLIMASTPLAARCIATGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYDFE 121
+ S H P+ +D +
Sbjct: 250 IRGMERPSDHAPIWATFDLK 269
>gi|261401182|ref|ZP_05987307.1| exodeoxyribonuclease III [Neisseria lactamica ATCC 23970]
gi|269208860|gb|EEZ75315.1| exodeoxyribonuclease III [Neisseria lactamica ATCC 23970]
Length = 256
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 37/137 (27%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKM 46
+Q L ++ ++ V+ GDFN D +Q +
Sbjct: 120 KEQWFAALTEFVRDEMTRYGKLVLLGDFNIAPADADCYDPKKWYEKIHCSSVERQWFQNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + ++
Sbjct: 180 LDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAEALKDVRVDLDTR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+T E+D+
Sbjct: 240 ALERPSDHAPVTAEFDW 256
>gi|126462083|ref|YP_001043197.1| exodeoxyribonuclease III [Rhodobacter sphaeroides ATCC 17029]
gi|126103747|gb|ABN76425.1| Exodeoxyribonuclease III [Rhodobacter sphaeroides ATCC 17029]
Length = 259
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E +K A + + T P V+AGD+N + F + ++
Sbjct: 127 MERMKARAAELLATEEPVVLAGDYNVIPQAEDAARPEVWVTDALFLPESRAAFRRILNLG 186
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSK 107
+ ++ + L+ + + K
Sbjct: 187 YTEAFRARTFGPGHYSFWDYQAGAWEKNNGIRIDHLLLSPQAADLMTDVRIDREVRSGEK 246
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 247 PSDHVPVWVEL 257
>gi|119383680|ref|YP_914736.1| exodeoxyribonuclease III Xth [Paracoccus denitrificans PD1222]
gi|119373447|gb|ABL69040.1| Exodeoxyribonuclease III [Paracoccus denitrificans PD1222]
Length = 261
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 33/134 (24%), Gaps = 20/134 (14%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIG----------------DTDDFWQKMDPD 49
E L+ A + T +P + GD+N S + +
Sbjct: 127 MERLRARAKALLATEMPVAMMGDYNVIPESRDAAFPEKWLDDALFQPESRAALRRILFDG 186
Query: 50 GLL--IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRR 105
++ + L+ + + + +
Sbjct: 187 WADAVRLRHPGSTRGPFTFWDYQAGAWQRDNGIRIDHVLLSPQAADLLIDVGIDRDERAK 246
Query: 106 SKLSTHCPLTIEYD 119
K S H P+ ++ D
Sbjct: 247 DKPSDHVPVWVDLD 260
>gi|294852226|ref|ZP_06792899.1| exodeoxyribonuclease III [Brucella sp. NVSL 07-0026]
gi|294820815|gb|EFG37814.1| exodeoxyribonuclease III [Brucella sp. NVSL 07-0026]
Length = 260
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N +G + F + +
Sbjct: 128 MQRLENWAKKRLTLEEPLVLAGDYNVIPEPVGARNPQAWLGDALFQPQSRQAFRRLENLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
ES ++ + ++ +S + K
Sbjct: 188 FTDAIRASTDESGVYSFWDYQAGAWQKNNGIRIDHLMLSPEATNRFISANIEKHVRAWEK 247
Query: 108 LSTHCPLTIEY 118
S H P+T+
Sbjct: 248 PSDHVPVTVTL 258
>gi|197103425|ref|YP_002128803.1| exodeoxyribonuclease III [Phenylobacterium zucineum HLK1]
gi|196480701|gb|ACG80228.1| exodeoxyribonuclease III [Phenylobacterium zucineum HLK1]
Length = 262
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 38/130 (29%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLL 52
L + A + +KT P V+AGDFN + ++ + G
Sbjct: 127 RLNRRAAELVKTCTPAVLAGDFNIIPTELDAYKPERWVDDALFRPESRAAFEALLDQGWR 186
Query: 53 IRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + + D+ S +V+ +K S
Sbjct: 187 DALRSLHPAERIFTFWDYFRNAFPRDAGLRIDHLLLSPTLSSRLVAAGVDRHVRGWAKTS 246
Query: 110 THCPLTIEYD 119
H P+ +E +
Sbjct: 247 DHAPVWVELE 256
>gi|302555181|ref|ZP_07307523.1| exodeoxyribonuclease III [Streptomyces viridochromogenes DSM 40736]
gi|302472799|gb|EFL35892.1| exodeoxyribonuclease III [Streptomyces viridochromogenes DSM 40736]
Length = 259
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
E LK PF + GD+N D ++
Sbjct: 128 EALKAAVAGDAAGSRPFAVMGDYNVAPTDDDVFDPAAFADSTHVTPAERAALASLREAGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + + R + D + ++ + +
Sbjct: 188 SDVVPRPLKYEHPFTYWDYRQLCFPKNRGMRIDLVYANEPFTKAVEDAYVDREERKGKGA 247
Query: 109 STHCPLTIEYD 119
S H P+ ++ D
Sbjct: 248 SDHAPVVVDLD 258
>gi|319783180|ref|YP_004142656.1| exodeoxyribonuclease III Xth [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169068|gb|ADV12606.1| exodeoxyribonuclease III Xth [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 264
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 18/136 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
L++WA+++++ V+AGD+N I F + ++
Sbjct: 129 MARLERWAEERLRLEEALVLAGDYNVIPEPIDARFPENWLGDALFQPQTRQAFRRLLNLG 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
++ + L+ S K
Sbjct: 189 FTEAVRAVTDARDTYTFWDYQAGAWQKNNGIRIDHLLLSPEAANRFSSASIEKHVRAWEK 248
Query: 108 LSTHCPLTIEYDFEKG 123
S H P+ I+ +
Sbjct: 249 PSDHVPVAIDLALQPA 264
>gi|297203458|ref|ZP_06920855.1| exodeoxyribonuclease III [Streptomyces sviceus ATCC 29083]
gi|197716336|gb|EDY60370.1| exodeoxyribonuclease III [Streptomyces sviceus ATCC 29083]
Length = 259
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
E LK PF + GD+N D ++
Sbjct: 128 EALKAAVAGDAAGSRPFAVLGDYNVAPTDDDVYDVAAFEGLTHVTPAERAALASLREAGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + R + D + ++ + +
Sbjct: 188 SDVVPRPLKYDHPFTYWDYRQLCFPKNRGMRIDLVYGNESFAKAVTDAYVDREERKGKGA 247
Query: 109 STHCPLTIEYD 119
S H P+ ++ D
Sbjct: 248 SDHAPVVVDLD 258
>gi|254476088|ref|ZP_05089474.1| endonuclease/exonuclease/phosphatase [Ruegeria sp. R11]
gi|214030331|gb|EEB71166.1| endonuclease/exonuclease/phosphatase [Ruegeria sp. R11]
Length = 331
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 22/139 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKIN-----------------SIGDTDDFWQKMD 47
Q WL++ DQ++ G ++ GD N + D Q +
Sbjct: 193 QAIWLRRRIDQRLAEGQDVIVLGDLNDGPGLDQYEKLFNRSSVEIVMNSDLHDPHAQSLL 252
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFV-----IDRDNKNFLIDNSFSIVSYDQSDLD 102
L + + + + LDY + + + + Y+ + L
Sbjct: 253 APRLRVLPSTARFYNKETRRYFSALLDYIMLSPGLMRHQPRWRIWHPFEDAACYEDAPLR 312
Query: 103 TRRSKLSTHCPLTIEYDFE 121
+ S H P++++ D
Sbjct: 313 EALLQASDHFPVSLDIDLP 331
>gi|148550719|ref|YP_001260158.1| exodeoxyribonuclease III Xth [Sphingomonas wittichii RW1]
gi|148503138|gb|ABQ71391.1| exodeoxyribonuclease III Xth [Sphingomonas wittichii RW1]
Length = 269
Score = 72.6 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDG 50
+ L + A +++G+P ++AGDFN + +++ +D
Sbjct: 126 DRLIEHAAGLLESGLPVMLAGDFNVMPTDLDVYKPERWLDDALFAPEVRAAYFRLLDQGW 185
Query: 51 LLIR--FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + D+ + ++ K
Sbjct: 186 TDALRTLHPGEVIYTFWDYFRNAYGRNAGLRIDHLLLSPALADRLLDAQVDRHVRGWEKT 245
Query: 109 STHCPLTIEY 118
S H P+ IE
Sbjct: 246 SDHAPVWIEL 255
>gi|94969020|ref|YP_591068.1| exodeoxyribonuclease III (xth) [Candidatus Koribacter versatilis
Ellin345]
gi|94551070|gb|ABF40994.1| exodeoxyribonuclease III (xth) [Candidatus Koribacter versatilis
Ellin345]
Length = 260
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 33/136 (24%), Gaps = 23/136 (16%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------F 42
L + + ++ W IP V+AGD+N I
Sbjct: 128 LDRLIQEMQSWLK----DDIPTVVAGDYNIIPEDIDCHKPSSWIRDALFQPEPRERYRAL 183
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
D P E K+ I D+ +
Sbjct: 184 LAMGYTDAFRTLHPGETGQFTFWDYFRKAFETNRGIRIDHFLLSPSLKPRLAKCHIDTEP 243
Query: 103 TRRSKLSTHCPLTIEY 118
+ K S H P+ +E
Sbjct: 244 RKLEKPSDHTPIVLEL 259
>gi|126739465|ref|ZP_01755158.1| exodeoxyribonuclease III [Roseobacter sp. SK209-2-6]
gi|126719565|gb|EBA16274.1| exodeoxyribonuclease III [Roseobacter sp. SK209-2-6]
Length = 268
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E L K A + P ++AGD+N + + Q ++
Sbjct: 136 MERLHKRAQDLLAEETPALMAGDYNIIPQAEDAKRPEAWREDALHRPESRAAYQQIVNLG 195
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + ++ +FL+ + + R K
Sbjct: 196 FTEAFRARHQGPGHYSFWDYQAGAWNRDDGIRIDHFLLSPQAADLLRDCQIDKEIRGREK 255
Query: 108 LSTHCPLTIEYDF 120
S H P+ ++ D
Sbjct: 256 PSDHVPIWVDLDL 268
>gi|62179894|ref|YP_216311.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|62127527|gb|AAX65230.1| exonuclease III, may repair singlet oxygen induced lesions
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|322714361|gb|EFZ05932.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
Length = 268
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKCNNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMSR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + ++ R+K +D + D +
Sbjct: 190 LLKWGLVDTFRQANPQTMDKFSWFDYRSKGFVDNRGLRIDLLLASAPLAERCAETGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|304386652|ref|ZP_07368935.1| exodeoxyribonuclease III [Neisseria meningitidis ATCC 13091]
gi|304339271|gb|EFM05348.1| exodeoxyribonuclease III [Neisseria meningitidis ATCC 13091]
Length = 256
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 38/137 (27%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D +++ +
Sbjct: 120 KEQWFAALTEFVRDEMTRYGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFKNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + ++
Sbjct: 180 LDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAEALKDVRVDLETR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+T E+D+
Sbjct: 240 ALERPSDHAPVTAEFDW 256
>gi|290956326|ref|YP_003487508.1| exonuclease [Streptomyces scabiei 87.22]
gi|260645852|emb|CBG68943.1| putative exonuclease [Streptomyces scabiei 87.22]
Length = 259
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
E LK PF + GD+N D ++
Sbjct: 128 EALKAAVAGDAAGSRPFAVMGDYNVAPTDDDVYDVAAFEGLTHVTPAERAALASLREAGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + + R + D + ++ + +
Sbjct: 188 TDVVPRPLKYEHPFTYWDYRQLCFPKNRGMRIDLVYGNETFAKAVTDSYVDREERKGKGA 247
Query: 109 STHCPLTIEYD 119
S H P+ ++ +
Sbjct: 248 SDHAPVVVDLE 258
>gi|212710738|ref|ZP_03318866.1| hypothetical protein PROVALCAL_01806 [Providencia alcalifaciens DSM
30120]
gi|212686435|gb|EEB45963.1| hypothetical protein PROVALCAL_01806 [Providencia alcalifaciens DSM
30120]
Length = 270
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/141 (12%), Positives = 32/141 (22%), Gaps = 25/141 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
L+ + +I GD N + + +
Sbjct: 130 RDLQDYVTSTQTADSQLLIMGDMNISPTDLDIGIGDVNRKRWLKTGKCSFLPEEREWLER 189
Query: 45 KMDPDGLLIRFPQE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + Q + R+K D + D + +
Sbjct: 190 LLGWGLVDTYREQHPDTTDRYSWFDYRSKGFDDNRGLRIDLLLASKKLASRCRATGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYDFEK 122
K S H P+ E+D K
Sbjct: 250 IRGMEKPSDHAPVWAEFDLTK 270
>gi|295395722|ref|ZP_06805913.1| exodeoxyribonuclease III [Brevibacterium mcbrellneri ATCC 49030]
gi|294971422|gb|EFG47306.1| exodeoxyribonuclease III [Brevibacterium mcbrellneri ATCC 49030]
Length = 261
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 36/135 (26%), Gaps = 21/135 (15%)
Query: 7 EWLKKWADQ---KIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QK 45
EWL + ++ +++ +PFV+ GDFN D
Sbjct: 127 EWLAQLRNEALVRLEQDVPFVMCGDFNVAPLDEDVWDMAAFEGATHVSQPERDAFNGLIS 186
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ +F + + D + + + +
Sbjct: 187 AGLTEVTRQFTPGPGVYTFWDYQQLRFPKKQGMRIDFQLASPSLAERATGAFIDREERKG 246
Query: 106 SKLSTHCPLTIEYDF 120
S H P+ ++Y
Sbjct: 247 KGASDHAPVWVDYQL 261
>gi|58040215|ref|YP_192179.1| hypothetical protein GOX1784 [Gluconobacter oxydans 621H]
gi|58002629|gb|AAW61523.1| Hypothetical protein GOX1784 [Gluconobacter oxydans 621H]
Length = 280
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 9/120 (7%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L QQ ++ W ++ G + + GDFNR++ D Q+++ + + K S
Sbjct: 170 LYQQVRIMQDWMLERQDEGEVYAVLGDFNRRLT---LHDPLMQQIEAETPVTLTTAGKAS 226
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
C + +D+ ++ +++L+ +S +++Y + LS HCP+++ +
Sbjct: 227 PCW---GGEYFIDHILLGNAARDWLVPDSLRVMTYKNDTVPAG---LSDHCPVSVRLEMP 280
>gi|261251117|ref|ZP_05943691.1| metal-dependent hydrolase [Vibrio orientalis CIP 102891]
gi|260937990|gb|EEX93978.1| metal-dependent hydrolase [Vibrio orientalis CIP 102891]
Length = 292
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L QG+ L KW ++ K +VI GDFN ++ G D W+ + + ++
Sbjct: 175 LKVQGQQLNKWIKEREKNNDAYVILGDFNHNLSYNG--DWLWKGISQGTDATLATKMTKA 232
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---SKLSTHCPLTIEY 118
C V RN + + + ++ + S Q+ ++S HCP+++
Sbjct: 233 NCKVKSRNNPNKTHQFKSL-IDHIIVSSDLGFHSPKQNLYKVDDVLNRQMSDHCPISVSI 291
>gi|254475570|ref|ZP_05088956.1| exodeoxyribonuclease III [Ruegeria sp. R11]
gi|214029813|gb|EEB70648.1| exodeoxyribonuclease III [Ruegeria sp. R11]
Length = 268
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 39/132 (29%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E ++ A + +P ++AGD+N + F + ++
Sbjct: 136 MERMRARAQALLDEEMPALMAGDYNIIPQAEDAKKPEAWLEDALHRTESRAAFQRIVNLG 195
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSK 107
+ + ++ +FL+ + ++ R K
Sbjct: 196 FTEAFRARHQGPGHYSFWDYQAGAWQRNNGIRIDHFLLSPQAADLMLDCQIDKDVRGRDK 255
Query: 108 LSTHCPLTIEYD 119
S H P+ +E D
Sbjct: 256 PSDHVPVWVELD 267
>gi|224584182|ref|YP_002637980.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|224468709|gb|ACN46539.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 268
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKCNNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMSR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + ++ R+K +D + D +
Sbjct: 190 LLKWGLVDTFRQANPQTMDKFSWFDYRSKGFVDNRGLRIDLLLASAPLAERCAETGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|254509791|ref|ZP_05121858.1| exodeoxyribonuclease III [Rhodobacteraceae bacterium KLH11]
gi|221533502|gb|EEE36490.1| exodeoxyribonuclease III [Rhodobacteraceae bacterium KLH11]
Length = 259
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E L A + P ++AGD+N + + + ++
Sbjct: 127 MERLYDRARALLAAEEPALMAGDYNIIPQAEDAKRPNAWREDALFRPESRAAYRKILNLG 186
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + ++ +FL+ + + K
Sbjct: 187 FTEAFRARTQGPGHYSFWDYQAGAWNKNDGIRIDHFLLTPQTADLMRDCRIDSEVRGHEK 246
Query: 108 LSTHCPLTIEYDF 120
S H P+ I+ D
Sbjct: 247 PSDHVPVWIDLDL 259
>gi|237731238|ref|ZP_04561719.1| exonuclease III [Citrobacter sp. 30_2]
gi|226906777|gb|EEH92695.1| exonuclease III [Citrobacter sp. 30_2]
Length = 272
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 34/138 (24%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 134 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 193
Query: 45 KMDPDGLLIRFPQEK---ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + + R+K D + D +
Sbjct: 194 LLGWGLVDTYRHANPEKNDQFSWFDYRSKGFDDNRGLRIDLLLASNPLAERCEETGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ ++
Sbjct: 254 IRSMEKPSDHAPVWAKFR 271
>gi|323703101|ref|ZP_08114756.1| exodeoxyribonuclease III [Desulfotomaculum nigrificans DSM 574]
gi|323531995|gb|EGB21879.1| exodeoxyribonuclease III [Desulfotomaculum nigrificans DSM 574]
Length = 262
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 32/134 (23%), Gaps = 19/134 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ L+ + + P + GDFN I D ++
Sbjct: 127 KALRDYFARNFSAHQPLLWMGDFNVAPEPIDVHDPKRLLGHVGFHPEEHKVLNYVKEWGF 186
Query: 49 DGLLIRFPQEKESTCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + E R + D+ + + R +K
Sbjct: 187 QDVFRKHQPEGGHFTFWDYRIRQGLARNLGWRIDHIWATAPLAEKSTNAWIDIEPRRLAK 246
Query: 108 LSTHCPLTIEYDFE 121
S H + E+
Sbjct: 247 PSDHTFILAEFALS 260
>gi|296313346|ref|ZP_06863287.1| exodeoxyribonuclease III [Neisseria polysaccharea ATCC 43768]
gi|296840163|gb|EFH24101.1| exodeoxyribonuclease III [Neisseria polysaccharea ATCC 43768]
Length = 256
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 36/137 (26%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D ++Q +
Sbjct: 120 KEQWFAALTEFVRDEMTRYGKLVLLGDFNIAPADADCYDPEKWYEKIHCSSVERQWFQNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + + +
Sbjct: 180 LDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVTSEMAAVLKDVRVDLDTR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+ E+D
Sbjct: 240 ALERPSDHAPVAAEFDL 256
>gi|320086216|emb|CBY95990.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
Length = 292
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 154 QNLQNYLETELKCDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMSR 213
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + ++ R+K +D + D +
Sbjct: 214 LLKWGLVDTFREANPQTMDKFSWFDYRSKGFVDNRGLRIDLLLASAPLAERCAETGIDYD 273
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 274 IRSMEKPSDHAPVWATFR 291
>gi|254716967|ref|ZP_05178778.1| Exodeoxyribonuclease III [Brucella ceti M13/05/1]
Length = 191
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N + + F + +
Sbjct: 59 MQRLENWAKKRLTLEEPLVLAGDYNVIPEPVDARNPQAWLGDALFQPQSRQAFRRLENLG 118
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
ES ++ + ++ +S + K
Sbjct: 119 FTDAIRASTDESGVYSFWDYQAGAWQKNNGIRIDHLMLSPEATNRFISANIEKHVRAWEK 178
Query: 108 LSTHCPLTIEY 118
S H P+T+
Sbjct: 179 PSDHVPVTVTL 189
>gi|161503598|ref|YP_001570710.1| exonuclease III [Salmonella enterica subsp. arizonae serovar
62:z4,z23:-- str. RSK2980]
gi|160864945|gb|ABX21568.1| hypothetical protein SARI_01677 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 268
Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKCDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMSR 189
Query: 45 KM--DPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + E + R+K +D + D +
Sbjct: 190 LLKWGLVDTFRQANPETVDKFSWFDYRSKGFVDNRGLRIDLLLASRPLAERCAETGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|326538608|gb|ADZ86823.1| exodeoxyribonuclease III Xth [Brucella melitensis M5-90]
Length = 198
Score = 72.2 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N + + F + +
Sbjct: 66 MQRLENWAKKRLTLEEPLVLAGDYNVIPEPVDARNPQAWLGDALFQPQSRQAFRRLENLG 125
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
ES ++ + ++ +S + K
Sbjct: 126 FTDAIRASTDESGVYSFWDYQAGAWQKNNGIRIDHLMLSPEATNRFISANIEKHVRAWEK 185
Query: 108 LSTHCPLTIEY 118
S H P+T+
Sbjct: 186 PSDHVPVTVTL 196
>gi|302557371|ref|ZP_07309713.1| exodeoxyribonuclease III [Streptomyces griseoflavus Tu4000]
gi|302474989|gb|EFL38082.1| exodeoxyribonuclease III [Streptomyces griseoflavus Tu4000]
Length = 259
Score = 72.2 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGL 51
E L G PF + GD+N D + GL
Sbjct: 128 EALTAAVSGDAAGGRPFAVLGDYNVAPTDDDVYDRSAFEGSTHVTPAERAALASLREAGL 187
Query: 52 LIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
P+ + R + D + ++ + +
Sbjct: 188 SDVVPRPLKYEHPYTYWDYRQLCFPKNRGMRIDLVYGNAPFAKAVTDSYVDREERKGKGA 247
Query: 109 STHCPLTIEYD 119
S H P+ ++ D
Sbjct: 248 SDHAPVVVDLD 258
>gi|258653319|ref|YP_003202475.1| exodeoxyribonuclease III Xth [Nakamurella multipartita DSM 44233]
gi|258556544|gb|ACV79486.1| exodeoxyribonuclease III Xth [Nakamurella multipartita DSM 44233]
Length = 264
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 20/130 (15%)
Query: 9 LKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
L+ +A +++ + +P ++ GDFN + + G
Sbjct: 132 LRDYAAKQLADEPHLPMLLCGDFNIAPTDDDIWSVEYYQGSTHVTGPERQAFANLTDAGF 191
Query: 52 LIR---FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F S + D + + + +
Sbjct: 192 TDVVRPFHPGPGVYTYWDYTRLSFPKRRGMRIDFALASPALAARVTDAQIDREERKGKGS 251
Query: 109 STHCPLTIEY 118
S H P+ +E+
Sbjct: 252 SDHAPVIVEF 261
>gi|16760593|ref|NP_456210.1| exonuclease III [Salmonella enterica subsp. enterica serovar Typhi
str. CT18]
gi|16764653|ref|NP_460268.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|29141647|ref|NP_804989.1| exonuclease III [Salmonella enterica subsp. enterica serovar Typhi
str. Ty2]
gi|56413712|ref|YP_150787.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|161614297|ref|YP_001588262.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|167552346|ref|ZP_02346099.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167991882|ref|ZP_02572981.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168233217|ref|ZP_02658275.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168238968|ref|ZP_02664026.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|168244409|ref|ZP_02669341.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168263883|ref|ZP_02685856.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|194446222|ref|YP_002040559.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194449710|ref|YP_002045308.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194471225|ref|ZP_03077209.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194733972|ref|YP_002114319.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197250009|ref|YP_002146737.1| exonuclease III [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|197264133|ref|ZP_03164207.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197362635|ref|YP_002142272.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|198244728|ref|YP_002215824.1| exonuclease III [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
gi|200389740|ref|ZP_03216351.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204927863|ref|ZP_03219064.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|213023056|ref|ZP_03337503.1| exonuclease III [Salmonella enterica subsp. enterica serovar Typhi
str. 404ty]
gi|213162974|ref|ZP_03348684.1| exonuclease III [Salmonella enterica subsp. enterica serovar Typhi
str. E00-7866]
gi|213427783|ref|ZP_03360533.1| exonuclease III [Salmonella enterica subsp. enterica serovar Typhi
str. E02-1180]
gi|213581312|ref|ZP_03363138.1| exonuclease III [Salmonella enterica subsp. enterica serovar Typhi
str. E98-0664]
gi|213612544|ref|ZP_03370370.1| exonuclease III [Salmonella enterica subsp. enterica serovar Typhi
str. E98-2068]
gi|213648612|ref|ZP_03378665.1| exonuclease III [Salmonella enterica subsp. enterica serovar Typhi
str. J185]
gi|213850398|ref|ZP_03381296.1| exonuclease III [Salmonella enterica subsp. enterica serovar Typhi
str. M223]
gi|60392242|sp|P0A1A9|EX3_SALTY RecName: Full=Exodeoxyribonuclease III; Short=EXO III;
Short=Exonuclease III; AltName: Full=AP endonuclease VI
gi|60392243|sp|P0A1B0|EX3_SALTI RecName: Full=Exodeoxyribonuclease III; Short=EXO III;
Short=Exonuclease III; AltName: Full=AP endonuclease VI
gi|25289127|pir||AC0710 exodeoxyribonuclease III (EC 3.1.11.2) [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|4324669|gb|AAD16979.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|16419819|gb|AAL20227.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16502889|emb|CAD02052.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29137275|gb|AAO68838.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56127969|gb|AAV77475.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161363661|gb|ABX67429.1| hypothetical protein SPAB_02042 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194404885|gb|ACF65107.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194408014|gb|ACF68233.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194457589|gb|EDX46428.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194709474|gb|ACF88695.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197094112|emb|CAR59612.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197213712|gb|ACH51109.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197242388|gb|EDY25008.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197288283|gb|EDY27668.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|197939244|gb|ACH76577.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199602185|gb|EDZ00731.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204323205|gb|EDZ08401.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205323022|gb|EDZ10861.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205329685|gb|EDZ16449.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205332615|gb|EDZ19379.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205336751|gb|EDZ23515.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205347536|gb|EDZ34167.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|261246511|emb|CBG24321.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267993174|gb|ACY88059.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301157839|emb|CBW17333.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312912288|dbj|BAJ36262.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|321223927|gb|EFX48990.1| Exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322616690|gb|EFY13599.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322619793|gb|EFY16667.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322622362|gb|EFY19207.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322627886|gb|EFY24676.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322633016|gb|EFY29759.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322636738|gb|EFY33441.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322641236|gb|EFY37877.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322645225|gb|EFY41754.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322650167|gb|EFY46581.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
gi|322655740|gb|EFY52042.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322660066|gb|EFY56305.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322665367|gb|EFY61555.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322669646|gb|EFY65793.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322673551|gb|EFY69653.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322677477|gb|EFY73541.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322679858|gb|EFY75897.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322687330|gb|EFY83302.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|323129573|gb|ADX17003.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|323192448|gb|EFZ77678.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323198697|gb|EFZ83798.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323204125|gb|EFZ89139.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323208743|gb|EFZ93681.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323210257|gb|EFZ95156.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323217719|gb|EGA02434.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323220274|gb|EGA04729.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
gi|323227561|gb|EGA11719.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323229522|gb|EGA13645.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323232745|gb|EGA16841.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323240216|gb|EGA24260.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323242796|gb|EGA26817.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323249113|gb|EGA33032.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323254387|gb|EGA38204.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323257176|gb|EGA40879.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323263503|gb|EGA47031.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323267084|gb|EGA50569.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323271592|gb|EGA55013.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|326623571|gb|EGE29916.1| exonuclease III [Salmonella enterica subsp. enterica serovar Dublin
str. 3246]
gi|332988190|gb|AEF07173.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 268
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKCDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMSR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + ++ R+K +D + D +
Sbjct: 190 LLKWGLVDTFRQANPQTMDKFSWFDYRSKGFVDNRGLRIDLLLASAPLAERCAETGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|270262158|ref|ZP_06190430.1| exodeoxyribonuclease III [Serratia odorifera 4Rx13]
gi|270044034|gb|EFA17126.1| exodeoxyribonuclease III [Serratia odorifera 4Rx13]
Length = 268
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 13/139 (9%), Positives = 35/139 (25%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + +Q++ P ++ GD N + + +
Sbjct: 130 QDLQNYLEQQLSVESPVLVMGDVNISPSDYDIGIGEESRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
++ + R++ + + D + +
Sbjct: 190 LLNWGLVDTYRHANPGRNDEFSWFDYRSRGFDENRGLRIDLLLASTPLAARCTATGIDYQ 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 250 IRGMEKPSDHAPVWAEFSL 268
>gi|269119015|ref|YP_003307192.1| exodeoxyribonuclease III Xth [Sebaldella termitidis ATCC 33386]
gi|268612893|gb|ACZ07261.1| exodeoxyribonuclease III Xth [Sebaldella termitidis ATCC 33386]
Length = 255
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 36/132 (27%), Gaps = 22/132 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMD 47
+ + + +++ K+G +I GD+N I + +
Sbjct: 125 CDEILNYLEERKKSGKAVIITGDYNIAHKPIDLARPKDNEENPGYLPEEREWMTKFIEAG 184
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+F E+ R ++ F I+ +
Sbjct: 185 YVDSFRKFYPEEVKYTWWSYRTRAREKNIGW--RIDYFCINKESEGIL--IDSGIRNDVF 240
Query: 108 LSTHCPLTIEYD 119
S HCP+ I+
Sbjct: 241 GSDHCPIYIDIS 252
>gi|86138642|ref|ZP_01057215.1| exodeoxyribonuclease III [Roseobacter sp. MED193]
gi|85824702|gb|EAQ44904.1| exodeoxyribonuclease III [Roseobacter sp. MED193]
Length = 268
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 39/133 (29%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E L A +++ +P ++AGD+N + + + ++
Sbjct: 136 MERLHARAQDLLESEMPALMAGDYNIIPQAEDAKRPEAWREDALHRPESRAAYQRIVNLG 195
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + ++ +FL+ + + R K
Sbjct: 196 FTEAFRARHQGPGHYSFWDYQAGAWNRDDGIRIDHFLLSPQAADLLQDCQIDKEIRGRDK 255
Query: 108 LSTHCPLTIEYDF 120
S H P+ ++ D
Sbjct: 256 PSDHVPIWVDLDL 268
>gi|150396373|ref|YP_001326840.1| exodeoxyribonuclease III Xth [Sinorhizobium medicae WSM419]
gi|150027888|gb|ABR60005.1| exodeoxyribonuclease III Xth [Sinorhizobium medicae WSM419]
Length = 263
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 18/134 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
L +A+Q++ P ++AGD+N D + +
Sbjct: 128 MRRLAAFAEQRLMLEEPLILAGDYNVIPEPHDCWDVKVWRNDALYLPETRAAFRRLRNLG 187
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ E + I D+ + + +VS K
Sbjct: 188 FTDAVRATSDEAPLYSFWDYQAGCWPKNLGIRIDHLMLSPEAADKLVSTSIEKHVRSWEK 247
Query: 108 LSTHCPLTIEYDFE 121
S H P+T E+ FE
Sbjct: 248 PSDHVPVTAEFAFE 261
>gi|260463071|ref|ZP_05811274.1| exodeoxyribonuclease III Xth [Mesorhizobium opportunistum WSM2075]
gi|259031192|gb|EEW32465.1| exodeoxyribonuclease III Xth [Mesorhizobium opportunistum WSM2075]
Length = 256
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 34/129 (26%), Gaps = 18/129 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGL 51
E L A+Q I TG+P V+AGD+N + + G
Sbjct: 126 ERLNAHAEQLIDTGLPVVLAGDYNIVPEPRDIYATRSYDDNALVQPESRAAFAALLEQGW 185
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ R + D+ + + +
Sbjct: 186 TDALRKKHPNETLYTFWDYRRNRWPRDAGLRLDHILLSKTLARRLKGAGIDRDVRGQDGA 245
Query: 109 STHCPLTIE 117
S H P+ +E
Sbjct: 246 SDHAPVWVE 254
>gi|114771793|ref|ZP_01449186.1| exodeoxyribonuclease III [alpha proteobacterium HTCC2255]
gi|114547609|gb|EAU50500.1| exodeoxyribonuclease III [alpha proteobacterium HTCC2255]
Length = 260
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPD 49
+ L + IK PF++AGDFN + D + + ++
Sbjct: 128 MKRLYERTCALIKLEEPFLLAGDFNIIPQAEDCWDTKVWESDAAYLPESRAAYRKILNLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ K + ++ +FL+ +S + + R K
Sbjct: 188 LTDAFRVKNKSAMNYTFWDYQAGAWNKNNGIRIDHFLLSSSCADILIDCQSDRECRARDK 247
Query: 108 LSTHCPLTIEYD 119
S H P+ +E D
Sbjct: 248 PSDHVPVWVELD 259
>gi|326790354|ref|YP_004308175.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
gi|326541118|gb|ADZ82977.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
Length = 251
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 34/132 (25%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ K + + ++ P +I GD N I + + +
Sbjct: 124 DAFKAYLKK-LEENKPVIICGDLNVAHQEIDLKNPKTNRGNAGFSDEERGKFGELLEAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + + R K+ D +V
Sbjct: 183 IDTFRYFYPDLEGAYSWWSYRFKAREKNTGWRIDYFLASEVLKDKLVGAAIDAEILG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ +E +
Sbjct: 240 -SDHCPVILEIN 250
>gi|205352972|ref|YP_002226773.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207857189|ref|YP_002243840.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|205272753|emb|CAR37670.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206708992|emb|CAR33322.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326628046|gb|EGE34389.1| exonuclease III [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
Length = 268
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKCDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMSR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + ++ R+K +D + D +
Sbjct: 190 LLKWGLVDTFRQANPQTMDKFSWFDYRSKGFVDNRGLRIDLLLASAPLAERCAETGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|256372492|ref|YP_003110316.1| exodeoxyribonuclease III Xth [Acidimicrobium ferrooxidans DSM
10331]
gi|256009076|gb|ACU54643.1| exodeoxyribonuclease III Xth [Acidimicrobium ferrooxidans DSM
10331]
Length = 258
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 34/128 (26%), Gaps = 20/128 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPDG 50
L+ + G V+ GDFN + D +
Sbjct: 132 LRAHLADLVADG--VVVGGDFNVAPSDHDVWDPSALEGATHVSLPERRALDALLGLGLTD 189
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + R + + D D + ++V+ D R + S
Sbjct: 190 VYRALHPDDPGFTWWDYRQGAFRRGMGMRIDLVLASEDIARNVVAVDVDIEARRAPRPSD 249
Query: 111 HCPLTIEY 118
H PL ++
Sbjct: 250 HAPLVVDL 257
>gi|254670248|emb|CBA05478.1| exodeoxyribonuclease III [Neisseria meningitidis alpha153]
Length = 256
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 37/137 (27%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D +++ +
Sbjct: 120 KEQWFAALTEFVRDEMTRYGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFKNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + ++
Sbjct: 180 LDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLETR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+ E+D+
Sbjct: 240 ALERPSDHAPVAAEFDW 256
>gi|262203673|ref|YP_003274881.1| exodeoxyribonuclease III Xth [Gordonia bronchialis DSM 43247]
gi|262087020|gb|ACY22988.1| exodeoxyribonuclease III Xth [Gordonia bronchialis DSM 43247]
Length = 293
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 32/130 (24%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
WL + I ++ GD N D + ++
Sbjct: 131 WLAA-LAKSISEPSSTLLCGDMNIAPADADVFDPDAYVGHTHVTEPERAALSAFAELGLH 189
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ + R + D + + + + +K S
Sbjct: 190 DVVRDRWPDSRVFSYWDYRAGMFHKDLGMRIDLILAGESATDRVAAAWVDRKARKGTKPS 249
Query: 110 THCPLTIEYD 119
H P+ ++ D
Sbjct: 250 DHAPVIVDLD 259
>gi|68171888|ref|ZP_00545213.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Ehrlichia
chaffeensis str. Sapulpa]
gi|67998687|gb|EAM85414.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Ehrlichia
chaffeensis str. Sapulpa]
Length = 281
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 35/134 (26%), Gaps = 18/134 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQ---KMDP 48
+ L++ +K ++ GD+N I D ++ +
Sbjct: 148 DQLREHVLSLLKKEEILILGGDYNVAPYPIDVYDPEVMDGKLCFHKSEREKFRSILNLGF 207
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + + + DN + ++S D
Sbjct: 208 TDSFRVLNDYEKKFSWWNYKAGAWQQNRGLRIDNLLLSPQATDKLLSCVIHDKLRGLDTP 267
Query: 109 STHCPLTIEYDFEK 122
S H P+ E D
Sbjct: 268 SDHAPVVCELDLSS 281
>gi|241758932|ref|ZP_04757044.1| exodeoxyribonuclease III [Neisseria flavescens SK114]
gi|241320753|gb|EER56986.1| exodeoxyribonuclease III [Neisseria flavescens SK114]
Length = 256
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 19/136 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------W 43
+Q L ++ ++ V+ GDFN D
Sbjct: 120 KEQWFAALTEFVRNEMAAHPKLVLLGDFNIAPADADCYDPEKWHEKIHCSSIERQWFKNL 179
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ L + E R + D+ + + ++ +
Sbjct: 180 LDLGLTDGLRKIHPEGAFYTWFDYRGAMFQRKLGLRIDHILTSPELAATLTNVTVDLETR 239
Query: 104 RRSKLSTHCPLTIEYD 119
+ + S H P+ E+D
Sbjct: 240 AQERPSDHAPVIAEFD 255
>gi|42524876|ref|NP_970256.1| exodeoxyribonuclease III [Bdellovibrio bacteriovorus HD100]
gi|39577087|emb|CAE78316.1| Exodeoxyribonuclease III [Bdellovibrio bacteriovorus HD100]
Length = 285
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 37/138 (26%), Gaps = 24/138 (17%)
Query: 2 LSQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------ 42
QQ + L +K+ TG V+ GD+N +I D
Sbjct: 151 FKQQFLKDLNHHLKEKLATGRQVVVVGDYNVAHEAIDVHDPVRLSKVSGFFPEERAWFDS 210
Query: 43 WQKMDPDGLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + F E + R + + D + S D D
Sbjct: 211 FVDLGFIDTFRYFKPSEAKRYSWWDYRQMARISNRGWRIDYICVSKGLEKYLASADILDQ 270
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+ D
Sbjct: 271 VEG----SDHCPVVATLD 284
>gi|283833419|ref|ZP_06353160.1| exodeoxyribonuclease III [Citrobacter youngae ATCC 29220]
gi|291071073|gb|EFE09182.1| exodeoxyribonuclease III [Citrobacter youngae ATCC 29220]
Length = 268
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 34/138 (24%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 189
Query: 45 KMDPD--GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ EK R+K D + D +
Sbjct: 190 LLGWGLVDTYRHAWPEKNDQFSWFDYRSKGFDDNRGLRIDLLLASNPLAERCEETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ ++
Sbjct: 250 IRSMEKPSDHAPVWAKFR 267
>gi|288920812|ref|ZP_06415110.1| exodeoxyribonuclease III Xth [Frankia sp. EUN1f]
gi|288347771|gb|EFC82050.1| exodeoxyribonuclease III Xth [Frankia sp. EUN1f]
Length = 296
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 31/130 (23%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
L+ + G P + GDFN D
Sbjct: 131 ALRDVVGELAPAG-PVMTLGDFNIAPTDADVWDIAAFEGATHVTEAERAALGELHGAGLV 189
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
L+ E+ R + + D D + + + + S
Sbjct: 190 DLMRARWPEETVYTYWDYRQLCFPKNYGMRIDLALATADVAGRTRAVWVDRAARKGTGTS 249
Query: 110 THCPLTIEYD 119
H P+ ++ D
Sbjct: 250 DHAPVVVDLD 259
>gi|260777714|ref|ZP_05886607.1| hypothetical protein VIC_003111 [Vibrio coralliilyticus ATCC
BAA-450]
gi|260605727|gb|EEX32012.1| hypothetical protein VIC_003111 [Vibrio coralliilyticus ATCC
BAA-450]
Length = 296
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L QG+ L +W ++ + G + I GDFN ++ G D W+ + + +
Sbjct: 178 ILKSQGKVLNQWISERERQGQNYAILGDFNHNLSYNG--DWLWEVISHSSQAVLATKGTP 235
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR---RSKLSTHCPLTIE 117
+TC V R + + + ++ + +Q T + LS HCP++ +
Sbjct: 236 ATCKVRSRKNPNKTHQFRSL-IDHIIVSPGLTTAQTNQDVFPTSLVLQHHLSDHCPISTQ 294
Query: 118 YD 119
+
Sbjct: 295 LN 296
>gi|254437353|ref|ZP_05050847.1| exodeoxyribonuclease III [Octadecabacter antarcticus 307]
gi|198252799|gb|EDY77113.1| exodeoxyribonuclease III [Octadecabacter antarcticus 307]
Length = 266
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 39/132 (29%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINS----------------IGDTDDFWQKMDPD 49
+ LK A Q + PF++AGD+N F + ++
Sbjct: 134 MDRLKTRAQQLMALEEPFLMAGDYNIIPQPEDAARPNVWTDDALFRPDSRAAFRRLLNLG 193
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ S ++ +FL+ N + + R K
Sbjct: 194 LTEAFRACHQGSGHYSFWDYQAGAWDKNDGIRIDHFLLSNQCADLLKDAWIESGVRGREK 253
Query: 108 LSTHCPLTIEYD 119
S H P+ +E D
Sbjct: 254 PSDHVPVWVELD 265
>gi|289829520|ref|ZP_06547122.1| exonuclease III [Salmonella enterica subsp. enterica serovar Typhi
str. E98-3139]
Length = 228
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 90 QNLQNYLETELKCDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMSR 149
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + ++ R+K +D + D +
Sbjct: 150 LLKWGLVDTFRQANPQTMDKFSWFDYRSKGFVDNRGLRIDLLLASAPLAERCAETGIDYD 209
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 210 IRSMEKPSDHAPVWATFR 227
>gi|261880757|ref|ZP_06007184.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
gi|270332533|gb|EFA43319.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
Length = 267
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 31/132 (23%), Gaps = 23/132 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + ++ P ++ GD N I + + +
Sbjct: 141 EDFRAYIK-RLNETKPVIVCGDLNVAHQEIDIKNAKTNRNNAGFTDEEREKMTILLDNGF 199
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
E+ R ++ D IV
Sbjct: 200 IDTFRTMYPEQVIYSWWSYRFRARERNTGWRIDYFLVSERLRNQIVDARIHTEIYG---- 255
Query: 109 STHCPLTIEYDF 120
S HCP+ +E +
Sbjct: 256 SDHCPVELELNL 267
>gi|254468067|ref|ZP_05081473.1| exodeoxyribonuclease III [beta proteobacterium KB13]
gi|207086877|gb|EDZ64160.1| exodeoxyribonuclease III [beta proteobacterium KB13]
Length = 256
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
W+ ++ GDFN + I D + +
Sbjct: 126 WVNALLKFIKTKNSDSLLMGDFNIAPDDIDCHDPEKWVGTVLTSDIERNLFKEIIECNFT 185
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + R + + D+ D + + + + S
Sbjct: 186 DTHRYLNKNEPGFTWWDYRMAAFRRNLGLRIDHILASHDLINFLKDFSVLSDYRKLERPS 245
Query: 110 THCPLTIEYDF 120
H P+ + +F
Sbjct: 246 DHAPIMLTLNF 256
>gi|168463303|ref|ZP_02697234.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168821944|ref|ZP_02833944.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|195634571|gb|EDX52923.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|205341658|gb|EDZ28422.1| exodeoxyribonuclease III [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
Length = 268
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 130 QNLQNYLETELKCDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMSR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + ++ R+K +D + D +
Sbjct: 190 LLKWGLVDTFREANPQTMDKFSWFDYRSKGFVDNRGLRIDLLLASAPLAERCAETGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWATFR 267
>gi|326775686|ref|ZP_08234951.1| exodeoxyribonuclease III Xth [Streptomyces cf. griseus XylebKG-1]
gi|326656019|gb|EGE40865.1| exodeoxyribonuclease III Xth [Streptomyces cf. griseus XylebKG-1]
Length = 259
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW---------------QKMDPDGL 51
E L+K +PF + GDFN D ++ +GL
Sbjct: 128 EALRKAVAADAAKALPFAVLGDFNVAPTDEDVWDPALFEGATHVTPAERVALAALEAEGL 187
Query: 52 LIRFPQEKE---STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
P+ + + R + D + ++ + +
Sbjct: 188 SEVHPRPLKYDRAYTFWDYRELRFPKNKGMRIDLTFGNAPFTAAVKDSYVDREERKGKGA 247
Query: 109 STHCPLTIEYDF 120
S H P+ ++ D
Sbjct: 248 SDHAPVVVDLDL 259
>gi|300938914|ref|ZP_07153616.1| exodeoxyribonuclease III [Escherichia coli MS 21-1]
gi|300456174|gb|EFK19667.1| exodeoxyribonuclease III [Escherichia coli MS 21-1]
Length = 272
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 134 QNLQNYLETELKRENPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMER 193
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + ++ R+K D + D + V
Sbjct: 194 LMSWGLVDTFRHANPQTADRFSWFDYRSKVFDDNRGLRIDLLLASQPLAECCVETGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 254 IRSMEKPSDHAPVWATFR 271
>gi|255535312|ref|YP_003095683.1| Exodeoxyribonuclease III [Flavobacteriaceae bacterium 3519-10]
gi|255341508|gb|ACU07621.1| Exodeoxyribonuclease III [Flavobacteriaceae bacterium 3519-10]
Length = 301
Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 31/130 (23%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLL 52
L A+ I +G ++ GDFN + + G
Sbjct: 172 RLDAHAEMLITSGKKVLLIGDFNVMPTEKDVYKPEKYINDALFHPDVQAAFHNLTEQGWT 231
Query: 53 ---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ + + D+ + + K S
Sbjct: 232 DAIRYLYPDETIYTFWDYFRNAYQRNAGMRIDHFLLSAEVLPQLKKAGVDTDVRGWEKSS 291
Query: 110 THCPLTIEYD 119
H P+ IE +
Sbjct: 292 DHGPVWIELE 301
>gi|16119275|ref|NP_395981.1| exodeoxyribonuclease III [Agrobacterium tumefaciens str. C58]
gi|15161781|gb|AAK90422.1| exodeoxyribonuclease III [Agrobacterium tumefaciens str. C58]
Length = 258
Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
E L +A + + +P + GDFN + M
Sbjct: 126 ERLYSYAAELFELDVPVALVGDFNVMPTDLDVYKPERWRDDALFRPEVRAAYAELIAMGW 185
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ E+ + + D+ + +
Sbjct: 186 TDAVRLLHPEERIYTFWKYFRNAFARDAGLRIDHFLLSPSLRERLQTCGVDKFARAWEHT 245
Query: 109 STHCPLTIEYD 119
S H P+ IE D
Sbjct: 246 SDHAPVWIELD 256
>gi|326384218|ref|ZP_08205900.1| exodeoxyribonuclease III Xth [Gordonia neofelifaecis NRRL B-59395]
gi|326197083|gb|EGD54275.1| exodeoxyribonuclease III Xth [Gordonia neofelifaecis NRRL B-59395]
Length = 294
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 33/130 (25%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
WL+K VI GD+N D + +
Sbjct: 132 WLEKLRLAVEPDADTTVICGDYNIIPTDADCFDPEAFVGHTHVTPAEREAFEALKALGLH 191
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ +K+ R + D + + + +K S
Sbjct: 192 DVMRDHWPDKQIYTYWDYRAGMFHKDLGMRIDFLLAGGSVAERAKASWVDRQARKGTKPS 251
Query: 110 THCPLTIEYD 119
H P+ ++ D
Sbjct: 252 DHAPVFLDLD 261
>gi|83952174|ref|ZP_00960906.1| exodeoxyribonuclease III [Roseovarius nubinhibens ISM]
gi|83837180|gb|EAP76477.1| exodeoxyribonuclease III [Roseovarius nubinhibens ISM]
Length = 260
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 35/132 (26%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------QKMDPD 49
E L+ A+ + PF++AGD+N + ++
Sbjct: 128 MERLQARAEALLALEEPFLMAGDYNIIPQDEDAKRPEAWREDALALPQSRAAYRRIVNLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQSDLDTRRSK 107
+ + ++ +FL+ + + K
Sbjct: 188 LTEAFRARTQGPGHYTFWDYQAGAWNRDDGIRIDHFLLSPQCADRLTDCQIDKHVRGGDK 247
Query: 108 LSTHCPLTIEYD 119
S H P+ I D
Sbjct: 248 PSDHVPIWITLD 259
>gi|157370955|ref|YP_001478944.1| exonuclease III [Serratia proteamaculans 568]
gi|157322719|gb|ABV41816.1| exodeoxyribonuclease III [Serratia proteamaculans 568]
Length = 268
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 36/139 (25%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + +Q++ P ++ GD N + + +
Sbjct: 130 QDLQNYLEQQMSVDSPVLVMGDVNISPSDYDIGIGEESRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M+ + E R++ + + D + +
Sbjct: 190 LMNWGLVDTYRHANPERNDQFSWFDYRSRGFDENRGLRIDLLLASTPLAARCTATGIDYQ 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 250 IRGMEKPSDHAPVWAEFSL 268
>gi|262195540|ref|YP_003266749.1| endonuclease/exonuclease/phosphatase [Haliangium ochraceum DSM
14365]
gi|262078887|gb|ACY14856.1| Endonuclease/exonuclease/phosphatase [Haliangium ochraceum DSM
14365]
Length = 406
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR---FPQE 58
LS+Q L+ W D + + G+PF + GDFNR++N+ D W+++D E
Sbjct: 188 LSRQLPQLEGWIDARAREGVPFAVLGDFNRRMNA---RDALWREIDDAEPAAADLTLVTE 244
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + +D+ +D +L+ NSF + Y SD R+ LS HCP+++
Sbjct: 245 GQRSRCWKGKYPRFIDHIALDLHASAWLVPNSFEQLVYSDSDTAHARA-LSDHCPISVRL 303
Query: 119 D 119
Sbjct: 304 R 304
>gi|227820280|ref|YP_002824251.1| exonuclease [Sinorhizobium fredii NGR234]
gi|227339279|gb|ACP23498.1| probable exonuclease [Sinorhizobium fredii NGR234]
Length = 257
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGL 51
L A + ++TG+P V+AGD+N ++++ G
Sbjct: 126 RRLAGHAAELLETGLPVVLAGDYNIVPEPRDIYPTRSYDDNALVQPESRAAFRQLLDQGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
L + ++E R + D+ + + +
Sbjct: 186 LDALRKVYPDEELFTFWDYRRNRWQRNAGLRLDHILLSRKLARRLTGGGIDRDVRGQENA 245
Query: 109 STHCPLTIEYD 119
S H P+ I +
Sbjct: 246 SDHAPVWIALE 256
>gi|209964343|ref|YP_002297258.1| exodeoxyribonuclease III [Rhodospirillum centenum SW]
gi|209957809|gb|ACI98445.1| exodeoxyribonuclease III [Rhodospirillum centenum SW]
Length = 257
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 34/132 (25%), Gaps = 19/132 (14%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKM 46
E LK + + +PFV+ GD+N D
Sbjct: 124 MERLKAHVGELLAREVPFVLGGDYNVIPAPEDVYDPEGWSGDALFRRETREKFREILNLG 183
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ P + + + + + D+ + + +
Sbjct: 184 LTEAFRALHPAARHAYTFWDYQAGAWPRDLGLRIDHFLLSPQAADRLAGCTIDRSPRGQE 243
Query: 107 KLSTHCPLTIEY 118
K S H P+ ++
Sbjct: 244 KASDHTPVLLDL 255
>gi|163759458|ref|ZP_02166543.1| exodeoxyribonuclease III [Hoeflea phototrophica DFL-43]
gi|162283055|gb|EDQ33341.1| exodeoxyribonuclease III [Hoeflea phototrophica DFL-43]
Length = 260
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 37/133 (27%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E L+ +A+ ++ P V+AGD+N + + F + +
Sbjct: 128 MERLQAFAEDRLALEEPLVLAGDYNVIPEPVDCHNPKAWEGDALFRPESRTAFRRLENLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--YDQSDLDTRRSK 107
++ ++ + ++ + + K
Sbjct: 188 FTDALRSANDQAETYTFWDYQAGAWPKNNGIRIDHLMLSPEAADNLEWANVEKHVRGWEK 247
Query: 108 LSTHCPLTIEYDF 120
S H P+ I F
Sbjct: 248 PSDHVPVAISLGF 260
>gi|254469887|ref|ZP_05083292.1| exodeoxyribonuclease III [Pseudovibrio sp. JE062]
gi|211961722|gb|EEA96917.1| exodeoxyribonuclease III [Pseudovibrio sp. JE062]
Length = 260
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 34/132 (25%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L K A+++++ F++ GD+N F ++
Sbjct: 128 MDRLHKHAEKQLEKEEAFLLVGDYNVIPEPEDAKKPEAWVGDALFRPESRQRFRALLNLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ ++ + L+ + + K
Sbjct: 188 FTEAVRATNSNAGTYTFWDYQAGAWQRDNGIRIDHLLLSPEAARIMQGVGIDKHVRGWEK 247
Query: 108 LSTHCPLTIEYD 119
S H P+ +E
Sbjct: 248 PSDHVPVWVELS 259
>gi|222085777|ref|YP_002544307.1| exodeoxyribonuclease III protein [Agrobacterium radiobacter K84]
gi|221723225|gb|ACM26381.1| exodeoxyribonuclease III protein [Agrobacterium radiobacter K84]
Length = 263
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 40/134 (29%), Gaps = 18/134 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
E L+K+A ++ P ++AGD+N D +++++ G
Sbjct: 129 MERLRKFAADRLALEEPIILAGDYNVIPEPHDCFDPKVWENDALFLPQTRQAFRQLENLG 188
Query: 51 LLIRFPQEKESTC-NVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
++ ++ + ++ + S K
Sbjct: 189 FTDAVRTTTDAVKLYSFWDYQAGAWPKNNGIRIDHLMLSPEAADRLTSTAIEKHMRAWEK 248
Query: 108 LSTHCPLTIEYDFE 121
S H P+ DF+
Sbjct: 249 PSDHVPVIAHLDFQ 262
>gi|227496831|ref|ZP_03927099.1| exonuclease III [Actinomyces urogenitalis DSM 15434]
gi|226833664|gb|EEH66047.1| exonuclease III [Actinomyces urogenitalis DSM 15434]
Length = 283
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 33/133 (24%), Gaps = 17/133 (12%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKM 46
L E + W + G+P + GD+N D +
Sbjct: 153 LRTLREDVAAWLSE--DPGLPLALVGDWNVAPRDEDVWDMVAFEGATHVSSPERAAFVAF 210
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ G+ + + + D + + + +
Sbjct: 211 EQVGMEEVTRSRVTNYTYWDYQKLRFPRNEGMRIDFVYASAALAARVRDAAIDRDERKGK 270
Query: 107 KLSTHCPLTIEYD 119
S H P+ +E D
Sbjct: 271 GASDHVPVIVEID 283
>gi|154151954|ref|YP_001405572.1| exodeoxyribonuclease III Xth [Candidatus Methanoregula boonei 6A8]
gi|154000506|gb|ABS56929.1| exodeoxyribonuclease III Xth [Methanoregula boonei 6A8]
Length = 270
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ-------------------KMDPDGLL 52
+ + G ++ GDFN + + +
Sbjct: 133 YIRSLCEQGRAVIVCGDFNVAHTDKDLYNPPKKPVRQVGISPDERGRIDQLIALGFTDTF 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
F +N S F + + + K S HC
Sbjct: 193 RLFHAGPGYYTRWPFQNNSRERNFGW--RIDYCFVSQALR--PFVADATILHEIKGSDHC 248
Query: 113 PLTIEYDFEKGNV 125
P+ +E + + ++
Sbjct: 249 PVALELNLPETDM 261
>gi|323141860|ref|ZP_08076721.1| exodeoxyribonuclease III [Phascolarctobacterium sp. YIT 12067]
gi|322413607|gb|EFY04465.1| exodeoxyribonuclease III [Phascolarctobacterium sp. YIT 12067]
Length = 236
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 23/131 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ + + Q++ P V+ GD N I + +
Sbjct: 110 DVFRAYL-QELDAKKPVVVCGDLNVAAEEIDLKNPKTNRRNAGFTDEERAKFRELKAAGF 168
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
E+ R K+ F++ + + QS
Sbjct: 169 TDSFRYLHPEEVKYSWWSYRFKAREKNAGW--RIDYFVVSDRIADKL--QSAEIHNEVFG 224
Query: 109 STHCPLTIEYD 119
S HCP++IE D
Sbjct: 225 SDHCPVSIELD 235
>gi|226326255|ref|ZP_03801773.1| hypothetical protein PROPEN_00097 [Proteus penneri ATCC 35198]
gi|225205333|gb|EEG87687.1| hypothetical protein PROPEN_00097 [Proteus penneri ATCC 35198]
Length = 151
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 31/135 (22%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ + +K P +I GD N
Sbjct: 15 LQNYLTASLKPTSPVLIMGDLNISPTDKDIGIGENNMKRWLKTGKCSFLPEEREWLATLM 74
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ E + R+K D + D + + +S
Sbjct: 75 GWGLTDTFRQQHPEADDKFSWFDYRSKGFDDNRGLRIDLLLASRCLADNCISTGIDYDIR 134
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 135 GMEKPSDHAPVWAEF 149
>gi|255971866|ref|ZP_05422452.1| exonuclease III [Enterococcus faecalis T1]
gi|255962884|gb|EET95360.1| exonuclease III [Enterococcus faecalis T1]
Length = 257
Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + + ++ + P ++ GD N +I + + +
Sbjct: 119 LKRLAYRMTWEDAFRAYLNE-LNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEER 177
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 178 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 237
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 238 KIHTDILG----SDHCPVEVVLDF 257
>gi|260433435|ref|ZP_05787406.1| exodeoxyribonuclease III [Silicibacter lacuscaerulensis ITI-1157]
gi|260417263|gb|EEX10522.1| exodeoxyribonuclease III [Silicibacter lacuscaerulensis ITI-1157]
Length = 259
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E L + A + +K+ P ++AGD+N + F + ++
Sbjct: 127 MERLHQRAVELLKSEEPALMAGDYNVIPQAEDAKRPEAWREDALFRSESRAAFRRILNLG 186
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + ++ +FL+ + + + K
Sbjct: 187 FTDAFRARTQGPGHYTFWDYQAGAWNRNDGIRIDHFLLTPQAADLLQDCRIDAEVRGQEK 246
Query: 108 LSTHCPLTIEYD 119
S H P+ ++ D
Sbjct: 247 PSDHVPIWVDLD 258
>gi|253989463|ref|YP_003040819.1| exonuclease III [Photorhabdus asymbiotica subsp. asymbiotica ATCC
43949]
gi|253780913|emb|CAQ84075.1| exodeoxyribonuclease iii (exonuclease iii) (exo iii) (ap
endonucleas vi) [Photorhabdus asymbiotica]
Length = 268
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 33/138 (23%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDF-- 42
+ L+ + +Q + +I GD N + D
Sbjct: 130 QDLQSYLEQNLSPQSQVLIMGDMNISPTDLDIGIGDNNQKRWLKTGKCSFLPEERDWMDR 189
Query: 43 WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ E R+K D + D + ++
Sbjct: 190 LKDWGLVDTFRHLNPECNDQFSWFDYRSKGFDDNRGLRIDLLFASKPLAERCIATGIDYK 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ E++
Sbjct: 250 IREMEKPSDHAPVWAEFE 267
>gi|77463209|ref|YP_352713.1| exodeoxyribonuclease III [Rhodobacter sphaeroides 2.4.1]
gi|77387627|gb|ABA78812.1| Exodeoxyribonuclease III [Rhodobacter sphaeroides 2.4.1]
Length = 259
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E +K A + + T P V+AGD+N + F + ++
Sbjct: 127 MERMKARAAELLATEEPVVLAGDYNVIPQAEDAARPEVWVTDALFLPESRAAFRRIVNLG 186
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSK 107
+ ++ + L+ + + K
Sbjct: 187 YTEAFRARTFGPGHYSFWDYQAGAWEKNNGIRIDHLLLSPQAADLMTDVRIDREVRSGEK 246
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 247 PSDHVPVWVEL 257
>gi|295110263|emb|CBL24216.1| exodeoxyribonuclease III [Ruminococcus obeum A2-162]
Length = 253
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 37/138 (26%), Gaps = 25/138 (18%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
EW + + +K P + GD N I + + +
Sbjct: 120 MEWERDFLAYLLKLQEKKPVICCGDMNVAHQEIDLKNPKTNRKNAGFTDEERACFSRMLE 179
Query: 50 ----GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
F + + R K+ F++ S Q
Sbjct: 180 SGFVDTFRYFYPDKEGIYSWWSYRFKAREKNAGW--RIDYFIVSPSLK--DRLQDASIHT 235
Query: 105 RSKLSTHCPLTIEYDFEK 122
S HCP+ ++ DFEK
Sbjct: 236 EIMGSDHCPVELDIDFEK 253
>gi|84500937|ref|ZP_00999172.1| exodeoxyribonuclease III [Oceanicola batsensis HTCC2597]
gi|84391004|gb|EAQ03422.1| exodeoxyribonuclease III [Oceanicola batsensis HTCC2597]
Length = 260
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 36/131 (27%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD 49
E L++ A Q I P ++AGD+N D + + ++
Sbjct: 128 MERLRERARQLIAQEEPALMAGDYNIIPQPEDVARPDAWRDDALFRLDSRDAYRRVLNLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ ++ + L+ + + R K
Sbjct: 188 FTEAFRTRHPAPGHYSFWDYQAGAWQRNNGIRIDHILMTPQCADLMQDAGIEKELRGREK 247
Query: 108 LSTHCPLTIEY 118
S H P+ ++
Sbjct: 248 PSDHVPVWVDL 258
>gi|294815857|ref|ZP_06774500.1| Exonuclease [Streptomyces clavuligerus ATCC 27064]
gi|294328456|gb|EFG10099.1| Exonuclease [Streptomyces clavuligerus ATCC 27064]
Length = 269
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 32/130 (24%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGLL 52
LK+ PF + GD+N D + GL
Sbjct: 139 ALKEAVAADAAGPRPFAVLGDYNIAPADEDVWDRAAFEGSTHVTEPERAALAALRETGLS 198
Query: 53 IRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
P+ + R + D + ++ + + S
Sbjct: 199 DVVPRPLKYDHPFTYWDYRQLCFPKNRGMRIDLVYGNGPFAGAVKDSYVDREERKGKGAS 258
Query: 110 THCPLTIEYD 119
H P+ ++ D
Sbjct: 259 DHAPVVVDLD 268
>gi|261218771|ref|ZP_05933052.1| exodeoxyribonuclease III Xth [Brucella ceti M13/05/1]
gi|260923860|gb|EEX90428.1| exodeoxyribonuclease III Xth [Brucella ceti M13/05/1]
Length = 158
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA +++ P V+AGD+N + + F + +
Sbjct: 26 MQRLENWAKKRLTLEEPLVLAGDYNVIPEPVDARNPQAWLGDALFQPQSRQAFRRLENLG 85
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
ES ++ + ++ +S + K
Sbjct: 86 FTDAIRASTDESGVYSFWDYQAGAWQKNNGIRIDHLMLSPEATNRFISANIEKHVRAWEK 145
Query: 108 LSTHCPLTIEY 118
S H P+T+
Sbjct: 146 PSDHVPVTVTL 156
>gi|254487256|ref|ZP_05100461.1| exodeoxyribonuclease III [Roseobacter sp. GAI101]
gi|214044125|gb|EEB84763.1| exodeoxyribonuclease III [Roseobacter sp. GAI101]
Length = 260
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
L+ A + PF++ GD+N + W+K+ G
Sbjct: 128 MARLEDRARALLAEETPFLMTGDYNVIPQAEDAATPDAWRDDALFRPETRAAWRKLVALG 187
Query: 51 LLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQSDLDTRRSK 107
L F + ++ +FL+ + + R K
Sbjct: 188 LTEAFRARTQGPGHYSFWDYQAGAWNRNNGIRIDHFLLSPVVADMLRDCQIDKEIRGRDK 247
Query: 108 LSTHCPLTIEYDF 120
S H P+ ++ DF
Sbjct: 248 PSDHVPVWVDLDF 260
>gi|85703273|ref|ZP_01034377.1| exodeoxyribonuclease III [Roseovarius sp. 217]
gi|85672201|gb|EAQ27058.1| exodeoxyribonuclease III [Roseovarius sp. 217]
Length = 260
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E L+ A + + P ++ GD+N F + ++
Sbjct: 128 MERLQARARDLLASEEPVLMGGDYNIIPQDEDAARPEAWREDALALPESRAAFRRILNLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + ++ +FL+ + + R K
Sbjct: 188 FTEAFRARVQGPGHYTFWDYQAGAWNKNDGIRIDHFLLSPQAADLLTDCGIDKEIRARDK 247
Query: 108 LSTHCPLTIEYD 119
S H PL +E D
Sbjct: 248 PSDHVPLWVEID 259
>gi|332520152|ref|ZP_08396616.1| exodeoxyribonuclease III Xth [Lacinutrix algicola 5H-3-7-4]
gi|332044711|gb|EGI80905.1| exodeoxyribonuclease III Xth [Lacinutrix algicola 5H-3-7-4]
Length = 253
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 34/132 (25%), Gaps = 21/132 (15%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM-----------------DP 48
+ ++ + ++ +T VI GD+N +I + + +
Sbjct: 126 MDEIQDYVNKLRETIPNLVICGDYNICHEAIDIHNPKMKNVSGFLPVEREWIGNFIDSGL 185
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
EK R + + D I
Sbjct: 186 VDSYRYLNPEKVEYSWWSYRANARANNKGWRLDYAMVTQPLKQKIKRAVILTQAV----H 241
Query: 109 STHCPLTIEYDF 120
S HCP+ +E D
Sbjct: 242 SDHCPILLELDM 253
>gi|148653062|ref|YP_001280155.1| exonuclease III [Psychrobacter sp. PRwf-1]
gi|148572146|gb|ABQ94205.1| Exodeoxyribonuclease III [Psychrobacter sp. PRwf-1]
Length = 271
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 32/139 (23%), Gaps = 27/139 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD-------------------------TDDFW 43
L ++ D G +I GD N
Sbjct: 133 LNQYIDALKAEGRTLIIMGDMNIAPEDNDIGIGEKNAKRWLSQGKTSFLPEEREWYSALM 192
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
+ D I +P ++ R++ D + L + S
Sbjct: 193 SRELSDTYRIHYPDANDTFSWFDYRSRGFDDDPKRGLRIDHILCTQDIEDKCIDAGISYE 252
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ + F
Sbjct: 253 LRAMEKPSDHAPIWASFKF 271
>gi|86357361|ref|YP_469253.1| exodeoxyribonuclease III protein [Rhizobium etli CFN 42]
gi|86281463|gb|ABC90526.1| exodeoxyribonuclease III protein [Rhizobium etli CFN 42]
Length = 260
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 36/131 (27%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
L +A + ++ +P ++AGDFN I + ++ G
Sbjct: 126 RRLSAYAAELLEIEVPSILAGDFNVMPTEIDVYKPERWQDDALFRPEVRTAYAQLVAQGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ S + D+ + + S +
Sbjct: 186 TDAVRHLHPGERIYTFWKYWRNSFERDAGLRIDHLLLSPTVAPWLRSASVRRKPRGWEQT 245
Query: 109 STHCPLTIEYD 119
S H P+ IE +
Sbjct: 246 SDHAPVMIELE 256
>gi|255974862|ref|ZP_05425448.1| exonuclease III [Enterococcus faecalis T2]
gi|255967734|gb|EET98356.1| exonuclease III [Enterococcus faecalis T2]
Length = 257
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + + ++ + P ++ GD N I + + +
Sbjct: 119 LKRLAYRMTWEDAFRAYLNE-LNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEER 177
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 178 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 237
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 238 KIHTDILG----SDHCPVEVVLDF 257
>gi|50121263|ref|YP_050430.1| exonuclease III [Pectobacterium atrosepticum SCRI1043]
gi|49611789|emb|CAG75238.1| exodeoxyribonuclease III [Pectobacterium atrosepticum SCRI1043]
Length = 268
Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 30/139 (21%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + +Q P ++ GD N +
Sbjct: 130 QDLQTYLEQHHSATQPLIVMGDVNISATDLDIGIGEESRKRWLRTGKCSFLPEEREWMAR 189
Query: 43 WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q E R+ D + D + V+
Sbjct: 190 LQGWGLIDTFRAANPEGNDRFSWFDYRSSGFDDNRGLRIDLILASTFLAERCVATGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 250 IRGMEKPSDHAPIWAEFTL 268
>gi|256763359|ref|ZP_05503939.1| exonuclease III [Enterococcus faecalis T3]
gi|256684610|gb|EEU24305.1| exonuclease III [Enterococcus faecalis T3]
Length = 257
Score = 71.0 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + + ++ + P ++ GD N I + + +
Sbjct: 119 LKRLAYRMTWEDAFRAYLNE-LNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEER 177
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 178 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 237
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 238 KIHTDILG----SDHCPVEVVLDF 257
>gi|307329665|ref|ZP_07608823.1| exodeoxyribonuclease III Xth [Streptomyces violaceusniger Tu 4113]
gi|306884723|gb|EFN15751.1| exodeoxyribonuclease III Xth [Streptomyces violaceusniger Tu 4113]
Length = 259
Score = 71.0 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFWQKMDP 48
E L+ PF + GDFN D ++
Sbjct: 128 EALRTAVAGDAAGDRPFAVLGDFNVAPTDEDVWDRSAFDGLTHVTDLEREALAALREAGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + R + D + ++ + +
Sbjct: 188 SDVVPRPLKYDRPFTYWDYRELGFPKNRGMRIDLVYGNEVFAKAVGDAYVDREERKGKGA 247
Query: 109 STHCPLTIEYD 119
S H P+ ++ +
Sbjct: 248 SDHAPVVVDLE 258
>gi|94313832|ref|YP_587041.1| exodeoxyribonuclease III [Cupriavidus metallidurans CH34]
gi|93357684|gb|ABF11772.1| Exodeoxyribonuclease III [Cupriavidus metallidurans CH34]
Length = 283
Score = 71.0 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 33/132 (25%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E L + A +G P V+AGDFN + ++++ G
Sbjct: 129 ERLIRHASTLYASGHPVVLAGDFNVVPTDDDIYNPRSWLKDALLQPASRECYRQLLEQGW 188
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + D+ + +
Sbjct: 189 TDALRTRYPDTRIYTFWDYFRQHWQKDSGLRIDHLLLSRSLAQHMRDAGVDKWVRGEPHA 248
Query: 109 STHCPLTIEYDF 120
S H P +E +
Sbjct: 249 SDHAPAWVEIEM 260
>gi|311694667|gb|ADP97540.1| exonuclease III [marine bacterium HP15]
Length = 270
Score = 71.0 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 33/139 (23%), Gaps = 27/139 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQKM 46
L ++ D+ K G V+ GD N + Q
Sbjct: 132 LMRYLDELKKAGGHVVVMGDMNISPTDKDIGIGADNAKRWLRTGKCSFLPEEREWLGQVE 191
Query: 47 DPD--GLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
+ ++ + R+K + +S S
Sbjct: 192 SRGYTDVFRHLHPDEADTFSWFDYRSKGFERDPKRGLRIDLIMASDSLLPKARKAGVSYD 251
Query: 102 DTRRSKLSTHCPLTIEYDF 120
+ S HCP+ ++
Sbjct: 252 IRAMERPSDHCPVWASFEL 270
>gi|71065757|ref|YP_264484.1| exonuclease III [Psychrobacter arcticus 273-4]
gi|71038742|gb|AAZ19050.1| Exodeoxyribonuclease III [Psychrobacter arcticus 273-4]
Length = 274
Score = 71.0 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 33/141 (23%), Gaps = 27/141 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD-------------------------TDDFW 43
L + D G V+ GD N I
Sbjct: 133 LMAYIDILKAEGRSLVVMGDMNIAPEDIDIGIGEVNAKRWLKNRKTSFLPEEREWYSALM 192
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
+ D + +P+ E R++ D + L V S
Sbjct: 193 SRELTDTYRLHYPESTELYSWFDYRSRGFDDDPKRGLRIDHILCTPDLVAHCVDAGISYE 252
Query: 102 DTRRSKLSTHCPLTIEYDFEK 122
K S H P+ +D K
Sbjct: 253 LRAMEKPSDHAPIWTAFDLNK 273
>gi|158317046|ref|YP_001509554.1| exodeoxyribonuclease III Xth [Frankia sp. EAN1pec]
gi|158112451|gb|ABW14648.1| exodeoxyribonuclease III Xth [Frankia sp. EAN1pec]
Length = 297
Score = 71.0 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLL 52
L+ + G P + GDFN D ++ GLL
Sbjct: 131 ALRDVVAELAPQG-PVMTLGDFNIAPTDADVWDIAEFEGATHVTEAERAALGRLHDAGLL 189
Query: 53 IRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ R + + D D + + + + S
Sbjct: 190 DLMRERWPDETVYTYWDYRQLCFPKNYGMRIDLTLATADVAARARAVWVDRAARKGTGTS 249
Query: 110 THCPLTIEYD 119
H P+ ++ D
Sbjct: 250 DHAPVVVDLD 259
>gi|260459779|ref|ZP_05808033.1| exodeoxyribonuclease III Xth [Mesorhizobium opportunistum WSM2075]
gi|259034581|gb|EEW35838.1| exodeoxyribonuclease III Xth [Mesorhizobium opportunistum WSM2075]
Length = 264
Score = 71.0 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
L++WA+++++ V+AGD+N I F + ++
Sbjct: 129 MARLERWAEERLRLEEALVLAGDYNVIPEPIDARFPENWLGDALFQPQTRQAFRRLLNLG 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
++ + L+ S K
Sbjct: 189 FTEAVRAVTDAPDTYTFWDYQAGAWQKNNGIRIDHLLLSPEAANRFSSASIEKHVRAWEK 248
Query: 108 LSTHCPLTIEYDF 120
S H P+ I+
Sbjct: 249 PSDHVPVAIDLAL 261
>gi|88657831|ref|YP_507482.1| exodeoxyribonuclease III [Ehrlichia chaffeensis str. Arkansas]
gi|88599288|gb|ABD44757.1| exodeoxyribonuclease III [Ehrlichia chaffeensis str. Arkansas]
Length = 281
Score = 71.0 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 36/134 (26%), Gaps = 18/134 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQ---KMDP 48
+ L++ A +K ++ GD+N I D ++ +
Sbjct: 148 DQLREHALSLLKKEEILILGGDYNVAPYPIDVYDPEVMDGKLCFHKSEREKFRSILNLGF 207
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + + + DN + ++S D
Sbjct: 208 TDSFRVLNDYEKKFSWWNYKAGAWQQNRGLRIDNLLLSPQATDKLLSCVIHDKLRGLDTP 267
Query: 109 STHCPLTIEYDFEK 122
S H P+ E D
Sbjct: 268 SDHAPVVCELDLSS 281
>gi|198282497|ref|YP_002218818.1| exodeoxyribonuclease III Xth [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218667378|ref|YP_002424687.1| exodeoxyribonuclease III [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198247018|gb|ACH82611.1| exodeoxyribonuclease III Xth [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218519591|gb|ACK80177.1| exodeoxyribonuclease III [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 257
Score = 70.6 bits (171), Expect = 6e-11, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
E L+ +++ ++ GDFN ++ D ++
Sbjct: 124 ERLRGLIAGELQGWPQLLLVGDFNIAPDTRDVYDAAEWGEGILCSAPERAALGALLELGL 183
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + R + + D +
Sbjct: 184 HDSYRKMHPDARAWSWWDYRAAAFRRNQGLRIDLILASSPVLSRTREVVIDRAARAAERP 243
Query: 109 STHCPLTIEYD 119
S H P+ I +
Sbjct: 244 SDHAPVCITLE 254
>gi|149202739|ref|ZP_01879711.1| exodeoxyribonuclease III [Roseovarius sp. TM1035]
gi|149144021|gb|EDM32055.1| exodeoxyribonuclease III [Roseovarius sp. TM1035]
Length = 260
Score = 70.6 bits (171), Expect = 6e-11, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 35/132 (26%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L A + + P ++ GD+N F + ++
Sbjct: 128 MDRLHARARDLLASEEPVLMGGDYNIIPQDEDAARPDAWREDALARPESRAAFRRILNLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSK 107
Q + ++ +FL+ + + R K
Sbjct: 188 FTEAFRAQVQGPGHYTFWDYQAGAWNKNDGIRIDHFLLSPQAADLMTDCGIDKDIRGRDK 247
Query: 108 LSTHCPLTIEYD 119
S H PL +E +
Sbjct: 248 PSDHVPLWVELN 259
>gi|254389480|ref|ZP_05004707.1| exonuclease [Streptomyces clavuligerus ATCC 27064]
gi|326444199|ref|ZP_08218933.1| exodeoxyribonuclease III [Streptomyces clavuligerus ATCC 27064]
gi|197703194|gb|EDY49006.1| exonuclease [Streptomyces clavuligerus ATCC 27064]
Length = 259
Score = 70.6 bits (171), Expect = 6e-11, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 32/130 (24%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGLL 52
LK+ PF + GD+N D + GL
Sbjct: 129 ALKEAVAADAAGPRPFAVLGDYNIAPADEDVWDRAAFEGSTHVTEPERAALAALRETGLS 188
Query: 53 IRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
P+ + R + D + ++ + + S
Sbjct: 189 DVVPRPLKYDHPFTYWDYRQLCFPKNRGMRIDLVYGNGPFAGAVKDSYVDREERKGKGAS 248
Query: 110 THCPLTIEYD 119
H P+ ++ D
Sbjct: 249 DHAPVVVDLD 258
>gi|312885637|ref|ZP_07745272.1| exodeoxyribonuclease III [Mucilaginibacter paludis DSM 18603]
gi|311301844|gb|EFQ78878.1| exodeoxyribonuclease III [Mucilaginibacter paludis DSM 18603]
Length = 257
Score = 70.6 bits (171), Expect = 6e-11, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E LK A + G P V+ GD+N + ++ + G
Sbjct: 126 ERLKSHAASLLAAGTPVVLTGDYNVMPTELDVYKPERWLDDALFRPETRAAFKDLVDQGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ ++ + + D+ +++ K
Sbjct: 186 TDAIRKLYPSQKIYTFWDYFRDAYGRDAGLRIDHFLLSPQLDGRLLAAGVDRNVRGWEKT 245
Query: 109 STHCPLTIEY 118
S H P+ IE
Sbjct: 246 SDHAPVWIEL 255
>gi|329847835|ref|ZP_08262863.1| exodeoxyribonuclease III [Asticcacaulis biprosthecum C19]
gi|328842898|gb|EGF92467.1| exodeoxyribonuclease III [Asticcacaulis biprosthecum C19]
Length = 258
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
E LK A + + TG P V+AGD+N I
Sbjct: 127 ERLKAHAAELLTTGAPVVLAGDYNVMPTDIDVYAPDRWQDDALFRIEVREAYAALMAQGW 186
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
L ++ + D+ + + + K
Sbjct: 187 TDALRELHPGEQIFTFWDYLRARWPRNAGLRIDHLLLSPSMAPRLRQAEVDRHVRGWEKA 246
Query: 109 STHCPLTIEYD 119
S H P+ I D
Sbjct: 247 SDHAPVWIVLD 257
>gi|261408212|ref|YP_003244453.1| endonuclease/exonuclease/phosphatase [Paenibacillus sp. Y412MC10]
gi|261284675|gb|ACX66646.1| Endonuclease/exonuclease/phosphatase [Paenibacillus sp. Y412MC10]
Length = 494
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 4/122 (3%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + IP VI GDFN S + + + + +
Sbjct: 179 QKSAALIVDKMKA-FDPDIPVVITGDFNTLPGSDTYSIFTSNGLSDAHVTAKKRTNDDLG 237
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
++ L ++I+ + + S H P+ +E ++
Sbjct: 238 TFHNYKDP---TGGGSGNRIDWILHGQGWNILHSEIINYKEDGQYPSDHYPVMMEGTLQQ 294
Query: 123 GN 124
N
Sbjct: 295 SN 296
>gi|261493298|ref|ZP_05989824.1| exodeoxyribonuclease III [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496564|ref|ZP_05992944.1| exodeoxyribonuclease III [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261307767|gb|EEY09090.1| exodeoxyribonuclease III [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261310942|gb|EEY12119.1| exodeoxyribonuclease III [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 291
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 38/135 (28%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKES----- 61
L+ + + ++K P +I GD N + + ++ DG P+E+E
Sbjct: 156 LQNYLESELKPENPIIIMGDMNISPTDLDIGIGEPNRKRWLRDGKCSFLPEEREWLDRLY 215
Query: 62 ------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D + V
Sbjct: 216 SYGLVDTFRAGNPDVNDKFSWFDYRSKGFDDNRGLRIDLILASKSLAERCVETGIDLDIR 275
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 276 AMEKPSDHSPVWATF 290
>gi|13471939|ref|NP_103506.1| exonuclease [Mesorhizobium loti MAFF303099]
gi|14022683|dbj|BAB49292.1| probable exonuclease [Mesorhizobium loti MAFF303099]
Length = 256
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 34/129 (26%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGLL 52
L+ A Q + TG+P V+AGD+N + + G +
Sbjct: 127 RLEAHAAQLLDTGLPVVLAGDYNIVPEPRDIYATRSYDDNALVQPESRAAFAALIEQGWV 186
Query: 53 IRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ R + D+ + + S
Sbjct: 187 DALRKIYPKETLYTFWDYRRNRWPRDAGLRLDHILLSKTLARRLKGAGIDRDVRGEDGAS 246
Query: 110 THCPLTIEY 118
H P+ +E
Sbjct: 247 DHAPVWVEL 255
>gi|93006020|ref|YP_580457.1| exonuclease III [Psychrobacter cryohalolentis K5]
gi|92393698|gb|ABE74973.1| Exodeoxyribonuclease III [Psychrobacter cryohalolentis K5]
Length = 274
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 34/141 (24%), Gaps = 27/141 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD-------------------------TDDFW 43
L + D G VI GD N I +
Sbjct: 133 LMAYIDTLKAEGRSLVIMGDMNIAPEDIDIGIGEVNAKRWLKNRKTSFLPEEREWYSNLM 192
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
+ D + +P+ E R++ D + L V S
Sbjct: 193 SRELTDTYRLHYPESTELYSWFDYRSRGFDDDPKRGLRIDHILCTPDLVECCVDAGISYE 252
Query: 102 DTRRSKLSTHCPLTIEYDFEK 122
K S H P+ +D K
Sbjct: 253 LRAMEKPSDHAPIWTAFDLNK 273
>gi|158423021|ref|YP_001524313.1| exodeoxyribonuclease III protein [Azorhizobium caulinodans ORS 571]
gi|158329910|dbj|BAF87395.1| exodeoxyribonuclease III protein [Azorhizobium caulinodans ORS 571]
Length = 270
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 36/131 (27%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E L+ ++ Q + +P V+AGDFN + + DG
Sbjct: 126 ERLRNYSAQMLDLDLPMVLAGDFNIMPEERDVYAPERWRDDALFRPEVRAAFADLRDDGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + + D+ + +VS R
Sbjct: 186 VDALRHLHPDARLYTFWKYLRNAFARDAGLRIDHLLLSPALAPRLVSAGVDRAVRGRDHA 245
Query: 109 STHCPLTIEYD 119
S H P I D
Sbjct: 246 SDHAPAWITLD 256
>gi|237738747|ref|ZP_04569228.1| exodeoxyribonuclease III [Fusobacterium sp. 2_1_31]
gi|294781992|ref|ZP_06747324.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
gi|229423850|gb|EEO38897.1| exodeoxyribonuclease III [Fusobacterium sp. 2_1_31]
gi|294481803|gb|EFG29572.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
Length = 253
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 24/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ +K+ ++ P V+ GD N I + + +
Sbjct: 124 DEFRKYLK-NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLESGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + + R + + F++ + Y +++
Sbjct: 183 IDTFRYFYPDLEHAYSWWSYRANARKNNTGW--RIDYFVVSKALEK--YLVDAEIHAQTE 238
Query: 108 LSTHCPLTIEYDFEK 122
S HCP+ + DF+K
Sbjct: 239 GSDHCPVVLFLDFKK 253
>gi|110633439|ref|YP_673647.1| exodeoxyribonuclease III [Mesorhizobium sp. BNC1]
gi|110284423|gb|ABG62482.1| Exodeoxyribonuclease III [Chelativorans sp. BNC1]
Length = 259
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 38/134 (28%), Gaps = 18/134 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT----------------DDFWQKMDPDG 50
E L+K A KTG P V+AGDFN I F + +
Sbjct: 126 ERLRKHATALRKTGAPIVLAGDFNVAPTDIDIYPTKSWGDNALIQPESRAAFRRLLGRSW 185
Query: 51 LL--IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
E+ + + D+ + +IV R
Sbjct: 186 TDGIRLLHPEQRIYTFWDYKRLRWQRDAGLRLDHLLLSENLRGAIVKAGVDRDVRGREGA 245
Query: 109 STHCPLTIEYDFEK 122
S H P IE + +
Sbjct: 246 SDHAPAWIELNLRR 259
>gi|146277242|ref|YP_001167401.1| exodeoxyribonuclease III Xth [Rhodobacter sphaeroides ATCC 17025]
gi|145555483|gb|ABP70096.1| Exodeoxyribonuclease III [Rhodobacter sphaeroides ATCC 17025]
Length = 259
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+K+ A + ++T P V+AGD+N + F + ++
Sbjct: 127 IARMKQRAAELLETEDPVVLAGDYNVIPQAEDAARPEAWVTDALFLPESRAAFRRILNLG 186
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSK 107
+ ++ + L+ + + K
Sbjct: 187 YTEAFRARSFGPGHYSFWDYQAGAWEKNNGIRIDHLLLSPQAADLMTDVRIDREVRAGEK 246
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 247 PSDHVPVWVEL 257
>gi|182435048|ref|YP_001822767.1| putative exonuclease [Streptomyces griseus subsp. griseus NBRC
13350]
gi|178463564|dbj|BAG18084.1| putative exonuclease [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 259
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 33/132 (25%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
E L+K +PF + GDFN D +
Sbjct: 128 EALRKAVAADAAKALPFAVLGDFNVAPTDEDVWDPALFEGATHVTPAERAALAALEAEGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ R + + R + D + ++ + +
Sbjct: 188 SEVHPRPLKYDRAYTFWDYRELRFPKNKGMRIDLTFGNAPFTAAVKDSYVDREERKGKGA 247
Query: 109 STHCPLTIEYDF 120
S H P+ ++ D
Sbjct: 248 SDHAPVVVDLDL 259
>gi|114707219|ref|ZP_01440117.1| exodeoxyribonuclease III [Fulvimarina pelagi HTCC2506]
gi|114537415|gb|EAU40541.1| exodeoxyribonuclease III [Fulvimarina pelagi HTCC2506]
Length = 260
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------QKMDPD 49
+ L++ A+ + ++AGD+N D + +
Sbjct: 128 MDRLERHAEALLAHEERLILAGDYNVIPQPKDVHDPAAWLNDALFQPESRGNLRRLVHLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + ++ + L+ IV S K
Sbjct: 188 FADALRMTDDRAELYTFWDYQAGAWQKNNGIRIDHLLLSPEAQIVLRSVGIDKQVRSWEK 247
Query: 108 LSTHCPLTIEY 118
S H P+ E
Sbjct: 248 PSDHVPILAEL 258
>gi|261821541|ref|YP_003259647.1| exonuclease III [Pectobacterium wasabiae WPP163]
gi|261605554|gb|ACX88040.1| exodeoxyribonuclease III [Pectobacterium wasabiae WPP163]
Length = 272
Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 30/137 (21%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + +Q P ++ GD N +
Sbjct: 134 QDLQTYLEQHHSATQPLIVMGDVNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMAR 193
Query: 43 WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q E R+ D + D + V+
Sbjct: 194 LQGWGLIDTFRAANPESNDRFSWFDYRSAGFDDNRGLRIDLILASTFLAERCVATGIDYD 253
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 254 IRGMEKPSDHAPIWAEF 270
>gi|310814721|ref|YP_003962685.1| exodeoxyribonuclease III [Ketogulonicigenium vulgare Y25]
gi|308753456|gb|ADO41385.1| exodeoxyribonuclease III [Ketogulonicigenium vulgare Y25]
Length = 259
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 39/132 (29%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E L K A+ + + P +AGD+N + + F + ++
Sbjct: 127 MERLHKRAEALLASEEPAFMAGDYNVIPQAEDAKNPAEWLEDALYLPQTRDAFRRILNLG 186
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ ++ +FL+ + + + R K
Sbjct: 187 FTDAFRAITQGPGHYSFWDFQAGAWQRDNGIRIDHFLLTPQCADLLQNAWIEKDARGREK 246
Query: 108 LSTHCPLTIEYD 119
S H P+ +E D
Sbjct: 247 PSDHVPVWVELD 258
>gi|238751649|ref|ZP_04613139.1| Exodeoxyribonuclease III [Yersinia rohdei ATCC 43380]
gi|238710211|gb|EEQ02439.1| Exodeoxyribonuclease III [Yersinia rohdei ATCC 43380]
Length = 271
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 32/137 (23%), Gaps = 25/137 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+++ +Q + +I GD N + + Q
Sbjct: 135 LQQYLEQHLSPESQVLIMGDINISPTDLDIGIGEESRKRWLRTGKCSFLPEERAWLEHLQ 194
Query: 45 KMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ R++ + + D + ++
Sbjct: 195 SWGLVDTFRAANPDCNDQFSWFDYRSRGFDENRGLRIDLLLASQPLAARCIATGIDYEIR 254
Query: 104 RRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 255 GMEKPSDHAPVWSEFAL 271
>gi|46201885|ref|ZP_00208288.1| COG0708: Exonuclease III [Magnetospirillum magnetotacticum MS-1]
Length = 258
Score = 70.6 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 35/134 (26%), Gaps = 21/134 (15%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMD 47
L+ A + IPFV+ GDFN D +
Sbjct: 126 MARLRAHAQSLLTQDIPFVLGGDFNICPTDDDVYDPPNWQNDALCRPDSRAAFRAIVNLG 185
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRR 105
E++ ++ +FL+ + + D +
Sbjct: 186 LTEAFRALHPEEK-GRYSFWDYQAGAWQRDEGLRIDHFLLSPRAADHLQACDIDRAPRGK 244
Query: 106 SKLSTHCPLTIEYD 119
K S H P+ IE
Sbjct: 245 EKASDHTPVWIELS 258
>gi|152968141|ref|YP_001363925.1| exodeoxyribonuclease III Xth [Kineococcus radiotolerans SRS30216]
gi|151362658|gb|ABS05661.1| exodeoxyribonuclease III Xth [Kineococcus radiotolerans SRS30216]
Length = 266
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 29/135 (21%), Gaps = 20/135 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
L + E + W Q + GDFN D + +
Sbjct: 130 LERLREAGRGWLAQ--DPAAQVALVGDFNIAPTDEDVWDPEAFAGATHVSAPERAAFTAL 187
Query: 47 DPDGLLIRFPQ---EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
G + + + D + + +
Sbjct: 188 VEAGFADVVRPHAPGPGTYTYWDYQQLRFAKRQGMRIDFVLGSPALAARVSGATIDREER 247
Query: 104 RRSKLSTHCPLTIEY 118
+ S H P+ +E
Sbjct: 248 KGKGASDHAPVVVEL 262
>gi|256854033|ref|ZP_05559398.1| exodeoxyribonuclease [Enterococcus faecalis T8]
gi|307290261|ref|ZP_07570177.1| exodeoxyribonuclease III [Enterococcus faecalis TX0411]
gi|256710976|gb|EEU26019.1| exodeoxyribonuclease [Enterococcus faecalis T8]
gi|306498682|gb|EFM68183.1| exodeoxyribonuclease III [Enterococcus faecalis TX0411]
gi|315030444|gb|EFT42376.1| exodeoxyribonuclease III [Enterococcus faecalis TX4000]
Length = 251
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + + ++ + P ++ GD N +I + + +
Sbjct: 113 LKRLAYRMTWEDAFRAYLNE-LNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEER 171
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 172 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 231
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 232 KIHTDILG----SDHCPVEVVLDF 251
>gi|29377212|ref|NP_816366.1| exodeoxyribonuclease [Enterococcus faecalis V583]
gi|227554220|ref|ZP_03984267.1| exodeoxyribonuclease [Enterococcus faecalis HH22]
gi|29344678|gb|AAO82436.1| exodeoxyribonuclease [Enterococcus faecalis V583]
gi|227176667|gb|EEI57639.1| exodeoxyribonuclease [Enterococcus faecalis HH22]
gi|315573773|gb|EFU85964.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309B]
gi|315580287|gb|EFU92478.1| exodeoxyribonuclease III [Enterococcus faecalis TX0309A]
Length = 251
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + + ++ + P ++ GD N +I + + +
Sbjct: 113 LKRLAYRMTWEDAFRAYLNE-LNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEER 171
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 172 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 231
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 232 KIHTDILG----SDHCPVEVVLDF 251
>gi|209549080|ref|YP_002280997.1| exodeoxyribonuclease III Xth [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209534836|gb|ACI54771.1| exodeoxyribonuclease III Xth [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 263
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
E L+ +A +++ V+AGD+N D + +
Sbjct: 129 MERLRSFAAERLAYEEMLVLAGDYNVIPEPHDCFDPKVWESDALFLPQTREAFRRLENLG 188
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + + I D+ + + + S K
Sbjct: 189 LTDAVRATTDATQFYSFWDYQAGAWPKNNGIRIDHLLLSPEAADRMTSAAIEKHVRAWEK 248
Query: 108 LSTHCPLTIEYDF 120
S H P+ +DF
Sbjct: 249 PSDHVPVIAYFDF 261
>gi|241204226|ref|YP_002975322.1| exodeoxyribonuclease III Xth [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240858116|gb|ACS55783.1| exodeoxyribonuclease III Xth [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 264
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 18/135 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
L+ +A + ++ G+P ++AGDFN I
Sbjct: 126 RRLQDYAAELLELGVPSILAGDFNVMPTEIDVYKPERWLDDALFRPEVRKAYAHLVAQGW 185
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ E+ S + D+ + +
Sbjct: 186 TDAVRHLHPEERIYTFWRYWRNSFERDAGLRIDHFLLSPAVAPLLRWATVRKKPRGWEHT 245
Query: 109 STHCPLTIEYDFEKG 123
S H P+ IE D +
Sbjct: 246 SDHAPVMIELDVSEA 260
>gi|298291878|ref|YP_003693817.1| exodeoxyribonuclease III [Starkeya novella DSM 506]
gi|296928389|gb|ADH89198.1| exodeoxyribonuclease III [Starkeya novella DSM 506]
Length = 262
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 13/134 (9%), Positives = 34/134 (25%), Gaps = 18/134 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMD 47
+ LK ++ P ++ GD+N + + +
Sbjct: 128 MKRLKAHVANRLAYEEPLIVCGDYNVIPEPVDAANPAAWVNDALFLPQTRSAFRELIHLG 187
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ E + + I D+ + + + K
Sbjct: 188 MTEAVRATTDEPGLYSFWDYQAGAWQKNNGIRIDHLLLSPQAADRLKAVGIDKHVRAWEK 247
Query: 108 LSTHCPLTIEYDFE 121
S H P+ ++ ++
Sbjct: 248 PSDHVPVWVDLAYK 261
>gi|257079900|ref|ZP_05574261.1| exonuclease III [Enterococcus faecalis JH1]
gi|294779916|ref|ZP_06745298.1| exodeoxyribonuclease III [Enterococcus faecalis PC1.1]
gi|307269235|ref|ZP_07550589.1| exodeoxyribonuclease III [Enterococcus faecalis TX4248]
gi|256987930|gb|EEU75232.1| exonuclease III [Enterococcus faecalis JH1]
gi|294453028|gb|EFG21448.1| exodeoxyribonuclease III [Enterococcus faecalis PC1.1]
gi|306514454|gb|EFM83015.1| exodeoxyribonuclease III [Enterococcus faecalis TX4248]
gi|329578016|gb|EGG59431.1| exodeoxyribonuclease III [Enterococcus faecalis TX1467]
Length = 251
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + + ++ + P ++ GD N +I + + +
Sbjct: 113 LKRLAYRMTWEDAFRAYLNE-LNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEER 171
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 172 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 231
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 232 KIHTDILG----SDHCPVEVVLDF 251
>gi|229549148|ref|ZP_04437873.1| exodeoxyribonuclease [Enterococcus faecalis ATCC 29200]
gi|256957962|ref|ZP_05562133.1| exonuclease III [Enterococcus faecalis DS5]
gi|257084299|ref|ZP_05578660.1| exonuclease III [Enterococcus faecalis Fly1]
gi|257090921|ref|ZP_05585282.1| exonuclease III [Enterococcus faecalis CH188]
gi|307276972|ref|ZP_07558082.1| exodeoxyribonuclease III [Enterococcus faecalis TX2134]
gi|312902560|ref|ZP_07761766.1| exodeoxyribonuclease III [Enterococcus faecalis TX0635]
gi|312951910|ref|ZP_07770798.1| exodeoxyribonuclease III [Enterococcus faecalis TX0102]
gi|229305702|gb|EEN71698.1| exodeoxyribonuclease [Enterococcus faecalis ATCC 29200]
gi|256948458|gb|EEU65090.1| exonuclease III [Enterococcus faecalis DS5]
gi|256992329|gb|EEU79631.1| exonuclease III [Enterococcus faecalis Fly1]
gi|256999733|gb|EEU86253.1| exonuclease III [Enterococcus faecalis CH188]
gi|306506395|gb|EFM75555.1| exodeoxyribonuclease III [Enterococcus faecalis TX2134]
gi|310630099|gb|EFQ13382.1| exodeoxyribonuclease III [Enterococcus faecalis TX0102]
gi|310634230|gb|EFQ17513.1| exodeoxyribonuclease III [Enterococcus faecalis TX0635]
gi|315035107|gb|EFT47039.1| exodeoxyribonuclease III [Enterococcus faecalis TX0027]
gi|315154300|gb|EFT98316.1| exodeoxyribonuclease III [Enterococcus faecalis TX0031]
gi|315159607|gb|EFU03624.1| exodeoxyribonuclease III [Enterococcus faecalis TX0312]
gi|315579630|gb|EFU91821.1| exodeoxyribonuclease III [Enterococcus faecalis TX0630]
gi|323481658|gb|ADX81097.1| exodeoxyribonuclease III [Enterococcus faecalis 62]
Length = 251
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + + ++ + P ++ GD N +I + + +
Sbjct: 113 LKRLAYRMTWEDAFRAYLNE-LNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEER 171
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 172 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 231
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 232 KIHTDILG----SDHCPVEVVLDF 251
>gi|326801889|ref|YP_004319708.1| exodeoxyribonuclease III Xth [Sphingobacterium sp. 21]
gi|326552653|gb|ADZ81038.1| exodeoxyribonuclease III Xth [Sphingobacterium sp. 21]
Length = 259
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ L A + + IP ++ GD+N + + + G
Sbjct: 126 QRLANHAQELLNKNIPVILTGDYNVIPTELDVYKPERWVDDALFRPEVRMAFSDLMTQGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + + D+ +V+ K
Sbjct: 186 TDAIRQLYPNERIYTFWDYFRNAYGRDAGLRIDHFLLSPQLVEKLVAAGVDRYVRGWEKT 245
Query: 109 STHCPLTIEYD 119
S H P+ IE
Sbjct: 246 SDHAPVWIELR 256
>gi|153009683|ref|YP_001370898.1| exodeoxyribonuclease III Xth [Ochrobactrum anthropi ATCC 49188]
gi|151561571|gb|ABS15069.1| exodeoxyribonuclease III Xth [Ochrobactrum anthropi ATCC 49188]
Length = 260
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA ++ P V+AGD+N + F + +
Sbjct: 128 MQRLELWAKDRLALEEPLVLAGDYNVIPEPDDAKNPEQWVGDALFKPQSRQAFRRLENLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+S ++ + ++ +S D K
Sbjct: 188 FTDAIRASTDDSGIYSFWDYQAGAWQKNNGIRIDHLMLSPEAANRFISSDVEKHVRAWEK 247
Query: 108 LSTHCPLTIEYD 119
S H P+TI
Sbjct: 248 PSDHVPVTITLS 259
>gi|26989426|ref|NP_744851.1| exodeoxyribonuclease III, putative [Pseudomonas putida KT2440]
gi|24984291|gb|AAN68315.1|AE016465_8 exodeoxyribonuclease III, putative [Pseudomonas putida KT2440]
Length = 265
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLL- 52
L + A ++G P ++AGDFN + + +Q++ G L
Sbjct: 131 LIQHARSLQESGHPTLLAGDFNVVPTDMDIYNPRSWLKDALLQPESRACYQRLLDQGWLD 190
Query: 53 --IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ + D+ + + + ++K S
Sbjct: 191 AIRHLYPDERVYTFWDYFRNHWARNAGLRIDHLLLNRELAPYLKRAGVDAWVRNQAKASD 250
Query: 111 HCPLTIEY 118
H P+ IE
Sbjct: 251 HAPVWIEL 258
>gi|218463283|ref|ZP_03503374.1| exodeoxyribonuclease III protein [Rhizobium etli Kim 5]
Length = 263
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
E L+ +A +++ V+AGD+N D + +
Sbjct: 129 MERLRSFAAERLAYEEMLVLAGDYNVIPEPHDCFDPKVWENDALFLPQTREAFRRLENLG 188
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + I D+ + + + S K
Sbjct: 189 LTDAVRATTDATRLYSFWDYQAGAWPKNNGIRIDHLLLSPEAADRMTSAAIEKHVRAWEK 248
Query: 108 LSTHCPLTIEYDF 120
S H P+ +DF
Sbjct: 249 PSDHVPVIAYFDF 261
>gi|86130871|ref|ZP_01049470.1| exodeoxyribonuclease III (Xth) [Dokdonia donghaensis MED134]
gi|85818282|gb|EAQ39442.1| exodeoxyribonuclease III (Xth) [Dokdonia donghaensis MED134]
Length = 254
Score = 70.2 bits (170), Expect = 8e-11, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 36/134 (26%), Gaps = 22/134 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+ L+ + ++ + VI GD+N +I D K
Sbjct: 125 MDLLQDYVNELKQDKPNLVIGGDYNICHEAIDIHDPVRNKKVSGFLPVEREWIGNFMESG 184
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+E ++ R + + ++ L +K
Sbjct: 185 FIDSFRHLNKEPDNYTWWSYRANARANNKGW--RIDYNMVSEPLKDKISRAIILS--DAK 240
Query: 108 LSTHCPLTIEYDFE 121
S HCP +E D
Sbjct: 241 HSDHCPHMVELDLS 254
>gi|238794520|ref|ZP_04638129.1| Exodeoxyribonuclease III [Yersinia intermedia ATCC 29909]
gi|238726203|gb|EEQ17748.1| Exodeoxyribonuclease III [Yersinia intermedia ATCC 29909]
Length = 271
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 32/137 (23%), Gaps = 25/137 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+++ +Q++ +I GD N + Q
Sbjct: 135 LQQYLEQQLSADAQVLIMGDLNISPTDLDIGIGEDSRKRWLRTGKCSFLPEERAWLARLQ 194
Query: 45 KMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
E R++ + + D + ++
Sbjct: 195 NWGLVDTFRAANPECNDQFSWFDYRSRGFDENRGLRIDLLLASQPLATRCIATGIDYEIR 254
Query: 104 RRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 255 GMEKPSDHAPVWSEFAL 271
>gi|315162099|gb|EFU06116.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
Length = 251
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + + ++ + P ++ GD N I + + +
Sbjct: 113 LKRLAYRMTWEDAFRAYLNE-LNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEER 171
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 172 QKFTGLLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 231
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 232 KIHTDILG----SDHCPVEVVLDF 251
>gi|300860584|ref|ZP_07106671.1| exodeoxyribonuclease III [Enterococcus faecalis TUSoD Ef11]
gi|300849623|gb|EFK77373.1| exodeoxyribonuclease III [Enterococcus faecalis TUSoD Ef11]
Length = 251
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 38/144 (26%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + + ++ + P ++ GD N +I + + +
Sbjct: 113 LKRLAYRMTWEDAFRAYLNE-LNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEER 171
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 172 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 231
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 232 KIHTDILG----SDHCPVEVVLDF 251
>gi|332978781|gb|EGK15471.1| exodeoxyribonuclease III [Psychrobacter sp. 1501(2011)]
Length = 271
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 32/139 (23%), Gaps = 27/139 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQKM 46
L ++ DQ G +I GD N + + M
Sbjct: 133 LNEYVDQLKDEGRTLIIMGDMNIAPEDNDIGIGEKNAQRWLKNGKTSFLPEEREWYSALM 192
Query: 47 DPDGLLIRFPQEKE---STCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
D + R++ D + L + + S
Sbjct: 193 SRDLFDTYRIHNPDCNEKFSWFDYRSRGFNDDPKRGLRIDHILCTDDIKDQCIDAGISYE 252
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ + F
Sbjct: 253 LRAMEKPSDHAPIWASFKF 271
>gi|315174931|gb|EFU18948.1| exodeoxyribonuclease III [Enterococcus faecalis TX1346]
Length = 251
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + + ++ + P ++ GD N I + + +
Sbjct: 113 LKRLAYRMTWEDAFRAYLNE-LNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEER 171
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 172 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 231
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 232 KIHTDILG----SDHCPVEVVLDF 251
>gi|313499211|gb|ADR60577.1| Exodeoxyribonuclease III [Pseudomonas putida BIRD-1]
Length = 265
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLL- 52
L + A ++G P ++AGDFN + + +Q++ G L
Sbjct: 131 LIQHARSLYESGHPTLLAGDFNVVPTDMDIYNPRSWLKDALLQPESRACYQRLLDQGWLD 190
Query: 53 --IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ + D+ + + + +K S
Sbjct: 191 AIRHLYPDERVYTFWDYFRNHWARNAGLRIDHLLLNHELAPYLKRAGVDAWVRNEAKASD 250
Query: 111 HCPLTIEY 118
H P+ IE
Sbjct: 251 HAPVWIEL 258
>gi|227111460|ref|ZP_03825116.1| exonuclease III [Pectobacterium carotovorum subsp. brasiliensis
PBR1692]
Length = 268
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 31/139 (22%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + +Q P ++ GD N +
Sbjct: 130 QDLQTYLEQHHSATQPLIVMGDVNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMAR 189
Query: 43 WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q+ + R+ D + D + V+
Sbjct: 190 LQRWGLIDTFRAANPDSNDRFSWFDYRSAGFDDNRGLRIDLILASTFLAERCVATGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ ++
Sbjct: 250 IRGMEKPSDHAPIWAQFSL 268
>gi|304391804|ref|ZP_07373746.1| exodeoxyribonuclease III [Ahrensia sp. R2A130]
gi|303296033|gb|EFL90391.1| exodeoxyribonuclease III [Ahrensia sp. R2A130]
Length = 265
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 32/130 (24%), Gaps = 18/130 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMD 47
+ L WA ++ P ++AGD+N + + +
Sbjct: 133 MDRLHAWAADRLALEEPLILAGDYNVIPQPNDCWNPKVWEGDALFRDETRSRFEALKNLG 192
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
L + + I D+ + + K
Sbjct: 193 FTEALRSSANADGIYTFWDYQAGAWPKNHGIRIDHLLMSAEAADMFNGCGIDSFVRDWEK 252
Query: 108 LSTHCPLTIE 117
S H P+ +E
Sbjct: 253 PSDHVPIWLE 262
>gi|228471546|ref|ZP_04056321.1| exodeoxyribonuclease III [Capnocytophaga gingivalis ATCC 33624]
gi|228277122|gb|EEK15802.1| exodeoxyribonuclease III [Capnocytophaga gingivalis ATCC 33624]
Length = 253
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 36/128 (28%), Gaps = 22/128 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-----------QKMDPD-------GL 51
+ + ++ KT +I GD+N +I D +K D
Sbjct: 130 QNYINELKKTHPNLIICGDYNICHEAIDIHDPVRNANVSGFLPVERKWLDDFLKSGFIDS 189
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F +E + R + + D ++ K S H
Sbjct: 190 FRFFHKEPHNYSWWSYRANARANNKGWRIDYCLVAQPLENRLLRAAILPEA----KHSDH 245
Query: 112 CPLTIEYD 119
CP+ +E
Sbjct: 246 CPILVEIQ 253
>gi|120554411|ref|YP_958762.1| exodeoxyribonuclease III [Marinobacter aquaeolei VT8]
gi|120324260|gb|ABM18575.1| Exodeoxyribonuclease III [Marinobacter aquaeolei VT8]
Length = 270
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 34/139 (24%), Gaps = 27/139 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT---DDFWQKMDPD---------------- 49
L + D+ K ++ GD N D+ + +
Sbjct: 132 LMAYLDELTKKPGHILVMGDMNISPTDRDIGIGADNAKRWLRSGKCSFLPEEREWLGQVE 191
Query: 50 -----GLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
+ ++ + R+K + +S + S
Sbjct: 192 QRGFTDVFRHLHPDEANTFSWFDYRSKGFERDPRRGLRIDLIMASDSLLPKAKAAGVSYD 251
Query: 102 DTRRSKLSTHCPLTIEYDF 120
+ S HCP+ +D
Sbjct: 252 IRAMERPSDHCPVWASFDL 270
>gi|317492293|ref|ZP_07950722.1| exodeoxyribonuclease III [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316919632|gb|EFV40962.1| exodeoxyribonuclease III [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 269
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 13/139 (9%), Positives = 31/139 (22%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + + + ++ GD N D
Sbjct: 130 QDLQNYLETEQTPAGQVIVMGDVNISPTDSDIGIGEENRKRWLRTGKCSFLPEEREWMDR 189
Query: 43 WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + E+ R+K + + D + +
Sbjct: 190 LKNWGLIDTYRQANPERNDQFSWFDYRSKGFDENRGLRIDLVLASQSLAERCIDTGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ ++
Sbjct: 250 IRGMEKPSDHAPIWADFKL 268
>gi|332558086|ref|ZP_08412408.1| exodeoxyribonuclease III [Rhodobacter sphaeroides WS8N]
gi|332275798|gb|EGJ21113.1| exodeoxyribonuclease III [Rhodobacter sphaeroides WS8N]
Length = 259
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E +K A + + T P V+AGD+N + F + ++
Sbjct: 127 MERMKTRAAELLATEEPVVLAGDYNVIPQAEDAARPEVWVTDALFLPESRAAFRRIVNLG 186
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSK 107
+ ++ + L+ + + K
Sbjct: 187 YTEAFRARTFGPGHYSFWDYQAGAWEKNNGIRIDHLLLSPQAADLMTDVRIDREVRSGEK 246
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 247 PSDHVPVWVEL 257
>gi|289208245|ref|YP_003460311.1| endonuclease/exonuclease/phosphatase [Thioalkalivibrio sp. K90mix]
gi|288943876|gb|ADC71575.1| Endonuclease/exonuclease/phosphatase [Thioalkalivibrio sp. K90mix]
Length = 554
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 14/124 (11%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK-ESTC 63
Q E L +W +Q+ + G+P +IAGD N + + G E ++
Sbjct: 434 QAERLAQWIEQERRDGLPVIIAGDLNAYAAEDP-----LRLLREAGKRDLVHAEPDQAYS 488
Query: 64 NVIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
V + LDY + RD + + + + +D S + S H P+
Sbjct: 489 YVFRGQSGQLDYLLGPRDLEERVGKAGSWAINADEPAFLGFDGSQPAEGPWRASDHDPVW 548
Query: 116 IEYD 119
++
Sbjct: 549 LDLQ 552
>gi|190891414|ref|YP_001977956.1| exodeoxyribonuclease III protein [Rhizobium etli CIAT 652]
gi|218516597|ref|ZP_03513437.1| exodeoxyribonuclease III protein [Rhizobium etli 8C-3]
gi|190696693|gb|ACE90778.1| exodeoxyribonuclease III protein [Rhizobium etli CIAT 652]
Length = 263
Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 35/133 (26%), Gaps = 18/133 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
L +A + ++ +P ++AGDFN I + ++ G
Sbjct: 126 RRLSAYAAELLEIEVPSILAGDFNVMPTEIDVYKPERWLDDALFRPEVRNAYAQLVAQGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ S + D+ + + S
Sbjct: 186 TDAVRHLHPGERIYTFWKYWRNSFERDAGLRIDHLLLSPTVAPWLRSASVRRKPRGWEHT 245
Query: 109 STHCPLTIEYDFE 121
S H P+ IE D
Sbjct: 246 SDHAPVVIELDIP 258
>gi|262067405|ref|ZP_06027017.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
gi|291378968|gb|EFE86486.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
Length = 253
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 24/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ +K+ ++ P V+ GD N I + + +
Sbjct: 124 DEFRKYLK-NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLESGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + + R + + F++ + Y +++
Sbjct: 183 TDTFRYFYPDLEHAYSWWSYRANARKNNTGW--RIDYFIVSKALDK--YLVDAEIHAQTE 238
Query: 108 LSTHCPLTIEYDFEK 122
S HCP+ + DF+K
Sbjct: 239 GSDHCPVVLFLDFKK 253
>gi|257420126|ref|ZP_05597120.1| exonuclease III [Enterococcus faecalis T11]
gi|257161954|gb|EEU91914.1| exonuclease III [Enterococcus faecalis T11]
Length = 251
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + + ++ + P ++ GD N I + + +
Sbjct: 113 LKRLAYRMTWEDAFRAYLNE-LNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEER 171
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 172 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 231
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 232 KIHTDILG----SDHCPVEVVLDF 251
>gi|99081700|ref|YP_613854.1| endonuclease/exonuclease/phosphatase [Ruegeria sp. TM1040]
gi|99037980|gb|ABF64592.1| Endonuclease/exonuclease/phosphatase [Ruegeria sp. TM1040]
Length = 344
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 22/142 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-----------------DDFWQKMD 47
Q WL+ + +++ G P V+ GD N D + +
Sbjct: 193 QAVWLRARVEDRLEAGAPLVVMGDLNDGPGLDAYEALFGRSSVEIIMGQELFDPHARHLL 252
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSYDQSDLD 102
+ + ++ LDY +I + + Y L
Sbjct: 253 RPNQQGLPTSARFYNHLEGRYFQALLDYIMISPPLQACAPRWRIWHPFEDAACYGTPSLC 312
Query: 103 TRRSKLSTHCPLTIEYDFEKGN 124
S H P+T++ D + +
Sbjct: 313 HALLTASDHFPVTLDLDLTQAS 334
>gi|288917707|ref|ZP_06412070.1| exodeoxyribonuclease III Xth [Frankia sp. EUN1f]
gi|288350922|gb|EFC85136.1| exodeoxyribonuclease III Xth [Frankia sp. EUN1f]
Length = 263
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/136 (11%), Positives = 35/136 (25%), Gaps = 20/136 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMD 47
+ +++ + G ++ GD N I + Q
Sbjct: 127 RFLAAIRERMAKLAADGRHVLVCGDLNICHREIDLKNWKGNLKKAGFLPQERAWLDQLFT 186
Query: 48 PDGLLI----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
DG + ++ R ++ D + ++S
Sbjct: 187 DDGFVDLVRNFAGEQPGPYTWWSWRGRAYDTDAGWRIDYLISTGQLAERLLSAAVDRAPA 246
Query: 104 RRSKLSTHCPLTIEYD 119
+ S H P+ ++D
Sbjct: 247 YDQRWSDHAPVYTDFD 262
>gi|268589456|ref|ZP_06123677.1| exodeoxyribonuclease III [Providencia rettgeri DSM 1131]
gi|291315121|gb|EFE55574.1| exodeoxyribonuclease III [Providencia rettgeri DSM 1131]
Length = 270
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 37/141 (26%), Gaps = 25/141 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKES--- 61
+ L+ + +I GD N + D ++ G P+E+E
Sbjct: 130 QDLQNYITSTQTAESQLLIMGDMNISPTDLDIGIGDANRKRWLKTGKCSFLPEEREWLAK 189
Query: 62 --------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
R+K D + D + ++
Sbjct: 190 LLGWGLVDTYRAKNPDISDCYSWFDYRSKGFDDNRGLRIDLLLASNKLAERCIATGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYDFEK 122
K S H P+ E+D K
Sbjct: 250 IRGMEKPSDHAPVWSEFDLSK 270
>gi|209548989|ref|YP_002280906.1| exodeoxyribonuclease III Xth [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209534745|gb|ACI54680.1| exodeoxyribonuclease III Xth [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 263
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
L +A + + +P ++AGDFN I
Sbjct: 126 RRLHDYAAELLALEVPSILAGDFNVMPTEIDVYKPERWLDDALFRPEVRKAYAHLVGQGW 185
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + S + D+ + + S
Sbjct: 186 TDAVRHLHPHERIYTFWKYWRNSFERDAGLRIDHFLLSPAVAPWLRSATVRRKPRGWEHT 245
Query: 109 STHCPLTIEYD 119
S H P+ IE D
Sbjct: 246 SDHAPVMIELD 256
>gi|148548255|ref|YP_001268357.1| exodeoxyribonuclease III [Pseudomonas putida F1]
gi|148512313|gb|ABQ79173.1| Exodeoxyribonuclease III [Pseudomonas putida F1]
Length = 265
Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLL- 52
L + A ++G P ++AGDFN + + +Q++ G L
Sbjct: 131 LIQHARSLYESGHPTLLAGDFNVVPTDMDIYNPRSWLKDALLQPESRACYQRLLDQGWLD 190
Query: 53 --IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ + D+ + + + +K S
Sbjct: 191 AIRHLYPDERVYTFWDYFRNHWARNAGLRIDHLLLNPELAPYLKRAGVDAWVRNEAKASD 250
Query: 111 HCPLTIEY 118
H P+ IE
Sbjct: 251 HAPVWIEL 258
>gi|261391913|emb|CAX49373.1| exodeoxyribonuclease III (exonuclease III; EXO III) [Neisseria
meningitidis 8013]
Length = 256
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 19/137 (13%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ V+ GDFN D +++ +
Sbjct: 120 KEQWFAALTEFVRDEMTRYGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFKNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ ++
Sbjct: 180 LDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMVEALKDVRVDLETR 239
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+ E+D+
Sbjct: 240 ALERPSDHAPVAAEFDW 256
>gi|163746501|ref|ZP_02153859.1| exodeoxyribonuclease III, putative [Oceanibulbus indolifex HEL-45]
gi|161380386|gb|EDQ04797.1| exodeoxyribonuclease III, putative [Oceanibulbus indolifex HEL-45]
Length = 260
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
L+ A+ + PF++AGD+N + W+++ G
Sbjct: 128 MARLQARAEALLAEETPFLMAGDYNIIPQAEDAAKPDSWREDALFRPESRAAWRRLVNLG 187
Query: 51 LLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
L F + ++ +FL+ + + R K
Sbjct: 188 LTDAFRARTQGPGHYSFWDYQAGAWNRNNGIRIDHFLLSPTVADRLRDCQIDRDVRGRDK 247
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 248 PSDHVPVWVEL 258
>gi|312198907|ref|YP_004018968.1| exodeoxyribonuclease III Xth [Frankia sp. EuI1c]
gi|311230243|gb|ADP83098.1| exodeoxyribonuclease III Xth [Frankia sp. EuI1c]
Length = 305
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 32/130 (24%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPD 49
L+ + + P + GDFN D +
Sbjct: 131 ALRDTVAE-VAAHQPVMALGDFNIAPTDADVWDPADFVGATHVTEPERAALRELTGVGLI 189
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+L ++ R + D D + + + + + S
Sbjct: 190 DVLRARWPDETVYTYWDYRALCFPKNMGMRIDLTLAGADVAKRVAAVYVDRAARKGTGTS 249
Query: 110 THCPLTIEYD 119
H P+ ++ D
Sbjct: 250 DHAPVIVDLD 259
>gi|296535508|ref|ZP_06897694.1| exodeoxyribonuclease III [Roseomonas cervicalis ATCC 49957]
gi|296264163|gb|EFH10602.1| exodeoxyribonuclease III [Roseomonas cervicalis ATCC 49957]
Length = 255
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 32/132 (24%), Gaps = 19/132 (14%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------TDDFWQKMD 47
L+ A ++ P+ I GDFN + +
Sbjct: 125 MRRLRALAQARLDAFTPYAILGDFNVCPTELDLAPGALPPTDALVRPETRAEFRALANLG 184
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
L + + + D+ + + + + +
Sbjct: 185 LTDALRALHPGERLYTYWDYG-PAFEGNRGLRIDHAMLSPELAERLARAWVDTAPRSQEQ 243
Query: 108 LSTHCPLTIEYD 119
S H PL +E +
Sbjct: 244 PSDHTPLLVELE 255
>gi|256961018|ref|ZP_05565189.1| exonuclease III [Enterococcus faecalis Merz96]
gi|293384592|ref|ZP_06630458.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|293386821|ref|ZP_06631392.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|312906418|ref|ZP_07765426.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|312979423|ref|ZP_07791111.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|256951514|gb|EEU68146.1| exonuclease III [Enterococcus faecalis Merz96]
gi|291078138|gb|EFE15502.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|291083824|gb|EFE20787.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|310627572|gb|EFQ10855.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|311287794|gb|EFQ66350.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|315170467|gb|EFU14484.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
Length = 251
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + + ++ + P ++ GD N I + + +
Sbjct: 113 LKRLAYRMTWEDAFRAYLNE-LNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEER 171
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 172 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 231
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 232 KIHTDILG----SDHCPVEVVLDF 251
>gi|227326084|ref|ZP_03830108.1| exonuclease III [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 268
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 30/139 (21%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + +Q P ++ GD N +
Sbjct: 130 QDLQTYLEQHHSATQPLIVMGDVNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMAR 189
Query: 43 WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q + R+ D + D + V+
Sbjct: 190 LQDWGLIDTFRAANPDSNDRFSWFDYRSAGFDDNRGLRIDLILASTFLAERCVATGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ ++
Sbjct: 250 IRGMEKPSDHAPIWAQFSL 268
>gi|83645532|ref|YP_433967.1| exonuclease III [Hahella chejuensis KCTC 2396]
gi|83633575|gb|ABC29542.1| exodeoxyribonuclease III [Hahella chejuensis KCTC 2396]
Length = 270
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 36/137 (26%), Gaps = 28/137 (20%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TDDFWQKMDPD 49
+ Q+ P V+ GD N ++ ++
Sbjct: 134 DFLQQR-SPDQPIVVMGDMNVSHTDSDIGIGEENRKRWLRTGKCSFLPEEREWLNRLLDW 192
Query: 50 GLLIRFPQE----KESTCNVIKRNKSSLDYFVIDRDNKNF--LIDNSFSIVSYDQSDLDT 103
GL+ F Q K+ R++ D + V S
Sbjct: 193 GLVDTFRQHFPDVKDRYSWFDYRSRGFEDNPKRGLRIDLILATQPLAARCVDAGVSYEIR 252
Query: 104 RRSKLSTHCPLTIEYDF 120
K S HCP+ ++D
Sbjct: 253 SMEKASDHCPIWADFDL 269
>gi|315148697|gb|EFT92713.1| exodeoxyribonuclease III [Enterococcus faecalis TX4244]
Length = 251
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + + ++ + P ++ GD N I + + +
Sbjct: 113 LKRLAYRMTWEDAFRAYLNE-LNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEER 171
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 172 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 231
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 232 KIHTDILG----SDHCPVEVVLDF 251
>gi|256616763|ref|ZP_05473609.1| exonuclease III [Enterococcus faecalis ATCC 4200]
gi|256596290|gb|EEU15466.1| exonuclease III [Enterococcus faecalis ATCC 4200]
Length = 251
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + + ++ + P ++ GD N I + + +
Sbjct: 113 LKRLAYRMTWEDAFRAYLNE-LNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEER 171
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 172 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 231
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 232 KIHTDILG----SDHCPVEVVLDF 251
>gi|229544881|ref|ZP_04433606.1| exodeoxyribonuclease [Enterococcus faecalis TX1322]
gi|256963841|ref|ZP_05568012.1| exonuclease III [Enterococcus faecalis HIP11704]
gi|257081702|ref|ZP_05576063.1| exonuclease III [Enterococcus faecalis E1Sol]
gi|257087702|ref|ZP_05582063.1| exonuclease III [Enterococcus faecalis D6]
gi|257416904|ref|ZP_05593898.1| exonuclease III [Enterococcus faecalis AR01/DG]
gi|257421653|ref|ZP_05598643.1| exodeoxyribonuclease [Enterococcus faecalis X98]
gi|307271787|ref|ZP_07553058.1| exodeoxyribonuclease III [Enterococcus faecalis TX0855]
gi|307278718|ref|ZP_07559785.1| exodeoxyribonuclease III [Enterococcus faecalis TX0860]
gi|307288645|ref|ZP_07568626.1| exodeoxyribonuclease III [Enterococcus faecalis TX0109]
gi|229309982|gb|EEN75969.1| exodeoxyribonuclease [Enterococcus faecalis TX1322]
gi|256954337|gb|EEU70969.1| exonuclease III [Enterococcus faecalis HIP11704]
gi|256989732|gb|EEU77034.1| exonuclease III [Enterococcus faecalis E1Sol]
gi|256995732|gb|EEU83034.1| exonuclease III [Enterococcus faecalis D6]
gi|257158732|gb|EEU88692.1| exonuclease III [Enterococcus faecalis ARO1/DG]
gi|257163477|gb|EEU93437.1| exodeoxyribonuclease [Enterococcus faecalis X98]
gi|295113675|emb|CBL32312.1| exodeoxyribonuclease III [Enterococcus sp. 7L76]
gi|306500399|gb|EFM69735.1| exodeoxyribonuclease III [Enterococcus faecalis TX0109]
gi|306504579|gb|EFM73782.1| exodeoxyribonuclease III [Enterococcus faecalis TX0860]
gi|306511665|gb|EFM80664.1| exodeoxyribonuclease III [Enterococcus faecalis TX0855]
gi|315025498|gb|EFT37430.1| exodeoxyribonuclease III [Enterococcus faecalis TX2137]
gi|315032586|gb|EFT44518.1| exodeoxyribonuclease III [Enterococcus faecalis TX0017]
gi|315143871|gb|EFT87887.1| exodeoxyribonuclease III [Enterococcus faecalis TX2141]
gi|315155597|gb|EFT99613.1| exodeoxyribonuclease III [Enterococcus faecalis TX0043]
gi|315165304|gb|EFU09321.1| exodeoxyribonuclease III [Enterococcus faecalis TX1302]
gi|315168718|gb|EFU12735.1| exodeoxyribonuclease III [Enterococcus faecalis TX1341]
gi|327535952|gb|AEA94786.1| exodeoxyribonuclease III [Enterococcus faecalis OG1RF]
Length = 251
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + + ++ + P ++ GD N I + + +
Sbjct: 113 LKRLAYRMTWEDAFRAYLNE-LNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEER 171
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 172 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 231
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 232 KIHTDILG----SDHCPVEVVLDF 251
>gi|163753486|ref|ZP_02160610.1| exodeoxyribonuclease III [Kordia algicida OT-1]
gi|161327218|gb|EDP98543.1| exodeoxyribonuclease III [Kordia algicida OT-1]
Length = 253
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 36/131 (27%), Gaps = 21/131 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM-----------------DP 48
+ +K++ K V+ GD+N I + + +
Sbjct: 126 MDEIKEYLANLRKEIPNLVVCGDYNICHEEIDIHNPKMKGVSGFLPEERAWIGSFIDSGF 185
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+E R + + ++ + + L +K
Sbjct: 186 IDSFRHLNKEPHHYSWWSYRANARANNKGW--RIDYNMVGKALKDNITRATILP--EAKH 241
Query: 109 STHCPLTIEYD 119
S HCP+ +E D
Sbjct: 242 SDHCPILVEID 252
>gi|159044435|ref|YP_001533229.1| putative Exodeoxyribonuclease III [Dinoroseobacter shibae DFL 12]
gi|157912195|gb|ABV93628.1| putative Exodeoxyribonuclease III [Dinoroseobacter shibae DFL 12]
Length = 259
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-FWQ-----------------KMD 47
LK A + + P ++AGD+N W+ +
Sbjct: 127 MARLKTRAAELLAAEEPALMAGDYNIIPLDEDAARPEAWRKDALALPASRAAFREILNLG 186
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + I D+ D + + K
Sbjct: 187 FTDAFRTRVPGPGHYSFWDYQAGAWQRNDGIRIDHILMTPDCADLMRDCRIDAAVRGGEK 246
Query: 108 LSTHCPLTIEY 118
S H P+ ++
Sbjct: 247 PSDHVPVVVDL 257
>gi|116251598|ref|YP_767436.1| exodeoxyribonuclease [Rhizobium leguminosarum bv. viciae 3841]
gi|115256246|emb|CAK07327.1| putative exodeoxyribonuclease [Rhizobium leguminosarum bv. viciae
3841]
Length = 264
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 20/136 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
L ++A + ++ +P ++AGDFN I + +D
Sbjct: 126 RRLHEYAAELLELEVPSILAGDFNVMPTEIDVYKPE-RWLDDALFRPEVRRAYADLVAQG 184
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ E+ S + D+ + + S
Sbjct: 185 WTDAVRHLHPEERIYTFWKYWRNSFERDAGLRIDHFLLSPAVAPWLRSATVRKKPRGWEH 244
Query: 108 LSTHCPLTIEYDFEKG 123
S H P+ IE D K
Sbjct: 245 TSDHAPVMIELDVSKA 260
>gi|110680357|ref|YP_683364.1| exodeoxyribonuclease III, putative [Roseobacter denitrificans OCh
114]
gi|109456473|gb|ABG32678.1| exodeoxyribonuclease III, putative [Roseobacter denitrificans OCh
114]
Length = 260
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIG----------------DTDDFWQKMDPD 49
L A + FV+AGD+N + F + ++
Sbjct: 128 MARLYDRAKALLADETTFVMAGDYNIIPQAEDAAKPESWREDALFRLESRTAFRRLLNLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ + ++ + L+ +V R K
Sbjct: 188 LTEAFRARTQGPGHYSFWDYQAGAWNRNNGIRIDHLLLSPQAADMLVDCQIDKEVRGRDK 247
Query: 108 LSTHCPLTIEY 118
S H P+ ++
Sbjct: 248 PSDHVPVWVDL 258
>gi|253688361|ref|YP_003017551.1| exodeoxyribonuclease III [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251754939|gb|ACT13015.1| exodeoxyribonuclease III [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 272
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 30/139 (21%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + +Q P ++ GD N +
Sbjct: 134 QDLQTYLEQHHSATQPLIVMGDVNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMAR 193
Query: 43 WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q E R+ D + D + V+
Sbjct: 194 LQGWGLIDTFRAANPESNDRFSWFDYRSAGFDDNRGLRIDLILASNFLADRCVATGIDYD 253
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ ++
Sbjct: 254 IRGMEKPSDHAPIWAQFAL 272
>gi|302343712|ref|YP_003808241.1| exodeoxyribonuclease III [Desulfarculus baarsii DSM 2075]
gi|301640325|gb|ADK85647.1| exodeoxyribonuclease III [Desulfarculus baarsii DSM 2075]
Length = 259
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 31/132 (23%), Gaps = 19/132 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDP 48
L+ W + + G V GDFN I D
Sbjct: 127 RRLRAWLEARFSPGEALVCCGDFNVAPQDIDLHDPVKLAGQVGCHPDERAAYANVLDWGL 186
Query: 49 DGLLIRFPQEKESTCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + R ++ R + D+ + + R K
Sbjct: 187 EDVFRRLHPAQKQFTFWDYRLRGALSRDLGWRIDHILASAGLAPACGQCLVDMAPRRLEK 246
Query: 108 LSTHCPLTIEYD 119
S H P+ +
Sbjct: 247 PSDHTPILARFS 258
>gi|313206096|ref|YP_004045273.1| exodeoxyribonuclease iii xth [Riemerella anatipestifer DSM 15868]
gi|312445412|gb|ADQ81767.1| exodeoxyribonuclease III Xth [Riemerella anatipestifer DSM 15868]
gi|315023722|gb|EFT36725.1| Exodeoxyribonuclease III [Riemerella anatipestifer RA-YM]
gi|325336460|gb|ADZ12734.1| Exonuclease III [Riemerella anatipestifer RA-GD]
Length = 253
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 23/127 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGL 51
+ + KT +I+GDFN +I D F ++
Sbjct: 130 AYIKELRKTIPNLIISGDFNICHQAIDIHDPVRLKNVSGFLPIEREWMTEFLKECGLIDS 189
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F E R + + + +S L + S H
Sbjct: 190 FRYFNTEPNQYSWWSYRQNARANNKGW--RLDYHFVSDSLESRLSR--GLILSDAYHSDH 245
Query: 112 CPLTIEY 118
CP+ +E
Sbjct: 246 CPVLVEL 252
>gi|317476209|ref|ZP_07935460.1| exodeoxyribonuclease III [Bacteroides eggerthii 1_2_48FAA]
gi|316907620|gb|EFV29323.1| exodeoxyribonuclease III [Bacteroides eggerthii 1_2_48FAA]
Length = 254
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 38/140 (27%), Gaps = 28/140 (20%)
Query: 3 SQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q E +++ + +T ++ GD+N +I D +
Sbjct: 117 ERQAFKMVWLEKFRQYVVELQRTRPKLILCGDYNICHEAIDIHDPVRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+K+ R S +++ S + +
Sbjct: 177 WMTRFLNEGFIDTFRLLHPDKQEYTWWSYRFNSRAKNKGW--RIDYCMVNESVRPML--K 232
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ S HCP+ +E
Sbjct: 233 DARILNDAVHSDHCPMMLEI 252
>gi|242239395|ref|YP_002987576.1| exodeoxyribonuclease III [Dickeya dadantii Ech703]
gi|242131452|gb|ACS85754.1| exodeoxyribonuclease III [Dickeya dadantii Ech703]
Length = 268
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 31/139 (22%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + + P +I GD N +
Sbjct: 130 QDLQHYLEHHHNAEQPVLIMGDMNISPTDLDIGIGEDSRKRWLRTGKCSFLPEEREWMLR 189
Query: 43 WQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q E ++ R+ D + D + +
Sbjct: 190 LQDWGLVDTFRAQNPECRDRFSWFDYRSSGFDDNRGLRIDLILASQPLASRCSATGIDYA 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ E+ F
Sbjct: 250 IRSMEKPSDHAPIWAEFAF 268
>gi|312900096|ref|ZP_07759412.1| exodeoxyribonuclease III [Enterococcus faecalis TX0470]
gi|311292731|gb|EFQ71287.1| exodeoxyribonuclease III [Enterococcus faecalis TX0470]
Length = 251
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + + ++ + P ++ GD N I + + +
Sbjct: 113 LKRLAYRMTWEDAFRAYLNE-LNQEKPVILCGDLNVAHQKIDLKNWKTNQKNAGFTPEER 171
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 172 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 231
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 232 KIHTDILG----SDHCPVEVVLDF 251
>gi|260642288|ref|ZP_05415267.2| exodeoxyribonuclease III [Bacteroides finegoldii DSM 17565]
gi|260622802|gb|EEX45673.1| exodeoxyribonuclease III [Bacteroides finegoldii DSM 17565]
Length = 255
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 35/141 (24%), Gaps = 28/141 (19%)
Query: 3 SQQG---EWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q WL+ + + KT ++ GD+N I D +
Sbjct: 118 ERQAFKMVWLEDFQKYVTELRKTRPNLILCGDYNICHEPIDIHDPVRNAKNSGFLPEERE 177
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
EK+ R S D + S
Sbjct: 178 WMTRFLSAGFIDSFRLLYPEKQEYTWWSYRFNSRAKNKGWRIDYCMTSEPVRRWLKSARI 237
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
+ S HCP+ +E D
Sbjct: 238 LNEAV----HSDHCPMVLEID 254
>gi|88607141|ref|YP_505100.1| exodeoxyribonuclease III [Anaplasma phagocytophilum HZ]
gi|88598204|gb|ABD43674.1| exodeoxyribonuclease III [Anaplasma phagocytophilum HZ]
Length = 273
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 19/132 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
E LK +KT + GDFN I D ++++ +G+
Sbjct: 141 EHLKDRLLNIMKTEDFLIAGGDFNVAPEEIDVHDPKALDGRLCFHILERAKFREILNNGI 200
Query: 52 LIRFPQ----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ F +++ R + + D + ++
Sbjct: 201 VDIFRTFVGIDRKEFSWWNYREGGWQNNRGLRIDALLSSPQIADKVLDCSILSKVRGWDT 260
Query: 108 LSTHCPLTIEYD 119
S H P+ + D
Sbjct: 261 PSDHAPVMGDID 272
>gi|294635923|ref|ZP_06714368.1| exodeoxyribonuclease III [Edwardsiella tarda ATCC 23685]
gi|291090755|gb|EFE23316.1| exodeoxyribonuclease III [Edwardsiella tarda ATCC 23685]
Length = 269
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKES----- 61
L+ + Q + +I GD N I D+ ++ G P+E+
Sbjct: 132 LQDYLQQSLTPQDQVLIMGDMNISPADIDIGIGDESRRRWLRSGKCSFLPEERAWMDRLL 191
Query: 62 ------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D + V
Sbjct: 192 SWGLVDTYRQAHPERDDRFSWFDYRSKGFDDNRGLRIDLLLASQPLAQRCVDSGIDYEIR 251
Query: 104 RRSKLSTHCPLTIEYDFE 121
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEFTLS 269
>gi|317124329|ref|YP_004098441.1| exodeoxyribonuclease III Xth [Intrasporangium calvum DSM 43043]
gi|315588417|gb|ADU47714.1| exodeoxyribonuclease III Xth [Intrasporangium calvum DSM 43043]
Length = 294
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 36/134 (26%), Gaps = 20/134 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDG 50
+ + ++ + G V+ GD N + F + D
Sbjct: 161 DAMTGRLERAAQAGALMVVTGDLNVAHREDDLKNWKGNLRKSGFLPEERDYFDRWFDELA 220
Query: 51 LLI----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ R K+ + D + + S ++ +
Sbjct: 221 WVDVHRVLHGPGPGPYTWWSWRGKAFDNDAGWRIDYQLASASLAPLARSASVGRAESYAA 280
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+ ++YD
Sbjct: 281 RWSDHAPVIVDYDL 294
>gi|91763300|ref|ZP_01265264.1| exodeoxyribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
gi|91717713|gb|EAS84364.1| exodeoxyribonuclease III [Candidatus Pelagibacter ubique HTCC1002]
Length = 258
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 36/133 (27%), Gaps = 21/133 (15%)
Query: 7 EWLKKWADQKI---KTGIPFVIAGDFNRKINSIGDTDDF------------------WQK 45
+WL K Q K ++AGDFN ++ +
Sbjct: 125 DWLDKLIKQLKTLSKKNENIILAGDFNILPSAEDAYNIKGFEDDALYRLEIRKKFREMIN 184
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ EKE + + D+ + + + + +
Sbjct: 185 LGFHDAYRHIHGEKEGYTYWDYMRGAWQKNNGLRIDHFLVSNSLLNIVKNVNINKDPRGK 244
Query: 106 SKLSTHCPLTIEY 118
K S H P+ IE
Sbjct: 245 EKPSDHTPIEIEL 257
>gi|329940384|ref|ZP_08289665.1| exonuclease [Streptomyces griseoaurantiacus M045]
gi|329300445|gb|EGG44342.1| exonuclease [Streptomyces griseoaurantiacus M045]
Length = 259
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGL 51
E L+ PF + GD+N D + GL
Sbjct: 128 EALRAAVAGDAAGDRPFAVLGDYNVAPTDEDVYDRAAFEGSTHVTPAERAALASLREAGL 187
Query: 52 LIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
P+ + R + D + ++ + +
Sbjct: 188 TDVVPRPLKYDHPYTYWDYRQLCFPKNRGMRIDLVYGNEPFAKAVQDAYVDREERKGKGA 247
Query: 109 STHCPLTIEYD 119
S H P+ ++ +
Sbjct: 248 SDHAPVVVDLE 258
>gi|290475444|ref|YP_003468332.1| exonuclease III [Xenorhabdus bovienii SS-2004]
gi|289174765|emb|CBJ81566.1| exonuclease III [Xenorhabdus bovienii SS-2004]
Length = 268
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 35/137 (25%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L ++ ++ +I GD N + + +
Sbjct: 130 QDLNRYLEKNQSPDSHILIMGDMNISPTDLDIGIGENNQKRWLKTGKCSFLPEEREWMGR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
D + Q E+ R+K D + D + +S
Sbjct: 190 LKDWGLIDTFRAQHPEASDQFSWFDYRSKGFDDNRGLRIDLLLASRPLAERCLSSGIDYA 249
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 250 IRSMEKPSDHAPVWAEF 266
>gi|85700212|gb|ABC74556.1| exonuclease III [Rhizobium leguminosarum bv. trifolii TA1]
Length = 215
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
E L+ +A +++ V+AGD+N D + +
Sbjct: 81 MERLRTFAAERLAYEDMLVLAGDYNVIPEPHDCFDPKVWENDALFLPQTREAFRKLENLG 140
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + + I D+ + + + S K
Sbjct: 141 LTDAVRATTDATQFYSFWDYQAGAWPKNNGIRIDHLLLSPEAADRMTSAAIEKHVRAWEK 200
Query: 108 LSTHCPLTIEYDF 120
S H P+ +DF
Sbjct: 201 PSDHVPVIAYFDF 213
>gi|327188747|gb|EGE55945.1| exodeoxyribonuclease III protein [Rhizobium etli CNPAF512]
Length = 263
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 35/133 (26%), Gaps = 18/133 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
L +A + ++ +P ++AGDFN I + ++ G
Sbjct: 126 RRLSAYAAELLEIEVPSILAGDFNVMPTEIDVYKPERWLDDALFRPEVRKAYAQLVAQGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ S + D+ + + S
Sbjct: 186 TDAVRHLHPGERIYTFWKYWRNSFERDAGLRIDHLLLSPTVAPWLRSARVRRKPRGWEHT 245
Query: 109 STHCPLTIEYDFE 121
S H P+ IE D
Sbjct: 246 SDHAPVMIELDIP 258
>gi|160894365|ref|ZP_02075142.1| hypothetical protein CLOL250_01918 [Clostridium sp. L2-50]
gi|156864066|gb|EDO57497.1| hypothetical protein CLOL250_01918 [Clostridium sp. L2-50]
Length = 262
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 33/130 (25%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+++ Q ++ P V+ GD N I + + +
Sbjct: 138 REYLKQ-LEQTKPVVVCGDMNVAHTEIDLKNPKTNRKNAGFTDEEREKFSTLLDSGFVDT 196
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + R K+ D +V S
Sbjct: 197 FRFFNPDAEGIYSWWSYRFKAREKNAGWRIDYFLTSKVLESRLVDAKIHTEVLG----SD 252
Query: 111 HCPLTIEYDF 120
HCP+ ++ D
Sbjct: 253 HCPVELDIDL 262
>gi|21958993|gb|AAM85715.1|AE013819_1 exonuclease III [Yersinia pestis KIM 10]
gi|45436631|gb|AAS62185.1| exodeoxyribonuclease III [Yersinia pestis biovar Microtus str.
91001]
Length = 271
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 13/137 (9%), Positives = 33/137 (24%), Gaps = 25/137 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+++ ++++ +I GD N + + Q
Sbjct: 135 LQRYLEEQLSPEAQVLIMGDLNISPTDLDIGIGEDNRKRWLRTGKCSFLPEEREWLERLQ 194
Query: 45 KMDPDGLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ R++ + + D + ++
Sbjct: 195 NWGLVDTFRAANPDCNDHFSWFDYRSRGFDENRGLRIDLLLASQPLAARCIATGIDYAIR 254
Query: 104 RRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 255 GMEKPSDHAPVWSEFSL 271
>gi|319896463|ref|YP_004134656.1| exodeoxyribonuclease iii [Haemophilus influenzae F3031]
gi|317431965|emb|CBY80313.1| exodeoxyribonuclease III [Haemophilus influenzae F3031]
Length = 267
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKEST---- 62
L+++ +++ P +I GD N + + D+ ++ G P+E+
Sbjct: 132 LQQYLEKEHDKSNPILIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLPEERAWYQRLY 191
Query: 63 -------------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ + V +
Sbjct: 192 DYGLEDSFRKLNPTANDKFSWFDYRSKGFDDNRGLRIDHILVSRKLAERCVDVGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEF 266
>gi|154507728|ref|ZP_02043370.1| hypothetical protein ACTODO_00210 [Actinomyces odontolyticus ATCC
17982]
gi|153797362|gb|EDN79782.1| hypothetical protein ACTODO_00210 [Actinomyces odontolyticus ATCC
17982]
Length = 275
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 42/138 (30%), Gaps = 20/138 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------- 42
L + G + + ++ GI ++ GDFN + +
Sbjct: 137 LPRIGARMAELIAEEAAGGISSLVCGDFNVVRSEADIKNWKPNHNKRAGVLDEEIAFLNR 196
Query: 43 -WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
++ D + + R ++ ++ D + S++
Sbjct: 197 WVEEGWRDTVRDLAGDVQGPYSWWSWRGQAFVNNAGWRIDYQYATPALGERARSFEIGRA 256
Query: 102 DTRRSKLSTHCPLTIEYD 119
D + S H P+++ Y+
Sbjct: 257 DEYAERFSDHAPVSVTYE 274
>gi|294670922|ref|ZP_06735778.1| hypothetical protein NEIELOOT_02626 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307409|gb|EFE48652.1| hypothetical protein NEIELOOT_02626 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 261
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 14/135 (10%), Positives = 34/135 (25%), Gaps = 19/135 (14%)
Query: 3 SQQ-GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
+Q L ++ ++ ++ GDFN ++Q +
Sbjct: 120 KEQWFAALTEFLRNELSRHEKLILLGDFNIAPADADCYAPEKWHEKILCSSIERQWFQNL 179
Query: 47 DP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
L + E R + D+ + ++
Sbjct: 180 LDLGLTDSLRQIHPEGAFYTWFDYRGAMFQRKQGLRIDHILTSRTMASALQDMQVDYDTR 239
Query: 104 RRSKLSTHCPLTIEY 118
+ S H P+ ++
Sbjct: 240 ALERPSDHAPVWAQF 254
>gi|294788414|ref|ZP_06753657.1| exodeoxyribonuclease III [Simonsiella muelleri ATCC 29453]
gi|294483845|gb|EFG31529.1| exodeoxyribonuclease III [Simonsiella muelleri ATCC 29453]
Length = 256
Score = 69.9 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 27/130 (20%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPD 49
L + ++ V+ GDFN D +
Sbjct: 126 ALTHFVRDELARYADLVLLGDFNIAPTDEDVYDPKKWHEQIHCSSEERSWFKNLLDLGLT 185
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
L + R + D+ + + + S
Sbjct: 186 DGLRHANPIGKFYTWWDYRGAMFEKGLGLRIDHILVSDNLIDKLQQVVVDTHTRANERPS 245
Query: 110 THCPLTIEYD 119
H P+ ++
Sbjct: 246 DHAPVHADFQ 255
>gi|238788459|ref|ZP_04632252.1| Exodeoxyribonuclease III [Yersinia frederiksenii ATCC 33641]
gi|238723372|gb|EEQ15019.1| Exodeoxyribonuclease III [Yersinia frederiksenii ATCC 33641]
Length = 271
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 33/137 (24%), Gaps = 25/137 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+++ +Q++ +I GD N + + Q
Sbjct: 135 LQQYLEQQLSADAQILIMGDLNISPTDLDIGIGEESRKRWLRTGKCSFLPEERAWLERLQ 194
Query: 45 KMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ R++ + + D + ++
Sbjct: 195 SWGLVDTFRAANPDCNDQFSWFDYRSRGFDENRGLRIDLLLASQPLAARCIATGIDYKIR 254
Query: 104 RRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 255 GMEKPSDHAPVWSEFAL 271
>gi|146282538|ref|YP_001172691.1| exonuclease III [Pseudomonas stutzeri A1501]
gi|145570743|gb|ABP79849.1| exodeoxyribonuclease III [Pseudomonas stutzeri A1501]
Length = 301
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 29/138 (21%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ +Q+ + GDFN + +
Sbjct: 164 LQALLEQRFSPDESLALMGDFNISPQDCDIGIGEVNAKRWLRTGKCSFLPEEREWLERIK 223
Query: 45 KMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDL 101
E + R++ D L ++
Sbjct: 224 GWGLQDSFRTLNPEVVDRFSWFDYRSRGFEDEPRRGLRIDYILTTHALHERVTDCGVDYD 283
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S HCP+ IE
Sbjct: 284 IRAMEKPSDHCPVWIELR 301
>gi|326386341|ref|ZP_08207964.1| exodeoxyribonuclease III [Novosphingobium nitrogenifigens DSM
19370]
gi|326209002|gb|EGD59796.1| exodeoxyribonuclease III [Novosphingobium nitrogenifigens DSM
19370]
Length = 267
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 30/131 (22%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPD 49
E LK Q +P ++ GD+N + + +
Sbjct: 133 MERLKTRMAQIAAEEVPALVIGDYNVIPRDNDIWSTRAMADDALMQPESRAAYRRLLHAG 192
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
++ + L+ +V+ R K
Sbjct: 193 WTDALGLLNPRGGVYTFWDYQAGAWQRDHGFRIDHALLSPELADRLVAAGVDKTYRGREK 252
Query: 108 LSTHCPLTIEY 118
S H P+ +
Sbjct: 253 ASDHAPVWVSI 263
>gi|327191803|gb|EGE58803.1| exodeoxyribonuclease III protein [Rhizobium etli CNPAF512]
Length = 263
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
E L+ +A +++ V+AGD+N D + +
Sbjct: 129 MERLRSFAAERLDYEEMLVLAGDYNVIPEPHDCFDPKVWENDALFLPQTREAFRKLENLG 188
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + + I D+ + + + S K
Sbjct: 189 LTDAVRATTDATQLYSFWDYQAGAWPKNNGIRIDHLLLSPEAADRMTSAAIEKHVRAWEK 248
Query: 108 LSTHCPLTIEYDF 120
S H P+ +DF
Sbjct: 249 PSDHVPVIAYFDF 261
>gi|319774993|ref|YP_004137481.1| exodeoxyribonuclease III [Haemophilus influenzae F3047]
gi|329123105|ref|ZP_08251675.1| exodeoxyribonuclease III [Haemophilus aegyptius ATCC 11116]
gi|317449584|emb|CBY85789.1| exodeoxyribonuclease III [Haemophilus influenzae F3047]
gi|327471660|gb|EGF17102.1| exodeoxyribonuclease III [Haemophilus aegyptius ATCC 11116]
Length = 267
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKEST---- 62
L+++ +++ P +I GD N + + D+ ++ G P+E+
Sbjct: 132 LQQYLEKEHDKSNPILIMGDMNISPSDLDIGIGDENRKRWLSTGKCSFLPEERAWYQRLY 191
Query: 63 -------------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ + V +
Sbjct: 192 DYGLEDSFRKLNPTANDKFSWFDYRSKGFDDNRGLRIDHILVSQKLAERCVDVGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEF 266
>gi|238754917|ref|ZP_04616267.1| Exodeoxyribonuclease III [Yersinia ruckeri ATCC 29473]
gi|238706928|gb|EEP99295.1| Exodeoxyribonuclease III [Yersinia ruckeri ATCC 29473]
Length = 268
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 14/139 (10%), Positives = 33/139 (23%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + Q++ +I GD N +
Sbjct: 130 QDLQNYLAQELTPEAQVLIMGDINISPTDRDIGIGEDNRKRWLRTGKCSFLPEEREWLER 189
Query: 43 WQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q + ++ R++ + + D + ++
Sbjct: 190 LQNWGLVDTFRAANPDCEDRYSWFDYRSRGFDENRGLRIDVLMASKPLAERCIATGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 250 IRSMEKPSDHAPVWSEFSL 268
>gi|238797343|ref|ZP_04640843.1| Exodeoxyribonuclease III [Yersinia mollaretii ATCC 43969]
gi|238718774|gb|EEQ10590.1| Exodeoxyribonuclease III [Yersinia mollaretii ATCC 43969]
Length = 271
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 33/137 (24%), Gaps = 25/137 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+++ +Q++ +I GD N + + Q
Sbjct: 135 LQQYLEQQLSADSQVLIMGDINISPTDLDIGIGEENRKRWLRTGKCSFLPEERAWLERLQ 194
Query: 45 KMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ R++ + + D + ++
Sbjct: 195 SWGLVDTFRAANPDCNDQFSWFDYRSRGFDENRGLRIDLLLASQPLAARCIATGIDYEIR 254
Query: 104 RRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 255 GMEKPSDHAPVWSEFAL 271
>gi|94499690|ref|ZP_01306227.1| exodeoxyribonuclease III [Oceanobacter sp. RED65]
gi|94428444|gb|EAT13417.1| exodeoxyribonuclease III [Oceanobacter sp. RED65]
Length = 271
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 27/139 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TDDFWQKMD 47
LK + ++ + V+ GD N ++ ++ Q +
Sbjct: 133 LKDYLNKHLSPDNHIVVMGDMNVALHDEDIGIGEQNRKRWLRTEKCAFLPEEREWLQGIL 192
Query: 48 PDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDL 101
GL F + R+K D L+ S + D
Sbjct: 193 DWGLADSFRTQHPDTNDRYSWFDYRSKGFADDPKRGLRIDYILLSKSLMSKLKTADIDYD 252
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ +E +
Sbjct: 253 IRGMEKPSDHAPIYVELNL 271
>gi|254460874|ref|ZP_05074290.1| exodeoxyribonuclease III [Rhodobacterales bacterium HTCC2083]
gi|206677463|gb|EDZ41950.1| exodeoxyribonuclease III [Rhodobacteraceae bacterium HTCC2083]
Length = 259
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
L+ A+ + PF++AGD+N + + ++
Sbjct: 127 MARLQARAEALLAEETPFLMAGDYNIIPQDEDARHPEVWQEDALARPESRAAYRRLVNLG 186
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ ++ +FL+ + + V K
Sbjct: 187 LTEAFRARVHGPEHYSFWDYQAGAWNKDDGIRIDHFLLSPAVADILVDCQIDMHVRAGEK 246
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 247 PSDHVPVWVEL 257
>gi|158522569|ref|YP_001530439.1| exodeoxyribonuclease III [Desulfococcus oleovorans Hxd3]
gi|158511395|gb|ABW68362.1| exodeoxyribonuclease III [Desulfococcus oleovorans Hxd3]
Length = 262
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 30/127 (23%), Gaps = 20/127 (15%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
+AD K G VI GD+N N I + +
Sbjct: 137 AYADAYRKQGRSLVICGDYNTAHNEIDLKNPKANENTSGFMRIERDWLDKISADGYVDTF 196
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ R K+ F + + + S HC
Sbjct: 197 RHLYPDTVKYSWWTYRFKARERNVGW--RIDYFFVTEDIISKGWLKDAFIDNTVYGSDHC 254
Query: 113 PLTIEYD 119
P+ + +
Sbjct: 255 PVGLVLE 261
>gi|251792404|ref|YP_003007130.1| exonuclease III [Aggregatibacter aphrophilus NJ8700]
gi|247533797|gb|ACS97043.1| exodeoxyribonuclease III [Aggregatibacter aphrophilus NJ8700]
Length = 267
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKEST---- 62
L+++ +Q+ P +I GD N + + D+ ++ G P+E+E
Sbjct: 132 LQRYLEQEHNAENPVIIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLPEEREWYQRLY 191
Query: 63 -------------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ V +
Sbjct: 192 AYGLEDTFRYMNPTVNDKFSWFDYRSKGFDDNRGLRIDHILANKALVAHCVDTGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEF 266
>gi|54027277|ref|YP_121519.1| putative exonuclease [Nocardia farcinica IFM 10152]
gi|54018785|dbj|BAD60155.1| putative exonuclease [Nocardia farcinica IFM 10152]
Length = 303
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 27/129 (20%), Gaps = 20/129 (15%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDT----------------DDFWQKMDPD--GL 51
W + GD+N D F +D +
Sbjct: 151 ADWLAA--DPAAKIALVGDWNIAPTDDDVWSVEFFAGKTHTSQPERDAFAAILDTGFADV 208
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ F + D + ++V + S H
Sbjct: 209 MRPFAPGPGVYTYWDYTRLRFPRKEGMRIDFVLASPALAATVVDAGVDREARKGKGASDH 268
Query: 112 CPLTIEYDF 120
P+ E+D
Sbjct: 269 APVIAEFDL 277
>gi|116668987|ref|YP_829920.1| exodeoxyribonuclease III [Arthrobacter sp. FB24]
gi|116609096|gb|ABK01820.1| Exodeoxyribonuclease III [Arthrobacter sp. FB24]
Length = 294
Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats.
Identities = 13/138 (9%), Positives = 27/138 (19%), Gaps = 25/138 (18%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-----------------FW 43
ML + W + + GD+N D +
Sbjct: 160 MLKTHAQA---WVTEN--PEAQIALMGDWNIAPQDDDVWDIDFFRANAMTHVSEPERAAF 214
Query: 44 QKMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ + G + D + +
Sbjct: 215 RAFEDAGFQDVVRPHTPGPGVYTYWDYTQLRFPKKEGMRIDFVLASPALAARVTGASIDR 274
Query: 101 LDTRRSKLSTHCPLTIEY 118
+ + S H P+ +E
Sbjct: 275 EERKGKGASDHAPVIVEL 292
>gi|298385343|ref|ZP_06994901.1| exodeoxyribonuclease III [Bacteroides sp. 1_1_14]
gi|298261484|gb|EFI04350.1| exodeoxyribonuclease III [Bacteroides sp. 1_1_14]
Length = 254
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 35/141 (24%), Gaps = 28/141 (19%)
Query: 3 SQQG---EWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q WL+ + + KT ++ GD+N I D +
Sbjct: 118 ERQAFKMVWLEDFQKYVTELRKTRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEERE 177
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
EK+ R S D + S
Sbjct: 178 WMTRFLSAGFIDSFRLLYPEKQEYTWWSYRFNSRAKNKGWRIDYCMTSEPVRPMLKSASI 237
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
+ S HCP+ +E +
Sbjct: 238 LNDAV----HSDHCPMALEIE 254
>gi|332527156|ref|ZP_08403231.1| exodeoxyribonuclease iii, ap endonuclease, family 1 [Rubrivivax
benzoatilyticus JA2]
gi|332111582|gb|EGJ11564.1| exodeoxyribonuclease iii, ap endonuclease, family 1 [Rubrivivax
benzoatilyticus JA2]
Length = 258
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 33/133 (24%), Gaps = 20/133 (15%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINS--IGDTDDF------------------WQK 45
+ L + A + P V+AGD+N +
Sbjct: 125 MQRLHEHAATLVGLDAPVVLAGDYNVVPTDAVRDIYSPKGWQNDALLQPESRQAYQRLLE 184
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ L + + + D+ + + + + R
Sbjct: 185 LGFTDALATLHGDAAMYTYWDYFRQRWERNAGLRIDHLLLNAPAAARLKAAEVDRFIRGR 244
Query: 106 SKLSTHCPLTIEY 118
K S H P+ ++
Sbjct: 245 EKPSDHAPVWVDL 257
>gi|197106478|ref|YP_002131855.1| exodeoxyribonuclease III [Phenylobacterium zucineum HLK1]
gi|196479898|gb|ACG79426.1| exodeoxyribonuclease III [Phenylobacterium zucineum HLK1]
Length = 256
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGL 51
+ L A+ + +G P +AGDFN ++ W+++ G
Sbjct: 126 DRLIAHAEGLVASGAPVALAGDFNVVPTALDIYRVKPHTTDALQQPQTRAAWRRLLDQGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + D + + + R
Sbjct: 186 TDAVRALHPDAPMFSFWDYLRNAWDRDAGMRLDAVLLSPSLAPRLRAAGVDRDVRGRPGA 245
Query: 109 STHCPLTIEYD 119
S H P+ IE D
Sbjct: 246 SDHAPVWIELD 256
>gi|157804057|ref|YP_001492606.1| exodeoxyribonuclease VII large subunit [Rickettsia canadensis str.
McKiel]
gi|157785320|gb|ABV73821.1| exodeoxyribonuclease VII large subunit [Rickettsia canadensis str.
McKiel]
Length = 260
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 29/130 (22%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD- 49
E L + K +I GDFN I ++
Sbjct: 129 ESLINYLSTKKSFDEKTIIGGDFNIAPFDIDVYSPKALAETTCFTKVEQKKLRTILNSRF 188
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
L K+ R + D + + + + K
Sbjct: 189 EDLYRLMYPNKQEFSWWDYRAGCFEQNKGMRIDMILGCNNTIDYLENCYMDYNLRTQEKP 248
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 249 SDHIPVIANF 258
>gi|51596420|ref|YP_070611.1| exonuclease III [Yersinia pseudotuberculosis IP 32953]
gi|108807521|ref|YP_651437.1| exonuclease III [Yersinia pestis Antiqua]
gi|108811797|ref|YP_647564.1| exonuclease III [Yersinia pestis Nepal516]
gi|145598263|ref|YP_001162339.1| exonuclease III [Yersinia pestis Pestoides F]
gi|149365909|ref|ZP_01887944.1| exodeoxyribonuclease III [Yersinia pestis CA88-4125]
gi|153949149|ref|YP_001400949.1| exonuclease III [Yersinia pseudotuberculosis IP 31758]
gi|161484800|ref|NP_669464.2| exonuclease III [Yersinia pestis KIM 10]
gi|161511386|ref|NP_993308.2| exonuclease III [Yersinia pestis biovar Microtus str. 91001]
gi|162420660|ref|YP_001606769.1| exonuclease III [Yersinia pestis Angola]
gi|165927745|ref|ZP_02223577.1| exodeoxyribonuclease III [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165939329|ref|ZP_02227877.1| exodeoxyribonuclease III [Yersinia pestis biovar Orientalis str.
IP275]
gi|166009140|ref|ZP_02230038.1| exodeoxyribonuclease III [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166210881|ref|ZP_02236916.1| exodeoxyribonuclease III [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167401408|ref|ZP_02306905.1| exodeoxyribonuclease III [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167420251|ref|ZP_02312004.1| exodeoxyribonuclease III [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167426574|ref|ZP_02318327.1| exodeoxyribonuclease III [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|167469881|ref|ZP_02334585.1| exodeoxyribonuclease III [Yersinia pestis FV-1]
gi|170024319|ref|YP_001720824.1| exonuclease III [Yersinia pseudotuberculosis YPIII]
gi|186895466|ref|YP_001872578.1| exonuclease III [Yersinia pseudotuberculosis PB1/+]
gi|218929268|ref|YP_002347143.1| exonuclease III [Yersinia pestis CO92]
gi|229894844|ref|ZP_04510024.1| exonuclease III [Yersinia pestis Pestoides A]
gi|229897588|ref|ZP_04512744.1| exonuclease III [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229898233|ref|ZP_04513381.1| exonuclease III [Yersinia pestis biovar Orientalis str. India 195]
gi|229902093|ref|ZP_04517214.1| exonuclease III [Yersinia pestis Nepal516]
gi|270490729|ref|ZP_06207803.1| exodeoxyribonuclease III [Yersinia pestis KIM D27]
gi|294503787|ref|YP_003567849.1| exodeoxyribonuclease III [Yersinia pestis Z176003]
gi|51589702|emb|CAH21332.1| exodeoxyribonuclease III [Yersinia pseudotuberculosis IP 32953]
gi|108775445|gb|ABG17964.1| Exodeoxyribonuclease III [Yersinia pestis Nepal516]
gi|108779434|gb|ABG13492.1| Exodeoxyribonuclease III [Yersinia pestis Antiqua]
gi|115347879|emb|CAL20799.1| exodeoxyribonuclease III [Yersinia pestis CO92]
gi|145209959|gb|ABP39366.1| Exodeoxyribonuclease III [Yersinia pestis Pestoides F]
gi|149292322|gb|EDM42396.1| exodeoxyribonuclease III [Yersinia pestis CA88-4125]
gi|152960644|gb|ABS48105.1| exodeoxyribonuclease III [Yersinia pseudotuberculosis IP 31758]
gi|162353475|gb|ABX87423.1| exodeoxyribonuclease III [Yersinia pestis Angola]
gi|165912670|gb|EDR31299.1| exodeoxyribonuclease III [Yersinia pestis biovar Orientalis str.
IP275]
gi|165920359|gb|EDR37636.1| exodeoxyribonuclease III [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165991695|gb|EDR43996.1| exodeoxyribonuclease III [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166208061|gb|EDR52541.1| exodeoxyribonuclease III [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166961946|gb|EDR57967.1| exodeoxyribonuclease III [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|167049104|gb|EDR60512.1| exodeoxyribonuclease III [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167054450|gb|EDR64262.1| exodeoxyribonuclease III [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169750853|gb|ACA68371.1| exodeoxyribonuclease III [Yersinia pseudotuberculosis YPIII]
gi|186698492|gb|ACC89121.1| exodeoxyribonuclease III [Yersinia pseudotuberculosis PB1/+]
gi|229680989|gb|EEO77084.1| exonuclease III [Yersinia pestis Nepal516]
gi|229688799|gb|EEO80867.1| exonuclease III [Yersinia pestis biovar Orientalis str. India 195]
gi|229693925|gb|EEO83974.1| exonuclease III [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229702317|gb|EEO90336.1| exonuclease III [Yersinia pestis Pestoides A]
gi|262362092|gb|ACY58813.1| exodeoxyribonuclease III [Yersinia pestis D106004]
gi|262365769|gb|ACY62326.1| exodeoxyribonuclease III [Yersinia pestis D182038]
gi|270339233|gb|EFA50010.1| exodeoxyribonuclease III [Yersinia pestis KIM D27]
gi|294354246|gb|ADE64587.1| exodeoxyribonuclease III [Yersinia pestis Z176003]
gi|320015154|gb|ADV98725.1| exonuclease III [Yersinia pestis biovar Medievalis str. Harbin 35]
Length = 268
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 13/137 (9%), Positives = 33/137 (24%), Gaps = 25/137 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+++ ++++ +I GD N + + Q
Sbjct: 132 LQRYLEEQLSPEAQVLIMGDLNISPTDLDIGIGEDNRKRWLRTGKCSFLPEEREWLERLQ 191
Query: 45 KMDPDGLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ R++ + + D + ++
Sbjct: 192 NWGLVDTFRAANPDCNDHFSWFDYRSRGFDENRGLRIDLLLASQPLAARCIATGIDYAIR 251
Query: 104 RRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 252 GMEKPSDHAPVWSEFSL 268
>gi|256824866|ref|YP_003148826.1| exodeoxyribonuclease III [Kytococcus sedentarius DSM 20547]
gi|256688259|gb|ACV06061.1| exodeoxyribonuclease III [Kytococcus sedentarius DSM 20547]
Length = 307
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 35/135 (25%), Gaps = 20/135 (14%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+ L + G FV+ GDFN + K
Sbjct: 173 AKQLDRSRKAAAAAGREFVVMGDFNVAHTERDVKNWRGNKNSEGFLPSEREWFGSILSPR 232
Query: 50 ---GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
++ + + ++ D + S+ S +R
Sbjct: 233 TLVDVVRSQYPDTDGPYAWWSWMGQAFERDTGWRIDYHLATPTLARSVESAGVDKEPSRA 292
Query: 106 SKLSTHCPLTIEYDF 120
+LS H P+ ++Y
Sbjct: 293 ERLSDHAPVVVDYRL 307
>gi|310767787|gb|ADP12737.1| hypothetical protein EJP617_30560 [Erwinia sp. Ejp617]
Length = 303
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
L+ + +Q+ K +I GD N + + +
Sbjct: 165 RDLQSYLEQQQKADNQLLIMGDMNISSSDLDIGIGEESRKRWLRTGKCSFLPEEREWMST 224
Query: 45 KMDPDGLLIRFPQE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M+ Q + R+K D + D + V+
Sbjct: 225 LMNWGLYDTWRTQNATVNDRFSWFDYRSKGFDDNRGLRIDLILASRPLADRCVATGIDYD 284
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ E+
Sbjct: 285 IRAMEKPSDHAPIWAEFS 302
>gi|289705726|ref|ZP_06502110.1| exodeoxyribonuclease III [Micrococcus luteus SK58]
gi|289557566|gb|EFD50873.1| exodeoxyribonuclease III [Micrococcus luteus SK58]
Length = 275
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 12/134 (8%), Positives = 32/134 (23%), Gaps = 22/134 (16%)
Query: 7 EWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDD--------------------FWQ 44
L++ A ++ +AGD+N D ++
Sbjct: 141 RVLQEHAAARLAEDPDTRLALAGDWNIAPQDEDVWDIELFQREGYTHVSPAERAAFHAFE 200
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
++ + + D + + ++ + +
Sbjct: 201 DAGLVDVVRPRHPGPGVYTYWDYTGLAFPKKKGMRIDFQLCSPALAQTVTDAWIDREERK 260
Query: 105 RSKLSTHCPLTIEY 118
S H P+ +E
Sbjct: 261 GKGASDHAPVVVEL 274
>gi|224539496|ref|ZP_03680035.1| hypothetical protein BACCELL_04401 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518891|gb|EEF87996.1| hypothetical protein BACCELL_04401 [Bacteroides cellulosilyticus
DSM 14838]
Length = 254
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/141 (10%), Positives = 36/141 (25%), Gaps = 28/141 (19%)
Query: 3 SQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q E +++ + K+ ++ GD+N I D +
Sbjct: 117 ERQAFKMVWLEKFQEYVTELRKSRPKLILCGDYNICHEPIDIHDPIRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
E++ R S ++ + +
Sbjct: 177 WMTRFLNAGFIDTFRLLHPEQQEYTWWSYRFNSRAKNKGW--RIDYCMVTEPVRPLLKEA 234
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
+ S HCP+ ++ +
Sbjct: 235 --RILNDAVHSDHCPMLLDIE 253
>gi|253568552|ref|ZP_04845963.1| exodeoxyribonuclease [Bacteroides sp. 1_1_6]
gi|251842625|gb|EES70705.1| exodeoxyribonuclease [Bacteroides sp. 1_1_6]
Length = 254
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 35/141 (24%), Gaps = 28/141 (19%)
Query: 3 SQQG---EWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q WL+ + + KT ++ GD+N I D +
Sbjct: 118 ERQAFKMVWLEDFQKYVTELRKTRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEERE 177
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
EK+ R S D + S
Sbjct: 178 WMTRFLSAGFIDSFRLLYPEKQEYTWWSYRFNSRAKNKGWRIDYCMTSEPVRPMLKSASI 237
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
+ S HCP+ +E +
Sbjct: 238 LNDAV----HSDHCPMALEIE 254
>gi|283478229|emb|CAY74145.1| xthA [Erwinia pyrifoliae DSM 12163]
Length = 300
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
L+ + +Q+ K +I GD N + + +
Sbjct: 162 RDLQSYLEQQQKADNQLLIMGDMNISSSDLDIGIGEESRKRWLRTGKCSFLPEEREWMST 221
Query: 45 KMDPDGLLIRFPQE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M+ Q + R+K D + D + V+
Sbjct: 222 LMNWGLYDTWRTQNATVNDRFSWFDYRSKGFDDNRGLRIDLILASRPLADRCVATGIDYD 281
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ E+
Sbjct: 282 IRAMEKPSDHAPIWAEFS 299
>gi|239906954|ref|YP_002953695.1| exodeoxyribonuclease III [Desulfovibrio magneticus RS-1]
gi|239796820|dbj|BAH75809.1| exodeoxyribonuclease III [Desulfovibrio magneticus RS-1]
Length = 254
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 31/124 (25%), Gaps = 22/124 (17%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRF 55
++++ P V+ GDFN ++ + + F
Sbjct: 133 AEELRKHKPIVVCGDFNTAHTALDLKNAKANEKTSGFLPEERAWLDRFVAAGYVDTFRLF 192
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
E R K+ D + + S HCP+
Sbjct: 193 TTEGGHYSWWDYRFKARDRNVGWRIDYFFVSEELRPKVKRAWID----AAVMGSDHCPVG 248
Query: 116 IEYD 119
+E D
Sbjct: 249 LELD 252
>gi|72160662|ref|YP_288319.1| exodeoxyribonuclease III [Thermobifida fusca YX]
gi|71914394|gb|AAZ54296.1| Exodeoxyribonuclease III [Thermobifida fusca YX]
Length = 264
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 13/138 (9%), Positives = 31/138 (22%), Gaps = 20/138 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKM 46
L++ E + W + + GD+N D D + +
Sbjct: 129 LARLREAGEAWLSE--DPKAQIALCGDWNIAPYDEDVWDMAEFEGRTHVTKPERDAFHAV 186
Query: 47 DPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
G + + + D + +
Sbjct: 187 VDAGFTDVVRPHAPGPGVYTYWDYKGLAFPKRKGMRIDFILASPALAERATDAKIDREER 246
Query: 104 RRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ +
Sbjct: 247 KGKGASDHAPVIADFQLD 264
>gi|37680518|ref|NP_935127.1| exonuclease III [Vibrio vulnificus YJ016]
gi|37199266|dbj|BAC95098.1| exodeoxyribonuclease III [Vibrio vulnificus YJ016]
Length = 268
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 35/143 (24%), Gaps = 26/143 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q + L + G V+ GD N
Sbjct: 126 KRQFYQDLMGYLTTHRDNGEQVVVMGDINISPIDADIGIGEVNRKRWLKTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ Q + GL F + S R+K D + D +
Sbjct: 186 EWLQTLLDWGLEDTFRKLHPSVDDKFSWFDYRSKGFDDNRGLRIDVILATPSLATKCRES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEYD 119
D K S H P+ ++
Sbjct: 246 DIDYELRGIEKPSDHAPIWATFE 268
>gi|116251798|ref|YP_767636.1| exodeoxyribonuclease III [Rhizobium leguminosarum bv. viciae 3841]
gi|115256446|emb|CAK07530.1| putative exodeoxyribonuclease III [Rhizobium leguminosarum bv.
viciae 3841]
Length = 263
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E L+ +A +++ ++AGD+N D F + +
Sbjct: 129 MERLQTFAAERLAYEEMLILAGDYNVIPEPHDCFDPRVWENDALFLPQTREAFRRLENLG 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ ++ + L+ + S K
Sbjct: 189 LTDAVRATTDATQFYSFWDYQAGAWPKNNGIRIDHLLLSPEAADRMTSAAIEKHVRAWEK 248
Query: 108 LSTHCPLTIEYDF 120
S H P+ +DF
Sbjct: 249 PSDHVPVIAYFDF 261
>gi|68248592|ref|YP_247704.1| exonuclease III [Haemophilus influenzae 86-028NP]
gi|68056791|gb|AAX87044.1| exodeoxyribonuclease III [Haemophilus influenzae 86-028NP]
Length = 267
Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKEST---- 62
L+++ +++ P +I GD N + + D+ ++ G P+E+
Sbjct: 132 LQQYLEKEHDRSNPILIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLPEERAWYQRLY 191
Query: 63 -------------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ + V +
Sbjct: 192 DYGLEDSFRKLNPTANDKFSWFDYRSKGFDDNRGLRIDHILISQKLAERCVDVGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEF 266
>gi|21229250|ref|NP_635172.1| exodeoxyribonuclease III [Methanosarcina mazei Go1]
gi|20907825|gb|AAM32844.1| Exodeoxyribonuclease III [Methanosarcina mazei Go1]
Length = 258
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 30/132 (22%), Gaps = 22/132 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ +A+ G VI GD N I +M
Sbjct: 131 DAFLDYANALKSEGKKLVICGDVNTAHKEIDLARPKQNEMISGFLPEERAWMDKFLAAGY 190
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F E + R + + + S
Sbjct: 191 LDSFRMFNPEGGNYSWWSMRTGARSRNVGW--RLDYVFVSENLRENVKSASIYP--EIMG 246
Query: 109 STHCPLTIEYDF 120
S HCP+ +E +F
Sbjct: 247 SDHCPVGLELEF 258
>gi|103486507|ref|YP_616068.1| endonuclease/exonuclease/phosphatase [Sphingopyxis alaskensis
RB2256]
gi|98976584|gb|ABF52735.1| Endonuclease/exonuclease/phosphatase [Sphingopyxis alaskensis
RB2256]
Length = 289
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 34/115 (29%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ L++W + G V+ GDFN ++S P L +
Sbjct: 169 ESARQLRRWIGANRRRGETVVLMGDFNSPVDSPPHDAITDPAPGPAALHDTLAISRTPHF 228
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + +++ +++ + T S H P+ +
Sbjct: 229 GPLGTFTGFDIERNDPSPIDHIFVNDGTAVLRHATLTQQTGGKLPSDHYPVLADL 283
>gi|254420197|ref|ZP_05033921.1| exodeoxyribonuclease III [Brevundimonas sp. BAL3]
gi|196186374|gb|EDX81350.1| exodeoxyribonuclease III [Brevundimonas sp. BAL3]
Length = 265
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 31/135 (22%), Gaps = 18/135 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDG 50
E L + A + P + GD+N + + F +
Sbjct: 128 ERLNRHARDLLAFEEPLALCGDYNVIPEAEDAKNPAAWTDDALFQPQSRQAFRALKNLGL 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--SDLDTRRSKL 108
+ + ++ L+ + K
Sbjct: 188 ADSHEVGGEPAGTYSFWDYQAGAWQRNHGIRIDFALLSPQAADRLRGVETHRDARDMDKP 247
Query: 109 STHCPLTIEYDFEKG 123
S H P+ ++ D G
Sbjct: 248 SDHVPVVVDIDLSAG 262
>gi|29346040|ref|NP_809543.1| exodeoxyribonuclease [Bacteroides thetaiotaomicron VPI-5482]
gi|29337934|gb|AAO75737.1| exodeoxyribonuclease [Bacteroides thetaiotaomicron VPI-5482]
Length = 253
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 35/141 (24%), Gaps = 28/141 (19%)
Query: 3 SQQG---EWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q WL+ + + KT ++ GD+N I D +
Sbjct: 117 ERQAFKMVWLEDFQKYVTELRKTRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
EK+ R S D + S
Sbjct: 177 WMTRFLSAGFIDSFRLLYPEKQEYTWWSYRFNSRAKNKGWRIDYCMTSEPVRPMLKSASI 236
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
+ S HCP+ +E +
Sbjct: 237 LNDAV----HSDHCPMALEIE 253
>gi|269218782|ref|ZP_06162636.1| exodeoxyribonuclease III [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269211893|gb|EEZ78233.1| exodeoxyribonuclease III [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 265
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 21/135 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------------FWQK 45
+ ++K + + G F++AGDFN + T+ F Q
Sbjct: 131 DLVEKRLAELSEGGGRFLVAGDFNIVHTPLDITNWKSNHNRTSGVLDEEIAYLDRWFGQM 190
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
D P + +R K+ + D + +Y +
Sbjct: 191 GLADVQRRLDPDSQGPYTWWSQRGKAFDNNTGWRIDYHLASPSLAEKADAYRIDRAPSYD 250
Query: 106 SKLSTHCPLTIEYDF 120
++ S H PL ++Y
Sbjct: 251 ARFSDHAPLIVDYTL 265
>gi|329922986|ref|ZP_08278502.1| endonuclease/exonuclease/phosphatase family protein [Paenibacillus
sp. HGF5]
gi|328941759|gb|EGG38044.1| endonuclease/exonuclease/phosphatase family protein [Paenibacillus
sp. HGF5]
Length = 494
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 34/122 (27%), Gaps = 4/122 (3%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + IP VI GDFN S + + + + +
Sbjct: 179 QKSAALIVDKMKS-FDPEIPVVITGDFNTLPASDTYSIFTNNGLSDAHVTAKKRTNDDLG 237
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
++ L ++++ + + S H P+ +E ++
Sbjct: 238 TFHNYKDP---TGGGSGNRIDWILHGQGWNVLHSEIINYKEDDQYPSDHYPVMMEGTLQQ 294
Query: 123 GN 124
N
Sbjct: 295 SN 296
>gi|291561139|emb|CBL39938.1| exodeoxyribonuclease III [butyrate-producing bacterium SS3/4]
Length = 284
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 32/132 (24%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + ++T P + GD N I + + +
Sbjct: 158 DAFRAYLKE-LETKKPVIFCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKFTELLEAGF 216
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++E R + F + S
Sbjct: 217 VDTFRYFYPDQEGIYSWWSYRFSARAKNAGW--RIDYFCVSESLK--DRLVDAKIHTEVM 272
Query: 108 LSTHCPLTIEYD 119
S HCP+ ++
Sbjct: 273 GSDHCPVELDIQ 284
>gi|145629100|ref|ZP_01784899.1| exodeoxyribonuclease III [Haemophilus influenzae 22.1-21]
gi|145639670|ref|ZP_01795273.1| exodeoxyribonuclease III [Haemophilus influenzae PittII]
gi|144978603|gb|EDJ88326.1| exodeoxyribonuclease III [Haemophilus influenzae 22.1-21]
gi|145271227|gb|EDK11141.1| exodeoxyribonuclease III [Haemophilus influenzae PittII]
gi|309750640|gb|ADO80624.1| Exodeoxyribonuclease III [Haemophilus influenzae R2866]
Length = 267
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKEST---- 62
L+++ +++ P +I GD N + + D+ ++ G P+E+
Sbjct: 132 LQQYLEKEHDKSNPILIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLPEERAWYQRLY 191
Query: 63 -------------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ + V +
Sbjct: 192 DYGLEDSFRKLNPTANDKFSWFDYRSKGFDDNRGLRIDHILVSQKLAERCVDVGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEF 266
>gi|319791365|ref|YP_004153005.1| exodeoxyribonuclease iii xth [Variovorax paradoxus EPS]
gi|315593828|gb|ADU34894.1| exodeoxyribonuclease III Xth [Variovorax paradoxus EPS]
Length = 263
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 37/131 (28%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
E + A + +G+P V+AGD+N + + ++ G
Sbjct: 129 EAFNRHAKKLFSSGMPVVLAGDYNVVPTDADIYNPASWRDDALLQPESRAAFAQLLKQGW 188
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + D+ + + + S R+
Sbjct: 189 TDAIRATHPDRVPFTFWTYWRNRYPRDAGLRIDHLLLNAELAPMLRSAGVDRDVRGRTGA 248
Query: 109 STHCPLTIEYD 119
S H P IE D
Sbjct: 249 SDHAPAWIELD 259
>gi|148825679|ref|YP_001290432.1| exonuclease III [Haemophilus influenzae PittEE]
gi|148715839|gb|ABQ98049.1| exodeoxyribonuclease III [Haemophilus influenzae PittEE]
Length = 267
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKEST---- 62
L+++ +++ P +I GD N + + D+ ++ G P+E+
Sbjct: 132 LQQYLEKEHDKSNPILIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLPEERAWYQRLY 191
Query: 63 -------------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ + V +
Sbjct: 192 DYGLEDSFRKLNPTANDKFSWFDYRSKGFDDNRGLRIDHILVSQKLAERCVDVGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEF 266
>gi|86138524|ref|ZP_01057097.1| endonuclease/exonuclease/phosphatase family protein [Roseobacter
sp. MED193]
gi|85824584|gb|EAQ44786.1| endonuclease/exonuclease/phosphatase family protein [Roseobacter
sp. MED193]
Length = 331
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 22/138 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-----------------DDFWQKMD 47
Q WL + + ++ G ++ GD N D Q +
Sbjct: 193 QAIWLHRRIKEHVEAGENVIVMGDLNDGPGLDEYERLFGKSSVEIVMGAELTDPHAQSLL 252
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSYDQSDLD 102
+ + + ++ LDY +I + YD L
Sbjct: 253 KPREPVLPSTSRFYNPETKRYFRALLDYIMISHGLEAYGPHWRIWHPFEDAECYDDIPLR 312
Query: 103 TRRSKLSTHCPLTIEYDF 120
S H P++++ +
Sbjct: 313 EALLAASDHFPVSLDLEL 330
>gi|320155825|ref|YP_004188204.1| exodeoxyribonuclease III [Vibrio vulnificus MO6-24/O]
gi|319931137|gb|ADV86001.1| exodeoxyribonuclease III [Vibrio vulnificus MO6-24/O]
Length = 268
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 35/143 (24%), Gaps = 26/143 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q + L + G V+ GD N
Sbjct: 126 KRQFYKDLMGYLTTHRDNGEQVVVMGDINISPIDADIGIGEVNRKRWLKTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ Q + GL F + S R+K D + D +
Sbjct: 186 EWLQTLLDWGLEDTFRKLHPSVDDKFSWFDYRSKGFDDNRGLRIDVILATPSLAAKCRES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEYD 119
D K S H P+ ++
Sbjct: 246 DIDYELRGIEKPSDHAPIWATFE 268
>gi|167647089|ref|YP_001684752.1| exodeoxyribonuclease III Xth [Caulobacter sp. K31]
gi|167349519|gb|ABZ72254.1| exodeoxyribonuclease III Xth [Caulobacter sp. K31]
Length = 262
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 30/133 (22%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
L A + P VIAGD+N + F +
Sbjct: 130 MRRLHAHAQGLLALEEPLVIAGDYNVIPEVEDVANPEAWVNDALFRLESRGAFRALKNLG 189
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--QSDLDTRRSK 107
+ ++ + + L+ + + + K
Sbjct: 190 LTDAYMQADGAPGGYTFWDYQAGAWPRNLGIRIDHLLLSPQAADKLAGVVIHRDERDKEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ E
Sbjct: 250 PSDHVPVVAELAL 262
>gi|241204407|ref|YP_002975503.1| exodeoxyribonuclease III Xth [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240858297|gb|ACS55964.1| exodeoxyribonuclease III Xth [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 263
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
E L+ +A +++ V+AGD+N D + +
Sbjct: 129 MERLRTFAAERLAYEEMLVLAGDYNVIPEPHDCFDPKVWENDALFLPQTREAFRRLENLG 188
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
L + + + I D+ + + + S K
Sbjct: 189 LTDALRATTDATQLYSFWDYQAGAWPKNNGIRIDHLLLSPEAADRMTSAAIEKHVRAWEK 248
Query: 108 LSTHCPLTIEYDF 120
S H P+ +DF
Sbjct: 249 PSDHVPVIAYFDF 261
>gi|126662905|ref|ZP_01733904.1| exodeoxyribonuclease III [Flavobacteria bacterium BAL38]
gi|126626284|gb|EAZ96973.1| exodeoxyribonuclease III [Flavobacteria bacterium BAL38]
Length = 253
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 31/125 (24%), Gaps = 22/125 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLI 53
+ D+ K VI GD+N +I D
Sbjct: 132 YVDELKKEIPNLVICGDYNICHEAIDIHDPIRNAKVSGFLPEERAWLDGFLKNGFVDTFR 191
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+E + R + + L S L +K S HCP
Sbjct: 192 HLNKEPNNYSWWSYRANARNNNKGW--RIDYCLATESLKEKIQRALILP--EAKHSDHCP 247
Query: 114 LTIEY 118
+ +E
Sbjct: 248 VLVEI 252
>gi|145633402|ref|ZP_01789132.1| exodeoxyribonuclease III [Haemophilus influenzae 3655]
gi|145635225|ref|ZP_01790929.1| exodeoxyribonuclease III [Haemophilus influenzae PittAA]
gi|229845387|ref|ZP_04465518.1| exonuclease III [Haemophilus influenzae 6P18H1]
gi|229846960|ref|ZP_04467066.1| exonuclease III [Haemophilus influenzae 7P49H1]
gi|144985965|gb|EDJ92567.1| exodeoxyribonuclease III [Haemophilus influenzae 3655]
gi|145267504|gb|EDK07504.1| exodeoxyribonuclease III [Haemophilus influenzae PittAA]
gi|229810044|gb|EEP45764.1| exonuclease III [Haemophilus influenzae 7P49H1]
gi|229811695|gb|EEP47393.1| exonuclease III [Haemophilus influenzae 6P18H1]
gi|309972825|gb|ADO96026.1| Exodeoxyribonuclease III [Haemophilus influenzae R2846]
Length = 267
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKEST---- 62
L+++ +++ P +I GD N + + D+ ++ G P+E+
Sbjct: 132 LQQYLEKEHDKSNPILIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLPEERAWYQRLY 191
Query: 63 -------------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ + V +
Sbjct: 192 DYGLEDSFRKLNPTANDKFSWFDYRSKGFDDNRGLRIDHILVSQKLAERCVDVGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEF 266
>gi|320158664|ref|YP_004191042.1| metal-dependent hydrolase [Vibrio vulnificus MO6-24/O]
gi|319933976|gb|ADV88839.1| metal-dependent hydrolase [Vibrio vulnificus MO6-24/O]
Length = 297
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 6/123 (4%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L + + L +W Q+ +++ GDFN + D ++ G + ++ ++
Sbjct: 178 LRLESQALGQWISQRQNNKQNYLVLGDFNHNLAYR--NDWLMNELTSAGKIHLLTEDTKA 235
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---SKLSTHCPLTIEY 118
C V + + + + + ++ S +Q + +LS HCP++
Sbjct: 236 NCKVRSKKQPNKVHSFRSL-IDHIIVSEGLSASQAEQKLFTSNDVLKYQLSDHCPVSTTV 294
Query: 119 DFE 121
Sbjct: 295 TLP 297
>gi|116873216|ref|YP_849997.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742094|emb|CAK21218.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 251
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + ++ + P V+ GD N I + + +
Sbjct: 124 DAILEYIK-NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + ++ R + D +V
Sbjct: 183 IDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSKRLKDKLVDAKIHSEVLG--- 239
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E +
Sbjct: 240 -SDHCPVELELNL 251
>gi|16272016|ref|NP_438214.1| exonuclease III [Haemophilus influenzae Rd KW20]
gi|145636755|ref|ZP_01792421.1| exodeoxyribonuclease III [Haemophilus influenzae PittHH]
gi|260580655|ref|ZP_05848482.1| exodeoxyribonuclease III [Haemophilus influenzae RdAW]
gi|1169570|sp|P44318|EX3_HAEIN RecName: Full=Exodeoxyribonuclease III; Short=EXO III;
Short=Exonuclease III
gi|1572987|gb|AAC21719.1| exodeoxyribonuclease III (xthA) [Haemophilus influenzae Rd KW20]
gi|145270053|gb|EDK09990.1| exodeoxyribonuclease III [Haemophilus influenzae PittHH]
gi|260092717|gb|EEW76653.1| exodeoxyribonuclease III [Haemophilus influenzae RdAW]
Length = 267
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKEST---- 62
L+++ +++ P +I GD N + + D+ ++ G P+E+
Sbjct: 132 LQQYLEKEHDKSNPILIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLPEERAWYQRLY 191
Query: 63 -------------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ + V +
Sbjct: 192 DYGLEDSFRKLNPTANDKFSWFDYRSKGFDDNRGLRIDHILVSQKLAERCVDVGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEF 266
>gi|301168642|emb|CBW28232.1| exonuclease III [Haemophilus influenzae 10810]
Length = 267
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKEST---- 62
L+++ +++ P +I GD N + + D+ ++ G P+E+
Sbjct: 132 LQQYLEKEHDKSNPILIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLPEERAWYQRLY 191
Query: 63 -------------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ + V +
Sbjct: 192 DYGLEDSFRKLNPTANDKFSWFDYRSKGFDDNRGLRIDHILVSQKLAERCVDVGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEF 266
>gi|145641817|ref|ZP_01797392.1| exodeoxyribonuclease III [Haemophilus influenzae R3021]
gi|145273439|gb|EDK13310.1| exodeoxyribonuclease III [Haemophilus influenzae 22.4-21]
Length = 267
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKEST---- 62
L+++ +++ P +I GD N + + D+ ++ G P+E+
Sbjct: 132 LQQYLEKEHDKSNPILIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLPEERAWYQRLY 191
Query: 63 -------------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ + V +
Sbjct: 192 DYGLEDSFRKLNPTANDKFSWFDYRSKGFDDNRGLRIDHILVSQKLAERCVDVGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEF 266
>gi|190891504|ref|YP_001978046.1| exodeoxyribonuclease III protein [Rhizobium etli CIAT 652]
gi|190696783|gb|ACE90868.1| exodeoxyribonuclease III protein [Rhizobium etli CIAT 652]
Length = 263
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
E L+ +A +++ V+AGD+N D + +
Sbjct: 129 MERLRSFAAERLAYEEMLVLAGDYNVIPEPHDCFDPKVWENDALFLPQTREAFRRLENLG 188
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + I D+ + + + S K
Sbjct: 189 LTDAVRATTDATRLYSFWDYQAGAWPKNNGIRIDHLLLSPEAADRMTSAAIEKHVRAWEK 248
Query: 108 LSTHCPLTIEYDF 120
S H P+ +DF
Sbjct: 249 PSDHVPVIAYFDF 261
>gi|227821924|ref|YP_002825894.1| exodeoxyribonuclease III protein [Sinorhizobium fredii NGR234]
gi|227340923|gb|ACP25141.1| exodeoxyribonuclease III protein [Sinorhizobium fredii NGR234]
Length = 319
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 40/133 (30%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDG 50
+ L +A +++ P ++AGD+N + D ++++ G
Sbjct: 187 MQRLASFAKERLLLEEPLILAGDYNVIPEAHDCWDVNVWRNDALFLPETRAAFRQLRNLG 246
Query: 51 LLIRFPQEKESTC-NVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
L + ++ + ++ +VS K
Sbjct: 247 LTDAVRATTDEVPLYSFWDYQAGCWQKNFGIRIDHLMLSPEAVDKLVSTSIEKHVRAWEK 306
Query: 108 LSTHCPLTIEYDF 120
S H P+ ++ F
Sbjct: 307 PSDHVPVAAQFAF 319
>gi|27365439|ref|NP_760967.1| exonuclease III [Vibrio vulnificus CMCP6]
gi|27361587|gb|AAO10494.1| exodeoxyribonuclease III [Vibrio vulnificus CMCP6]
Length = 268
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 35/143 (24%), Gaps = 26/143 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q + L + G V+ GD N
Sbjct: 126 KRQFYKDLMGYLTTHRDNGEQVVVMGDINISPIDADIGIGEVNRKRWLKTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ Q + GL F + S R+K D + D +
Sbjct: 186 EWLQTLLDWGLEDTFRKLHPSVDDKFSWFDYRSKGFDDNRGLRIDVILATPSLAAQCRES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEYD 119
D K S H P+ ++
Sbjct: 246 DIDYELRGIEKPSDHAPIWATFE 268
>gi|296113240|ref|YP_003627178.1| exodeoxyribonuclease III [Moraxella catarrhalis RH4]
gi|295920934|gb|ADG61285.1| exodeoxyribonuclease III [Moraxella catarrhalis RH4]
gi|326560231|gb|EGE10619.1| exonuclease III [Moraxella catarrhalis 7169]
gi|326562876|gb|EGE13163.1| exonuclease III [Moraxella catarrhalis 46P47B1]
gi|326563683|gb|EGE13935.1| exonuclease III [Moraxella catarrhalis 103P14B1]
gi|326565237|gb|EGE15422.1| exonuclease III [Moraxella catarrhalis 12P80B1]
gi|326566451|gb|EGE16601.1| exonuclease III [Moraxella catarrhalis BC1]
gi|326570258|gb|EGE20303.1| exonuclease III [Moraxella catarrhalis BC8]
gi|326570995|gb|EGE21019.1| exonuclease III [Moraxella catarrhalis BC7]
gi|326573291|gb|EGE23259.1| exonuclease III [Moraxella catarrhalis 101P30B1]
gi|326575810|gb|EGE25733.1| exonuclease III [Moraxella catarrhalis CO72]
gi|326576891|gb|EGE26797.1| exonuclease III [Moraxella catarrhalis O35E]
Length = 271
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 33/139 (23%), Gaps = 27/139 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L ++ D+ G +I GD N I
Sbjct: 133 LNRYIDELQADGRELIIMGDMNISPEDIDVGIGAANAKRWLAKGTCSFLPEERAWYQMLM 192
Query: 45 KMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDL 101
F + R++ D + L ++ V+ S
Sbjct: 193 STGLTDTYRLFYPKSHDEFSWFDYRSRGFEDTPKRGLRIDHILCTDTLKNDCVAAGISYD 252
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ +++
Sbjct: 253 IRAMDKPSDHAPIWAKFNL 271
>gi|325286008|ref|YP_004261798.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
gi|324321462|gb|ADY28927.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
Length = 254
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 36/131 (27%), Gaps = 22/131 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+ +K+ ++ K ++ GD+N +I D K
Sbjct: 126 MDDFQKYINELKKDKPNIIVVGDYNICHEAIDIHDPVRNKNVSGFLPVEREWIGNFMESG 185
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +E + R + + D + + +K
Sbjct: 186 FIDSFRHFNKEPHNYSWWSYRANARNNNKGWRLDYGMVSKTLENRLKRAVI----LKEAK 241
Query: 108 LSTHCPLTIEY 118
S HCP+ +E
Sbjct: 242 HSDHCPILVEL 252
>gi|333030586|ref|ZP_08458647.1| exodeoxyribonuclease III Xth [Bacteroides coprosuis DSM 18011]
gi|332741183|gb|EGJ71665.1| exodeoxyribonuclease III Xth [Bacteroides coprosuis DSM 18011]
Length = 253
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 31/129 (24%), Gaps = 25/129 (19%)
Query: 6 GEWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------- 49
+WL + + KT ++ GD+N I D +
Sbjct: 123 MQWLSDFQNYVLELRKTRPNLILCGDYNICHEEIDIHDPKGNAKNSGFLPEERAWMTSFL 182
Query: 50 -----GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
RF E + R K+ ++ +
Sbjct: 183 DTGFSDSFRRFHAETQKYTWWSYRFKARSKNKGW--RIDYCMVSDEAK--DRVVDAWIDN 238
Query: 105 RSKLSTHCP 113
+ S HCP
Sbjct: 239 DAVHSDHCP 247
>gi|227519480|ref|ZP_03949529.1| exodeoxyribonuclease [Enterococcus faecalis TX0104]
gi|227073092|gb|EEI11055.1| exodeoxyribonuclease [Enterococcus faecalis TX0104]
gi|315151770|gb|EFT95786.1| exodeoxyribonuclease III [Enterococcus faecalis TX0012]
Length = 251
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 30/144 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + + + ++ + P ++ GD N +I + + +
Sbjct: 113 LKRLAYRMTWEDAFSAYLNE-LNQEKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEER 171
Query: 50 ------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
F E + R + + D + +VS
Sbjct: 172 QKFTELLDSGFTDTFRYFYPEAEGIYSWWSYRFNARKNNAGWRIDYFVVSESLNERLVSA 231
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ + DF
Sbjct: 232 KIHTDILG----SDHCPVEVVLDF 251
>gi|149278560|ref|ZP_01884696.1| exodeoxyribonuclease III (exonuclease III) [Pedobacter sp. BAL39]
gi|149230555|gb|EDM35938.1| exodeoxyribonuclease III (exonuclease III) [Pedobacter sp. BAL39]
Length = 260
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 30/132 (22%), Gaps = 18/132 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------FWQKMDPDGLLIR------ 54
L + TG+P ++ GD+N + +++
Sbjct: 127 RLADHGRTLLNTGLPVMLVGDYNVMPTELDTYKPEKYLDNALFREESRKAYADLVAQGWI 186
Query: 55 -----FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + + D+ + + K S
Sbjct: 187 DAIRELYPGERIYTFWDYMRNAYGRNAGLRLDHFLLNPVLAGRLKVAKVDKEVRGWEKAS 246
Query: 110 THCPLTIEYDFE 121
H P+ IE
Sbjct: 247 DHAPVWIELSMP 258
>gi|148827197|ref|YP_001291950.1| exonuclease III [Haemophilus influenzae PittGG]
gi|148718439|gb|ABQ99566.1| exodeoxyribonuclease III [Haemophilus influenzae PittGG]
Length = 267
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKEST---- 62
L+++ +++ P +I GD N + + D+ ++ G P+E+
Sbjct: 132 LQQYLEKEHDKSNPILIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLPEERAWYQRLY 191
Query: 63 -------------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ + V +
Sbjct: 192 DYGLEDSFRNLNPTANDKFSWFDYRSKGFDDNRGLRIDHILVSQKLAERCVDVGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEF 266
>gi|225012120|ref|ZP_03702557.1| exodeoxyribonuclease III Xth [Flavobacteria bacterium MS024-2A]
gi|225003675|gb|EEG41648.1| exodeoxyribonuclease III Xth [Flavobacteria bacterium MS024-2A]
Length = 257
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 34/129 (26%), Gaps = 22/129 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+++ D K +I GD+N ++I D K
Sbjct: 133 QEYIDLLKKEFPNLIICGDYNICHHAIDIHDPVRNKNVSGFLPEERKWLDGFITSGFIDS 192
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E R + + L+ S +K S H
Sbjct: 193 FRYLNPEPHHYSWWSYRANARNNNKGW--RIDYALVSESLKDNI--NRAYILPEAKHSDH 248
Query: 112 CPLTIEYDF 120
CP+ +E +F
Sbjct: 249 CPVGVELNF 257
>gi|134103032|ref|YP_001108693.1| AP endonuclease [Saccharopolyspora erythraea NRRL 2338]
gi|291005211|ref|ZP_06563184.1| AP endonuclease [Saccharopolyspora erythraea NRRL 2338]
gi|133915655|emb|CAM05768.1| AP endonuclease, family 1:exodeoxyribonuclease III xth
[Saccharopolyspora erythraea NRRL 2338]
Length = 265
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 20/132 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------- 48
L + G ++ GD+N I + +
Sbjct: 134 LTDLRARAEAAGKQALVCGDWNIAHREIDLKNWKGNQKSAGFLPEERAWLTQVFDEVGYV 193
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
D + P+ R K+ + D + + +
Sbjct: 194 DVVRRLHPEGPGPYSWWSYRGKAFDNDSGWRIDYLAATPALAERCTDAFVERAPSYDKRW 253
Query: 109 STHCPLTIEYDF 120
S H P+T +DF
Sbjct: 254 SDHAPVTAVFDF 265
>gi|300716986|ref|YP_003741789.1| exodeoxyribonuclease III [Erwinia billingiae Eb661]
gi|299062822|emb|CAX59942.1| Exodeoxyribonuclease III [Erwinia billingiae Eb661]
Length = 272
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 38/142 (26%), Gaps = 25/142 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
L+ + + K P VI GD N + + +
Sbjct: 130 RDLQSYLENDQKPTNPVVIMGDMNISATDLDIGIGEDNRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M + + E+ R+K D + D + V+
Sbjct: 190 LMGWGLVDTWRAENAEANDRFSWFDYRSKGFDDNRGLRIDLVLASQPLAARCVATGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYDFEKG 123
K S H P+ +++ ++
Sbjct: 250 IRSMEKPSDHAPIWAQFNLDEA 271
>gi|312883334|ref|ZP_07743060.1| Endonuclease/Exonuclease/phosphatase family protein [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309368950|gb|EFP96476.1| Endonuclease/Exonuclease/phosphatase family protein [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 303
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L +Q + W ++ K +++ GDFN +I + + + Q
Sbjct: 176 ILKEQLININSWIREREKYQHDYIVLGDFNSQIADEAKWAWYL--ISKKTQAVLTSQNTT 233
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK---LSTHCPLTIE 117
+ C V + K + + + ++ +S + + Q T+ + LS HCP+ IE
Sbjct: 234 AQCYVRSKTKRASVFK-YKSIIDHIIVSSSHTFTTAKQLPFKTKDVRQYELSDHCPVIIE 292
Query: 118 YDFEKGN 124
+ N
Sbjct: 293 ASYTSMN 299
>gi|262274649|ref|ZP_06052460.1| exodeoxyribonuclease III [Grimontia hollisae CIP 101886]
gi|262221212|gb|EEY72526.1| exodeoxyribonuclease III [Grimontia hollisae CIP 101886]
Length = 300
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 31/137 (22%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TDDFWQK 45
+ L + + ++ GD N + +
Sbjct: 163 QDLMTYLNASHTNDEKLIVMGDINISPLDLDIGIGEVNRKRWLKTGKCSFQPEEREMLAT 222
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G + F Q+ R++ D + D + +
Sbjct: 223 LMNWGFVDTFRQQYPDVDNKFSWFDYRSRGFDDNRGLRIDVILATPSLAVDCIDTGIDYE 282
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 283 LRGIEKPSDHAPIWATF 299
>gi|238919557|ref|YP_002933072.1| exodeoxyribonuclease III, [Edwardsiella ictaluri 93-146]
gi|238869126|gb|ACR68837.1| exodeoxyribonuclease III, putative [Edwardsiella ictaluri 93-146]
Length = 269
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 36/138 (26%), Gaps = 25/138 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKES----- 61
L+++ + P +I GD N I D+ ++ G P+E+E
Sbjct: 132 LQRYLQDSLTPQNPVLIMGDMNISPRDIDIGIGDESRRRWLRSGKCSFLPEEREWLDRLL 191
Query: 62 ------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D +
Sbjct: 192 AWGLVDTYRQANPQGDDHFSWFDYRSKGFDDNRGLRIDLLLASQPLAQRCTDTGIDYEIR 251
Query: 104 RRSKLSTHCPLTIEYDFE 121
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEFALS 269
>gi|163787138|ref|ZP_02181585.1| exodeoxyribonuclease [Flavobacteriales bacterium ALC-1]
gi|159877026|gb|EDP71083.1| exodeoxyribonuclease [Flavobacteriales bacterium ALC-1]
Length = 253
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 35/132 (26%), Gaps = 21/132 (15%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM-----------------DP 48
+ + ++ + K V+ GD+N +I + + +
Sbjct: 126 MDLIHEYLNNLQKEKSNLVVVGDYNICHEAIDIHNPKMKGVSGFLPEEREWLGNFIDSGF 185
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+++ R S + D +I
Sbjct: 186 IDSFRYLHPKRQEYSWWSYRANSRANNKGWRLDYAMASKPLQENIKRSVILTEAV----H 241
Query: 109 STHCPLTIEYDF 120
S HCP+ +E +F
Sbjct: 242 SDHCPILLELEF 253
>gi|329298723|ref|ZP_08256059.1| exonuclease III [Plautia stali symbiont]
Length = 268
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 35/139 (25%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
L+ + +Q++ P +I GD N + + +
Sbjct: 130 RDLQSYLEQQLAADKPVLIMGDMNISSTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + + E+ R+K D + D + +
Sbjct: 190 LLQWGLVDTWREKNPETADRFSWFDYRSKGFDDNRGLRIDLLLASPPLASRCIDSGIDYA 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ +
Sbjct: 250 IRSMDKPSDHAPVWSSFKL 268
>gi|315648386|ref|ZP_07901485.1| Endonuclease/exonuclease/phosphatase [Paenibacillus vortex V453]
gi|315276080|gb|EFU39426.1| Endonuclease/exonuclease/phosphatase [Paenibacillus vortex V453]
Length = 494
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 3/107 (2%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
IP V+ GDFN S + + + + + ++
Sbjct: 193 APDIPVVMTGDFNTVPGSDTYSIFTSNGLSDGHITAKKHTNDDLGTFHNYKDP---TGGG 249
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
L ++++ + + + S H P+ I +K N
Sbjct: 250 SGNRIDWILHSTGWNVLHSEIINYNEEGQYPSDHYPIMITGTLQKTN 296
>gi|145630665|ref|ZP_01786444.1| exodeoxyribonuclease III [Haemophilus influenzae R3021]
gi|260582045|ref|ZP_05849840.1| exodeoxyribonuclease III [Haemophilus influenzae NT127]
gi|144983791|gb|EDJ91241.1| exodeoxyribonuclease III [Haemophilus influenzae R3021]
gi|260094935|gb|EEW78828.1| exodeoxyribonuclease III [Haemophilus influenzae NT127]
Length = 267
Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 42/135 (31%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKEST---- 62
L+++ +++ P +I GD N + + D+ ++ G P+E+E
Sbjct: 132 LQQYLEKEHDKSNPILIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLPEEREWYQRLY 191
Query: 63 -------------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ + V +
Sbjct: 192 DYGLEDSFRKMNPTANDKFSWFDYRSKGFDDNRGLRIDHILVSQKLAERCVDVGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEF 266
>gi|254500814|ref|ZP_05112965.1| exodeoxyribonuclease III [Labrenzia alexandrii DFL-11]
gi|222436885|gb|EEE43564.1| exodeoxyribonuclease III [Labrenzia alexandrii DFL-11]
Length = 260
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 34/131 (25%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L A++++ +PF++ GD+N + + + F
Sbjct: 128 MDRLLVHAEKRLAEEVPFILLGDYNVIPDPVDAKNPENWTDDALFQPESRQKFRALTHLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ ++ + L+ ++ K
Sbjct: 188 MTEAIRACTEAPETFTFWDYQAGAWQKNNGIRIDHILMSPQANDKMLGCGIDKHVRGWEK 247
Query: 108 LSTHCPLTIEY 118
S H P+ +
Sbjct: 248 PSDHVPVWVTL 258
>gi|269138847|ref|YP_003295548.1| exonuclease III [Edwardsiella tarda EIB202]
gi|267984508|gb|ACY84337.1| exonuclease III [Edwardsiella tarda EIB202]
gi|304558837|gb|ADM41501.1| Exodeoxyribonuclease III [Edwardsiella tarda FL6-60]
Length = 269
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 31/138 (22%), Gaps = 25/138 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------------DDFW 43
L+++ + P +I GD N I D
Sbjct: 132 LQRYLQDALSPQNPVLIMGDMNITPRDIDIGIGEDSRRRWLRSGKCSFLPEEREWLDRLL 191
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
D PQ E R+K D + D +
Sbjct: 192 AWGLVDTYRQANPQGDERFSWFDYRSKGFDDNRGLRIDLLLASQPLAQRCTDTGIDYAIR 251
Query: 104 RRSKLSTHCPLTIEYDFE 121
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEFALS 269
>gi|123442505|ref|YP_001006482.1| exonuclease III [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|122089466|emb|CAL12314.1| exodeoxyribonuclease III [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 268
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 33/137 (24%), Gaps = 25/137 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+++ +Q++ +I GD N + + Q
Sbjct: 132 LQQYLEQQLSADAQVLIMGDLNISPTDLDIGIGEDSRKRWLRTGKCSFLPEERAWLERLQ 191
Query: 45 KMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ R++ + + D + ++
Sbjct: 192 NWGLVDTFRAANPDCNDQFSWFDYRSRGFDENRGLRIDLLLASRPLAARCIATGIDYDIR 251
Query: 104 RRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 252 SMEKPSDHAPVWSEFAL 268
>gi|308209125|gb|ADO20907.1| deoxyribonuclease-1 [Saccharopolyspora spinosa]
Length = 272
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 33/131 (25%), Gaps = 19/131 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDPD 49
L ++ G ++ GD+N I + + D
Sbjct: 142 LGDLRERAAAEGREVLVCGDWNIAHQQIDLKNWKSNQKEAGFLPEERAWLTEVFDSGYAD 201
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
L P+ R K+ + D + + + S
Sbjct: 202 VLRRLHPEGPGPYSWWSYRGKAFDNDSGWRIDYIVSSPGLASRCTDAYVEKAASYDQRWS 261
Query: 110 THCPLTIEYDF 120
H P+T +DF
Sbjct: 262 DHAPVTAAFDF 272
>gi|293189928|ref|ZP_06608608.1| exodeoxyribonuclease III [Actinomyces odontolyticus F0309]
gi|292821147|gb|EFF80094.1| exodeoxyribonuclease III [Actinomyces odontolyticus F0309]
Length = 275
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 42/138 (30%), Gaps = 20/138 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------- 42
L + G + + ++ GI ++ GDFN + +
Sbjct: 137 LPRIGARMAELIAEEAGGGISSLVCGDFNVVRSEADIKNWKPNHNKRAGVLDEEIAFLNR 196
Query: 43 -WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
++ D + + R ++ ++ D + S++
Sbjct: 197 WVEEGWRDTVRDLAGDVQGPYSWWSWRGQAFVNNAGWRIDYQYATPALGERARSFEIGRA 256
Query: 102 DTRRSKLSTHCPLTIEYD 119
D + S H P+++ Y+
Sbjct: 257 DEYAERFSDHAPVSVTYE 274
>gi|326335986|ref|ZP_08202163.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325691950|gb|EGD33912.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 253
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/127 (18%), Positives = 35/127 (27%), Gaps = 22/127 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-----------QKMDPD-------GL 51
+K+ + K VI GD+N +I D +K D
Sbjct: 130 QKYINTLKKVHPNLVICGDYNICHEAIDIHDPIRNANVSGFLPVERKWLDDFLKSGFIDS 189
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F +E + R + + D IV K S H
Sbjct: 190 FRFFNKEPHNYSWWSYRANARANNKGWRIDYCLVAQPLESRIVRAAILPEA----KHSDH 245
Query: 112 CPLTIEY 118
CP+ +E
Sbjct: 246 CPILVEI 252
>gi|238897851|ref|YP_002923530.1| exonuclease III [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229465608|gb|ACQ67382.1| exonuclease III [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 268
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 33/139 (23%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
E L ++ Q +I GDFN +
Sbjct: 130 EDLHRYLTQHFSVQSHVLIMGDFNICPTDGDIGIGEQNRKRWLSSGKCAFLPEERAWFEH 189
Query: 43 WQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q L + + R+K + + D + + ++
Sbjct: 190 LQSWGLIDLFRVAYPDYEHQYSWFDYRSKGFDENRGLRIDLLLASVPLARLAINSGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 250 IRGMEKPSDHAPVWSEFKL 268
>gi|126735878|ref|ZP_01751622.1| exodeoxyribonuclease III [Roseobacter sp. CCS2]
gi|126714435|gb|EBA11302.1| exodeoxyribonuclease III [Roseobacter sp. CCS2]
Length = 266
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 37/131 (28%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIG----------------DTDDFWQKMDPD 49
E L A Q + ++ GD+N + D + + ++
Sbjct: 134 MERLHARAQQLMAHEEVALMCGDYNIIPQAEDAARPDAWRDDALFRQDSRDAYRRILNLG 193
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+E + ++ +FL+ + + + R K
Sbjct: 194 FTEAFRAREAGAGHYSFWDYQAGAWDKNDGIRIDHFLLTPQCADLLNTCWIESDVRGREK 253
Query: 108 LSTHCPLTIEY 118
S H P+ ++
Sbjct: 254 PSDHVPVWVDL 264
>gi|46201082|ref|ZP_00055781.2| COG0708: Exonuclease III [Magnetospirillum magnetotacticum MS-1]
Length = 263
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 23/137 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQK 45
+ WA +I+ ++AGDFN
Sbjct: 128 VREITAWAAAEIRPEDKVILAGDFNIAPLENDVWSHKQMLKVISHTPAEVDLLNAFLASV 187
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--QSDLDT 103
D + P E + R+ R + + + + +
Sbjct: 188 PFVDAMRHFVPPEDKLYTWWSYRSPDWQKN-DRGRRLDHVWVTPALAPSLRGMLVAREAR 246
Query: 104 RRSKLSTHCPLTIEYDF 120
++ S H P+ +++D
Sbjct: 247 AWTQPSDHVPVMVDFDL 263
>gi|288941776|ref|YP_003444016.1| exodeoxyribonuclease III [Allochromatium vinosum DSM 180]
gi|288897148|gb|ADC62984.1| exodeoxyribonuclease III [Allochromatium vinosum DSM 180]
Length = 278
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 35/146 (23%), Gaps = 28/146 (19%)
Query: 3 SQQGEW-LKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
QQ L + + V+ GD N +
Sbjct: 127 KQQFYAGLLDYLRTAFRPDQNIVLLGDMNVAPLDLDIGIGADNAKRWLRTGKCAFLPEER 186
Query: 41 DFWQKMDPDGLLIRFPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--V 94
+++Q + GL+ + R++ + LI +
Sbjct: 187 EWFQALLDWGLIDAYRTRHPETADRFSWFDYRSRGFEREPKHGLRIDHILISAPLRERLI 246
Query: 95 SYDQSDLDTRRSKLSTHCPLTIEYDF 120
K S HCP+ I D
Sbjct: 247 DVGIDYAIRAMDKPSDHCPVWITLDL 272
>gi|218130897|ref|ZP_03459701.1| hypothetical protein BACEGG_02492 [Bacteroides eggerthii DSM 20697]
gi|217987241|gb|EEC53572.1| hypothetical protein BACEGG_02492 [Bacteroides eggerthii DSM 20697]
Length = 254
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 34/140 (24%), Gaps = 28/140 (20%)
Query: 3 SQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q E +++ + +T ++ GD+N +I D +
Sbjct: 117 ERQAFKMVWLEKFRQYVVELQRTRPKLILCGDYNICHEAIDIHDPVRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+K+ R S D +
Sbjct: 177 WMTRFLNEGFIDTFRLLHPDKQEYTWWSYRFNSRAKNKGWRIDYCMVNEPVRPMLKDARI 236
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ S HCP+ +E
Sbjct: 237 LNDAV----HSDHCPMMLEI 252
>gi|307294591|ref|ZP_07574433.1| exodeoxyribonuclease III Xth [Sphingobium chlorophenolicum L-1]
gi|306879065|gb|EFN10283.1| exodeoxyribonuclease III Xth [Sphingobium chlorophenolicum L-1]
Length = 256
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 32/132 (24%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------QKMDPD 49
+ L+ A + +P ++AGD+N + +
Sbjct: 125 MKRLRARATEIWAEEVPAILAGDYNVIPRDKDVYSVKAMADDALMQPESRAAYRRLLGDG 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ + + + L+ + ++ R K
Sbjct: 185 WTDAIASRHPAGGVWTYWDYQMNAWPRDAGFRIDHLLLSPAAADRLIDAQVDKDFRGREK 244
Query: 108 LSTHCPLTIEYD 119
S H P +E
Sbjct: 245 ASDHAPTWVELS 256
>gi|239831752|ref|ZP_04680081.1| exodeoxyribonuclease III (xth) [Ochrobactrum intermedium LMG 3301]
gi|239824019|gb|EEQ95587.1| exodeoxyribonuclease III (xth) [Ochrobactrum intermedium LMG 3301]
Length = 272
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L+ WA ++ P V+AGD+N + F + +
Sbjct: 140 MQRLELWARDRLALEEPLVLAGDYNVIPEPEDARNPGQWVGDALFQPQSRQAFRRLENMG 199
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
E+ ++ + ++ +S D K
Sbjct: 200 FTDAIRASTDEAGIYSFWDYQAGAWQKNNGIRIDHLMLSPEAANRFISSDVEKHVRAWEK 259
Query: 108 LSTHCPLTIEY 118
S H P+TI
Sbjct: 260 PSDHVPVTIRL 270
>gi|332297130|ref|YP_004439052.1| exodeoxyribonuclease III Xth [Treponema brennaborense DSM 12168]
gi|332180233|gb|AEE15921.1| exodeoxyribonuclease III Xth [Treponema brennaborense DSM 12168]
Length = 259
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 22/130 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+ + +K G V+ GD+N I + + +
Sbjct: 131 CRAMLAFCADLVKNGYDIVLCGDYNIAHKPIDLANPKANEGNAGYLPEERAWMDEFTAAG 190
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+F + + R + ++ +F+ + +
Sbjct: 191 FCDTFRKFCTDGQQYTWWSYRFHAREKNIGW--RIDYQCVNEAFAGK--VVASAILNDVQ 246
Query: 108 LSTHCPLTIE 117
S HCP+ +E
Sbjct: 247 GSDHCPIVLE 256
>gi|325276378|ref|ZP_08142153.1| exodeoxyribonuclease III [Pseudomonas sp. TJI-51]
gi|324098490|gb|EGB96561.1| exodeoxyribonuclease III [Pseudomonas sp. TJI-51]
Length = 264
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 32/128 (25%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---DFWQKMDP---------------DG 50
L + A G P ++AGDFN + D +
Sbjct: 131 LIQHARTLYANGHPALLAGDFNVVPTDLDIYDTRSWLKDALLQPESRACFEHLLTQGWTD 190
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ ++ + D+ + S + +K S
Sbjct: 191 AVRHLYPDERVYTFWDYFRNHWARNAGLRIDHLLLNRELSPYLKGAGVDAWVRNEAKASD 250
Query: 111 HCPLTIEY 118
H P+ +E
Sbjct: 251 HAPVWVEL 258
>gi|187918395|ref|YP_001883958.1| exodeoxyribonuclease III [Borrelia hermsii DAH]
gi|119861243|gb|AAX17038.1| exodeoxyribonuclease III [Borrelia hermsii DAH]
Length = 253
Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 22/128 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------G 50
L+ A+ + G VI GDFN I ++ +
Sbjct: 128 LESIANSFVTAGKNVVICGDFNIAHTEIDLSNPKSSRESAGFYIEETTWMDNFLNGGYVD 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F E + R ++ FL++ F L S
Sbjct: 188 TFRMFNGEPGNYTWWDYRTRARERNIGW--RIDYFLVNKVFKSEVR--DALILNEVMGSD 243
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 244 HCPVFLEL 251
>gi|254518588|ref|ZP_05130644.1| exodeoxyribonuclease III Xth [Clostridium sp. 7_2_43FAA]
gi|226912337|gb|EEH97538.1| exodeoxyribonuclease III Xth [Clostridium sp. 7_2_43FAA]
Length = 251
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 12/133 (9%), Positives = 29/133 (21%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + P ++ GD N I + +
Sbjct: 124 DAFRDYLK-VLDEKKPVIVCGDLNVAHKEIDLKNPKTNLRNAGFTEEERSKFTELLNAGF 182
Query: 50 -GLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ + R + D +
Sbjct: 183 VDTFRYFYPDEVGAYSWWSYRFNARAKNAGWRIDYFLVSNSVKDKLEDAKIHSEVLG--- 239
Query: 108 LSTHCPLTIEYDF 120
S HCP+ ++ +
Sbjct: 240 -SDHCPVELKINL 251
>gi|163735846|ref|ZP_02143275.1| exodeoxyribonuclease III, putative [Roseobacter litoralis Och 149]
gi|161390932|gb|EDQ15272.1| exodeoxyribonuclease III, putative [Roseobacter litoralis Och 149]
Length = 260
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIG----------------DTDDFWQKMDPD 49
L + + FV+AGD+N + F + ++
Sbjct: 128 MARLYDRVKELLADETTFVMAGDYNIIPQAEDAAKPESWRDDALFRLESRTAFRKLINLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ ++ + L+ +V R K
Sbjct: 188 LTEAFRARTAGPGHYSFWDYQAGAWNRNNGIRIDHLLLSPQAADMLVDCQIDKDVRGRDK 247
Query: 108 LSTHCPLTIEY 118
S H P+ I+
Sbjct: 248 PSDHVPVWIDL 258
>gi|238786156|ref|ZP_04630108.1| Exodeoxyribonuclease III [Yersinia bercovieri ATCC 43970]
gi|238712925|gb|EEQ04985.1| Exodeoxyribonuclease III [Yersinia bercovieri ATCC 43970]
Length = 271
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 25/137 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+++ +Q+ +I GD N + Q
Sbjct: 135 LQQYLEQQHSADSQLLIMGDINISPTDLDIGIGEENRKRWLRTGKCSFLPEERAWLAQLQ 194
Query: 45 KMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
E R++ + + D + ++
Sbjct: 195 NWGLVDTFRAANPECNDQFSWFDYRSRGFDENRGLRIDLLLASHPLAARCIATGIDYEIR 254
Query: 104 RRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 255 GMEKPSDHAPVWSEFAL 271
>gi|238763171|ref|ZP_04624137.1| Exodeoxyribonuclease III [Yersinia kristensenii ATCC 33638]
gi|238698670|gb|EEP91421.1| Exodeoxyribonuclease III [Yersinia kristensenii ATCC 33638]
Length = 271
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 34/137 (24%), Gaps = 25/137 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+++ +Q++ + +I GD N + + Q
Sbjct: 135 LQQYLEQQLSSDAQVLIMGDVNISPTDMDIGIGEESRKRWLRTGKCSFLPEERAWLERLQ 194
Query: 45 KMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ R++ + + D + ++
Sbjct: 195 NWGLVDTFRAANPDCNDQFSWFDYRSRGFDENRGLRIDLLLASHPLAARCIATGIDYDIR 254
Query: 104 RRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 255 SMEKPSDHAPVWSEFAL 271
>gi|260574689|ref|ZP_05842692.1| exodeoxyribonuclease III Xth [Rhodobacter sp. SW2]
gi|259023106|gb|EEW26399.1| exodeoxyribonuclease III Xth [Rhodobacter sp. SW2]
Length = 263
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMD 47
+++ A + T P V+AGD+N ++ +
Sbjct: 131 MARMRERALGLLATEEPVVLAGDYNVIPQAMDAAKPEAWLEDALYLPQSRAALQRIVNLG 190
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + I D+ S + K
Sbjct: 191 YADAFRLRHPGPGHYSFWDYQAGAWERNNGIRIDHLLLSPQASDLLRDAGIDKAVRAGDK 250
Query: 108 LSTHCPLTIEYD 119
S H P+ I+ D
Sbjct: 251 PSDHVPVWIDLD 262
>gi|206895175|ref|YP_002247534.1| exodeoxyribonuclease III [Coprothermobacter proteolyticus DSM 5265]
gi|206737792|gb|ACI16870.1| exodeoxyribonuclease III [Coprothermobacter proteolyticus DSM 5265]
Length = 250
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 31/129 (24%), Gaps = 20/129 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDP--- 48
+ K ++ ++ +I GDFN + D + +
Sbjct: 118 KAFSKRMEELLRRYPKVLIVGDFNIALKDNDVWDPILLKDTVGTFPEEREALKALLSVGF 177
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDLDTRRS 106
+ EK R + D S V + R
Sbjct: 178 VDVFRAIYPEKVQFTWWDYRQGRMWKNQGMRIDYVFSSETLMPSIEDVYVVEEIRKRRNP 237
Query: 107 KLSTHCPLT 115
K S H P+
Sbjct: 238 KPSDHAPVV 246
>gi|225175437|ref|ZP_03729432.1| exodeoxyribonuclease III Xth [Dethiobacter alkaliphilus AHT 1]
gi|225169189|gb|EEG77988.1| exodeoxyribonuclease III Xth [Dethiobacter alkaliphilus AHT 1]
Length = 260
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 31/130 (23%), Gaps = 20/130 (15%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDGLL 52
++ + P V+ GD N + + D +
Sbjct: 131 EYLQRNFSPSDPLVVVGDLNVALEDLDVHDPKLLEDTVCTMPEERRWLQDVLDWGLVDSF 190
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLST 110
+ +S + + D + + + RR K S
Sbjct: 191 RHLNPDAQSFTWWDYVGGAIWQDKGMRIDYILCSKPLAEKMAEVEVDLWPRRRRTPKPSD 250
Query: 111 HCPLTIEYDF 120
H P+ + +
Sbjct: 251 HAPVILSLNL 260
>gi|309389686|gb|ADO77566.1| exodeoxyribonuclease III Xth [Halanaerobium praevalens DSM 2228]
Length = 258
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 38/134 (28%), Gaps = 22/134 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + +++ K G VI GD+N + I D K
Sbjct: 127 DAILDYSENLRKKGKEVVICGDYNTAHHPIDLHDPASNKKTSGFMPIEREWLDKLEEKGY 186
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F EKE R K+ D +++ D
Sbjct: 187 LDSYRYFNPEKECYSWWSYRTKARSRNAGWRIDYHFVSAGLESKLINADILTE----VMG 242
Query: 109 STHCPLTIEYDFEK 122
S HCP+TI ++
Sbjct: 243 SDHCPVTITLALDE 256
>gi|295689871|ref|YP_003593564.1| endonuclease/exonuclease/phosphatase [Caulobacter segnis ATCC
21756]
gi|295431774|gb|ADG10946.1| Endonuclease/exonuclease/phosphatase [Caulobacter segnis ATCC
21756]
Length = 288
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 12/119 (10%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL--LIRFPQEK 59
L +Q L++W D + G+ F + GDFNR++ D W+++D E
Sbjct: 179 LMRQVPILERWIDARAAEGVRFAVLGDFNRRLARAD--DVVWREIDDADPPNADLSLAEG 236
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ R +D+ V+D L F ++Y + S HCP+
Sbjct: 237 SAGPKCDPRYSEFIDHIVLDARAARDL--EGFEELTY------AAGERGSDHCPVLARL 287
>gi|148643539|ref|YP_001274052.1| exodeoxyribonuclease, XthA [Methanobrevibacter smithii ATCC 35061]
gi|222444963|ref|ZP_03607478.1| hypothetical protein METSMIALI_00579 [Methanobrevibacter smithii
DSM 2375]
gi|261350463|ref|ZP_05975880.1| exodeoxyribonuclease III [Methanobrevibacter smithii DSM 2374]
gi|148552556|gb|ABQ87684.1| exodeoxyribonuclease, XthA [Methanobrevibacter smithii ATCC 35061]
gi|222434528|gb|EEE41693.1| hypothetical protein METSMIALI_00579 [Methanobrevibacter smithii
DSM 2375]
gi|288861246|gb|EFC93544.1| exodeoxyribonuclease III [Methanobrevibacter smithii DSM 2374]
Length = 257
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 35/133 (26%), Gaps = 22/133 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-----------QKMDPD----- 49
L + G +I GD N N I + ++ D
Sbjct: 129 CNALLDLLEDLKNQGQNLIITGDVNIAHNPIDVYNPANCEGKSGYLIEEREWLDDLLASG 188
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ R ++ F ++ F +S
Sbjct: 189 FVDTFRMFDDSGDNFTWWSYRTRARDRNAGW--RLDYFFVNEEFKNK--VKSATIKNDVF 244
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+E D
Sbjct: 245 GSDHCPVTLELDL 257
>gi|332561082|ref|ZP_08415400.1| exodeoxyribonuclease III [Rhodobacter sphaeroides WS8N]
gi|332274880|gb|EGJ20196.1| exodeoxyribonuclease III [Rhodobacter sphaeroides WS8N]
Length = 255
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 31/129 (24%), Gaps = 18/129 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
L A++ ++ +P V+AGDFN +
Sbjct: 127 LLNHAEEVLRHDVPVVLAGDFNVMPTDLDVHRPERWREDALFRPEARAAFARLLAQGWTD 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ E + + D+ + K S
Sbjct: 187 SIRHLYPEDRIYTFWDYLRNAWERDAGLRLDHLLLSPSLLTRLKGAGVDRHVRGWEKASD 246
Query: 111 HCPLTIEYD 119
H P+ IE D
Sbjct: 247 HAPVWIEID 255
>gi|312113058|ref|YP_004010654.1| exodeoxyribonuclease III Xth [Rhodomicrobium vannielii ATCC 17100]
gi|311218187|gb|ADP69555.1| exodeoxyribonuclease III Xth [Rhodomicrobium vannielii ATCC 17100]
Length = 262
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 21/133 (15%)
Query: 7 EWLKKW---ADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMD 47
EWL ++ A+ + PF +AGD+N I + F + ++
Sbjct: 128 EWLARFKAHAETLLSYEEPFALAGDYNIIPRGIDVYNPAAWTEDALYRLESRQAFRRILN 187
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRR 105
++ + + L+ + S
Sbjct: 188 LGLADAVEACNSGGGQFTFWDYQAGAWQKNLGLRIDHILLSPQAFSRLRSTVIDRTPRSW 247
Query: 106 SKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 248 DKPSDHTPVQVTL 260
>gi|281422472|ref|ZP_06253471.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
gi|281403455|gb|EFB34135.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
Length = 250
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 30/129 (23%), Gaps = 23/129 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+K+ + P +I GD N I + + +
Sbjct: 127 RKFLKS-LDAKKPVIICGDLNVAHEEIDIKNPKTNRRNAGFTDEEREKMTVLLNDGFTDS 185
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++ + R K+ D I S H
Sbjct: 186 FRYLHPDEVTYSWWSYRFKAREKNAGWRIDYFLVSDRIKEQITEAKIHTEIMG----SDH 241
Query: 112 CPLTIEYDF 120
CP+ ++ F
Sbjct: 242 CPVEVDLTF 250
>gi|330719976|gb|EGG98428.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC2047]
Length = 271
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 31/139 (22%), Gaps = 27/139 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD-------------------------TDDFW 43
L + + V+ GDFN D
Sbjct: 133 LMNYLETHHTPSDRVVVMGDFNISPTDNDIGIGEKNAKRWLQTGKCSFLPEEREWYDRLL 192
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--QSDL 101
D I+ P+ + R+K D + LI D
Sbjct: 193 AWGLLDSFRIQNPEVNDRYSWFDYRSKGFDDTPKRGLRIDHILITQPLVEHLADTGIDYE 252
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S HCP+ +
Sbjct: 253 ARAMEKPSDHCPVWASLNL 271
>gi|317048409|ref|YP_004116057.1| exodeoxyribonuclease III [Pantoea sp. At-9b]
gi|316950026|gb|ADU69501.1| exodeoxyribonuclease III [Pantoea sp. At-9b]
Length = 268
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 36/139 (25%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + ++ P +I GD N + + +
Sbjct: 130 QDLQSYLQTQLAVDKPVLIMGDMNISSTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
++ + Q E+ R+K D + D + ++
Sbjct: 190 LLNWGLVDTWRAQYPETADRFSWFDYRSKGFDDNRGLRIDLLLASQPLASRCIASGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ +
Sbjct: 250 IRSMEKPSDHAPVWSTFKL 268
>gi|149370979|ref|ZP_01890574.1| exodeoxyribonuclease III [unidentified eubacterium SCB49]
gi|149355765|gb|EDM44323.1| exodeoxyribonuclease III [unidentified eubacterium SCB49]
Length = 276
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 31/130 (23%), Gaps = 22/130 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ K VI GD+N +I + K
Sbjct: 150 QDYVNELKKEIPNLVICGDYNICHEAIDIHNPVSNKNSSGFLPVEREWLGNFIDSGFIDS 209
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+E ++ R + + D I S H
Sbjct: 210 FRFLNKEPDNYTWWSYRANARANNKGWRIDYNMVATPLKEKIKRAVILPAAV----HSDH 265
Query: 112 CPLTIEYDFE 121
CP +E D
Sbjct: 266 CPHMVELDMS 275
>gi|34540111|ref|NP_904590.1| exodeoxyribonuclease III [Porphyromonas gingivalis W83]
gi|34396422|gb|AAQ65489.1| exodeoxyribonuclease III [Porphyromonas gingivalis W83]
Length = 254
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 36/140 (25%), Gaps = 28/140 (20%)
Query: 3 SQQG---EWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q WL+ + ++ K+ ++ GD+N I D +
Sbjct: 117 ERQAFKMVWLEHFQSYVNELRKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
E R ++ D + + I D
Sbjct: 177 WMSRFLADGYVDTFRHTHPELVLYSWWSYRFQARSRNKGWRIDYCMVTNNLADRIKGADI 236
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ S HCP+ +E
Sbjct: 237 LNEAV----HSDHCPIVLEI 252
>gi|224500776|ref|ZP_03669125.1| hypothetical protein LmonF1_14336 [Listeria monocytogenes Finland
1988]
gi|254829588|ref|ZP_05234275.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284802226|ref|YP_003414091.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284995368|ref|YP_003417136.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|258602005|gb|EEW15330.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284057788|gb|ADB68729.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284060835|gb|ADB71774.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
Length = 251
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 33/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + ++ + P V+ GD N I + + +
Sbjct: 124 DAILEYVK-NLDNTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + ++ R + D +V
Sbjct: 183 IDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH----ADVL 238
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E +F
Sbjct: 239 GSDHCPVELELNF 251
>gi|150007753|ref|YP_001302496.1| exodeoxyribonuclease [Parabacteroides distasonis ATCC 8503]
gi|256840019|ref|ZP_05545528.1| exodeoxyribonuclease III [Parabacteroides sp. D13]
gi|149936177|gb|ABR42874.1| exodeoxyribonuclease [Parabacteroides distasonis ATCC 8503]
gi|256738949|gb|EEU52274.1| exodeoxyribonuclease III [Parabacteroides sp. D13]
Length = 284
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 25/133 (18%)
Query: 8 WLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------------- 49
WL+ + + K+ ++ GD+N I D +
Sbjct: 156 WLEDFQKYVVELQKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEEREWMTRFLSA 215
Query: 50 ---GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+K+ R S ++ ++ ++ +
Sbjct: 216 GFTDTFRFLNPDKQEYTWWSYRFNSRSKNKGW--RIDYCMVSDNMKPK--VKAAYILNDA 271
Query: 107 KLSTHCPLTIEYD 119
S HCP +E +
Sbjct: 272 VHSDHCPAVLEIE 284
>gi|71278943|ref|YP_268710.1| endonuclease/exonuclease/phosphatase family protein [Colwellia
psychrerythraea 34H]
gi|71144683|gb|AAZ25156.1| endonuclease/exonuclease/phosphatase family protein [Colwellia
psychrerythraea 34H]
Length = 301
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 6/125 (4%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN------RKINSIGDTDDFWQKMDPDGLLIRF 55
LS+Q L++W D +++ GDFN + D + D +
Sbjct: 177 LSKQISPLEQWIDLHASQDAAYIVLGDFNRRFSQDIALKYSEDKGLWQALNDDGKETLWT 236
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
P ++ K +D+ + K I++SF + + LS HCP++
Sbjct: 237 PTMTANSGCWGGYYKEYIDHIIFSPKAKEKYIESSFEQLIFKPKYTKELSRNLSDHCPIS 296
Query: 116 IEYDF 120
++
Sbjct: 297 VKVKL 301
>gi|34763743|ref|ZP_00144662.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27886479|gb|EAA23735.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 253
Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 39/135 (28%), Gaps = 24/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
+ +K+ ++ P V+ GD N I + + ++ G
Sbjct: 124 DEFRKYLK-NLEKKKPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKFTELLDSGF 182
Query: 52 LIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ F + R ++ + D ++V +
Sbjct: 183 VDTFRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQIEG--- 239
Query: 108 LSTHCPLTIEYDFEK 122
S HCP+ + DF K
Sbjct: 240 -SDHCPVVLILDFNK 253
>gi|167762826|ref|ZP_02434953.1| hypothetical protein BACSTE_01184 [Bacteroides stercoris ATCC
43183]
gi|167699166|gb|EDS15745.1| hypothetical protein BACSTE_01184 [Bacteroides stercoris ATCC
43183]
Length = 266
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 38/140 (27%), Gaps = 28/140 (20%)
Query: 3 SQQG---EWL---KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q EWL +++A + ++T V+ GD+N +I D +
Sbjct: 129 ERQAFKMEWLEHFRRYAVELLRTRPKLVLCGDYNICHEAIDIHDPVRNATNSGFLPEERE 188
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ R S + + + +
Sbjct: 189 WMTRFLNEGFIDTFRLLHPDSREYTWWSYRFNSRAKNKGW--RIDYCMASEAVRPMLKEA 246
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ S HCP+ +E
Sbjct: 247 --RILNDAVHSDHCPMMLEL 264
>gi|298375698|ref|ZP_06985655.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_19]
gi|298268198|gb|EFI09854.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_19]
Length = 284
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 25/133 (18%)
Query: 8 WLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------------- 49
WL+ + + K+ ++ GD+N I D +
Sbjct: 156 WLEDFQKYVVELQKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEEREWMTRFLSA 215
Query: 50 ---GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+K+ R S ++ ++ ++ +
Sbjct: 216 GFTDTFRFLNPDKQEYTWWSYRFNSRFKNKGW--RIDYCMVSDNMKPK--VKAAYILNDA 271
Query: 107 KLSTHCPLTIEYD 119
S HCP +E +
Sbjct: 272 VHSDHCPAVLEIE 284
>gi|154493449|ref|ZP_02032769.1| hypothetical protein PARMER_02788 [Parabacteroides merdae ATCC
43184]
gi|154086659|gb|EDN85704.1| hypothetical protein PARMER_02788 [Parabacteroides merdae ATCC
43184]
Length = 292
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 25/118 (21%), Gaps = 4/118 (3%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L Q T GDFN + D +
Sbjct: 179 RESSKLLIARIKQIAGTDATVFATGDFNAVPTDEPMVTLASDGLLLDSYDLSEQPRYG-- 236
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + + + Y + S H P+ I+ F
Sbjct: 237 --TEGTYNSFKTDSEMMNRIDYIWVTKGTKVKKYAVLNDMQYGRFPSDHFPVMIQVTF 292
>gi|88854941|ref|ZP_01129607.1| exodeoxyribonuclease III [marine actinobacterium PHSC20C1]
gi|88816102|gb|EAR25958.1| exodeoxyribonuclease III [marine actinobacterium PHSC20C1]
Length = 278
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 31/136 (22%), Gaps = 21/136 (15%)
Query: 7 EWLKKWADQ-----KIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQK 45
EWL A Q + P + GDFN I D F
Sbjct: 132 EWLANLAAQTSNWMRENPEQPLALMGDFNIAPLDIDVWDVAAFEGKTHISEPERAAFAAF 191
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ + + + + D + + +
Sbjct: 192 EKAGLIDALRSRGIKGYTYWDYQRLRFPRNEGMRIDFILGSPQFDELVTGASIDREERKG 251
Query: 106 SKLSTHCPLTIEYDFE 121
S H P+ ++ +
Sbjct: 252 DGPSDHVPVVVDLAID 267
>gi|114766201|ref|ZP_01445201.1| Exodeoxyribonuclease III [Pelagibaca bermudensis HTCC2601]
gi|114541572|gb|EAU44615.1| Exodeoxyribonuclease III [Roseovarius sp. HTCC2601]
Length = 260
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD 49
+ L+ A + + + +P V+AGD+N + F + ++
Sbjct: 128 MKRLEARARELLASEMPAVMAGDYNVIPQAEDAAKPQAWIEDALYLPETRAAFRRILNLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSK 107
+ + ++ + L+ + + R K
Sbjct: 188 FTEAFRARTQGPGHYSFWDYQAGAWQRNNGIRIDHLLLTPQAADLMTDVQIDRDIRGRDK 247
Query: 108 LSTHCPLTIEY 118
S H P+ I+
Sbjct: 248 PSDHVPVWIDL 258
>gi|294677951|ref|YP_003578566.1| exodeoxyribonuclease III [Rhodobacter capsulatus SB 1003]
gi|294476771|gb|ADE86159.1| exodeoxyribonuclease III-1 [Rhodobacter capsulatus SB 1003]
Length = 259
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 32/132 (24%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQK---MD 47
++ + +++ P V AGD+N +++ +
Sbjct: 127 MARMQARVETLLRSEEPLVFAGDYNVIPQDEDAAKPESWRADALALPETRAAFRRIVNLG 186
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + I D+ + + K
Sbjct: 187 LTDAFRARVPGPGQYSFWDYQAGAWQKNNGIRIDHLLLSPQAADLLRDAGIDKEVRAGEK 246
Query: 108 LSTHCPLTIEYD 119
S H P+ I+ D
Sbjct: 247 PSDHVPVWIDLD 258
>gi|262381739|ref|ZP_06074877.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_33B]
gi|262296916|gb|EEY84846.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_33B]
Length = 253
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 25/133 (18%)
Query: 8 WLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------------- 49
WL+ + + K+ ++ GD+N I D +
Sbjct: 125 WLEDFQKYVVELQKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEEREWMTRFLSA 184
Query: 50 ---GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+K+ R S ++ ++ ++ +
Sbjct: 185 GFTDTFRFLNPDKQEYTWWSYRFNSRSKNKGW--RIDYCMVSDNMKPK--VKAAYILNDA 240
Query: 107 KLSTHCPLTIEYD 119
S HCP +E +
Sbjct: 241 VHSDHCPAVLEIE 253
>gi|91789279|ref|YP_550231.1| exodeoxyribonuclease III [Polaromonas sp. JS666]
gi|91698504|gb|ABE45333.1| Exodeoxyribonuclease III [Polaromonas sp. JS666]
Length = 272
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 35/130 (26%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E L + A ++G P +AGDFN + + ++ G
Sbjct: 126 ERLNRHAQALYQSGQPVALAGDFNVVPTDFDIYNPKSWLKDALLQPESREAYARLLSQGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ ++ + + D+ + + + +
Sbjct: 186 VDSLRHLHPDERIYTFWDYFRQHWQKNSGLRIDHILLNAELAPGLKAAGVDTWVRDEEHA 245
Query: 109 STHCPLTIEY 118
S H P +E
Sbjct: 246 SDHAPTWVEL 255
>gi|27366781|ref|NP_762308.1| metal-dependent hydrolase [Vibrio vulnificus CMCP6]
gi|27358348|gb|AAO07298.1|AE016809_60 Metal-dependent hydrolase [Vibrio vulnificus CMCP6]
Length = 297
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 6/123 (4%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L + + L +W Q+ +++ GDFN + D ++ G + ++ ++
Sbjct: 178 LRLESQALGQWISQRQSNKQTYLVLGDFNHNLAYR--NDWLMNELTSAGKIHLLTEDTKA 235
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---SKLSTHCPLTIEY 118
C V + + + + + ++ S +Q + +LS HCP++
Sbjct: 236 NCKVRSKKQPNKVHSFRSL-IDHIIVSEGLSASQAEQKLFTSNDVLKYQLSDHCPVSTTV 294
Query: 119 DFE 121
Sbjct: 295 TLP 297
>gi|284007473|emb|CBA72938.1| exodeoxyribonuclease III [Arsenophonus nasoniae]
Length = 269
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 30/140 (21%), Gaps = 25/140 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + + +I GD N D
Sbjct: 130 QDLQLYLQSNLSPQSHIIIMGDMNISPTDHDIGIGEINRKRWLSAGKCSFLPEEREWMDK 189
Query: 43 WQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + E + R+K +D + D
Sbjct: 190 LKSWGLIDTYRQQNPEITDQFSWFDYRSKGFVDNRGLRIDLILASSSLFACCGETGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYDFE 121
K S H P+ +++
Sbjct: 250 IRSMEKPSDHAPIWAKFELN 269
>gi|238757025|ref|ZP_04618213.1| Exodeoxyribonuclease III [Yersinia aldovae ATCC 35236]
gi|238704855|gb|EEP97384.1| Exodeoxyribonuclease III [Yersinia aldovae ATCC 35236]
Length = 228
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 33/137 (24%), Gaps = 25/137 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ + +Q++ +I GD N + + Q
Sbjct: 92 LQNYLEQQLSADAQVLIMGDLNISPTDLDIGIGEESRKRWLRTGKCSFLPEERAWLERLQ 151
Query: 45 KMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + R++ + + D + ++
Sbjct: 152 NWGLVDTFRAANPDCNQQFSWFDYRSRGFDENRGLRIDLLLASQPLAARCIATGIDYDIR 211
Query: 104 RRSKLSTHCPLTIEYDF 120
K S H P+ E+
Sbjct: 212 SMEKPSDHAPVWSEFAL 228
>gi|301310211|ref|ZP_07216150.1| exodeoxyribonuclease III [Bacteroides sp. 20_3]
gi|300831785|gb|EFK62416.1| exodeoxyribonuclease III [Bacteroides sp. 20_3]
Length = 284
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 25/133 (18%)
Query: 8 WLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------------- 49
WL+ + + K+ ++ GD+N I D +
Sbjct: 156 WLEDFQKYVVELQKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEEREWMTRFLSA 215
Query: 50 ---GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+K+ R S ++ ++ ++ +
Sbjct: 216 GFTDTFRFLNPDKQEYTWWSYRFNSRSKNKGW--RIDYCMVSDNMKPK--VKAAYILNDA 271
Query: 107 KLSTHCPLTIEYD 119
S HCP +E +
Sbjct: 272 VHSDHCPAVLEIE 284
>gi|71083659|ref|YP_266379.1| exodeoxyribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
gi|71062772|gb|AAZ21775.1| exodeoxyribonuclease III [Candidatus Pelagibacter ubique HTCC1062]
Length = 258
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 35/132 (26%), Gaps = 21/132 (15%)
Query: 8 WLKKWADQKI---KTGIPFVIAGDFNRKINSIGDTDDF------------------WQKM 46
WL K Q K ++AGDFN ++ + +
Sbjct: 126 WLDKLIKQLKTLSKKNENIILAGDFNILPSAEDAYNIKGFEDDALYRLEIRKKFREMINL 185
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
EKE + + D+ + + + + +
Sbjct: 186 GFHDAYRHIHGEKEGYTYWDYMRGAWQKNNGLRIDHFLVSNSLLNIVKNVNINKDPRGKG 245
Query: 107 KLSTHCPLTIEY 118
K S H P+ IE
Sbjct: 246 KPSDHTPIEIEL 257
>gi|160884274|ref|ZP_02065277.1| hypothetical protein BACOVA_02252 [Bacteroides ovatus ATCC 8483]
gi|156110013|gb|EDO11758.1| hypothetical protein BACOVA_02252 [Bacteroides ovatus ATCC 8483]
Length = 253
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 34/140 (24%), Gaps = 28/140 (20%)
Query: 3 SQQG---EWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q WL+ + + K+ ++ GD+N I D +
Sbjct: 117 ERQAFKMAWLEDFQKYVMELQKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
EK+ R S ++ +
Sbjct: 177 WMTRFLSAGYVDSFRTLCPEKQEYTWWSYRFNSRAKNKGW--RIDYCMVSEPVRPLLKRA 234
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ S HCP+ +E
Sbjct: 235 --YILNEAVHSDHCPMALEI 252
>gi|213420904|ref|ZP_03353970.1| exonuclease III [Salmonella enterica subsp. enterica serovar Typhi
str. E01-6750]
Length = 144
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L+ + + ++K P +I GD N + + +
Sbjct: 6 QNLQNYLETELKCDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMSR 65
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + ++ R+K +D + D +
Sbjct: 66 LLKWGLVDTFRQANPQTMDKFSWFDYRSKGFVDNRGLRIDLLLASAPLAERCAETGIDYD 125
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 126 IRSMEKPSDHAPVWATFR 143
>gi|218673944|ref|ZP_03523613.1| exodeoxyribonuclease III Xth [Rhizobium etli GR56]
Length = 263
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
E L+ +A +++ V+AGD+N D + +
Sbjct: 129 MERLRMFAAERLAYEEILVLAGDYNVIPEPHDCFDPKVWESDALFLPQTREAFRRLENLG 188
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + I D+ + + + S K
Sbjct: 189 LTDAVRATTDATRLYSFWDYQAGAWPKNNGIRIDHLLLSPEAADRMTSAAIEKHVRAWEK 248
Query: 108 LSTHCPLTIEYDF 120
S H P+ +DF
Sbjct: 249 PSDHVPVVAYFDF 261
>gi|153806611|ref|ZP_01959279.1| hypothetical protein BACCAC_00881 [Bacteroides caccae ATCC 43185]
gi|149131288|gb|EDM22494.1| hypothetical protein BACCAC_00881 [Bacteroides caccae ATCC 43185]
Length = 263
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 34/140 (24%), Gaps = 28/140 (20%)
Query: 3 SQQG---EWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q WL+ + + K+ ++ GD+N I D +
Sbjct: 118 ERQAFKMVWLEDFQKYVLELQKSRPNLILCGDYNICHEPIDIHDPVRNAKNSGFLPEERE 177
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
EK+ R S + +
Sbjct: 178 WMTRFLAAGFIDSFRMLYPEKQEYTWWSYRFNSRAKNKGW--RIDYCMASEPVRPLLM-- 233
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
S + S HCP+ +E
Sbjct: 234 SARILNDAMHSDHCPMMLEI 253
>gi|237740967|ref|ZP_04571448.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294784430|ref|ZP_06749721.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
gi|229431011|gb|EEO41223.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294488002|gb|EFG35357.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
Length = 253
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 24/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ +K+ ++ P V+ GD N I + + +
Sbjct: 124 DEFRKYLK-NLEKKKPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKFTELLDSGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ R ++ + D ++V +
Sbjct: 183 IDTFRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQIEG--- 239
Query: 108 LSTHCPLTIEYDFEK 122
S HCP+ + DF K
Sbjct: 240 -SDHCPVVLILDFNK 253
>gi|330999011|ref|ZP_08322736.1| exodeoxyribonuclease III [Parasutterella excrementihominis YIT
11859]
gi|329575753|gb|EGG57279.1| exodeoxyribonuclease III [Parasutterella excrementihominis YIT
11859]
Length = 295
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 27/142 (19%)
Query: 3 SQQG-----EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------- 49
QQ + +K D+ ++ G V+ GDFN I + +
Sbjct: 156 RQQAKFRFLDVIKGRLDELLRDGRDVVLCGDFNIAHKEIDIKNWKGNLKNSGFLPEERQW 215
Query: 50 ----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
+ R + R ++ ++ + + + +
Sbjct: 216 ITDRLREGWQDVFRRLDPRPDRFTWWSNRGRARINNVGW--RIDYQFSTPAIASTAKETD 273
Query: 100 DLDTRRSKLSTHCPLTIEYDFE 121
R + S H PLT+ YDF
Sbjct: 274 IY--RDERFSDHAPLTVVYDFN 293
>gi|320163204|gb|EFW40103.1| APEX nuclease [Capsaspora owczarzaki ATCC 30864]
Length = 429
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 28/122 (22%), Gaps = 22/122 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
+ P V+ GD N N I + K E
Sbjct: 312 LDAKKPVVLCGDLNVAHNEIDLKNPKTNKRSAGFTPQEREGFTTILGTEFVDSFRVLYPE 371
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + R+ S F++ F + S HCP+ +
Sbjct: 372 ESAYSFWSYRHNSRALNVGW--RLDYFVVSQRFMQSVA--DSQIRSQVYGSDHCPIVLHL 427
Query: 119 DF 120
Sbjct: 428 SL 429
>gi|37676556|ref|NP_936952.1| hypothetical protein VVA0896 [Vibrio vulnificus YJ016]
gi|37201098|dbj|BAC96922.1| hypothetical protein [Vibrio vulnificus YJ016]
Length = 297
Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 6/123 (4%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L + + L +W Q+ +++ GDFN + D ++ G + ++ ++
Sbjct: 178 LRLESQALGQWISQRQSNKQTYLVLGDFNHNLAYR--NDWLMNELTSAGKIHLLTEDTKA 235
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---SKLSTHCPLTIEY 118
C V + + + + + ++ S +Q + +LS HCP++
Sbjct: 236 NCKVRSKKQPNKVHSFRSL-IDHIIVSEGLSASQAEQKLFTSNDVLKYQLSDHCPVSTTV 294
Query: 119 DFE 121
Sbjct: 295 TLP 297
>gi|284030471|ref|YP_003380402.1| exodeoxyribonuclease III Xth [Kribbella flavida DSM 17836]
gi|283809764|gb|ADB31603.1| exodeoxyribonuclease III Xth [Kribbella flavida DSM 17836]
Length = 286
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 27/130 (20%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPD 49
WL D ++ GD N D
Sbjct: 126 WLAALRDVVAGGPAEQIVCGDMNIAPTDADVFDPAAFQGSTHVTAPERQALAELMATGLH 185
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ + R + D + + + + + S
Sbjct: 186 DVVRDRWPTERVFSYWDYRAGMFHQDLGMRIDLTLASDPVAERVKAAWIDRKARKGTGPS 245
Query: 110 THCPLTIEYD 119
H P+ ++ D
Sbjct: 246 DHAPVIVDLD 255
>gi|319948313|ref|ZP_08022460.1| exodeoxyribonuclease III [Dietzia cinnamea P4]
gi|319438033|gb|EFV93006.1| exodeoxyribonuclease III [Dietzia cinnamea P4]
Length = 266
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 29/132 (21%), Gaps = 20/132 (15%)
Query: 8 WLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTD------------------DFWQKMD 47
L+ A ++ + GD+N D +
Sbjct: 135 RLRDHAAAELVADPDAQVALVGDWNVAPLDEDVWDMEVFEGKTHVSGPERLAVAAFDGAG 194
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + S + D + + + + +
Sbjct: 195 FREVTREYTPGPGVYTYWDYTGLSFPKRKGMRIDFQLHSPALAARVTGAFIDREERKGKG 254
Query: 108 LSTHCPLTIEYD 119
S H P+ +E D
Sbjct: 255 ASDHAPVVVELD 266
>gi|332882010|ref|ZP_08449645.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332679934|gb|EGJ52896.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 250
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 33/131 (25%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + Q + T P ++ GD N I + + +
Sbjct: 124 EAFRAYLLQ-LDTRKPVIVCGDLNVAHREIDLKNPKSNRKNAGFTDEEREKFGILLDSGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++E R K+ D + S
Sbjct: 183 TDTFRFFYPDREGIYSWWSYRFKAREKNAGWRIDYFLVSKRLEAQLKSATIHTEIFG--- 239
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 240 -SDHCPVEVDL 249
>gi|256846719|ref|ZP_05552175.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
gi|256717939|gb|EEU31496.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
Length = 253
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 24/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ +K+ ++ P V+ GD N I + + +
Sbjct: 124 DEFRKYLK-NLEKKKPVVVCGDLNVAHEEIDLKNPKTNRRNAGFTDEERGKFTELLDSGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ R ++ + D ++V +
Sbjct: 183 IDTFRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQIEG--- 239
Query: 108 LSTHCPLTIEYDFEK 122
S HCP+ + DF K
Sbjct: 240 -SDHCPVVLILDFNK 253
>gi|255036745|ref|YP_003087366.1| exodeoxyribonuclease III Xth [Dyadobacter fermentans DSM 18053]
gi|254949501|gb|ACT94201.1| exodeoxyribonuclease III Xth [Dyadobacter fermentans DSM 18053]
Length = 254
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 26/126 (20%), Gaps = 22/126 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLI 53
W ++ K +I GD+N I D +
Sbjct: 133 WVNELRKERPNLIICGDYNIAHTEIDIHDPVRNQKSSGFLPEERAWMTEWFSNGYTDAFR 192
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
R + + + + + S HCP
Sbjct: 193 FMNPTLRQYSWWTYRAGARGNNKGW--RIDYISVSEPLKFRI--IASRQYNDAVHSDHCP 248
Query: 114 LTIEYD 119
+ +E
Sbjct: 249 VWLEIQ 254
>gi|218258829|ref|ZP_03475089.1| hypothetical protein PRABACTJOHN_00746 [Parabacteroides johnsonii
DSM 18315]
gi|218225190|gb|EEC97840.1| hypothetical protein PRABACTJOHN_00746 [Parabacteroides johnsonii
DSM 18315]
Length = 292
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 25/118 (21%), Gaps = 4/118 (3%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L Q T GDFN + D +
Sbjct: 179 RESSKLLIARIKQIAGTDATVFATGDFNAVPTDEPMVTLASDGLLLDSYGLSEQPHYG-- 236
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + + + Y + S H P+ I+ F
Sbjct: 237 --TEGTYNSFKTDSEMKNRIDYIWVTKGTKVKKYAVLNDMQYGRFPSDHFPVMIQVAF 292
>gi|189466093|ref|ZP_03014878.1| hypothetical protein BACINT_02463 [Bacteroides intestinalis DSM
17393]
gi|189434357|gb|EDV03342.1| hypothetical protein BACINT_02463 [Bacteroides intestinalis DSM
17393]
Length = 254
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 15/141 (10%), Positives = 35/141 (24%), Gaps = 28/141 (19%)
Query: 3 SQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q E +++ K+ ++ GD+N I D +
Sbjct: 117 ERQAFKMVWLEKFQEYVTGLRKSRPKLILCGDYNICHEPIDIHDPIRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
E++ R S ++ + +
Sbjct: 177 WMTRFLNAGFIDTFRLLHPEQQEYTWWSYRFNSRAKNKGW--RIDYCMVTELVRPLLREA 234
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
+ S HCP+ ++ +
Sbjct: 235 --RILNDAVHSDHCPMLLDIE 253
>gi|325474290|gb|EGC77478.1| exodeoxyribonuclease III [Treponema denticola F0402]
Length = 256
Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 34/129 (26%), Gaps = 22/129 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
+ ++ D + G ++ GDFN I + +
Sbjct: 130 CAAILEFCDSVQEEGNNVILCGDFNIAHKPIDLANPKSNEKNPGYLPEERAWMDEFTSSG 189
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F QE R ++ +++SF + +
Sbjct: 190 YTDTFRHFCQEPAKYTWWSYRFRAREKNIGW--RLDYHCVNDSFLAKIKE--SIILDGVM 245
Query: 108 LSTHCPLTI 116
S HCP+ +
Sbjct: 246 GSDHCPVKL 254
>gi|325954395|ref|YP_004238055.1| exodeoxyribonuclease III Xth [Weeksella virosa DSM 16922]
gi|323437013|gb|ADX67477.1| exodeoxyribonuclease III Xth [Weeksella virosa DSM 16922]
Length = 255
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 38/136 (27%), Gaps = 23/136 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQ 44
Q E + + VIAGD+N +I D F
Sbjct: 124 QFCEDFLNYIRNLKQNIPNLVIAGDYNICHEAIDIHDPICNAKVSGFLPVERDWMTRFID 183
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + F +E R + + ++ + L
Sbjct: 184 QCEMIDSYRFFVKEPHHYTWWSYRANARANNKGW--RIDYHMVSHQLKNNIKRVGILT-- 239
Query: 105 RSKLSTHCPLTIEYDF 120
+K S HCP+ +E +F
Sbjct: 240 EAKHSDHCPILVELEF 255
>gi|311745839|ref|ZP_07719624.1| endonuclease/exonuclease/phosphatase family protein [Algoriphagus
sp. PR1]
gi|311302431|gb|EAZ80320.2| endonuclease/exonuclease/phosphatase family protein [Algoriphagus
sp. PR1]
Length = 286
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 4/119 (3%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + + G P ++ GDFN ++ T D LI
Sbjct: 172 EESSKLVMNQVAKLNPEGAPAIMMGDFNVTPDNPAYTTITSNPAWKDSRLISKIPSYG-- 229
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ D + + ++ + + + S H P+ +E DF+
Sbjct: 230 --PKGTFTGFDWERMPDGIIDHVFVYGPIEVIRHGILSDNYGKKYPSDHFPVLVELDFK 286
>gi|283779137|ref|YP_003369892.1| endonuclease/exonuclease/phosphatase [Pirellula staleyi DSM 6068]
gi|283437590|gb|ADB16032.1| Endonuclease/exonuclease/phosphatase [Pirellula staleyi DSM 6068]
Length = 307
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 41/125 (32%), Gaps = 3/125 (2%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK--MDPDGLLIRFPQEKE 60
++ G+ + + + + +P V+ GDFN ++ S + + L+ +
Sbjct: 182 AESGKLIARRLKE-LAADLPVVLVGDFNARLASDPIQNVLAKPDSASDWRLVDAQGVSAK 240
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
D + + + ++ L +S H P+ +F
Sbjct: 241 KPTGPTATFNGFKAIPEGDNKIDFIFVRDFVVLDHVVENPLTPAGRFVSDHLPVIANIEF 300
Query: 121 EKGNV 125
K +V
Sbjct: 301 PKESV 305
>gi|150017217|ref|YP_001309471.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
gi|149903682|gb|ABR34515.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
Length = 254
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 33/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ +K+ + ++ P +I GD N I + + +
Sbjct: 127 DVFRKYLKE-LEKNKPVIICGDLNVAHKEIDLKNPTSNRKNAGFTDEERSKISELLEAGF 185
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + R + + D + T
Sbjct: 186 IDTYRYFYPDKEGMYSWWSYRFNARANNAGWRIDYFLVSESLKDKLEDAKIHMEVTG--- 242
Query: 108 LSTHCPLTIEYDF 120
S HCP+ + +
Sbjct: 243 -SDHCPVELTINL 254
>gi|301163534|emb|CBW23085.1| exodeoxyribonuclease [Bacteroides fragilis 638R]
Length = 253
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 17/141 (12%), Positives = 36/141 (25%), Gaps = 28/141 (19%)
Query: 3 SQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q E +K+ + K+ ++ GD+N I D +
Sbjct: 117 ERQAFKMVWLEAFQKYVTELRKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+K+ R S ++ + +
Sbjct: 177 WMTRFLSAGFIDSFRTLYPQKQEYTWWSYRFNSRAKNKGW--RIDYCMVSEPVRSLLKEA 234
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
+ + S HCP+ +E
Sbjct: 235 --VILNNAVHSDHCPMALEIS 253
>gi|53713851|ref|YP_099843.1| exodeoxyribonuclease [Bacteroides fragilis YCH46]
gi|60682064|ref|YP_212208.1| exodeoxyribonuclease [Bacteroides fragilis NCTC 9343]
gi|253565813|ref|ZP_04843268.1| exodeoxyribonuclease [Bacteroides sp. 3_2_5]
gi|265764197|ref|ZP_06092765.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_16]
gi|52216716|dbj|BAD49309.1| exodeoxyribonuclease [Bacteroides fragilis YCH46]
gi|60493498|emb|CAH08285.1| exodeoxyribonuclease [Bacteroides fragilis NCTC 9343]
gi|251946092|gb|EES86499.1| exodeoxyribonuclease [Bacteroides sp. 3_2_5]
gi|263256805|gb|EEZ28151.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_16]
Length = 253
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 36/140 (25%), Gaps = 28/140 (20%)
Query: 3 SQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q E +K+ + K+ ++ GD+N I D +
Sbjct: 117 ERQAFKMVWLEAFQKYVTELRKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+K+ R S ++ + +
Sbjct: 177 WMTRFLSAGFIDSFRTLYPQKQEYTWWSYRFNSRAKNKGW--RIDYCMVSEPVRSLLKEA 234
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ + S HCP+ +E
Sbjct: 235 --VILNNAVHSDHCPMALEI 252
>gi|157964825|ref|YP_001499649.1| exodeoxyribonuclease III [Rickettsia massiliae MTU5]
gi|157844601|gb|ABV85102.1| Exodeoxyribonuclease III [Rickettsia massiliae MTU5]
Length = 268
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 27/126 (21%), Gaps = 18/126 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD--GLL 52
+ K +I GDFN I ++ L
Sbjct: 141 NYLSTKKSFDEKTIIGGDFNIAPFDIDVYSPKLLAETTCFTEVEQKKLRTILNSGFEDLY 200
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
K+ R + D + + + + K S H
Sbjct: 201 RLMHPNKQEFSWWDYRAGCFEQNKGMRIDMILGCNNTIDYLENCYMDYNLRTQEKPSDHI 260
Query: 113 PLTIEY 118
P+ +
Sbjct: 261 PVIASF 266
>gi|260904213|ref|ZP_05912535.1| exodeoxyribonuclease III [Brevibacterium linens BL2]
Length = 256
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 30/133 (22%), Gaps = 20/133 (15%)
Query: 7 EWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDF------------------WQKM 46
L ++ V+ GDFN D
Sbjct: 123 RALTADISAQLSETPDKKLVLCGDFNVAPLDEDVWDMAEFDGLTHVSEPERDAFNSLLGA 182
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ +F + + + D + + + + +
Sbjct: 183 GLTEVTRQFTPGPGVYTFWDYQRLAFPKKKGMRIDFELASPSLAEKATGAEIDREERKGK 242
Query: 107 KLSTHCPLTIEYD 119
S H P+ ++Y+
Sbjct: 243 GASDHAPVIVDYE 255
>gi|332187206|ref|ZP_08388946.1| exodeoxyribonuclease III [Sphingomonas sp. S17]
gi|332012906|gb|EGI54971.1| exodeoxyribonuclease III [Sphingomonas sp. S17]
Length = 257
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 33/132 (25%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIG----------------DTDDFWQKMDPD 49
E L A + + +P V+AGD+N N + + +
Sbjct: 125 MERLAARARELLAEEVPAVLAGDYNVIPNDDDTFSVPAMASDALMQPESRQAYRRLLTQG 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ + ++ + L+ +V R K
Sbjct: 185 WTDSVRTRAPKGGVWTFWDYQAGSWQRDAGFRIDHLLLSPQAADRLVDAGVDKSYRGREK 244
Query: 108 LSTHCPLTIEYD 119
S H P +
Sbjct: 245 ASDHAPTWVRLR 256
>gi|46908012|ref|YP_014401.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094151|ref|ZP_00231871.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217964070|ref|YP_002349748.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|226224385|ref|YP_002758492.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes Clip81459]
gi|254826392|ref|ZP_05231393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|254933631|ref|ZP_05266990.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|255521086|ref|ZP_05388323.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-175]
gi|300766428|ref|ZP_07076383.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|46881282|gb|AAT04578.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017476|gb|EAL08289.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217333340|gb|ACK39134.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|225876847|emb|CAS05556.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293585194|gb|EFF97226.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|293595632|gb|EFG03393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|300512852|gb|EFK39944.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|307571362|emb|CAR84541.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|328466425|gb|EGF37573.1| exodeoxyribonuclease III [Listeria monocytogenes 1816]
gi|332312222|gb|EGJ25317.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
Length = 251
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + ++ + P V+ GD N I + + +
Sbjct: 124 DAILEYVK-NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + ++ R + D +V
Sbjct: 183 IDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH----ADVL 238
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E +
Sbjct: 239 GSDHCPVELELNL 251
>gi|290893090|ref|ZP_06556079.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|290557450|gb|EFD90975.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
Length = 251
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + ++ + P V+ GD N I + + +
Sbjct: 124 DAILEYVK-NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + ++ R + D +V
Sbjct: 183 IDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH----ADVL 238
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E +
Sbjct: 239 GSDHCPVELELNL 251
>gi|254372791|ref|ZP_04988280.1| exodeoxyribonuclease III [Francisella tularensis subsp. novicida
GA99-3549]
gi|151570518|gb|EDN36172.1| exodeoxyribonuclease III [Francisella novicida GA99-3549]
Length = 262
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 22/132 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------------------WQKMDPD 49
K+ ++ ++G F++ GDFN I + + +
Sbjct: 132 KEILKEQAESGRDFIVCGDFNIVHKEIDIKNWKSNYGKTSGVLPEEQAWLDHIFDDLGWV 191
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R ++ + + + +SD R + S
Sbjct: 192 DTFRVINHQPLQYTWWSNRGQARANNVGW--RIDYHISTPAIKDKVVPESDYIYRENWFS 249
Query: 110 THCPLTIEYDFE 121
H PLTI YDFE
Sbjct: 250 DHAPLTISYDFE 261
>gi|16803822|ref|NP_465307.1| hypothetical protein lmo1782 [Listeria monocytogenes EGD-e]
gi|16411236|emb|CAC99860.1| lmo1782 [Listeria monocytogenes EGD-e]
Length = 251
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + ++ + P V+ GD N I + + +
Sbjct: 124 DAILEYVK-NLDNTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + ++ R + D +V
Sbjct: 183 IDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH----ADVL 238
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E +
Sbjct: 239 GSDHCPVELELNL 251
>gi|229816298|ref|ZP_04446607.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
gi|229808149|gb|EEP43942.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
Length = 280
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 36/134 (26%), Gaps = 24/134 (17%)
Query: 7 EWLKKWADQKIKT-GIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDG 50
+ + + G P V GDFN N I + + ++ G
Sbjct: 151 DAYRAFLRSLEDETGKPVVTCGDFNVAHNEIDLKNPKSNRGNAGFSDEERAKFGELLDAG 210
Query: 51 LLIRFPQE----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
F + + R + + D + + +
Sbjct: 211 YTDTFRAANPNLEGAYSWWSYRFNARKNNAGWRIDYFLVSDAIADRVRACGI----RNDI 266
Query: 107 KLSTHCPLTIEYDF 120
S HCP+T+E +
Sbjct: 267 FGSDHCPVTLEIEL 280
>gi|146329467|ref|YP_001209345.1| exodeoxyribonuclease III [Dichelobacter nodosus VCS1703A]
gi|146232937|gb|ABQ13915.1| exodeoxyribonuclease III [Dichelobacter nodosus VCS1703A]
Length = 260
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 31/131 (23%), Gaps = 20/131 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
+ ++++ V+ GDFN D +
Sbjct: 125 QHVQRYIAHLCAHYPHLVVIGDFNIAPTDRDVFDPRQFQEKLLCSDAERRALHALFALGL 184
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
EK R + LI + +++ D + +
Sbjct: 185 RDSFREMHPEKTQFSWWDYRYNAWQRNLG--LRIDLVLISSKLRLIAADIDTQTRQNERP 242
Query: 109 STHCPLTIEYD 119
S H + + +
Sbjct: 243 SDHSVVWAQVE 253
>gi|167856041|ref|ZP_02478785.1| exodeoxyribonuclease III [Haemophilus parasuis 29755]
gi|219870568|ref|YP_002474943.1| exonuclease III [Haemophilus parasuis SH0165]
gi|167852836|gb|EDS24106.1| exodeoxyribonuclease III [Haemophilus parasuis 29755]
gi|219690772|gb|ACL31995.1| exonuclease III [Haemophilus parasuis SH0165]
Length = 267
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 39/135 (28%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKES----- 61
L+++ + ++K P VI GD N + + ++ DG P+E+E
Sbjct: 132 LQRYLETELKPENPIVIMGDMNISPTDLDIGLGEVNRKRWLRDGKCSFLPEEREWLGRLH 191
Query: 62 ------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D + V
Sbjct: 192 GYGLVDTFRAMNPTAEDKFSWFDYRSKGFDDNRGLRIDLVLASTPLAERCVETGIDLEIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 252 AMDKPSDHAPVWAVF 266
>gi|325293099|ref|YP_004278963.1| exodeoxyribonuclease III [Agrobacterium sp. H13-3]
gi|325060952|gb|ADY64643.1| exodeoxyribonuclease III [Agrobacterium sp. H13-3]
Length = 265
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 41/137 (29%), Gaps = 18/137 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
E L+++A+ ++ P ++AGD+N D +++++ G
Sbjct: 129 MERLRRFAEDRLALEEPLILAGDYNVIPEPFDCHDPRVWAGDALFLPKTRSAFRRLENLG 188
Query: 51 LLIRFPQEKESTC-NVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ ++ + ++ + S K
Sbjct: 189 FTDAARATTDEPGLYSFWDYQAGAWPKNNGIRIDHLMLSAEAADRLESVSIEKHVRAWEK 248
Query: 108 LSTHCPLTIEYDFEKGN 124
S H P+ ++F N
Sbjct: 249 PSDHVPVCGYFNFTPIN 265
>gi|218530191|ref|YP_002421007.1| exodeoxyribonuclease III Xth [Methylobacterium chloromethanicum
CM4]
gi|218522494|gb|ACK83079.1| exodeoxyribonuclease III Xth [Methylobacterium chloromethanicum
CM4]
Length = 264
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
L+ A + T V+AGDFN D ++ + +G
Sbjct: 131 MARLRAHARALMTTEEALVLAGDFNVIPEPEDAADPSVWTQDALFLPEPRRAFRALLAEG 190
Query: 51 LLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ S + I D+ + +VS K
Sbjct: 191 FTDGLRACEPSAGLYTFWDYQAGCWPRNQGIRIDHLLLSPQAADRLVSASVQRHLRGLEK 250
Query: 108 LSTHCPLTIEYD 119
S H P+T+E
Sbjct: 251 PSDHVPVTVELS 262
>gi|77465425|ref|YP_354928.1| exodeoxyribonuclease III [Rhodobacter sphaeroides 2.4.1]
gi|77389843|gb|ABA81027.1| Exodeoxyribonuclease III [Rhodobacter sphaeroides 2.4.1]
Length = 255
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 18/129 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLL- 52
L A++ ++ +P V+AGDFN + + ++ G
Sbjct: 127 LLNHAEEVLRHDVPVVLAGDFNVMPTDLDVHRPERWREDALCRPEVRAAFARLLAQGWTD 186
Query: 53 --IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
E + + D+ + K S
Sbjct: 187 SIRHLYPEDRIYTFWDYLRNAWERDAGLRLDHLLLSPSLLTRLKGAGVDRHVRGWEKASD 246
Query: 111 HCPLTIEYD 119
H P+ I D
Sbjct: 247 HAPVWIAID 255
>gi|315122848|ref|YP_004063337.1| exodeoxyribonuclease III protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496250|gb|ADR52849.1| exodeoxyribonuclease III protein [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 265
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 34/130 (26%), Gaps = 18/130 (13%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFWQKMDPDGLL 52
++A Q+++ + AGD+N D Q M +
Sbjct: 136 QFASQRLELEEALIFAGDYNIVPQPRDCHDSIMLQNDACFTLEVRQAFQKLQNMGFTDAI 195
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ S + D+ + + + S K S H
Sbjct: 196 RATNDAHHIYSFWDYFSDSWRKNKGMRIDHVMLSPEATTFLHSAYIDKKPRGCVKPSDHT 255
Query: 113 PLTIEYDFEK 122
P+ + D +
Sbjct: 256 PVIVALDIPE 265
>gi|208779224|ref|ZP_03246570.1| exodeoxyribonuclease III [Francisella novicida FTG]
gi|208745024|gb|EDZ91322.1| exodeoxyribonuclease III [Francisella novicida FTG]
Length = 262
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 22/132 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------------------WQKMDPD 49
K+ +++++G F++ GDFN I + + +
Sbjct: 132 KEILKEQVESGRDFIVCGDFNIVHKEIDIKNWKSNYGKTSGVLPEEQAWLDHIFDDLGWV 191
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R ++ + + + +SD R + S
Sbjct: 192 DTFRVINHQPLQYTWWSNRGQARANNVGW--RIDYHISTPAIKDKVVPESDYIYRENWFS 249
Query: 110 THCPLTIEYDFE 121
H PLTI YDFE
Sbjct: 250 DHAPLTISYDFE 261
>gi|330996654|ref|ZP_08320532.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
gi|329572726|gb|EGG54359.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
Length = 250
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 33/131 (25%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + Q + T P ++ GD N I + + +
Sbjct: 124 EAFRAYLLQ-LDTRKPVIVCGDLNVAHREIDLKNPKSNRKNAGFTDEEREKFGILLDSGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++E R K+ D + S
Sbjct: 183 TDTFRFFYPDREGIYSWWSYRFKAREKNAGWRIDYFLVSKRLEAQLKSATIHTEIFG--- 239
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 240 -SDHCPVEVDL 249
>gi|262277234|ref|ZP_06055027.1| exodeoxyribonuclease III [alpha proteobacterium HIMB114]
gi|262224337|gb|EEY74796.1| exodeoxyribonuclease III [alpha proteobacterium HIMB114]
Length = 263
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 35/133 (26%), Gaps = 21/133 (15%)
Query: 7 EWLKKWA---DQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQK 45
+WL + ++I +I GDFN NS +
Sbjct: 131 KWLNNFINFIKKEIHNYDGIIIGGDFNIIPNSNDVGNPEDWGNDALYRLEIRKEFRKILN 190
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ F E + S + D+ I + +
Sbjct: 191 LGFKDSFRLFNTEDKQYTFWDYTQGSWQRNKGLRIDHFLITDSICSKIKNVEIDKFTRGL 250
Query: 106 SKLSTHCPLTIEY 118
+K S H P+ + +
Sbjct: 251 NKPSDHSPIRVNF 263
>gi|254854529|ref|ZP_05243877.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
gi|258607929|gb|EEW20537.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
Length = 251
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + ++ + P V+ GD N I + + +
Sbjct: 124 DAILEYVK-NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + ++ R + D +V
Sbjct: 183 IDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH----ADVL 238
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E +
Sbjct: 239 GSDHCPVELELNL 251
>gi|295101467|emb|CBK99012.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii L2-6]
Length = 250
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 33/132 (25%), Gaps = 23/132 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P ++ GD N I + +M
Sbjct: 124 DAFRAYLLE-LDAKKPVILCGDLNVAHQEIDIKNAKTNRMSAGFTDQERAKMTELLAVGF 182
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + D + I + + +
Sbjct: 183 TDSFRAIHPDEVKYSWWSYRFHAREKNAGWRIDYFIVSNRIADKIKAAEIHNEVFG---- 238
Query: 109 STHCPLTIEYDF 120
S HCP+ ++ D
Sbjct: 239 SDHCPVELDIDL 250
>gi|300777930|ref|ZP_07087788.1| possible exodeoxyribonuclease III [Chryseobacterium gleum ATCC
35910]
gi|300503440|gb|EFK34580.1| possible exodeoxyribonuclease III [Chryseobacterium gleum ATCC
35910]
Length = 259
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 37/133 (27%), Gaps = 21/133 (15%)
Query: 8 WLKKW---ADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKM 46
WLK++ DQ IK +P ++ GDFN I QK
Sbjct: 124 WLKRFKKRTDQLIKMELPAILIGDFNIIPEPIDVHKPERWENDALYRVEVRKAYKDLQKK 183
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ ++ K+ I D+ + S
Sbjct: 184 GWLDSIRSLYPGEKIYTFWDYLYKAYDRNAGIRLDHILLSPYLQSRLQSGGVDRQVRGWE 243
Query: 107 KLSTHCPLTIEYD 119
K S H P+ IE
Sbjct: 244 KSSDHAPVWIELS 256
>gi|15965402|ref|NP_385755.1| exodeoxyribonuclease III protein [Sinorhizobium meliloti 1021]
gi|307308792|ref|ZP_07588488.1| exodeoxyribonuclease III Xth [Sinorhizobium meliloti BL225C]
gi|307317265|ref|ZP_07596706.1| exodeoxyribonuclease III Xth [Sinorhizobium meliloti AK83]
gi|15074583|emb|CAC46228.1| Probable exodeoxyribonuclease III [Sinorhizobium meliloti 1021]
gi|306897353|gb|EFN28098.1| exodeoxyribonuclease III Xth [Sinorhizobium meliloti AK83]
gi|306900798|gb|EFN31409.1| exodeoxyribonuclease III Xth [Sinorhizobium meliloti BL225C]
Length = 264
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 33/130 (25%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------DDFWQKMDPDGLLIRF----- 55
L +A + ++ +P ++AGD+N + D ++ D
Sbjct: 127 RLTAYAAELLELDVPVILAGDYNVMPTELDVYKPERWVNDALFRIEVRDAYHRLLEQGWT 186
Query: 56 ------PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + + D+ + + + S
Sbjct: 187 DALRQLHPGERVYTFWDYFRNAFARDAGLRIDHLLLSPHVTLRLSAAGVDRHVRGWEHTS 246
Query: 110 THCPLTIEYD 119
H P IE
Sbjct: 247 DHAPAWIELS 256
>gi|332161914|ref|YP_004298491.1| exonuclease III [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|318605567|emb|CBY27065.1| exodeoxyribonuclease III [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325666144|gb|ADZ42788.1| exonuclease III [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|330859743|emb|CBX70078.1| exodeoxyribonuclease III [Yersinia enterocolitica W22703]
Length = 268
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 14/135 (10%), Positives = 33/135 (24%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+++ +Q++ +I GD N + + Q
Sbjct: 132 LQQYLEQQLSADAQVLIMGDLNISPTDLDIGIGEDSRKRWLRTGKCSFLPEERAWLERLQ 191
Query: 45 KMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ R++ + + D + ++
Sbjct: 192 NWGLVDTFRAANPDCNDQFSWFDYRSRGFDENRGLRIDLLLASRPLAARCIATGIDYDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 SMEKPSDHAPVWSEF 266
>gi|213961670|ref|ZP_03389936.1| exodeoxyribonuclease III [Capnocytophaga sputigena Capno]
gi|213955459|gb|EEB66775.1| exodeoxyribonuclease III [Capnocytophaga sputigena Capno]
Length = 254
Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 32/128 (25%), Gaps = 22/128 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+K+ D+ +T VI GD+N +I D
Sbjct: 130 QKYIDKLKQTVPNLVICGDYNICHEAIDIHDPVRNATVSGFLPVEREWLDKFMKSGFIDS 189
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F +E R + + D + K S H
Sbjct: 190 FRYFHKEPHQYSWWSYRANARNNNKGWRIDYHLVSTPLENRMERALILPEA----KHSDH 245
Query: 112 CPLTIEYD 119
CP+ +E
Sbjct: 246 CPIVLEIR 253
>gi|86357443|ref|YP_469335.1| exodeoxyribonuclease III protein [Rhizobium etli CFN 42]
gi|86281545|gb|ABC90608.1| exodeoxyribonuclease III protein [Rhizobium etli CFN 42]
Length = 263
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
E L+ +A +++ V+AGD+N D +++++ G
Sbjct: 129 MERLRSFAAERLAYEEMLVLAGDYNVIPEPHDCFDPRAWESDALFLPQTRRAFRRLENLG 188
Query: 51 LLIRFPQEKESTC-NVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
L ++T ++ + L+ + S K
Sbjct: 189 LTDAVRATTDATRLYSFWDYQAGAWPKNNGIRIDHLLLSPEAADRMTSAAIEKHVRAWEK 248
Query: 108 LSTHCPLTIEYDF 120
S H P+ +DF
Sbjct: 249 PSDHVPVIAYFDF 261
>gi|218460834|ref|ZP_03500925.1| exodeoxyribonuclease III protein [Rhizobium etli Kim 5]
Length = 164
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 37/136 (27%), Gaps = 20/136 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
L +A + ++ +P ++AGDFN I + ++
Sbjct: 27 RRLHAYAAELLEIEVPSILAGDFNVMPTEIDVYKPE-RWLNDALFRPEVRKAYAQLVAQG 85
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ ++ S + D+ + + S
Sbjct: 86 WTDAVRHLHPDERIYTFWKYWRNSFERDAGLRIDHFLLSPTVAPWLRSASVRRKPRGWEH 145
Query: 108 LSTHCPLTIEYDFEKG 123
S H P+ IE D +
Sbjct: 146 TSDHAPVMIELDTPEA 161
>gi|57239110|ref|YP_180246.1| exodeoxyribonuclease III [Ehrlichia ruminantium str. Welgevonden]
gi|58579057|ref|YP_197269.1| exodeoxyribonuclease III [Ehrlichia ruminantium str. Welgevonden]
gi|57161189|emb|CAH58103.1| putative exodeoxyribonuclease [Ehrlichia ruminantium str.
Welgevonden]
gi|58417683|emb|CAI26887.1| Exodeoxyribonuclease III [Ehrlichia ruminantium str. Welgevonden]
Length = 278
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGL 51
+ LK++ +K ++ GD+N I + ++ + G
Sbjct: 147 DQLKEYMSFLLKKEEICILGGDYNVAPYPIDMYSYEIMNGKLCCHQFEREKFRSIINTGF 206
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+K+ + S + + D + S D +
Sbjct: 207 FDAFRLLNNDKKQFTWWNYKFGSWQENKGLRIDMLLLSPQAMDKVSSCVVHDGLRGLNVP 266
Query: 109 STHCPLTIEYDF 120
S H P+ + +
Sbjct: 267 SDHVPVVCDLNL 278
>gi|118497430|ref|YP_898480.1| exodeoxyribonuclease III [Francisella tularensis subsp. novicida
U112]
gi|195536121|ref|ZP_03079128.1| exodeoxyribonuclease III [Francisella tularensis subsp. novicida
FTE]
gi|118423336|gb|ABK89726.1| exodeoxyribonuclease III [Francisella novicida U112]
gi|194372598|gb|EDX27309.1| exodeoxyribonuclease III [Francisella tularensis subsp. novicida
FTE]
Length = 262
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 22/132 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------------------WQKMDPD 49
K+ +++++G F++ GDFN I + + +
Sbjct: 132 KEILKEQVESGRDFIVCGDFNIVHKEIDIKNWKSNYGKTSGVLPEEQAWLDHIFDDLGWV 191
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R ++ + + + +SD R + S
Sbjct: 192 DTFRVINHQPLQYTWWSNRGQARANNVGW--RIDYHISTPAIKDKVVPESDYIYRENWFS 249
Query: 110 THCPLTIEYDFE 121
H PLTI YDFE
Sbjct: 250 DHAPLTISYDFE 261
>gi|163814023|ref|ZP_02205416.1| hypothetical protein COPEUT_00176 [Coprococcus eutactus ATCC 27759]
gi|158450717|gb|EDP27712.1| hypothetical protein COPEUT_00176 [Coprococcus eutactus ATCC 27759]
Length = 257
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 35/130 (26%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + + ++ P ++ GD N N I + + +
Sbjct: 133 RAYLKK-LEENKPVIVCGDMNVAHNEIDLKNPKTNRKNAGFTDEEREKMTVLLDDGFIDT 191
Query: 52 LIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F ++E+ R K+ D ++ S
Sbjct: 192 FRYFYPDQENIYSWWSYRFKAREKNAGWRIDYFLTSESLKDKLIDAKIHTDIMG----SD 247
Query: 111 HCPLTIEYDF 120
HCP+ ++ D
Sbjct: 248 HCPVELDIDM 257
>gi|327480794|gb|AEA84104.1| exonuclease III [Pseudomonas stutzeri DSM 4166]
Length = 270
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 34/138 (24%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKES----- 61
L+ +Q+ + GDFN + ++ G P+E+E
Sbjct: 133 LQALLEQRFSPDESLALMGDFNISPQDCDIGIGEVNAKRWLRTGKCSFLPEEREWLERIK 192
Query: 62 ------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDL 101
R++ D L ++
Sbjct: 193 GWGLQDSFRTLNPKVVDRFSWFDYRSRGFEDEPRRGLRIDYILTTHALHERVTDCGVDYD 252
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S HCP+ IE
Sbjct: 253 IRAMEKPSDHCPVWIELR 270
>gi|47097522|ref|ZP_00235061.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|224503787|ref|ZP_03672094.1| exodeoxyribonuclease III [Listeria monocytogenes FSL R2-561]
gi|254832537|ref|ZP_05237192.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes 10403S]
gi|254901191|ref|ZP_05261115.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes J0161]
gi|254914076|ref|ZP_05264088.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|254938390|ref|ZP_05270087.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|47014105|gb|EAL05099.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|258611002|gb|EEW23610.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|293592096|gb|EFG00431.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
Length = 251
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + ++ + P V+ GD N I + + +
Sbjct: 124 DAILEYVK-NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + ++ R + D +V
Sbjct: 183 IDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH----ADVL 238
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E +
Sbjct: 239 GSDHCPVELELNL 251
>gi|312843088|gb|ADR02759.1| XthA [Treponema pallidum subsp. pertenue]
gi|313505178|gb|ADR64329.1| exodeoxyribonuclease III [Treponema pallidum subsp. pertenue]
gi|313505198|gb|ADR64348.1| exodeoxyribonuclease III [Treponema pallidum subsp. pertenue str.
Gauthier]
gi|313505297|gb|ADR64434.1| exodeoxyribonuclease III [Treponema pallidum]
Length = 264
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 22/131 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMD 47
+ + D++ G ++ GD+N I + +
Sbjct: 136 CAAFRAFCDEERTAGQHVILCGDYNIAHKEIDLAHPQENEGNPGFLPQERAWMDTFTEAG 195
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F E + R ++ +D +F ++ S
Sbjct: 196 YADSFRAFCTEGQQYTWWSYRARARARNIGW--RIDYQCVDQAF--LARVTSSQILSEVT 251
Query: 108 LSTHCPLTIEY 118
S HCP+ + Y
Sbjct: 252 GSDHCPVCLTY 262
>gi|299141239|ref|ZP_07034376.1| exodeoxyribonuclease III [Prevotella oris C735]
gi|298577199|gb|EFI49068.1| exodeoxyribonuclease III [Prevotella oris C735]
Length = 250
Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 28/123 (22%), Gaps = 22/123 (17%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
++ P ++ GD N I + + +
Sbjct: 132 RLDEQKPVIVCGDLNVAHQEIDLKNPKSNRRNAGFTDEEREKMTQLLSHGFTDTFRTLYP 191
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E+ + R ++ D + S HCP+ ++
Sbjct: 192 EQVTYSWWSYRFRAREKNAGWRIDYFLISDRLRPQLKDASIHTEIFG----SDHCPIEVD 247
Query: 118 YDF 120
+
Sbjct: 248 LEL 250
>gi|301156424|emb|CBW15895.1| exonuclease III [Haemophilus parainfluenzae T3T1]
Length = 267
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKEST---- 62
L+++ +Q P +I GD N + + D+ ++ G P+E+E
Sbjct: 132 LQRYLEQDHDKANPVLIMGDMNISPSDLDIGIGDENRKRWLRTGKCSFLPEEREWYQRLY 191
Query: 63 -------------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ + V +
Sbjct: 192 DYGLEDTFRKLNPTVNDKFSWFDYRSKGFDDNRGLRIDHILVNRQLAERCVDVGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEF 266
>gi|118589109|ref|ZP_01546516.1| exodeoxyribonuclease III [Stappia aggregata IAM 12614]
gi|118438438|gb|EAV45072.1| exodeoxyribonuclease III [Stappia aggregata IAM 12614]
Length = 260
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ L A ++++ PF++ GD+N + + + F
Sbjct: 128 MDRLITHAQKRLEEETPFLLLGDYNVIPDPVDAKNPQNWLEDALFQPESRQRFRALTHLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ ++ + L+ K
Sbjct: 188 LTEAVRSCTEAPETFTFWDYQAGAWQKNNGIRIDHILMSPQATDRFSGCGIDKHVRGWEK 247
Query: 108 LSTHCPLTIEY 118
S H P+ ++
Sbjct: 248 PSDHVPVWVKL 258
>gi|83595025|ref|YP_428777.1| exodeoxyribonuclease III xth [Rhodospirillum rubrum ATCC 11170]
gi|83577939|gb|ABC24490.1| Exodeoxyribonuclease III xth [Rhodospirillum rubrum ATCC 11170]
Length = 249
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 35/134 (26%), Gaps = 21/134 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKM 46
+ L W D+ + +P ++ GDFN D
Sbjct: 111 DALTDWFDRTLDPDMPAMVVGDFNVAPLETDVWDHRKMRGVVSHTPVEVAKLGALQASGP 170
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSL-DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
D + P E++ R K D+ + + D
Sbjct: 171 WIDAMRRFVPPEEKLFTWWSYRAKDWRLTNRGRRLDHIWVTPALVDRLRGLEVMDDTRDW 230
Query: 106 SKLSTHCPLTIEYD 119
+ S H P+ + D
Sbjct: 231 TPPSDHVPVIVHID 244
>gi|119953317|ref|YP_945526.1| exodeoxyribonuclease III [Borrelia turicatae 91E135]
gi|119862088|gb|AAX17856.1| exodeoxyribonuclease III [Borrelia turicatae 91E135]
Length = 252
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 22/128 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------G 50
L+ A+ + +G VI GDFN I + +
Sbjct: 128 LESIANMFVTSGKNIVICGDFNIAHTEIDLANPKTSRESAGFYIEETTWMDNFLNGGYVD 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + + ++ F+++ F + L R S
Sbjct: 188 TFRMFNMDPGNYTWWDYKTRARERNIGW--RIDYFIVNEFFKSK--VKDALILREVMGSD 243
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 244 HCPVFLEL 251
>gi|294012654|ref|YP_003546114.1| exodeoxyribonuclease III [Sphingobium japonicum UT26S]
gi|292675984|dbj|BAI97502.1| exodeoxyribonuclease III [Sphingobium japonicum UT26S]
Length = 256
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 32/132 (24%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------QKMDPD 49
+ L+ A Q +P ++AGD+N + +
Sbjct: 125 MKRLRDRAAQIWAEEVPAILAGDYNVIPRDRDVYSVKAMAEDALMQPESRAAYRRLLGDG 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ + + + L+ + ++ R K
Sbjct: 185 WTDAIASRHPAGRVWTYWDYQMNAWPRDAGFRIDHLLLSPAAADRLIDAQVDKDFRGREK 244
Query: 108 LSTHCPLTIEYD 119
S H P +E
Sbjct: 245 ASDHAPTWVELS 256
>gi|111221323|ref|YP_712117.1| putative exodeoxyribonuclease III [Frankia alni ACN14a]
gi|111148855|emb|CAJ60533.1| Putative exodeoxyribonuclease III [Frankia alni ACN14a]
Length = 298
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 32/130 (24%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPD 49
L+ ++ G P + GDFN D
Sbjct: 131 ALRDVVAAEVTRG-PLMTLGDFNIAPTDADVWDVAQFEGATHVTPAERAALGELVDAGLV 189
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+L + R F + D D + + + + + S
Sbjct: 190 DVLRTRWPDDVVYTYWDYRQLCFPKNFGMRIDLTLASADVADRVRAVWVDRAARKGTGTS 249
Query: 110 THCPLTIEYD 119
H P+ ++ D
Sbjct: 250 DHAPVIVDLD 259
>gi|34581351|ref|ZP_00142831.1| exodeoxyribonuclease III [Rickettsia sibirica 246]
gi|28262736|gb|EAA26240.1| exodeoxyribonuclease III [Rickettsia sibirica 246]
Length = 260
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 27/126 (21%), Gaps = 18/126 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD--GLL 52
+ K +I GDFN I ++ L
Sbjct: 133 NYLSTKKSFDEKTIIGGDFNIAPFDIDVYSPKLLAETTCFTEVEQKKLRTILNSGFEDLY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
K+ R + D + + + + K S H
Sbjct: 193 RLMHPSKQEFSWWDYRAGCFEQNKGMRIDMILGCNNTIDYLENCYMDYNLRAQEKPSDHI 252
Query: 113 PLTIEY 118
P+ +
Sbjct: 253 PVIASF 258
>gi|58617116|ref|YP_196315.1| exodeoxyribonuclease III [Ehrlichia ruminantium str. Gardel]
gi|58416728|emb|CAI27841.1| Exodeoxyribonuclease III [Ehrlichia ruminantium str. Gardel]
Length = 278
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 37/132 (28%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGL 51
+ LK++ +K ++ GD+N I + ++ + G
Sbjct: 147 DQLKEYMSFLLKKEEICILGGDYNVAPYPIDMYSYEIMNGKLCCHQFEREKFRSIINTGF 206
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+K+ + S + + D + S D +
Sbjct: 207 FDAFRLLNDDKKQFTWWNYKFGSWQENKGLRIDMLLLSPQAMDKVSSCVVHDELRGLNVP 266
Query: 109 STHCPLTIEYDF 120
S H P+ + +
Sbjct: 267 SDHVPVVCDLNL 278
>gi|328473849|gb|EGF44679.1| exodeoxyribonuclease III [Listeria monocytogenes 220]
Length = 225
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + ++ + P V+ GD N I + + +
Sbjct: 98 DAILEYVK-NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGF 156
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + ++ R + D +V
Sbjct: 157 IDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH----ADVL 212
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E +
Sbjct: 213 GSDHCPVELELNL 225
>gi|307545625|ref|YP_003898104.1| exonuclease III [Halomonas elongata DSM 2581]
gi|307217649|emb|CBV42919.1| exonuclease III [Halomonas elongata DSM 2581]
Length = 277
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 29/146 (19%), Gaps = 27/146 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ L ++ + I GDFN I
Sbjct: 131 RRFYAQLSSLLKEQHRPDERLAIMGDFNISPADIDIGIGESNRKRWLREGKTSFQPEERE 190
Query: 39 TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
D + E + R+K L + D
Sbjct: 191 WLDAIKAWGLSDSYRDRYPEVDDRFSWFDYRSKGFDRDPKRGLRIDYILTTAPLATHIAD 250
Query: 98 --QSDLDTRRSKLSTHCPLTIEYDFE 121
K S H P+ E+D
Sbjct: 251 AGIDYDLRGMEKPSDHAPVWTEFDLN 276
>gi|150376441|ref|YP_001313037.1| exodeoxyribonuclease III Xth [Sinorhizobium medicae WSM419]
gi|150030988|gb|ABR63104.1| exodeoxyribonuclease III Xth [Sinorhizobium medicae WSM419]
Length = 257
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGL 51
+ L A ++ +P ++AGD+N ++ + G
Sbjct: 126 QRLNLHAAALLEARVPVLLAGDYNVVPEPRDIYPTRSYDGNALVQPESRAAFKSLVEQGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
L + + + R + D+ +
Sbjct: 186 LDALRKVHPQAQLFTFWDYRRNRWQRDAGLRLDHILLSGKLKRRLTGAGIDREIRGLEGA 245
Query: 109 STHCPLTIEYD 119
S H P+ I
Sbjct: 246 SDHAPVWITLR 256
>gi|326317822|ref|YP_004235494.1| exodeoxyribonuclease III Xth [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323374658|gb|ADX46927.1| exodeoxyribonuclease III Xth [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 302
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 29/129 (22%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLL 52
L + AD P V+AGDFN ++ + G
Sbjct: 127 RLARRADVLRSRPEPVVLAGDFNIIPTERDVYKPDAWVEDALFRTEVRDAFRALVDSGWT 186
Query: 53 IRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + + D+ + + R++ S
Sbjct: 187 DALRAVHPGETVYTFWDYLRQRFQRNAGLRIDHLLLNPAAARRLQDAGVDRDVRGRARPS 246
Query: 110 THCPLTIEY 118
H P
Sbjct: 247 DHAPAWAVL 255
>gi|255009509|ref|ZP_05281635.1| exodeoxyribonuclease [Bacteroides fragilis 3_1_12]
gi|313147282|ref|ZP_07809475.1| exodeoxyribonuclease [Bacteroides fragilis 3_1_12]
gi|313136049|gb|EFR53409.1| exodeoxyribonuclease [Bacteroides fragilis 3_1_12]
Length = 253
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 36/139 (25%), Gaps = 28/139 (20%)
Query: 3 SQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q E +K+ + K+ ++ GD+N I D +
Sbjct: 117 ERQAFKMVWLEAFQKYVTELRKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
EK+ R S ++ + +
Sbjct: 177 WMTRFLSAGFIDSFRTLYPEKQEYTWWSYRFNSRAKNKGW--RIDYCMVSEPVRSLLKEA 234
Query: 99 SDLDTRRSKLSTHCPLTIE 117
+ + S HCP+ +E
Sbjct: 235 --VILNNAVHSDHCPMALE 251
>gi|73670688|ref|YP_306703.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina barkeri
str. Fusaro]
gi|72397850|gb|AAZ72123.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina barkeri
str. Fusaro]
Length = 258
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 29/133 (21%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E +A+ G VI GD N + +
Sbjct: 131 EAFLDYANSLKAEGKRLVICGDVNTAHKELDLARPKQNETISGFLPEERAWMDKFLAAGY 190
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS-K 107
F E + R + F + +
Sbjct: 191 LDTFRMFNPEGGNYSWWSMRTGARKRNVGW--RLDYFFVSEKLRD---NVKSAPIYSEIM 245
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E +F
Sbjct: 246 GSDHCPVGLELEF 258
>gi|237714559|ref|ZP_04545040.1| exodeoxyribonuclease [Bacteroides sp. D1]
gi|262406425|ref|ZP_06082974.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_22]
gi|294643303|ref|ZP_06721129.1| exodeoxyribonuclease III [Bacteroides ovatus SD CC 2a]
gi|229445328|gb|EEO51119.1| exodeoxyribonuclease [Bacteroides sp. D1]
gi|262355128|gb|EEZ04219.1| exodeoxyribonuclease III [Bacteroides sp. 2_1_22]
gi|292641426|gb|EFF59618.1| exodeoxyribonuclease III [Bacteroides ovatus SD CC 2a]
gi|295083963|emb|CBK65486.1| exodeoxyribonuclease III [Bacteroides xylanisolvens XB1A]
Length = 254
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 34/140 (24%), Gaps = 28/140 (20%)
Query: 3 SQQG---EWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q WL+ + + K+ ++ GD+N I D +
Sbjct: 118 ERQAFKMVWLEDFQKYVMELQKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEERE 177
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
EK+ R S ++ +
Sbjct: 178 WMTRFLSAGYVDSFRTLCPEKQEYTWWSYRFNSRAKNKGW--RIDYCMVSEPVRPLLKRA 235
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ S HCP+ +E
Sbjct: 236 --YILNEAVHSDHCPMALEI 253
>gi|118617059|ref|YP_905391.1| exodeoxyribonuclease III protein XthA [Mycobacterium ulcerans
Agy99]
gi|118569169|gb|ABL03920.1| exodeoxyribonuclease III protein XthA [Mycobacterium ulcerans
Agy99]
Length = 264
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 30/134 (22%), Gaps = 24/134 (17%)
Query: 8 WLKK----WADQKIKTGIPFVIAGDFNRKINSIGDTD------------DFWQKMDP--- 48
L+ W G P +AGDFN + + +
Sbjct: 128 ALRDTAQCWLK--NDPGAPIALAGDFNIAPTDEDVWNTEFFTGATRVSEPERKAFNAIVD 185
Query: 49 ---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
L+ F + D + +V + +
Sbjct: 186 AQFTDLVRPFTPGPGVYTYWYYTQLRFPKKQGMRIDFILGSPALAGRVVDAQIVRDERKG 245
Query: 106 SKLSTHCPLTIEYD 119
S H P+ ++
Sbjct: 246 KAPSDHAPVFVDLR 259
>gi|163793122|ref|ZP_02187098.1| Exonuclease III [alpha proteobacterium BAL199]
gi|159181768|gb|EDP66280.1| Exonuclease III [alpha proteobacterium BAL199]
Length = 259
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 31/132 (23%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMD 47
+ LK A + ++ V+ GD+N D +
Sbjct: 125 MKRLKARATELLRAEGAVVLGGDYNVIPTDDDVHDPAAWAGDALCRPETRAAFREILWLG 184
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
Q + + + D+ + + + + K
Sbjct: 185 YTDAFRALDQTVHKYTFWDYQGGAWQRDEGVRIDHLLLSPQAADRLTASGIDTAPRAKPK 244
Query: 108 LSTHCPLTIEYD 119
S H P+ E
Sbjct: 245 ASDHTPVWCEIR 256
>gi|59713463|ref|YP_206238.1| hypothetical protein VF_A0280 [Vibrio fischeri ES114]
gi|59481711|gb|AAW87350.1| hypothetical protein VF_A0280 [Vibrio fischeri ES114]
Length = 323
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 3/121 (2%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L QQ + + +W + + ++I GDFN + K + + ++ ++
Sbjct: 202 LKQQTDEVIEWINSREANNEEYLILGDFNHTLAHPRSWLWKNIKNNTSDTPLLLTEDTKA 261
Query: 62 TC---NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
C + + + + + SF + + D ++ +LS HCP+ E
Sbjct: 262 RCTVKQWKRDWPKYTTFTRLIDHGITNISNRSFQVTQQQFIESDVKKYQLSDHCPILFEM 321
Query: 119 D 119
+
Sbjct: 322 N 322
>gi|239814966|ref|YP_002943876.1| exodeoxyribonuclease III Xth [Variovorax paradoxus S110]
gi|239801543|gb|ACS18610.1| exodeoxyribonuclease III Xth [Variovorax paradoxus S110]
Length = 260
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 32/135 (23%), Gaps = 18/135 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
E L A G+P V+AGDFN + + ++ G
Sbjct: 126 ERLNAHARLLYGCGMPAVLAGDFNVVPTDADIYNPASWQDDALLQPESRAAFARLLKQGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + D+ + + + + R
Sbjct: 186 TDAIRTRHPREAIYTYWDYWRNRWPRNAGLRIDHLLLNRELAPFLADANVDREVRGRPGA 245
Query: 109 STHCPLTIEYDFEKG 123
S H P D G
Sbjct: 246 SDHAPAWALLDLPAG 260
>gi|197337596|ref|YP_002157871.1| metal-dependent hydrolase [Vibrio fischeri MJ11]
gi|197314848|gb|ACH64297.1| metal-dependent hydrolase [Vibrio fischeri MJ11]
Length = 323
Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 3/121 (2%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L QQ + + +W + + ++I GDFN + K + + ++ ++
Sbjct: 202 LKQQTDEVIEWINSREANNEEYLILGDFNHTLAHPRSWLWKNIKSNTSDTPLLLTEDTKA 261
Query: 62 TC---NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
C + + + + + SF + ++ D ++ +LS HCP+ E
Sbjct: 262 RCTVKQWKRDWPKYTTFTRLIDHGITNISNRSFQVTQQQFTEADVKKYQLSDHCPILFEM 321
Query: 119 D 119
+
Sbjct: 322 N 322
>gi|83309117|ref|YP_419381.1| exonuclease III [Magnetospirillum magneticum AMB-1]
gi|82943958|dbj|BAE48822.1| Exonuclease III [Magnetospirillum magneticum AMB-1]
Length = 263
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 33/137 (24%), Gaps = 23/137 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------------------WQK 45
+ WA + ++AGDFN
Sbjct: 128 VREITAWAAAEFTPDSRAILAGDFNIAPLEADVWSHKQLLKVVSHTPVEVELLNAFQASV 187
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--QSDLDT 103
D + P E++ R+ R + + + +
Sbjct: 188 PFVDAMRHFVPPEEKLFTWWSYRSPDWQKN-DRGRRLDHVWVTPALVPSLRGMLVAREAR 246
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+ +++D
Sbjct: 247 SWEQPSDHVPVMVDFDL 263
>gi|237719516|ref|ZP_04549997.1| exodeoxyribonuclease [Bacteroides sp. 2_2_4]
gi|260174497|ref|ZP_05760909.1| exodeoxyribonuclease [Bacteroides sp. D2]
gi|293370159|ref|ZP_06616719.1| exodeoxyribonuclease III [Bacteroides ovatus SD CMC 3f]
gi|315922764|ref|ZP_07919004.1| exodeoxyribonuclease [Bacteroides sp. D2]
gi|229451376|gb|EEO57167.1| exodeoxyribonuclease [Bacteroides sp. 2_2_4]
gi|292634656|gb|EFF53185.1| exodeoxyribonuclease III [Bacteroides ovatus SD CMC 3f]
gi|313696639|gb|EFS33474.1| exodeoxyribonuclease [Bacteroides sp. D2]
Length = 253
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 34/140 (24%), Gaps = 28/140 (20%)
Query: 3 SQQG---EWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q WL+ + + K+ ++ GD+N I D +
Sbjct: 117 ERQAFKMVWLEDFQKYVMELQKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
EK+ R S ++ +
Sbjct: 177 WMTRFLSAGYVDSFRTLCPEKQEYTWWSYRFNSRAKNKGW--RIDYCMVSEPVRPLLKRA 234
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ S HCP+ +E
Sbjct: 235 --YILNEAVHSDHCPMALEI 252
>gi|134045625|ref|YP_001097111.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
gi|132663250|gb|ABO34896.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
Length = 249
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 37/136 (27%), Gaps = 25/136 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------ 49
+Q +W + + + + ++ P + GD N I + +
Sbjct: 119 RQ-KWDQDFLNYVKTLENKKPVIFCGDLNVAHKEIDLKNPKTNVKNAGFTPEERKGFDNI 177
Query: 50 ------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
F +E ++ R + F I S +
Sbjct: 178 VNSGFLDTFREFNKEPDNYSWWSYRFNARARNIGW--RIDYFCISESLRNNL--KDAFIM 233
Query: 104 RRSKLSTHCPLTIEYD 119
S HCP+ I +D
Sbjct: 234 SEIMGSDHCPVGIIFD 249
>gi|313618350|gb|EFR90386.1| exodeoxyribonuclease III [Listeria innocua FSL S4-378]
Length = 253
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + ++ + P V+ GD N I + + +
Sbjct: 126 DAILEYVK-NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGF 184
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + ++ R + D +V
Sbjct: 185 IDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH----ADVL 240
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E +
Sbjct: 241 GSDHCPVELELNL 253
>gi|288799645|ref|ZP_06405104.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
gi|288332893|gb|EFC71372.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
Length = 250
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 29/123 (23%), Gaps = 22/123 (17%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ P V+ GD N I + + +
Sbjct: 132 KLDASKPVVVCGDMNVAHQEIDLKNPKTNRRNAGFTDEEREKMTNLLDNGFIDTFRYLYP 191
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E+ + R K+ D ++ S HCP+ ++
Sbjct: 192 EEVTYSWWSYRFKAREKNTGWRIDYFLISERLKSNLTDAKIHTDIFG----SDHCPVELD 247
Query: 118 YDF 120
F
Sbjct: 248 LTF 250
>gi|163851383|ref|YP_001639426.1| exodeoxyribonuclease III Xth [Methylobacterium extorquens PA1]
gi|163662988|gb|ABY30355.1| exodeoxyribonuclease III Xth [Methylobacterium extorquens PA1]
Length = 264
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
L+ A + T V+AGDFN D ++ + +G
Sbjct: 131 MARLRSHARALMTTEEALVLAGDFNVIPEPEDAADPTVWTQDALFLPETRRAFRALLAEG 190
Query: 51 LLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ S + I D+ + +VS K
Sbjct: 191 FTDGLRACEPSAGLYTFWDYQAGCWPRNQGIRIDHLLLSPQAADRLVSASVQRHLRGLEK 250
Query: 108 LSTHCPLTIEYD 119
S H P+T+E
Sbjct: 251 PSDHVPVTVELS 262
>gi|146299724|ref|YP_001194315.1| exodeoxyribonuclease III Xth [Flavobacterium johnsoniae UW101]
gi|146154142|gb|ABQ04996.1| exodeoxyribonuclease III Xth [Flavobacterium johnsoniae UW101]
Length = 258
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 36/131 (27%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ L + A + +P ++ GD+N + + + G
Sbjct: 126 DRLAERAAILLSLKVPVLLIGDYNVMPTELDVYKPEKWINDALFKPEIRKAFAAIVSQGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+++ + + D+ + ++ S K
Sbjct: 186 TDAIRTLYPDEKIYTFWDYFRNAYQRNAGLRIDHFLLSPQIASALHSGGVDRHVRGWEKT 245
Query: 109 STHCPLTIEYD 119
S H P+ I+ D
Sbjct: 246 SDHAPVWIQID 256
>gi|16800960|ref|NP_471228.1| hypothetical protein lin1894 [Listeria innocua Clip11262]
gi|16414395|emb|CAC97124.1| lin1894 [Listeria innocua Clip11262]
gi|313623313|gb|EFR93545.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
Length = 251
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + ++ + P V+ GD N I + + +
Sbjct: 124 DAILEYVK-NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + ++ R + D +V
Sbjct: 183 IDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH----ADVL 238
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E +
Sbjct: 239 GSDHCPVELELNL 251
>gi|322514720|ref|ZP_08067746.1| exodeoxyribonuclease III [Actinobacillus ureae ATCC 25976]
gi|322119315|gb|EFX91431.1| exodeoxyribonuclease III [Actinobacillus ureae ATCC 25976]
Length = 305
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 37/135 (27%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKES----- 61
L+ + + ++ P VI GD N + + ++ DG P+E+E
Sbjct: 170 LQHYLETELTPENPIVIMGDMNISPTDLDIGIGEPNRKRWLRDGKCSFLPEEREWLDRLY 229
Query: 62 ------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D + V
Sbjct: 230 NYGLVDTFRVMNPQANDKFSWFDYRSKGFDDNRGLRIDLVLASKGLAGHCVETGIDLEIR 289
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 290 AMEKPSDHAPVWAVF 304
>gi|254374251|ref|ZP_04989733.1| exodeoxyribonuclease III [Francisella novicida GA99-3548]
gi|151571971|gb|EDN37625.1| exodeoxyribonuclease III [Francisella novicida GA99-3548]
Length = 262
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 42/132 (31%), Gaps = 22/132 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------------------WQKMDPD 49
K+ +++++G F++ GDFN I + + +
Sbjct: 132 KEILKEQVESGRDFIVCGDFNIVHKEIDIKNWKSNYGKTSGVLPEEQAWLDHIFDDLGWV 191
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ E R ++ + + + +SD R + S
Sbjct: 192 DIFRVINHEPLQYTWWSNRGQARANNVGW--RIDYHISTPTIKDKVVPESDYIYRENWFS 249
Query: 110 THCPLTIEYDFE 121
H PLTI YDFE
Sbjct: 250 DHAPLTISYDFE 261
>gi|187932631|ref|YP_001886154.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum B str. Eklund 17B]
gi|187720784|gb|ACD22005.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum B str. Eklund 17B]
Length = 258
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 9/123 (7%)
Query: 5 QGEW-----LKKWAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
Q L ++ ++ K +P +I GDFN NS + + L+
Sbjct: 139 QARAYELKKLSEFIKKEQEKEDLPLIIMGDFNSNPNSKLIKNFTSGNIFNKRLVAVQDMN 198
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
KE + F I+ + + S H PL E
Sbjct: 199 KELYTKAT---MGHFKNKEKGSHIDYIFVSEEFEIIDVEIVKYNVNGKYPSDHYPLMAEI 255
Query: 119 DFE 121
+ +
Sbjct: 256 NIK 258
>gi|259908294|ref|YP_002648650.1| Exodeoxyribonuclease III [Erwinia pyrifoliae Ep1/96]
gi|224963916|emb|CAX55420.1| Exodeoxyribonuclease III [Erwinia pyrifoliae Ep1/96]
Length = 268
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
L+ + +Q+ K +I GD N + + +
Sbjct: 130 RDLQSYLEQQQKADNQLLIMGDMNISSSDLDIGIGEESRKRWLRTGKCSFLPEEREWMST 189
Query: 45 KMDPDGLLIRFPQE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M+ Q + R+K D + D + V+
Sbjct: 190 LMNWGLYDTWRTQNATVNDRFSWFDYRSKGFDDNRGLRIDLILASRPLADRCVATGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ E+
Sbjct: 250 IRAMEKPSDHAPIWAEFS 267
>gi|294806497|ref|ZP_06765338.1| exodeoxyribonuclease III [Bacteroides xylanisolvens SD CC 1b]
gi|294446360|gb|EFG14986.1| exodeoxyribonuclease III [Bacteroides xylanisolvens SD CC 1b]
Length = 253
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 34/140 (24%), Gaps = 28/140 (20%)
Query: 3 SQQG---EWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q WL+ + + K+ ++ GD+N I D +
Sbjct: 117 ERQAFKMVWLEDFQKYVMELQKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
EK+ R S ++ +
Sbjct: 177 WMTRFLSAGYVDSFRTLCPEKQEYTWWSYRFNSRAKNKGW--RIDYCMVSEPVRPLLKRA 234
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ S HCP+ +E
Sbjct: 235 --YILNEAVHSDHCPMALEI 252
>gi|255013539|ref|ZP_05285665.1| exodeoxyribonuclease [Bacteroides sp. 2_1_7]
Length = 253
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 34/131 (25%), Gaps = 25/131 (19%)
Query: 8 WLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------------- 49
WL+ + + K+ ++ GD+N I D +
Sbjct: 125 WLEDFQKYVVELQKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEEREWMTRFLSA 184
Query: 50 ---GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
EK+ R S ++ + S ++ +
Sbjct: 185 GFIDTFRLLNPEKQEYTWWSYRFNSRAKNKGW--RIDYCMVSEAMK--SRVKAAYILNDA 240
Query: 107 KLSTHCPLTIE 117
S HCP +E
Sbjct: 241 VHSDHCPAVLE 251
>gi|15639119|ref|NP_218565.1| exodeoxyribonuclease (exoA) [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189025359|ref|YP_001933131.1| exodeoxyribonuclease [Treponema pallidum subsp. pallidum SS14]
gi|3322391|gb|AAC65116.1| exodeoxyribonuclease (exoA) [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189017934|gb|ACD70552.1| exodeoxyribonuclease [Treponema pallidum subsp. pallidum SS14]
gi|291059544|gb|ADD72279.1| exodeoxyribonuclease III [Treponema pallidum subsp. pallidum str.
Chicago]
gi|313505256|gb|ADR64396.1| exodeoxyribonuclease III [Treponema pallidum subsp. pallidum]
gi|313505276|gb|ADR64415.1| exodeoxyribonuclease III [Treponema pallidum subsp. pallidum str.
Mexico A]
Length = 264
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 22/131 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMD 47
+ + D++ G ++ GD+N I + +
Sbjct: 136 CAAFRAFCDEERTAGQHVILCGDYNIAHKEIDLAHPQENEGNPGFLPQERAWMDTFTEAG 195
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F E + R ++ +D +F ++ S
Sbjct: 196 YADSFRAFCTEGQQYTWWSYRARARARNIGW--RIDYQCVDQAF--LARVTSSQILSEVT 251
Query: 108 LSTHCPLTIEY 118
S HCP+ + Y
Sbjct: 252 GSDHCPVCLTY 262
>gi|324998398|ref|ZP_08119510.1| exodeoxyribonuclease III Xth [Pseudonocardia sp. P1]
Length = 287
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 30/132 (22%), Gaps = 19/132 (14%)
Query: 7 EWLKKWADQKIKTGIPF-VIAGDFNRKINSIGDTD------------------DFWQKMD 47
WL DQ + V+AGD N D
Sbjct: 132 RWLAALRDQVVAGDPATTVVAGDVNIAPTDDDVWDRSQFDGATHVTPAEREALAGLVGAG 191
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+L ++ R + D D + + +
Sbjct: 192 LHDVLRDRWPDERVFTYWDYRAGRFHQDQGMRIDLVLAGEDPAGRRAAVWVDRKARKGRS 251
Query: 108 LSTHCPLTIEYD 119
S H P+ ++ D
Sbjct: 252 PSDHAPVVLDLD 263
>gi|323529504|ref|YP_004231656.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1001]
gi|323386506|gb|ADX58596.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1001]
Length = 269
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 18/130 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLI 53
L A + +++G P V+AGDFN + ++++ G
Sbjct: 131 LIDHAAKLLRSGHPVVLAGDFNVVPTDEDIYNPRSWLKDALLQPESRERYRRLVAQGWTD 190
Query: 54 RFPQ---EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ + + D+ D + + S
Sbjct: 191 ALRTHFGDERVYTFWDYFRRHWDTNSGLRIDHILLSPDLAPRLRDAGVDRWVRGEPHASD 250
Query: 111 HCPLTIEYDF 120
H P +E D
Sbjct: 251 HAPTWVELDM 260
>gi|260426641|ref|ZP_05780620.1| exodeoxyribonuclease III [Citreicella sp. SE45]
gi|260421133|gb|EEX14384.1| exodeoxyribonuclease III [Citreicella sp. SE45]
Length = 260
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 18/130 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD 49
E L+ A + +P ++AGD+N + F + ++
Sbjct: 128 MERLEARARALLADEMPAMMAGDYNVIPQAEDAAKPESWTEDALYLPQTRAAFRRILNLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ E ++ + L+ + + R K
Sbjct: 188 FTEAFRTRHPEPGHYSFWDYQAGAWQRNNGIRIDHILLTPQAADLMRDVQIDRDIRGRDK 247
Query: 108 LSTHCPLTIE 117
S H P+ ++
Sbjct: 248 PSDHVPVWVD 257
>gi|240138546|ref|YP_002963018.1| Exodeoxyribonuclease III (Exonuclease III) (EXO III) (AP
endonuclease VI) [Methylobacterium extorquens AM1]
gi|240008515|gb|ACS39741.1| Exodeoxyribonuclease III (Exonuclease III) (EXO III) (AP
endonuclease VI) [Methylobacterium extorquens AM1]
Length = 264
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
L+ A + T V+AGDFN D ++ + +G
Sbjct: 131 MARLRSHARALMTTEEALVLAGDFNVIPEPEDAADPSVWTQDALFLPETRRAFRALLAEG 190
Query: 51 LLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ S + I D+ + +VS K
Sbjct: 191 FTDGLRACEPSAGLYTFWDYQAGCWPRNQGIRIDHLLLSPQAADRLVSASVQRHLRGLEK 250
Query: 108 LSTHCPLTIEYD 119
S H P+T+E
Sbjct: 251 PSDHVPVTVELS 262
>gi|296393768|ref|YP_003658652.1| exodeoxyribonuclease III Xth [Segniliparus rotundus DSM 44985]
gi|296180915|gb|ADG97821.1| exodeoxyribonuclease III Xth [Segniliparus rotundus DSM 44985]
Length = 267
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 29/136 (21%), Gaps = 23/136 (16%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FW 43
L Q E W +AGD+N D +
Sbjct: 136 LKDQAE---GWLAA--DPEAKIALAGDWNIAPFDEDVWDPSLFEGKTHTSAPERAAFFAF 190
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
++ + + D + ++ +
Sbjct: 191 EQAGFTDVARPHTPGPGLYTYWDYTQLRFPRREGMRIDFVLGSPALARAVQGASVDREER 250
Query: 104 RRSKLSTHCPLTIEYD 119
+ S H P+ ++ +
Sbjct: 251 KGKGASDHAPVVVDLE 266
>gi|188533711|ref|YP_001907508.1| Exodeoxyribonuclease III [Erwinia tasmaniensis Et1/99]
gi|188028753|emb|CAO96615.1| Exodeoxyribonuclease III [Erwinia tasmaniensis Et1/99]
Length = 268
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 37/139 (26%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
L+ + +Q+ K VI GD N + + + +
Sbjct: 130 RDLQSYLEQQQKADNQVVIMGDMNISSSDLDIGIGEVNRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M+ + Q + R+K D + D + V+
Sbjct: 190 LMNWGLVDTWRAQNAEVNDRFSWFDYRSKGFDDNRGLRIDLILASRPLAGRCVATGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ ++
Sbjct: 250 IRAMEKPSDHAPIWAQFSL 268
>gi|42527240|ref|NP_972338.1| exodeoxyribonuclease III [Treponema denticola ATCC 35405]
gi|41817664|gb|AAS12249.1| exodeoxyribonuclease III [Treponema denticola ATCC 35405]
Length = 256
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 22/129 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
+ ++ D + G ++ GDFN I + +
Sbjct: 130 CAAILEFCDSVQEEGNNVILCGDFNIAHKPIDLANPKSNEKNPGYLPEERAWMDEFTSSG 189
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +E R ++ +++SF + +
Sbjct: 190 YTDTFRHFCKEPAKYTWWSYRFRAREKNIGW--RLDYHCVNDSFLAKIKE--SIILDGVM 245
Query: 108 LSTHCPLTI 116
S HCP+ +
Sbjct: 246 GSDHCPVKL 254
>gi|237743089|ref|ZP_04573570.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
gi|229433385|gb|EEO43597.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
Length = 253
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 24/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ +K+ ++ P V+ GD N I + + +
Sbjct: 124 DEFRKYLK-NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLDSGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ R ++ + D + ++V +
Sbjct: 183 IDTFRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKELEKNLVDAEIHTQIEG--- 239
Query: 108 LSTHCPLTIEYDFEK 122
S HCP+ + D +K
Sbjct: 240 -SDHCPVVLFLDLDK 253
>gi|260589662|ref|ZP_05855575.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|331083093|ref|ZP_08332210.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
gi|260539902|gb|EEX20471.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|330405095|gb|EGG84632.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
Length = 251
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 32/130 (24%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDGL 51
+ + Q++ P ++ GD N I + +
Sbjct: 127 RAYL-QQLDEKKPVIMCGDLNVAHQEIDLKNPKTNRHNAGFTDEEREKFTTFLDAGFTDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + E R K+ D ++S S
Sbjct: 186 FRYFYPDKTEIYSWWSYRFKAREKNAGWRIDYFCTSKRLDEKLLSASIHTDIFG----SD 241
Query: 111 HCPLTIEYDF 120
HCP+ ++ +
Sbjct: 242 HCPVEVQIEL 251
>gi|149374747|ref|ZP_01892520.1| exonuclease III [Marinobacter algicola DG893]
gi|149360636|gb|EDM49087.1| exonuclease III [Marinobacter algicola DG893]
Length = 270
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 30/139 (21%), Gaps = 27/139 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQKM 46
L ++ D+ V+ GD N + Q
Sbjct: 132 LMRYLDELKAANGEIVVMGDMNISPTDQDIGIGADNAKRWLRTGKCSFLPEEREWLGQVE 191
Query: 47 DPDGLLIRFP---QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDL 101
+ +E ++ R+K + + S
Sbjct: 192 SRGFTDVFRHLHPEESDTFSWFDYRSKGFDRDPRRGLRIDLIMASDPLLPKAEEAGVSYD 251
Query: 102 DTRRSKLSTHCPLTIEYDF 120
+ S HCP+ +
Sbjct: 252 IRAMERPSDHCPVWARFAL 270
>gi|320536290|ref|ZP_08036333.1| exodeoxyribonuclease III [Treponema phagedenis F0421]
gi|320146850|gb|EFW38423.1| exodeoxyribonuclease III [Treponema phagedenis F0421]
Length = 258
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 22/130 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
++++ D K G ++ GD+N I + +
Sbjct: 130 CAAMREFCDNLQKEGQDVILCGDYNIAHKPIDLANPKTNEKNPGYLPEEREWMDVFTGAG 189
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F E E R K+ ++ F +S + +
Sbjct: 190 YVDTFRHFCAEPEHYTWWTYRFKARERNVGW--RIDYHCVNEDFLPK--VKSSIILKDVF 245
Query: 108 LSTHCPLTIE 117
S HCP+ +
Sbjct: 246 GSDHCPIKLS 255
>gi|299146132|ref|ZP_07039200.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_23]
gi|298516623|gb|EFI40504.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_23]
Length = 253
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 34/140 (24%), Gaps = 28/140 (20%)
Query: 3 SQQG---EWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q WL+ + + K+ ++ GD+N I D +
Sbjct: 117 ERQAFKMVWLEDFQKYVMELQKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
EK+ R S ++ +
Sbjct: 177 WMTRFLSAGYVDAFRTLCPEKQEYTWWSYRFNSRAKNKGW--RIDYCMVSEPVRPLLKRA 234
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ S HCP+ +E
Sbjct: 235 --YILNEAVHSDHCPMALEI 252
>gi|91777907|ref|YP_553115.1| exodeoxyribonuclease III [Burkholderia xenovorans LB400]
gi|91690567|gb|ABE33765.1| Exodeoxyribonuclease III [Burkholderia xenovorans LB400]
Length = 270
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 18/133 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLI 53
L + A + ++G P V+AGDFN + ++++ G
Sbjct: 131 LIRHAAKLYRSGHPVVLAGDFNVVPTDEDIYNPRSWLKDALLQPESRERYRQLLAQGWTD 190
Query: 54 RFPQ---EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + D+ D + + S
Sbjct: 191 ALRTRFGNERVYTFWDYFRRHWETNSGLRIDHLLLSADLAPRLRDAGVDRWVRGEPHASD 250
Query: 111 HCPLTIEYDFEKG 123
H P +E + G
Sbjct: 251 HAPTWVELEMGAG 263
>gi|89068210|ref|ZP_01155620.1| exodeoxyribonuclease III [Oceanicola granulosus HTCC2516]
gi|89046127|gb|EAR52185.1| exodeoxyribonuclease III [Oceanicola granulosus HTCC2516]
Length = 264
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 34/131 (25%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------QKMDPD 49
E L A + ++ P ++AGD+N + ++
Sbjct: 132 MERLHARAAELMEAEEPAIMAGDYNVIPQPEDAARPKAWVKDALFLPQTRRAWRRLLNLG 191
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + ++ + L+ + + R K
Sbjct: 192 FTEAFRAKTLAAGHYSFWDYQAGAWQKNDGIRIDHVLMTPQAADLMRDVWIDSAVRGRDK 251
Query: 108 LSTHCPLTIEY 118
S H P+ ++
Sbjct: 252 PSDHVPVVVDL 262
>gi|298481071|ref|ZP_06999265.1| exodeoxyribonuclease III [Bacteroides sp. D22]
gi|298272645|gb|EFI14212.1| exodeoxyribonuclease III [Bacteroides sp. D22]
Length = 254
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 34/140 (24%), Gaps = 28/140 (20%)
Query: 3 SQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q E +K+ + K+ ++ GD+N I D +
Sbjct: 118 ERQAFKMGWLEDFQKYVMELQKSRPNLILCGDYNICHEPIDIHDPVRNATNSGFLPEERE 177
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
EK+ R S ++ +
Sbjct: 178 WMTRFLSAGYVDSFRTLCPEKQEYTWWSYRFNSRAKNKGW--RIDYCMVSEPVRPLLKRA 235
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ S HCP+ +E
Sbjct: 236 --YILNEAVHSDHCPMALEI 253
>gi|133712474|gb|ABO37085.1| ExoA [Treponema paraluiscuniculi]
Length = 264
Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 22/131 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMD 47
+ + D++ G ++ GD+N I + +
Sbjct: 136 CAAFRAFCDEERTAGQHVILCGDYNIAHKEIDLAHPQENEGNPGFLPQERAWMDTFTEAG 195
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F E + R ++ +D +F ++ S
Sbjct: 196 YADSFRAFCTEGQQYTWWSYRARARARNIGW--RIDYQCVDQAF--LARVTSSQILSEVT 251
Query: 108 LSTHCPLTIEY 118
S HCP+ + Y
Sbjct: 252 GSDHCPVCLTY 262
>gi|281423696|ref|ZP_06254609.1| exodeoxyribonuclease III [Prevotella oris F0302]
gi|281402248|gb|EFB33079.1| exodeoxyribonuclease III [Prevotella oris F0302]
Length = 250
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 28/123 (22%), Gaps = 22/123 (17%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
++ P ++ GD N I + + +
Sbjct: 132 RLDEQKPVIVCGDLNVAHQEIDLKNPKSNRRNAGFTDEERDKMTQLLSHGFTDTFRTLYP 191
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E+ + R ++ D + S HCP+ ++
Sbjct: 192 EQVTYSWWSYRFRAREKNAGWRIDYFLISDRLRPQLKDASIHTEIFG----SDHCPIEVD 247
Query: 118 YDF 120
+
Sbjct: 248 LEL 250
>gi|169630763|ref|YP_001704412.1| putative exodeoxyribonuclease [Mycobacterium abscessus ATCC 19977]
gi|169242730|emb|CAM63758.1| Putative exodeoxyribonuclease [Mycobacterium abscessus]
Length = 273
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 29/136 (21%), Gaps = 19/136 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK----------------- 45
+ + +G VI GD+N +
Sbjct: 138 ERFMAAVGARMAVLAASGRDTVICGDWNIGHTERDIKAWKANQKKAGFLPEERAWVGSLL 197
Query: 46 -MDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ R K+ + D D S D
Sbjct: 198 EAGWVDSFRLLHPDVDGPYSWWSWRGKAFDNDAGWRIDYHLATADLGRRAHSARVERADA 257
Query: 104 RRSKLSTHCPLTIEYD 119
+ S H P+T+EY
Sbjct: 258 YALRWSDHAPVTVEYR 273
>gi|149925921|ref|ZP_01914184.1| DNA-(apurinic or apyrimidinic site) lyase [Limnobacter sp. MED105]
gi|149825209|gb|EDM84420.1| DNA-(apurinic or apyrimidinic site) lyase [Limnobacter sp. MED105]
Length = 260
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 32/125 (25%), Gaps = 21/125 (16%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------------GLLIR 54
D+ P V+ GD+N I + +
Sbjct: 135 DEFESKKKPVVLCGDWNIAHQEIDLKNWKGNLKNSGFTPEERAWIGDVINKRGWIDAYRV 194
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
E+ C N+ + ++ + + S + K S H PL
Sbjct: 195 LYPEETDGCYTWWSNRGQAYAKNVGWRIDYQMVSPALRDSIREVSVY--KGQKFSDHAPL 252
Query: 115 TIEYD 119
+YD
Sbjct: 253 IADYD 257
>gi|15892951|ref|NP_360665.1| exodeoxyribonuclease III [Rickettsia conorii str. Malish 7]
gi|15620145|gb|AAL03566.1| exodeoxyribonuclease III [Rickettsia conorii str. Malish 7]
Length = 260
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 27/126 (21%), Gaps = 18/126 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD--GLL 52
+ K +I GDFN I ++ L
Sbjct: 133 NYLSTKKSFDEKTIIGGDFNIAPFDIDVYSPKLLAETTCFTEVEQKKLRTILNSGFEDLY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
K+ R + D + + + + K S H
Sbjct: 193 RLMHPSKQEFSWWDYRAGCFEQNKGMRIDMILGCNNTIDYLENCYMDYNLRTQEKPSDHI 252
Query: 113 PLTIEY 118
P+ +
Sbjct: 253 PVIASF 258
>gi|312131268|ref|YP_003998608.1| exodeoxyribonuclease iii xth [Leadbetterella byssophila DSM 17132]
gi|311907814|gb|ADQ18255.1| exodeoxyribonuclease III Xth [Leadbetterella byssophila DSM 17132]
Length = 254
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 32/127 (25%), Gaps = 22/127 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGLLI 53
+A++ TG P +I GD N I + + +
Sbjct: 132 YAEKLKATGTPLLICGDVNICHKEIDIHNPKSNAKTSGFLPEERAWVDRFCECGFVDTFR 191
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
++ R + N + +S HCP
Sbjct: 192 HKVKDPHHYTWWSYRAGARGKNLGW--RIDYIFAANMLPESIQNVHIHS--DVMMSDHCP 247
Query: 114 LTIEYDF 120
+++E+
Sbjct: 248 VSLEFKL 254
>gi|238650992|ref|YP_002916848.1| exodeoxyribonuclease III [Rickettsia peacockii str. Rustic]
gi|238625090|gb|ACR47796.1| exodeoxyribonuclease III [Rickettsia peacockii str. Rustic]
Length = 260
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 27/126 (21%), Gaps = 18/126 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD--GLL 52
+ K +I GDFN I ++ L
Sbjct: 133 NYLSTKKSFDEKTIIGGDFNIAPFDIDVYSPKLLAETTCFTEVEQKKLRTILNSGFEDLY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
K+ R + D + + + + K S H
Sbjct: 193 RLMHPSKQEFSWWDYRAGCFEQNKGMRIDMILGCNNTIDYLENCYMDYNLRTQEKPSDHI 252
Query: 113 PLTIEY 118
P+ +
Sbjct: 253 PVIASF 258
>gi|154248160|ref|YP_001419118.1| exodeoxyribonuclease III Xth [Xanthobacter autotrophicus Py2]
gi|154162245|gb|ABS69461.1| exodeoxyribonuclease III Xth [Xanthobacter autotrophicus Py2]
Length = 262
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
E L+ +A ++K P ++AGDFN + D ++ + G
Sbjct: 128 MERLEAFAADRLKLEEPLILAGDFNVIPEARDAADPSAWVGDALFLPRTRSAFRSLTHLG 187
Query: 51 LLIRFPQEKESTC-NVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
L ++ ++ + + L+ +++ K
Sbjct: 188 LTDALRATSDAGRLYTFWDYQAGAWQRDMGIRIDHLLLSPQAADKLIATGIDKHVRAWEK 247
Query: 108 LSTHCPLTIEY 118
S H P+ +
Sbjct: 248 PSDHVPIWADL 258
>gi|83944983|ref|ZP_00957349.1| exodeoxyribonuclease III [Oceanicaulis alexandrii HTCC2633]
gi|83851765|gb|EAP89620.1| exodeoxyribonuclease III [Oceanicaulis alexandrii HTCC2633]
Length = 269
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 35/139 (25%), Gaps = 28/139 (20%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKM 46
E LK +A + K P V+ GDFN
Sbjct: 131 ERLKGYAADRAKENAPLVLVGDFNIAPREHDVWSHKQLLKVVSHTPVEVEALNAWLEAGE 190
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS-------IVSYDQS 99
D + ++ R+K R + + + S+
Sbjct: 191 YIDVARELIDEPEKLFTWWSYRSKDW-RASNRGRRLDHIWVSPALKDAALKDGRDSFRIW 249
Query: 100 DLDTRRSKLSTHCPLTIEY 118
D K S H P+T+
Sbjct: 250 DNARDWEKPSDHAPVTLRL 268
>gi|303256316|ref|ZP_07342332.1| exodeoxyribonuclease III [Burkholderiales bacterium 1_1_47]
gi|302861045|gb|EFL84120.1| exodeoxyribonuclease III [Burkholderiales bacterium 1_1_47]
Length = 262
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 27/142 (19%)
Query: 3 SQQG-----EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------- 49
QQ + +K D+ ++ G V+ GDFN I + +
Sbjct: 123 RQQAKFRFLDVIKGRLDELLRDGRDVVLCGDFNIAHKEIDIKNWKGNLKNSGFLPEERQW 182
Query: 50 ----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
+ R + R ++ ++ + + + +
Sbjct: 183 ITDRLREGWQDVFRRLDPRPDRFTWWSNRGRARINNVGW--RIDYQFSTPAIASTAKETD 240
Query: 100 DLDTRRSKLSTHCPLTIEYDFE 121
R + S H PLT+ YDF
Sbjct: 241 IY--RDERFSDHAPLTVVYDFN 260
>gi|325261710|ref|ZP_08128448.1| exodeoxyribonuclease III [Clostridium sp. D5]
gi|324033164|gb|EGB94441.1| exodeoxyribonuclease III [Clostridium sp. D5]
Length = 250
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 34/129 (26%), Gaps = 24/129 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPD---GL 51
+ W + ++ P V+ GD N I + + ++
Sbjct: 127 RAWLKK-LEENKPVVVTGDMNVAHKEIDLKNPKTNRKSAGFSDEERQKFTELLDAGFIDT 185
Query: 52 LIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F ++E R ++ D +V S
Sbjct: 186 FRYFYPDQEGIYSWWSYRFRAREKNAGWRIDYFCVSECLKDRLVDAGILTDIMG----SD 241
Query: 111 HCPLTIEYD 119
HCP+ +E +
Sbjct: 242 HCPVVLEMN 250
>gi|329955159|ref|ZP_08296116.1| exodeoxyribonuclease III [Bacteroides clarus YIT 12056]
gi|328526158|gb|EGF53177.1| exodeoxyribonuclease III [Bacteroides clarus YIT 12056]
Length = 254
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 34/140 (24%), Gaps = 28/140 (20%)
Query: 3 SQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q E +++ + +T ++ GD+N +I D +
Sbjct: 117 ERQAFKMVWLEKFQQYVVELQRTRPKLILCGDYNICHEAIDIHDPVRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+K+ R S D +
Sbjct: 177 WMTRFLNAGFIDTFRLLHPDKQEYTWWSYRFNSRAKNKGWRIDYCMVNEPVRPMLKEARI 236
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ S HCP+ +E
Sbjct: 237 LNDAV----HSDHCPMMLEI 252
>gi|49474410|ref|YP_032452.1| exodeoxyribonuclease III [Bartonella quintana str. Toulouse]
gi|49239914|emb|CAF26312.1| Exodeoxyribonuclease III [Bartonella quintana str. Toulouse]
Length = 260
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 17/133 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
E L A + P V+AGD+N + + +Q++ G
Sbjct: 128 MERLYAHAKSLLAYEEPLVLAGDYNVIPTPLDAKNPQKWSNDALFLPQTRNAFQRIVHLG 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS-FSIVSYDQSDLDTRRS-KL 108
++ ++ + + L+ + S + R K
Sbjct: 188 FYDAIRNVTDTPSFSFWDFQAGAWHKNNGIRIDHLLLSPEAVDQLICAYSQTEVRGYPKS 247
Query: 109 STHCPLTIEYDFE 121
S H P+ I+ +F
Sbjct: 248 SDHAPVWIDLNFN 260
>gi|283850748|ref|ZP_06368035.1| exodeoxyribonuclease III Xth [Desulfovibrio sp. FW1012B]
gi|283573991|gb|EFC21964.1| exodeoxyribonuclease III Xth [Desulfovibrio sp. FW1012B]
Length = 254
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 32/124 (25%), Gaps = 22/124 (17%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRF 55
+ ++ P V+ GDFN ++ + + F
Sbjct: 133 AEALRRKKPIVVCGDFNTAHTALDLKNAKANEKTSGFLPEERAWLDGFVAAGYVDTFRMF 192
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+E R K+ D + + + S HCP+
Sbjct: 193 EKEGGHYSWWDYRFKARDRNVGWRIDYFFVSEELRPRVKRAWIDNTVFG----SDHCPVG 248
Query: 116 IEYD 119
+E D
Sbjct: 249 LEID 252
>gi|331694970|ref|YP_004331209.1| exodeoxyribonuclease III Xth [Pseudonocardia dioxanivorans CB1190]
gi|326949659|gb|AEA23356.1| exodeoxyribonuclease III Xth [Pseudonocardia dioxanivorans CB1190]
Length = 289
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 29/132 (21%), Gaps = 23/132 (17%)
Query: 11 KWADQKIK-----TGIPFVIAGDFNRKINSIGDTDD------------------FWQKMD 47
+W D V+AGD N D +
Sbjct: 134 RWLDALQAMVADGPTATSVVAGDMNIAPTDADVWDPSLFVDSTHVTPAERKALEALTGLG 193
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
++ + R + D D + + + S
Sbjct: 194 LHDVVRDRWPGQRVFSYWDYRAGRFHQDKGMRIDLVLVGDDAVGRVQAAWIDRQARKGSG 253
Query: 108 LSTHCPLTIEYD 119
S H P+ ++ D
Sbjct: 254 PSDHAPVMVDLD 265
>gi|255280445|ref|ZP_05345000.1| exodeoxyribonuclease III [Bryantella formatexigens DSM 14469]
gi|255268910|gb|EET62115.1| exodeoxyribonuclease III [Bryantella formatexigens DSM 14469]
Length = 253
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + ++ P + GD N I + + +
Sbjct: 126 EAFLAYLKG-LEKNKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKFSQILENGF 184
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F E+E R ++ D +V T
Sbjct: 185 IDTYRYFYPEQEGVYSWWSYRFRAREKNAGWRIDYFCVSECLKDRLVDARIHTEITG--- 241
Query: 108 LSTHCPLTIEYD 119
S HCP+ ++ +
Sbjct: 242 -SDHCPVELQIE 252
>gi|291536334|emb|CBL09446.1| exodeoxyribonuclease III [Roseburia intestinalis M50/1]
Length = 246
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 31/131 (23%), Gaps = 24/131 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ P ++ GD N I + + +
Sbjct: 121 RAYLK-RLDGSKPVILCGDLNVAHEEIDLKNPKTNRKNAGFSDEEREKMTKLLDAGFTDT 179
Query: 52 LIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + R ++ D + + S
Sbjct: 180 FRYFYPDTEQIYSWWSYRFRAREKNAGWRIDYFITSKRMNDKLTGAKIHT----DVFGSD 235
Query: 111 HCPLTIEYDFE 121
HCP+ ++ D
Sbjct: 236 HCPVELDIDLS 246
>gi|260913979|ref|ZP_05920453.1| exodeoxyribonuclease III [Pasteurella dagmatis ATCC 43325]
gi|260632066|gb|EEX50243.1| exodeoxyribonuclease III [Pasteurella dagmatis ATCC 43325]
Length = 267
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 40/136 (29%), Gaps = 25/136 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKES----- 61
L+++ ++ P +I GD N + D+ ++ G P+E+E
Sbjct: 132 LQQYLEKDHNVDNPIIIMGDMNISPTDLDIGIGDENRKRWLRTGKCSFLPEEREWMNRLY 191
Query: 62 ------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ + V +
Sbjct: 192 GYGLVDTFRHLNPDVNDKFSWFDYRSKGFDDNRGLRIDHIIANHSLAARCVDTGIALDIR 251
Query: 104 RRSKLSTHCPLTIEYD 119
K S H P+ E+
Sbjct: 252 AMEKPSDHAPVWAEFR 267
>gi|256393746|ref|YP_003115310.1| exodeoxyribonuclease III Xth [Catenulispora acidiphila DSM 44928]
gi|256359972|gb|ACU73469.1| exodeoxyribonuclease III Xth [Catenulispora acidiphila DSM 44928]
Length = 261
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 36/129 (27%), Gaps = 18/129 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGLLI 53
L + + +P+ + GDFN D ++ GL+
Sbjct: 132 LTASVAEPARGELPYAVLGDFNIAPTDADVWDMSLFAESTHVTPAERAKLADLEAQGLVE 191
Query: 54 RFPQE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
P+ + R + + D + ++ + + S
Sbjct: 192 VLPRALKYDKPYTYWDYRQLAFPKNNGMRIDLVFGNAAFAGAVRDAYVDREERKGKGASD 251
Query: 111 HCPLTIEYD 119
H P+ ++ D
Sbjct: 252 HAPVVVDLD 260
>gi|88607806|ref|YP_505072.1| exodeoxyribonuclease III, N-terminal truncation [Anaplasma
phagocytophilum HZ]
gi|88598869|gb|ABD44339.1| exodeoxyribonuclease III, N-terminal truncated [Anaplasma
phagocytophilum HZ]
Length = 185
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 19/132 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
E LK +KT + GDFN I D ++++ +G+
Sbjct: 53 EHLKDRLLNIMKTEDFLIAGGDFNVAPEEIDVHDPKALDGRLCFHILERAKFREILNNGI 112
Query: 52 LIRFPQ----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ F +++ R + + D + ++
Sbjct: 113 VDIFRTFVGIDRKEFSWWNYREGGWQNNRGLRIDALLSSPQIADKVLDCSILSKVRGWDT 172
Query: 108 LSTHCPLTIEYD 119
S H P+ + D
Sbjct: 173 PSDHAPVMGDID 184
>gi|226944961|ref|YP_002800034.1| exonuclease III [Azotobacter vinelandii DJ]
gi|226719888|gb|ACO79059.1| exodeoxyribonuclease III [Azotobacter vinelandii DJ]
Length = 270
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 29/138 (21%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ + + G P + GDFN +
Sbjct: 133 LQALLESRFDPGQPLALMGDFNIAPEDSDIGIGAENARRWLRTGKCSFLPEEREWMARLK 192
Query: 45 KMDPDGLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDL 101
+ R++ D L + + D
Sbjct: 193 DWGLQDSFRELHPQACDRFSWFDYRSRGFEDDPRRGLRIDLILTSRALRPRLRAADVDYE 252
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +E D
Sbjct: 253 LRAMDKPSDHAPVWLELD 270
>gi|292488442|ref|YP_003531324.1| exonuclease III [Erwinia amylovora CFBP1430]
gi|291553871|emb|CBA20916.1| Exonuclease III [Erwinia amylovora CFBP1430]
Length = 301
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
L + +Q+ K +I GD N + + +
Sbjct: 163 RDLHSYLEQQQKPDNQLLIMGDMNISSGDLDIGIGEENRKRWLRTGKCSFLPEEREWMDK 222
Query: 45 KMDPDGLLIRFPQE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M+ + Q + R+K D + D + V+
Sbjct: 223 LMNWGLVDTWRAQHATINDRFSWFDYRSKGFDDNRGLRIDLVLASRPLADRCVATGIDYD 282
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ E+
Sbjct: 283 IRAMEKPSDHAPIWAEFS 300
>gi|297570792|ref|YP_003696566.1| exodeoxyribonuclease III Xth [Arcanobacterium haemolyticum DSM
20595]
gi|296931139|gb|ADH91947.1| exodeoxyribonuclease III Xth [Arcanobacterium haemolyticum DSM
20595]
Length = 269
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 35/130 (26%), Gaps = 17/130 (13%)
Query: 7 EWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDF---------------WQKMDPD 49
L+ +A+ +++ + GD+N D +
Sbjct: 140 RRLRDFAEGQMRDDDAAQLALVGDWNVIPTDADVWDPAAMEDGIYLTEPERAAFHAFADA 199
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
G++ Q + + + D + + + + S
Sbjct: 200 GMVELSRQYATNYTFWDYQKLRFPKNEGMRIDYVYASPALAARSIDGTIDRDERKGKGAS 259
Query: 110 THCPLTIEYD 119
H P+ IE++
Sbjct: 260 DHVPVIIEFE 269
>gi|305666072|ref|YP_003862359.1| exodeoxyribonuclease [Maribacter sp. HTCC2170]
gi|88707506|gb|EAQ99749.1| exodeoxyribonuclease [Maribacter sp. HTCC2170]
Length = 253
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 22/127 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+++ D K +I GD+N +I D K
Sbjct: 130 QRYVDDLRKAHPNLIILGDYNICHEAIDIHDPVRNKKVSGFLPVEREWIGSFIESGFIDS 189
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+E + R + + D + ++ S H
Sbjct: 190 FRHLNKEPHNYTWWSYRANARNNNKGWRLDYGMVSEPLENRLKRSVI----LSDARHSDH 245
Query: 112 CPLTIEY 118
CP+ +E
Sbjct: 246 CPILVEL 252
>gi|119715318|ref|YP_922283.1| exodeoxyribonuclease III [Nocardioides sp. JS614]
gi|119535979|gb|ABL80596.1| Exodeoxyribonuclease III [Nocardioides sp. JS614]
Length = 262
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 29/132 (21%), Gaps = 19/132 (14%)
Query: 7 EWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDG 50
+WL + D + GD+N D +Q DG
Sbjct: 131 DWLARLRDAAQAWRDQDVALVGDWNIAPTDEDVFDMAQFARSTHVTPPERAAFQAFLEDG 190
Query: 51 LLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + D + + + +
Sbjct: 191 YVDVVRPHAPGPEVYTYWDYYRQRYERNRGMRIDFVLGSPSLAARVTGAFIDREERAGTG 250
Query: 108 LSTHCPLTIEYD 119
S H P+ ++
Sbjct: 251 ASDHAPVVVDLS 262
>gi|322434444|ref|YP_004216656.1| exodeoxyribonuclease III Xth [Acidobacterium sp. MP5ACTX9]
gi|321162171|gb|ADW67876.1| exodeoxyribonuclease III Xth [Acidobacterium sp. MP5ACTX9]
Length = 247
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 23/137 (16%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIG-------DTDDFWQ---------- 44
+ + E +K W G+P VI GDFN I D +Q
Sbjct: 115 MDRLMEQMKVWLG----DGVPTVIGGDFNVIPEEIDCHKPASWVHDALFQPESRARYRGM 170
Query: 45 -KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
++ ++ I D+ + + + S +
Sbjct: 171 LELGYTDAFRTLHPGLGGQFTFWDYFRQAFESNRGIRIDHFLLTAEMAGRLESCEIDRGP 230
Query: 103 TRRSKLSTHCPLTIEYD 119
+K S H P+ + +
Sbjct: 231 RGEAKPSDHTPIVVRFR 247
>gi|188994231|ref|YP_001928483.1| exodeoxyribonuclease III [Porphyromonas gingivalis ATCC 33277]
gi|188593911|dbj|BAG32886.1| exodeoxyribonuclease III [Porphyromonas gingivalis ATCC 33277]
Length = 254
Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 35/140 (25%), Gaps = 28/140 (20%)
Query: 3 SQQG---EWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q WL+ + ++ K+ ++ GD+N I D +
Sbjct: 117 ERQAFKMVWLEHFQSYVNELRKSRPNLILCGDYNICHEPIDIHDPIRNAKNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
E R ++ D + + I
Sbjct: 177 WMSRFLADGYVDTFRHTHPELVLYSWWSYRFQARSRNKGWRIDYCMVTNNLADRIKGAYI 236
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ S HCP+ +E
Sbjct: 237 LNEAV----HSDHCPIVLEI 252
>gi|296161285|ref|ZP_06844093.1| exodeoxyribonuclease III Xth [Burkholderia sp. Ch1-1]
gi|295888443|gb|EFG68253.1| exodeoxyribonuclease III Xth [Burkholderia sp. Ch1-1]
Length = 270
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 35/129 (27%), Gaps = 18/129 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLI 53
L + A + K+G P V+AGDFN + ++++ G
Sbjct: 131 LIRHAAKLYKSGHPVVLAGDFNVVPTDEDIYNPRSWLKDALLQPESRERYRQLLAQGWTD 190
Query: 54 RFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + D+ D + + S
Sbjct: 191 ALRTHFGAERVYTFWDYFRRHWETNSGLRIDHVLLSADLAPRLRDAGVDRWVRGEPHASD 250
Query: 111 HCPLTIEYD 119
H P +E +
Sbjct: 251 HAPAWVELE 259
>gi|225548156|ref|ZP_03769441.1| hypothetical protein RUMHYD_00135 [Blautia hydrogenotrophica DSM
10507]
gi|225040687|gb|EEG50933.1| hypothetical protein RUMHYD_00135 [Blautia hydrogenotrophica DSM
10507]
Length = 251
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 34/136 (25%), Gaps = 25/136 (18%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+W + + + K++ P V GD N I + + +
Sbjct: 120 MDWERDFLEYLTKLEERKPVVWCGDLNVAHQEIDLKNPKTNRKNAGFTDEERACFTKVLE 179
Query: 50 ----GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
F ++E R ++ D +V
Sbjct: 180 SGFIDTFRYFYPDQEGIYSWWSYRFRAREKNAGWRIDYFLVSSSLREKMVDAKIHTQVLG 239
Query: 105 RSKLSTHCPLTIEYDF 120
S HCP+ ++
Sbjct: 240 ----SDHCPVELDITL 251
>gi|317506931|ref|ZP_07964703.1| exodeoxyribonuclease III [Segniliparus rugosus ATCC BAA-974]
gi|316254859|gb|EFV14157.1| exodeoxyribonuclease III [Segniliparus rugosus ATCC BAA-974]
Length = 267
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 27/135 (20%), Gaps = 23/135 (17%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FW 43
L Q E W + GD+N D +
Sbjct: 136 LRGQAE---GWLAA--DADAKIALTGDWNIAPFDEDVWDPSFFDGKTHTSGPERDAFFAF 190
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+K + + D + S+ +
Sbjct: 191 EKSGFTDVARPHTPGPGVYTYWDYTQLRFPRREGMRIDFVLGSPALAASVTGASVDREER 250
Query: 104 RRSKLSTHCPLTIEY 118
+ S H P+ +E
Sbjct: 251 KGKGASDHAPVVVEL 265
>gi|284031341|ref|YP_003381272.1| exodeoxyribonuclease III Xth [Kribbella flavida DSM 17836]
gi|283810634|gb|ADB32473.1| exodeoxyribonuclease III Xth [Kribbella flavida DSM 17836]
Length = 267
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 30/132 (22%), Gaps = 19/132 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
+ + + G ++ GD N + ++
Sbjct: 135 DAITVRLTELRADGRHVLMCGDLNIAHREVDLKAWKANRKKSGFLPEERAWLDRLFEAGW 194
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D R K+ + D + + + + T +
Sbjct: 195 VDLGRRFGGDGPGPYSWWSWRGKAFDNDAGWRIDYQIASPELAAAATGCTVDRAPTYAER 254
Query: 108 LSTHCPLTIEYD 119
S H P+ Y+
Sbjct: 255 WSDHAPVVATYE 266
>gi|126463827|ref|YP_001044940.1| exodeoxyribonuclease III Xth [Rhodobacter sphaeroides ATCC 17029]
gi|126105638|gb|ABN78168.1| Exodeoxyribonuclease III [Rhodobacter sphaeroides ATCC 17029]
Length = 255
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 32/128 (25%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLL- 52
L A++ ++ +P V+AGDFN + + ++ G
Sbjct: 127 LLNHAEELLRHDVPVVLAGDFNVMPTDLDVYRPERWREDALFRPEVRAAFARLLAQGWTD 186
Query: 53 --IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
E + + D+ + K S
Sbjct: 187 SIRHLYPEDRIYTFWDYFRNAWERDAGLRLDHLLLSPSLLTRLKGAGVDRHVRGWEKASD 246
Query: 111 HCPLTIEY 118
H P IE
Sbjct: 247 HAPAWIEI 254
>gi|258541736|ref|YP_003187169.1| hypothetical protein APA01_06400 [Acetobacter pasteurianus IFO
3283-01]
gi|256632814|dbj|BAH98789.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01]
gi|256635871|dbj|BAI01840.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-03]
gi|256638926|dbj|BAI04888.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-07]
gi|256641980|dbj|BAI07935.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-22]
gi|256645035|dbj|BAI10983.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-26]
gi|256648090|dbj|BAI14031.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-32]
gi|256651143|dbj|BAI17077.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654134|dbj|BAI20061.1| hypothetical protein [Acetobacter pasteurianus IFO 3283-12]
Length = 321
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 41/123 (33%), Gaps = 10/123 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L QQ L W + + F I GDFNR + D + + L S
Sbjct: 204 LWQQFAALDDWVATRTQHHEAFAIMGDFNRHLT---VHDPLFLTLLRIAPLDLATAGMAS 260
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
C +D+ ++ + + + NS + LS HCP++I
Sbjct: 261 PCQGGSY---FIDHIILGGAARAWKVPNSLR----VIPLAEETGQNLSDHCPVSISLRLP 313
Query: 122 KGN 124
N
Sbjct: 314 STN 316
>gi|220923190|ref|YP_002498492.1| exodeoxyribonuclease III Xth [Methylobacterium nodulans ORS 2060]
gi|219947797|gb|ACL58189.1| exodeoxyribonuclease III Xth [Methylobacterium nodulans ORS 2060]
Length = 263
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 18/132 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDG 50
L A + V+AGD+N I + F ++
Sbjct: 131 RRLLLHARALREKEEVLVLAGDYNVIPEPIDVANPEAWTGDALFLPESRAAFRMLLNEGF 190
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKL 108
++ ++ + + L+ +VS K
Sbjct: 191 TDALRACDERPGLYTFWDYQAGAWSRNLGIRIDHLLLSPQALDRLVSASVQKHLRGLDKP 250
Query: 109 STHCPLTIEYDF 120
S H P+T+E D
Sbjct: 251 SDHVPVTVELDL 262
>gi|224371156|ref|YP_002605320.1| ExoA [Desulfobacterium autotrophicum HRM2]
gi|223693873|gb|ACN17156.1| ExoA [Desulfobacterium autotrophicum HRM2]
Length = 262
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 31/132 (23%), Gaps = 20/132 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
E AD+ K G VI GDFN N I + +
Sbjct: 133 EAFFAHADRLRKKGRSLVITGDFNTAHNEIDLKNPKPNSKRSGFLPVEREVLDRLVERGY 192
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F + R + + F + +
Sbjct: 193 VDTFRHFNPDTVKYSWWSYRFNARANNAGW--RIDYFFVTQDIIDKGWVTRTFIDNDILG 250
Query: 109 STHCPLTIEYDF 120
S HCP+ IE
Sbjct: 251 SDHCPVGIELTL 262
>gi|45358575|ref|NP_988132.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis S2]
gi|44921333|emb|CAF30568.1| exonuclease III [Methanococcus maripaludis S2]
Length = 249
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 36/136 (26%), Gaps = 25/136 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------ 49
+Q +W + + + ++T P V GD N I + +
Sbjct: 119 RQ-KWDEDFLSYIKTLETKKPVVFCGDLNVAHKEIDLKNPKTNVKNAGFTPEERNGFDNI 177
Query: 50 ------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
F E ++ R + F I S +
Sbjct: 178 VNSGFLDTFREFNNEPDNYSWWSYRFNARARNIGW--RIDYFCISKSLRNNL--KDAYIM 233
Query: 104 RRSKLSTHCPLTIEYD 119
S HCP+ I ++
Sbjct: 234 PEVMGSDHCPVGIIFE 249
>gi|304413776|ref|ZP_07395220.1| exonuclease III [Candidatus Regiella insecticola LSR1]
gi|304283867|gb|EFL92261.1| exonuclease III [Candidatus Regiella insecticola LSR1]
Length = 271
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 14/135 (10%), Positives = 33/135 (24%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQKM 46
L+ + +Q +I GD N + D +
Sbjct: 132 LQHYLEQHFTPDDQLLIMGDLNICPTELDIGIGSDNQKRWLRSGKCAFLPEERDWLARLQ 191
Query: 47 DPDGLLIRFPQEK---ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + + + R++ + + D + ++
Sbjct: 192 NWGLIDTFRSKNPECNDQFSWFDYRSRGFDENRGLRIDLLLASAPLASRCIATGIDYQIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 GMEKPSDHAPVWSEF 266
>gi|260773808|ref|ZP_05882723.1| hypothetical protein VIB_002285 [Vibrio metschnikovii CIP 69.14]
gi|260610769|gb|EEX35973.1| hypothetical protein VIB_002285 [Vibrio metschnikovii CIP 69.14]
Length = 299
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 4/123 (3%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L QG+ L +W ++ + F+I GDFN + GD + + + QE
Sbjct: 178 ILKTQGKALNRWLQERERHQHAFMILGDFNHNLAYQGDWLWKIINQELNKPVQLATQETP 237
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR---RSKLSTHCPLTIE 117
+ C V R + + + ++ + Q R +LS HCP+ +
Sbjct: 238 ARCQVRSRRQPDTLHRFRSL-IDHMIVSSQVVYQQIQQIVFPADEVLRYRLSDHCPINGQ 296
Query: 118 YDF 120
+ +
Sbjct: 297 FHW 299
>gi|241068614|ref|XP_002408486.1| Apurinic/apyrimidinic endonuclease, putative [Ixodes scapularis]
gi|215492474|gb|EEC02115.1| Apurinic/apyrimidinic endonuclease, putative [Ixodes scapularis]
Length = 266
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 27/126 (21%), Gaps = 18/126 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD--GLL 52
+ K +I GDFN I ++ L
Sbjct: 137 NYLSTKKSFDEKTIIGGDFNIAPFDIDVYSPKLLAETTCFTEIEQKKLRTILNSGFEDLY 196
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
K+ R + D + + + + K S H
Sbjct: 197 RLMHPSKQEFSWWDYRAGCFEQNKGMRIDMILGCNNTIDYLENCYMDYNLRTQEKPSDHI 256
Query: 113 PLTIEY 118
P+ +
Sbjct: 257 PVIASF 262
>gi|188581164|ref|YP_001924609.1| exodeoxyribonuclease III Xth [Methylobacterium populi BJ001]
gi|179344662|gb|ACB80074.1| exodeoxyribonuclease III Xth [Methylobacterium populi BJ001]
Length = 264
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 33/132 (25%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
LK A + + V+AGDFN D F +
Sbjct: 131 MARLKAHARALMASEDALVLAGDFNVIPEPEDAADPAAWTQDALFLPETRRAFRALLAEG 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
E + ++ + L+ +VS K
Sbjct: 191 FTDGLRACEPSAGLYTFWDYQAGCWPRNFGIRIDHLLLSPQAADRLVSASVQKHLRGLEK 250
Query: 108 LSTHCPLTIEYD 119
S H P+T+E
Sbjct: 251 PSDHVPVTVELS 262
>gi|89093141|ref|ZP_01166091.1| Exonuclease III [Oceanospirillum sp. MED92]
gi|89082437|gb|EAR61659.1| Exonuclease III [Oceanospirillum sp. MED92]
Length = 271
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 13/138 (9%), Positives = 24/138 (17%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ ++ V+ GD N
Sbjct: 133 LQAHLEEHCSADQNIVVMGDLNISPEDKDIGIGEPNRKRWLKTGKASFQPEEREWYAKLT 192
Query: 45 KMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
+++ R++ L+
Sbjct: 193 GWGLTDSFRHLNPDEDQVFSWFDYRSRGFEAEPRRGLRIDGILLTAPLLEKCADAGVDYE 252
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ E D
Sbjct: 253 LRGMEKPSDHAPIWTELD 270
>gi|157828881|ref|YP_001495123.1| exodeoxyribonuclease III [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933608|ref|YP_001650397.1| exodeoxyribonuclease III [Rickettsia rickettsii str. Iowa]
gi|157801362|gb|ABV76615.1| exodeoxyribonuclease III [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908695|gb|ABY72991.1| exodeoxyribonuclease III [Rickettsia rickettsii str. Iowa]
Length = 260
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 28/126 (22%), Gaps = 18/126 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD--GLL 52
+ K +I GDFN I ++ L
Sbjct: 133 NYLSTKKSFDEKTIIGGDFNIAPFDIDVYSPKLLAETTCFTEVEQKKLRTILNSGFEDLY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
K+ R + + D + + + + K S H
Sbjct: 193 RLMHPSKQEFSWWDYRARCFEQNKGMRIDMILGCNNTIDYLENCYMDYNLRTQEKPSDHI 252
Query: 113 PLTIEY 118
P+ +
Sbjct: 253 PVIASF 258
>gi|229587031|ref|YP_002845532.1| Exodeoxyribonuclease III [Rickettsia africae ESF-5]
gi|228022081|gb|ACP53789.1| Exodeoxyribonuclease III [Rickettsia africae ESF-5]
Length = 260
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 27/126 (21%), Gaps = 18/126 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD--GLL 52
+ K +I GDFN I ++ L
Sbjct: 133 NYLSTKKSFDEKTIIGGDFNIAPFDIDVYSPKLLTETTCFTEVEQKKLRTILNSGFEDLY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
K+ R + D + + + + K S H
Sbjct: 193 RLMHPSKQEFSWWDYRAGCFEQNKGMRIDMVLGCNNTIDYLENCYMDYNLRTQEKPSDHI 252
Query: 113 PLTIEY 118
P+ +
Sbjct: 253 PVIASF 258
>gi|282880102|ref|ZP_06288822.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
gi|281305975|gb|EFA98015.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
Length = 249
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 29/127 (22%), Gaps = 23/127 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + Q + P +I GD N I + K +
Sbjct: 127 RAYITQ-LDQIKPVIICGDLNVAHEEIDLKNPKTNKRNAGFTDEERNKMTRLLDNGFIDT 185
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E+ + R ++ D + S H
Sbjct: 186 FRYLYPEQITYSWWSYRFRAREKNAGWRIDYFLISERLKERLHDAKIHTEIMG----SDH 241
Query: 112 CPLTIEY 118
CP+ +E
Sbjct: 242 CPVELEL 248
>gi|239947023|ref|ZP_04698776.1| exodeoxyribonuclease III [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921299|gb|EER21323.1| exodeoxyribonuclease III [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 262
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 27/126 (21%), Gaps = 18/126 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD--GLL 52
+ K +I GDFN I ++ L
Sbjct: 133 NYLSTKKSFDEKTIIGGDFNIAPFDIDVYSPKLLAETTCFTEIEQKKLRTILNSGFEDLY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
K+ R + D + + + + K S H
Sbjct: 193 RLMHPSKQEFSWWDYRAGCFEQNKGMRIDMILGCNNTIDYLENCYMDYNLRTQEKPSDHI 252
Query: 113 PLTIEY 118
P+ +
Sbjct: 253 PVIASF 258
>gi|332141071|ref|YP_004426809.1| exodeoxyribonuclease III [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551093|gb|AEA97811.1| exodeoxyribonuclease III [Alteromonas macleodii str. 'Deep
ecotype']
Length = 269
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 33/137 (24%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------------DD 41
+ L + D+ ++ GD N + +
Sbjct: 131 KDLMTYLDENHTPEDNVIVMGDVNISHTDLDIGIGEENRKRWLRTGKCSFLPEEREWLNT 190
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ D P+ E R+K D + D ++V
Sbjct: 191 LFSWGFEDSFRTLNPETNERFSWFDYRSKGFNDNRGLRIDLILATKSLHSTLVDAGIDYE 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ EY
Sbjct: 251 LRGIEKPSDHAPIWAEY 267
>gi|329770281|ref|ZP_08261669.1| hypothetical protein HMPREF0433_01433 [Gemella sanguinis M325]
gi|328836839|gb|EGF86487.1| hypothetical protein HMPREF0433_01433 [Gemella sanguinis M325]
Length = 719
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ + +
Sbjct: 523 EQAKLLNAFVREGLRQNPNLKFVLTGDFNDFEFSDTVKTIVGNELVNLMAE---HEAGDR 579
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD ++ ++ K+ ++ + I + + S H P+ ++ DF
Sbjct: 580 YSYFYRGSNQSLDNILVSKNIKDRVLFSPVHI----NASFMEEHGRASDHDPVVVQIDFS 635
Query: 122 KG 123
K
Sbjct: 636 KS 637
>gi|300776438|ref|ZP_07086296.1| exodeoxyribonuclease III [Chryseobacterium gleum ATCC 35910]
gi|300501948|gb|EFK33088.1| exodeoxyribonuclease III [Chryseobacterium gleum ATCC 35910]
Length = 254
Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 31/128 (24%), Gaps = 23/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGL 51
++ K +I+GDFN +I + F + +
Sbjct: 130 EYIKNLKKEIPNLIISGDFNICHEAIDIHNPVGLKNVSGFLPMEREWMTNFINECELIDS 189
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F E ++ R S D + S H
Sbjct: 190 FRFFNNEPDNYTWWSYRQNSRERNKGWRLDYNFTSYSLKDKLSRAVILKEAV----HSDH 245
Query: 112 CPLTIEYD 119
CP +E D
Sbjct: 246 CPALVELD 253
>gi|312172585|emb|CBX80841.1| Exonuclease III [Erwinia amylovora ATCC BAA-2158]
Length = 301
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
L + +Q+ K +I GD N + + +
Sbjct: 163 RDLHSYLEQQQKPDNQLLIMGDMNISSGDLDIGIGEENRKRWLRTGKCSFLPEEREWMDK 222
Query: 45 KMDPDGLLIRFPQE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M+ + Q + R+K D + D + V+
Sbjct: 223 LMNWGLVDTWRAQHATINDRFSWFDYRSKGFDDNRGLRIDLVLASRPLADRCVATGIDYD 282
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ E+
Sbjct: 283 IRAMEKPSDHAPIWAEFS 300
>gi|291523803|emb|CBK89390.1| exodeoxyribonuclease III [Eubacterium rectale DSM 17629]
Length = 251
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+++ + P V+ GD N N I + + +
Sbjct: 127 REYLKA-LDAQKPVVLCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAKMTELLGSGFTDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + R K+ D + + S
Sbjct: 186 FRYFYPDAEGIYSWWSYRFKAREKNAGWRIDYFITSKRINDKLKKAAIHTDVLG----SD 241
Query: 111 HCPLTIEYDF 120
HCP+ ++ +F
Sbjct: 242 HCPVEVDIEF 251
>gi|328676925|gb|AEB27795.1| Exodeoxyribonuclease III [Francisella cf. novicida Fx1]
Length = 262
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 25/139 (17%)
Query: 6 GEWLKKW---ADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------- 42
++L+K+ +++++G F++ GDFN I +
Sbjct: 125 MQFLEKYKGILKEQVESGRDFIVCGDFNIVHKEIDIKNWKSNYGKTSGVLPEEQAWLDHI 184
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ + + R ++ + + + +SD
Sbjct: 185 FDNLGWVDTFRVINHQPLQYTWWSNRGQARANNVGW--RIDYHISTPAIKDKVVPESDYI 242
Query: 103 TRRSKLSTHCPLTIEYDFE 121
R + S H PLTI YDFE
Sbjct: 243 YRENWFSDHAPLTISYDFE 261
>gi|284042535|ref|YP_003392875.1| exodeoxyribonuclease III Xth [Conexibacter woesei DSM 14684]
gi|283946756|gb|ADB49500.1| exodeoxyribonuclease III Xth [Conexibacter woesei DSM 14684]
Length = 262
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 22/133 (16%)
Query: 7 EWLKKWADQKIKTGI----PFVIAGDFNRKINSIGDTDDFW------------------Q 44
+ + + + P V+AGD N + + D +
Sbjct: 128 DAMARRVGELRGDDAGAPLPLVVAGDMNVAPSDLDVYDPAVFATSTHTSAAERTALRAVE 187
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + + R + D D + + +
Sbjct: 188 QAGLLDAYRQLHPDDVGYTWWDYRQGHFHRGLGLRIDLILASPDLAERLTRVGIERDYRK 247
Query: 105 RSKLSTHCPLTIE 117
S+ S H PL +
Sbjct: 248 GSRPSDHVPLVAD 260
>gi|239916752|ref|YP_002956310.1| Exodeoxyribonuclease III [Micrococcus luteus NCTC 2665]
gi|281414790|ref|ZP_06246532.1| Exodeoxyribonuclease III [Micrococcus luteus NCTC 2665]
gi|239837959|gb|ACS29756.1| Exodeoxyribonuclease III [Micrococcus luteus NCTC 2665]
Length = 275
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 12/134 (8%), Positives = 31/134 (23%), Gaps = 22/134 (16%)
Query: 7 EWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDD--------------------FWQ 44
L++ A + +AGD+N D ++
Sbjct: 141 RVLQEHAAAHLAEDPDTRLALAGDWNIAPQDEDVWDIELFQREGYTHVSPAERAAFHAFE 200
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
++ + + D + + ++ + +
Sbjct: 201 DAGLVDVVRPRHPGPGVYTYWDYTGLAFPKKKGMRIDFQLCSPALARTVTDAWIEREERK 260
Query: 105 RSKLSTHCPLTIEY 118
S H P+ +E
Sbjct: 261 GKGASDHAPVVVEL 274
>gi|84684871|ref|ZP_01012771.1| exodeoxyribonuclease III [Maritimibacter alkaliphilus HTCC2654]
gi|84667206|gb|EAQ13676.1| exodeoxyribonuclease III [Rhodobacterales bacterium HTCC2654]
Length = 267
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E L+K A + + PF++AGD+N I FW+ +
Sbjct: 135 MERLEKRAKELLALEQPFLMAGDYNVIPQGIDALHPENWRDDALFQPESRGAFWRLQNLG 194
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + + + +FL+ + + R K
Sbjct: 195 LTEAFRARNQAAEQFTFWDFQRGAWQRNDGIRIDHFLLSPQCADLLEDCQIDKEVRGRDK 254
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 255 PSDHVPIWVEL 265
>gi|325578563|ref|ZP_08148663.1| exodeoxyribonuclease III [Haemophilus parainfluenzae ATCC 33392]
gi|325159799|gb|EGC71929.1| exodeoxyribonuclease III [Haemophilus parainfluenzae ATCC 33392]
Length = 267
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKEST---- 62
L+++ +Q P +I GD N + D+ ++ G P+E+E
Sbjct: 132 LQRYLEQDHDKANPVLIMGDMNISPTDLDIGIGDENRKRWLRTGKCSFLPEEREWYQRLY 191
Query: 63 -------------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ + V +
Sbjct: 192 DYGLEDTFRKLNPTVNDKFSWFDYRSKGFDDNRGLRIDHILVNHQLAERCVDVGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEF 266
>gi|256824430|ref|YP_003148390.1| Exodeoxyribonuclease III [Kytococcus sedentarius DSM 20547]
gi|256687823|gb|ACV05625.1| Exodeoxyribonuclease III [Kytococcus sedentarius DSM 20547]
Length = 281
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 29/130 (22%), Gaps = 17/130 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLI 53
L A +P + GDFN D +Q GL+
Sbjct: 143 LAGHAGTWAGEDLPLALVGDFNVAPLDTDVWDIAAFEGHTHVTEPERAAFQGFLDAGLVD 202
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTH 111
E + L F + + + S H
Sbjct: 203 VVRPHTEPDTFTYWDYQQLRFPKRQGMRIDFVLGSQPFADRVTGAFVDREERKGKGASDH 262
Query: 112 CPLTIEYDFE 121
P+ ++ +
Sbjct: 263 APVVVDLAID 272
>gi|167950326|ref|ZP_02537400.1| exonuclease III [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 272
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 31/135 (22%), Gaps = 27/135 (20%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGD---------------------TDDFWQKMDPDG 50
+ Q ++ GD N + ++ Q++ G
Sbjct: 137 YLQQHHSPDDNLLVIGDMNIAPLDLDIGIGPDNAKRWLKSGKCCFLPEEREWLQRLTDWG 196
Query: 51 LLIRFPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTR 104
L F R++ L S +
Sbjct: 197 LHDTFRGHYPEVDDRFSWFDYRSRGFDREPKRGLRIDLILASASLNAACSDAGIDYEIRG 256
Query: 105 RSKLSTHCPLTIEYD 119
K S HCP+ E+D
Sbjct: 257 MQKPSDHCPIWAEFD 271
>gi|154490204|ref|ZP_02030465.1| hypothetical protein PARMER_00436 [Parabacteroides merdae ATCC
43184]
gi|154089096|gb|EDN88140.1| hypothetical protein PARMER_00436 [Parabacteroides merdae ATCC
43184]
Length = 253
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 34/139 (24%), Gaps = 28/139 (20%)
Query: 3 SQQG---EWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q EWL+ + + K+ ++ GD+N I D +
Sbjct: 117 ERQAFKMEWLEDFQNYVVELQKSRPKLILCGDYNICHEPIDIHDPVRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+K+ R + ++ +
Sbjct: 177 WMTRFLDAGYIDTFRLLNPDKQEYTWWSYRFSARAKNKGW--RIDYCMVSEPMKAQ--VE 232
Query: 99 SDLDTRRSKLSTHCPLTIE 117
+ S HCP IE
Sbjct: 233 KAYILNEAVHSDHCPAVIE 251
>gi|91216089|ref|ZP_01253057.1| exodeoxyribonuclease [Psychroflexus torquis ATCC 700755]
gi|91185606|gb|EAS71981.1| exodeoxyribonuclease [Psychroflexus torquis ATCC 700755]
Length = 260
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 23/126 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLL 52
+ + K P VI GD+N +I D F +
Sbjct: 138 YIENLKKEIPPLVICGDYNICHEAIDIHDPVRLKTVSGFLPAEREWLSKFLKDSGFVDSF 197
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ ++ R + + L+ + + L +K S HC
Sbjct: 198 RKLNEDVVHYSWWSYRANARQNNKGW--RLDYLLVAQEIEDLVFRSVILP--DAKHSDHC 253
Query: 113 PLTIEY 118
P+ +E
Sbjct: 254 PVLLEL 259
>gi|317503938|ref|ZP_07961946.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
gi|315664964|gb|EFV04623.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
Length = 250
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 30/131 (22%), Gaps = 23/131 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + Q + P ++ GD N I + +
Sbjct: 124 DAFQAYLHQ-LDAKKPVIVCGDMNVAHQEIDLKNPKTNRRSAGFTDEERSKMTQLLSNGF 182
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
E+ + R ++ D +
Sbjct: 183 TDTFRTLHPEQITYSYWSYRFRAREKNAGWRIDYFLISDRLRPQLKGASIHTEIYG---- 238
Query: 109 STHCPLTIEYD 119
S HCP+ ++ D
Sbjct: 239 SDHCPVELDID 249
>gi|260061515|ref|YP_003194595.1| exodeoxyribonuclease [Robiginitalea biformata HTCC2501]
gi|88785647|gb|EAR16816.1| exodeoxyribonuclease [Robiginitalea biformata HTCC2501]
Length = 269
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 27/128 (21%), Gaps = 22/128 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + D + VI GD+N I D K
Sbjct: 143 QAYVDSLKREIPELVICGDYNICHRPIDIHDPVRNKNVSGFLPVEREWIGNFIDSGFIDS 202
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F + R + D + + S H
Sbjct: 203 FRHFNPDPHHYTWWTYRAGARAKNKGWRLDYGMVSRPLEDRLARSVILPEA----RHSDH 258
Query: 112 CPLTIEYD 119
CP+ +E
Sbjct: 259 CPIMLELS 266
>gi|330960959|gb|EGH61219.1| exonuclease III [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 270
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 31/144 (21%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ E L++ + + P ++ GD N
Sbjct: 127 QRFYEDLQQLLESRFSNEQPLIVMGDVNISPQDCDIGIGADNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVS 95
+ + E + R++ D + I +
Sbjct: 187 WMERLKNWGMVDSFRYLHPEVSDRFSWFDYRSRGFEDEPKRGLRIDLIMTSTGLQPRIKA 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 247 AGVDYDLRGMEKPSDHAPIWLELS 270
>gi|229817407|ref|ZP_04447689.1| hypothetical protein BIFANG_02669 [Bifidobacterium angulatum DSM
20098]
gi|229785196|gb|EEP21310.1| hypothetical protein BIFANG_02669 [Bifidobacterium angulatum DSM
20098]
Length = 297
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 45/140 (32%), Gaps = 24/140 (17%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------ 48
ML++ + + D+ G ++ GDFN S + +
Sbjct: 162 MLNR----MGELRDEAADGGRQALLCGDFNIAHTSADIKNAKANEKHAGFLPEERAYVDR 217
Query: 49 --------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
D + +R ++ + D + + + VS+D
Sbjct: 218 WLGEYGFVDVTRRLAGDIQGPYTWWSQRGRAFDNNVGWRLDYQFATPALAETAVSFDIDK 277
Query: 101 LDTRRSKLSTHCPLTIEYDF 120
+ ++ S H PLTI Y+F
Sbjct: 278 APSYDTRWSDHAPLTITYEF 297
>gi|329946194|ref|ZP_08293807.1| putative exodeoxyribonuclease III [Actinomyces sp. oral taxon 170
str. F0386]
gi|328527792|gb|EGF54783.1| putative exodeoxyribonuclease III [Actinomyces sp. oral taxon 170
str. F0386]
Length = 269
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 32/130 (24%), Gaps = 17/130 (13%)
Query: 7 EWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPD 49
L+ + + +P + GD+N D + +
Sbjct: 140 RALRDDVATWLRAEPDLPLALVGDWNVAPKDEDVWDMSVFEGATHVSAPEREAFAAFAET 199
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
G+ + + + + D + + + + S
Sbjct: 200 GMHEVTRERVTNYTYWDYQKLRFPRNEGMRIDFVYASQALADRVTGAAIDRNERKGKGAS 259
Query: 110 THCPLTIEYD 119
H P+ +E D
Sbjct: 260 DHVPVIVEVD 269
>gi|257437815|ref|ZP_05613570.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii A2-165]
gi|257199738|gb|EEU98022.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii A2-165]
Length = 263
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 32/132 (24%), Gaps = 23/132 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P ++ GD N I + +M
Sbjct: 137 DAFRAYLLE-LDAKKPVILCGDLNVAHTEIDIKNAKTNRMSAGFTDQERAKMTELLAAGF 195
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + D + + + + +
Sbjct: 196 TDTFRAVHPDEVKYSWWSYRFHAREKNAGWRIDYFIVSNRIADKVTAAEIHNEVFG---- 251
Query: 109 STHCPLTIEYDF 120
S HCP+ + D
Sbjct: 252 SDHCPVELVIDL 263
>gi|256028521|ref|ZP_05442355.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
gi|289766441|ref|ZP_06525819.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
gi|289717996|gb|EFD82008.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
Length = 253
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 37/135 (27%), Gaps = 24/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ +K+ ++ P V+ GD N I + + +
Sbjct: 124 DEFRKYLK-NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLDSGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ R ++ + D ++V +
Sbjct: 183 IDTFRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQIEG--- 239
Query: 108 LSTHCPLTIEYDFEK 122
S HCP+ + + +K
Sbjct: 240 -SDHCPVVLFLNLDK 253
>gi|254561142|ref|YP_003068237.1| exodeoxyribonuclease III [Methylobacterium extorquens DM4]
gi|254268420|emb|CAX24377.1| Exodeoxyribonuclease III (Exonuclease III) (EXO III) (AP
endonuclease VI) [Methylobacterium extorquens DM4]
Length = 264
Score = 66.8 bits (161), Expect = 9e-10, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
L+ A + T V+AGDFN D ++ + +G
Sbjct: 131 MARLRTHARALMTTEEALVLAGDFNVIPEPEDAADPTAWTQDALFLPETRRAFRALVAEG 190
Query: 51 LLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ S + I D+ + +VS K
Sbjct: 191 FTDGLRACEPSAGLYTFWDYQAGCWPRNQGIRIDHLLLSPQAADRLVSASVQRHLRGLEK 250
Query: 108 LSTHCPLTIEYD 119
S H P+T+E
Sbjct: 251 PSDHVPVTVELS 262
>gi|315606307|ref|ZP_07881323.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
gi|315251998|gb|EFU31971.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
Length = 249
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 27/122 (22%), Gaps = 22/122 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
Q + P ++ GD N I + + +
Sbjct: 131 QGLDAKKPVIVCGDLNVAHEEIDLKNPKTNRRNAGFTDEEREKMTITLNSGFTDSFRYKY 190
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
E+ + R + D +V S HCP+ +
Sbjct: 191 PEQVTYSWWSYRFHAREKNAGWRIDYFLISNRLRDRLVDAKIHTE----VYGSDHCPVEL 246
Query: 117 EY 118
+
Sbjct: 247 DL 248
>gi|320094719|ref|ZP_08026473.1| exodeoxyribonuclease III [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319978361|gb|EFW09950.1| exodeoxyribonuclease III [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 274
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 30/131 (22%), Gaps = 20/131 (15%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKM 46
L Q + W D + GD+N D + +
Sbjct: 147 LRAQA---RGWLDA--DPAALVALVGDWNVAPQDQDVWDMAAFEGATHVSAPEREAFAAF 201
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
DG + + + + D I S + +
Sbjct: 202 AEDGWIEATRARTTNYTYWDYQRLRFPKNEGMRIDFAYASPALEARITSARIDRDERKGK 261
Query: 107 KLSTHCPLTIE 117
S H P+ ++
Sbjct: 262 GASDHVPVILD 272
>gi|307946864|ref|ZP_07662199.1| exodeoxyribonuclease III [Roseibium sp. TrichSKD4]
gi|307770528|gb|EFO29754.1| exodeoxyribonuclease III [Roseibium sp. TrichSKD4]
Length = 260
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 37/131 (28%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
+ L A +++ IP+++ GD+N + + + ++ + G
Sbjct: 128 MDRLIAHAKRRLDDEIPYLLLGDYNVIPDPMDAKNPENWGNDALFQPESRQKFRTLTHLG 187
Query: 51 LLIRFPQEKEST-CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
++ ++ + L+ S + K
Sbjct: 188 FTEAVRACTDAPETFTFWDYQAGAWQKNNGIRIDHILLSPQASDLMAGCGIDKHVRGWEK 247
Query: 108 LSTHCPLTIEY 118
S H P+ +
Sbjct: 248 PSDHVPVWVNL 258
>gi|296446338|ref|ZP_06888283.1| exodeoxyribonuclease III Xth [Methylosinus trichosporium OB3b]
gi|296256111|gb|EFH03193.1| exodeoxyribonuclease III Xth [Methylosinus trichosporium OB3b]
Length = 258
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 36/129 (27%), Gaps = 18/129 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLI 53
L A + P V+AGD+N + D +Q++ G
Sbjct: 130 LIAHAASLLALEEPVVLAGDYNVIPAARDVHDPAAWAGDALFLPQTRAKFQELTNLGYTE 189
Query: 54 RFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ + + I D+ + + S +K S
Sbjct: 190 ALRATTDAAGLYTFWDYQAGAWQRNKGIRIDHLLLSPQAADRLQSVTIDKNLRAGAKPSD 249
Query: 111 HCPLTIEYD 119
H P+ E +
Sbjct: 250 HVPIRCELE 258
>gi|295699065|ref|YP_003606958.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1002]
gi|295438278|gb|ADG17447.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1002]
Length = 269
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 37/133 (27%), Gaps = 18/133 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLI 53
L A Q ++G P VIAGDFN + ++K+ G
Sbjct: 131 LIAHAAQLYESGHPVVIAGDFNVVPTDEDIYNPRSWLKDALLQPESRERYRKLLAQGWTD 190
Query: 54 RFPQ---EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ + + D+ D + + + S
Sbjct: 191 ALRTHFGDERVYTFWDYFRRHWDTNSGLRIDHLLLSADLAPRLRNAGVDRWVCGEPHASD 250
Query: 111 HCPLTIEYDFEKG 123
H P IE + G
Sbjct: 251 HAPTWIELEMGAG 263
>gi|269957862|ref|YP_003327651.1| 5'-Nucleotidase domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269306543|gb|ACZ32093.1| 5'-Nucleotidase domain protein [Xylanimonas cellulosilytica DSM
15894]
Length = 1577
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 38/135 (28%), Gaps = 18/135 (13%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L+ W D+ + G + GDFN + D D +
Sbjct: 704 RQATALRDWVDEVTEPGEAVALIGDFNAYTHE----DPLQVLYDAGYTDAASTLSSDQWS 759
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------------LS 109
SLD+ +++ ++ D+S S
Sbjct: 760 YSFGGLSGSLDHVLLNGPATERATGADVWEINADESIALQYSRYNYHGTLFHAPDQFASS 819
Query: 110 THCPLTIEYDFEKGN 124
H P+ + ++ N
Sbjct: 820 DHNPVVVGLTADEDN 834
>gi|329964785|ref|ZP_08301808.1| exodeoxyribonuclease III [Bacteroides fluxus YIT 12057]
gi|328524636|gb|EGF51699.1| exodeoxyribonuclease III [Bacteroides fluxus YIT 12057]
Length = 254
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 36/140 (25%), Gaps = 28/140 (20%)
Query: 3 SQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q E +++ + +T ++ GD+N I D +
Sbjct: 117 ERQAFKMVWLEKFQEYVLELQRTRPKLILCGDYNICHEPIDIHDPIRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+K+ R S ++ + +
Sbjct: 177 WMTRFLNAGFIDSFRLLHPDKQEYTWWSYRFNSRAKNKGW--RIDYCMVSEPVRPMLKEA 234
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ S HCP+++E
Sbjct: 235 --QILNGAVHSDHCPMSLEI 252
>gi|121998516|ref|YP_001003303.1| endonuclease/exonuclease/phosphatase [Halorhodospira halophila SL1]
gi|121589921|gb|ABM62501.1| Endonuclease/exonuclease/phosphatase [Halorhodospira halophila SL1]
Length = 570
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 38/129 (29%), Gaps = 15/129 (11%)
Query: 4 QQGEWLKKWA---DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q E L ++ + +P +IAGD N ++
Sbjct: 441 EQAEALAEFLGRWRAERSEALPVLIAGDLNAYGGEDPARALAAAGKVDLLAEHLAWPDR- 499
Query: 61 STCNVIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQS--DLDTRRSKLST 110
V + LD+ ++ + + + +D + + S
Sbjct: 500 -YTYVFRGESGYLDHLQAHPALAERVAAVHRHPINADEPRFLEFDGDPGRVREDAYRSSD 558
Query: 111 HCPLTIEYD 119
H P+ ++ +
Sbjct: 559 HDPIAVDLE 567
>gi|332882499|ref|ZP_08450117.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332679559|gb|EGJ52538.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 255
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 32/126 (25%), Gaps = 22/126 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+K+ D+ +T VI GD+N +I D
Sbjct: 130 QKYIDKLKQTIPNLVICGDYNICHEAIDIHDPVRNATVSGFLPIEREWLDKFMKSGFIDS 189
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F +E R + + D + K S H
Sbjct: 190 FRYFHKEPHQYSWWSYRANARNNNKGWRIDYHLVSAPLENRMERALILPEA----KHSDH 245
Query: 112 CPLTIE 117
CP+ +E
Sbjct: 246 CPIVLE 251
>gi|153812982|ref|ZP_01965650.1| hypothetical protein RUMOBE_03389 [Ruminococcus obeum ATCC 29174]
gi|149830929|gb|EDM86019.1| hypothetical protein RUMOBE_03389 [Ruminococcus obeum ATCC 29174]
Length = 252
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 34/137 (24%), Gaps = 25/137 (18%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
EW + + +K P + GD N I + + +
Sbjct: 120 MEWERDFLAYLLKLQESKPVICCGDLNVAHEEIDLKNPKTNRKNAGFTDEERACFTKVLE 179
Query: 50 ----GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
F + + R K+ F+ S Q
Sbjct: 180 SGFIDTFRYFYPDKEGIYSWWSYRFKAREKNAGW--RIDYFITSPSLKEKL--QGAAIHT 235
Query: 105 RSKLSTHCPLTIEYDFE 121
S HCP+ ++ D +
Sbjct: 236 EIMGSDHCPIELDIDLK 252
>gi|150399093|ref|YP_001322860.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
gi|150011796|gb|ABR54248.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
Length = 257
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 33/136 (24%), Gaps = 25/136 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------ 49
+Q +W K + + + ++ P + GD N I + +
Sbjct: 127 RQ-KWDKDFLNHLKTLEQKKPVIFCGDLNVAHKEIDLKNPKQNIKNAGFTKEERNGFDNL 185
Query: 50 ------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
E E+ R + F I +
Sbjct: 186 INSGFLDTFRELNNEPENYTWWSYRFNAREKNIGW--RIDYFCISKKLRE--RLKDAFIM 241
Query: 104 RRSKLSTHCPLTIEYD 119
S HCP+ I +
Sbjct: 242 SEVLGSDHCPVGIIIE 257
>gi|67458642|ref|YP_246266.1| exodeoxyribonuclease III [Rickettsia felis URRWXCal2]
gi|67004175|gb|AAY61101.1| Exodeoxyribonuclease III [Rickettsia felis URRWXCal2]
Length = 260
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 27/126 (21%), Gaps = 18/126 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------QKMDPD--GLL 52
+ K +I GDFN I ++ L
Sbjct: 133 NYLSTKKSFDEKTIIGGDFNIAPFDIDVYSPKALAETTCFTEIEQKKLRTILNSGFEDLY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
K+ R + D + + + + K S H
Sbjct: 193 RLRHPSKQEFSWWDYRAGCFEQNKGMRIDMILGCNNTIDYLENCYMDYNLRTQEKPSDHI 252
Query: 113 PLTIEY 118
P+ +
Sbjct: 253 PVIASF 258
>gi|88798725|ref|ZP_01114308.1| exodeoxyribonuclease III [Reinekea sp. MED297]
gi|88778488|gb|EAR09680.1| exodeoxyribonuclease III [Reinekea sp. MED297]
Length = 274
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 30/140 (21%), Gaps = 27/140 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L W + K ++ GDFN + +
Sbjct: 133 LLTWLETHAKPDDLLIVLGDFNIAPVDEDIGIGEKNAKRWLREGKSAFLPEEREWFEKLR 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDL 101
+ E R+K D + +I + S
Sbjct: 193 AWGLVDSYRHLYPDSTELFSWFDYRSKGFDDDPKRGLRIDHLMITEPLVPLIQSAGIDYH 252
Query: 102 DTRRSKLSTHCPLTIEYDFE 121
K S H P +E D
Sbjct: 253 IRGMDKPSDHAPAWLELDLP 272
>gi|19703399|ref|NP_602961.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296328758|ref|ZP_06871272.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19713467|gb|AAL94260.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296154093|gb|EFG94897.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 253
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 24/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ +K+ ++ P V+ GD N I + + +
Sbjct: 124 DEFRKYLK-NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLDSGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ R ++ + D S+V +
Sbjct: 183 IDTFRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKSLVDAEIHSQIEG--- 239
Query: 108 LSTHCPLTIEYDFEK 122
S HCP+ + +F K
Sbjct: 240 -SDHCPVVLFLEFNK 253
>gi|326390442|ref|ZP_08212000.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|325993560|gb|EGD51994.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
Length = 257
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 31/123 (25%), Gaps = 23/123 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ + P ++ GD N I + + + F
Sbjct: 135 KLDSVKPIILCGDLNVAHKEIDIKNPSANRRNAGFTDEEREKMTMLLNSGFIDTFRYFYP 194
Query: 58 EKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
K+ + + F++ + Y S HCP+ +
Sbjct: 195 HKKDAYTWWSYMRNAREKNIGW--RIDYFIVSQ--RLKDYLIDAEIHSDVMGSDHCPVVL 250
Query: 117 EYD 119
E D
Sbjct: 251 EID 253
>gi|16126254|ref|NP_420818.1| exodeoxyribonuclease III [Caulobacter crescentus CB15]
gi|221235027|ref|YP_002517463.1| exodeoxyribonuclease III [Caulobacter crescentus NA1000]
gi|13423482|gb|AAK23986.1| exodeoxyribonuclease III [Caulobacter crescentus CB15]
gi|220964199|gb|ACL95555.1| exodeoxyribonuclease III [Caulobacter crescentus NA1000]
Length = 262
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 31/132 (23%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMD 47
L A + P VIAGD+N + + +
Sbjct: 130 MRRLHAHAQGLLAFEEPLVIAGDYNVIPEVEDVANPQAWLGDALFQPESRAAFRALKNLG 189
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
++ + + I D+ + + + + K
Sbjct: 190 FADAYMQADGAPGGYTFWDYQAGAWQRNLGIRIDHLLLSPQAADRLTGLVIHRDERDKEK 249
Query: 108 LSTHCPLTIEYD 119
S H P+ +
Sbjct: 250 PSDHVPVVGRFR 261
>gi|302541699|ref|ZP_07294041.1| exodeoxyribonuclease III [Streptomyces hygroscopicus ATCC 53653]
gi|302459317|gb|EFL22410.1| exodeoxyribonuclease III [Streptomyces himastatinicus ATCC 53653]
Length = 259
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 32/127 (25%), Gaps = 18/127 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFWQKMDPDG 50
L++ + K PF + GDFN D +
Sbjct: 130 LREAVGEDAKGPRPFAVLGDFNVAPTDDDVWDRTRFDGLTHVTDKEREALAALRGAGLSD 189
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ R + R + D + ++ + + S
Sbjct: 190 VVPRPLKYDHPFTYWDYRELCFPKNRGMRIDLVYGNGAFADAVGDAYVDREERKGKGASD 249
Query: 111 HCPLTIE 117
H P+ ++
Sbjct: 250 HAPVVVD 256
>gi|325660677|ref|ZP_08149307.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
gi|325473038|gb|EGC76246.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
Length = 250
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 34/135 (25%), Gaps = 25/135 (18%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+W ++ +K++ P + GD N I + + +
Sbjct: 120 MQWETEFLKYLKKLEAKKPVIFCGDLNVAHREIDLKNPKTNRKNAGFTDEERGKFTELLS 179
Query: 50 ----GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
F E+E R + D +
Sbjct: 180 AGFIDTFRYFYPEQEGIYSWWSYRFSARAKNAGWRIDYFCVSECLKDRLRDAKILT---- 235
Query: 105 RSKLSTHCPLTIEYD 119
S HCP+ ++++
Sbjct: 236 DVMGSDHCPVELDFE 250
>gi|294083994|ref|YP_003550751.1| exodeoxyribonuclease III [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663566|gb|ADE38667.1| exodeoxyribonuclease III [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 256
Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 32/132 (24%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
L A + + T +P V+ GD+N + D F++ +
Sbjct: 124 MARLYDRAVELLATEMPVVLGGDYNVLPQDVDCYDPAAWVGDALTHDDSRAAFFKILHAG 183
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ ++ + L+ + K
Sbjct: 184 YMDALRALHPSGVHYTYWDYQAGAWQRDNGLRIDHLLLSPEAGDRLTDVGIDRAPRGLEK 243
Query: 108 LSTHCPLTIEYD 119
S H P+ +
Sbjct: 244 PSDHTPIWCQLR 255
>gi|331085596|ref|ZP_08334680.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330407483|gb|EGG86985.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 250
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 34/135 (25%), Gaps = 25/135 (18%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+W ++ +K++ P + GD N I + + +
Sbjct: 120 MQWETEFLKYLKKLEAKKPVIFCGDLNVAHREIDLKNPKTNQKNAGFTDEERGKFTELLS 179
Query: 50 ----GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
F E+E R + D +
Sbjct: 180 AGFIDTFRYFYPEQEGIYSWWSYRFSARAKNAGWRIDYFCVSECLKDRLRDAKILT---- 235
Query: 105 RSKLSTHCPLTIEYD 119
S HCP+ ++++
Sbjct: 236 DVMGSDHCPVELDFE 250
>gi|313676472|ref|YP_004054468.1| exodeoxyribonuclease iii [Marivirga tractuosa DSM 4126]
gi|312943170|gb|ADR22360.1| exodeoxyribonuclease III [Marivirga tractuosa DSM 4126]
Length = 255
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 37/135 (27%), Gaps = 25/135 (18%)
Query: 6 GEWL---KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------- 49
+WL + + + +I GD+N +I D K
Sbjct: 123 MQWLSDFRAYIQDLKQEIPNLLICGDYNICHQAIDIHDPVRNKNSSGFLPEEREWMTDFL 182
Query: 50 -----GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+E + R+ + D + + + D +
Sbjct: 183 NDGFIDSFRHLNKEPDQYSWWSYRSAARERNKGWRIDYHMISENLKNQLKAADI----LQ 238
Query: 105 RSKLSTHCPLTIEYD 119
K S HCP+ +E D
Sbjct: 239 DVKHSDHCPIKVELD 253
>gi|284993327|ref|YP_003411882.1| exodeoxyribonuclease III Xth [Geodermatophilus obscurus DSM 43160]
gi|284066573|gb|ADB77511.1| exodeoxyribonuclease III Xth [Geodermatophilus obscurus DSM 43160]
Length = 264
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 11/129 (8%), Positives = 26/129 (20%), Gaps = 20/129 (15%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGLL 52
W + G + GD+N D ++ + G
Sbjct: 136 AAAGWLAE--DGGAQVALVGDWNIAPQDDDVWDVRVFAHSTHVSEPERAAFRAIVDAGYA 193
Query: 53 IRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ D + + + + + S
Sbjct: 194 DVVRPHTPGPGVFTYWDYTQLRFARREGMRIDFVLGSPALAVRVTNALIDRQERKGKGAS 253
Query: 110 THCPLTIEY 118
H P+ ++
Sbjct: 254 DHAPVVVDL 262
>gi|157826086|ref|YP_001493806.1| exodeoxyribonuclease III [Rickettsia akari str. Hartford]
gi|157800044|gb|ABV75298.1| Exodeoxyribonuclease III [Rickettsia akari str. Hartford]
Length = 260
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 27/126 (21%), Gaps = 18/126 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD--GLL 52
+ K +I GD N I ++ L
Sbjct: 133 NYLSTKKSFDEKTIIGGDLNIAPFDIDVYSPKILSETTCFTEVEQKKLRTILNAGFEDLY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
K++ R + D + + + + K S H
Sbjct: 193 RLMHPSKQAFSWWDYRAGCFEQNKGMRIDMILGCNNTIDYLENCYMDYNLRTQEKPSDHI 252
Query: 113 PLTIEY 118
P+ +
Sbjct: 253 PVIASF 258
>gi|307726281|ref|YP_003909494.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1003]
gi|307586806|gb|ADN60203.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1003]
Length = 269
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLL- 52
L + A +K+G P V+AGDFN + +Q++ G
Sbjct: 131 LIEHAANLLKSGHPVVLAGDFNVVPTDEDIYNPRSWLKDALLQPESRERYQRLLAQGWTD 190
Query: 53 --IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ ++ + + D+ + + + + S
Sbjct: 191 SLRKHFGDERVYTFWDYFRRHWDTNSGLRIDHILLSPELAPRLRDAGVDRWVRGEAHASD 250
Query: 111 HCPLTIEYDFE 121
H P +E D
Sbjct: 251 HAPTWVELDMS 261
>gi|319902391|ref|YP_004162119.1| exodeoxyribonuclease III Xth [Bacteroides helcogenes P 36-108]
gi|319417422|gb|ADV44533.1| exodeoxyribonuclease III Xth [Bacteroides helcogenes P 36-108]
Length = 267
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 33/140 (23%), Gaps = 28/140 (20%)
Query: 3 SQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q E +++ + +T ++ GD+N I D +
Sbjct: 130 ERQAFKMVWLEKFQEYVLELQRTRPKLILCGDYNICHEPIDIHDPIRNATNSGFLPEERE 189
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+K+ R S D +
Sbjct: 190 WMTRFLDAGFTDSFRFLHPDKQEYTWWSYRFNSRARNKGWRIDYCMVNEPVRPMLKDARI 249
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ S HCP+ +E
Sbjct: 250 LNDAV----HSDHCPMLLEI 265
>gi|255536406|ref|YP_003096777.1| hypothetical protein FIC_02282 [Flavobacteriaceae bacterium
3519-10]
gi|255342602|gb|ACU08715.1| hypothetical protein FIC_02282 [Flavobacteriaceae bacterium
3519-10]
Length = 302
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 29/118 (24%), Gaps = 6/118 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + +P ++ GDFN + + + + + S
Sbjct: 191 EKSAALILSKIKELNTKNLPVILTGDFNLTDKTTP-----MKILSENLSDTYRNCAQPSY 245
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + I + +D S H P+ E F
Sbjct: 246 G-PTGTFTAFDVNKIPTERIDYIFIKHLKCKSHRTINDRRENLLYPSDHFPVMAELKF 302
>gi|20090923|ref|NP_616998.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina
acetivorans C2A]
gi|19916002|gb|AAM05478.1| DNA-(apurinic or apyrimidinic site) lyase [Methanosarcina
acetivorans C2A]
Length = 260
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 32/133 (24%), Gaps = 22/133 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD- 49
+ +A+ G VI GD N I + D
Sbjct: 131 DAFLDYANALKAEGKKLVICGDVNTAHREIDLARPKENETTSGFLPEERAWMDKFFDAGY 190
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F E + R ++ F + +
Sbjct: 191 LDTFRLFNSEGGNYSWWSLRTRARERNVGW--RLDYFFVSENLRDNVKAAPIYP--EITG 246
Query: 109 STHCPLTIEYDFE 121
S HCP+ +E +F+
Sbjct: 247 SDHCPVGLELEFQ 259
>gi|308187049|ref|YP_003931180.1| Exonuclease III [Pantoea vagans C9-1]
gi|308057559|gb|ADO09731.1| Exonuclease III [Pantoea vagans C9-1]
Length = 272
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 32/139 (23%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
L++ + P ++ GD N + + +
Sbjct: 134 RDLQRLLTDDLPADKPVLVMGDMNISSTDLDIGIGEESRKRWLRTGKCSFLPEEREWMDR 193
Query: 45 KMDPDGLLIRFPQEK---ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + + R+K D + D + + V
Sbjct: 194 LLGWGLVDTWREHNPEVADRFSWFDYRSKGFDDNRGLRIDLVLASKNLAAHCVESGIDYE 253
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ + F
Sbjct: 254 IRGMEKPSDHAPIWSTFRF 272
>gi|183980766|ref|YP_001849057.1| exodeoxyribonuclease III protein XthA [Mycobacterium marinum M]
gi|183174092|gb|ACC39202.1| exodeoxyribonuclease III protein XthA [Mycobacterium marinum M]
Length = 276
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 27/134 (20%), Gaps = 24/134 (17%)
Query: 8 WLKK----WADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDP 48
L+ W G P +AGDFN + +
Sbjct: 140 ALRDTAQCWLK--NDPGAPIALAGDFNIAPTDEDVWSTEFFTGATHVSEPERKAFNAIVD 197
Query: 49 DGLLIR---FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
F + D + +V + +
Sbjct: 198 AQFTDLVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAGRVVDAQIVRDERKG 257
Query: 106 SKLSTHCPLTIEYD 119
S H P+ ++
Sbjct: 258 KAPSDHAPVFVDLR 271
>gi|327333158|gb|EGE74885.1| exodeoxyribonuclease III [Propionibacterium acnes HL097PA1]
Length = 297
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 38/132 (28%), Gaps = 20/132 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + + G F++ GDFN + + + +
Sbjct: 166 LVRRRQECTAQGRHFLVMGDFNIAHENADLKNWKANQRNEGFLPEERQWFDTILSPDTLI 225
Query: 50 GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + R K+ ++ D + + ++ + + +
Sbjct: 226 DVVRAQHPDTNGPYSWWSWRGKAFVNDAGWRIDYHLASPELASKAITAEIDRDPSYSERT 285
Query: 109 STHCPLTIEYDF 120
S H + ++YD
Sbjct: 286 SDHAAVVVDYDL 297
>gi|313204342|ref|YP_004042999.1| exodeoxyribonuclease iii xth [Paludibacter propionicigenes WB4]
gi|312443658|gb|ADQ80014.1| exodeoxyribonuclease III Xth [Paludibacter propionicigenes WB4]
Length = 253
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 33/141 (23%), Gaps = 28/141 (19%)
Query: 3 SQQG---EWLKKW---ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q ++L + + KT V+ GD+N I Q
Sbjct: 117 ERQAFKMQFLAAFGPFILELRKTRPNLVVCGDYNICHKPIDINHPERQNGVSGFLPEERA 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
F + E R + D + S
Sbjct: 177 WLDQFELDGMVDSFRVFDKSAEKYSWWSYRGGARFRNVGWRIDYHWVTESLHTRLKSAAI 236
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
S HCP+ +E +
Sbjct: 237 LTDAV----HSDHCPVAVELN 253
>gi|288927024|ref|ZP_06420917.1| exodeoxyribonuclease III [Prevotella buccae D17]
gi|288336198|gb|EFC74586.1| exodeoxyribonuclease III [Prevotella buccae D17]
Length = 249
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 27/122 (22%), Gaps = 22/122 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
Q + P ++ GD N I + + +
Sbjct: 131 QGLDAKKPVIVCGDLNVAHEEIDLKNPKTNRRNAGFTDEEREKMTITLNSGFTDSFRYKY 190
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
E+ + R + D +V S HCP+ +
Sbjct: 191 PEQVTYSWWSYRFHAREKNAGWRIDYFLISNRLRDRLVDAKIHTE----VYGSDHCPVEL 246
Query: 117 EY 118
+
Sbjct: 247 DL 248
>gi|114570470|ref|YP_757150.1| exodeoxyribonuclease III [Maricaulis maris MCS10]
gi|114340932|gb|ABI66212.1| Exodeoxyribonuclease III [Maricaulis maris MCS10]
Length = 262
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 35/133 (26%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDG 50
E L++ A + P ++AGD+N D ++ + G
Sbjct: 130 MERLRRHAQNLLTFEEPLILAGDYNCIPRDSDCWDIAEWESDALALPQTRAAFRALKWLG 189
Query: 51 LLIRFPQEKESTC-NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
L F Q ++ + L + + + K
Sbjct: 190 LTEAFEQLDGRGHQYTFYDYQAGRWNKGHGIRIDHLLCSPQAADHLEGIEIHTKTRGKEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +
Sbjct: 250 ASDHIPIVGSFSL 262
>gi|15889021|ref|NP_354702.1| exonuclease III [Agrobacterium tumefaciens str. C58]
gi|15156812|gb|AAK87487.1| exonuclease III [Agrobacterium tumefaciens str. C58]
Length = 265
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 18/134 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E L+++A+ ++ P ++AGD+N D F + +
Sbjct: 129 MERLRRFAEDRLAMEEPLILAGDYNVIPEPFDCHDPRVWEGDALFLPKTRAAFRKLENLG 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ ++ + ++ + S + K
Sbjct: 189 FTDAARATTDAAGLYSFWDYQAGAWPKNNGIRIDHLMLSAEAADRLQSVEIEKHVRAWEK 248
Query: 108 LSTHCPLTIEYDFE 121
S H P+ +DF
Sbjct: 249 PSDHVPVCGYFDFS 262
>gi|240949558|ref|ZP_04753897.1| exonuclease III [Actinobacillus minor NM305]
gi|257465617|ref|ZP_05629988.1| exonuclease III [Actinobacillus minor 202]
gi|240295999|gb|EER46665.1| exonuclease III [Actinobacillus minor NM305]
gi|257451277|gb|EEV25320.1| exonuclease III [Actinobacillus minor 202]
Length = 267
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 38/135 (28%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKES----- 61
L+ + + ++K P +I GD N + + ++ DG P+E+E
Sbjct: 132 LQHYLENQLKPENPIIIMGDMNISPTDLDIGIGEANRKRWLRDGKCSFLPEEREWLDRLY 191
Query: 62 ------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D + V
Sbjct: 192 GYGLVDTFRAMNPLAADKFSWFDYRSKGFDDNRGLRIDLVLASKSLAERCVETGIDLEIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 252 AMEKPSDHSPVWAVF 266
>gi|288960179|ref|YP_003450519.1| exodeoxyribonuclease III [Azospirillum sp. B510]
gi|288912487|dbj|BAI73975.1| exodeoxyribonuclease III [Azospirillum sp. B510]
Length = 257
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 29/132 (21%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMD 47
+ L A + IP V+ GD+N + +
Sbjct: 124 MDRLYDHARGLLAREIPVVLGGDYNIIPEARDVFSPQAFAGDALFQPESRAKFRALLNLG 183
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + + D+ + + K
Sbjct: 184 LTEAYRALHDDDRAYTFWDYQAGCWPRDNGLRIDHFLLSPQAADRLAGCRIDRGPRGLEK 243
Query: 108 LSTHCPLTIEYD 119
S H P+ ++
Sbjct: 244 ASDHTPVVLDLR 255
>gi|119713777|gb|ABL97825.1| hypothetical protein ALOHA_HF1049E08.0013 [uncultured marine
bacterium HF10_49E08]
Length = 255
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 11/119 (9%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR--FPQEKE 60
Q LKK Q++K + ++ GDFN + +S K+ + +E+
Sbjct: 143 KQAARLLKKRI-QELKGNVRVIVTGDFNAREDSDPYLGLVDGKILDTYRMAHKSRTEEES 201
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ R + L +F ++S + + S H P+T
Sbjct: 202 TLSGWNGRTSGN--------RIDWVLCTRNFRVLSANIDRSEFGGRYPSDHYPVTATLR 252
>gi|332672018|ref|YP_004455026.1| exodeoxyribonuclease III Xth [Cellulomonas fimi ATCC 484]
gi|332341056|gb|AEE47639.1| exodeoxyribonuclease III Xth [Cellulomonas fimi ATCC 484]
Length = 263
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 11/135 (8%), Positives = 31/135 (22%), Gaps = 20/135 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------ 43
L++ + + W + + GD+N D W
Sbjct: 129 LARLRDAAEGWL--VADPQLAAALVGDWNIAPLDTDVWDPAWFAGRTHVTPAERAAFTAI 186
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + + + + + D + + +
Sbjct: 187 AEAGWTEVSREHLPAEHTYTYWDYQRLRFPRNEGMRIDLTYATPALAARVRGAQIVRDER 246
Query: 104 RRSKLSTHCPLTIEY 118
+ S H P+ ++
Sbjct: 247 KGKAPSDHVPVVLDI 261
>gi|313794091|gb|EFS42113.1| exodeoxyribonuclease III [Propionibacterium acnes HL110PA1]
gi|315077107|gb|EFT49182.1| exodeoxyribonuclease III [Propionibacterium acnes HL053PA2]
gi|327451399|gb|EGE98053.1| exodeoxyribonuclease III [Propionibacterium acnes HL092PA1]
Length = 297
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 38/132 (28%), Gaps = 20/132 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + + G F++ GDFN + + + +
Sbjct: 166 LVRRRQECTTQGRHFLVMGDFNIAHENADLKNWKANQRNEGFLPEERQWFDTILSPDTLI 225
Query: 50 GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + R K+ ++ D + + ++ + + +
Sbjct: 226 DVVRAQHPDTNGPYSWWSWRGKAFVNDAGWRIDYHLASPELASKAITAEIDRDPSYSERT 285
Query: 109 STHCPLTIEYDF 120
S H + ++YD
Sbjct: 286 SDHAAVVVDYDL 297
>gi|260682949|ref|YP_003214234.1| putative exodeoxyribonuclease [Clostridium difficile CD196]
gi|260686547|ref|YP_003217680.1| putative exodeoxyribonuclease [Clostridium difficile R20291]
gi|260209112|emb|CBA62286.1| putative exodeoxyribonuclease [Clostridium difficile CD196]
gi|260212563|emb|CBE03542.1| putative exodeoxyribonuclease [Clostridium difficile R20291]
Length = 255
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 33/133 (24%), Gaps = 25/133 (18%)
Query: 7 EWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------------- 49
W + D K+ P ++ GD N I + +
Sbjct: 126 RWEDDFIDYLTKLDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKFSKLLDS 185
Query: 50 ---GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
F +KE R + + D +VS D
Sbjct: 186 GFIDTYRYFNPDKEGVYSWWSYRFNARKNNAGWRIDYFCASKKLEDRLVSADIHTEILG- 244
Query: 106 SKLSTHCPLTIEY 118
S HCP+ +E
Sbjct: 245 ---SDHCPVELEI 254
>gi|170692673|ref|ZP_02883835.1| exodeoxyribonuclease III Xth [Burkholderia graminis C4D1M]
gi|170142329|gb|EDT10495.1| exodeoxyribonuclease III Xth [Burkholderia graminis C4D1M]
Length = 268
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 35/131 (26%), Gaps = 18/131 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLI 53
L A +K+G P V+AGDFN + ++++ G
Sbjct: 131 LIDHAANLLKSGHPVVLAGDFNVVPTDEDIYNPRSWLKDALLQPESRERYRRLLAQGWTD 190
Query: 54 RFPQ---EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ + + D+ D + + S
Sbjct: 191 SLRTHFGDERVYTFWDYFRRHWDTNSGLRIDHILLSPDLAPRLRDAGVDRWVRGEPHASD 250
Query: 111 HCPLTIEYDFE 121
H P +E D
Sbjct: 251 HAPTWVELDMS 261
>gi|160889848|ref|ZP_02070851.1| hypothetical protein BACUNI_02279 [Bacteroides uniformis ATCC 8492]
gi|270294104|ref|ZP_06200306.1| exodeoxyribonuclease III [Bacteroides sp. D20]
gi|317478856|ref|ZP_07938007.1| exodeoxyribonuclease III [Bacteroides sp. 4_1_36]
gi|156860840|gb|EDO54271.1| hypothetical protein BACUNI_02279 [Bacteroides uniformis ATCC 8492]
gi|270275571|gb|EFA21431.1| exodeoxyribonuclease III [Bacteroides sp. D20]
gi|316905032|gb|EFV26835.1| exodeoxyribonuclease III [Bacteroides sp. 4_1_36]
Length = 254
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 35/140 (25%), Gaps = 28/140 (20%)
Query: 3 SQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q E +++ + +T ++ GD+N +I D +
Sbjct: 117 ERQAFKMVWLEKFQEYVLELERTRPKLILCGDYNICHEAIDIHDPIRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+K+ R S ++ + +
Sbjct: 177 WMTRFLNAGFIDSFRWLHPDKQEYTWWSYRFNSRAKNKGW--RIDYCMVSEPVRPMLKEA 234
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
S HCP+ +E
Sbjct: 235 --RILGDVVHSDHCPMLLEI 252
>gi|332024107|gb|EGI64323.1| Recombination repair protein 1 [Acromyrmex echinatior]
Length = 356
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 29/125 (23%), Gaps = 23/125 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+++ P +I GD N I + +
Sbjct: 236 EELDQKKPVIICGDMNVAHQEIDLKNPKTNTKNAGFTKEERNDMTDFLAAGFIDTFRSLY 295
Query: 57 QE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
E + + + FLI ++ + S HCP+
Sbjct: 296 PEIEGAYTFWSYFANARSKNIGW--RLDYFLISERIKNKVC--DNIIRKDVYGSDHCPVI 351
Query: 116 IEYDF 120
+ +
Sbjct: 352 LYINL 356
>gi|291617653|ref|YP_003520395.1| XthA [Pantoea ananatis LMG 20103]
gi|291152683|gb|ADD77267.1| XthA [Pantoea ananatis LMG 20103]
gi|327394080|dbj|BAK11502.1| exodeoxyribonuclease III XthA [Pantoea ananatis AJ13355]
Length = 268
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 32/139 (23%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
L+ + + P +I GD N + + +
Sbjct: 130 RDLQSYLSDSLAADKPVLIMGDMNISSTDLDIGIGEDSRKRWLRTGKCSFLPEEREWMDR 189
Query: 45 KMDPDGLLIRFPQEK---ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + Q + R+K D + D + +
Sbjct: 190 LLSWGLVDTWRAQNPEINDRFSWFDYRSKGFDDNRGLRIDLLLASTGLASHCIETGIDYE 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ + F
Sbjct: 250 IRGMEKPSDHAPVWSTFHF 268
>gi|258515007|ref|YP_003191229.1| exodeoxyribonuclease III [Desulfotomaculum acetoxidans DSM 771]
gi|257778712|gb|ACV62606.1| exodeoxyribonuclease III [Desulfotomaculum acetoxidans DSM 771]
Length = 259
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 31/133 (23%), Gaps = 19/133 (14%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMD 47
++ + + P + GDFN I D ++
Sbjct: 126 IRAMRDYFTRNFTPEQPVLWLGDFNVAPEPIDIHDPKRLLGHVGFHPEEHKVLAHVKEWG 185
Query: 48 PDGLLIRFPQEKESTCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ + E R + D+ + + +
Sbjct: 186 FQDIFRKHKPEGGHYTFWDYRVPRGVERNLGWRVDHIWGTRAIADRSMDSWVDIEPRKLE 245
Query: 107 KLSTHCPLTIEYD 119
K S H + E++
Sbjct: 246 KPSDHTFIMAEFN 258
>gi|261210504|ref|ZP_05924797.1| exodeoxyribonuclease III [Vibrio sp. RC341]
gi|260840289|gb|EEX66860.1| exodeoxyribonuclease III [Vibrio sp. RC341]
Length = 268
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 35/142 (24%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q L + + V+ GD N +
Sbjct: 126 KRQFYRDLMTYLREHRSNTERLVVMGDINISPIDLDIGIGEANRKRWLQTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ Q + GL+ F Q + R++ D + D + +
Sbjct: 186 EWLQTLLDWGLVDTFRQLHPNVNDQFSWFDYRSRGFEDNRGLRIDVILATPSLAETCQEA 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRGIDKPSDHAPIWATF 267
>gi|218259778|ref|ZP_03475367.1| hypothetical protein PRABACTJOHN_01026 [Parabacteroides johnsonii
DSM 18315]
gi|218224906|gb|EEC97556.1| hypothetical protein PRABACTJOHN_01026 [Parabacteroides johnsonii
DSM 18315]
Length = 253
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 34/139 (24%), Gaps = 28/139 (20%)
Query: 3 SQQG---EWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q EWL+ + + K+ ++ GD+N I D +
Sbjct: 117 ERQAFKMEWLEDFQNYVVELQKSRPKLILCGDYNICHEPIDIHDPVRNATNSGFLPEERE 176
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+K+ R + ++ +
Sbjct: 177 WMTRFLDAGYIDTFRLLNPDKQEYTWWSYRFSARAKNKGW--RIDYCMVSEPMKAQ--VE 232
Query: 99 SDLDTRRSKLSTHCPLTIE 117
+ S HCP IE
Sbjct: 233 KAYILNEAVHSDHCPAVIE 251
>gi|289424786|ref|ZP_06426568.1| exodeoxyribonuclease III [Propionibacterium acnes SK187]
gi|289427574|ref|ZP_06429286.1| exodeoxyribonuclease III [Propionibacterium acnes J165]
gi|295131421|ref|YP_003582084.1| exodeoxyribonuclease III [Propionibacterium acnes SK137]
gi|289154749|gb|EFD03432.1| exodeoxyribonuclease III [Propionibacterium acnes SK187]
gi|289159065|gb|EFD07257.1| exodeoxyribonuclease III [Propionibacterium acnes J165]
gi|291377273|gb|ADE01128.1| exodeoxyribonuclease III [Propionibacterium acnes SK137]
gi|313763084|gb|EFS34448.1| exodeoxyribonuclease III [Propionibacterium acnes HL013PA1]
gi|313773022|gb|EFS38988.1| exodeoxyribonuclease III [Propionibacterium acnes HL074PA1]
gi|313802417|gb|EFS43642.1| exodeoxyribonuclease III [Propionibacterium acnes HL110PA2]
gi|313807850|gb|EFS46334.1| exodeoxyribonuclease III [Propionibacterium acnes HL087PA2]
gi|313812037|gb|EFS49751.1| exodeoxyribonuclease III [Propionibacterium acnes HL083PA1]
gi|313812136|gb|EFS49850.1| exodeoxyribonuclease III [Propionibacterium acnes HL025PA1]
gi|313819198|gb|EFS56912.1| exodeoxyribonuclease III [Propionibacterium acnes HL046PA2]
gi|313819763|gb|EFS57477.1| exodeoxyribonuclease III [Propionibacterium acnes HL036PA1]
gi|313823880|gb|EFS61594.1| exodeoxyribonuclease III [Propionibacterium acnes HL036PA2]
gi|313827241|gb|EFS64955.1| exodeoxyribonuclease III [Propionibacterium acnes HL063PA1]
gi|313828429|gb|EFS66143.1| exodeoxyribonuclease III [Propionibacterium acnes HL063PA2]
gi|313831114|gb|EFS68828.1| exodeoxyribonuclease III [Propionibacterium acnes HL007PA1]
gi|313833483|gb|EFS71197.1| exodeoxyribonuclease III [Propionibacterium acnes HL056PA1]
gi|313838117|gb|EFS75831.1| exodeoxyribonuclease III [Propionibacterium acnes HL086PA1]
gi|314914557|gb|EFS78388.1| exodeoxyribonuclease III [Propionibacterium acnes HL005PA4]
gi|314919199|gb|EFS83030.1| exodeoxyribonuclease III [Propionibacterium acnes HL050PA1]
gi|314920633|gb|EFS84464.1| exodeoxyribonuclease III [Propionibacterium acnes HL050PA3]
gi|314925728|gb|EFS89559.1| exodeoxyribonuclease III [Propionibacterium acnes HL036PA3]
gi|314931457|gb|EFS95288.1| exodeoxyribonuclease III [Propionibacterium acnes HL067PA1]
gi|314957017|gb|EFT01123.1| exodeoxyribonuclease III [Propionibacterium acnes HL027PA1]
gi|314957831|gb|EFT01934.1| exodeoxyribonuclease III [Propionibacterium acnes HL002PA1]
gi|314960672|gb|EFT04773.1| exodeoxyribonuclease III [Propionibacterium acnes HL002PA2]
gi|314963372|gb|EFT07472.1| exodeoxyribonuclease III [Propionibacterium acnes HL082PA1]
gi|314969733|gb|EFT13831.1| exodeoxyribonuclease III [Propionibacterium acnes HL037PA1]
gi|314974296|gb|EFT18392.1| exodeoxyribonuclease III [Propionibacterium acnes HL053PA1]
gi|314976933|gb|EFT21028.1| exodeoxyribonuclease III [Propionibacterium acnes HL045PA1]
gi|314979892|gb|EFT23986.1| exodeoxyribonuclease III [Propionibacterium acnes HL072PA2]
gi|314985810|gb|EFT29902.1| exodeoxyribonuclease III [Propionibacterium acnes HL005PA1]
gi|314988407|gb|EFT32498.1| exodeoxyribonuclease III [Propionibacterium acnes HL005PA2]
gi|314988831|gb|EFT32922.1| exodeoxyribonuclease III [Propionibacterium acnes HL005PA3]
gi|315079798|gb|EFT51774.1| exodeoxyribonuclease III [Propionibacterium acnes HL078PA1]
gi|315084894|gb|EFT56870.1| exodeoxyribonuclease III [Propionibacterium acnes HL027PA2]
gi|315087238|gb|EFT59214.1| exodeoxyribonuclease III [Propionibacterium acnes HL002PA3]
gi|315088971|gb|EFT60947.1| exodeoxyribonuclease III [Propionibacterium acnes HL072PA1]
gi|315096818|gb|EFT68794.1| exodeoxyribonuclease III [Propionibacterium acnes HL038PA1]
gi|315100579|gb|EFT72555.1| exodeoxyribonuclease III [Propionibacterium acnes HL046PA1]
gi|315109351|gb|EFT81327.1| exodeoxyribonuclease III [Propionibacterium acnes HL030PA2]
gi|327325640|gb|EGE67438.1| exodeoxyribonuclease III [Propionibacterium acnes HL096PA2]
gi|327328234|gb|EGE70001.1| exodeoxyribonuclease III [Propionibacterium acnes HL096PA3]
gi|327445310|gb|EGE91964.1| exodeoxyribonuclease III [Propionibacterium acnes HL043PA1]
gi|327446951|gb|EGE93605.1| exodeoxyribonuclease III [Propionibacterium acnes HL043PA2]
gi|327449053|gb|EGE95707.1| exodeoxyribonuclease III [Propionibacterium acnes HL013PA2]
gi|327452601|gb|EGE99255.1| exodeoxyribonuclease III [Propionibacterium acnes HL087PA3]
gi|327457644|gb|EGF04299.1| exodeoxyribonuclease III [Propionibacterium acnes HL083PA2]
gi|328751915|gb|EGF65531.1| exodeoxyribonuclease III [Propionibacterium acnes HL087PA1]
gi|328756939|gb|EGF70555.1| exodeoxyribonuclease III [Propionibacterium acnes HL020PA1]
gi|328759048|gb|EGF72664.1| exodeoxyribonuclease III [Propionibacterium acnes HL025PA2]
gi|328762251|gb|EGF75743.1| exodeoxyribonuclease III [Propionibacterium acnes HL099PA1]
gi|332676289|gb|AEE73105.1| exodeoxyribonuclease III [Propionibacterium acnes 266]
Length = 297
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 38/132 (28%), Gaps = 20/132 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + + G F++ GDFN + + + +
Sbjct: 166 LVRRRQECTTQGRHFLVMGDFNIAHENADLKNWKANQRNEGFLPEERQWFDTILSPDTLI 225
Query: 50 GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + R K+ ++ D + + ++ + + +
Sbjct: 226 DVVRAQHPDTNGPYSWWSWRGKAFVNDAGWRIDYHLASPELASKAITAEIDRDPSYSERT 285
Query: 109 STHCPLTIEYDF 120
S H + ++YD
Sbjct: 286 SDHAAVVVDYDL 297
>gi|90578074|ref|ZP_01233885.1| hypothetical protein VAS14_13524 [Vibrio angustum S14]
gi|90441160|gb|EAS66340.1| hypothetical protein VAS14_13524 [Vibrio angustum S14]
Length = 287
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 44/124 (35%), Gaps = 5/124 (4%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--FWQKMDPDGLLIRFPQEK 59
L+ Q L++W Q+ PF++ GDFN I + F+ + G L
Sbjct: 158 LNFQRTLLQQWIKQQQINKQPFILVGDFNHHIAFKTTNNATNFFSSNNKQGPLKWLTNNV 217
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ---SDLDTRRSKLSTHCPLTI 116
+ C K + Y + F+I S Q S +LS HCP+
Sbjct: 218 KGNCLTKKIKNKKVYYRHYKELIDHGFSSEHFNITSVQQLPYSKEQVSTYQLSDHCPVIF 277
Query: 117 EYDF 120
F
Sbjct: 278 SLSF 281
>gi|15602556|ref|NP_245628.1| exonuclease III [Pasteurella multocida subsp. multocida str. Pm70]
gi|12720975|gb|AAK02775.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 267
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKES----- 61
L+++ +Q P +I GD N + D+ ++ G P+E+E
Sbjct: 132 LQQYLEQDHNANNPIIIMGDMNISPTDLDIGIGDENRKRWLRTGKCSFLPEEREWMNRLY 191
Query: 62 ------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ + V +
Sbjct: 192 GYGLVDTFRHLNPDVNDQFSWFDYRSKGFDDNRGLRIDHIIANHALAARCVETGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 252 AMEKPSDHAPVWAVF 266
>gi|330965345|gb|EGH65605.1| exonuclease III [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 270
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 29/144 (20%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ E L+ + P ++ GD N
Sbjct: 127 QRFYENLQALLEGHFSNDQPLIVMGDVNISPQDCDIGIGADNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVS 95
+ + E + R++ D + I +
Sbjct: 187 WMERLKNWGLVDSFRYLYPEVSDRFSWFDYRSRGFEDEPKRGLRIDLIMTSTGLQPRIKA 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 247 AGVDYDLRGMEKPSDHAPIWLELS 270
>gi|238922913|ref|YP_002936426.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
gi|238874585|gb|ACR74292.1| exodeoxyribonuclease [Eubacterium rectale ATCC 33656]
Length = 251
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+++ + P V+ GD N N I + + +
Sbjct: 127 REYLKT-LDAKKPVVLCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAKMTELLGSGFTDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + R K+ D + + S
Sbjct: 186 FRYFYPDAEGIYSWWSYRFKAREKNAGWRIDYFITSKRINDKLKKAAIHTDVLG----SD 241
Query: 111 HCPLTIEYDF 120
HCP+ ++ +F
Sbjct: 242 HCPVEVDIEF 251
>gi|330875089|gb|EGH09238.1| exonuclease III [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
Length = 270
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 29/144 (20%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ E L+ + P ++ GD N
Sbjct: 127 QRFYENLQALLEGHFSNDQPLIVMGDVNISPQDCDIGIGADNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVS 95
+ + E + R++ D + I +
Sbjct: 187 WMERLKNWGLVDSFRYLYPEVSDRFSWFDYRSRGFEDEPKRGLRIDLIMTSTGLQPRIKA 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 247 AGVDYDLRGMEKPSDHAPIWLELS 270
>gi|315606039|ref|ZP_07881070.1| exodeoxyribonuclease III [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312321|gb|EFU60407.1| exodeoxyribonuclease III [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 275
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 20/138 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------- 42
L + G + + ++ G+ ++ GDFN + +
Sbjct: 137 LPRIGNRMAELIAEEANGGVSSLVCGDFNVVRSRCDIKNWTPNHNKRAGVLDEEIAFLNR 196
Query: 43 -WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ D + + R ++ ++ D + S+D
Sbjct: 197 WVDEGWRDTVRDLAGDTQGPYSWWSWRGQAFVNNAGWRIDYQYATPRLGALARSFDIGRA 256
Query: 102 DTRRSKLSTHCPLTIEYD 119
++ S H P+++ YD
Sbjct: 257 PDYDARFSDHAPVSVTYD 274
>gi|332183996|gb|AEE26250.1| Exodeoxyribonuclease III [Francisella cf. novicida 3523]
Length = 262
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 25/139 (17%)
Query: 6 GEWLKKW---ADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------- 42
++LK++ +++++G F++ GDFN I +
Sbjct: 125 MQFLKRYKEILKEQVESGRDFIVCGDFNIVHKEIDIKNWKSNYGKTSGVLPEEQAWLDHI 184
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ + E R ++ + + + +SD
Sbjct: 185 FDDLGWVDTFRVINNEPLQYTWWSNRGQARANNVGW--RIDYHISTPALKDKVVPKSDYI 242
Query: 103 TRRSKLSTHCPLTIEYDFE 121
+ + S H PLTI YDFE
Sbjct: 243 YKENWFSDHAPLTISYDFE 261
>gi|160945969|ref|ZP_02093195.1| hypothetical protein FAEPRAM212_03502 [Faecalibacterium prausnitzii
M21/2]
gi|158443700|gb|EDP20705.1| hypothetical protein FAEPRAM212_03502 [Faecalibacterium prausnitzii
M21/2]
gi|295103228|emb|CBL00772.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii SL3/3]
Length = 250
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 32/132 (24%), Gaps = 23/132 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + P ++ GD N + + +M
Sbjct: 124 DAFRAYLLA-LDAKKPVILCGDLNVAHTEMDIKNAKTNRMSAGFTDQERAKMTELLAAGF 182
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + D + I + + +
Sbjct: 183 ADSFRVVHPDEVKYSWWSYRFHAREKNAGWRIDYFIVSRRIADRIRAAEIHNEIFG---- 238
Query: 109 STHCPLTIEYDF 120
S HCP+ ++ D
Sbjct: 239 SDHCPVELQIDL 250
>gi|126698940|ref|YP_001087837.1| putative exodeoxyribonuclease [Clostridium difficile 630]
gi|254974886|ref|ZP_05271358.1| putative exodeoxyribonuclease [Clostridium difficile QCD-66c26]
gi|255092273|ref|ZP_05321751.1| putative exodeoxyribonuclease [Clostridium difficile CIP 107932]
gi|255100359|ref|ZP_05329336.1| putative exodeoxyribonuclease [Clostridium difficile QCD-63q42]
gi|255306301|ref|ZP_05350472.1| putative exodeoxyribonuclease [Clostridium difficile ATCC 43255]
gi|255314013|ref|ZP_05355596.1| putative exodeoxyribonuclease [Clostridium difficile QCD-76w55]
gi|255516693|ref|ZP_05384369.1| putative exodeoxyribonuclease [Clostridium difficile QCD-97b34]
gi|255649791|ref|ZP_05396693.1| putative exodeoxyribonuclease [Clostridium difficile QCD-37x79]
gi|306519893|ref|ZP_07406240.1| putative exodeoxyribonuclease [Clostridium difficile QCD-32g58]
gi|115250377|emb|CAJ68199.1| Exodeoxyribonuclease [Clostridium difficile]
Length = 250
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 33/133 (24%), Gaps = 25/133 (18%)
Query: 7 EWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------------- 49
W + D K+ P ++ GD N I + +
Sbjct: 121 RWEDDFIDYLTKLDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKFSKLLDS 180
Query: 50 ---GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
F +KE R + + D +VS D
Sbjct: 181 GFIDTYRYFNPDKEGVYSWWSYRFNARKNNAGWRIDYFCASKKLEDRLVSADIHTEILG- 239
Query: 106 SKLSTHCPLTIEY 118
S HCP+ +E
Sbjct: 240 ---SDHCPVELEI 249
>gi|283769444|ref|ZP_06342342.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
gi|283103969|gb|EFC05354.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
Length = 251
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 23/132 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ L+ + ++K P + GD N I + +P
Sbjct: 125 DRLRDHLN-RLKEVKPVIYTGDLNVAHEEIDLKNPQSNHKNPGFSDEERQKMTELLADGY 183
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + D + + + D K
Sbjct: 184 IDSFRYLYPKEVKYSWWSYRAAARERNVGWRIDYFIVSENLKEKVKNALIDDE----VKG 239
Query: 109 STHCPLTIEYDF 120
S HCP+ +E DF
Sbjct: 240 SDHCPIELEMDF 251
>gi|227536399|ref|ZP_03966448.1| endonuclease/exonuclease/phosphatase family protein
[Sphingobacterium spiritivorum ATCC 33300]
gi|227243775|gb|EEI93790.1| endonuclease/exonuclease/phosphatase family protein
[Sphingobacterium spiritivorum ATCC 33300]
Length = 279
Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 30/116 (25%), Gaps = 6/116 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + A + +P +I GDFN + D + ++
Sbjct: 167 KESAKLMMAKAKE-FAGNLPLIITGDFNVSETDEAYFTLANSGIVADSYSKIDSRYAPNS 225
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ I FS+ Y S H P+ ++
Sbjct: 226 T-----FNGFGKSIKPTERIDHIFITPQFSVKKYGILTDTYVGKYPSDHFPVMVDL 276
>gi|302382037|ref|YP_003817860.1| exodeoxyribonuclease III Xth [Brevundimonas subvibrioides ATCC
15264]
gi|302192665|gb|ADL00237.1| exodeoxyribonuclease III Xth [Brevundimonas subvibrioides ATCC
15264]
Length = 257
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDG 50
E L A T P V+AGD+N D F + +D
Sbjct: 126 ERLIAHAGTLFDTEAPVVLAGDYNVVPTEADIYDSRSWKKNALLQPESRAAFARMLDDGW 185
Query: 51 LLIRF--PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + D+ + +V R K
Sbjct: 186 TDALRERFPHEAVYTFWDYLRDGWSRNAGLRIDHLLLNPQAAGRLVDAGVDAGVRGREKA 245
Query: 109 STHCPLTIEYD 119
S H P IE
Sbjct: 246 SDHAPAWIELR 256
>gi|297569473|ref|YP_003690817.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
gi|296925388|gb|ADH86198.1| exodeoxyribonuclease III Xth [Desulfurivibrio alkaliphilus AHT2]
Length = 490
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 25/122 (20%), Gaps = 22/122 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGD-----------TDDFWQKMDPD-------GLLIRFP 56
+ + T V+ GD N I + F
Sbjct: 372 ENLATQKNVVVCGDLNVAHREIDLARPQENQQSPGFSPAERAWLDGFLANGFTDTFRLFN 431
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
QE + R + D + S HCP+T+
Sbjct: 432 QEGGNYTWWSYRGGARQRNVGWRIDYFCIDSAGRRRVREAGI----RPEIMGSDHCPVTL 487
Query: 117 EY 118
Sbjct: 488 TL 489
>gi|89055306|ref|YP_510757.1| exodeoxyribonuclease III [Jannaschia sp. CCS1]
gi|88864855|gb|ABD55732.1| Exodeoxyribonuclease III [Jannaschia sp. CCS1]
Length = 261
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E + + A + + +P V+AGD+N F + +
Sbjct: 129 MERMHRHAQGLLASEMPVVMAGDYNIIPQDADAARPEVWQDDALARSESRAAFRRLLALG 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + ++ + L+ + + R K
Sbjct: 189 FTEAFRARNQAPGMYSFWDYQAGAWNKNDGIRIDHHLLSPEAADLLQECWIEKDVRGRDK 248
Query: 108 LSTHCPLTIEY 118
S H P+ I+
Sbjct: 249 PSDHVPVWIDL 259
>gi|332654136|ref|ZP_08419880.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
gi|332517222|gb|EGJ46827.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
Length = 252
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 33/132 (25%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ L+ + + + P + GD N I + +M+
Sbjct: 125 DDLRAYLME-LDKVKPVIYCGDLNVAHREIDLKNPKTNRMNAGFTDQEREKMTTLLSSGF 183
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + R ++ D +I +
Sbjct: 184 TDTFRFLYPDLEGVYSWWSYRFQARKKNAGWRIDYFIVSDRLQNAIKRAEILTQVEG--- 240
Query: 108 LSTHCPLTIEYD 119
S HCP+ +E D
Sbjct: 241 -SDHCPVLLELD 251
>gi|291333503|gb|ADD93201.1| exodeoxyribonuclease III [uncultured archaeon MedDCM-OCT-S08-C282]
Length = 259
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 17/127 (13%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
+++ + P V+ GD N + + + DG L
Sbjct: 132 RQFIRPYLDDTRPVVVCGDLNIAHTEDDIWNPKGNARNSGFLPHERAWFSDLLADGWLDA 191
Query: 55 FPQEKESTC--NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
F + N+ FL++ + + D + + +S H
Sbjct: 192 FRHKVGDGAKVYSWWSNRGQARAKDRGWRIDYFLLNPAAAEAMVDCTIVRQGGIDVSDHA 251
Query: 113 PLTIEYD 119
P+ ++ D
Sbjct: 252 PVVLDLD 258
>gi|300022777|ref|YP_003755388.1| exodeoxyribonuclease III [Hyphomicrobium denitrificans ATCC 51888]
gi|299524598|gb|ADJ23067.1| exodeoxyribonuclease III [Hyphomicrobium denitrificans ATCC 51888]
Length = 260
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIG-------DTDDFWQKMDPDGLLIRF--- 55
++ A Q + +P V+AGDFN S+ D +Q
Sbjct: 128 MARMRLRAKQLQQDEMPLVLAGDFNVIPESVDAKRPAAWVNDALFQPESRAAWRTLVNEG 187
Query: 56 --------PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + I D+ + +V+ + K
Sbjct: 188 FTDATRACHPGPGVYTFWDYQAGAFQKDDGIRIDHILLSSQAADLLVASGIDRATRAQEK 247
Query: 108 LSTHCPLTIEY 118
S H P+ ++
Sbjct: 248 PSDHVPVWVKL 258
>gi|188588970|ref|YP_001920998.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum E3 str. Alaska E43]
gi|188499251|gb|ACD52387.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum E3 str. Alaska E43]
Length = 258
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 9/123 (7%)
Query: 5 QGEW-----LKKWAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
Q L ++ ++ K +P +I GDFN NS D + L+ Q+
Sbjct: 139 QARAYELKKLSEFIKKEQEKEDLPLIIMGDFNSNPNSKLIKDFINGDVLNKRLVAV--QD 196
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K+ + + F I+ + + S H PL E
Sbjct: 197 KKKDLYNNATMGNF-KNKEKGSHIDYIFVSEEFEIIDVEIVKYNVNGKYPSDHYPLMAEI 255
Query: 119 DFE 121
+ +
Sbjct: 256 NIK 258
>gi|169347307|ref|ZP_02866245.1| hypothetical protein CLOSPI_00022 [Clostridium spiroforme DSM 1552]
gi|169293924|gb|EDS76057.1| hypothetical protein CLOSPI_00022 [Clostridium spiroforme DSM 1552]
Length = 252
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 11/124 (8%), Positives = 33/124 (26%), Gaps = 23/124 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
++ P ++ GD N I + + + +
Sbjct: 133 LEEKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTQLLNHGFIDTFRYLYPD 192
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + R + + F++ + + + S HCP+ ++
Sbjct: 193 LQGAYSWWSYRFNARKNNAGW--RIDYFIVSDCLKEKI--KDAYIFKDIMGSDHCPVGLD 248
Query: 118 YDFE 121
+ +
Sbjct: 249 IELD 252
>gi|149909989|ref|ZP_01898638.1| exodeoxyribonuclease III [Moritella sp. PE36]
gi|149807003|gb|EDM66962.1| exodeoxyribonuclease III [Moritella sp. PE36]
Length = 274
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 28/137 (20%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L + + ++ GD N
Sbjct: 137 QDLNIYLNDNHTAEDDLIVMGDINISPADKDIGIGEPNAKRWLKTGKCSFQPEEREWLAK 196
Query: 43 WQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q E + R+K D + D + +V D
Sbjct: 197 LQGFGLHDTFRTIKPEVSDRYSWFDYRSKGFPDNRGLRIDVILATATLNAKVVESDVDYE 256
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 257 LRAIEKPSDHAPIWTTF 273
>gi|307266821|ref|ZP_07548344.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
gi|306918162|gb|EFN48413.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
Length = 257
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 31/123 (25%), Gaps = 23/123 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ + P ++ GD N I + + + F
Sbjct: 135 KLDSVKPIILCGDLNVAHKEIDIKNPSANRRNAGFTDEEREKMTMLLNSGFIDTFRYFYP 194
Query: 58 EKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
K+ + + F++ + Y S HCP+ +
Sbjct: 195 HKKDAYTWWSYMRNAREKNIGW--RIDYFIVSQ--RLKDYLIDAEIHSDVMGSDHCPVVL 250
Query: 117 EYD 119
E D
Sbjct: 251 EID 253
>gi|291300710|ref|YP_003511988.1| exodeoxyribonuclease III Xth [Stackebrandtia nassauensis DSM 44728]
gi|290569930|gb|ADD42895.1| exodeoxyribonuclease III Xth [Stackebrandtia nassauensis DSM 44728]
Length = 265
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 37/137 (27%), Gaps = 20/137 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL---------- 51
+++ E+L + VI GD+N I + K L
Sbjct: 127 MAEFAEYLVALRKRAEADNRHVVICGDWNIAHQEIDLKNWKANKKTAGFLPEEREWMTRV 186
Query: 52 ----------LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
P+ R ++ + D + + +
Sbjct: 187 FDDIGYVDVARRLHPEGPGPYSWWSYRGRAFDNDAGWRIDYHIATPGLAEAAKTAVVERA 246
Query: 102 DTRRSKLSTHCPLTIEY 118
T ++ S H P+T+ Y
Sbjct: 247 ATHDARWSDHAPVTVTY 263
>gi|160933576|ref|ZP_02080964.1| hypothetical protein CLOLEP_02430 [Clostridium leptum DSM 753]
gi|156867453|gb|EDO60825.1| hypothetical protein CLOLEP_02430 [Clostridium leptum DSM 753]
Length = 261
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 34/131 (25%), Gaps = 23/131 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P V+ GD N I + + +
Sbjct: 135 DAFRDYLKG-LDSKKPVVVCGDMNVAHQEIDLKNPKTNRKNAGFTDEERERFSQLLAAGF 193
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
EK R + + FL+ + Q +
Sbjct: 194 IDSYRSLYPEKIEYSWWSYRFNARKNNAGW--RIDYFLVSDRIGGRI--QDAKIHTQVMG 249
Query: 109 STHCPLTIEYD 119
S HCP+ ++ D
Sbjct: 250 SDHCPVELDLD 260
>gi|70731287|ref|YP_261028.1| exonuclease III [Pseudomonas fluorescens Pf-5]
gi|68345586|gb|AAY93192.1| exodeoxyribonuclease III [Pseudomonas fluorescens Pf-5]
Length = 270
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 14/139 (10%), Positives = 27/139 (19%), Gaps = 27/139 (19%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + + P V+ GD N
Sbjct: 131 QDLQHLLESRFSNDQPLVVMGDVNISPEDCDIGIGAENAKRWLKTGKCSFLPEEREWMAR 190
Query: 43 WQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQS 99
+ E + R++ D + +
Sbjct: 191 LKNWGLVDSFRHLNPEVNDRFSWFDYRSRGFEDEPKRGLRIDLIMASQGLLPRVKDAGVD 250
Query: 100 DLDTRRSKLSTHCPLTIEY 118
K S H P+ +E
Sbjct: 251 YELRGMEKPSDHAPIWLEL 269
>gi|282878661|ref|ZP_06287430.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
buccalis ATCC 35310]
gi|281299206|gb|EFA91606.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
buccalis ATCC 35310]
Length = 248
Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 3/115 (2%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L + T + GDFN S + D I +
Sbjct: 134 RESARLLLQKIKSIAGTNATVISTGDFNATPESEPIRILLNDGLLLDSYKISIQPPYGTY 193
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
N + D+ + + SI Y + S H P+ ++
Sbjct: 194 GTS---NGWKIREKGKDQRIDHIFVTKDVSIQKYGVINDIPYGQFPSDHYPVMVK 245
>gi|163841804|ref|YP_001626209.1| exodeoxyribonuclease III [Renibacterium salmoninarum ATCC 33209]
gi|162955280|gb|ABY24795.1| exodeoxyribonuclease III [Renibacterium salmoninarum ATCC 33209]
Length = 267
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/139 (9%), Positives = 32/139 (23%), Gaps = 25/139 (17%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------- 41
+L+++ K W + + GD+N D
Sbjct: 134 VLNEEA---KGWLAK--DPNAQIALVGDWNIAPQDDDVWDVKYFIDEGLTHFSAPERAAF 188
Query: 42 -FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
++ ++ + + D + +V +
Sbjct: 189 QAFEAAGFTDVVRPSHPGPGVYTYWDYKQLRFPKKEGMRIDFIMASPALAARVVHTEIDR 248
Query: 101 LDTRRSKLSTHCPLTIEYD 119
+ + S H P+ E
Sbjct: 249 EERKGKGASDHAPVIAELS 267
>gi|297618884|ref|YP_003706989.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
gi|297377861|gb|ADI36016.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
Length = 249
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 22/121 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
+ P + GD N I + K F +E
Sbjct: 132 LNESKPLIFCGDLNVAHKEIDLKNPKTNKKHAGFTEEERMGFDKYVENNFVDTFRLFNKE 191
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ + + F NS V+Y + + + S HCP+ +E
Sbjct: 192 SDNYTWWSYMHNARAKNIGW--RIDYFCTSNSI--VNYVKKSVILDKIYGSDHCPIKLEL 247
Query: 119 D 119
D
Sbjct: 248 D 248
>gi|319935137|ref|ZP_08009577.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
gi|319809962|gb|EFW06345.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
Length = 252
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 36/136 (26%), Gaps = 25/136 (18%)
Query: 4 QQG--EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------ 49
+Q + ++ QK+K P V+ GD N N I +D +
Sbjct: 119 RQVWEDAFRQHV-QKLKESKPVVLCGDLNVAHNEIDLKNDKTNHKNAGFTDQERAKFSEL 177
Query: 50 ------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
E E K+ F++ +
Sbjct: 178 LNSGFIDTFRYKYPETEMYSWWSYMFKAREKNAGW--RIDYFVVSEDLKENI--KDAYIY 233
Query: 104 RRSKLSTHCPLTIEYD 119
S HCP+ +E +
Sbjct: 234 TEIMGSDHCPVGVELE 249
>gi|319952714|ref|YP_004163981.1| exodeoxyribonuclease iii xth [Cellulophaga algicola DSM 14237]
gi|319421374|gb|ADV48483.1| exodeoxyribonuclease III Xth [Cellulophaga algicola DSM 14237]
Length = 253
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 31/128 (24%), Gaps = 22/128 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDGL 51
+++ +I GD+N +I + +
Sbjct: 130 QEYVTDLKVEHPNLIILGDYNICHKAIDIHNPVGLKNTSGFLPVEREWIGAFMDNGFIDS 189
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F +E + R + + D + +K S H
Sbjct: 190 FRYFNEEPDKYTWWSYRANARNNNKGWRLDYALVSTPLKDRLKRAVI----LAEAKHSDH 245
Query: 112 CPLTIEYD 119
CP+ +E
Sbjct: 246 CPILVELS 253
>gi|257789897|ref|YP_003180503.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|317489355|ref|ZP_07947868.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325832619|ref|ZP_08165417.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
gi|257473794|gb|ACV54114.1| exodeoxyribonuclease III Xth [Eggerthella lenta DSM 2243]
gi|316911526|gb|EFV33122.1| exodeoxyribonuclease III [Eggerthella sp. 1_3_56FAA]
gi|325485940|gb|EGC88400.1| exodeoxyribonuclease III [Eggerthella sp. HGA1]
Length = 285
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 32/124 (25%), Gaps = 23/124 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPD---GLLIRFPQ 57
+ P V+ GDFN I + + +
Sbjct: 166 ETADPKPVVMCGDFNVAHQEIDLKNPGPNRGKAGFSDEERGKFTDLLEVGFVDSFRHLHP 225
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + R K+ FL+ + + QS S HCP+ I
Sbjct: 226 DVTGAYSWWSYRFKARQTNAGW--RIDYFLVSDELAPKI--QSACIYDEVYGSDHCPVGI 281
Query: 117 EYDF 120
E +
Sbjct: 282 ELEL 285
>gi|330808554|ref|YP_004353016.1| exodeoxyribonuclease III [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376662|gb|AEA68012.1| Putative exodeoxyribonuclease III [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 264
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 32/130 (24%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDG 50
E L +A + P V+AGD+N + + + + +D
Sbjct: 129 ERLIDYAQGLQASDHPVVLAGDYNVVPTDMDIYNPRSWLKDALLQPESRACYLRLLDQGW 188
Query: 51 LL--IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + + D+ S + +
Sbjct: 189 TDSLRHLYPDERIYTFWDYFRQHWQKNSGLRIDHLLLNPAASAYLSEAGVDAWVRNQPHP 248
Query: 109 STHCPLTIEY 118
S H P I
Sbjct: 249 SDHAPTWIRL 258
>gi|307212268|gb|EFN88076.1| Recombination repair protein 1 [Harpegnathos saltator]
Length = 327
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 32/125 (25%), Gaps = 22/125 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ ++ + P +I GD N I + +
Sbjct: 203 KKYIEE-LDQKKPVIICGDMNVAHQEIDLKNPKTNTKNAGFTKEERDGMTDFLAAGFIDT 261
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ + ++ I FL ++ ++ S H
Sbjct: 262 FRLLYPD-KEGAYTFWSYFANARNKDIGWRLDYFLASERIKNKIC--DNIIRKQVYGSDH 318
Query: 112 CPLTI 116
CP+ +
Sbjct: 319 CPVIL 323
>gi|292899632|ref|YP_003539001.1| exodeoxyribonuclease III [Erwinia amylovora ATCC 49946]
gi|291199480|emb|CBJ46597.1| exodeoxyribonuclease III [Erwinia amylovora ATCC 49946]
Length = 268
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 35/138 (25%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
L + +Q+ K +I GD N + + +
Sbjct: 130 RDLHSYLEQQQKPDNQLLIMGDMNISSGDLDIGIGEENRKRWLRTGKCSFLPEEREWMDK 189
Query: 45 KMDPDGLLIRFPQE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
M+ + Q + R+K D + D + V+
Sbjct: 190 LMNWGLVDTWRAQHATINDRFSWFDYRSKGFDDNRGLRIDLVLASRPLADRCVATGIDYD 249
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ E+
Sbjct: 250 IRAMEKPSDHAPIWAEFS 267
>gi|300771475|ref|ZP_07081350.1| endonuclease/exonuclease/phosphatase [Sphingobacterium spiritivorum
ATCC 33861]
gi|300761464|gb|EFK58285.1| endonuclease/exonuclease/phosphatase [Sphingobacterium spiritivorum
ATCC 33861]
Length = 279
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 30/116 (25%), Gaps = 6/116 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + A + +P +I GDFN + D + ++
Sbjct: 167 KESAKLMMAKAKE-FAGNLPLIITGDFNVSETDEAYFTLANSGIVADSYSKIDSRYAPNS 225
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ I FS+ Y S H P+ ++
Sbjct: 226 T-----FNGFGKSIKPAERIDHIFITPQFSVKKYGILTDTYVGKYPSDHFPVMVDL 276
>gi|256419936|ref|YP_003120589.1| exodeoxyribonuclease III Xth [Chitinophaga pinensis DSM 2588]
gi|256034844|gb|ACU58388.1| exodeoxyribonuclease III Xth [Chitinophaga pinensis DSM 2588]
Length = 254
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 35/134 (26%), Gaps = 25/134 (18%)
Query: 7 EWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+WL++ + DQ T +I GD+N I D K
Sbjct: 124 QWLEEFYGYVDQLKATRPNLIICGDYNICHKPIDIHDPVGNKKSSGFLPEERAWLDKLFS 183
Query: 50 ----GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ E R + + D + +
Sbjct: 184 NGFVDTFRHYHPEPHQYSWWSVRTNARANNKGWRIDYISVTAPLQPKLKDALI----WPD 239
Query: 106 SKLSTHCPLTIEYD 119
K S HCP+ ++ +
Sbjct: 240 VKHSDHCPIYLQLE 253
>gi|39996639|ref|NP_952590.1| exonuclease III [Geobacter sulfurreducens PCA]
gi|39983520|gb|AAR34913.1| exodeoxyribonuclease III [Geobacter sulfurreducens PCA]
gi|298505653|gb|ADI84376.1| exodeoxyribonuclease III [Geobacter sulfurreducens KN400]
Length = 271
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 25/136 (18%), Gaps = 27/136 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQKM 46
+ P + GDFN +
Sbjct: 135 AYLKSSCDPDAPLAVMGDFNIAPVDPDIGIGADNAKRWLRTGKTSFLPEERAWFAALRDW 194
Query: 47 DPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNF--LIDNSFSIVSYDQSDLDT 103
+ + R++ + + +
Sbjct: 195 GLHDSYRELYPDIDDRFSWFDYRSRGFESEPKRGLRIDHILLTRPLQQACRAAGIDYDIR 254
Query: 104 RRSKLSTHCPLTIEYD 119
K S HCP+ +E D
Sbjct: 255 AMEKPSDHCPVWVEVD 270
>gi|254302413|ref|ZP_04969771.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322605|gb|EDK87855.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 253
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 36/135 (26%), Gaps = 24/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ +K+ ++ P V+ GD N I + + +
Sbjct: 124 DEFRKYLK-NLEKKKPVVVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLDSGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ R ++ + D ++V +
Sbjct: 183 IDTFRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHSQIEG--- 239
Query: 108 LSTHCPLTIEYDFEK 122
S HCP+ + D K
Sbjct: 240 -SDHCPVVLFLDLNK 253
>gi|89889637|ref|ZP_01201148.1| exodeoxyribonuclease III [Flavobacteria bacterium BBFL7]
gi|89517910|gb|EAS20566.1| exodeoxyribonuclease III [Flavobacteria bacterium BBFL7]
Length = 253
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 22/132 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
E +++ + K ++ GD+N +I + +
Sbjct: 126 MEEFLEYSKELRKERPNLIVCGDYNICHKAIDIHNPKGLKSTSGFLPEEREWMDRFVASG 185
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + R S D + I
Sbjct: 186 FIDTFRMFNDQPDQYSWWSYRGGSRARNKGWRLDYHMATEQMTDRIKRAVILQSAV---- 241
Query: 108 LSTHCPLTIEYD 119
S HCP+ +E D
Sbjct: 242 HSDHCPVVVEID 253
>gi|139439406|ref|ZP_01772847.1| Hypothetical protein COLAER_01867 [Collinsella aerofaciens ATCC
25986]
gi|133775185|gb|EBA39005.1| Hypothetical protein COLAER_01867 [Collinsella aerofaciens ATCC
25986]
Length = 272
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 24/134 (17%)
Query: 7 EWLKKWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+ + + + + +TG P V GDFN I + + +
Sbjct: 143 DAYRGFLNALERETGKPVVTCGDFNVAHEEIDLKNPKSNRGNAGFSDEERGKFTELLNAG 202
Query: 50 --GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ + R + + FL+ +S +
Sbjct: 203 FTDTWRAANPDVEGVYSWWSYRFNARKNNAGW--RIDYFLVSDSIAANVR--DTGIRGDI 258
Query: 107 KLSTHCPLTIEYDF 120
S HCP+T+ +
Sbjct: 259 FGSDHCPVTLTLEL 272
>gi|317051838|ref|YP_004112954.1| exodeoxyribonuclease III [Desulfurispirillum indicum S5]
gi|316946922|gb|ADU66398.1| exodeoxyribonuclease III [Desulfurispirillum indicum S5]
Length = 272
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 12/139 (8%), Positives = 27/139 (19%), Gaps = 26/139 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L + Q + ++ GD N
Sbjct: 134 LTAYLQQCHQPAQQLLLMGDMNIAPTDSDVGIGEDNARRWLRSGKCCFLPEERLWYQSLT 193
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLI--DNSFSIVSYDQSDLD 102
+ + R++ + L+ ++
Sbjct: 194 DWGLRDAHRLLFPDMQELSWFDYRSRGFEREPKRGLRIDHMLVTTPLEEKLLDGGIDYEI 253
Query: 103 TRRSKLSTHCPLTIEYDFE 121
K S HCP+ ++
Sbjct: 254 RALEKPSDHCPIWVKIRLS 272
>gi|182416804|ref|ZP_02948195.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237669009|ref|ZP_04528993.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379266|gb|EDT76765.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237657357|gb|EEP54913.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 254
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 32/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + ++ P ++ GD N I + + +
Sbjct: 127 DVFRNYLKD-LEKNKPVILCGDLNVAHKEIDLKNPSSNRKNAGFSDEERSKMSELLNSGF 185
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + R + + D + +
Sbjct: 186 TDTFRYFYPDIEGVYSWWSYRFNARANNAGWRIDYFIVSQSLNDKLEDAKIHTSIEG--- 242
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E +
Sbjct: 243 -SDHCPVELEINL 254
>gi|229061336|ref|ZP_04198683.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|228717951|gb|EEL69596.1| Exodeoxyribonuclease [Bacillus cereus AH603]
Length = 252
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 31/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ P + GD N + + + +P
Sbjct: 128 RAYIK-RLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEEREKFTCVLEAGFIDT 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + R + D I+ + S
Sbjct: 187 YRYLYPDQEGAYSWWSYRMGARAKNIGWRLDYFVISERLEHKIIDAKINSEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + DF
Sbjct: 243 HCPVELHIDF 252
>gi|332288253|ref|YP_004419105.1| exonuclease III [Gallibacterium anatis UMN179]
gi|330431149|gb|AEC16208.1| exonuclease III [Gallibacterium anatis UMN179]
Length = 267
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 39/137 (28%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKES--- 61
L+ + ++ P ++ GD N + ++ ++ G P+E+E
Sbjct: 130 RDLQHYLVKEHNAANPVLVMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWLQN 189
Query: 62 --------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
R+K D + D + +S +
Sbjct: 190 LYQYGLVDTFRALHPQVNDQFSWFDYRSKGFDDNRGLRIDLILANQALAQRCISAGIAKD 249
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 250 IRAMEKPSDHAPIWAEF 266
>gi|46143793|ref|ZP_00134262.2| COG0708: Exonuclease III [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|165976406|ref|YP_001651999.1| exonuclease III [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|307245885|ref|ZP_07527970.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|307247975|ref|ZP_07530006.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar 2
str. S1536]
gi|307250227|ref|ZP_07532183.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar 4
str. M62]
gi|307252613|ref|ZP_07534507.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|307254858|ref|ZP_07536684.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar 9
str. CVJ13261]
gi|307257023|ref|ZP_07538799.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|307259300|ref|ZP_07541029.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|307261462|ref|ZP_07543133.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|307263645|ref|ZP_07545256.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar
13 str. N273]
gi|165876507|gb|ABY69555.1| exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar 3
str. JL03]
gi|306853245|gb|EFM85465.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|306855529|gb|EFM87701.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar 2
str. S1536]
gi|306857756|gb|EFM89856.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar 4
str. M62]
gi|306859935|gb|EFM91954.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|306862229|gb|EFM94197.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar 9
str. CVJ13261]
gi|306864507|gb|EFM96414.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|306866667|gb|EFM98526.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|306868857|gb|EFN00663.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|306871022|gb|EFN02755.1| Exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar
13 str. N273]
Length = 280
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 37/135 (27%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKES----- 61
L+ + + ++ P VI GD N + + ++ DG P+E+E
Sbjct: 145 LQHYLESELSPENPIVIMGDMNISPTDLDIGIGEPNRKRWLRDGKCSFLPEEREWLDRLY 204
Query: 62 ------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D + V
Sbjct: 205 SYGLIDTFRAMNPQANDKFSWFDYRSKGFDDNRGLRIDLVLASKGLAERCVETGIDLEIR 264
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 265 AMEKPSDHSPVWAVF 279
>gi|312961228|ref|ZP_07775733.1| exodeoxyribonuclease III [Pseudomonas fluorescens WH6]
gi|311284886|gb|EFQ63462.1| exodeoxyribonuclease III [Pseudomonas fluorescens WH6]
Length = 264
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E L +A + P ++AGDFN + + +Q++ G
Sbjct: 129 ERLIDYAGALQASEHPVLLAGDFNVVPTDLDIYNPRSWLKDALLQPESRACYQRLLAQGW 188
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + + D+ + +
Sbjct: 189 TDALRHLYPDERVYTFWDYFRQHWQKNSGLRIDHLLLNPALTPYLKDAGVDAWVRNEPHA 248
Query: 109 STHCPLTIEY 118
S H P I+
Sbjct: 249 SDHAPTWIQL 258
>gi|262274141|ref|ZP_06051953.1| hypothetical protein VHA_001117 [Grimontia hollisae CIP 101886]
gi|262221951|gb|EEY73264.1| hypothetical protein VHA_001117 [Grimontia hollisae CIP 101886]
Length = 252
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 12/128 (9%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L Q E L W + ++K G F+IAGDFN +N + Q + G K +
Sbjct: 126 LDHQIEALSVWINARLKLGQDFIIAGDFNHYLNDKNEWVWK-QLLLDVGEDNLVKLTKGT 184
Query: 62 TCNV----IKRNKSSLDYFVIDRDNKNFLIDNS-------FSIVSYDQSDLDTRRSKLST 110
++ V + + + Y S +LS
Sbjct: 185 PAKCKARKYNYRTKRWEHVVYQKLIDHIIASKGAVSALNPPQARQYQYSYHAVATYRLSD 244
Query: 111 HCPLTIEY 118
HCP+ ++
Sbjct: 245 HCPIVVDL 252
>gi|126208451|ref|YP_001053676.1| exonuclease III [Actinobacillus pleuropneumoniae L20]
gi|303251086|ref|ZP_07337272.1| exonuclease III [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|303253573|ref|ZP_07339711.1| exonuclease III [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|126097243|gb|ABN74071.1| exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|302647493|gb|EFL77711.1| exonuclease III [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|302650096|gb|EFL80266.1| exonuclease III [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
Length = 267
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 37/135 (27%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKES----- 61
L+ + + ++ P VI GD N + + ++ DG P+E+E
Sbjct: 132 LQHYLESELSPENPIVIMGDMNISPTDLDIGIGEPNRKRWLRDGKCSFLPEEREWLDRLY 191
Query: 62 ------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D + V
Sbjct: 192 SYGLIDTFRAMNPQANDKFSWFDYRSKGFDDNRGLRIDLVLASKGLAERCVETGIDLEIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 252 AMEKPSDHSPVWAVF 266
>gi|330993334|ref|ZP_08317269.1| endonuclease/exonuclease/phosphatase [Gluconacetobacter sp. SXCC-1]
gi|329759364|gb|EGG75873.1| endonuclease/exonuclease/phosphatase [Gluconacetobacter sp. SXCC-1]
Length = 283
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 7/120 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L +Q + W ++ G F + GDFNR + D + + G L + S
Sbjct: 171 LLRQIAIVADWILERQDEGEAFAVLGDFNRLLAPD---DPAFHTLAASGPLALVTAGRAS 227
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
C +D+ ++ + +S ++ Y + T S+LS HCP+++
Sbjct: 228 PCAQGSY---FIDHILVGGPAYARVRPDSLRVMLYHEDSG-TEASRLSDHCPVSVNLSLP 283
>gi|283457216|ref|YP_003361786.1| exonuclease III [Rothia mucilaginosa DY-18]
gi|283133201|dbj|BAI63966.1| exonuclease III [Rothia mucilaginosa DY-18]
Length = 309
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 33/133 (24%), Gaps = 20/133 (15%)
Query: 6 GEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDD------------------FWQK 45
E L++ ++ + GD+N D F
Sbjct: 175 MEALRQNVHNELAANPQSQLALVGDWNVAPEDADVWDIDYFLRNEMTHVSEPERCAFAAL 234
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
++ + + P + + D + F + + ++
Sbjct: 235 LEEGMVDVVRPHTPGEYTYWDYQAGRFTKDEGMRIDFQLFSPALAARVERAWIDKVERAG 294
Query: 106 SKLSTHCPLTIEY 118
S H P+ +E
Sbjct: 295 EGASDHTPVVVEI 307
>gi|262341194|ref|YP_003284049.1| exodeoxyribonuclease [Blattabacterium sp. (Blattella germanica)
str. Bge]
gi|262272531|gb|ACY40439.1| exodeoxyribonuclease [Blattabacterium sp. (Blattella germanica)
str. Bge]
Length = 253
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 32/125 (25%), Gaps = 22/125 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGLLI 53
+ +I GD+N + I D + +
Sbjct: 132 HVKKIRNQFNHLIICGDYNICHHEIDIYDPMKHQEISGFLPEEREWMTHFLNLGFVDSFR 191
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
QE R+ + + ++ +S + KLS HCP
Sbjct: 192 NCVQEAHHYSWWSYRSNARKNNKGW--RIDYVMVSSSLKEKIRNA--YLLSDVKLSDHCP 247
Query: 114 LTIEY 118
+ +E
Sbjct: 248 VVLEI 252
>gi|257413807|ref|ZP_04744296.2| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|257202214|gb|EEV00499.1| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|291538795|emb|CBL11906.1| exodeoxyribonuclease III [Roseburia intestinalis XB6B4]
Length = 256
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 31/131 (23%), Gaps = 24/131 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ P ++ GD N I + + +
Sbjct: 131 RAYLK-RLDGSKPVILCGDLNVAHEEIDLKNPKTNRKNAGFSDEEREKMTKLLDAGFTDT 189
Query: 52 LIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + R ++ D + + S
Sbjct: 190 FRYFYPDTEQIYSWWSYRFRAREKNAGWRIDYFITSKRMNDKLTGAKIHT----DVFGSD 245
Query: 111 HCPLTIEYDFE 121
HCP+ ++ D
Sbjct: 246 HCPVELDIDLS 256
>gi|255536052|ref|YP_003096423.1| Exodeoxyribonuclease III [Flavobacteriaceae bacterium 3519-10]
gi|255342248|gb|ACU08361.1| Exodeoxyribonuclease III [Flavobacteriaceae bacterium 3519-10]
Length = 254
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 31/127 (24%), Gaps = 23/127 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGL 51
++ KT +I+GDFN I + F + +
Sbjct: 130 QYIKNLKKTIPNLIISGDFNICHKPIDIHNPEGLKNASGFLPIEREWLSKFIDECELIDS 189
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F + + R S D + + S H
Sbjct: 190 FRYFNDQPDYYTWWSYRQNSRERNKGWRLDYNFVSNSLKEKLSRAVI----LKEVFHSDH 245
Query: 112 CPLTIEY 118
CP+ +E
Sbjct: 246 CPVLVEI 252
>gi|153853826|ref|ZP_01995182.1| hypothetical protein DORLON_01173 [Dorea longicatena DSM 13814]
gi|149753576|gb|EDM63507.1| hypothetical protein DORLON_01173 [Dorea longicatena DSM 13814]
Length = 250
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 30/132 (22%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + ++ P + GD N I + + +
Sbjct: 124 DAFLAYLKK-LEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTNLLNAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + R + D I
Sbjct: 183 IDTFRYFYPDAEGIYSWWSYRFSARKKNAGWRIDYFCVSESLKDRIKDAKILTEIMG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ ++++
Sbjct: 240 -SDHCPVELDFE 250
>gi|114566736|ref|YP_753890.1| DNA-(apurinic or apyrimidinic site) lyase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|114337671|gb|ABI68519.1| DNA-(apurinic or apyrimidinic site) lyase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 237
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 32/130 (24%), Gaps = 22/130 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E+L + ++ K VI GDFN I + +
Sbjct: 111 EYLINFCEELKKRYPRLVICGDFNTAHREIDLKNPKANEGRSGFLPIEREMLDRFLSYGY 170
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
EK R ++ D I+ + D
Sbjct: 171 VDAFRYLYPEKVQYSWWSYRTRARERNAGWRIDCFYVSEKLLDDIIDCEVLDHIPG---- 226
Query: 109 STHCPLTIEY 118
S HCP+ +
Sbjct: 227 SDHCPIALYL 236
>gi|92113745|ref|YP_573673.1| exodeoxyribonuclease III [Chromohalobacter salexigens DSM 3043]
gi|91796835|gb|ABE58974.1| Exodeoxyribonuclease III [Chromohalobacter salexigens DSM 3043]
Length = 276
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 12/143 (8%), Positives = 28/143 (19%), Gaps = 27/143 (18%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQK 45
L ++ + GDFN I + +
Sbjct: 132 RLTTLLQERHTPSERLAVMGDFNISPADIDIGIGEANRKRWLREGKTSFQPVEREWLARL 191
Query: 46 --MDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSD 100
E + R++ ++ + +
Sbjct: 192 VDWGLSDCYRLRYPEVDDRFSWFDYRSRGFERDPKRGLRIDYIMVTPALCERVTDAGIDY 251
Query: 101 LDTRRSKLSTHCPLTIEYDFEKG 123
+ S H P+ + + G
Sbjct: 252 ELRGIQRPSDHAPVWAQLACDAG 274
>gi|212694611|ref|ZP_03302739.1| hypothetical protein BACDOR_04139 [Bacteroides dorei DSM 17855]
gi|237711123|ref|ZP_04541604.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|237727489|ref|ZP_04557970.1| exodeoxyribonuclease [Bacteroides sp. D4]
gi|265750710|ref|ZP_06086773.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|212663112|gb|EEB23686.1| hypothetical protein BACDOR_04139 [Bacteroides dorei DSM 17855]
gi|229434345|gb|EEO44422.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|229454967|gb|EEO60688.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|263237606|gb|EEZ23056.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
Length = 252
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 31/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + + ++ P ++ GD N I + + +
Sbjct: 128 RAYLKK-LEEKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKFTTLLESGFTDT 186
Query: 52 LIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F E+E R K+ D + S
Sbjct: 187 FRYFYPEQEGIYSWWSYRFKAREKNAGWRIDYFLTSDSLKDKLRGAQIHTDILG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +
Sbjct: 243 HCPVELTIEL 252
>gi|302524148|ref|ZP_07276490.1| exodeoxyribonuclease III [Streptomyces sp. AA4]
gi|302433043|gb|EFL04859.1| exodeoxyribonuclease III [Streptomyces sp. AA4]
Length = 282
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 19/130 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------D 49
L + + G V+ GD+N +++ + + + D
Sbjct: 148 LVELRAKSAAEGREVVVVGDWNIAYDTVDLKNWRGNQKNSGFLPEEREWMGRVYEAGYTD 207
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
P+ R K+ + D + + + S ++ + S
Sbjct: 208 VQRRLDPEGPGPYTWWSYRGKAFDNDSGWRIDCQLATPGLAEKVKSVVVERAESYDQRWS 267
Query: 110 THCPLTIEYD 119
H P+T YD
Sbjct: 268 DHAPVTATYD 277
>gi|94495762|ref|ZP_01302342.1| exodeoxyribonuclease III [Sphingomonas sp. SKA58]
gi|94425150|gb|EAT10171.1| exodeoxyribonuclease III [Sphingomonas sp. SKA58]
Length = 262
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINS----------------IGDTDDFWQKMDPD 49
+ L++ A + +P V+AGD+N + + ++
Sbjct: 129 MDRLRRRAAEIWTEEVPAVLAGDYNVIPRDVDTFSVKAMADDALMQPESRAAYRRMLNDG 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ +++ + L+ + ++ R K
Sbjct: 189 WTDAILSRHPAGGVWTFWDYQANSWPRDAGFRIDHLLLSPAAADRLIDARVDRDFRGREK 248
Query: 108 LSTHCPLTIEYD 119
S H P +E
Sbjct: 249 ASDHAPTWVELR 260
>gi|315634109|ref|ZP_07889398.1| exodeoxyribonuclease III [Aggregatibacter segnis ATCC 33393]
gi|315477359|gb|EFU68102.1| exodeoxyribonuclease III [Aggregatibacter segnis ATCC 33393]
Length = 267
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD-------------------------TDDFW 43
L+++ +Q P +I GD N + + +
Sbjct: 132 LQRYLEQDHNAQNPVIIMGDMNISPSDLDIGIGEENRKRWLRTGKCSFLPEEREWYQRLY 191
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
D P + R+K D + D+ + V +
Sbjct: 192 AYGLEDTFRYLNPTVNDKFSWFDYRSKGFNDNRGLRIDHILANKALAAHCVDSGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMDKPSDHAPIWAEF 266
>gi|254293701|ref|YP_003059724.1| exodeoxyribonuclease III Xth [Hirschia baltica ATCC 49814]
gi|254042232|gb|ACT59027.1| exodeoxyribonuclease III Xth [Hirschia baltica ATCC 49814]
Length = 259
Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 32/133 (24%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMD 47
+ L A + + V+AGD+N D Q M
Sbjct: 127 MDRLNARAKELLSYEEAVVLAGDYNCIPRDEDCYDPAAWVDDALAQPETRGKFRELQWMG 186
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + I D+ + + S +K
Sbjct: 187 YTEGFAARDNRGHQYTFWDYQAGAWQKDNGIRIDHLLCSPQAADKLKSVSIYKDARGMTK 246
Query: 108 LSTHCPLTIEYDF 120
S H P+ E++
Sbjct: 247 PSDHVPIIGEFEL 259
>gi|313499091|gb|ADR60457.1| Exonuclease III [Pseudomonas putida BIRD-1]
Length = 270
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/138 (10%), Positives = 29/138 (21%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ + + + P ++ GD N + +
Sbjct: 133 LQALLESQFRNDQPVLVMGDMNISPQDCDIGIGPDNAKRWLKTGKCSFLPEEREWMERLK 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
E + R++ D + I +
Sbjct: 193 GWGLVDSFRHLYPEVTDRFSWFDYRSRGFEDEPKRGLRIDLIMASQQLVPRIKAAGVDYE 252
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 253 LRGMEKPSDHAPIWLELS 270
>gi|259416092|ref|ZP_05740012.1| endonuclease/exonuclease/phosphatase [Silicibacter sp. TrichCH4B]
gi|259347531|gb|EEW59308.1| endonuclease/exonuclease/phosphatase [Silicibacter sp. TrichCH4B]
Length = 333
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 38/141 (26%), Gaps = 22/141 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSI-----------------GDTDDFWQKMD 47
Q WL+ + ++ G P V+ GD N D + +
Sbjct: 193 QAVWLRGRVEDHLEAGDPLVVMGDLNDGPGLDVYEALFGRSSVEIIMGAELFDPHARHLL 252
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSYDQSDLD 102
+ + ++ LDY +I K + Y L
Sbjct: 253 RPNQQGLPTSARFYNHLEGRYFQALLDYIMISPPLQAHQPKWRIWHPFEDAACYGTPTLC 312
Query: 103 TRRSKLSTHCPLTIEYDFEKG 123
S H P+T++ F
Sbjct: 313 QALLTASDHFPVTLDLAFASA 333
>gi|197105436|ref|YP_002130813.1| exodeoxyribonuclease III [Phenylobacterium zucineum HLK1]
gi|196478856|gb|ACG78384.1| exodeoxyribonuclease III [Phenylobacterium zucineum HLK1]
Length = 259
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 31/130 (23%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGL 51
L + A +K P V+AGD+N F +
Sbjct: 129 RLHRHAQNLLKLEEPLVLAGDYNVIPEPRDAEFPKNWEDDALFQPQSRAAFRALKNLGLT 188
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--QSDLDTRRSKLS 109
+ ++ + L+ + + K S
Sbjct: 189 EAYLQADGAPGAYTFWDYQAGAWQRNNGIRIDHALLSPQAADLLRGVTIHRDVRGWEKPS 248
Query: 110 THCPLTIEYD 119
H PL +E D
Sbjct: 249 DHVPLVVELD 258
>gi|50843350|ref|YP_056577.1| exodeoxyribonuclease III [Propionibacterium acnes KPA171202]
gi|50840952|gb|AAT83619.1| exodeoxyribonuclease III [Propionibacterium acnes KPA171202]
gi|315106020|gb|EFT77996.1| exodeoxyribonuclease III [Propionibacterium acnes HL030PA1]
Length = 297
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 38/132 (28%), Gaps = 20/132 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + + G F++ GDFN + + + +
Sbjct: 166 LVRRRQECTTQGRHFLVMGDFNIAHENADLKNWKANQRNEGFLPEERQWFDTILSPDTLI 225
Query: 50 GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + R K+ ++ D + + ++ + + +
Sbjct: 226 DVVRAQHPDTNGPYSWWSWRGKAFVNDAGWRIDYHLASPELASKAITAEIDRDPSYSERT 285
Query: 109 STHCPLTIEYDF 120
S H + ++YD
Sbjct: 286 SDHAAVVVDYDL 297
>gi|269123555|ref|YP_003306132.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
gi|268314881|gb|ACZ01255.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
Length = 251
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 34/132 (25%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + ++ P ++ GD N I +
Sbjct: 125 DEFRSYLKK-LEEKKPVIVCGDLNVAHKEIDLKNPKSNTRSAGFTIEERNKFTELIENGF 183
Query: 50 -GLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +K + R + + F + +S + +
Sbjct: 184 IDTFRYFYPDKIHAYSWWSYRGNARKNNTGW--RIDYFCVSSSLK--DRLVDAEIHDKVE 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ + +
Sbjct: 240 GSDHCPVVLYIN 251
>gi|163737422|ref|ZP_02144839.1| Endonuclease/exonuclease/phosphatase [Phaeobacter gallaeciensis
BS107]
gi|161388948|gb|EDQ13300.1| Endonuclease/exonuclease/phosphatase [Phaeobacter gallaeciensis
BS107]
Length = 331
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 40/138 (28%), Gaps = 22/138 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKIN-----------------SIGDTDDFWQKMD 47
Q WL++ +Q + G+ V+ GD N D Q +
Sbjct: 193 QAIWLRRRVEQLLAEGLDVVVMGDLNDGPGLDQYEQLFNRSSVEIAMESDLYDPNAQSLL 252
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSYDQSDLD 102
L + + + + LDY ++ + Y+ L
Sbjct: 253 QPRLRVMPSSARFYDKANKRYFSALLDYIMVSSGLRQPAANWRIWHPFEDAACYEDVALR 312
Query: 103 TRRSKLSTHCPLTIEYDF 120
S H P++++ D
Sbjct: 313 EALLAASDHFPVSLDLDL 330
>gi|333030574|ref|ZP_08458635.1| Endonuclease/exonuclease/phosphatase [Bacteroides coprosuis DSM
18011]
gi|332741171|gb|EGJ71653.1| Endonuclease/exonuclease/phosphatase [Bacteroides coprosuis DSM
18011]
Length = 288
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 3/107 (2%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC-NVIKRNKSSLD 74
K+ P V+ GDFN + S + + + L ++
Sbjct: 184 KLAKDAPIVLTGDFNAEPESDVIFNVINPEKERHLLSTHEVAQEVKGTNWTFHDYDRLDI 243
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ ++ SY+ + +S HCP+ +F
Sbjct: 244 NK--REYIDYIFVSAPVTVKSYEVLPMKYEGQFVSDHCPVVANIEFN 288
>gi|190150302|ref|YP_001968827.1| exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|189915433|gb|ACE61685.1| exodeoxyribonuclease III [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
Length = 275
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 37/135 (27%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKES----- 61
L+ + + ++ P VI GD N + + ++ DG P+E+E
Sbjct: 140 LQHYLESELSPENPIVIMGDMNISPTDLDIGIGEPNRKRWLRDGKCSFLPEEREWLDRLY 199
Query: 62 ------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D + V
Sbjct: 200 SYGLIDTFRAMNPQANDKFSWFDYRSKGFDDNRGLRIDLVLASKGLAERCVETGIDLEIR 259
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 260 AMEKPSDHSPVWAVF 274
>gi|313816882|gb|EFS54596.1| exodeoxyribonuclease III [Propionibacterium acnes HL059PA1]
gi|315100096|gb|EFT72072.1| exodeoxyribonuclease III [Propionibacterium acnes HL059PA2]
Length = 317
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 38/132 (28%), Gaps = 20/132 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + + G F++ GDFN + + + +
Sbjct: 186 LVRRRQECTTQGRHFLVMGDFNIAHENADLKNWKANQRNEGFLPEERQWFDTILSPDTLI 245
Query: 50 GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + R K+ ++ D + + ++ + + +
Sbjct: 246 DVVRAQHPDTNGPYSWWSWRGKAFVNDAGWRIDYHLASPELASKAITAEIDRDPSYSERT 305
Query: 109 STHCPLTIEYDF 120
S H + ++YD
Sbjct: 306 SDHAAVVVDYDL 317
>gi|302336916|ref|YP_003802122.1| exodeoxyribonuclease III Xth [Spirochaeta smaragdinae DSM 11293]
gi|301634101|gb|ADK79528.1| exodeoxyribonuclease III Xth [Spirochaeta smaragdinae DSM 11293]
Length = 259
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 31/131 (23%), Gaps = 22/131 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD 49
+ + K + + G V+ GD+N I +D
Sbjct: 131 CDAILKRCNSLVGEGRHVVVCGDYNIAHKPIDLARPKENEGNPGFLPEERAWMSSFLDAG 190
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F E + R K F D F ++
Sbjct: 191 YTDTFRIFNNEGGNYTWWSYRTKGRERNVGW--RLDYFCTDKEFEN--RVKNSEIRSEVM 246
Query: 108 LSTHCPLTIEY 118
S HCP+ +
Sbjct: 247 GSDHCPVVLTI 257
>gi|297157838|gb|ADI07550.1| putative exodeoxyribonuclease III [Streptomyces bingchenggensis
BCW-1]
Length = 265
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 34/130 (26%), Gaps = 20/130 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
LK+ ++ G ++ GD+N + +
Sbjct: 134 LKELRERAAAGGREVLVCGDWNIAHREADIKNWKANRKKSGFLPEERAWLSRVYDEAAYV 193
Query: 50 GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + + + R ++ + D + V + +
Sbjct: 194 DVVRKLHPDAEGPYSWWSYRGRAFDNDAGWRIDLLVGTQGLAERAVKAQVERAASYDQRW 253
Query: 109 STHCPLTIEY 118
S H P+T +
Sbjct: 254 SDHAPVTAVF 263
>gi|120610799|ref|YP_970477.1| exodeoxyribonuclease III [Acidovorax citrulli AAC00-1]
gi|120589263|gb|ABM32703.1| Exodeoxyribonuclease III [Acidovorax citrulli AAC00-1]
Length = 262
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 29/128 (22%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ L + A P V+AGDFN ++ + G
Sbjct: 126 DRLARRAGVLRDRPEPVVLAGDFNIIPTERDVYKPGAWVDDALFRSEVRDAFRALVDSGW 185
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + + D+ + + R +
Sbjct: 186 TDALRAVHPDETVYTFWDYLRQRFQRNAGLRIDHLLLNPAAAHRLQDAGVDREVRGRPRP 245
Query: 109 STHCPLTI 116
S H P
Sbjct: 246 SDHAPAWA 253
>gi|115525646|ref|YP_782557.1| exodeoxyribonuclease III Xth [Rhodopseudomonas palustris BisA53]
gi|115519593|gb|ABJ07577.1| exodeoxyribonuclease III Xth [Rhodopseudomonas palustris BisA53]
Length = 256
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 36/131 (27%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT----------------DDFWQKMDPD 49
+ L K A +K+G P VIAGDFN + + + + +
Sbjct: 125 MKRLHKHAGSLLKSGAPVVIAGDFNVAPTELDIYPTKSWNKDALIQPESRNAYAKLVGQG 184
Query: 50 GLL--IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
E+ + D+ D + +V R
Sbjct: 185 WTDAIRSLHPEQRIYSFWTYWRNRFERDDGLRLDHLLLSPDVAPRLVKAGVDRAVRARDG 244
Query: 108 LSTHCPLTIEY 118
S H P+ I
Sbjct: 245 ASDHAPVWIVL 255
>gi|222148978|ref|YP_002549935.1| exonuclease III [Agrobacterium vitis S4]
gi|221735964|gb|ACM36927.1| exonuclease III [Agrobacterium vitis S4]
Length = 264
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 40/133 (30%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
L+++A ++ P ++AGD+N + D + +
Sbjct: 129 MARLQRFAADRLALEEPLILAGDYNVIPHPHDCFDPAVWATDALFLPQTRAAFQALENLG 188
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + + I D+ + + +VS + K
Sbjct: 189 LTDAVRATTDATKLYSFWDYQAGAWQKNNGIRIDHLLLSAEATDRLVSTEIEKHVRSWEK 248
Query: 108 LSTHCPLTIEYDF 120
S H P+ ++F
Sbjct: 249 PSDHVPVIGYFNF 261
>gi|294669077|ref|ZP_06734163.1| exodeoxyribonuclease III [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291309069|gb|EFE50312.1| exodeoxyribonuclease III [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 300
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 176 LEAMKAEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHTLGWTDMWR 235
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 236 TLYPDNPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 291
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 292 LVVEYDY 298
>gi|255323252|ref|ZP_05364387.1| exodeoxyribonuclease III [Campylobacter showae RM3277]
gi|255299775|gb|EET79057.1| exodeoxyribonuclease III [Campylobacter showae RM3277]
Length = 256
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 30/130 (23%), Gaps = 23/130 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DGL 51
+ + +K G + GD N I + D
Sbjct: 128 AYIQELVKQGKDVIFCGDVNTAHREIDLKNPKANAKTSGFLPIERAWLDEVVACGFIDTF 187
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++ R + F I +S + S H
Sbjct: 188 RHVRGDAADAYSWWSYRFNARAKNVGW--RIDYFFISSSLK--DRLKDAFILSDITGSDH 243
Query: 112 CPLTIEYDFE 121
CP+ IE D E
Sbjct: 244 CPVGIEIDLE 253
>gi|182417077|ref|ZP_02948455.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
butyricum 5521]
gi|237667663|ref|ZP_04527647.1| endonuclease/exonuclease/phosphatase [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182379086|gb|EDT76590.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
butyricum 5521]
gi|237656011|gb|EEP53567.1| endonuclease/exonuclease/phosphatase [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 258
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 6/119 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L + E +++ ++IK +P +I GDFN +S + + +K
Sbjct: 145 LKRLMELIEE---EQIKEDLPIIIMGDFNSGPDSKLIKNLSSGVYGSKKVSAVQEYDKRL 201
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ S + F + + + + S H PL E +
Sbjct: 202 Y---MNSTMSMFKGKEKGLHIDYIFVSEEFKVNNVEIVRYNENGKYPSDHYPLMAEIEL 257
>gi|309812281|ref|ZP_07706036.1| exodeoxyribonuclease III [Dermacoccus sp. Ellin185]
gi|308433586|gb|EFP57463.1| exodeoxyribonuclease III [Dermacoccus sp. Ellin185]
Length = 262
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/136 (10%), Positives = 26/136 (19%), Gaps = 27/136 (19%)
Query: 11 KWADQKIKTGI---------PFVIAGDFNRKINSIGDTDDFW---------------QKM 46
W G + GD+N D + Q M
Sbjct: 127 DWLAALRADGEKWLTENPEAQIALTGDWNIAPRDEDVWDPAFFEGKTHVTQPERDAFQAM 186
Query: 47 DPDGLLIRFPQEKE---STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
G + + D + + +
Sbjct: 187 IDTGYADVVRPHTNEPRTYTYWDYTQLRFPKKQGMRIDFALCSPALAGRVQGAVIDRDER 246
Query: 104 RRSKLSTHCPLTIEYD 119
+ S H P+ ++ D
Sbjct: 247 KGKGASDHAPVIVQLD 262
>gi|289435119|ref|YP_003464991.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171363|emb|CBH27905.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 251
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 34/132 (25%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P V+ GD N I + + +
Sbjct: 124 DAILAYVKK-LDETKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFTAFLEAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + +++ R + D ++V
Sbjct: 183 VDSFRYFYPDLEDAYSWWSYRMNARARNIGWRIDYFVVSERLKDNLVDAKIHPDVLG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ +E +
Sbjct: 240 -SDHCPVELELN 250
>gi|227494321|ref|ZP_03924637.1| exodeoxyribonuclease III; exonuclease III [Actinomyces coleocanis
DSM 15436]
gi|226832055|gb|EEH64438.1| exodeoxyribonuclease III; exonuclease III [Actinomyces coleocanis
DSM 15436]
Length = 255
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 10/126 (7%), Positives = 34/126 (26%), Gaps = 16/126 (12%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLL 52
L+ + + + + GD+N D ++ G+
Sbjct: 129 ALRDYMVETM-HDRKVALVGDWNVAPFDHDVWDIKAFEGATHVSVPEREAFRAFAEIGMT 187
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ ++ + + D + ++ + + + S H
Sbjct: 188 EVTRERVDNYTYWDYQKLRFPKNEGMRIDFVYASPALTETVTAAHIDRDERKGKGASDHV 247
Query: 113 PLTIEY 118
P+ +++
Sbjct: 248 PVIVDF 253
>gi|225569150|ref|ZP_03778175.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
gi|225161949|gb|EEG74568.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
Length = 250
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 30/131 (22%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + ++ P + GD N I + + +
Sbjct: 124 DAFLAYLKK-LEEKKPVIFCGDLNVAAEEIDLKNPKTNRKNAGFTDEEREKFRKIKASGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++E R ++ D +
Sbjct: 183 VDTFRYFYPDEEGIYSWWSYRFRAREKNAGWRIDYFCVSQSLKERLEDARIHT----DVM 238
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 239 GSDHCPVELDL 249
>gi|91205020|ref|YP_537375.1| exodeoxyribonuclease III [Rickettsia bellii RML369-C]
gi|157827649|ref|YP_001496713.1| exodeoxyribonuclease III [Rickettsia bellii OSU 85-389]
gi|91068564|gb|ABE04286.1| Exodeoxyribonuclease III [Rickettsia bellii RML369-C]
gi|157802953|gb|ABV79676.1| Exodeoxyribonuclease III [Rickettsia bellii OSU 85-389]
Length = 261
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 28/126 (22%), Gaps = 18/126 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------QKMDPD--GLL 52
+ K +I GDFN I ++
Sbjct: 133 NYLSSKKSFDEKTIIGGDFNIAPFDIDVYSPTALANTTCFTEIEQKKMRTILNSGFEDCY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+K+ R + D ++ + + + K S H
Sbjct: 193 RFLHPKKQEFSWWDYRAGCFEQNKGMRIDMILGSNNSIDYLENCYMDYNLRTKEKPSDHI 252
Query: 113 PLTIEY 118
P+ +
Sbjct: 253 PVIANF 258
>gi|302876908|ref|YP_003845541.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|307687596|ref|ZP_07630042.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|302579765|gb|ADL53777.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
Length = 253
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 24/129 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + ++ P ++ GD N I + + +P
Sbjct: 124 DAFRAYLKK-LEKNKPVIVCGDLNVAHKEIDLKNPKTNRKNPGFSDEERAKFSELLASGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + + R + D + +VS + +
Sbjct: 183 IDTYRYFYPDKEGAYSWWSYRFNARTKNAGWRIDYFVISEELKDKLVSAEIHNEILG--- 239
Query: 108 LSTHCPLTI 116
S HCP+ +
Sbjct: 240 -SDHCPVEL 247
>gi|90412878|ref|ZP_01220878.1| hypothetical protein P3TCK_26405 [Photobacterium profundum 3TCK]
gi|90326237|gb|EAS42664.1| hypothetical protein P3TCK_26405 [Photobacterium profundum 3TCK]
Length = 320
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 19/134 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL----IRFPQ 57
L++Q E L++W D++ +PF+I GDFNR++ D WQ++D +
Sbjct: 191 LNRQFEVLEQWVDRRAAEPLPFMILGDFNRRLTL--HNDQMWQQLDDGRPTGLSLYAATE 248
Query: 58 EKESTCNVI-----------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
++S C + + + +D+ V+D K +++NSF ++ D +
Sbjct: 249 GQKSQCRIRIHSKHKKHRKIRHYPNFIDHIVLDERAKQKMVNNSFRELTSDV--EVVKAF 306
Query: 107 KLSTHCPLTIEYDF 120
LS HCP+T+
Sbjct: 307 NLSDHCPITLSLSL 320
>gi|299534838|ref|ZP_07048167.1| endonuclease yhcR precursor [Lysinibacillus fusiformis ZC1]
gi|298729683|gb|EFI70229.1| endonuclease yhcR precursor [Lysinibacillus fusiformis ZC1]
Length = 1375
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + D+ + + ++AGD N + + +I E++
Sbjct: 1143 QLAQAINDFIDEGLAINPDLNIIVAGDMNDFEFTPALQTLKGDVL---TNMIDKAPEQDR 1199
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N LD+ ++ + + I ++ + + S H P+ ++ D +
Sbjct: 1200 FTYFFQGNNQVLDHILVSNKLADVTEIDLIHI----NANFTEAQGRASDHDPVLVQIDLK 1255
Query: 122 KGN 124
N
Sbjct: 1256 ADN 1258
>gi|288576120|ref|ZP_06394182.1| exodeoxyribonuclease III [Neisseria mucosa ATCC 25996]
gi|288566274|gb|EFC87834.1| exodeoxyribonuclease III [Neisseria mucosa ATCC 25996]
Length = 122
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 31/122 (25%), Gaps = 18/122 (14%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDP---DGLLIRFPQE 58
+ V+ GDFN D +++ + L + E
Sbjct: 1 MTRHEKLVLLGDFNIAPADADCYDPEKWHEKIHCSSIERQWFKNLLDLGLTDSLRQIHPE 60
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + D++ S + + + S H P+ E+
Sbjct: 61 GAFYTWFDYRGAMFQRKLGLRIDHQLISPALSAVLKDVYVDLDARAQERPSDHAPVVAEF 120
Query: 119 DF 120
D
Sbjct: 121 DL 122
>gi|258621396|ref|ZP_05716430.1| exodeoxyribonuclease III [Vibrio mimicus VM573]
gi|262171177|ref|ZP_06038855.1| exodeoxyribonuclease III [Vibrio mimicus MB-451]
gi|258586784|gb|EEW11499.1| exodeoxyribonuclease III [Vibrio mimicus VM573]
gi|261892253|gb|EEY38239.1| exodeoxyribonuclease III [Vibrio mimicus MB-451]
Length = 268
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/142 (9%), Positives = 28/142 (19%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q L + + V+ GD N +
Sbjct: 126 KRQFYRDLMTYLREHRSNTERLVVMGDINISPLDLDIGIGEANRKRWLQTGKCSFQPEER 185
Query: 39 -TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ E + R++ D + D + +
Sbjct: 186 EWLQTLMDWGLVDTFRQLHPEVSDQFSWFDYRSRGFDDNRGLRIDVILATPTLAETCQEA 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRGIDKPSDHAPIWATF 267
>gi|320354727|ref|YP_004196066.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
gi|320123229|gb|ADW18775.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
Length = 481
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 37/142 (26%), Gaps = 29/142 (20%)
Query: 2 LSQQG------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + L + D ++++ V+ GD N I + +P
Sbjct: 345 LKRLAFKQEFNRTLLAYMD-RLRSEKTVVLCGDLNVAHKEIDLANPKANVKNPGFSEQER 403
Query: 50 ------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+F QE R + D + ++
Sbjct: 404 AWMDELIAAGYVDTFRQFNQEAGQYTWWSYRFNARAKNIGWRIDYFIVDGSSRDRVLEAA 463
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
T S HCP+++ +
Sbjct: 464 IHGEITG----SDHCPVSLLFR 481
>gi|295107237|emb|CBL04780.1| exodeoxyribonuclease III [Gordonibacter pamelaeae 7-10-1-b]
Length = 285
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 23/124 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRFPQ--- 57
+ P V+ GDFN I + + + G + F +
Sbjct: 166 ETAAPKPVVMCGDFNVAHQEIDLKNPGPNRGKAGFSDEERGKFTDLLEAGFVDTFRRLHP 225
Query: 58 -EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ R K+ + D + + S D S HCP+ +
Sbjct: 226 DVTGAYSWWSYRFKARQNNAGWRIDYFLVSESLAPKVASACIYDE----VYGSDHCPVGL 281
Query: 117 EYDF 120
E +
Sbjct: 282 ELEL 285
>gi|237800675|ref|ZP_04589136.1| exonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331023534|gb|EGI03591.1| exonuclease III [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 270
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 29/144 (20%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ E L+ + P ++ GD N
Sbjct: 127 QRFYENLQSLLESHFSNEQPLIVMGDVNISPEDCDIGIGADNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVS 95
+ + E + R++ D + I +
Sbjct: 187 WMERLKNWGLVDSFRYLNPEVSDRFSWFDYRSRGFEDEPKRGLRIDLIMTSTGLQPRIKA 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 247 AGVDYDLRGMEKPSDHAPIWLELS 270
>gi|126739194|ref|ZP_01754888.1| endonuclease/exonuclease/phosphatase family protein [Roseobacter
sp. SK209-2-6]
gi|126719811|gb|EBA16519.1| endonuclease/exonuclease/phosphatase family protein [Roseobacter
sp. SK209-2-6]
Length = 331
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 22/139 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-----------------DDFWQKMD 47
Q WL + Q ++ ++ GD N D Q +
Sbjct: 193 QAIWLHRRVKQHVQAREDLIVLGDLNDGPGLDEYERLFGRSSVEIVMGQELTDPHAQSLL 252
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSYDQSDLD 102
+ + + + LDY +I K + Y+ DL
Sbjct: 253 KPRRHVLPSTSRFFNPETKRYFSALLDYVMISNSLLSGEPKWRIWHPFEDAECYEDEDLR 312
Query: 103 TRRSKLSTHCPLTIEYDFE 121
S H P+T++ +
Sbjct: 313 NALLAASDHFPVTLDLNLS 331
>gi|326774141|ref|ZP_08233423.1| exodeoxyribonuclease III [Actinomyces viscosus C505]
gi|326636280|gb|EGE37184.1| exodeoxyribonuclease III [Actinomyces viscosus C505]
Length = 277
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 34/133 (25%), Gaps = 21/133 (15%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------------FWQKM 46
+ + G V+AGD N + + F
Sbjct: 145 RMAELLAAARDGGPQVVMAGDLNVVRSERDIKNWKPNHNKIAGVMDEEIAHLEGWFASGW 204
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ +E+ +R K+ + D + + S S
Sbjct: 205 VDASRHLVGDEEQGPYTWWSQRGKAFDNNAGWRIDYQVLTPALAERAHSVTVDRAPDYAS 264
Query: 107 KLSTHCPLTIEYD 119
+ S H PL +EY
Sbjct: 265 RWSDHAPLVVEYR 277
>gi|26989609|ref|NP_745034.1| exonuclease III [Pseudomonas putida KT2440]
gi|24984490|gb|AAN68498.1|AE016481_14 exodeoxyribonuclease III [Pseudomonas putida KT2440]
Length = 270
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/138 (9%), Positives = 29/138 (21%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ + + + P ++ GD N + +
Sbjct: 133 LQALLESQFRNDQPVLVMGDMNISPQDCDIGIGPDNAKRWLKTGKCSFLPEEREWMERLK 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
+ + R++ D + I +
Sbjct: 193 GWGLVDSFRHLYPDVTDRFSWFDYRSRGFEDEPKRGLRIDLIMASQQLVPRIKAAGVDYE 252
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 253 LRGMEKPSDHAPIWLELS 270
>gi|148548014|ref|YP_001268116.1| exonuclease III [Pseudomonas putida F1]
gi|148512072|gb|ABQ78932.1| Exodeoxyribonuclease III [Pseudomonas putida F1]
Length = 270
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 14/138 (10%), Positives = 29/138 (21%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ + + + P ++ GD N + +
Sbjct: 133 LQALLESQFRNDQPVLVMGDMNISPQDCDIGIGPDNAKRWLKTGKCSFLPEEREWMERLK 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
E + R++ D + I +
Sbjct: 193 GWGLVDSFRHLYPEVTDRFSWFDYRSRGFEDEPKRGLRIDLIMASQPLVPRIKAAGVDYE 252
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 253 LRGMEKPSDHAPIWLELS 270
>gi|325285209|ref|YP_004260999.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
gi|324320663|gb|ADY28128.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
Length = 254
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 39/135 (28%), Gaps = 25/135 (18%)
Query: 7 EWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQK 45
+W K + D + ++ P + GDFN +I +D +
Sbjct: 124 QWDKDFLDYLKNLEKKKPVIACGDFNVAHKAIDLKNDKSNYNKTAGYTQTEIDGMNNFIA 183
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
++ R KS FL+ S + +
Sbjct: 184 DGFVDSFRMLHPDEVVYTFWSYRFKSRERNTGW--RIDYFLVSQSIKDKVKEVTVFS--D 239
Query: 106 SKLSTHCPLTIEYDF 120
S HCP+ ++ DF
Sbjct: 240 IMGSDHCPIGLKIDF 254
>gi|325854960|ref|ZP_08171676.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
gi|325483938|gb|EGC86878.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
Length = 249
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 27/121 (22%), Gaps = 22/121 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
++ P V+ GD N I + + +
Sbjct: 132 RLDRKKPVVVCGDMNVAHEEIDIKNPKTNRRNAGFTDEEREKMTQLLDSGFIDTFRTLYP 191
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E+ + R ++ D + S HCP+ ++
Sbjct: 192 EQVTYSWWSYRFRARERNTGWRIDYFLISERLRDRLEDAKIHTEIMG----SDHCPVEVD 247
Query: 118 Y 118
Sbjct: 248 L 248
>gi|313632791|gb|EFR99747.1| exodeoxyribonuclease III [Listeria seeligeri FSL N1-067]
Length = 251
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 34/132 (25%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P V+ GD N I + + +
Sbjct: 124 DAILAYVKK-LDETKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFTAFLEAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + +++ R + D ++V
Sbjct: 183 VDSFRYFYPDLEDAYSWWSYRMNARARNIGWRIDYFVVSERLKDNLVDAKIHPDVLG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ +E +
Sbjct: 240 -SDHCPVELELN 250
>gi|294674336|ref|YP_003574952.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
gi|294473057|gb|ADE82446.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
Length = 249
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/127 (10%), Positives = 28/127 (22%), Gaps = 23/127 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + + P ++ GD N I + +M+
Sbjct: 127 RAYLKG-LDAKKPVILCGDLNVAHQEIDLKNPKTNRMNAGFTDQEREQFSTLLASGFTDS 185
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E+ + R ++ D + S H
Sbjct: 186 FRYKYPEQVTYSWWSYRFQARQKNAGWRIDYFVISDRLRERMDDARIHTQILG----SDH 241
Query: 112 CPLTIEY 118
CP+ +
Sbjct: 242 CPVELTL 248
>gi|226304979|ref|YP_002764937.1| exodeoxyribonuclease III [Rhodococcus erythropolis PR4]
gi|226184094|dbj|BAH32198.1| putative exodeoxyribonuclease III [Rhodococcus erythropolis PR4]
Length = 266
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 11/135 (8%), Positives = 32/135 (23%), Gaps = 20/135 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------ 43
L++ + + W Q + GD+N D +
Sbjct: 133 LAKLRDDAEGWLKQ--DPDAQIALVGDWNVAPTDDDVWDPAFFEGKTHTSEPERAAFTAF 190
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ ++ + + D + + + + +
Sbjct: 191 TESGFADVVRPYTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPAFAARVEAAEIDRNER 250
Query: 104 RRSKLSTHCPLTIEY 118
+ S H P+ ++
Sbjct: 251 KGKGASDHAPVIVKL 265
>gi|237749208|ref|ZP_04579688.1| exodeoxyribonuclease III [Oxalobacter formigenes OXCC13]
gi|229380570|gb|EEO30661.1| exodeoxyribonuclease III [Oxalobacter formigenes OXCC13]
Length = 260
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 34/127 (26%), Gaps = 21/127 (16%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLL 52
+ + +G FVI GD+N I + + ++ +
Sbjct: 133 YLKKLKDSGREFVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWLTDVFDELGWVDVY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ N+ + + + + + + S H
Sbjct: 193 RLLHPDTTGEAYTWWSNRGQAYAKNVGWRIDYQIATPGIAKKAVSADIY--KGERFSDHA 250
Query: 113 PLTIEYD 119
PLTI YD
Sbjct: 251 PLTIRYD 257
>gi|28211273|ref|NP_782217.1| exodeoxyribonuclease III [Clostridium tetani E88]
gi|28203713|gb|AAO36154.1| exodeoxyribonuclease III [Clostridium tetani E88]
Length = 260
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 22/135 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ + + + + G +I GD+N I + +
Sbjct: 130 DAILDYCNDLVSKGKKLIICGDYNTAHREIDLKNPKNNEKYSGFLPIEREWIDKFINNGY 189
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ F EK R K+ F + ++ + +
Sbjct: 190 VDVYRNFYPEKVEYSWWSYRFKARERNAGW--RIDYFFVSDNVLPLI--KDTKIHTEVLG 245
Query: 109 STHCPLTIEYDFEKG 123
S HCP+ + D +K
Sbjct: 246 SDHCPIELILDIQKA 260
>gi|312144054|ref|YP_003995500.1| exodeoxyribonuclease III Xth [Halanaerobium sp. 'sapolanicus']
gi|311904705|gb|ADQ15146.1| exodeoxyribonuclease III Xth [Halanaerobium sp. 'sapolanicus']
Length = 254
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 22/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
++A++ + G V++GD+N + + + K
Sbjct: 131 EYAEELREEGKGVVVSGDYNTAHHPLDLKNPDANKNTSGFLEIEREWLDKLENHGFIDTY 190
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
F +KE+ R ++ D + ++ D S HC
Sbjct: 191 RYFYPDKETYSWWSYRTRARERNAGWRIDYHFISEELEDNLNHSDILT----DVMGSDHC 246
Query: 113 PLTIEYDF 120
P+T++ F
Sbjct: 247 PVTVDLKF 254
>gi|203284438|ref|YP_002222178.1| exodeoxyribonuclease III [Borrelia duttonii Ly]
gi|201083881|gb|ACH93472.1| exodeoxyribonuclease III [Borrelia duttonii Ly]
Length = 254
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 22/128 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------G 50
L+ A+ + +G ++ GDFN I ++ +
Sbjct: 129 LESIANSFVTSGKNLIVCGDFNIAHTEIDLSNPKTSRESAGFYVEETNWMDNFLNRGYVD 188
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +E + + ++ F+I+ +F + L + S
Sbjct: 189 TFRMFNKEPGNYTWWDYKTRARERNVGW--RIDYFVINKAFQSK--VKDALILNKVMGSD 244
Query: 111 HCPLTIEY 118
HCP+ ++
Sbjct: 245 HCPVFLKL 252
>gi|323344424|ref|ZP_08084649.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
gi|323094551|gb|EFZ37127.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
Length = 249
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 26/121 (21%), Gaps = 22/121 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
+ P ++ GD N I + + + E
Sbjct: 133 LDARKPVIVCGDMNVAHEEIDIKNPKTNRRNAGFTDEEREKMTELLAGGFIDTFRTLYPE 192
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + R ++ D I S HCP+ ++
Sbjct: 193 QVTYSWWSYRFRARERNTGWRIDYFLISERLKERIADAKIHT----DIYGSDHCPIELDL 248
Query: 119 D 119
Sbjct: 249 R 249
>gi|315126445|ref|YP_004068448.1| exonuclease III [Pseudoalteromonas sp. SM9913]
gi|315014959|gb|ADT68297.1| exonuclease III [Pseudoalteromonas sp. SM9913]
Length = 268
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/143 (11%), Positives = 35/143 (24%), Gaps = 26/143 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------T 39
+Q + L + ++ GD N +
Sbjct: 126 KRQFYQDLMTHLNSHYTPDQDVIVMGDINISPTDLDIGIGEVNAKRWLKTGKCSFQPVER 185
Query: 40 DDFWQKMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ ++ Q E+ R+K +D + D D + +
Sbjct: 186 EWLATLLNWGFKDTFREQNPETNDQYSWFDYRSKGFVDNRGLRIDVVLATHDLAARCIDT 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ E++
Sbjct: 246 GIDYELRAIDKPSDHAPIWSEFN 268
>gi|331699058|ref|YP_004335297.1| exodeoxyribonuclease III Xth [Pseudonocardia dioxanivorans CB1190]
gi|326953747|gb|AEA27444.1| exodeoxyribonuclease III Xth [Pseudonocardia dioxanivorans CB1190]
Length = 268
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 31/132 (23%), Gaps = 19/132 (14%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI------------ 53
+L + ++ V+ GD+N + + L
Sbjct: 135 APYLAERREKAAAEDREVVVCGDWNIAHTEADIRNWRGNVRNSGFLPHERAWLGELYGSG 194
Query: 54 -------RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
P R ++ + D + S +
Sbjct: 195 WVDVVRSLHPGVDGPYSWWSYRGRAFDNDTGWRIDLHVATAGLAARASSAVVERAPSHAE 254
Query: 107 KLSTHCPLTIEY 118
+ S H P+T+ Y
Sbjct: 255 RWSDHAPVTVRY 266
>gi|159906029|ref|YP_001549691.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
gi|159887522|gb|ABX02459.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
Length = 249
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 36/135 (26%), Gaps = 25/135 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------ 49
+Q +W + + + + ++ P + GD N + + +
Sbjct: 119 RQ-KWDQDFLNYVKTLENKKPVIFCGDLNVAHKEVDLKNPKTNVKNAGFTPEERKGFDNI 177
Query: 50 ------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
F +E ++ R + F I S +
Sbjct: 178 VNSGFLDTFREFNKEPDNYSWWSYRFNARARNIGW--RIDYFCISESLRGNL--KDAFIM 233
Query: 104 RRSKLSTHCPLTIEY 118
S HCP+ I +
Sbjct: 234 PEIMGSDHCPVGIIF 248
>gi|28869934|ref|NP_792553.1| exodeoxyribonuclease III [Pseudomonas syringae pv. tomato str.
DC3000]
gi|28853179|gb|AAO56248.1| exodeoxyribonuclease III [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 270
Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 29/144 (20%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ E L+ + P ++ GD N
Sbjct: 127 QRFYENLQALLEGHFSNEQPLIVMGDVNISPQDCDIGIGADNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVS 95
+ + E + R++ D + I +
Sbjct: 187 WMERLKNWGLVDSFRYLYPEVSDRFSWFDYRSRGFEDEPKRGLRIDLIMTSTGLQPRIRA 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 247 AGVDYDLRGMEKPSDHAPIWLELS 270
>gi|291528729|emb|CBK94315.1| exodeoxyribonuclease III [Eubacterium rectale M104/1]
Length = 251
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+++ + P V+ GD N N I + + +
Sbjct: 127 REYLKT-LDAKKPVVLCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAKMTELLGSGFTDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + R K+ D + + S
Sbjct: 186 FRYFYPDAEGIYSWWSYRFKAREKNAGWRIDYFITSKRINDKLQKAAIHTDVLG----SD 241
Query: 111 HCPLTIEYDF 120
HCP+ ++ +F
Sbjct: 242 HCPVEVDIEF 251
>gi|224024813|ref|ZP_03643179.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
gi|224018043|gb|EEF76047.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
Length = 251
Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 29/123 (23%), Gaps = 23/123 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
++ P ++ GD N I + +M+ F
Sbjct: 132 ELDKKKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQILLDAGFIDTFRYFYP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
E R K+ D + + S S HCP+ +
Sbjct: 192 EQTGIYSWWSYRFKAREKNAGWRIDYFLASRRLADKLESAKIHTEIFG----SDHCPVEV 247
Query: 117 EYD 119
+
Sbjct: 248 TLN 250
>gi|297739882|emb|CBI30064.3| unnamed protein product [Vitis vinifera]
Length = 542
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 28/132 (21%), Gaps = 24/132 (18%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------ 49
L + + ++ P ++ GD N I D +
Sbjct: 416 ALGSYMKE-LEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTDEERQSLEKNFLSKGF 474
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ RN FL+ S +
Sbjct: 475 VDSFRKQHPGVVGYTYWGYRNGCRKSNKGW--RLDYFLVSESIADK--VHDSYILPDIGG 530
Query: 109 STHCPLTIEYDF 120
S HCP+ +
Sbjct: 531 SDHCPIGLVLKL 542
>gi|225441351|ref|XP_002274714.1| PREDICTED: similar to apurinic endonuclease-redox protein [Vitis
vinifera]
Length = 490
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 28/132 (21%), Gaps = 24/132 (18%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------ 49
L + + ++ P ++ GD N I D +
Sbjct: 364 ALGSYMKE-LEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTDEERQSLEKNFLSKGF 422
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ RN FL+ S +
Sbjct: 423 VDSFRKQHPGVVGYTYWGYRNGCRKSNKGW--RLDYFLVSESIADK--VHDSYILPDIGG 478
Query: 109 STHCPLTIEYDF 120
S HCP+ +
Sbjct: 479 SDHCPIGLVLKL 490
>gi|167759302|ref|ZP_02431429.1| hypothetical protein CLOSCI_01649 [Clostridium scindens ATCC 35704]
gi|167663176|gb|EDS07306.1| hypothetical protein CLOSCI_01649 [Clostridium scindens ATCC 35704]
Length = 250
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 31/133 (23%), Gaps = 25/133 (18%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+W + +K++ P + GD N I + + +
Sbjct: 120 MQWEDDFLAYLKKLEEAKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKFTSLVD 179
Query: 50 ----GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
F + + R + D +V
Sbjct: 180 AGFIDTFRYFYPDAQGIYSWWSYRFSARAKNAGWRIDYFCVSESLEERLVDAKILT---- 235
Query: 105 RSKLSTHCPLTIE 117
S HCP+ +E
Sbjct: 236 DVMGSDHCPIVLE 248
>gi|291546831|emb|CBL19939.1| exodeoxyribonuclease III [Ruminococcus sp. SR1/5]
Length = 251
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 32/124 (25%), Gaps = 23/124 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K++ P + GD N I + + + F
Sbjct: 132 KLQEKKPVICCGDLNVAHQEIDLKNPKTNRKNAGFTDEERACFTRALESGFIDTFRYFYP 191
Query: 58 EKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+KE R ++ FL+ S Q S HCP+ +
Sbjct: 192 DKEGVYSWWSYRFRAREKNAGW--RIDYFLVSPSLKEKL--QDAKIHGEIMGSDHCPVEL 247
Query: 117 EYDF 120
+ D
Sbjct: 248 DIDL 251
>gi|269955565|ref|YP_003325354.1| exodeoxyribonuclease III Xth [Xylanimonas cellulosilytica DSM
15894]
gi|269304246|gb|ACZ29796.1| exodeoxyribonuclease III Xth [Xylanimonas cellulosilytica DSM
15894]
Length = 279
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 36/134 (26%), Gaps = 20/134 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDG 50
E + + P ++AGD N +++ + + D G
Sbjct: 146 EKVTARLAELGSGPTPTLVAGDLNIAHHNVDIANWKGNLKNAGFLPEERAYLDRWFDELG 205
Query: 51 LLIRFP----QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ R ++ ++ D + + + + T
Sbjct: 206 WTDLGRAHGGEGPGPYTWWSWRGQAYVNDKGWRIDYQLANPALAPRALKVEVDRAPTYEE 265
Query: 107 KLSTHCPLTIEYDF 120
+ S H PL YD
Sbjct: 266 RWSDHAPLIATYDL 279
>gi|168698628|ref|ZP_02730905.1| hypothetical protein GobsU_03844 [Gemmata obscuriglobus UQM 2246]
Length = 290
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 31/115 (26%), Gaps = 2/115 (1%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-QKMDPDGLLIRFPQEKESTCN 64
+ ++ + G V+ GDFN +S F + + ++ F
Sbjct: 176 AKLIRDRIGA-LGAGCSVVVTGDFNSGEDSEPYRTLFAARDKNESPVMDSFRAAHPKREP 234
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ V + +++ + S H P+T
Sbjct: 235 NEGTFTNFKAGPVKGDRIDWIGVSRDWTVTGAGIDRTEKDGRTPSDHFPVTATLS 289
>gi|254286781|ref|ZP_04961735.1| exodeoxyribonuclease III [Vibrio cholerae AM-19226]
gi|150423208|gb|EDN15155.1| exodeoxyribonuclease III [Vibrio cholerae AM-19226]
Length = 268
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 34/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q L + + V+ GD N +
Sbjct: 126 KRQFYRDLMTYLREHRSNSERLVVMGDINISPLDLDIGIGEANRKRWLQTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ Q + GL+ F Q R++ D + D + +
Sbjct: 186 EWLQTLLDWGLVDTFRQLHPDVSDQFSWFDYRSRGFEDNRGLRIDVILATPTLAETCQEA 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRAIDKPSDHAPIWATF 267
>gi|153825215|ref|ZP_01977882.1| exodeoxyribonuclease III [Vibrio cholerae MZO-2]
gi|153830542|ref|ZP_01983209.1| exodeoxyribonuclease III [Vibrio cholerae 623-39]
gi|229523879|ref|ZP_04413284.1| exodeoxyribonuclease III [Vibrio cholerae bv. albensis VL426]
gi|229529117|ref|ZP_04418507.1| exodeoxyribonuclease III [Vibrio cholerae 12129(1)]
gi|297579378|ref|ZP_06941306.1| exodeoxyribonuclease III [Vibrio cholerae RC385]
gi|148873972|gb|EDL72107.1| exodeoxyribonuclease III [Vibrio cholerae 623-39]
gi|149741194|gb|EDM55245.1| exodeoxyribonuclease III [Vibrio cholerae MZO-2]
gi|229332891|gb|EEN98377.1| exodeoxyribonuclease III [Vibrio cholerae 12129(1)]
gi|229337460|gb|EEO02477.1| exodeoxyribonuclease III [Vibrio cholerae bv. albensis VL426]
gi|297536972|gb|EFH75805.1| exodeoxyribonuclease III [Vibrio cholerae RC385]
gi|327484412|gb|AEA78819.1| Exodeoxyribonuclease III [Vibrio cholerae LMA3894-4]
Length = 268
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 34/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q L + + V+ GD N +
Sbjct: 126 KRQFYRDLMTYLREHRSNSERLVVMGDINISPLDLDIGIGEANRKRWLQTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ Q + GL+ F Q R++ D + D + +
Sbjct: 186 EWLQTLLDWGLVDTFRQLHPDVSDQFSWFDYRSRGFEDNRGLRIDVILATPTLAETCQEA 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRAIDKPSDHAPIWATF 267
>gi|153213065|ref|ZP_01948603.1| exodeoxyribonuclease III [Vibrio cholerae 1587]
gi|124116112|gb|EAY34932.1| exodeoxyribonuclease III [Vibrio cholerae 1587]
Length = 268
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 34/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q L + + V+ GD N +
Sbjct: 126 KRQFYRDLMTYLREHRSNSERLVVMGDINISPLDLDIGIGEANRKRWLQTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ Q + GL+ F Q R++ D + D + +
Sbjct: 186 EWLQTLLDWGLVDTFRQLHPDVSDQFSWFDYRSRGFEDNRGLRIDVILATPTLAETCQEA 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRAIDKPSDHAPIWATF 267
>gi|327462960|gb|EGF09281.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis SK1]
Length = 749
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 554 EQAKILNSFIQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDAA---DR 610
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 611 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 666
Query: 122 KG 123
K
Sbjct: 667 KD 668
>gi|324994996|gb|EGC26909.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis
SK678]
Length = 749
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 554 EQAKILNSFIQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDAA---DR 610
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 611 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 666
Query: 122 KG 123
K
Sbjct: 667 KD 668
>gi|324993691|gb|EGC25610.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis
SK405]
gi|325696321|gb|EGD38212.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis
SK160]
Length = 749
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 554 EQAKILNSFIQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDAA---DR 610
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 611 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 666
Query: 122 KG 123
K
Sbjct: 667 KD 668
>gi|315303668|ref|ZP_07874193.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627958|gb|EFR96566.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
Length = 251
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 34/132 (25%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P ++ GD N I + + +
Sbjct: 124 DAILAYVKK-LDETKPVILCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFTAFLEAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + +++ R + D ++V
Sbjct: 183 VDSFRYFYPDLEDAYSWWSYRMNARARNTGWRIDYFVVSERLKDNLVDAKIHPDVLG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ +E +
Sbjct: 240 -SDHCPVELELN 250
>gi|154148197|ref|YP_001407152.1| exodeoxyribonuclease III [Campylobacter hominis ATCC BAA-381]
gi|153804206|gb|ABS51213.1| exodeoxyribonuclease III [Campylobacter hominis ATCC BAA-381]
Length = 251
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 29/127 (22%), Gaps = 22/127 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLI 53
+ D+ K G +I GD N I +
Sbjct: 129 YLDKLKKQGRKIIICGDVNTAHREIDLKNPKSNSDRSGFLPIERAWIDKLLSHGFVDTFR 188
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+K + R + F I + K S HCP
Sbjct: 189 AINGDKIAYSWWSYRFNARAKNAGW--RIDYFFISEDLRENL--TNAFILDDIKGSDHCP 244
Query: 114 LTIEYDF 120
+ IE +
Sbjct: 245 VGIEINL 251
>gi|15604519|ref|NP_221037.1| exodeoxyribonuclease III (xthA2) [Rickettsia prowazekii str. Madrid
E]
gi|3861213|emb|CAA15113.1| EXODEOXYRIBONUCLEASE III (xthA2) [Rickettsia prowazekii]
gi|292572307|gb|ADE30222.1| Exodeoxyribonuclease III [Rickettsia prowazekii Rp22]
Length = 269
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 26/125 (20%), Gaps = 17/125 (13%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ-----------------KMDPDGLLI 53
+ K +I GDFN I + L
Sbjct: 133 NYLSTKKSCYEKTIIGGDFNIAPFDIDVYSKVLTETTCCTEVEQKKLRTILNSGFEDLYR 192
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+K+ R + D + + + K S H P
Sbjct: 193 LMHPDKQEFSWWDYRAGCFEQNKGMRIDMILGCNNTIDYLERCYMDYNLRTQKKPSDHIP 252
Query: 114 LTIEY 118
+ +
Sbjct: 253 IIASF 257
>gi|311745078|ref|ZP_07718863.1| exodeoxyribonuclease III [Algoriphagus sp. PR1]
gi|311302328|gb|EAZ81811.2| exodeoxyribonuclease III [Algoriphagus sp. PR1]
Length = 253
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 30/126 (23%), Gaps = 22/126 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLI 53
+ +T +++GD+N +I + K
Sbjct: 132 YIKDLRRTKPNLILSGDYNICHKAIDIHNPVSNKNSSGFLPEERVWMDKFTESGFIDTFR 191
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
F E R + D D + K S HCP
Sbjct: 192 HFNPEPHQYTWWSYRANARAKNLGWRIDYHMATKDMENRLKRSVILPEA----KHSDHCP 247
Query: 114 LTIEYD 119
+ +E +
Sbjct: 248 ILVELN 253
>gi|88601744|ref|YP_501922.1| exodeoxyribonuclease III (xth) [Methanospirillum hungatei JF-1]
gi|88187206|gb|ABD40203.1| exodeoxyribonuclease III (xth) [Methanospirillum hungatei JF-1]
Length = 264
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 27/133 (20%), Gaps = 22/133 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + G + GD N I ++
Sbjct: 136 DAFLEKIKTMDAAGERIIFCGDVNTAHKPIDLARPKENELVSGFLPIEREWIDRVIAAGF 195
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F E ++++ D I
Sbjct: 196 YDSFRLFSDEGNQYSWWDYKSRARTRNVGWRIDYFFVNTAAKPFITGAGI----RNDIMG 251
Query: 109 STHCPLTIEYDFE 121
S HCP+T+ +F
Sbjct: 252 SDHCPVTLTLEFP 264
>gi|325281386|ref|YP_004253928.1| exodeoxyribonuclease III Xth [Odoribacter splanchnicus DSM 20712]
gi|324313195|gb|ADY33748.1| exodeoxyribonuclease III Xth [Odoribacter splanchnicus DSM 20712]
Length = 257
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 36/140 (25%), Gaps = 27/140 (19%)
Query: 3 SQQG---EWL---KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q +WL + + + KT ++ GD+N I D
Sbjct: 118 ERQAFKMKWLEDFRHYVMKLSKTRKKLILCGDYNICHRPIDIHDPVRNANSSGFLPEERE 177
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
F E+ +++ ++ + +
Sbjct: 178 WMSLFLESGFTDTFRYFHPEEPH-QYTWWSFRANARNNNKGWRIDYCMVSPEVIPLL--K 234
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ K S HCP +E
Sbjct: 235 DAYILPQVKHSDHCPAVVEL 254
>gi|331014335|gb|EGH94391.1| exonuclease III [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 270
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 30/144 (20%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ E L+ + + P ++ GD N
Sbjct: 127 QRFYENLQALLEGQFSNEQPLIVMGDVNISPQDCDIGIGADNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVS 95
+ + E + R++ D + I +
Sbjct: 187 WMERLKNWGLVDSFRYLYPEVSDRFSWFDYRSRGFEDEPKRGLRIDLIMTSTGLQPRIKA 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 247 AGVDYDLRGMEKPSDHAPIWLELS 270
>gi|319940717|ref|ZP_08015059.1| exodeoxyribonuclease III [Sutterella wadsworthensis 3_1_45B]
gi|319805868|gb|EFW02635.1| exodeoxyribonuclease III [Sutterella wadsworthensis 3_1_45B]
Length = 263
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 37/136 (27%), Gaps = 23/136 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQ 44
+ + K D+ ++G +I GD N I + +
Sbjct: 125 RFLDAFKVHMDELRQSGREVIICGDINIAHKEIDLKNWKGNLDHSGFLPEERAWLDQRFG 184
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
K + E +R ++ + + ++ +
Sbjct: 185 KEGWVDVFRMLDPRPERYTWWSQRGQARAKNVGW--RIDYQITTPGIAALARNTGIFP-- 240
Query: 105 RSKLSTHCPLTIEYDF 120
K S H PL ++YD
Sbjct: 241 DEKFSDHAPLWVDYDL 256
>gi|325067220|ref|ZP_08125893.1| exodeoxyribonuclease III [Actinomyces oris K20]
Length = 163
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 33/133 (24%), Gaps = 17/133 (12%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKM 46
L + + W + + +P + GD+N D +
Sbjct: 33 LRVLRDDVAAWLEA--EPDLPLALVGDWNVAPRDEDVWDMSVFEGATHVSAPERQAFAAF 90
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
G+ + + + + D + + + +
Sbjct: 91 AEAGMREVTRERVTNYTYWDYQKLRFPRNEGMRIDFVYASPALAGRVTGAAIDRDERKGK 150
Query: 107 KLSTHCPLTIEYD 119
S H P+ +E D
Sbjct: 151 GASDHVPVMVELD 163
>gi|307308870|ref|ZP_07588558.1| exodeoxyribonuclease III Xth [Sinorhizobium meliloti BL225C]
gi|306900675|gb|EFN31287.1| exodeoxyribonuclease III Xth [Sinorhizobium meliloti BL225C]
Length = 257
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 18/128 (14%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGLLIR 54
+ A ++TG+P V+AGD+N ++ + G L
Sbjct: 129 NQHAAALLETGVPVVLAGDYNIVPEPRDIYPTRSYDDNALVQPESRAAFRSLVDQGWLDA 188
Query: 55 F---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+++ R + D+ + S H
Sbjct: 189 LRKIHPKEQLFTFWDYRRNRWQRDAGLRLDHILLSRKLRRRLTGAGIDREIRALEGSSDH 248
Query: 112 CPLTIEYD 119
P+ +
Sbjct: 249 APVWVSMR 256
>gi|330810622|ref|YP_004355084.1| exodeoxyribonuclease III [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327378730|gb|AEA70080.1| exodeoxyribonuclease III [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 270
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 13/138 (9%), Positives = 28/138 (20%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L++ + + P V+ GD N +
Sbjct: 133 LQQLLESRFSNDQPVVVMGDVNISPEDCDIGIGPDNMKRWLKTGKCSFLPEEREWMARLK 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
+ + R++ D L + +
Sbjct: 193 NWGLVDSFRHLNPDVTDRFSWFDYRSRGFEDEPKRGLRIDLILTSHGLLPRVKDAGVDYE 252
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ ++
Sbjct: 253 LRGMEKPSDHAPIWLQLS 270
>gi|120437855|ref|YP_863541.1| exodeoxyribonuclease [Gramella forsetii KT0803]
gi|117580005|emb|CAL68474.1| exodeoxyribonuclease [Gramella forsetii KT0803]
Length = 253
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 22/132 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
+ +++ DQ +I+GD+N +I D + +
Sbjct: 126 MDDFQRYIDQLKLEIPNLIISGDYNICHEAIDIHDPVRLKNVSGFLPEERKWIDGFMENG 185
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ ++ R + + D +
Sbjct: 186 FIDSFRHFNEDPDNYSWWSYRANARNNNKGWRIDYNLVSEPLKDRLRRAVILPEA----Y 241
Query: 108 LSTHCPLTIEYD 119
S HCP+ +E +
Sbjct: 242 HSDHCPVLVEIE 253
>gi|255262040|ref|ZP_05341382.1| exodeoxyribonuclease III [Thalassiobium sp. R2A62]
gi|255104375|gb|EET47049.1| exodeoxyribonuclease III [Thalassiobium sp. R2A62]
Length = 259
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E L A + +I GDFN + + + + ++
Sbjct: 127 MERLLTRAKDLLAEEQLALITGDFNIIPQAEDAANPQVWREDALFRPESRAAWRRIVNLG 186
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ ++ +FL+ + + R K
Sbjct: 187 YTEAFRARTHGPGHYSFWDYQAGAWNKNDGIRIDHFLLTPQCADLLRECKIDAEIRGREK 246
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 247 PSDHVPVWVEL 257
>gi|329767831|ref|ZP_08259347.1| hypothetical protein HMPREF0428_01044 [Gemella haemolysans M341]
gi|328838932|gb|EGF88526.1| hypothetical protein HMPREF0428_01044 [Gemella haemolysans M341]
Length = 748
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 9/124 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + + + + FV+ GDFN S ++ ++ +
Sbjct: 524 EEAKILNAFIKEGLRQNPNLKFVLTGDFNDFEFSDSVKTIVGNELVNLMAE---HEQGDR 580
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD +I ++ K+ ++ + I + + S H P+ ++ DF
Sbjct: 581 YSYFYRGSNQSLDNILISKNIKDKVVFSPVHI----NASFMEEHGRASDHDPVVVQIDFS 636
Query: 122 KGNV 125
K V
Sbjct: 637 KKEV 640
>gi|163740897|ref|ZP_02148290.1| endonuclease/exonuclease/phosphatase family protein [Phaeobacter
gallaeciensis 2.10]
gi|161385888|gb|EDQ10264.1| endonuclease/exonuclease/phosphatase family protein [Phaeobacter
gallaeciensis 2.10]
Length = 339
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 22/138 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKIN-----------------SIGDTDDFWQKMD 47
Q WL++ +Q + G ++ GD N D Q +
Sbjct: 201 QAIWLRRRVEQLLAEGRDVMVMGDLNDGPGLDQYEQLFNRSSVEIVMESDLYDPNAQSLL 260
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSYDQSDLD 102
L + + + + LDY ++ + Y+ L
Sbjct: 261 QPRLRVMPSSARFYDKANKRYFSALLDYIMVSSGLRQPAASWRIWHPFEDAACYEDVALR 320
Query: 103 TRRSKLSTHCPLTIEYDF 120
S H P++++ D
Sbjct: 321 EALLAASDHFPVSLDLDL 338
>gi|118580060|ref|YP_901310.1| exonuclease III [Pelobacter propionicus DSM 2379]
gi|118502770|gb|ABK99252.1| Exodeoxyribonuclease III [Pelobacter propionicus DSM 2379]
Length = 270
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/144 (11%), Positives = 32/144 (22%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ L + P V+ GDFN +
Sbjct: 127 QRFYAELLGHLQGECDPATPLVVLGDFNVAPRDMDLGIGTDNVKRWLKSGKCCFLPEERL 186
Query: 39 TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVS 95
+ + + R++ + L+ S +
Sbjct: 187 WFECLIEWGLHDSFRELNPAVADRFSWFDYRSRGFEGEPKRGLRIDHILLTRSLLARCRA 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
+K S HCP+ +E +
Sbjct: 247 AGIDYDIRSMAKPSDHCPVWVEIE 270
>gi|260495692|ref|ZP_05815815.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
gi|260196757|gb|EEW94281.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
Length = 253
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 36/135 (26%), Gaps = 24/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ +K+ ++ P V GD N I + + +
Sbjct: 124 DEFRKYLK-NLEKKKPVVACGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKFTELLDSGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ R ++ + D ++V +
Sbjct: 183 IDTFRYFYPNLEQVYSWWSYRGRARENNAGWRIDYFVVSKGLEKNLVDAEIHTQIEG--- 239
Query: 108 LSTHCPLTIEYDFEK 122
S HCP+ + + +K
Sbjct: 240 -SDHCPVVLFLNLDK 253
>gi|109639337|gb|ABG36534.1| exodeoxyribonuclease III [Haemophilus ducreyi]
Length = 267
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 31/135 (22%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------------DDFW 43
L+ + + + P +I GD N + + +
Sbjct: 132 LQHYLETTLTADNPIIIMGDMNICSTDLDIGIGEANRKRWLREGKCSFLPEEREWLNRLY 191
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
D P + R+K D + D + V
Sbjct: 192 HYGLVDTFRAMHPTTTDQFSWFDYRSKGFNDNRGLRIDLILASTTLANHCVETGIDLEIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 252 AMEKPSDHAPIWAVF 266
>gi|77360282|ref|YP_339857.1| exonuclease III [Pseudoalteromonas haloplanktis TAC125]
gi|76875193|emb|CAI86414.1| exonuclease III [Pseudoalteromonas haloplanktis TAC125]
Length = 268
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 34/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------T 39
+Q + L ++ GD N ++
Sbjct: 126 KRQFYKDLMTHLQTNHTPDEDVIVMGDINISPTNLDIGIGEVNAKRWLKTGKCSFQPIER 185
Query: 40 DDFWQKMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ ++ Q E+ R+K LD + D + + +
Sbjct: 186 EWLATLLNWGFKDTFREQNPETSDQYSWFDYRSKGFLDNRGLRIDVVLATHELAARCIDT 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 246 GIDYELRGIEKPSDHAPIWSEF 267
>gi|86135128|ref|ZP_01053710.1| exodeoxyribonuclease III (Xth) [Polaribacter sp. MED152]
gi|85821991|gb|EAQ43138.1| exodeoxyribonuclease III (Xth) [Polaribacter sp. MED152]
Length = 253
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 34/131 (25%), Gaps = 21/131 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM-----------------DP 48
+ +++ K VI GD+N I + + +
Sbjct: 126 MDEFQEYITNLRKEIPNLVICGDYNICHEEIDIHNPKMKGVSGFLPEERTWIGNFINSGF 185
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+E + R + + ++ L +K
Sbjct: 186 IDSFRYLNKELQQYSWWSYRANARANNKGW--RLDYAMVSEPLKDKISRAYILP--EAKH 241
Query: 109 STHCPLTIEYD 119
S HCP+ +E D
Sbjct: 242 SDHCPIALELD 252
>gi|319442381|ref|ZP_07991537.1| exodeoxyribonuclease III [Corynebacterium variabile DSM 44702]
Length = 259
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 32/125 (25%), Gaps = 18/125 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW---------------QKMDPDGL 51
+ L +A+Q+ P V+ GDFN D + + ++ GL
Sbjct: 131 DALASYAEQE---HRPTVVTGDFNITPTDDDVWDPSFFVGKTHVTPRERDALRHLEDAGL 187
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ I D + + R S H
Sbjct: 188 TEATATLHGRYSYWDYQAMRFQRGQGIRIDLQYCRGITPADDPEPWVDVDERRGKGASDH 247
Query: 112 CPLTI 116
P+ +
Sbjct: 248 APVIV 252
>gi|194292799|ref|YP_002008706.1| exodeoxyribonuclease iii, ap endonuclease, family 1 [Cupriavidus
taiwanensis LMG 19424]
gi|193226703|emb|CAQ72654.1| Exodeoxyribonuclease III, AP endonuclease, family 1 [Cupriavidus
taiwanensis LMG 19424]
Length = 270
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 29/130 (22%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDG 50
E L A + +G P V+AGD+N + + + +
Sbjct: 131 ERLIAHAQELFGSGHPVVLAGDYNVVPTDQDIYNPRSWRKDALLQPESRDAYARLLAQGW 190
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKL 108
+ ++ + L+ +
Sbjct: 191 TDALRQRHPDAPVYTFWDYFRQHWQTNSGLRIDHILLSAELAPRLRDAGVDRWVRGEDHP 250
Query: 109 STHCPLTIEY 118
S H P +
Sbjct: 251 SDHAPAWVVL 260
>gi|300726843|ref|ZP_07060273.1| exodeoxyribonuclease III [Prevotella bryantii B14]
gi|299775956|gb|EFI72536.1| exodeoxyribonuclease III [Prevotella bryantii B14]
Length = 250
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 26/123 (21%), Gaps = 22/123 (17%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ P ++ GD N I +
Sbjct: 132 KLDKRKPIIVCGDMNVAHQEIDIKNPKTNHKSAGFTDEEREKMTQLLSNGFTDTFRFKYP 191
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E+ + R ++ D ++ S HCP+ +
Sbjct: 192 EQITYSWWSYRFRAREKNAGWRIDYFLVSDRIKEKVLDAKIHTDIMG----SDHCPVELT 247
Query: 118 YDF 120
+
Sbjct: 248 IEL 250
>gi|255655350|ref|ZP_05400759.1| putative exodeoxyribonuclease [Clostridium difficile QCD-23m63]
gi|296451338|ref|ZP_06893076.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
gi|296259754|gb|EFH06611.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
Length = 250
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 33/133 (24%), Gaps = 25/133 (18%)
Query: 7 EWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------------- 49
W + D K+ P ++ GD N I + +
Sbjct: 121 RWEDDFIDYLTKLDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKFSKLLDS 180
Query: 50 ---GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
F +KE R + + D ++S D
Sbjct: 181 GFIDTYRYFNPDKEGVYSWWSYRFNARKNNAGWRIDYFCASKKLEDRLISADIHTEVLG- 239
Query: 106 SKLSTHCPLTIEY 118
S HCP+ +E
Sbjct: 240 ---SDHCPVELEI 249
>gi|150005146|ref|YP_001299890.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|254883281|ref|ZP_05255991.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|294778957|ref|ZP_06744373.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|319642656|ref|ZP_07997302.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
gi|149933570|gb|ABR40268.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|254836074|gb|EET16383.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|294447266|gb|EFG15850.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|317385744|gb|EFV66677.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
Length = 252
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 31/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + + ++ P ++ GD N I + + +
Sbjct: 128 RAYLKK-LEEKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKFTTLLESGFTDT 186
Query: 52 LIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F E+E R K+ D + S
Sbjct: 187 FRYFYPEQEGIYSWWSYRFKAREKNSGWRIDYFLTSDSLKDRLKGAHIYTDIFG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +
Sbjct: 243 HCPVELTIEL 252
>gi|170717538|ref|YP_001784627.1| exonuclease III [Haemophilus somnus 2336]
gi|168825667|gb|ACA31038.1| exodeoxyribonuclease III [Haemophilus somnus 2336]
Length = 267
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 34/135 (25%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQKM 46
L+ + +Q+ P +I GD N + + +
Sbjct: 132 LQHYVEQEHDRNNPILIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWINRLY 191
Query: 47 DPDGLLIRFPQEKE---STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + + R+K D + D+ V +
Sbjct: 192 NYGLIDTFRHKNPTINDQFSWFDYRSKGFDDNRGLRIDHILVNQLLLERCVDAGIAFDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEF 266
>gi|282858966|ref|ZP_06268104.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|282588246|gb|EFB93413.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
Length = 249
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 24/121 (19%), Gaps = 22/121 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDGLLIRFPQ 57
K+ P ++ GD N I +
Sbjct: 132 KLDEHKPVIVCGDMNVAHEEIDLKNPKTNHHNAGFSDEEREKMTILLNNGFTDTFRYLYP 191
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E+ + R K+ D + S HCP+ +
Sbjct: 192 EQVTYSWWSYRFKAREKNTGWRIDYFLISNRLRDRLKDAKIHTEIFG----SDHCPVELT 247
Query: 118 Y 118
Sbjct: 248 L 248
>gi|229089031|ref|ZP_04220388.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-44]
gi|228694283|gb|EEL47902.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-44]
Length = 353
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G V+ GD+N+ ++ + D +++ P+ L+ +
Sbjct: 227 IRKQQVEFLKEYMNKHYKNGDYIVLGGDWNQLLSDVQLQDPKFKEEWPEWLVQLPEDFTD 286
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
KS ++ FL+ + IVS DL S H
Sbjct: 287 GGFQWAVDDSVWTVRDNVKSYVEGENFVTIIDGFLVSPNVEIVSVQGHDLKFEN---SDH 343
Query: 112 CPLTIEYDFE 121
P++ +
Sbjct: 344 NPVSTVLKLK 353
>gi|329902691|ref|ZP_08273242.1| hypothetical protein IMCC9480_801 [Oxalobacteraceae bacterium
IMCC9480]
gi|327548636|gb|EGF33289.1| hypothetical protein IMCC9480_801 [Oxalobacteraceae bacterium
IMCC9480]
Length = 562
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 38/132 (28%), Gaps = 18/132 (13%)
Query: 4 QQGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L KW Q + ++ GDFN ++ + L++ +
Sbjct: 163 RQASALNKWVGQLVANSGEADVLMVGDFNAYLHEDPIKTIEAAGFED---LLKRLPASDR 219
Query: 62 TCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD-----QSDLDTRRSKL 108
V +LD+ + + + + Y+ +
Sbjct: 220 YTYVFNGESGALDHGLASSKLSAQVTGVTVWHINADEPIALDYNTEFKTDDRYAVTPYRS 279
Query: 109 STHCPLTIEYDF 120
S H P+ + +
Sbjct: 280 SDHDPVLVGLNL 291
>gi|327313318|ref|YP_004328755.1| exodeoxyribonuclease III [Prevotella denticola F0289]
gi|326944960|gb|AEA20845.1| exodeoxyribonuclease III [Prevotella denticola F0289]
Length = 249
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 27/121 (22%), Gaps = 22/121 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ P V+ GD N I + + +
Sbjct: 132 KLDEKKPVVVCGDMNVAHQEIDLKNPKTNRKNAGFTDEEREKMTQLLGNGFIDTFRTLYP 191
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E+ + R ++ D + S HCP+ ++
Sbjct: 192 EQVTYSWWSYRFRARERNTGWRIDYFLISERLRDRLEDAKIHTEIMG----SDHCPVEVD 247
Query: 118 Y 118
Sbjct: 248 L 248
>gi|315186595|gb|EFU20354.1| exodeoxyribonuclease III Xth [Spirochaeta thermophila DSM 6578]
Length = 256
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 37/132 (28%), Gaps = 22/132 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+K+ AD + G +I+GDFN + + +P
Sbjct: 126 CNAVKERADAYVAAGRHVLISGDFNIAHTPLDLARPEANEKNPGYLPEEREWMTYFLSSG 185
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +E R K+ ++ F + + +
Sbjct: 186 YVDTFRMFTKEGGHYTWWTYRFKAREKDIGW--RIDYHCVNEGFKDK--VKESVILKNVM 241
Query: 108 LSTHCPLTIEYD 119
S HCP+ I D
Sbjct: 242 GSDHCPVKITLD 253
>gi|221369426|ref|YP_002520522.1| Exodeoxyribonuclease III [Rhodobacter sphaeroides KD131]
gi|221162478|gb|ACM03449.1| Exodeoxyribonuclease III [Rhodobacter sphaeroides KD131]
Length = 255
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 31/128 (24%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLL 52
L A++ ++ +P V+AGDFN + F + +
Sbjct: 127 LLNHAEELLRHDVPVVLAGDFNVMPTDLDVHRPERWREDALFRPEARAAFARLLTQGWTD 186
Query: 53 --IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
E + + D+ + K S
Sbjct: 187 AVRHLHPEDRIYTFWDYLRNAWERDAGLRLDHLLLSPSLLPRLKKAGVDRHVRGWEKASD 246
Query: 111 HCPLTIEY 118
H P IE
Sbjct: 247 HAPAWIEI 254
>gi|149918584|ref|ZP_01907073.1| exodeoxyribonuclease III [Plesiocystis pacifica SIR-1]
gi|149820660|gb|EDM80072.1| exodeoxyribonuclease III [Plesiocystis pacifica SIR-1]
Length = 262
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 26/129 (20%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
L+ D + V+ GDFN ++ +
Sbjct: 131 RLRGELDARFGPSDEVVLCGDFNIARDARDTWSVESMKGGTHFTPEEHAALDALENFGLH 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+F R S + D + + S
Sbjct: 191 DCFRKFDDAPGRFTWFDYRGGSWEKKHGLRIDYVYATAPATERCTEVVHDWEPRAWDEPS 250
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 251 DHVPVVARF 259
>gi|160875927|ref|YP_001555243.1| exonuclease III [Shewanella baltica OS195]
gi|160861449|gb|ABX49983.1| exodeoxyribonuclease III [Shewanella baltica OS195]
gi|315268120|gb|ADT94973.1| exodeoxyribonuclease III [Shewanella baltica OS678]
Length = 270
Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 29/137 (21%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L + I GD N +
Sbjct: 131 QDLMHYLQTNHSNDEDIAIIGDINISPTDLDIGIGEVNRKRWLKTGKCSFQPEEREWLKT 190
Query: 43 WQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q + E+ E R+K D + D + +V D
Sbjct: 191 LQDWGLVDTFRQLHPERIERYSWFDYRSKGFDDNRGLRIDVILATPSLAARLVESDVDYD 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 251 LRGIDKPSDHAPIWSTF 267
>gi|167034007|ref|YP_001669238.1| exodeoxyribonuclease III Xth [Pseudomonas putida GB-1]
gi|166860495|gb|ABY98902.1| exodeoxyribonuclease III Xth [Pseudomonas putida GB-1]
Length = 265
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 33/128 (25%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLL- 52
L K A + P V+AGDFN + ++ + G +
Sbjct: 131 LIKHAQTLHVSRHPTVLAGDFNVVPTDLDIYSPRSWLKDALLQPESRACFEALLAQGWVD 190
Query: 53 --IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
E+ + D+ S + +K S
Sbjct: 191 AVRHLYPEQRIYTFWDYFRNHWARNAGLRIDHLLLNPGLSPYLKGAGVDAWVRNEAKASD 250
Query: 111 HCPLTIEY 118
H P+ I+
Sbjct: 251 HAPVWIQL 258
>gi|332296037|ref|YP_004437960.1| exodeoxyribonuclease III Xth [Thermodesulfobium narugense DSM
14796]
gi|332179140|gb|AEE14829.1| exodeoxyribonuclease III Xth [Thermodesulfobium narugense DSM
14796]
Length = 254
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 30/132 (22%), Gaps = 20/132 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPD---G 50
L + + P ++ GDFN + D +++
Sbjct: 123 LLAFLKENFTPNDPIIMLGDFNVALTDFDVYDPQILKDTIGTMPEERKALRELLNYGFID 182
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDTRRSKL 108
+ D + + + R K
Sbjct: 183 TYRHLHPNDPGFTWFNYIGGDIWKNKGMRIDYILVTKPLINKVKNVEVDLSLRKRRTPKP 242
Query: 109 STHCPLTIEYDF 120
S H PL +E +F
Sbjct: 243 SDHAPLVMEINF 254
>gi|313114917|ref|ZP_07800415.1| exodeoxyribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
gi|310622794|gb|EFQ06251.1| exodeoxyribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
Length = 250
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 32/132 (24%), Gaps = 23/132 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + P ++ GD N I +D M
Sbjct: 124 DAFRAYLLA-LDAKKPVILCGDLNVAHREIDIKNDKTNHMSAGFTDQERGKMTELLDAGF 182
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + D + I + + +
Sbjct: 183 ADSFRVLHPDEVKYSWWSYRFHAREKNAGWRIDYFIVSRRIADKIRAAEIHNEIFG---- 238
Query: 109 STHCPLTIEYDF 120
S HCP+ ++ D
Sbjct: 239 SDHCPVELDIDL 250
>gi|213967028|ref|ZP_03395178.1| exodeoxyribonuclease III [Pseudomonas syringae pv. tomato T1]
gi|301385213|ref|ZP_07233631.1| exonuclease III [Pseudomonas syringae pv. tomato Max13]
gi|302059606|ref|ZP_07251147.1| exonuclease III [Pseudomonas syringae pv. tomato K40]
gi|302130154|ref|ZP_07256144.1| exonuclease III [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|213928350|gb|EEB61895.1| exodeoxyribonuclease III [Pseudomonas syringae pv. tomato T1]
Length = 270
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 30/144 (20%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ E L+ + + P ++ GD N
Sbjct: 127 QRFYENLQALLEGQFSNEQPLIVMGDVNISPQDCDIGIGADNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVS 95
+ + E + R++ D + I +
Sbjct: 187 WMERLKNWGLVDSFRYLYPEVSDRFSWFDYRSRGFEDEPKRGLRIDLIMTSTGLQPRIKA 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 247 AGVDYDLRGMEKPSDHAPIWLELS 270
>gi|163796419|ref|ZP_02190379.1| Exonuclease III [alpha proteobacterium BAL199]
gi|159178269|gb|EDP62813.1| Exonuclease III [alpha proteobacterium BAL199]
Length = 264
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 29/133 (21%), Gaps = 21/133 (15%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPDG 50
+ W + P ++ GD N +
Sbjct: 132 RAWFTAERTREQPMILVGDLNIAPLQTDVWSHKQLLGVVSHTPVEVEALGALQADLGWVD 191
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKL 108
+ + ++S D R + + + + K
Sbjct: 192 AVRQRIPPEQSLYTWWSYRARDWDESNRGRRLDHVWVTPPLAGTVRAASVLREARGWEKA 251
Query: 109 STHCPLTIEYDFE 121
S H P+ ++ D
Sbjct: 252 SDHVPVIVDLDLS 264
>gi|330834656|ref|YP_004409384.1| exodeoxyribonuclease III Xth [Metallosphaera cuprina Ar-4]
gi|329566795|gb|AEB94900.1| exodeoxyribonuclease III Xth [Metallosphaera cuprina Ar-4]
Length = 256
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 29/131 (22%), Gaps = 25/131 (19%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+++ G P VI GDFN I
Sbjct: 132 RAFQEYVASL---GKPSVICGDFNVAHEEIDIARPKDNVNHAGFTPEERKWFHEFLLSGF 188
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F +E R + D + + + +
Sbjct: 189 VDTFRLFVKEPGHYSWWSYRFHAREKNIGWRIDYCVVSKELESKVKKAEI----LEKVMG 244
Query: 109 STHCPLTIEYD 119
S H P+T+E
Sbjct: 245 SDHAPVTVEIS 255
>gi|198276716|ref|ZP_03209247.1| hypothetical protein BACPLE_02915 [Bacteroides plebeius DSM 17135]
gi|198270241|gb|EDY94511.1| hypothetical protein BACPLE_02915 [Bacteroides plebeius DSM 17135]
Length = 252
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 33/129 (25%), Gaps = 24/129 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + QK+ P ++ GD N I + +M+
Sbjct: 128 RAYL-QKLDQSKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQLLLDAGFIDT 186
Query: 52 LIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F E+ + R K+ D + + S
Sbjct: 187 FRYFYPEQTNIYSWWSYRFKAREKNAGWRIDYFLASASLADKLKEAKIHTEIFG----SD 242
Query: 111 HCPLTIEYD 119
HCP+ + +
Sbjct: 243 HCPVEVTVE 251
>gi|226361308|ref|YP_002779086.1| exodeoxyribonuclease III [Rhodococcus opacus B4]
gi|226239793|dbj|BAH50141.1| putative exodeoxyribonuclease III [Rhodococcus opacus B4]
Length = 267
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 12/125 (9%), Positives = 25/125 (20%), Gaps = 20/125 (16%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFP 56
W D+ + GD+N D +Q G
Sbjct: 143 WLDRN--PDAQIALVGDWNVAPTDEDVWDPALFEGKTHTSVPEREAFQAFVESGFADVVR 200
Query: 57 QEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ D + + + + + S H P
Sbjct: 201 PHTPGPGVYTYWDYTQLRFPKKQGMRIDFVLGSPALAGRVDKAEIDRNERKGKGASDHAP 260
Query: 114 LTIEY 118
+ ++
Sbjct: 261 VIVDL 265
>gi|58584986|ref|YP_198559.1| exonuclease III [Wolbachia endosymbiont strain TRS of Brugia
malayi]
gi|58419302|gb|AAW71317.1| Exonuclease III [Wolbachia endosymbiont strain TRS of Brugia
malayi]
Length = 260
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 30/125 (24%), Gaps = 18/125 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDG 50
L + D +K VIAGD+N + I D +
Sbjct: 131 LYERMDNLLKNEELIVIAGDYNVAPDEIDVFDPTLLNGQVCFHIKEREKLKAILNLGFKD 190
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + S + + D+ + D + S
Sbjct: 191 AFRMSHPNLQQFSWWRYQGNSLRNNQGMRIDHMLLSPQAVDKLGICYIDDRLRKLENPSD 250
Query: 111 HCPLT 115
H P+
Sbjct: 251 HTPIV 255
>gi|332993545|gb|AEF03600.1| exodeoxyribonuclease III [Alteromonas sp. SN2]
Length = 269
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 27/138 (19%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------------DD 41
+ L + D ++ GD N + +
Sbjct: 131 KDLMTYLDTHHTPDENVIVMGDVNISHTDLDIGIGEENKKRWLRTGKCSFLPEERVWLNT 190
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
D P + R+K D + D +
Sbjct: 191 LMDWGFEDSFRTLNPDTTDRYSWFDYRSKGFNDNRGLRIDLILATPSMHKRLSDAGIDYE 250
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ Y
Sbjct: 251 LRGIEKPSDHAPIWATYS 268
>gi|291165919|gb|EFE27966.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
Length = 251
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 23/124 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
++ P ++ GD N I + + + F
Sbjct: 132 RLNETKPVIVCGDLNVAHQEIDLKNPKTNQKNAGFTIEERTKMSTLLDSGFIDTFRFFYP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
E + + R + + D + ++ S HCP+ +
Sbjct: 192 ELEGAYSWWSYRFNARKNNAGWRIDYFLTSQELKENLKDAKIHSDILG----SDHCPVEL 247
Query: 117 EYDF 120
+ ++
Sbjct: 248 DIEW 251
>gi|90412875|ref|ZP_01220875.1| putative exodeoxyribonuclease III [Photobacterium profundum 3TCK]
gi|90326234|gb|EAS42661.1| putative exodeoxyribonuclease III [Photobacterium profundum 3TCK]
Length = 268
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 12/135 (8%), Positives = 27/135 (20%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L + + ++ GD N +
Sbjct: 133 LMNYLNTHHTNEEEVIVMGDINISPIDLDIGIGPANAKRWLKTGKCSFQLIEREWLKTLM 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + + R+K +D + D + +
Sbjct: 193 DWGFTDTFRQLHPDVDDQFSWFDYRSKGFVDNRGLRIDVVLATPSLAARCIDAGIDYELR 252
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 253 GIEKPSDHAPIWSTF 267
>gi|149200232|ref|ZP_01877254.1| exodeoxyribonuclease (ExoA) [Lentisphaera araneosa HTCC2155]
gi|149136674|gb|EDM25105.1| exodeoxyribonuclease (ExoA) [Lentisphaera araneosa HTCC2155]
Length = 258
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 37/135 (27%), Gaps = 23/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ L + +K V+ GDFN +I + + +P
Sbjct: 129 DALIEQLKEKYS-DKACVLCGDFNVAHKAIDLKNPKANEKNPGYSIQERNWMDKFLAAGH 187
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F Q + R + F + S +
Sbjct: 188 VDTFRMFNQNPDEYSWWSYRGGARSRNVGW--RIDYFCVSESAR--DRVLDAGIMQEVLG 243
Query: 109 STHCPLTIEYDFEKG 123
S HCP++IE + +G
Sbjct: 244 SDHCPVSIELESSQG 258
>gi|16127936|ref|NP_422500.1| exodeoxyribonuclease III [Caulobacter crescentus CB15]
gi|221236757|ref|YP_002519194.1| exodeoxyribonuclease III [Caulobacter crescentus NA1000]
gi|13425472|gb|AAK25668.1| exodeoxyribonuclease III [Caulobacter crescentus CB15]
gi|220965930|gb|ACL97286.1| exodeoxyribonuclease III [Caulobacter crescentus NA1000]
Length = 268
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 29/130 (22%), Gaps = 26/130 (20%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDT-------------------DDFWQKMDPDGLLIRF 55
+K P ++ GD N D + MD L
Sbjct: 137 KKRDPKAPLIVTGDLNIAPGENDVWSHRQMLKVVSHTPPELEAFDALIKSMDLLDLPRLA 196
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI-------VSYDQSDLDTRRSKL 108
E + + + + L VS D +
Sbjct: 197 TPEPQKLFSWWSYRAADFRKSNRGLRLDHILASPGLRDAASLDGKVSSRVHDDVREWERP 256
Query: 109 STHCPLTIEY 118
S H P+T +
Sbjct: 257 SDHAPVTADL 266
>gi|331092367|ref|ZP_08341193.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
gi|330401391|gb|EGG80977.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
Length = 250
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 14/134 (10%), Positives = 31/134 (23%), Gaps = 25/134 (18%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+W + +K++ P + GD N I + + +
Sbjct: 120 MQWETDFLAYMKKLEEKKPVIFCGDLNVAHREIDLKNPKTNRKNAGFTDEERGKFGELLD 179
Query: 50 ----GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
F + + R ++ D +
Sbjct: 180 AGFIDTFRYFYPDMEGIYSWWSYRFRAREKNAGWRIDYFCVSESLRERLADAKILTYIFG 239
Query: 105 RSKLSTHCPLTIEY 118
S HCP+ ++
Sbjct: 240 ----SDHCPVELDL 249
>gi|229493724|ref|ZP_04387508.1| exodeoxyribonuclease III [Rhodococcus erythropolis SK121]
gi|229319393|gb|EEN85230.1| exodeoxyribonuclease III [Rhodococcus erythropolis SK121]
Length = 266
Score = 64.9 bits (156), Expect = 3e-09, Method: Composition-based stats.
Identities = 11/135 (8%), Positives = 31/135 (22%), Gaps = 20/135 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------ 43
L++ + + W Q + GD+N D +
Sbjct: 133 LAKLRDDAEGWLKQ--DPDAQIALVGDWNVAPTDDDVWDPAFFEGKTHTSEPERAAFTAF 190
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ ++ + + D + + + + +
Sbjct: 191 TESGFADVVRPYTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPAFAARVEAAEIDRNER 250
Query: 104 RRSKLSTHCPLTIEY 118
+ S H P+ +
Sbjct: 251 KGKGASDHAPVIVNL 265
>gi|298487202|ref|ZP_07005251.1| Exodeoxyribonuclease III [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|298158226|gb|EFH99297.1| Exodeoxyribonuclease III [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
Length = 270
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 30/144 (20%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ E L+ + P ++ GD N
Sbjct: 127 QRFYENLQTLLESHFSNEQPLIVMGDVNISPQDCDIGIGADNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVS 95
+ + E + R++ D + I +
Sbjct: 187 WMERLKNWGLVDSFRHLYPEVVDRFSWFDYRSRGFEDEPKRGLRIDLIMTSTGLQPRIKA 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +E +
Sbjct: 247 AGVDYDLRGMEKPSDHAPIWLELN 270
>gi|311070625|ref|YP_003975548.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|310871142|gb|ADP34617.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
Length = 252
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 28/133 (21%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + P V+ GD N I + + +
Sbjct: 125 DAFLSYIKA-LDVKKPVVLCGDLNVAHQEIDLKNPKANRKNAGFSDQERERFSQMLEEGF 183
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + R + F++
Sbjct: 184 IDTFRYLHPDQEGAYSWWSYRMNARAKNVGW--RLDYFIVSERLKKQIRGAKIC--NEVM 239
Query: 108 LSTHCPLTIEYDF 120
S HCP+ + D
Sbjct: 240 GSDHCPVELTIDL 252
>gi|307320300|ref|ZP_07599718.1| exodeoxyribonuclease III Xth [Sinorhizobium meliloti AK83]
gi|306894022|gb|EFN24790.1| exodeoxyribonuclease III Xth [Sinorhizobium meliloti AK83]
Length = 257
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 18/128 (14%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGLLIR 54
+ A ++TG+P V+AGD+N ++ + G L
Sbjct: 129 NQHAAALLETGVPVVLAGDYNVVPEPRDIYPTRSYDDNALVQPESRAAFRSLVDQGWLDA 188
Query: 55 F---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+++ R + D+ + S H
Sbjct: 189 LRKIHPKEQLFTFWDYRRNRWQRDAGLRLDHILLSRKLRRRLTGAGIDREIRALEGSSDH 248
Query: 112 CPLTIEYD 119
P+ +
Sbjct: 249 APVWVSMR 256
>gi|227547870|ref|ZP_03977919.1| possible exodeoxyribonuclease III [Corynebacterium lipophiloflavum
DSM 44291]
gi|227080055|gb|EEI18018.1| possible exodeoxyribonuclease III [Corynebacterium lipophiloflavum
DSM 44291]
Length = 259
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 29/120 (24%), Gaps = 13/120 (10%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-------------QKMDPDGLLIRFPQEK 59
++ P + GDFN D W + +
Sbjct: 130 LQHEVAAQTPQLFTGDFNIAPRDSSVWDIAWFEGKTHVTEPERAAFEMLLEAGLVEIRHD 189
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ + + D + +V + R S H P+ ++D
Sbjct: 190 DAYSFWDYKAMRFQKNQGMLIDFLLATPPLAGKLVKAWVDVDERRGKGASDHAPVIADFD 249
>gi|225420139|ref|ZP_03762442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme
DSM 15981]
gi|225041196|gb|EEG51442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme
DSM 15981]
Length = 251
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 34/135 (25%), Gaps = 25/135 (18%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
EW + +K++ P + GD N I + + +
Sbjct: 121 MEWENAFLAYLKKLEEEKPVIFCGDLNVAHKEIDLKNPKSNRKNAGFTDEERGKFTDLLG 180
Query: 50 ----GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
F ++E R + D +VS D
Sbjct: 181 AGFIDTFRYFYPDREGIYSWWSYRFSARAKNAGWRIDYFCASESLKDRLVSADIHTEVMG 240
Query: 105 RSKLSTHCPLTIEYD 119
S HCP+ + +
Sbjct: 241 ----SDHCPVELVIE 251
>gi|113460979|ref|YP_719046.1| exonuclease III [Haemophilus somnus 129PT]
gi|112823022|gb|ABI25111.1| Exodeoxyribonuclease III [Haemophilus somnus 129PT]
Length = 267
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 34/135 (25%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQKM 46
L+ + +Q+ P +I GD N + + +
Sbjct: 132 LQHYVEQEHDRNNPILIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWINRLY 191
Query: 47 DPDGLLIRFPQEKE---STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + + R+K D + D+ V +
Sbjct: 192 NYGLIDTFRHKNPTINDQFSWFDYRSKGFDDNRGLRIDHILVNQLLLERCVDAGIAFDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 252 AMEKPSDHAPIWAEF 266
>gi|111019171|ref|YP_702143.1| DNA-(apurinic or apyrimidinic site) lyase [Rhodococcus jostii RHA1]
gi|110818701|gb|ABG93985.1| probable DNA-(apurinic or apyrimidinic site) lyase [Rhodococcus
jostii RHA1]
Length = 270
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 12/125 (9%), Positives = 24/125 (19%), Gaps = 20/125 (16%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFP 56
W Q + GD+N D +Q G
Sbjct: 146 WLGQN--PDAQIALVGDWNVAPTDEDVWDPALFEGKTHTSAPEREAFQAFVESGFADVVR 203
Query: 57 QEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ D + + + + + S H P
Sbjct: 204 PHTPGPGVYTYWDYTQLRFPKKQGMRIDFVLGSPALAGRVDKAEIDRNERKGKGASDHAP 263
Query: 114 LTIEY 118
+ ++
Sbjct: 264 VIVDL 268
>gi|326772453|ref|ZP_08231737.1| exodeoxyribonuclease III [Actinomyces viscosus C505]
gi|326637085|gb|EGE37987.1| exodeoxyribonuclease III [Actinomyces viscosus C505]
Length = 269
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 32/131 (24%), Gaps = 17/131 (12%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKM 46
L + + W + +P + GD+N D + +
Sbjct: 139 LRVLRDDVAAWLEA--DPDLPLALVGDWNVAPRDEDVWDMSAFEGATHVSEPEREAFAAF 196
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
G+ + + + + D + + + +
Sbjct: 197 AEVGMREVTRERVTNYTYWDYQKLRFPRNEGMRIDFVYASPALAGRVTDAAIDRDERKGK 256
Query: 107 KLSTHCPLTIE 117
S H P+ +E
Sbjct: 257 GASDHVPVIVE 267
>gi|170721574|ref|YP_001749262.1| exonuclease III [Pseudomonas putida W619]
gi|169759577|gb|ACA72893.1| exodeoxyribonuclease III [Pseudomonas putida W619]
Length = 270
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 29/138 (21%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ + + K P ++ GD N + +
Sbjct: 133 LQALLEGQFKQDQPVLVMGDMNISPQDCDIGIGPDNAKRWLKTGKCSFLPEEREWMERLK 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
E + R++ D + I +
Sbjct: 193 GWGLVDSFRHLHPEVTDRFSWFDYRSRGFEDEPKRGLRIDLIMASQHLVPRIKAAGVDYE 252
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 253 LRAMEKPSDHAPIWLELS 270
>gi|241888840|ref|ZP_04776146.1| lpxtg cell wall surface protein [Gemella haemolysans ATCC 10379]
gi|241864516|gb|EER68892.1| lpxtg cell wall surface protein [Gemella haemolysans ATCC 10379]
Length = 866
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + + + + FV+ GDFN S ++ ++ +
Sbjct: 525 EEAKILNAFIKEGLRQNPNLKFVLTGDFNDFEFSDSVKTIVGNELVNLMAE---HEQGDR 581
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD +I ++ K+ ++ + I + + S H P+ ++ DF
Sbjct: 582 YSYFYRGSNQSLDNVLISKNIKDKVVFSPVHI----NASFMEEHGRASDHDPVVVQIDFS 637
Query: 122 KG 123
K
Sbjct: 638 KS 639
>gi|332367348|gb|EGJ45082.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis
SK1059]
Length = 736
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 541 EQAKILNSFVQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDAA---DR 597
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 598 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 653
Query: 122 KG 123
K
Sbjct: 654 KD 655
>gi|332362279|gb|EGJ40079.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis
SK1056]
Length = 749
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 554 EQAKILNSFVQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDAA---DR 610
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 611 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 666
Query: 122 KG 123
K
Sbjct: 667 KD 668
>gi|332359097|gb|EGJ36918.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis SK49]
Length = 749
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 554 EQAKILNSFVQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDAA---DR 610
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 611 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 666
Query: 122 KG 123
K
Sbjct: 667 KD 668
>gi|328946887|gb|EGG41024.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis
SK1087]
Length = 749
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 554 EQAKILNSFVQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDAA---DR 610
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 611 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 666
Query: 122 KG 123
K
Sbjct: 667 KD 668
>gi|327490122|gb|EGF21910.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis
SK1058]
Length = 749
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 554 EQAKILNSFVQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDAA---DR 610
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 611 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 666
Query: 122 KG 123
K
Sbjct: 667 KD 668
>gi|327474564|gb|EGF19969.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis
SK408]
Length = 749
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 554 EQAKILNSFVQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDAA---DR 610
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 611 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 666
Query: 122 KG 123
K
Sbjct: 667 KD 668
>gi|327470461|gb|EGF15917.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis
SK330]
Length = 749
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 554 EQAKILNSFVQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDAA---DR 610
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 611 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 666
Query: 122 KG 123
K
Sbjct: 667 KD 668
>gi|327462051|gb|EGF08380.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis
SK1057]
Length = 720
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 525 EQAKILNSFVQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDAA---DR 581
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 582 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 637
Query: 122 KG 123
K
Sbjct: 638 KD 639
>gi|325695083|gb|EGD36986.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis
SK150]
Length = 749
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 554 EQAKILNSFVQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDAA---DR 610
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 611 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 666
Query: 122 KG 123
K
Sbjct: 667 KD 668
>gi|325690981|gb|EGD32981.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis
SK115]
Length = 749
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 554 EQAKILNSFVQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDAA---DR 610
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 611 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 666
Query: 122 KG 123
K
Sbjct: 667 KD 668
>gi|324991333|gb|EGC23266.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis
SK353]
Length = 749
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 554 EQAKILNSFVQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDAA---DR 610
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 611 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 666
Query: 122 KG 123
K
Sbjct: 667 KD 668
>gi|209809561|ref|YP_002265100.1| membrane protein [Aliivibrio salmonicida LFI1238]
gi|208011124|emb|CAQ81546.1| membrane protein [Aliivibrio salmonicida LFI1238]
Length = 321
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 3/120 (2%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L QQ E + W +++ + ++I GDFN + + ++ +
Sbjct: 200 LEQQTEEVIDWINERNEKKQDYLILGDFNHTLAHPRSWVWKEIQKGTPQDPYLLTEDTKG 259
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ---SDLDTRRSKLSTHCPLTIEY 118
C V + ++ Y R + + + S V +Q D ++ +L+ HCP+ +
Sbjct: 260 NCTVKQWKRNWPKYTTFTRLIDHGISNLSLKKVEVEQLLYDQNDVKKFQLTDHCPIIFKI 319
>gi|125718549|ref|YP_001035682.1| extracellular nuclease [Streptococcus sanguinis SK36]
gi|125498466|gb|ABN45132.1| Extracellular nuclease, putative [Streptococcus sanguinis SK36]
Length = 749
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 554 EQAKILNSFVQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDAA---DR 610
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 611 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 666
Query: 122 KG 123
K
Sbjct: 667 KD 668
>gi|89256562|ref|YP_513924.1| exodeoxyribonuclease III [Francisella tularensis subsp. holarctica
LVS]
gi|115314993|ref|YP_763716.1| exodeoxyribonuclease III [Francisella tularensis subsp. holarctica
OSU18]
gi|156502683|ref|YP_001428748.1| exodeoxyribonuclease III [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|167010026|ref|ZP_02274957.1| exodeoxyribonuclease III [Francisella tularensis subsp. holarctica
FSC200]
gi|254367881|ref|ZP_04983901.1| exodeoxyribonuclease III [Francisella tularensis subsp. holarctica
257]
gi|254369453|ref|ZP_04985465.1| exodeoxyribonuclease III [Francisella tularensis subsp. holarctica
FSC022]
gi|290954628|ref|ZP_06559249.1| short chain dehydrogenase [Francisella tularensis subsp. holarctica
URFT1]
gi|295311920|ref|ZP_06802747.1| short chain dehydrogenase [Francisella tularensis subsp. holarctica
URFT1]
gi|89144393|emb|CAJ79683.1| Exodeoxyribonuclease III [Francisella tularensis subsp. holarctica
LVS]
gi|115129892|gb|ABI83079.1| exodeoxyribonuclease III [Francisella tularensis subsp. holarctica
OSU18]
gi|134253691|gb|EBA52785.1| exodeoxyribonuclease III [Francisella tularensis subsp. holarctica
257]
gi|156253286|gb|ABU61792.1| exodeoxyribonuclease III [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|157122403|gb|EDO66543.1| exodeoxyribonuclease III [Francisella tularensis subsp. holarctica
FSC022]
Length = 262
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 25/139 (17%)
Query: 6 GEWLKKW---ADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------- 42
++LKK+ +++++G F++ GDFN I +
Sbjct: 125 MQFLKKYKEILKEQVESGRDFIVCGDFNIVHKEIDIKNWKSNYGKTSGVLPEEQAWLDHI 184
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ + E R ++ + + ++ +SD
Sbjct: 185 FDDLGWVDTFRVINHEPLQYTWWSNRGQARANNVGW--RIDYHISTSALKDKVVPESDYV 242
Query: 103 TRRSKLSTHCPLTIEYDFE 121
+ + S H PLTI YD+E
Sbjct: 243 YKENWFSDHAPLTINYDYE 261
>gi|160879133|ref|YP_001558101.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
gi|160427799|gb|ABX41362.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
Length = 250
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 35/131 (26%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ +++ + ++ P V+ GD N I + +M+
Sbjct: 124 DEFRRFLKK-LEETKPVVVCGDLNVAHKEIDLKNPNTNQMNAGFTIEERTKFSELLEAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + R K+ D +VS
Sbjct: 183 IDTFRYFYPDAMDMYSWWSYRFKAREKNTGWRIDYFLASQGLESKLVSAKIHSQILG--- 239
Query: 108 LSTHCPLTIEY 118
S HCP+ +E
Sbjct: 240 -SDHCPIELEI 249
>gi|304439168|ref|ZP_07399086.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372300|gb|EFM25888.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 254
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 35/133 (26%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E ++ + ++ P V+ GD N N I + + +
Sbjct: 127 EAFLEYLN-RLDEVKPVVLCGDLNVAHNEIDLKNPESNRKNAGFSDEERDKFTKLLEAGY 185
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+KE ++ D IV +
Sbjct: 186 TDTFRYLYPDKEDEYSWWSYFRQARDRNIGWRIDYFVVSKVLEDKIVEASIH----QNIM 241
Query: 108 LSTHCPLTIEYDF 120
S HCP+++E +
Sbjct: 242 GSDHCPVSVELNL 254
>gi|269957925|ref|YP_003327714.1| exodeoxyribonuclease III Xth [Xylanimonas cellulosilytica DSM
15894]
gi|269306606|gb|ACZ32156.1| exodeoxyribonuclease III Xth [Xylanimonas cellulosilytica DSM
15894]
Length = 316
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 11/135 (8%), Positives = 27/135 (20%), Gaps = 23/135 (17%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------ 43
L Q W + GD+N D
Sbjct: 185 LRTQA---AGWLTA--DPAAQVALVGDWNVIPLDTDVYDPTAFIGSTHVTPAERAAFAAF 239
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + + + + + D + + + +
Sbjct: 240 ADAGYREVSREHLPAERTYTYWDYKQLAFPKNNGMRIDFTWATPALADRVTAVTIDREER 299
Query: 104 RRSKLSTHCPLTIEY 118
+ S H P+ ++
Sbjct: 300 KGKGASDHVPVILDL 314
>gi|223039251|ref|ZP_03609541.1| exodeoxyribonuclease III [Campylobacter rectus RM3267]
gi|222879612|gb|EEF14703.1| exodeoxyribonuclease III [Campylobacter rectus RM3267]
Length = 256
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 30/131 (22%), Gaps = 23/131 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DGL 51
+A + +K G + GD N I + D
Sbjct: 128 AYAQELVKQGKDVIFCGDVNTAHREIDLKNPKANAKTSGFLPIERAWLDEVVSHGFIDTF 187
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++ R + D + T S H
Sbjct: 188 RHVRGDAVDAYSWWSYRFNARAKNVGWRIDYFFISASLKDRLKDAFILSDITG----SDH 243
Query: 112 CPLTIEYDFEK 122
CP+ IE D ++
Sbjct: 244 CPVGIEIDLDR 254
>gi|297193885|ref|ZP_06911283.1| exodeoxyribonuclease [Streptomyces pristinaespiralis ATCC 25486]
gi|197720247|gb|EDY64155.1| exodeoxyribonuclease [Streptomyces pristinaespiralis ATCC 25486]
Length = 277
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 20/131 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------- 48
LK+ + G V+ GD+N + + + +
Sbjct: 146 LKELRARSAADGREVVVCGDWNIAHHEADLKNWKSNRKNSGFLPEEREWLGRVFSEAEYV 205
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
D + P ++ R ++ + D + + V T +
Sbjct: 206 DVVRDLHPDQEGPYTWWSYRGRAFDNDSGWRIDYQVATPGLARRAVKAWVERAATHGERW 265
Query: 109 STHCPLTIEYD 119
S H P+T Y+
Sbjct: 266 SDHAPVTAVYE 276
>gi|39936370|ref|NP_948646.1| putative exonuclease III [Rhodopseudomonas palustris CGA009]
gi|39650225|emb|CAE28748.1| putative exonuclease III [Rhodopseudomonas palustris CGA009]
Length = 260
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGL 51
+ L + A +K+G P V+AGDFN + + G
Sbjct: 130 KRLNRHAATLLKSGAPVVLAGDFNVVPTPADIYPGKSWDKDALVQPAPRKLFAALLRQGW 189
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
E + D+ + + +
Sbjct: 190 TDALRHCHPEDAPYTFWSYWRNRFERDAGLRIDHLLLDPSLAARLKRAGVDRKVREAPEA 249
Query: 109 STHCPLTIEYD 119
S H P I +
Sbjct: 250 SDHAPAWIVIE 260
>gi|183179517|ref|ZP_02957728.1| exodeoxyribonuclease III [Vibrio cholerae MZO-3]
gi|183012928|gb|EDT88228.1| exodeoxyribonuclease III [Vibrio cholerae MZO-3]
Length = 219
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 34/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q L + + V+ GD N +
Sbjct: 77 KRQFYRDLMTYLREHRSNSERLVVMGDINISPLDLDIGIGEANRKRWLQTGKCSFQPEER 136
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ Q + GL+ F Q R++ D + D + +
Sbjct: 137 EWLQTLLDWGLVDTFRQLHPDVSDQFSWFDYRSRGFEDNRGLRIDVILATPTLAETCQEA 196
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 197 GIDYELRAIDKPSDHAPIWATF 218
>gi|156543084|ref|XP_001605156.1| PREDICTED: similar to ENSANGP00000020924 [Nasonia vitripennis]
Length = 391
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 31/128 (24%), Gaps = 24/128 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E KK Q + P +I GD N I + +
Sbjct: 264 EAFKKHI-QDLDKKKPVIICGDMNVAHQEIDLKNPKTNTKNAGFTKEERDGMTDFLQAGF 322
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ ++ N + +++ D ++ +
Sbjct: 323 VDTFRLLYPDKTDAYTFWAYFNNARSKNIGW--RLDYYIVSEKIKNKVCDV--VNRDQVF 378
Query: 108 LSTHCPLT 115
S HCP+
Sbjct: 379 GSDHCPVV 386
>gi|146298594|ref|YP_001193185.1| exodeoxyribonuclease III Xth [Flavobacterium johnsoniae UW101]
gi|146153012|gb|ABQ03866.1| exodeoxyribonuclease III Xth [Flavobacterium johnsoniae UW101]
Length = 253
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 30/126 (23%), Gaps = 22/126 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLI 53
+ ++ + +I GD+N +I D K
Sbjct: 132 YINELKISIPNLIICGDYNICHEAIDIHDPVRNKTVSGFLPEERAWLDAFMKSGFIDSFR 191
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
F ++ R + + D + S HCP
Sbjct: 192 HFNKDPHHYSWWSYRAGARGNNKGWRIDYNLVSNAIEHRLKRAVILPDAV----HSDHCP 247
Query: 114 LTIEYD 119
+ +E +
Sbjct: 248 VLVEIE 253
>gi|86739888|ref|YP_480288.1| exodeoxyribonuclease III [Frankia sp. CcI3]
gi|86566750|gb|ABD10559.1| Exodeoxyribonuclease III [Frankia sp. CcI3]
Length = 304
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 32/130 (24%), Gaps = 19/130 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPD--- 49
L++ + G + GDFN + D ++
Sbjct: 138 ALREVVAEATTQGA-VMTLGDFNIAPTDVDVWDITQFEGATHVTPAERAALAELVDAGLI 196
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+L + R + D D + + + + S
Sbjct: 197 DVLRARWPDDVVYTYWDYRQLCFPKNLGMRIDLALATADVAGRVRAVWVDRAARKGVGTS 256
Query: 110 THCPLTIEYD 119
H P+ ++ D
Sbjct: 257 DHAPVIVDLD 266
>gi|311112410|ref|YP_003983632.1| exodeoxyribonuclease III [Rothia dentocariosa ATCC 17931]
gi|310943904|gb|ADP40198.1| exodeoxyribonuclease III [Rothia dentocariosa ATCC 17931]
Length = 335
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 32/129 (24%), Gaps = 21/129 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
+ W F + GD+N D F+ ++ +G
Sbjct: 207 VNGWL--HADPAAQFALVGDWNVAPEDTDVWDIDFFRENDLTHVSAPEREAFYALLNDEG 264
Query: 51 LLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
L+ + + + D + + + + + S
Sbjct: 265 LVDPVRPYTQGEYTYWDYQAGRFSKNEGMRIDFQLCSPALAARVENAWIDREEREGDGAS 324
Query: 110 THCPLTIEY 118
H P+ IE
Sbjct: 325 DHTPVVIEL 333
>gi|182677440|ref|YP_001831586.1| exodeoxyribonuclease III Xth [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182633323|gb|ACB94097.1| exodeoxyribonuclease III Xth [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 272
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 32/137 (23%), Gaps = 23/137 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--------------------QKM 46
+ + +W + +I GD N
Sbjct: 137 DEMAEWMRTDLIAHRDAIIVGDLNIAPLETDVWSHKALLKVVSHTPIEVEKLGRVINAGP 196
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTR 104
D L P E++ R+ R + + S
Sbjct: 197 WIDALRHHVPPEEKLYTWWSYRSPDWSK-ADKGRRLDHIWVSASLKQHLDGLTILRDSRG 255
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+T++ + +
Sbjct: 256 WDRPSDHVPVTVQLNLD 272
>gi|323351045|ref|ZP_08086702.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis
VMC66]
gi|322122769|gb|EFX94478.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis
VMC66]
Length = 749
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 554 EQAKILNSFVQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDVA---DR 610
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 611 YSYFYRGSNQSLDNIFISKNLAGKTVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 666
Query: 122 KG 123
K
Sbjct: 667 KD 668
>gi|148259957|ref|YP_001234084.1| exodeoxyribonuclease III Xth [Acidiphilium cryptum JF-5]
gi|326403089|ref|YP_004283170.1| exodeoxyribonuclease III [Acidiphilium multivorum AIU301]
gi|146401638|gb|ABQ30165.1| exodeoxyribonuclease III Xth [Acidiphilium cryptum JF-5]
gi|325049950|dbj|BAJ80288.1| exodeoxyribonuclease III [Acidiphilium multivorum AIU301]
Length = 256
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFWQKMD 47
E L++ A ++ F++AGD+N +
Sbjct: 124 MEKLRRHAASLLEHDRDFILAGDYNVCPTDADLAKGALPADDALVRPESRAAFRALIWLG 183
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
L ++ + + + D+ + + + + + + +
Sbjct: 184 LTDALRALHPDETLYTFWDYQAGAWQRDRGLRIDHALLSPRVAERLDTVRVAREERDKPQ 243
Query: 108 LSTHCPLTIEYD 119
S H P+ +
Sbjct: 244 PSDHVPVIVSLR 255
>gi|90415898|ref|ZP_01223831.1| exodeoxyribonuclease III [marine gamma proteobacterium HTCC2207]
gi|90332272|gb|EAS47469.1| exodeoxyribonuclease III [marine gamma proteobacterium HTCC2207]
Length = 271
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 26/138 (18%), Gaps = 26/138 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQKM 46
L + D + GD N N I +
Sbjct: 134 LLAYLDSNFNADDLVSVMGDMNVAANDIDVGIKPENAKRWIKTGKCAFLPEERQWLQNLL 193
Query: 47 DPD--GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLD 102
D +S R+K L S +
Sbjct: 194 DWGLQDSFREQNAADDSYSWFDYRSKGFELEPKRGLRIDLILASPSLMKLVTETGIDTAA 253
Query: 103 TRRSKLSTHCPLTIEYDF 120
K S HCP+ +
Sbjct: 254 RGFEKPSDHCPIWADLRL 271
>gi|30250127|ref|NP_842197.1| exodeoxyribonuclease III:exodeoxyribonuclease III xth [Nitrosomonas
europaea ATCC 19718]
gi|30139234|emb|CAD86104.1| Exodeoxyribonuclease III:Exodeoxyribonuclease III xth [Nitrosomonas
europaea ATCC 19718]
Length = 257
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 38/128 (29%), Gaps = 23/128 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLI 53
+ G ++ GD+N +I + + ++ +
Sbjct: 133 LQSLAECGREVLLCGDWNIAHKAIDLKNWRSNQKNSGFLPEERAWLSTVFDELKLVDVFR 192
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ E + R ++ + + ++ S + + S H P
Sbjct: 193 KINPEPDQYTWWSNRGQAWAKNVGW--RIDYQIATPGLAAMATGVSIY--KAERFSDHAP 248
Query: 114 LTIEYDFE 121
LTI+YDF
Sbjct: 249 LTIDYDFN 256
>gi|126174923|ref|YP_001051072.1| exonuclease III [Shewanella baltica OS155]
gi|153001253|ref|YP_001366934.1| exonuclease III [Shewanella baltica OS185]
gi|217972826|ref|YP_002357577.1| exonuclease III [Shewanella baltica OS223]
gi|125998128|gb|ABN62203.1| Exodeoxyribonuclease III [Shewanella baltica OS155]
gi|151365871|gb|ABS08871.1| exodeoxyribonuclease III [Shewanella baltica OS185]
gi|217497961|gb|ACK46154.1| exodeoxyribonuclease III [Shewanella baltica OS223]
Length = 270
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 29/137 (21%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L + I GD N +
Sbjct: 131 QDLMHYLQTNHSNDEDIAIIGDINISPTDLDIGIGEVNRKRWLKTGKCSFQPEEREWLKT 190
Query: 43 WQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q + E+ E R+K D + D + +V D
Sbjct: 191 LQDWGLVDTFRQLHPERIERYSWFDYRSKGFDDNRGLRIDVILATPSLAARLVESDVDYD 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 251 LRGIDKPSDHAPIWSTF 267
>gi|330814067|ref|YP_004358306.1| exodeoxyribonuclease III [Candidatus Pelagibacter sp. IMCC9063]
gi|327487162|gb|AEA81567.1| exodeoxyribonuclease III [Candidatus Pelagibacter sp. IMCC9063]
Length = 247
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 32/127 (25%), Gaps = 18/127 (14%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMD 47
+ +K+ K K +I GDFN + + +
Sbjct: 116 MDVFEKYIVGKFKKNKNIIITGDFNVIPSEEDVGNPEDWTNDALFKLEIRKKFRSLLNLG 175
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +E + + S + D+ + + + +
Sbjct: 176 FKDGFRLFNKEPKEYTFWDYQQGSWQRNKGLRIDHYLVSDSMIQDLKTIEIDKFTRDNER 235
Query: 108 LSTHCPL 114
S H P+
Sbjct: 236 PSDHVPI 242
>gi|304411895|ref|ZP_07393506.1| exodeoxyribonuclease III [Shewanella baltica OS183]
gi|307303337|ref|ZP_07583092.1| exodeoxyribonuclease III [Shewanella baltica BA175]
gi|304349755|gb|EFM14162.1| exodeoxyribonuclease III [Shewanella baltica OS183]
gi|306913697|gb|EFN44119.1| exodeoxyribonuclease III [Shewanella baltica BA175]
Length = 270
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 29/137 (21%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L + I GD N +
Sbjct: 131 QDLMHYLQTNHSNDEDIAIIGDINISPTDLDIGIGEVNRKRWLKTGKCSFQPEEREWLKT 190
Query: 43 WQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q + E+ E R+K D + D + +V D
Sbjct: 191 LQDWGLVDTFRQLHPERIERYSWFDYRSKGFDDNRGLRIDVILATPSLAARLVESDVDYD 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 251 LRGIDKPSDHAPIWSTF 267
>gi|237737412|ref|ZP_04567893.1| exodeoxyribonuclease III [Fusobacterium mortiferum ATCC 9817]
gi|229421274|gb|EEO36321.1| exodeoxyribonuclease III [Fusobacterium mortiferum ATCC 9817]
Length = 251
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 27/124 (21%), Gaps = 23/124 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
++ P ++ GD N I + + + F
Sbjct: 132 ELDKKKPVIVCGDLNVAHKEIDLKNPKTNRKNAGFSDEEREKMTKLLESGFVDSFRYFYP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ R + D ++ + S HCP+ +
Sbjct: 192 NKTDIYSWWSYRFSARAKNAGWRIDYFLVSDRIKENMKGAEIHTEILG----SDHCPVLL 247
Query: 117 EYDF 120
D
Sbjct: 248 NIDL 251
>gi|255523264|ref|ZP_05390235.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296186225|ref|ZP_06854630.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
gi|255513132|gb|EET89401.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296049493|gb|EFG88922.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
Length = 252
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 32/129 (24%), Gaps = 24/129 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ P ++ GD N I + + +
Sbjct: 127 RDYLKS-LEKNKPVIMCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKFTEFLSAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + + R + + D +VS D S
Sbjct: 186 YRYFNPDKEGAYSWWSYRFNARKNNAGWRIDYFCVSDCLKERLVSADIHTE----VMGSD 241
Query: 111 HCPLTIEYD 119
HCP+ +
Sbjct: 242 HCPVELVIS 250
>gi|153837336|ref|ZP_01990003.1| exodeoxyribonuclease III [Vibrio parahaemolyticus AQ3810]
gi|260903451|ref|ZP_05911846.1| exodeoxyribonuclease III [Vibrio parahaemolyticus AQ4037]
gi|149749367|gb|EDM60140.1| exodeoxyribonuclease III [Vibrio parahaemolyticus AQ3810]
gi|308110362|gb|EFO47902.1| exodeoxyribonuclease III [Vibrio parahaemolyticus AQ4037]
Length = 268
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 13/142 (9%), Positives = 29/142 (20%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q + L + + ++ GD N
Sbjct: 126 KRQFYKDLMTYLNDHHSNDEQLIVMGDINISPIDSDIGIGEPNRKRWLKTGKCSFQPEER 185
Query: 39 -TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + E + R++ D + D + +
Sbjct: 186 EWLQTLLNWGFEDTFRKLYPEVNDRFSWFDYRSRGFDDNRGLRIDVILATPSLAQKCIES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRGIEKPSDHAPIWSTF 267
>gi|150402181|ref|YP_001329475.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
gi|150033211|gb|ABR65324.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
Length = 249
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 25/136 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------ 49
+Q +W + + + + ++ P + GD N I + +
Sbjct: 119 RQ-KWDQDFLNYIKTLENEKPVIFCGDLNVAHKEIDLKNPKNNVKNAGFTPEERIGFDNI 177
Query: 50 ------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
F +E ++ R + F I +
Sbjct: 178 VDSGFIDTFREFNKEPDNYSWWSYRFNARSKNIGW--RIDYFCISKILRDNL--KDAFIM 233
Query: 104 RRSKLSTHCPLTIEYD 119
S HCP+ I ++
Sbjct: 234 SEVMGSDHCPVGIIFE 249
>gi|308175792|ref|YP_003922497.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|307608656|emb|CBI45027.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|328555768|gb|AEB26260.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|328914157|gb|AEB65753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
Length = 252
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 31/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
K + QK+ P ++ GD N I + + +
Sbjct: 128 KDYL-QKLDQKKPVILCGDLNVAHREIDLKNPKANRKNAGFSDQEREAFSVLLNAGFTDS 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + R + ++ + + S
Sbjct: 187 FRYLYPDQEGAYSWWSYRTNAREKNIGW--RLDYVIVSDRLKQRITQAAICA--DIMGSD 242
Query: 111 HCPLTIEYDF 120
HCP+ + D
Sbjct: 243 HCPVEMTLDL 252
>gi|282877708|ref|ZP_06286523.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
gi|281300280|gb|EFA92634.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
Length = 249
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + Q + P +I GD N I + + +
Sbjct: 127 RAYVMQ-LDAIKPVIICGDLNVAHEEIDLKNPKTNRRNAGFTDEEREKMTILLNNGFVDT 185
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E+ + R ++ D +V S H
Sbjct: 186 FRHLYPEQVTYSWWSYRFRAREKNAGWRIDYFLISERLKERLVDAKIHTEILG----SDH 241
Query: 112 CPLTIEY 118
CP+ +E
Sbjct: 242 CPVELEL 248
>gi|303248033|ref|ZP_07334299.1| exodeoxyribonuclease III [Desulfovibrio fructosovorans JJ]
gi|302490590|gb|EFL50495.1| exodeoxyribonuclease III [Desulfovibrio fructosovorans JJ]
Length = 254
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 30/124 (24%), Gaps = 22/124 (17%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGLLIRF 55
+ ++ P V+ GDFN ++ + + F
Sbjct: 133 AETLRRKKPIVVCGDFNTAHTALDLKNAKSNEKTSGFLPEERAWLDRFIAAGYVDTFRMF 192
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
E R K+ D + + S HCP+
Sbjct: 193 EPEGGHYTWWDYRFKARDRNVGWRIDYFFVSEELRGKVRRAWIDS----AVMGSDHCPVG 248
Query: 116 IEYD 119
++ D
Sbjct: 249 LDLD 252
>gi|255993955|ref|ZP_05427090.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
gi|255993623|gb|EEU03712.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
Length = 252
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 24/129 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
+ + + K P +I GD N I + + ++ G
Sbjct: 128 RDYVVKLNKE-KPVIICGDLNVAHTEIDLKNPKTNRRNPGFTDEEREKFTELLEAGFTDT 186
Query: 55 FPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + R + + FL+ N + S
Sbjct: 187 FRYKYPDKEGAYTWWSYRFNARKNNAGW--RIDYFLVSNDVKDKI--EDAKILSDVYGSD 242
Query: 111 HCPLTIEYD 119
HCP+ +E D
Sbjct: 243 HCPVVLELD 251
>gi|225010201|ref|ZP_03700673.1| exodeoxyribonuclease III Xth [Flavobacteria bacterium MS024-3C]
gi|225005680|gb|EEG43630.1| exodeoxyribonuclease III Xth [Flavobacteria bacterium MS024-3C]
Length = 254
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 30/128 (23%), Gaps = 22/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
+ +T VI GD+N +I D K
Sbjct: 131 DYTKSLKETDPNLVICGDYNICHQAIDIHDPVRNKNISGFLPEERAWLSALLESGFTDSF 190
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + R S + D I++ S HC
Sbjct: 191 RQINTAPDQYSWWSYRANSRANNKGWRLDYALVSKPLDTQILNAQILSAAV----HSDHC 246
Query: 113 PLTIEYDF 120
P+T+E
Sbjct: 247 PVTVEISL 254
>gi|56708053|ref|YP_169949.1| exodeoxyribonuclease III [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110670524|ref|YP_667081.1| exodeoxyribonuclease III [Francisella tularensis subsp. tularensis
FSC198]
gi|134301867|ref|YP_001121836.1| exodeoxyribonuclease III [Francisella tularensis subsp. tularensis
WY96-3418]
gi|187931705|ref|YP_001891689.1| exodeoxyribonuclease III [Francisella tularensis subsp.
mediasiatica FSC147]
gi|224457140|ref|ZP_03665613.1| exodeoxyribonuclease III [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254370539|ref|ZP_04986544.1| hypothetical protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254874855|ref|ZP_05247565.1| xthA, exodeoxyribonuclease III [Francisella tularensis subsp.
tularensis MA00-2987]
gi|56604545|emb|CAG45592.1| Exodeoxyribonuclease III [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110320857|emb|CAL08975.1| Exodeoxyribonuclease III [Francisella tularensis subsp. tularensis
FSC198]
gi|134049644|gb|ABO46715.1| exodeoxyribonuclease III [Francisella tularensis subsp. tularensis
WY96-3418]
gi|151568782|gb|EDN34436.1| hypothetical protein FTBG_00321 [Francisella tularensis subsp.
tularensis FSC033]
gi|187712614|gb|ACD30911.1| exodeoxyribonuclease III [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254840854|gb|EET19290.1| xthA, exodeoxyribonuclease III [Francisella tularensis subsp.
tularensis MA00-2987]
Length = 262
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 22/132 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------------------WQKMDPD 49
K+ +++++G F++ GDFN I + + +
Sbjct: 132 KEILKEQVESGRDFIVCGDFNIVHKEIDIKNWKSNYGKTSGVLPEEQAWLDHIFDDLGWV 191
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
E R ++ + + ++ +SD + + S
Sbjct: 192 DTFRVINHEPLQYTWWSNRGQARANNVGW--RIDYHISTSALKDKVVPESDYVYKENWFS 249
Query: 110 THCPLTIEYDFE 121
H PLTI YD+E
Sbjct: 250 DHAPLTINYDYE 261
>gi|156973843|ref|YP_001444750.1| exonuclease III [Vibrio harveyi ATCC BAA-1116]
gi|156525437|gb|ABU70523.1| hypothetical protein VIBHAR_01553 [Vibrio harveyi ATCC BAA-1116]
Length = 268
Score = 64.9 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/143 (11%), Positives = 32/143 (22%), Gaps = 26/143 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q + L + + ++ GD N
Sbjct: 126 KRQFYKDLMTYLNDHHTNDEQLIVMGDINISPIDSDIGIGEPNRKRWLKTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ + + G F R++ D + D + V
Sbjct: 186 EWLKTLLDWGFEDTFRNLHPEVNDRFSWFDYRSRGFDDNRGLRIDVILVTPSLAKKCVES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEYD 119
D K S H P+ +
Sbjct: 246 DIDYELRGIEKPSDHAPIWSTFQ 268
>gi|239981665|ref|ZP_04704189.1| exodeoxyribonuclease [Streptomyces albus J1074]
gi|291453527|ref|ZP_06592917.1| exodeoxyribonuclease [Streptomyces albus J1074]
gi|291356476|gb|EFE83378.1| exodeoxyribonuclease [Streptomyces albus J1074]
Length = 264
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 34/130 (26%), Gaps = 20/130 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E+LK+ + G V+ GD+N + +
Sbjct: 132 EYLKELRARAAADGREVVVCGDWNIAHQEADLKNWKANRKSSGFLPEERAWLDRVYAEAG 191
Query: 50 --GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
++ E+ R ++ + D + V T
Sbjct: 192 YADVMRALHPEQAGPYSWWSYRGRAFDNDSGWRIDLHVATPGLAARAVKGQVERAATHEE 251
Query: 107 KLSTHCPLTI 116
+ S H P+T+
Sbjct: 252 RWSDHAPVTV 261
>gi|291543155|emb|CBL16265.1| exodeoxyribonuclease III [Ruminococcus bromii L2-63]
Length = 252
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 30/129 (23%), Gaps = 24/129 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
K + + ++ P ++ GD N I + + +
Sbjct: 128 KAYLKK-LEEKKPVIMCGDLNVAHKEIDLKNPKTNRKNAGFTDEERSKMTALLDDGFIDT 186
Query: 52 LIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + E R K+ D + S
Sbjct: 187 YRYFYPDTEGVYSWWSYRFKAREKNAGWRIDYFIVSKALESKLDGAKIHTEILG----SD 242
Query: 111 HCPLTIEYD 119
HCP+ + D
Sbjct: 243 HCPVELTID 251
>gi|229134542|ref|ZP_04263353.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
gi|228648935|gb|EEL04959.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
Length = 252
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 30/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ P + GD N + + + +P
Sbjct: 128 RAYIK-RLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEEREKFTCVLEAGFIDT 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + R + D I + S
Sbjct: 187 YRYLYPDQEGAYSWWSYRMGARAKNIGWRLDYFVISERLKHKITDAKINSEIMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|218281326|ref|ZP_03487814.1| hypothetical protein EUBIFOR_00379 [Eubacterium biforme DSM 3989]
gi|218217511|gb|EEC91049.1| hypothetical protein EUBIFOR_00379 [Eubacterium biforme DSM 3989]
Length = 249
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 30/132 (22%), Gaps = 22/132 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
EW K ++ P + GDFN I + +
Sbjct: 121 MEWDKAFSAYLKSLDKPVMACGDFNVANEEIDIKNPKTNHKNAGFTDEERNSFKENLLAY 180
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
EK R K+ +L+
Sbjct: 181 FVDTYRSLYPEKVEYSWWSYRFKAREKNAGW--RIDYWLVSPELKDKI--VDAKILTDIY 236
Query: 108 LSTHCPLTIEYD 119
S HCP+ ++ +
Sbjct: 237 GSDHCPVQLDIE 248
>gi|90417808|ref|ZP_01225720.1| exodeoxyribonuclease III [Aurantimonas manganoxydans SI85-9A1]
gi|90337480|gb|EAS51131.1| exodeoxyribonuclease III [Aurantimonas manganoxydans SI85-9A1]
Length = 276
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 21/133 (15%)
Query: 7 EWLKKWAD---QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDP 48
WL ++A+ + TG P V+AGD+N + + ++
Sbjct: 123 RWLGRFANHAADLMATGAPVVLAGDYNVIPTELDVYKPEHWVDDALFRPEVREAFHRLLD 182
Query: 49 DGLLIR---FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
G E + + D+ + +++
Sbjct: 183 AGWTDAIRSLHPEASIYTFWDYLRNAWGRDAGLRLDHLLLSPTLAPRLLAAGVHRDVRGW 242
Query: 106 SKLSTHCPLTIEY 118
K S H P+ IE
Sbjct: 243 EKASDHAPVWIEI 255
>gi|1944175|dbj|BAA19649.1| exonuclease III [Aggregatibacter actinomycetemcomitans]
Length = 267
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD-------------------------TDDFW 43
L+++ +Q P +I GD N + + +
Sbjct: 132 LQRYLEQDHNAQNPVIIMGDMNISPSDLDIGIGEENRKRWLRTGKCSFLPEEREWYQRLY 191
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
D P + R+K D + D+ V +
Sbjct: 192 AYGLEDTFRHMNPTVNDKFSWFDYRSKGFDDNRGLRIDHILANKALVAHCVDTGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
+K S H P+ E+
Sbjct: 252 AMNKPSDHAPIWAEF 266
>gi|120598407|ref|YP_962981.1| exonuclease III [Shewanella sp. W3-18-1]
gi|146293514|ref|YP_001183938.1| exonuclease III [Shewanella putrefaciens CN-32]
gi|120558500|gb|ABM24427.1| Exodeoxyribonuclease III [Shewanella sp. W3-18-1]
gi|145565204|gb|ABP76139.1| Exodeoxyribonuclease III [Shewanella putrefaciens CN-32]
Length = 270
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 28/137 (20%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L + I GD N +
Sbjct: 131 QDLMHYLQTNHSNDEDIAIIGDINISPTDLDIGIGEVNRKRWLKTGKCSFQPEEREWLKT 190
Query: 43 WQKMDPDGLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q + E+ R+K D + D + +V D
Sbjct: 191 LQDWGLIDTFRQLHPERTERYSWFDYRSKGFDDNRGLRIDVILATPSLAARLVESDVDYD 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 251 LRGIDKPSDHAPIWSTF 267
>gi|296128411|ref|YP_003635661.1| exodeoxyribonuclease III Xth [Cellulomonas flavigena DSM 20109]
gi|296020226|gb|ADG73462.1| exodeoxyribonuclease III Xth [Cellulomonas flavigena DSM 20109]
Length = 264
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 10/130 (7%), Positives = 26/130 (20%), Gaps = 20/130 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ + W + GD+N D
Sbjct: 134 DAAEGWLTA--DPRAQVALVGDWNIAPLDTDVWDIARFAGRTHVTPAERQAFEALAHAGY 191
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + + + D + + + + +
Sbjct: 192 SEVSRVHVPAEHTYTYWDYQQLRFPRNEGMRIDLTYASPTLAARVTGVRIERDERKGKQP 251
Query: 109 STHCPLTIEY 118
S H P+ +E
Sbjct: 252 SDHVPVVLEI 261
>gi|73538157|ref|YP_298524.1| endonuclease/exonuclease/phosphatase [Ralstonia eutropha JMP134]
gi|72121494|gb|AAZ63680.1| Endonuclease/exonuclease/phosphatase [Ralstonia eutropha JMP134]
Length = 653
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 22/140 (15%)
Query: 3 SQQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
S+ L W ++ GD N + ++ D + ++
Sbjct: 462 SRAARALADWLGTSPTGVANAGKLVIGDLNSYASEDPL-TVLAREGYEDIVARFA--GRD 518
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDT 103
+ V LDY + D + S V+ D+
Sbjct: 519 AYTYVFDGRAGYLDYALADAALVPRIRAVSIWHVNADEPVAFAYAQAYRNAAQQERYYAP 578
Query: 104 RRSKLSTHCPLTIEYDFEKG 123
+ S H P+ ++ + +
Sbjct: 579 DAWRASDHDPVLVDLSWREA 598
>gi|302186191|ref|ZP_07262864.1| exonuclease III [Pseudomonas syringae pv. syringae 642]
Length = 270
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 30/144 (20%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ E L+ + + + P ++ GD N
Sbjct: 127 QRFYENLQTLLESQFRNDQPLIVMGDVNISPQDCDIGIGADNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVS 95
+ + E + R++ D + I
Sbjct: 187 WMERLKSWGLVDTFRHLYPEVVDRFSWFDYRSRGFEDEPKRGLRIDLIMTSTGLQPRIKE 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 247 AGVDYDLRGMEKPSDHAPIWLELS 270
>gi|16265144|ref|NP_437936.1| exodeoxyribonuclease III protein [Sinorhizobium meliloti 1021]
gi|15141283|emb|CAC49796.1| probable exodeoxyribonuclease III protein [Sinorhizobium meliloti
1021]
Length = 257
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 33/128 (25%), Gaps = 18/128 (14%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGLLIR 54
+ A ++TG+P V+AGD+N ++ + G L
Sbjct: 129 NQHAAALLETGVPVVLAGDYNVVPEPRDIYPTRSYDDNALVQPESRAAFRSLVDQGWLDA 188
Query: 55 F---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++E R + D+ + S H
Sbjct: 189 LRKIHPKEELFTFWDYRRNRWQRDAGLRLDHILLSRKLRRRLTGAGIDREIRALEGSSDH 248
Query: 112 CPLTIEYD 119
P+ +
Sbjct: 249 APVWVSMR 256
>gi|308050255|ref|YP_003913821.1| exodeoxyribonuclease III [Ferrimonas balearica DSM 9799]
gi|307632445|gb|ADN76747.1| Exodeoxyribonuclease III [Ferrimonas balearica DSM 9799]
Length = 268
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 14/142 (9%), Positives = 28/142 (19%), Gaps = 25/142 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ L + + V+ GD N +
Sbjct: 127 RRFYADLMSHLNTHRQADEQVVVMGDINISPTDLDIGIGEPNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
E+ ++ R++ D + D + + S
Sbjct: 187 WLATLLNWGLTDSFRHLNPEEAQTYSWFDYRSRGFDDNRGLRIDVILTSAPLTARLDSAG 246
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
K S H P+
Sbjct: 247 VDYELRGIEKPSDHAPIWTTIR 268
>gi|297571824|ref|YP_003697598.1| exodeoxyribonuclease III Xth [Arcanobacterium haemolyticum DSM
20595]
gi|296932171|gb|ADH92979.1| exodeoxyribonuclease III Xth [Arcanobacterium haemolyticum DSM
20595]
Length = 290
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 39/139 (28%), Gaps = 21/139 (15%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI-------- 53
L + L + + + ++AGDFN T+ G+L
Sbjct: 148 LDRVTTRLAQLRTNRSEELPHILVAGDFNIVHTERDITNWKSNHNKTAGVLDPEIAYVDK 207
Query: 54 -------------RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
E+ +R K+ + D D + S
Sbjct: 208 WTETMGYIDVQRYLIGDEQAEYTWWSQRGKAFDNNVGWRIDYHLVDPDLAQRAHSLRIDR 267
Query: 101 LDTRRSKLSTHCPLTIEYD 119
++ + S H PL + YD
Sbjct: 268 AESYDQRWSDHAPLIVTYD 286
>gi|78486391|ref|YP_392316.1| exonuclease III [Thiomicrospira crunogena XCL-2]
gi|78364677|gb|ABB42642.1| Exodeoxyribonuclease III [Thiomicrospira crunogena XCL-2]
Length = 273
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/141 (11%), Positives = 29/141 (20%), Gaps = 27/141 (19%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L + ++ V+ GDFN
Sbjct: 133 QDLMTYLKEECSPEQNLVVIGDFNISPEDKDIGIGEPNRKRWLRDGKTSFLPEEREWWAT 192
Query: 43 WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNK--NFLIDNSFSIVSYDQS 99
+ E++ R+K + V +
Sbjct: 193 LIGWGLKDTYRKVHPEEDRIFSWFDYRSKGFDAEPKRGLRIDTVLATKCLTEKAVDSGVA 252
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
K S H P+ E+ F
Sbjct: 253 YDIRGMVKPSDHAPVWTEFKF 273
>gi|261868358|ref|YP_003256280.1| exonuclease III [Aggregatibacter actinomycetemcomitans D11S-1]
gi|3132266|dbj|BAA28143.1| deoxynuclease [Actinobacillus actinomycetemcomitans]
gi|261413690|gb|ACX83061.1| exodeoxyribonuclease III [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 267
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD-------------------------TDDFW 43
L+++ +Q P +I GD N + + +
Sbjct: 132 LQRYLEQDHNAQNPVIIMGDMNISPSDLDIGIGEENRKRWLRTGKCSFLPEEREWYQRLY 191
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
D P + R+K D + D+ V +
Sbjct: 192 AYGLEDTFRHMNPTVNDKFSWFDYRSKGFDDNRGLRIDHILANKALVAHCVDTGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
+K S H P+ E+
Sbjct: 252 AMNKPSDHAPIWAEF 266
>gi|301062581|ref|ZP_07203216.1| exodeoxyribonuclease III [delta proteobacterium NaphS2]
gi|300443317|gb|EFK07447.1| exodeoxyribonuclease III [delta proteobacterium NaphS2]
Length = 256
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 27/122 (22%), Gaps = 19/122 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
L + P ++AGDFN ++ D + +
Sbjct: 126 LYDHIAGRYDPDAPLLVAGDFNVALDDRDVYDPDGFRDGVGFHPEEQALMKMFFQWGLVD 185
Query: 51 LLIRFPQEKESTCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + E + R D + + + K S
Sbjct: 186 IFRQHVSEPQQYTFWDYRIPNGFKRNMGWRIDYILGTKPLTEKSTAIWIDNQSRGLKKPS 245
Query: 110 TH 111
H
Sbjct: 246 DH 247
>gi|325673954|ref|ZP_08153644.1| exodeoxyribonuclease III [Rhodococcus equi ATCC 33707]
gi|325555219|gb|EGD24891.1| exodeoxyribonuclease III [Rhodococcus equi ATCC 33707]
Length = 259
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 8/119 (6%), Positives = 22/119 (18%), Gaps = 18/119 (15%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPDGLLIRFPQEK 59
+ GD+N D + + ++
Sbjct: 140 NPDAQIALVGDWNVAPTDEDVWDPAFFEGKTHTSQPERDAFDAFAEAGFADVVRPHAPGP 199
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ D + + + + S H P+ ++
Sbjct: 200 GVYTYWDYTQLRFPKRQGMRIDYVLGSPAFAARVTGAHIDRDERKGKGASDHAPVVVDL 258
>gi|312141216|ref|YP_004008552.1| exodeoxyribonuclease iii [Rhodococcus equi 103S]
gi|311890555|emb|CBH49873.1| exodeoxyribonuclease III [Rhodococcus equi 103S]
Length = 266
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 8/119 (6%), Positives = 22/119 (18%), Gaps = 18/119 (15%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPDGLLIRFPQEK 59
+ GD+N D + + ++
Sbjct: 147 NPDAQIALVGDWNVAPTDEDVWDPAFFEGKTHTSQPERDAFDAFAEAGFADVVRPHTPGP 206
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ D + + + + S H P+ ++
Sbjct: 207 GVYTYWDYTQLRFPKRQGMRIDYVLGSPAFAARVTGAHIDRDERKGKGASDHAPVVVDL 265
>gi|257054579|ref|YP_003132411.1| exodeoxyribonuclease III [Saccharomonospora viridis DSM 43017]
gi|256584451|gb|ACU95584.1| exodeoxyribonuclease III [Saccharomonospora viridis DSM 43017]
Length = 265
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 20/131 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------- 48
L D+ G ++ GD+N + + + +
Sbjct: 134 LATLRDKASSEGKEVLVVGDWNIAHAEVDLKNWKANRKNSGFLPEERAWLSRVFDELGYV 193
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
D P+ R ++ + D + + S ++ +
Sbjct: 194 DVQRHLDPEGPGPYTWWSYRGRAFDNDAGWRIDYQIATPGLAQRCTSMVVERAESYDKRW 253
Query: 109 STHCPLTIEYD 119
S H P+T Y+
Sbjct: 254 SDHAPVTATYE 264
>gi|218709053|ref|YP_002416674.1| exonuclease III [Vibrio splendidus LGP32]
gi|218322072|emb|CAV18146.1| Exodeoxyribonuclease III [Vibrio splendidus LGP32]
Length = 268
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/142 (10%), Positives = 28/142 (19%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q + L + + ++ GD N I
Sbjct: 126 KRQFYKDLMTYLNDYHNKDEQVIVMGDINISPTDIDIGIGEPNAKRWLKTGKCSFQPEER 185
Query: 39 -TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
E + R+K +D + D +
Sbjct: 186 EWLKTLMDWGFVDSFRLLHPEVNDQYSWFDYRSKGFVDNRGLRIDVVLATQKLADKCTEA 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRGIEKPSDHAPIWSTF 267
>gi|71735024|ref|YP_274825.1| exonuclease III [Pseudomonas syringae pv. phaseolicola 1448A]
gi|257487832|ref|ZP_05641873.1| exonuclease III [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|289625127|ref|ZP_06458081.1| exonuclease III [Pseudomonas syringae pv. aesculi str. NCPPB3681]
gi|289648704|ref|ZP_06480047.1| exonuclease III [Pseudomonas syringae pv. aesculi str. 2250]
gi|71555577|gb|AAZ34788.1| exodeoxyribonuclease III [Pseudomonas syringae pv. phaseolicola
1448A]
gi|320324615|gb|EFW80692.1| exonuclease III [Pseudomonas syringae pv. glycinea str. B076]
gi|320328987|gb|EFW84986.1| exonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
gi|330867998|gb|EGH02707.1| exonuclease III [Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330880714|gb|EGH14863.1| exonuclease III [Pseudomonas syringae pv. glycinea str. race 4]
gi|330985313|gb|EGH83416.1| exonuclease III [Pseudomonas syringae pv. lachrymans str. M301315]
gi|331008544|gb|EGH88600.1| exonuclease III [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 270
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 30/144 (20%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ E L+ + P ++ GD N
Sbjct: 127 QRFYENLQTLLESHFSNEQPLIVMGDVNISPQDCDIGIGADNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVS 95
+ + E + R++ D + I +
Sbjct: 187 WMERLKNWGLVDSFRHLYPEVVDRFSWFDYRSRGFEDEPKRGLRIDLIMTSTGLQPRIKA 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +E +
Sbjct: 247 AGVDYDLRGMEKPSDHAPIWLELN 270
>gi|315221940|ref|ZP_07863851.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
anginosus F0211]
gi|315188906|gb|EFU22610.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
anginosus F0211]
Length = 736
Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
Query: 4 QQGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + +K FV+ GDFN S ++ ++ +
Sbjct: 558 EQAKLLNAFVKEGLKQNPNLKFVLTGDFNDFEFSETAKAVAGNELVN---MMLNHDAADR 614
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF- 120
+ + SLD + ++ + + + I + + S H P+ + DF
Sbjct: 615 YSYFYRGSNQSLDNIFVSKNIADKTVFSPVHI----NASFMEEHGRASDHDPVIAQLDFS 670
Query: 121 -EKGN 124
+KGN
Sbjct: 671 QKKGN 675
>gi|262404202|ref|ZP_06080757.1| exodeoxyribonuclease III [Vibrio sp. RC586]
gi|262349234|gb|EEY98372.1| exodeoxyribonuclease III [Vibrio sp. RC586]
Length = 268
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 34/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q L + + V+ GD N +
Sbjct: 126 KRQFYRDLMTYLGEHRSNAERLVVMGDINISPLDLDIGIGEANRKRWLQTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ Q + GL+ F Q R++ D + D + +
Sbjct: 186 EWLQSLMDWGLVDTFRQLHPEVSDQFSWFDYRSRGFDDNRGLRIDVILATPTLAETCQEA 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRGIDKPSDHAPIWATF 267
>gi|325961961|ref|YP_004239867.1| exodeoxyribonuclease III [Arthrobacter phenanthrenivorans Sphe3]
gi|323468048|gb|ADX71733.1| Exodeoxyribonuclease III [Arthrobacter phenanthrenivorans Sphe3]
Length = 261
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 11/137 (8%), Positives = 26/137 (18%), Gaps = 25/137 (18%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------- 41
L + L + GD+N D
Sbjct: 128 LKTHAQELV-----TQDPQAQVALMGDWNIAPFDEDVWDIDLFINNRSTHVSPPERAAFH 182
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
++ ++ + + D + +
Sbjct: 183 AFESAGFTDVVRPYTPGPGVYTYWDYTQLRFPKKEGMRIDFVLASPALAARVTGASIDRE 242
Query: 102 DTRRSKLSTHCPLTIEY 118
+ + S H P+ +E
Sbjct: 243 ERKGKGASDHAPVVVEL 259
>gi|184199810|ref|YP_001854017.1| exodeoxyribonuclease III [Kocuria rhizophila DC2201]
gi|183580040|dbj|BAG28511.1| exodeoxyribonuclease III [Kocuria rhizophila DC2201]
Length = 268
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 29/131 (22%), Gaps = 23/131 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------------FWQKMDP 48
K+W + + GD+N D F +
Sbjct: 140 KQWLQE--DPDAQIALVGDWNVAPQDDDVWDIQLFKEGGYTHVSEPERAAFHAFIEDAGY 197
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + + D + + + + +
Sbjct: 198 QDVVRPRHPGPGVYTYWDYKQLRFPKKEGMRIDFQLCSPALAARVQDAWIDRDERKGKGA 257
Query: 109 STHCPLTIEYD 119
S H P+ IE D
Sbjct: 258 SDHAPVVIEID 268
>gi|332358304|gb|EGJ36130.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis
SK355]
Length = 749
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 554 EQAKILNSFVQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDVA---DR 610
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 611 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 666
Query: 122 KG 123
K
Sbjct: 667 KD 668
>gi|329115285|ref|ZP_08244040.1| Hypothetical protein APO_2103 [Acetobacter pomorum DM001]
gi|326695728|gb|EGE47414.1| Hypothetical protein APO_2103 [Acetobacter pomorum DM001]
Length = 139
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 10/122 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L QQ L W + + F I GDFNR + D + + L S
Sbjct: 22 LWQQFAVLDAWVAIRTQHHEAFAIMGDFNRHLT---VHDPLFLTLLRIAPLDLVTAGTAS 78
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
C +D+ ++ + + I NS + + LS HCP++I
Sbjct: 79 PCQNGSY---FIDHIILGGAARAWKIPNSLRVTPL----AEEVGQTLSDHCPVSITLQLP 131
Query: 122 KG 123
Sbjct: 132 SA 133
>gi|295838281|ref|ZP_06825214.1| exodeoxyribonuclease III [Streptomyces sp. SPB74]
gi|197698261|gb|EDY45194.1| exodeoxyribonuclease III [Streptomyces sp. SPB74]
Length = 274
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 33/134 (24%), Gaps = 22/134 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------GLLIRFPQEKES 61
LK+ + G ++ GD+N + + + L
Sbjct: 141 LKELRGRAAAEGREVLVCGDWNIAHTEADLKNWRGNRKNAGFLPEEREWLSRVLDPGDGG 200
Query: 62 T---------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
R ++ + D + V + T
Sbjct: 201 YVDVVRGQYPGTEGPYSWWSYRGRAFDNDTGWRIDYHMASAGLAERAVKAEVERAATHAE 260
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+T+ Y+
Sbjct: 261 RWSDHAPVTVTYEM 274
>gi|114327927|ref|YP_745084.1| exodeoxyribonuclease III [Granulibacter bethesdensis CGDNIH1]
gi|114316101|gb|ABI62161.1| exodeoxyribonuclease III [Granulibacter bethesdensis CGDNIH1]
Length = 259
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 37/132 (28%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-------TDDFWQ-----------KMD 47
E L + A + G ++AGD+N D + +
Sbjct: 127 MEHLAQHAASLLAAGEDLILAGDYNVCPTEEDYAPGALPPEDALLRPETRARFRSLLWLG 186
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + + + D+ + ++ ++ + +
Sbjct: 187 LTDAVRAMRPSGQIYTFWDYQAGAWPRDRGLRIDHALLSSRMAERLIEALPDRMERDQPQ 246
Query: 108 LSTHCPLTIEYD 119
S H P+ I ++
Sbjct: 247 PSDHVPVIISFE 258
>gi|25029135|ref|NP_739189.1| putative exodeoxyribonuclease III [Corynebacterium efficiens
YS-314]
gi|259505870|ref|ZP_05748772.1| exodeoxyribonuclease III [Corynebacterium efficiens YS-314]
gi|23494422|dbj|BAC19389.1| putative exodeoxyribonuclease III [Corynebacterium efficiens
YS-314]
gi|259166544|gb|EEW51098.1| exodeoxyribonuclease III [Corynebacterium efficiens YS-314]
Length = 261
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 12/126 (9%), Positives = 23/126 (18%), Gaps = 14/126 (11%)
Query: 8 WLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTD------------DFWQKMDPDGLLI 53
L+ + ++ GDFN D
Sbjct: 135 ALRNHVADVLRANPEEKMILLGDFNIAPTDQDVWDISAFEGHTHVTEPERAAFQQLIEAG 194
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
K + L + + + S H P
Sbjct: 195 LTETSPGPGTFTYWDYKGARFLKGEGMRIDFQLATPALTADHTFVDVEERGGKGASDHAP 254
Query: 114 LTIEYD 119
+ ++Y
Sbjct: 255 VIVDYS 260
>gi|218506516|ref|ZP_03504394.1| exodeoxyribonuclease III protein [Rhizobium etli Brasil 5]
Length = 149
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
L +A + ++ +P ++AGDFN I + ++ G
Sbjct: 12 RRLSAYAAELLEIEVPSILAGDFNVMPTEIDVYKPERWLDDALFRPEVRKAYAQLVAQGW 71
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ S + D+ + + S
Sbjct: 72 TDAVRHLHPGERIYTFWKYWRNSFERDAGLRIDHLLLSPTVAPWLRSACVRRKPRGWEHT 131
Query: 109 STHCPLTIEY 118
S H P+ IE
Sbjct: 132 SDHAPVMIEL 141
>gi|152986656|ref|YP_001346586.1| PKD domain-containing protein [Pseudomonas aeruginosa PA7]
gi|150961814|gb|ABR83839.1| PKD domain containing protein [Pseudomonas aeruginosa PA7]
Length = 780
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 21/139 (15%)
Query: 3 SQQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ + L W D ++I GD N + L+ R +
Sbjct: 636 ARAAQALVDWLASDPTAAKDPDYLIIGDLNSYAKEDPVN--VIRAAGYTDLVARQAGAGK 693
Query: 61 STCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDLDT 103
V LD+ + + + + ++ Y+ S
Sbjct: 694 GYSYVFSGQSGYLDHALANASLARQVRGAVEWHINADEPRVLDYNLEFKTPRQQDSLYSA 753
Query: 104 RRSKLSTHCPLTIEYDFEK 122
+ S H P+ I D +
Sbjct: 754 EPYRASDHDPVVIGIDLRR 772
>gi|54309891|ref|YP_130911.1| exonuclease III [Photobacterium profundum SS9]
gi|46914330|emb|CAG21109.1| putative exodeoxyribonuclease III [Photobacterium profundum SS9]
Length = 268
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 12/135 (8%), Positives = 27/135 (20%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L + + ++ GD N +
Sbjct: 133 LMNYLNTHHTNEEEVIVMGDINISPIDLDIGIGPANAKRWLKTGKCSFQLIEREWLKTLM 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + + R+K +D + D + +
Sbjct: 193 DWGFTDTFRQLHPDVDDQFSWFDYRSKGFVDNRGLRIDVVLATPSLAARCIDAGIDYELR 252
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 253 GIEKPSDHAPIWSTF 267
>gi|254464804|ref|ZP_05078215.1| endonuclease/exonuclease/phosphatase family protein
[Rhodobacterales bacterium Y4I]
gi|206685712|gb|EDZ46194.1| endonuclease/exonuclease/phosphatase family protein
[Rhodobacterales bacterium Y4I]
Length = 331
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 36/139 (25%), Gaps = 22/139 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-----------------TDDFWQKMD 47
Q WL + G ++ GD N + G D Q +
Sbjct: 193 QARWLHLRVADHVAAGEHVIVLGDLNDGPGADGYEKDFGQSSIEIVLGDLLNDPHAQSLL 252
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK-----NFLIDNSFSIVSYDQSDLD 102
+ + + + LDY +I + Y +L
Sbjct: 253 QPRATSLPSTSRFYNPDTKRYFPALLDYVMISHSLMRFDPQWRIWHPFEDAECYADEELR 312
Query: 103 TRRSKLSTHCPLTIEYDFE 121
S H P+T++ E
Sbjct: 313 EALLNASDHFPVTLDIALE 331
>gi|163782364|ref|ZP_02177362.1| exodeoxyribonuclease III [Hydrogenivirga sp. 128-5-R1-1]
gi|159882397|gb|EDP75903.1| exodeoxyribonuclease III [Hydrogenivirga sp. 128-5-R1-1]
Length = 258
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 27/134 (20%), Gaps = 20/134 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ L ++ P + GDFN I D K
Sbjct: 125 DRLLRYLSDNFSPEEPICMVGDFNVAREDIDVFDPELLKDTIGTMKEEREAFERVLKWGF 184
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS-- 106
++ + D + +R
Sbjct: 185 IDAFRYLYPDRVQFTWWDYIGGMIWKDKGMRIDYILITEPLLGKLKEVYVDLWPRKRRTP 244
Query: 107 KLSTHCPLTIEYDF 120
K S H P+ ++
Sbjct: 245 KPSDHAPVIGVFEL 258
>gi|293392089|ref|ZP_06636423.1| exonuclease III [Aggregatibacter actinomycetemcomitans D7S-1]
gi|290952623|gb|EFE02742.1| exonuclease III [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 267
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD-------------------------TDDFW 43
L+++ +Q P +I GD N + + +
Sbjct: 132 LQRYLEQDHNAQNPVIIMGDMNISPSDLDIGIGEENRKRWLRTGKCSFLPEEREWYQRLY 191
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
D P + R+K D + D+ V +
Sbjct: 192 AYGLEDTFRHMNPTVNDKFSWFDYRSKGFDDNRGLRIDHILANKALVAHCVDTGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
+K S H P+ E+
Sbjct: 252 AMNKPSDHAPIWAEF 266
>gi|282865502|ref|ZP_06274553.1| exodeoxyribonuclease III Xth [Streptomyces sp. ACTE]
gi|282559546|gb|EFB65097.1| exodeoxyribonuclease III Xth [Streptomyces sp. ACTE]
Length = 271
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 20/123 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP--------------------DGLLIRFP 56
G ++ GD+N + K + D + P
Sbjct: 148 AAAGREVLVCGDWNIAHREADLKNWKANKKNSGFLPEERAWLTRVFEEAAYVDVVRALHP 207
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ R ++ + D + + V T + S H P+T+
Sbjct: 208 DQEGPYSWWSYRGRAFDNDAGWRIDYQVATEGLAARAVKAWVERAATHGERWSDHAPVTV 267
Query: 117 EYD 119
Y+
Sbjct: 268 TYE 270
>gi|330941805|gb|EGH44552.1| exonuclease III [Pseudomonas syringae pv. pisi str. 1704B]
Length = 270
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 31/144 (21%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ E L+ + + + P ++ GD N
Sbjct: 127 RRFYENLQTLLEGQFRNDQPLIVMGDVNISPQDCDIGIGADNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVS 95
+ + E + R++ D + + I
Sbjct: 187 WMERLKNWGLVDSFRHLYPEVVDRFSWFDYRSRGFEDEPKRGLRIDLIMTSSGLQPRIKE 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 247 AGVDYDLRGMEKPSDHAPIWLELS 270
>gi|288959479|ref|YP_003449820.1| exodeoxyribonuclease III [Azospirillum sp. B510]
gi|288911787|dbj|BAI73276.1| exodeoxyribonuclease III [Azospirillum sp. B510]
Length = 264
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 31/136 (22%), Gaps = 24/136 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------------------WQKM 46
+ + +W + P V+ GD N
Sbjct: 129 DEMTRWLGTERTPDRPMVLVGDLNIAPLEQDVWSHKELLSVVSHTPVEVERLAAMQASAG 188
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS---DLDT 103
D + P E++ R K R + + D
Sbjct: 189 WIDAMRRFVPPEEKLYTWWSYRAKDWA-ASNRGRRLDHIWVTPPLEGALAGIKVLRDARG 247
Query: 104 RRSKLSTHCPLTIEYD 119
K S H P+ ++ D
Sbjct: 248 WDPKPSDHVPVIVDLD 263
>gi|193211783|ref|YP_001997736.1| exodeoxyribonuclease III [Chlorobaculum parvum NCIB 8327]
gi|193085260|gb|ACF10536.1| exodeoxyribonuclease III [Chlorobaculum parvum NCIB 8327]
Length = 253
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 21/130 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDG 50
LK++ I G ++AGD N + I + ++
Sbjct: 127 LKEYIASLIAEGQEVILAGDMNVALTEIDVHRSQNKPGATGLRPEERSAIEAHLELGLHD 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ +K+ K + + + + S K S
Sbjct: 187 IVRELNPDKKDLFTWWPNWK-FARERNLGWRIDCIYLSPALAGKVSGVSVDL--DEKSSD 243
Query: 111 HCPLTIEYDF 120
H P+++E F
Sbjct: 244 HAPVSVELAF 253
>gi|254506149|ref|ZP_05118293.1| exodeoxyribonuclease III [Vibrio parahaemolyticus 16]
gi|219550967|gb|EED27948.1| exodeoxyribonuclease III [Vibrio parahaemolyticus 16]
Length = 268
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 33/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q + L + + ++ GD N
Sbjct: 126 KRQFYKDLMTYLNDHHNNDEQLIVMGDINISPIDADIGIGEPNRKRWLKTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ Q + G + F Q R+K D + D + +
Sbjct: 186 QWLQTLLDWGFVDTFRQIHPDVNDRFSWFDYRSKGFPDNRGLRIDVVLATPKLAAKCIEA 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
D K S H P+ +
Sbjct: 246 DIDYELRGIEKPSDHAPIWSTF 267
>gi|160936797|ref|ZP_02084163.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC
BAA-613]
gi|158440289|gb|EDP18035.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC
BAA-613]
Length = 251
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 34/135 (25%), Gaps = 25/135 (18%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+W + +K++ P V GD N I + + +
Sbjct: 121 MKWEDDFLAYLKKLEENKPVVFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTDLLA 180
Query: 50 ----GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
F + + + R + D +VS +
Sbjct: 181 AGFVDTFRYFYPDLEGTYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSASIHNTVMG 240
Query: 105 RSKLSTHCPLTIEYD 119
S HCP+ + +
Sbjct: 241 ----SDHCPVELVIE 251
>gi|317495840|ref|ZP_07954203.1| endonuclease/Exonuclease/phosphatase [Gemella moribillum M424]
gi|316914017|gb|EFV35500.1| endonuclease/Exonuclease/phosphatase [Gemella moribillum M424]
Length = 696
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + + + + FV+ GDFN S ++ +
Sbjct: 514 EEAKILNAFIKEGLRQNPNLKFVLTGDFNDFEFSDSVKTIVGNELVNLMAEHDA---GDR 570
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD ++ ++ K+ ++ + I + + S H P+ ++ DF
Sbjct: 571 YSYFYRGSNQSLDNILVSKNIKDKVVFSPVHI----NASFMEEHGRASDHDPVVVQIDFS 626
Query: 122 K 122
K
Sbjct: 627 K 627
>gi|307566413|ref|ZP_07628850.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
gi|307344885|gb|EFN90285.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
Length = 249
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 25/118 (21%), Gaps = 22/118 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
+ P ++ GD N I + + E
Sbjct: 133 LDKHKPVIVCGDMNVAHEEIDLKNPKSNHFNAGFSDEEREKMTTLLSNGFTDTFRFLYPE 192
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + R K+ D S+ S HCP+ I
Sbjct: 193 QVTYSWWSYRFKAREKNIGWRIDYFLISDRLRESLEEAKIHTEILG----SDHCPVEI 246
>gi|258545109|ref|ZP_05705343.1| exodeoxyribonuclease III [Cardiobacterium hominis ATCC 15826]
gi|258519628|gb|EEV88487.1| exodeoxyribonuclease III [Cardiobacterium hominis ATCC 15826]
Length = 258
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/141 (11%), Positives = 32/141 (22%), Gaps = 28/141 (19%)
Query: 3 SQQGEW------LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
+Q + L W + + G ++ GD N + +
Sbjct: 118 ERQAKKEAFMAKLAPWLNARAAAGERLILCGDINIAHTEKDLKNWKGNLKNSGFLPQERA 177
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ E +R + + D + + + S
Sbjct: 178 WLTDLFAGEFRDAFRLVHPDAEQYTWWSQRGNARANNVGWRIDYHIISQNLAGQVESASV 237
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
S H PL + Y
Sbjct: 238 YT----DENFSDHAPLILTYR 254
>gi|298528123|ref|ZP_07015527.1| exodeoxyribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
gi|298511775|gb|EFI35677.1| exodeoxyribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
Length = 254
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 32/124 (25%), Gaps = 22/124 (17%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRF 55
Q ++ P V+ GDFN I + + F
Sbjct: 134 AQDLRRKKPIVVCGDFNTAHKDIDLKNPRANEDRSGFLPVERQWLDKFIDHGYVDTFRMF 193
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
QE + R + F + Q+ + S HCP+
Sbjct: 194 NQEGGNYTWWTYRFGARSRNAGW--RIDYFFVSEELRSN--VQNAWIEPQVMGSDHCPVG 249
Query: 116 IEYD 119
++ +
Sbjct: 250 LKLN 253
>gi|51473856|ref|YP_067613.1| exonuclease III [Rickettsia typhi str. Wilmington]
gi|51460168|gb|AAU04131.1| E.coli exonuclease III [Rickettsia typhi str. Wilmington]
Length = 270
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 26/126 (20%), Gaps = 18/126 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD--GLL 52
+ K +I GDFN I ++ L
Sbjct: 133 NYLSTKKSCYEKTIIGGDFNIAPFDIDVYSSKVLTETTCCTKVEQKKLRTILNSGFEDLY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
K+ R + D + + + K S H
Sbjct: 193 RLMHPNKQEFSWWDYRAGCFEKNKGMRIDMILGCNNTIDYLEKCYMDYNFRTQKKPSDHI 252
Query: 113 PLTIEY 118
P+ +
Sbjct: 253 PIIANF 258
>gi|84686218|ref|ZP_01014113.1| possible Endonuclease/Exonuclease/phosphatase fa [Maritimibacter
alkaliphilus HTCC2654]
gi|84665745|gb|EAQ12220.1| possible Endonuclease/Exonuclease/phosphatase fa [Rhodobacterales
bacterium HTCC2654]
Length = 343
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 26/142 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TDDFW 43
Q WL++ + + G ++ GDFN D
Sbjct: 202 QCIWLRQRVNDHLDAGDSLIVMGDFNDGPGLDEYEKLFGRSGIEIVLGEAGQTELYDPHA 261
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSYDQ 98
+ + + + + ++ LDY ++ D + V Y
Sbjct: 262 RLAVSRRVGAMPVTARFWIHSEKRYLQALLDYIMVSPDLLASKPDWRIWHPFDDPVCYRT 321
Query: 99 SDLDTRRSKLSTHCPLTIEYDF 120
+L S H P++I+ D
Sbjct: 322 IELREALLTASDHFPVSIDIDL 343
>gi|260770527|ref|ZP_05879460.1| hypothetical protein VFA_003594 [Vibrio furnissii CIP 102972]
gi|260615865|gb|EEX41051.1| hypothetical protein VFA_003594 [Vibrio furnissii CIP 102972]
Length = 264
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 4/122 (3%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L QG+ L W Q+ +VI GDFN + GD ++ +
Sbjct: 144 LLTQGKALNAWIKQREAKQQAYVILGDFNHNLAYRGDWLWQTMTQGTLIEPTLASRQTPA 203
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---SKLSTHCPLTIEY 118
TC V R + + + + +I + + Q + +++ LS HCPL E
Sbjct: 204 TCKVRSRQQPNQLHQFRSL-IDHIIISPTLKASATQQVNFESQDVLRYALSDHCPLRSEL 262
Query: 119 DF 120
+
Sbjct: 263 QW 264
>gi|332971495|gb|EGK10445.1| exodeoxyribonuclease III [Kingella kingae ATCC 23330]
Length = 257
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 40/143 (27%), Gaps = 29/143 (20%)
Query: 3 SQQG---EWLKKW---ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK----------- 45
+Q ++L + + G V+ GD+N +I +
Sbjct: 117 ERQAYKYQFLDAFYPILADLLAEGRDVVVCGDWNIAHQNIDIKNWKGNLKNSGFLPEERE 176
Query: 46 --------MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + + + R ++ ++ +
Sbjct: 177 WIGNVIAKLGWTDMWRKLYPDVAGYTWWSNRGQAYAKDVGW--RIDYQMVSPELAAK--A 232
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
QS + K S H PL ++YD+
Sbjct: 233 QSAHVYKDEKFSDHAPLVVDYDY 255
>gi|315181613|gb|ADT88526.1| Metal-dependent hydrolase [Vibrio furnissii NCTC 11218]
Length = 264
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 4/122 (3%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L QG+ L W Q+ +VI GDFN + GD ++ +
Sbjct: 144 LLTQGKALNAWIKQRESKQQAYVILGDFNHNLAYRGDWLWQTMTQGTLIEPTLASRQTPA 203
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---SKLSTHCPLTIEY 118
TC V R + + + + ++ + Q + +++ LS HCPL E
Sbjct: 204 TCKVRSRQQPNQLHQFRSL-IDHIIVSPTLKASDTQQVNFESQDVLRYALSDHCPLRSEL 262
Query: 119 DF 120
+
Sbjct: 263 QW 264
>gi|329895423|ref|ZP_08271004.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
gi|328922306|gb|EGG29652.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
Length = 256
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 27/129 (20%), Gaps = 24/129 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDG 50
+ ++ P V+ GD N I +
Sbjct: 131 ADYLKT-LEQTKPVVVCGDLNVAHQDIDLARPKQNYNKSAGYMQAEIDGFDRLVDLGFVD 189
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F R + D + + S+ + S
Sbjct: 190 TYRHFNPNTAKYSWWSYRAGAREKNIGWRIDYFLVTPELTSSLTGAEI----YNDVYGSD 245
Query: 111 HCPLTIEYD 119
HCP+ I+
Sbjct: 246 HCPVGIDIS 254
>gi|268608445|ref|ZP_06142172.1| exodeoxyribonuclease [Ruminococcus flavefaciens FD-1]
Length = 248
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 23/131 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ ++ + + + P + GD N N I + +
Sbjct: 123 DAMRGYLSE-LDKKKPVIYCGDLNVAHNEIDLKNPKSNVGNAGFSDEERGKFTELLAAGF 181
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
EK R K+ F++ + + +
Sbjct: 182 SDSYRSLYPEKIEYSWWSYRFKAREKNIGW--RIDYFVVSD--RFMPRVKDSQILTDVTG 237
Query: 109 STHCPLTIEYD 119
S HCP+ + +
Sbjct: 238 SDHCPVQLIIE 248
>gi|300771561|ref|ZP_07081436.1| exodeoxyribonuclease III [Sphingobacterium spiritivorum ATCC 33861]
gi|300761550|gb|EFK58371.1| exodeoxyribonuclease III [Sphingobacterium spiritivorum ATCC 33861]
Length = 255
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 33/128 (25%), Gaps = 22/128 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGL 51
++++D+ +K ++ GD+N +I + +
Sbjct: 131 QQYSDRLLKDIPNLIVCGDYNICHRAIDIHNPKSNANTSGFLPEEREWMENFINSGYVDS 190
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E R + ++ + + + S H
Sbjct: 191 FRHLNPEPHQYSWWSYRAGARARNLGW--RIDYNMVSAPLASQI--EKSYLLNDAVHSDH 246
Query: 112 CPLTIEYD 119
CP+ +E
Sbjct: 247 CPVVVEIS 254
>gi|197335145|ref|YP_002156399.1| exodeoxyribonuclease III [Vibrio fischeri MJ11]
gi|197316635|gb|ACH66082.1| exodeoxyribonuclease III [Vibrio fischeri MJ11]
Length = 268
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 14/142 (9%), Positives = 27/142 (19%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q + L ++ GD N
Sbjct: 126 KRQFYKDLMTHLHTHHTNDEEIIVMGDINISPIDADIGIGEPNAKRWLKTGKCSFQPEER 185
Query: 39 -TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + E + R+K +D + D +
Sbjct: 186 EWLQTLKDWGFEDTFRNLHPEVTDQFSWFDYRSKGFVDNRGLRIDVIMATPTLAVKCTES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRGIEKPSDHAPIWSTF 267
>gi|192361651|ref|YP_001982212.1| exonuclease III [Cellvibrio japonicus Ueda107]
gi|190687816|gb|ACE85494.1| exodeoxyribonuclease III [Cellvibrio japonicus Ueda107]
Length = 269
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 29/138 (21%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------------DDFW 43
L ++ ++ + ++ GD N I D
Sbjct: 132 LLQYLTEEYQPQQQLIVMGDMNISHQDIDIGIGEENRKRWLRTGKCSFLPEEREWLDKLL 191
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
D P E R+ D L N +
Sbjct: 192 AWGLQDTYRELNPDSNEKFSWFDYRSGGFEDNPKRGLRIDLILATNPLINKCIDTGIDYD 251
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S HCP+ +
Sbjct: 252 IRGMEKPSDHCPIWASFQ 269
>gi|59712190|ref|YP_204966.1| exonuclease III [Vibrio fischeri ES114]
gi|59480291|gb|AAW86078.1| exonuclease III [Vibrio fischeri ES114]
Length = 268
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 14/142 (9%), Positives = 27/142 (19%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q + L ++ GD N
Sbjct: 126 KRQFYKDLMTHLHTHHTNDEEIIVMGDINISPIDADIGIGEPNAKRWLKTGKCSFQPEER 185
Query: 39 -TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + E + R+K +D + D +
Sbjct: 186 EWLQTLKDWGFEDTFRNLHPEVTDQFSWFDYRSKGFVDNRGLRIDVIMATPTLAVKCTES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRGIEKPSDHAPIWSTF 267
>gi|114330706|ref|YP_746928.1| exodeoxyribonuclease III Xth [Nitrosomonas eutropha C91]
gi|114307720|gb|ABI58963.1| exodeoxyribonuclease III Xth [Nitrosomonas eutropha C91]
Length = 257
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 34/128 (26%), Gaps = 23/128 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLI 53
+ G ++ GD+N I + + ++ +
Sbjct: 133 LQSLAEGGREVLLCGDWNIAHKEIDLKNWRSNQKNSGFLPEERAWLSTVFDELKLVDVFR 192
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
E + R ++ + + + S T + S H P
Sbjct: 193 TINPEPDQYTWWSNRGQAWAKNVGW--RIDYQIATPGLASTATGASIYKT--ERFSDHAP 248
Query: 114 LTIEYDFE 121
L I+YDF
Sbjct: 249 LLIDYDFN 256
>gi|330953392|gb|EGH53652.1| exonuclease III [Pseudomonas syringae Cit 7]
Length = 270
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 28/144 (19%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ E L+ + P ++ GD N
Sbjct: 127 QRFYENLQTLLEGHFSNDQPLIVMGDVNISPQDCDIGIGADNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVS 95
+ + E + R++ D + I
Sbjct: 187 WMERLKNWGLVDSFRHLYPEVVDRFSWFDYRSRGFEDEPKRGLRIDLIMTSTGLQPRIKE 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 247 AGVDYDLRGMEKPSDHAPIWLELS 270
>gi|229168476|ref|ZP_04296199.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|228614882|gb|EEK71984.1| Exodeoxyribonuclease [Bacillus cereus AH621]
Length = 252
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 30/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ P + GD N + + + +P
Sbjct: 128 RAYIK-RLDEKKPVIFCGDLNVAHKEVDLKNPKSNRKNPGFSDEEREKFTCVLEAGFIDT 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + R + D I + S
Sbjct: 187 YRYLYPDQEGAYSWWSYRMGARAKNIGWRLDYFVISERLKHKITDAKINSEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|227535760|ref|ZP_03965809.1| exodeoxyribonuclease III [Sphingobacterium spiritivorum ATCC 33300]
gi|227244248|gb|EEI94263.1| exodeoxyribonuclease III [Sphingobacterium spiritivorum ATCC 33300]
Length = 255
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 33/128 (25%), Gaps = 22/128 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGL 51
++++D+ +K ++ GD+N +I + +
Sbjct: 131 QQYSDRLLKDIPNLIVCGDYNICHRAIDIHNPKSNANTSGFLPEEREWMENFINSGYVDS 190
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E R + ++ + + + S H
Sbjct: 191 FRHLNPEPHQYSWWSYRAGARARNLGW--RIDYNMVSAPLASQI--EKSYLLNDAVHSDH 246
Query: 112 CPLTIEYD 119
CP+ +E
Sbjct: 247 CPVVVEIS 254
>gi|146304199|ref|YP_001191515.1| exodeoxyribonuclease III Xth [Metallosphaera sedula DSM 5348]
gi|145702449|gb|ABP95591.1| exodeoxyribonuclease III Xth [Metallosphaera sedula DSM 5348]
Length = 248
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 29/131 (22%), Gaps = 25/131 (19%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ ++ G P VI GDFN I
Sbjct: 124 QRFHEFVKNL---GKPCVICGDFNVAHEEIDIARPKDNVNHAGFTPEERKWFHEFLASGF 180
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F +E R + ++ + +
Sbjct: 181 VDTFRIFVKEGGHYSWWSYRFHAREKNIGW--RIDYCVVSKELEKH--VKKAEILEKVMG 236
Query: 109 STHCPLTIEYD 119
S H P+T+E D
Sbjct: 237 SDHAPVTLELD 247
>gi|203287972|ref|YP_002222987.1| exodeoxyribonuclease III [Borrelia recurrentis A1]
gi|201085192|gb|ACH94766.1| exodeoxyribonuclease III [Borrelia recurrentis A1]
Length = 254
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 22/118 (18%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQEKE 60
+G ++ GDFN I ++ + F +E
Sbjct: 139 SGKNLIVCGDFNIAHTEIDLSNPKTSRESAGFYVEETNWMDNFLNRGYVDTFRMFNKEPG 198
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + ++ F+I+ +F + L + S HCP+ ++
Sbjct: 199 NYTWWDYKTRARERNVGW--RIDYFVINKAFQFK--VKDALILNKVMGSDHCPVFLKL 252
>gi|319426820|gb|ADV54894.1| exodeoxyribonuclease III [Shewanella putrefaciens 200]
Length = 270
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 28/137 (20%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L + I GD N +
Sbjct: 131 QDLMHYLQTNHSNDEDIAIIGDINISPTDLDIGIGEVNRKRWLKTGKCSFQPEEREWLKT 190
Query: 43 WQKMDPDGLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q + E+ R+K D + D + ++ D
Sbjct: 191 LQDWGLIDTFRQLHPERTERYSWFDYRSKGFDDNRGLRIDVILATPSLAARLIESDVDYD 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 251 LRGIDKPSDHAPIWSTF 267
>gi|7592805|dbj|BAA94392.1| orf0 [Actinobacillus actinomycetemcomitans]
Length = 264
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD-------------------------TDDFW 43
L+++ +Q P +I GD N + + +
Sbjct: 129 LQRYLEQDHNAQNPVIIMGDMNISPSDLDIGIGEENRKRWLRTGKCSFLPEEREWYQRLY 188
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
D P + R+K D + D+ V +
Sbjct: 189 AYGLEDTFRHMNPTVNDKFSWFDYRSKGFDDNRGLRIDHILANKALVAHCVDTGIALDIR 248
Query: 104 RRSKLSTHCPLTIEY 118
+K S H P+ E+
Sbjct: 249 AMNKPSDHAPIWAEF 263
>gi|114320344|ref|YP_742027.1| endonuclease/exonuclease/phosphatase [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226738|gb|ABI56537.1| Endonuclease/exonuclease/phosphatase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 575
Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 39/136 (28%), Gaps = 21/136 (15%)
Query: 2 LSQQGE------WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF 55
L +Q + + +W + +P +I GD N LL R
Sbjct: 442 LRRQAQSEALLEAIGRW-REDRADDLPVLIVGDVNAYGGEDPVRALLAG--GKRDLLARH 498
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------- 105
+ V + LD+ + + + ++ D+ L
Sbjct: 499 LPPERRYTYVFRGESGYLDHALAPPRLADRVQAAGTWAINADEPRLLEYDARGIERRFRP 558
Query: 106 --SKLSTHCPLTIEYD 119
+ S H P+ ++
Sbjct: 559 GPWRSSDHDPVWVDLR 574
>gi|229104299|ref|ZP_04234968.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|229117223|ref|ZP_04246601.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|228666123|gb|EEL21587.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|228678997|gb|EEL33205.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
Length = 252
Score = 64.1 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 33/130 (25%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DG 50
+ + Q + P V GD N I + + +P D
Sbjct: 128 RTYIKQ-LDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRILEEGFVDT 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+P ++ + R + D I + S
Sbjct: 187 YRHLYPNQEGAYSWWSYRMGARAKNIGWRLDYFVVSERIKGQITDAKINSEIMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|5545327|dbj|BAA82542.1| DNase [Actinobacillus actinomycetemcomitans]
Length = 278
Score = 64.1 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 42/135 (31%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKIN--SIGDTDDFWQKMDPDGLLIRFPQEKEST---- 62
L+++ +Q P +I GD N + IG ++ ++ G P+E+E
Sbjct: 143 LQRYLEQDHNAQNPVIIMGDMNISPSNLDIGIGEENRKRWLRTGKCSFLPEEREWYQRLY 202
Query: 63 -------------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R+K D + D+ V +
Sbjct: 203 AYGLEDTFRHMNPTVNDKFSWFDYRSKGFDDNRGLRIDHILANKALVAHCVDTGIALDIR 262
Query: 104 RRSKLSTHCPLTIEY 118
+K S H P+ E+
Sbjct: 263 AMNKPSDHAPIWAEF 277
>gi|295136350|ref|YP_003587026.1| exodeoxyribonuclease [Zunongwangia profunda SM-A87]
gi|294984365|gb|ADF54830.1| exodeoxyribonuclease [Zunongwangia profunda SM-A87]
Length = 253
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 33/132 (25%), Gaps = 22/132 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
+ +++ D + +I GD+N +I D + K
Sbjct: 126 MDDFQQYIDSLKQQIPNLIICGDYNICHEAIDIHDPVRLKNVSGFLPVEREWIDNFMKSG 185
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F E + R + + D +
Sbjct: 186 FIDSFRYFNDEPDQYSWWSYRANARANNKGWRIDYNLVAAPLQEKLKRAVILPEA----Y 241
Query: 108 LSTHCPLTIEYD 119
S HCP+ +E +
Sbjct: 242 HSDHCPILVELE 253
>gi|282159248|gb|ADA78639.1| exodeoxyribonuclease III [Francisella tularensis subsp. tularensis
NE061598]
Length = 258
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 22/132 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------------------WQKMDPD 49
K+ +++++G F++ GDFN I + + +
Sbjct: 128 KEILKEQVESGRDFIVCGDFNIVHKEIDIKNWKSNYGKTSGVLPEEQAWLDHIFDDLGWV 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
E R ++ + + ++ +SD + + S
Sbjct: 188 DTFRVINHEPLQYTWWSNRGQARANNVGW--RIDYHISTSALKDKVVPESDYVYKENWFS 245
Query: 110 THCPLTIEYDFE 121
H PLTI YD+E
Sbjct: 246 DHAPLTINYDYE 257
>gi|229098205|ref|ZP_04229152.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|228685103|gb|EEL39034.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
Length = 252
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 33/130 (25%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DG 50
+ + Q + P V GD N I + + +P D
Sbjct: 128 RTYIKQ-LDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRILEEGFVDT 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+P ++ + R + D I + S
Sbjct: 187 YRHLYPNQEGAYSWWSYRMGARAKNIGWRLDYFVVSERIKGQITDAKINSEIMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|254445623|ref|ZP_05059099.1| exodeoxyribonuclease III [Verrucomicrobiae bacterium DG1235]
gi|198259931|gb|EDY84239.1| exodeoxyribonuclease III [Verrucomicrobiae bacterium DG1235]
Length = 251
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 32/135 (23%), Gaps = 25/135 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------ 49
+Q EW + + + ++ P + GD N + + +
Sbjct: 121 RQ-EWDRDFLAYVKALEATKPVIFCGDLNVAHTEDDLANPKTNRKNAGFTDEERAGFDDI 179
Query: 50 ------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
F Q K R + D + S
Sbjct: 180 VAAGFVDTFREFTQGKGHYSWWSYRGGARSRNVGWRIDYFMISESLRPQLKSASILPEVL 239
Query: 104 RRSKLSTHCPLTIEY 118
S HCP+ + +
Sbjct: 240 G----SDHCPVEMVF 250
>gi|52141752|ref|YP_085078.1| exodeoxyribonuclease III [Bacillus cereus E33L]
gi|51975221|gb|AAU16771.1| exodeoxyribonuclease III [Bacillus cereus E33L]
Length = 252
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 30/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ P + GD N I + + +P
Sbjct: 128 RAYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDT 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + R + D I + S
Sbjct: 187 YRYLYPDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERIKNQIKDAKINSEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|254414082|ref|ZP_05027850.1| endonuclease/exonuclease/phosphatase family [Microcoleus
chthonoplastes PCC 7420]
gi|196179218|gb|EDX74214.1| endonuclease/exonuclease/phosphatase family [Microcoleus
chthonoplastes PCC 7420]
Length = 316
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 5/120 (4%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINS-IGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + L +W + +P + AGD+N + G D+ W + D + +K
Sbjct: 166 EQAQLLNEWGRSQ---ELPIIAAGDYNFDWDVVSGVHDEGWDFLTADDVFTWVKPDKLVA 222
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
R S LD+ + + KN+ S + S S H P+ + E+
Sbjct: 223 TLCSDRYDSVLDFVFVAGEAKNWSAS-SVILYSEPSDAYCPDDKTTSDHRPILATFQLEE 281
>gi|109898960|ref|YP_662215.1| exodeoxyribonuclease III [Pseudoalteromonas atlantica T6c]
gi|109701241|gb|ABG41161.1| Exodeoxyribonuclease III [Pseudoalteromonas atlantica T6c]
Length = 269
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 35/137 (25%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEK----- 59
E L + + ++ GD N + + ++ G P+E+
Sbjct: 131 EDLSTYLNTHHTPDDNVIVMGDVNISHTDLDIGIGEPNRKRWLQTGKCSFLPEERVWLND 190
Query: 60 ------------------ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
E R+K LD + D S+
Sbjct: 191 LIDWGFTDGFRTLNPETNEHFSWFDYRSKGFLDNRGLRIDLILATKKLHESLTDAGIDYE 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 251 LRGIEKPSDHAPIWAEF 267
>gi|169334284|ref|ZP_02861477.1| hypothetical protein ANASTE_00682 [Anaerofustis stercorihominis DSM
17244]
gi|169259001|gb|EDS72967.1| hypothetical protein ANASTE_00682 [Anaerofustis stercorihominis DSM
17244]
Length = 251
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 30/124 (24%), Gaps = 23/124 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
++ P ++ GD N I + K +
Sbjct: 132 ELDKVKPVIMCGDLNVAHREIDLKNPKTNKKNAGFTIEERDKMTSLLKRGFVDSYRYLYP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + R + + F++ + D S HCP+ +
Sbjct: 192 DIEGVYTWWSYRFNARKNNAGW--RIDYFIVSDRIKDKIKDVKIFS--DVMGSDHCPVLL 247
Query: 117 EYDF 120
+ +
Sbjct: 248 DIEL 251
>gi|84497619|ref|ZP_00996441.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Janibacter
sp. HTCC2649]
gi|84382507|gb|EAP98389.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Janibacter
sp. HTCC2649]
Length = 262
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 32/134 (23%), Gaps = 25/134 (18%)
Query: 11 KWADQK-------IKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDP 48
W +Q G PF + GD+N +Q +
Sbjct: 128 AWLEQLRVQTAAWAAEGQPFALMGDWNIAPQDEDVWSMDYYLDKSHVSPPERAAFQAVLD 187
Query: 49 DGLLIRFPQEKE---STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
G+ + + + + D + + + +
Sbjct: 188 AGVSDVVRPHTPEPGTFTYWDYQRLAFQKRRGMRIDFILASDPLAQRVRGAAIDREERKG 247
Query: 106 SKLSTHCPLTIEYD 119
S H P+ IE +
Sbjct: 248 KGASDHAPVVIEVE 261
>gi|319787682|ref|YP_004147157.1| exodeoxyribonuclease III Xth [Pseudoxanthomonas suwonensis 11-1]
gi|317466194|gb|ADV27926.1| exodeoxyribonuclease III Xth [Pseudoxanthomonas suwonensis 11-1]
Length = 267
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 29/134 (21%), Gaps = 18/134 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
L + + P V+ GDFN D + K+ G
Sbjct: 133 MARLARHVATLVDLPHPAVLMGDFNVIPTDEDVYDPKSWKRDALIQPEVREAYAKLLAQG 192
Query: 51 LLIRFPQ---EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ E+ + + D+ + + K
Sbjct: 193 WTDALREVYGEERVYTFWDYFRQHFERDRGLRIDHLLLNPALAPGLEEAGVDRWVRALEK 252
Query: 108 LSTHCPLTIEYDFE 121
S H P I
Sbjct: 253 PSDHAPTWIRVKLP 266
>gi|315223362|ref|ZP_07865221.1| exodeoxyribonuclease III [Capnocytophaga ochracea F0287]
gi|314946693|gb|EFS98682.1| exodeoxyribonuclease III [Capnocytophaga ochracea F0287]
Length = 254
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 31/128 (24%), Gaps = 22/128 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ D+ + VI GD+N +I D
Sbjct: 130 KKYIDKLKQKVPNLVICGDYNICHEAIDIHDPIRNANVSGFLPIEREWLDKFMKSGFIDS 189
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F +E R + + D + K S H
Sbjct: 190 FRYFHKEAHQYSWWSYRANARNNNKGWRIDYHLVSTPLENRMERALILPEA----KHSDH 245
Query: 112 CPLTIEYD 119
CP+ + +
Sbjct: 246 CPILLIIN 253
>gi|291441116|ref|ZP_06580506.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291344011|gb|EFE70967.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 331
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 26/118 (22%), Gaps = 6/118 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + +P V+ GDFN + D D + +
Sbjct: 218 ERAAALIADRVGG-LGRCVPVVVTGDFNVAAHENPVYDTLLGAGLVDTWEAAAERGEPYG 276
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R L+ ++ + S H P+
Sbjct: 277 TFHGYRPP-----VPGGPRIDWILVTPGVTVHRASVNTFAPAGRFPSDHLPVQAALTL 329
>gi|150024176|ref|YP_001295002.1| exodeoxyribonuclease III [Flavobacterium psychrophilum JIP02/86]
gi|149770717|emb|CAL42181.1| Exodeoxyribonuclease III [Flavobacterium psychrophilum JIP02/86]
Length = 253
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 35/132 (26%), Gaps = 22/132 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMD 47
+ + + + +I GD+N +I + + K
Sbjct: 126 MDDFQNYINNLKTKIPNLIICGDYNICHEAIDIHNPTQNAKTSGFLPEERAWLDAFIKSG 185
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +E R + + L+ + L +K
Sbjct: 186 FVDSFRHFNKEPHHYSWWSYRAGARGNNKGW--RIDYNLVSETLKERIKRAIILP--DAK 241
Query: 108 LSTHCPLTIEYD 119
S HCP+ +E +
Sbjct: 242 HSDHCPVLVEVE 253
>gi|294102589|ref|YP_003554447.1| exodeoxyribonuclease III [Aminobacterium colombiense DSM 12261]
gi|293617569|gb|ADE57723.1| exodeoxyribonuclease III [Aminobacterium colombiense DSM 12261]
Length = 261
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 14/138 (10%), Positives = 34/138 (24%), Gaps = 19/138 (13%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------ 45
+ + LK D++ + GD N I T+ ++
Sbjct: 124 RFFDRLKTLFDREYSKADDLLWVGDMNVAPTDIDVTNPGNKRDHVCFHEDIKKKFEEIKA 183
Query: 46 MDPDGLLIRFPQEKESTCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ ++ + R + D+ +
Sbjct: 184 WGFIDVFRKYRPGEGEFSFFDYRVKNALERNIGWRIDHILATSSLAHRSEDCYVDRGPRG 243
Query: 105 RSKLSTHCPLTIEYDFEK 122
K S H P+ ++ ++
Sbjct: 244 WEKPSDHAPVVGAFNIDE 261
>gi|224532103|ref|ZP_03672735.1| exodeoxyribonuclease III [Borrelia valaisiana VS116]
gi|224511568|gb|EEF81974.1| exodeoxyribonuclease III [Borrelia valaisiana VS116]
Length = 255
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 34/128 (26%), Gaps = 22/128 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------TDDFWQKMDPDG 50
++ D + G VI GDFN I D +
Sbjct: 127 IENLIDSLVNGGKNVVICGDFNIAHTEIDLISPDSNRDSPGYYIEETTWIDNFLNKGYVD 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +E R + F+++ F + L + S
Sbjct: 187 TFRIFNKEPGYYTWWNYRTGAREKNMGW--RIDYFVVNEFFKRN--VKKSLILDKVMGSD 242
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 243 HCPVFLEL 250
>gi|163854727|ref|YP_001629025.1| putative endonuclease [Bordetella petrii DSM 12804]
gi|163258455|emb|CAP40754.1| putative endonuclease [Bordetella petrii]
Length = 262
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 43/145 (29%), Gaps = 32/145 (22%)
Query: 3 SQQGE---------WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF----------- 42
QQ + WL + + KTG FVI GD+N I +
Sbjct: 119 RQQAKYRFLDVFGPWLDELMREHKKTGREFVICGDWNIAHKEIDLKNWKSNQKNSGFLPE 178
Query: 43 --------WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV 94
+ K + R + E R ++ D + +
Sbjct: 179 ERAWLTEVFDKRGFVDVFRRLDERPEQYTWWSNRGQAWAKNVGWRIDYQIATPGLAARAR 238
Query: 95 SYDQSDLDTRRSKLSTHCPLTIEYD 119
S + + S H PLTI+YD
Sbjct: 239 SASI----YKDERFSDHAPLTIDYD 259
>gi|148271654|ref|YP_001221215.1| putative exonuclease III [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829584|emb|CAN00499.1| putative exonuclease III [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 278
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 29/126 (23%), Gaps = 18/126 (14%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLI 53
+ W P + GD+N D F +D +
Sbjct: 142 RAWLAS--DPETPLALMGDWNVAPLDTDVWDPALFEGKTHTSEPERAAFAAFLDAGLTDV 199
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
P E + + D + S + + S H P
Sbjct: 200 VRPSIPEGYTYWDYQQLRFPRNEGMRIDFILGNDRFQELVGSPRIHRDERKGDGPSDHVP 259
Query: 114 LTIEYD 119
+ ++ D
Sbjct: 260 VAVDLD 265
>gi|58040181|ref|YP_192145.1| exodeoxyribonuclease III [Gluconobacter oxydans 621H]
gi|58002595|gb|AAW61489.1| Exodeoxyribonuclease III [Gluconobacter oxydans 621H]
Length = 275
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 31/129 (24%), Gaps = 18/129 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQ--KMDP 48
+ L A + PF GDFN F + M
Sbjct: 146 DALAARARVLLDAEKPFAFIGDFNVCPTDEDLAPGALSTDDALVRPETRAAFRRLEWMGL 205
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
L + + + D+ + + S+ + + K
Sbjct: 206 TDALRALQPTGRHYTFWDYQAAAFQRNSGLRIDHALLSPRLTERLKSFVIDRDERAKEKA 265
Query: 109 STHCPLTIE 117
S H P+ +
Sbjct: 266 SDHVPVLVT 274
>gi|15607568|ref|NP_214941.1| exodeoxyribonuclease III protein [Mycobacterium tuberculosis H37Rv]
gi|15839814|ref|NP_334851.1| exodeoxyribonuclease III [Mycobacterium tuberculosis CDC1551]
gi|31791605|ref|NP_854098.1| exodeoxyribonuclease III protein [Mycobacterium bovis AF2122/97]
gi|121636341|ref|YP_976564.1| putative exodeoxyribonuclease III protein xthA [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|148660192|ref|YP_001281715.1| exodeoxyribonuclease III [Mycobacterium tuberculosis H37Ra]
gi|148821623|ref|YP_001286377.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis F11]
gi|167970756|ref|ZP_02553033.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis H37Ra]
gi|215402179|ref|ZP_03414360.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis 02_1987]
gi|215409943|ref|ZP_03418751.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis 94_M4241A]
gi|215425649|ref|ZP_03423568.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis T92]
gi|215429249|ref|ZP_03427168.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis EAS054]
gi|215444523|ref|ZP_03431275.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis T85]
gi|218752060|ref|ZP_03530856.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis GM 1503]
gi|219556248|ref|ZP_03535324.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis T17]
gi|224988813|ref|YP_002643500.1| putative exodeoxyribonuclease III protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253797351|ref|YP_003030352.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
KZN 1435]
gi|254230777|ref|ZP_04924104.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis C]
gi|254363391|ref|ZP_04979437.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis str. Haarlem]
gi|254549374|ref|ZP_05139821.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260185294|ref|ZP_05762768.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
CPHL_A]
gi|260199425|ref|ZP_05766916.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
T46]
gi|260203577|ref|ZP_05771068.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
K85]
gi|289441807|ref|ZP_06431551.1| exodeoxyribonuclease III [Mycobacterium tuberculosis T46]
gi|289445967|ref|ZP_06435711.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
CPHL_A]
gi|289552676|ref|ZP_06441886.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
KZN 605]
gi|289568343|ref|ZP_06448570.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
T17]
gi|289573012|ref|ZP_06453239.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
K85]
gi|289744123|ref|ZP_06503501.1| exodeoxyribonuclease III protein [Mycobacterium tuberculosis
02_1987]
gi|289748911|ref|ZP_06508289.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
T92]
gi|289752456|ref|ZP_06511834.1| exodeoxyribonuclease III protein [Mycobacterium tuberculosis
EAS054]
gi|289756500|ref|ZP_06515878.1| exodeoxyribonuclease III protein [Mycobacterium tuberculosis T85]
gi|289760543|ref|ZP_06519921.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis GM 1503]
gi|294995932|ref|ZP_06801623.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
210]
gi|297632911|ref|ZP_06950691.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
KZN 4207]
gi|297729886|ref|ZP_06959004.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
KZN R506]
gi|298523904|ref|ZP_07011313.1| exodeoxyribonuclease III protein XthA [Mycobacterium tuberculosis
94_M4241A]
gi|306774523|ref|ZP_07412860.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu001]
gi|306779272|ref|ZP_07417609.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu002]
gi|306783061|ref|ZP_07421383.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu003]
gi|306787428|ref|ZP_07425750.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu004]
gi|306791980|ref|ZP_07430282.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu005]
gi|306796167|ref|ZP_07434469.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu006]
gi|306966432|ref|ZP_07479093.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu009]
gi|306970627|ref|ZP_07483288.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu010]
gi|307078353|ref|ZP_07487523.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu011]
gi|307082911|ref|ZP_07492024.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu012]
gi|313657215|ref|ZP_07814095.1| exodeoxyribonuclease III [Mycobacterium tuberculosis KZN V2475]
gi|1817693|emb|CAB06567.1| PROBABLE EXODEOXYRIBONUCLEASE III PROTEIN XTHA (EXONUCLEASE III)
(EXO III) (AP ENDONUCLEASE VI) [Mycobacterium
tuberculosis H37Rv]
gi|13879945|gb|AAK44665.1| exodeoxyribonuclease III [Mycobacterium tuberculosis CDC1551]
gi|31617191|emb|CAD93298.1| PROBABLE EXODEOXYRIBONUCLEASE III PROTEIN XTHA (EXONUCLEASE III)
(EXO III) (AP ENDONUCLEASE VI) [Mycobacterium bovis
AF2122/97]
gi|121491988|emb|CAL70451.1| Probable exodeoxyribonuclease III protein xthA [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|124599836|gb|EAY58846.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis C]
gi|134148905|gb|EBA40950.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis str. Haarlem]
gi|148504344|gb|ABQ72153.1| exodeoxyribonuclease III [Mycobacterium tuberculosis H37Ra]
gi|148720150|gb|ABR04775.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis F11]
gi|224771926|dbj|BAH24732.1| putative exodeoxyribonuclease III protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253318854|gb|ACT23457.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
KZN 1435]
gi|289414726|gb|EFD11966.1| exodeoxyribonuclease III [Mycobacterium tuberculosis T46]
gi|289418925|gb|EFD16126.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
CPHL_A]
gi|289437308|gb|EFD19801.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
KZN 605]
gi|289537443|gb|EFD42021.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
K85]
gi|289542096|gb|EFD45745.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
T17]
gi|289684651|gb|EFD52139.1| exodeoxyribonuclease III protein [Mycobacterium tuberculosis
02_1987]
gi|289689498|gb|EFD56927.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
T92]
gi|289693043|gb|EFD60472.1| exodeoxyribonuclease III protein [Mycobacterium tuberculosis
EAS054]
gi|289708049|gb|EFD72065.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis GM 1503]
gi|289712064|gb|EFD76076.1| exodeoxyribonuclease III protein [Mycobacterium tuberculosis T85]
gi|298493698|gb|EFI28992.1| exodeoxyribonuclease III protein XthA [Mycobacterium tuberculosis
94_M4241A]
gi|308216872|gb|EFO76271.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu001]
gi|308327716|gb|EFP16567.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu002]
gi|308332078|gb|EFP20929.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu003]
gi|308335893|gb|EFP24744.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu004]
gi|308339470|gb|EFP28321.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu005]
gi|308343335|gb|EFP32186.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu006]
gi|308355828|gb|EFP44679.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu009]
gi|308359748|gb|EFP48599.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu010]
gi|308363690|gb|EFP52541.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu011]
gi|308367342|gb|EFP56193.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu012]
gi|323721099|gb|EGB30161.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
CDC1551A]
gi|326902253|gb|EGE49186.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
W-148]
gi|328457137|gb|AEB02560.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
KZN 4207]
Length = 291
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 11/133 (8%), Positives = 28/133 (21%), Gaps = 24/133 (18%)
Query: 8 WLKK----WADQKIKTGIPFVIAGDFNRKINSIGDTD------------DFWQKMDP--- 48
L+ W + P + GD+N + +
Sbjct: 158 ALRDTAEGWL--RDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVSEPERKAFNAIVD 215
Query: 49 ---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
++ F + D + ++ + +
Sbjct: 216 AQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARVMDAQIVREERKG 275
Query: 106 SKLSTHCPLTIEY 118
S H P+ ++
Sbjct: 276 KAPSDHAPVLVDL 288
>gi|28897777|ref|NP_797382.1| exonuclease III [Vibrio parahaemolyticus RIMD 2210633]
gi|260363798|ref|ZP_05776553.1| exodeoxyribonuclease III [Vibrio parahaemolyticus K5030]
gi|260876941|ref|ZP_05889296.1| exodeoxyribonuclease III [Vibrio parahaemolyticus AN-5034]
gi|260897916|ref|ZP_05906412.1| exodeoxyribonuclease III [Vibrio parahaemolyticus Peru-466]
gi|28805990|dbj|BAC59266.1| exodeoxyribonuclease III [Vibrio parahaemolyticus RIMD 2210633]
gi|308085493|gb|EFO35188.1| exodeoxyribonuclease III [Vibrio parahaemolyticus Peru-466]
gi|308093887|gb|EFO43582.1| exodeoxyribonuclease III [Vibrio parahaemolyticus AN-5034]
gi|308113909|gb|EFO51449.1| exodeoxyribonuclease III [Vibrio parahaemolyticus K5030]
Length = 268
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 13/142 (9%), Positives = 29/142 (20%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q + L + + ++ GD N
Sbjct: 126 KRQFYKDLMTYLNDHHSNDEQLIVMGDINISPIDSDIGIGEPNRKRWLKTGKCSFQPEER 185
Query: 39 -TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + E + R++ D + D + +
Sbjct: 186 EWLKTLLDWGFEDTFRKLYPEVNDRFSWFDYRSRGFDDNRGLRIDVILATPSLAQKCIES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRGIEKPSDHAPIWSTF 267
>gi|323490286|ref|ZP_08095501.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
gi|323395956|gb|EGA88787.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
Length = 251
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 30/132 (22%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + + P ++ GD N I + K +
Sbjct: 124 EAILSFVKT-LDNHKPVLLCGDLNVAHEEIDLKNPKANKKNSGFTPEERSKMTQFLESGF 182
Query: 50 -GLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F E+ R+ D + +
Sbjct: 183 VDTFRYFYPEEEGHYSWWSYRSNCREKNVGWRIDYFLASQRLVPELQNAKIHKDIWG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ ++ +
Sbjct: 240 -SDHCPVELQIE 250
>gi|302383762|ref|YP_003819585.1| exodeoxyribonuclease III Xth [Brevundimonas subvibrioides ATCC
15264]
gi|302194390|gb|ADL01962.1| exodeoxyribonuclease III Xth [Brevundimonas subvibrioides ATCC
15264]
Length = 264
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 27/129 (20%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPD 49
L A + F + GD+N + +
Sbjct: 134 RLNAHARDLLANEEAFTLCGDYNVIPTPDDAKTPSAWVTDALFQPESRAAFRALKGLGLY 193
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
Q + + + I D + V + K S
Sbjct: 194 EAGELGNQPPGTYTFWDYQAGAWQRDHGIRIDFHLLSPQAADRFVGVETHRDARDMDKPS 253
Query: 110 THCPLTIEY 118
H P+ IE
Sbjct: 254 DHVPVVIEL 262
>gi|169827405|ref|YP_001697563.1| endonuclease yhcR [Lysinibacillus sphaericus C3-41]
gi|168991893|gb|ACA39433.1| Endonuclease yhcR precursor [Lysinibacillus sphaericus C3-41]
Length = 1379
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 45/122 (36%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + D+ + + F++AGD N + + +I E++
Sbjct: 1147 QLAQAINDFIDEGLAINPNLNFIVAGDMNDFEFTPALETLKGDVL---TNMIDKAPEQDR 1203
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N LD+ ++ + + + ++ + + S H P+ ++ D +
Sbjct: 1204 FTYFFQGNNQVLDHILVSNHLADVTEIDLIHM----NANFTEAQGRASDHDPVLVQIDLQ 1259
Query: 122 KG 123
G
Sbjct: 1260 AG 1261
>gi|261366200|ref|ZP_05979083.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
gi|282572018|gb|EFB77553.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
Length = 251
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 32/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
+ L+++ + P ++ GD N I +
Sbjct: 124 DDLRRYLQA-LDAQKPVILCGDLNVAHTEIDLKNPGPNRGAAGFSDQERGKLDELLAAGF 182
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D P R ++ D + I D
Sbjct: 183 TDTFRHLHPDATGIYSWWSMRFRARERNAGWRIDYFLVSNRLAPQIRKADILMDILG--- 239
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+E D
Sbjct: 240 -SDHCPVTLELDL 251
>gi|242277753|ref|YP_002989882.1| exodeoxyribonuclease III [Desulfovibrio salexigens DSM 2638]
gi|242120647|gb|ACS78343.1| exodeoxyribonuclease III [Desulfovibrio salexigens DSM 2638]
Length = 255
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 29/126 (23%), Gaps = 22/126 (17%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRF 55
++++ P V+ GDFN I + F
Sbjct: 134 AEELRKKKPIVVGGDFNTAHKEIDLKNPKANSERSGFLPIERAWLDKFIEHGYVDTFRMF 193
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
R + + F + ++ S HCP+
Sbjct: 194 DDSPGKYSWWSYRFNARKNNAGW--RIDYFFVSEELKHN--VKNAWIESDIMGSDHCPIG 249
Query: 116 IEYDFE 121
IE F
Sbjct: 250 IELSFP 255
>gi|187920658|ref|YP_001889690.1| exodeoxyribonuclease III Xth [Burkholderia phytofirmans PsJN]
gi|187719096|gb|ACD20319.1| exodeoxyribonuclease III Xth [Burkholderia phytofirmans PsJN]
Length = 270
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 34/128 (26%), Gaps = 18/128 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRF 55
+ A + K+ P V+AGDFN + +Q++ G
Sbjct: 133 EHAAKLYKSAHPVVLAGDFNVVPTDEDIYNPRSWLKDALLQPESRERYQRLLAQGWTDAL 192
Query: 56 PQ---EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
++ + + D+ D + + S H
Sbjct: 193 RTHFGDERVYTFWDYFRRHWETNSGLRIDHLLLSADLAPRLRDAGVDRWVRGEPHASDHA 252
Query: 113 PLTIEYDF 120
P +E +
Sbjct: 253 PTWVELEM 260
>gi|320533420|ref|ZP_08034105.1| putative exodeoxyribonuclease III [Actinomyces sp. oral taxon 171
str. F0337]
gi|320134357|gb|EFW26620.1| putative exodeoxyribonuclease III [Actinomyces sp. oral taxon 171
str. F0337]
Length = 269
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 35/133 (26%), Gaps = 17/133 (12%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKM 46
L + + W ++ + +P + GD+N D + +
Sbjct: 139 LRVLRDDVAAWLEE--EPDLPLALVGDWNVAPRDEDVWDMSVFEGATHVSSPEREAFAAF 196
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
G+ + + + + D + + + +
Sbjct: 197 AEAGMREVTRERVTNYTYWDYQKLRFPRNEGMRIDFVYASPALAGRVTGAAIDRDERKGK 256
Query: 107 KLSTHCPLTIEYD 119
S H P+ +E D
Sbjct: 257 GASDHVPVIVEVD 269
>gi|291286441|ref|YP_003503257.1| exodeoxyribonuclease III [Denitrovibrio acetiphilus DSM 12809]
gi|290883601|gb|ADD67301.1| exodeoxyribonuclease III [Denitrovibrio acetiphilus DSM 12809]
Length = 266
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 12/138 (8%), Positives = 26/138 (18%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L + + ++ GD N
Sbjct: 128 LLAYLNTSFSVDDNVLLVGDMNVAPTDYDIGISPDSVKRWLKQGKTSFLPEEREWIKNVA 187
Query: 45 KMDPDGLLIRFPQEKEST-CNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
+ + E + R+K + + + V
Sbjct: 188 DWGLTDVYRKIKPESDEFMSWFDYRSKGFERDPKSGLRIDHIMATEALADCCVDCGIDYE 247
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ ++
Sbjct: 248 IRGMEKPSDHAPVWADFQ 265
>gi|215409940|ref|ZP_03418748.1| exodeoxyribonuclease III protein xthA (exonuclease III)
[Mycobacterium tuberculosis 94_M4241A]
gi|298523903|ref|ZP_07011312.1| exodeoxyribonuclease III protein XthA [Mycobacterium tuberculosis
94_M4241A]
gi|298493697|gb|EFI28991.1| exodeoxyribonuclease III protein XthA [Mycobacterium tuberculosis
94_M4241A]
Length = 273
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 11/133 (8%), Positives = 28/133 (21%), Gaps = 24/133 (18%)
Query: 8 WLKK----WADQKIKTGIPFVIAGDFNRKINSIGDTD------------DFWQKMDP--- 48
L+ W + P + GD+N + +
Sbjct: 140 ALRDTAEGWL--RDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVSEPERKAFNAIVD 197
Query: 49 ---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
++ F + D + ++ + +
Sbjct: 198 AQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARVMDAQIVREERKG 257
Query: 106 SKLSTHCPLTIEY 118
S H P+ ++
Sbjct: 258 KAPSDHAPVLVDL 270
>gi|120553299|ref|YP_957650.1| endonuclease/exonuclease/phosphatase [Marinobacter aquaeolei VT8]
gi|120323148|gb|ABM17463.1| Endonuclease/exonuclease/phosphatase [Marinobacter aquaeolei VT8]
Length = 826
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + L W D +I GD N L+ +++
Sbjct: 632 QAAQALASWLADDATGTGEPDVLIIGDLNAYAQEDPIRALASAGYTD---LLATYVGEQA 688
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-----------------LDTR 104
V LD+ + + + D + ++ D+
Sbjct: 689 YSYVFYGQAGYLDHALANTALAGKIADTTVWPINADEPRALDYNTEFKTPEQQASFYAPD 748
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ + + +
Sbjct: 749 AYRASDHDPVIVALNLD 765
>gi|313637385|gb|EFS02862.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
Length = 251
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 34/132 (25%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P V+ GD N I + + +
Sbjct: 124 DAILAYVKK-LDETKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFTAFLEAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + +++ R + D ++V
Sbjct: 183 VDSFRYFYPDLEDAYSWWSYRMNARARNTGWRIDYFVVSERLKDNLVDAKIHPDVLG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ +E +
Sbjct: 240 -SDHCPVELELN 250
>gi|328473247|gb|EGF44095.1| exonuclease III [Vibrio parahaemolyticus 10329]
Length = 268
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 13/142 (9%), Positives = 29/142 (20%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q + L + + ++ GD N
Sbjct: 126 KRQFYKDLMTYLNDHHSNDEQLIVMGDINISPIDSDIGIGEPNRKRWLKTGKCSFQPEER 185
Query: 39 -TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + E + R++ D + D + +
Sbjct: 186 EWLKTLLDWGFEDTFRKLYPEVNDRFSWFDYRSRGFDDNRGLRIDVILATPSLAQKCIES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRGIEKPSDHAPIWSTF 267
>gi|295688833|ref|YP_003592526.1| exodeoxyribonuclease III Xth [Caulobacter segnis ATCC 21756]
gi|295430736|gb|ADG09908.1| exodeoxyribonuclease III Xth [Caulobacter segnis ATCC 21756]
Length = 262
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 31/132 (23%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
L A + VIAGD+N + + F +
Sbjct: 130 MRRLHAHAQNLLAFEENLVIAGDYNVIPEAQDVANPEAWLGDALFRPESRAAFRALKNLG 189
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ ++ + + L+ + + + + K
Sbjct: 190 LTDAYMQTDGAPGGYTFWDYQAGAWQRNLGIRIDHLLLSPQAADRLENVVIHRDERDKEK 249
Query: 108 LSTHCPLTIEYD 119
S H P+ +
Sbjct: 250 PSDHVPVVGHFR 261
>gi|154175230|ref|YP_001407411.1| exodeoxyribonuclease III [Campylobacter curvus 525.92]
gi|112802161|gb|EAT99505.1| exodeoxyribonuclease III [Campylobacter curvus 525.92]
Length = 252
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 28/129 (21%), Gaps = 23/129 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
+ D + G+ + GD N I +
Sbjct: 128 AYIDALVAQGLDVIFCGDVNTAHREIDLKNPKANAKTSGFLPIERAWLDEVVAHGFIDTF 187
Query: 53 IRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ + ++ R + D + D S H
Sbjct: 188 RQAHGDVADAYSWWSYRFNARAKNVGWRIDYFFISQSLKNRLKDAFILDNIGG----SDH 243
Query: 112 CPLTIEYDF 120
CP+ IE +
Sbjct: 244 CPVGIEIEL 252
>gi|332263793|ref|XP_003280936.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Nomascus
leucogenys]
gi|332263795|ref|XP_003280937.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Nomascus
leucogenys]
gi|332263797|ref|XP_003280938.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Nomascus
leucogenys]
gi|332263799|ref|XP_003280939.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Nomascus
leucogenys]
Length = 318
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 33/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E L+K+ + + P V+ GD N I + Q +
Sbjct: 190 EALRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 249 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|328782712|ref|XP_623551.2| PREDICTED: recombination repair protein 1 [Apis mellifera]
Length = 346
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 19/122 (15%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF-------WQKMDPDGLLIRFPQE--------- 58
+ + P +I GD N I + + + DG+
Sbjct: 226 RNLDEKKPVIICGDMNVAHKEIDLRNPKTNIKNAGFTIEERDGMTDFLATGFVDTFRALY 285
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
++ ++ I FL+ ++ + S HCP+ +
Sbjct: 286 PDKTDAYTFWSYFANARSKNIGWRLDYFLVSERIKDNVC--DNVIRDKVYGSDHCPIVLY 343
Query: 118 YD 119
+
Sbjct: 344 IN 345
>gi|241668560|ref|ZP_04756138.1| DNA-(apurinic or apyrimidinic site) lyase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254877094|ref|ZP_05249804.1| exodeoxyribonuclease III [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843115|gb|EET21529.1| exodeoxyribonuclease III [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 262
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 22/132 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------------------WQKMDPD 49
K+ ++ ++G F++ GDFN + + + +
Sbjct: 132 KEILKEQTESGRDFIVCGDFNIVHKEVDIKNWKSNYGKTSGVLPEEQAWLDHIFDDLGWV 191
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
E R ++ + + + +SD + + S
Sbjct: 192 DTFRVINHEPLQYTWWSNRGQARANNVGW--RIDYHISTPTLKDKVVPESDYVYKENWFS 249
Query: 110 THCPLTIEYDFE 121
H PLTI YD+E
Sbjct: 250 DHAPLTISYDYE 261
>gi|169631267|ref|YP_001704916.1| exodeoxyribonuclease III protein XthA [Mycobacterium abscessus ATCC
19977]
gi|169243234|emb|CAM64262.1| Probable exodeoxyribonuclease III protein XthA [Mycobacterium
abscessus]
Length = 266
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 14/134 (10%), Positives = 29/134 (21%), Gaps = 24/134 (17%)
Query: 8 WLKK----WADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDP 48
L+ W + GD+N + M+
Sbjct: 135 ALRDTAAGWLAD--APDQQVALVGDWNIAPTDDDIWSVEAYQGSTHVSEPERSAFTAMND 192
Query: 49 DGLLIR---FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
G F S + D + + + + + +
Sbjct: 193 AGFADVVRPFTPGPGVYTYWDYTQLSFPKKRGMRIDFVLGSPEFAKRVGNAHIDREERKG 252
Query: 106 SKLSTHCPLTIEYD 119
S H P+ ++ D
Sbjct: 253 KGASDHAPVVVDLD 266
>gi|90419377|ref|ZP_01227287.1| exodeoxyribonuclease III [Aurantimonas manganoxydans SI85-9A1]
gi|90336314|gb|EAS50055.1| exodeoxyribonuclease III [Aurantimonas manganoxydans SI85-9A1]
Length = 260
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 29/131 (22%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKIN----------------SIGDTDDFWQKMDPD 49
+ L A + V+AGD+N + + ++
Sbjct: 128 MQRLLAHARDSMAREELLVLAGDYNIIPERGDAARPDKWTGDALFQPESRAAYRRLINLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
++ + L+ + S K
Sbjct: 188 LSDAIRATTDADGTYSFWDYQAGAWQKNNGIRIDHLLLSPEAQDRMASAGIDRHVRGWEK 247
Query: 108 LSTHCPLTIEY 118
S H P+ +E
Sbjct: 248 PSDHVPVLVEL 258
>gi|15641862|ref|NP_231494.1| exonuclease III [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121587322|ref|ZP_01677094.1| exodeoxyribonuclease III [Vibrio cholerae 2740-80]
gi|147674047|ref|YP_001217394.1| exonuclease III [Vibrio cholerae O395]
gi|153820118|ref|ZP_01972785.1| exodeoxyribonuclease III [Vibrio cholerae NCTC 8457]
gi|227081989|ref|YP_002810540.1| exodeoxyribonuclease III [Vibrio cholerae M66-2]
gi|229508043|ref|ZP_04397548.1| exodeoxyribonuclease III [Vibrio cholerae BX 330286]
gi|229511718|ref|ZP_04401197.1| exodeoxyribonuclease III [Vibrio cholerae B33]
gi|229518856|ref|ZP_04408299.1| exodeoxyribonuclease III [Vibrio cholerae RC9]
gi|229607590|ref|YP_002878238.1| exonuclease III [Vibrio cholerae MJ-1236]
gi|254848946|ref|ZP_05238296.1| exonuclease III [Vibrio cholerae MO10]
gi|255745380|ref|ZP_05419329.1| exodeoxyribonuclease III [Vibrio cholera CIRS 101]
gi|262153517|ref|ZP_06028646.1| exodeoxyribonuclease III [Vibrio cholerae INDRE 91/1]
gi|262167417|ref|ZP_06035124.1| exodeoxyribonuclease III [Vibrio cholerae RC27]
gi|298498101|ref|ZP_07007908.1| exodeoxyribonuclease III [Vibrio cholerae MAK 757]
gi|9656389|gb|AAF95008.1| exodeoxyribonuclease III [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121548482|gb|EAX58540.1| exodeoxyribonuclease III [Vibrio cholerae 2740-80]
gi|126509336|gb|EAZ71930.1| exodeoxyribonuclease III [Vibrio cholerae NCTC 8457]
gi|146315930|gb|ABQ20469.1| exodeoxyribonuclease III [Vibrio cholerae O395]
gi|227009877|gb|ACP06089.1| exodeoxyribonuclease III [Vibrio cholerae M66-2]
gi|227013758|gb|ACP09968.1| exodeoxyribonuclease III [Vibrio cholerae O395]
gi|229343545|gb|EEO08520.1| exodeoxyribonuclease III [Vibrio cholerae RC9]
gi|229351683|gb|EEO16624.1| exodeoxyribonuclease III [Vibrio cholerae B33]
gi|229355548|gb|EEO20469.1| exodeoxyribonuclease III [Vibrio cholerae BX 330286]
gi|229370245|gb|ACQ60668.1| exodeoxyribonuclease III [Vibrio cholerae MJ-1236]
gi|254844651|gb|EET23065.1| exonuclease III [Vibrio cholerae MO10]
gi|255737210|gb|EET92606.1| exodeoxyribonuclease III [Vibrio cholera CIRS 101]
gi|262024114|gb|EEY42808.1| exodeoxyribonuclease III [Vibrio cholerae RC27]
gi|262030644|gb|EEY49279.1| exodeoxyribonuclease III [Vibrio cholerae INDRE 91/1]
gi|297542434|gb|EFH78484.1| exodeoxyribonuclease III [Vibrio cholerae MAK 757]
Length = 268
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 34/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q L + + V+ GD N +
Sbjct: 126 KRQFYRDLMTYLREHRSNSERLVVMGDINISPLDLDIGIGEANRKRWLQTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ Q + GL+ F Q R++ D + D + +
Sbjct: 186 EWLQTLLDWGLVDTFRQLHPDVSDQFSWFDYRSRGFEDNRGLRIDVILATPTLAETCQEA 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRAIDKPSDHAPIWTTF 267
>gi|33519889|ref|NP_878721.1| exonuclease III [Candidatus Blochmannia floridanus]
gi|33504234|emb|CAD83497.1| exodeoxyribonuclease III [Candidatus Blochmannia floridanus]
Length = 267
Score = 64.1 bits (154), Expect = 6e-09, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 33/145 (22%), Gaps = 26/145 (17%)
Query: 1 MLSQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------- 39
+ +Q + L+ + + +I GD N +
Sbjct: 122 LFKRQFFQNLQHYIENTYNNQSILLIMGDLNISPTDLDVGISEQNKKRWIKSGKCSFLPE 181
Query: 40 -----DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV 94
+ D P + + + D +
Sbjct: 182 ERSWIHSLMKWGLIDIYRKNNPYNNKRYSWFSYKYDGFHKNKGLRIDLILVTQPLENLYI 241
Query: 95 SYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D S S H P+ +++D
Sbjct: 242 NGDISYDIRGMPNSSDHAPIWVDFD 266
>gi|229515240|ref|ZP_04404700.1| exodeoxyribonuclease III [Vibrio cholerae TMA 21]
gi|229520320|ref|ZP_04409746.1| exodeoxyribonuclease III [Vibrio cholerae TM 11079-80]
gi|229342686|gb|EEO07678.1| exodeoxyribonuclease III [Vibrio cholerae TM 11079-80]
gi|229347945|gb|EEO12904.1| exodeoxyribonuclease III [Vibrio cholerae TMA 21]
Length = 268
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 34/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q L + + V+ GD N +
Sbjct: 126 KRQFYRDLMTYLCEHRSNSERLVVMGDINISPLDLDIGIGEANRKRWLQTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ Q + GL+ F Q R++ D + D + +
Sbjct: 186 EWLQTLLDWGLVDTFRQLHPDVSDQFSWFDYRSRGFEDNRGLRIDVILATPTLAETCQEA 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRAIDKPSDHAPIWATF 267
>gi|33152736|ref|NP_874089.1| exonuclease III [Haemophilus ducreyi 35000HP]
gi|1388153|gb|AAB49625.1| exonuclease III [Haemophilus ducreyi]
gi|33148960|gb|AAP96478.1| exodeoxyribonuclease III [Haemophilus ducreyi 35000HP]
Length = 267
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 31/135 (22%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------------DDFW 43
L+ + + + P +I GD N + D +
Sbjct: 132 LQHYLETALTAYNPIIIMGDMNICSTDLDIGIGEANRKRWLREGKCSFLPEEREWLDRLY 191
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
D P + R+K D + D + V
Sbjct: 192 HYGLVDTFRAMHPTTTDQFSWFDYRSKGFNDNRGLRIDLILASTTLANHCVETGIDLEIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 252 AMEKPSDHAPIWAVF 266
>gi|83858693|ref|ZP_00952215.1| hypothetical protein OA2633_04301 [Oceanicaulis alexandrii
HTCC2633]
gi|83853516|gb|EAP91368.1| hypothetical protein OA2633_04301 [Oceanicaulis alexandrii
HTCC2633]
Length = 263
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 35/133 (26%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ LK A + P ++AGD+N D F + +
Sbjct: 131 MKRLKAHARSLLAFEEPVILAGDYNLIPRDSDVHDAAAWEGDALIRPESRDAFAKILWLG 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ + ++ + L+ + + + + + K
Sbjct: 191 YSEAFMQADGRAHQYTFWDYQAGAWQKNNGIRIDHLLLSPQAADRLKAVEIAKDVRGKEK 250
Query: 108 LSTHCPLTIEYDF 120
S H P +D
Sbjct: 251 ASDHVPFVGVFDL 263
>gi|308375155|ref|ZP_07442904.2| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu007]
gi|308376392|ref|ZP_07438692.2| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu008]
gi|308347245|gb|EFP36096.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu007]
gi|308351175|gb|EFP40026.1| exodeoxyribonuclease III protein xthA [Mycobacterium tuberculosis
SUMu008]
Length = 273
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 11/133 (8%), Positives = 28/133 (21%), Gaps = 24/133 (18%)
Query: 8 WLKK----WADQKIKTGIPFVIAGDFNRKINSIGDTD------------DFWQKMDP--- 48
L+ W + P + GD+N + +
Sbjct: 140 ALRDTAEGWL--RDDPAAPIALMGDWNIAPTDDDVWSTEFFAGCTHVSEPERKAFNAIVD 197
Query: 49 ---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
++ F + D + ++ + +
Sbjct: 198 AQFTDVVRPFTPGPGVYTYWDYTQLRFPKKQGMRIDFILGSPALAARVMDAQIVREERKG 257
Query: 106 SKLSTHCPLTIEY 118
S H P+ ++
Sbjct: 258 KAPSDHAPVLVDL 270
>gi|229164042|ref|ZP_04291979.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus R309803]
gi|228619425|gb|EEK76314.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus R309803]
Length = 342
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ + G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 216 IRKQQAEYLKEYMNKHYQNGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKGFTD 275
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 276 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 332
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 333 NPVSAVFKLK 342
>gi|192292098|ref|YP_001992703.1| exodeoxyribonuclease III Xth [Rhodopseudomonas palustris TIE-1]
gi|192285847|gb|ACF02228.1| exodeoxyribonuclease III Xth [Rhodopseudomonas palustris TIE-1]
Length = 256
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGL 51
+ L + A +K+G P V+AGDFN + + G
Sbjct: 126 KRLNRHAATLLKSGAPVVLAGDFNVVPTPADIYPGKSWDKDALVQPEPRKLFAALLRQGW 185
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
E + D+ + + +
Sbjct: 186 TDALRHSHPEDAPYTFWSYWRNRFERDAGLRIDHLLLDPSLAARLKRAGVDRKVRAAPEA 245
Query: 109 STHCPLTIEYD 119
S H P + +
Sbjct: 246 SDHAPAWVVIE 256
>gi|323135771|ref|ZP_08070854.1| exodeoxyribonuclease III [Methylocystis sp. ATCC 49242]
gi|322398862|gb|EFY01381.1| exodeoxyribonuclease III [Methylocystis sp. ATCC 49242]
Length = 269
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMD 47
E L + A ++ ++AGD+N + D +
Sbjct: 137 MEALTRHAADLLRLEEVTILAGDYNVIPEARDVHDPAAWIGDALFMPQSRAALQRVINLG 196
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
L E + + + D+ + + + K
Sbjct: 197 YTDALRAVTDEPGLYTFWDYQAGAWQKNRGLRIDHLLLSPRAADRLAGVEIHKSMRAGEK 256
Query: 108 LSTHCPLTIEY 118
S H ++ E
Sbjct: 257 PSDHVAISAEL 267
>gi|296395160|ref|YP_003660044.1| exodeoxyribonuclease III Xth [Segniliparus rotundus DSM 44985]
gi|296182307|gb|ADG99213.1| exodeoxyribonuclease III Xth [Segniliparus rotundus DSM 44985]
Length = 267
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 30/129 (23%), Gaps = 21/129 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------------------FWQKMDPDG 50
++ +I GD+N + + F
Sbjct: 137 EYLKPLAHAKRDVLICGDWNIAHTELDIKNWKGNLKASGFLPHERAWIGEVFADGSGWTD 196
Query: 51 LLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ F + R ++ + D + V + + S
Sbjct: 197 VQRAFHPGEAGPYSWWSYRGQAFDNDAGWRIDYHVANKPLAARAVKAVTQRAEHYELRWS 256
Query: 110 THCPLTIEY 118
H P+ +EY
Sbjct: 257 DHAPIVVEY 265
>gi|121602003|ref|YP_988961.1| exodeoxyribonuclease III [Bartonella bacilliformis KC583]
gi|121602536|ref|YP_988991.1| exodeoxyribonuclease III [Bartonella bacilliformis KC583]
gi|120614180|gb|ABM44781.1| exodeoxyribonuclease III [Bartonella bacilliformis KC583]
gi|120614713|gb|ABM45314.1| exodeoxyribonuclease III [Bartonella bacilliformis KC583]
Length = 263
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 17/133 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
E L A + P ++AGD+N + +Q++ G
Sbjct: 128 MERLYTHAKSLLTYEEPLILAGDYNVIPTLSDAKNPQEWKHDALFLLQTRQAFQRIIHLG 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS-FSIVSYDQSDLDTRRSK-L 108
E ++ + +FL+ + + S + R K
Sbjct: 188 FYDALRSVTEDPSFSFWNFQAGAWFKNNGIRIDHFLLSSEAIDQLICAYSQTEVRGYKNP 247
Query: 109 STHCPLTIEYDFE 121
S H P+ IE D+
Sbjct: 248 SDHTPVWIELDYN 260
>gi|320532068|ref|ZP_08032952.1| putative exodeoxyribonuclease III [Actinomyces sp. oral taxon 171
str. F0337]
gi|320135713|gb|EFW27777.1| putative exodeoxyribonuclease III [Actinomyces sp. oral taxon 171
str. F0337]
Length = 277
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 33/132 (25%), Gaps = 21/132 (15%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------------FWQKM 46
+ G ++AGD N + + F
Sbjct: 145 RMADLLAAARDGGPQVLMAGDLNVVRSERDIKNWKPNHNKIAGVMDEEIAHLEGWFASGW 204
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ +E+ +R K+ + D + + S S
Sbjct: 205 VDASRHLVGDEEQGPYTWWSQRGKAFDNNAGWRIDYQVLTPALAERARSVTVDRAPDYAS 264
Query: 107 KLSTHCPLTIEY 118
+ S H PL +EY
Sbjct: 265 RWSDHAPLVVEY 276
>gi|256820874|ref|YP_003142153.1| Endonuclease/exonuclease/phosphatase [Capnocytophaga ochracea DSM
7271]
gi|256582457|gb|ACU93592.1| Endonuclease/exonuclease/phosphatase [Capnocytophaga ochracea DSM
7271]
Length = 274
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 8/118 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + + + + I G ++ GDFN Q D +
Sbjct: 165 QSADLVLQKIKE-IAKGGKVILMGDFNLPTEHPAVQKIASQLYDTQLSPTNKTPNMGTF- 222
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + S + Y + S H P+ +E +
Sbjct: 223 ------NAFKTDEPLKGHIDFIFVQKSIKVKQYKIIETRIDGLYPSDHLPVWVELQLK 274
>gi|329913211|ref|ZP_08275907.1| hypothetical protein IMCC9480_1123 [Oxalobacteraceae bacterium
IMCC9480]
gi|327545407|gb|EGF30623.1| hypothetical protein IMCC9480_1123 [Oxalobacteraceae bacterium
IMCC9480]
Length = 611
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 39/134 (29%), Gaps = 18/134 (13%)
Query: 3 SQQGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
S+Q L +W D + ++ GDFN ++ D L P E+
Sbjct: 478 SRQAGALLQWVDTLVARSGDGDVLMLGDFNAYLDEDPIRTIEAAG-HADLLRRLPPAER- 535
Query: 61 STCNVIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYD-----QSDLDTRRSK 107
V +LD+ R + +++ Y+ +
Sbjct: 536 -YSYVFAGMAGALDHGFASRTLAPHVSGVTIWHANADEPAVLDYNTESKPDDRYAATPWR 594
Query: 108 LSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 595 ASDHDPVLVGLTLP 608
>gi|149180849|ref|ZP_01859351.1| exodeoxyribonuclease [Bacillus sp. SG-1]
gi|148851368|gb|EDL65516.1| exodeoxyribonuclease [Bacillus sp. SG-1]
Length = 253
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 37/134 (27%), Gaps = 22/134 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E ++ + + + P + GD N N I + +
Sbjct: 124 ERVRAYIKE-LDEIKPVIYCGDLNVAHNEIDLRNPKSNHGNSGFTTEEREKMSTLLNEGF 182
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
E + S + I F++ + + +
Sbjct: 183 VDSFRHLYPE-KDQSYTWWSYMSKVRERNIGWRIDYFIVSD--RLKDSLKDAGMHTDVLG 239
Query: 109 STHCPLTIEYDFEK 122
S HCP+ IE DF+K
Sbjct: 240 SDHCPVYIEIDFKK 253
>gi|110638457|ref|YP_678666.1| exodeoxyribonuclease III (exonuclease III) [Cytophaga hutchinsonii
ATCC 33406]
gi|110281138|gb|ABG59324.1| exodeoxyribonuclease III (exonuclease III) [Cytophaga hutchinsonii
ATCC 33406]
Length = 255
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ L A I+ +P + GDFN + ++K+ G
Sbjct: 126 KRLTAHAADLIEADMPIALIGDFNVMPTDLDVYKPESWIDDALFRPEVRAAFKKLMKQGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ +++ + + D+ + + K
Sbjct: 186 TDAIRKLHPDEKIYTFWDYFRNAYGRNAGLRIDHFLLSPPLAAKLKKAGVDKHVRGWEKS 245
Query: 109 STHCPLTI 116
S H P I
Sbjct: 246 SDHAPTWI 253
>gi|126650018|ref|ZP_01722251.1| endonuclease/exonuclease/phosphatase family protein [Bacillus sp.
B14905]
gi|126593190|gb|EAZ87152.1| endonuclease/exonuclease/phosphatase family protein [Bacillus sp.
B14905]
Length = 1275
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 44/122 (36%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + D+ + I ++AGD N + + ++ E +
Sbjct: 1043 QLAQAINDFIDEGLAINPDINIIVAGDMNDFEFTPALETLKGDVL---TNMVDKAPETDR 1099
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N LD+ ++ + N + I ++ + + S H P+ ++ D +
Sbjct: 1100 FTYFFQGNNQVLDHILVSNNLANVTAIDLIHI----NANFTEAQGRASDHDPVLVQIDLK 1155
Query: 122 KG 123
G
Sbjct: 1156 AG 1157
>gi|229018928|ref|ZP_04175771.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|229025172|ref|ZP_04181596.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|228736105|gb|EEL86676.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|228742371|gb|EEL92528.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
Length = 252
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 30/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ P + GD N I + + +P
Sbjct: 128 RAYIK-RLDKKKPVIFCGDLNVSHKEIDLKNPKSNRKNPGFSDEEREKFTKILEEGFVDT 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
E + + R + D I + S
Sbjct: 187 YRFLYPEQEGAYSWWSYRMGARAKNIGWRLDYFVTSERLKHKITDAKINSEIMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + DF
Sbjct: 243 HCPVELHMDF 252
>gi|170780681|ref|YP_001709013.1| putative exonuclease [Clavibacter michiganensis subsp. sepedonicus]
gi|169155249|emb|CAQ00350.1| putative exonuclease [Clavibacter michiganensis subsp. sepedonicus]
Length = 278
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 31/134 (23%), Gaps = 18/134 (13%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQK 45
L + W P + GD+N D F
Sbjct: 134 LQALAADTRAWLAA--DPATPLALMGDWNVAPLDTDVWDPALFEGKTHTSEPERAAFAAF 191
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+D + P E + + D S + + + +
Sbjct: 192 LDAGLADVVRPSIPEGYTYWDYQQLRFPRNEGMRIDFILGNDRFSELVGAPRIHRDERKG 251
Query: 106 SKLSTHCPLTIEYD 119
S H P+ ++ D
Sbjct: 252 DGPSDHVPVAVDLD 265
>gi|15893514|ref|NP_346863.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|15023055|gb|AAK78203.1|AE007535_5 Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|325507632|gb|ADZ19268.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
Length = 250
Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 29/126 (23%), Gaps = 24/126 (19%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + + P ++ GD N I + +
Sbjct: 127 RNYLKA-LDEKKPVIVCGDMNVAHTEIDLKNPKTNTKNAGFSPEERSKFTELLEAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + R K+ D +VS D S
Sbjct: 186 YRYFYPDKEGIYSWWSYRFKAREKNAGWRIDYFCTSERLKDKLVSADIHTEVMG----SD 241
Query: 111 HCPLTI 116
HCP+ +
Sbjct: 242 HCPVEL 247
>gi|126668281|ref|ZP_01739241.1| exonuclease III [Marinobacter sp. ELB17]
gi|126627307|gb|EAZ97944.1| exonuclease III [Marinobacter sp. ELB17]
Length = 270
Score = 63.7 bits (153), Expect = 7e-09, Method: Composition-based stats.
Identities = 14/139 (10%), Positives = 28/139 (20%), Gaps = 27/139 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQKM 46
L + D+ V+ GD N +
Sbjct: 132 LMSYLDELKLRNTKVVVMGDVNISPTDKDIGIGADNAKRWLRSGKCSFLPEERQWLGEVE 191
Query: 47 DPDGLLIRFP---QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
+ E ++ R+K + ++ S S
Sbjct: 192 SRGYTDVFRHLHPHEADTFSWFDYRSKGFDREPKRGLRIDLIMASDNLLSQAKSAGVSYD 251
Query: 102 DTRRSKLSTHCPLTIEYDF 120
+ S H P+ +
Sbjct: 252 VRAMDRPSDHAPVWARFTL 270
>gi|327402657|ref|YP_004343495.1| exodeoxyribonuclease III Xth [Fluviicola taffensis DSM 16823]
gi|327318165|gb|AEA42657.1| exodeoxyribonuclease III Xth [Fluviicola taffensis DSM 16823]
Length = 254
Score = 63.7 bits (153), Expect = 7e-09, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 27/125 (21%), Gaps = 23/125 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLIRF 55
+ ++ P V+ GDFN +I +
Sbjct: 134 KNLEAKKPVVVCGDFNVAHKAIDLARPKANYNKSAGFMQEEIDGMDAFTANGLVDSWRAK 193
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
++ R + D I + S HCP+
Sbjct: 194 NGDEVKYTWWSYRGGAREKNVGWRIDYFLVSEGFVPKIKEATIHNEIFG----SDHCPVG 249
Query: 116 IEYDF 120
+E
Sbjct: 250 VELSL 254
>gi|332703871|ref|ZP_08423959.1| exodeoxyribonuclease III [Desulfovibrio africanus str. Walvis Bay]
gi|332554020|gb|EGJ51064.1| exodeoxyribonuclease III [Desulfovibrio africanus str. Walvis Bay]
Length = 254
Score = 63.7 bits (153), Expect = 7e-09, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 25/122 (20%), Gaps = 22/122 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLIRFPQ 57
+++ P V+ GDFN I F
Sbjct: 136 ELRKHKPVVVCGDFNTAHKEIDLAHPAANAHTSGFLPEERQWLDRFVAAGFVDTFRLFEP 195
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
K+ F + + S HCP+ +E
Sbjct: 196 GGGHYTWWSYFTKARERNVGW--RIDYFFVSEELRG--AVKRAWIEPGVPGSDHCPVGLE 251
Query: 118 YD 119
D
Sbjct: 252 LD 253
>gi|228940815|ref|ZP_04103375.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228973735|ref|ZP_04134313.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228980291|ref|ZP_04140602.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|228779396|gb|EEM27652.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|228785981|gb|EEM33982.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228818829|gb|EEM64894.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|326941450|gb|AEA17346.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 252
Score = 63.7 bits (153), Expect = 7e-09, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DG 50
+ + ++ P + GD N I + + +P D
Sbjct: 128 RSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFVDT 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+P ++ + R + D I + S
Sbjct: 187 YRYLYPNQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|261365939|ref|ZP_05978822.1| exodeoxyribonuclease III [Neisseria mucosa ATCC 25996]
gi|288565482|gb|EFC87042.1| exodeoxyribonuclease III [Neisseria mucosa ATCC 25996]
Length = 259
Score = 63.7 bits (153), Expect = 7e-09, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 35/127 (27%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKAEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHTLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ D + + + VS + K S H P
Sbjct: 194 TLYPDNPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAVKAVSAHV----YKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|166030570|ref|ZP_02233399.1| hypothetical protein DORFOR_00233 [Dorea formicigenerans ATCC
27755]
gi|166029572|gb|EDR48329.1| hypothetical protein DORFOR_00233 [Dorea formicigenerans ATCC
27755]
Length = 250
Score = 63.7 bits (153), Expect = 7e-09, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 28/123 (22%), Gaps = 23/123 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+K++ P + GD N I + + + F
Sbjct: 131 KKLEETKPVIFCGDLNVAHTEIDLKNPKTNRKNAGFTDEERQKFTELLNAGFVDTFRYFY 190
Query: 57 QE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
E R + F + S + S HCP+
Sbjct: 191 PEQTGIYSWWSYRFSARAKNAGW--RIDYFCVSESLK--DRLEDAKILTDIMGSDHCPVE 246
Query: 116 IEY 118
++
Sbjct: 247 LDI 249
>gi|124010283|ref|ZP_01694936.1| exodeoxyribonuclease III [Microscilla marina ATCC 23134]
gi|123983668|gb|EAY24108.1| exodeoxyribonuclease III [Microscilla marina ATCC 23134]
Length = 259
Score = 63.7 bits (153), Expect = 7e-09, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 22/130 (16%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPD 49
+++ + K +I GD+N +I + + ++
Sbjct: 134 AFQQYITELKKVVPHLIICGDYNIAHQAIDIHNPKSNAKRSGFLPEERNWLTDFMELGFT 193
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
E + R + D + + ++ S
Sbjct: 194 DSFRYLNPEPHNYTWWNVRTNARAKNLGWRIDYQMISKSLNENLKRAVILSEA----MHS 249
Query: 110 THCPLTIEYD 119
HCP+ IE D
Sbjct: 250 DHCPILIEVD 259
>gi|320010283|gb|ADW05133.1| exodeoxyribonuclease III Xth [Streptomyces flavogriseus ATCC 33331]
Length = 271
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 20/131 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------- 48
L+ + G V+ GD+N + + +
Sbjct: 140 LQGLKARAAAGGREVVVCGDWNIAHREADLKNWKSNRKNSGFLPEEREWLTRVFDEAAYV 199
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
D + P+++ R ++ + D + + T +
Sbjct: 200 DVVRALHPEQEGPYSWWSYRGRAFDNDAGWRIDYQVATPGLAGRAAKAWVERAATHGERW 259
Query: 109 STHCPLTIEYD 119
S H P+T+ Y+
Sbjct: 260 SDHAPVTVTYE 270
>gi|257069696|ref|YP_003155951.1| Exodeoxyribonuclease III [Brachybacterium faecium DSM 4810]
gi|256560514|gb|ACU86361.1| Exodeoxyribonuclease III [Brachybacterium faecium DSM 4810]
Length = 266
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 13/134 (9%), Positives = 30/134 (22%), Gaps = 20/134 (14%)
Query: 7 EWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTD---------------DFWQKMDPD 49
E L+ +++ + GDFN D ++ +
Sbjct: 133 EALRAEGARELAEDLSAKVALVGDFNVAPLDEDVWDMEFFDGKTHVSEPERAAFRAVVDA 192
Query: 50 GLLIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
G + + D ++ + +
Sbjct: 193 GYADVVRGDHPGPGVYTYWDYQQLRFPKRQGMRIDFVLGSPSVQSAVTGSFIDREERKGK 252
Query: 107 KLSTHCPLTIEYDF 120
S H P+ ++ D
Sbjct: 253 GASDHAPVVVDLDL 266
>gi|256820279|ref|YP_003141558.1| exodeoxyribonuclease III Xth [Capnocytophaga ochracea DSM 7271]
gi|256581862|gb|ACU92997.1| exodeoxyribonuclease III Xth [Capnocytophaga ochracea DSM 7271]
Length = 254
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 30/125 (24%), Gaps = 22/125 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ D+ + VI GD+N +I D
Sbjct: 130 KKYIDKLKQKVPNLVICGDYNICHEAIDIHDPIRNANVSGFLPIEREWLDKFMKSGFIDS 189
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F +E R + + D + K S H
Sbjct: 190 FRYFHKEAHQYSWWSYRANARNNNKGWRIDYHLVSAPLENRMERALILPEA----KHSDH 245
Query: 112 CPLTI 116
CP+ +
Sbjct: 246 CPILL 250
>gi|82701358|ref|YP_410924.1| exodeoxyribonuclease III [Nitrosospira multiformis ATCC 25196]
gi|82409423|gb|ABB73532.1| exodeoxyribonuclease III [Nitrosospira multiformis ATCC 25196]
Length = 259
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 23/128 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLI 53
++ G ++ GD+N I + +Q++ +
Sbjct: 133 LEKLAACGSEIILCGDWNIAHKEIDLRNWRSNQKNSGFLPQERAWLTDVFQELGFVDVFR 192
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
R E + R ++ + + + S T + S H P
Sbjct: 193 RINPEPDQYTWWSNRGQAWAKNVGW--RIDYQIATPGIAGKANAVSIYKT--ERFSDHSP 248
Query: 114 LTIEYDFE 121
L I+YD+
Sbjct: 249 LIIDYDYS 256
>gi|326798804|ref|YP_004316623.1| exodeoxyribonuclease III Xth [Sphingobacterium sp. 21]
gi|326549568|gb|ADZ77953.1| exodeoxyribonuclease III Xth [Sphingobacterium sp. 21]
Length = 255
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 30/128 (23%), Gaps = 22/128 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
++++D+ + VI+GD+N +I +
Sbjct: 131 RRYSDKLLTEFPSLVISGDYNICHRAIDIHNPKSNANSSGFLPEERAWMESFINSGYIDT 190
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E R + D I S H
Sbjct: 191 FRHLHPEPHQYTWWSYRANARAKNLGWRIDYNMASRALEGRIKQAAILTDAL----HSDH 246
Query: 112 CPLTIEYD 119
CP+ +E D
Sbjct: 247 CPVFLELD 254
>gi|170721841|ref|YP_001749529.1| exodeoxyribonuclease III Xth [Pseudomonas putida W619]
gi|169759844|gb|ACA73160.1| exodeoxyribonuclease III Xth [Pseudomonas putida W619]
Length = 260
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 35/128 (27%), Gaps = 18/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLL- 52
L K A + +G P V+AGDFN + +Q + G
Sbjct: 131 LVKHAHDLLGSGHPTVLAGDFNVVPTDFDIYNPKSWLKDALLQPESRNCYQALLEQGWTD 190
Query: 53 --IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ ++ + D+ D + + + K S
Sbjct: 191 AIRQLYPDERIYTFWDYFRNHWARNAGLRIDHLLLSPDIASHLKAGGVDAWVRNEPKPSD 250
Query: 111 HCPLTIEY 118
H P IE
Sbjct: 251 HAPAWIEL 258
>gi|325919422|ref|ZP_08181448.1| Exodeoxyribonuclease III [Xanthomonas gardneri ATCC 19865]
gi|325550088|gb|EGD20916.1| Exodeoxyribonuclease III [Xanthomonas gardneri ATCC 19865]
Length = 326
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 28/129 (21%), Gaps = 18/129 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ L + A ++ P + GDFN D + + G
Sbjct: 131 QRLIRHAKTLVELPHPVALIGDFNVVPTDADIYDPKGWRKDALLQPESRQAYAALLQQGW 190
Query: 52 LI---RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + D+ + + K
Sbjct: 191 TDSLLAVHGDTPIYTFWDYFRQHFARDRGLRIDHLLLNCTLAPGLQDAGVDKWVRALEKA 250
Query: 109 STHCPLTIE 117
S H P I
Sbjct: 251 SDHAPTWIS 259
>gi|222475141|ref|YP_002563557.1| exodeoxyribonuclease III (xthA2) [Anaplasma marginale str. Florida]
gi|222419278|gb|ACM49301.1| exodeoxyribonuclease III (xthA2) [Anaplasma marginale str. Florida]
Length = 315
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 25/115 (21%), Gaps = 18/115 (15%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLIRFPQEKESTCN 64
VI GD+N + I D + + K+
Sbjct: 198 LVIGGDYNVAPDDIDVYDAQALDGKLCFHPKERAGLREILHLGFTDAFRILHEGKQEFSW 257
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R S + D+ + +V S H P+
Sbjct: 258 WNYREGSWQRNRGMRIDHLLLSPNAVDKLVECSILSSVRGLESPSDHAPVMCVLR 312
>gi|228995361|ref|ZP_04155046.1| Endonuclease/exonuclease/phosphatase [Bacillus pseudomycoides DSM
12442]
gi|228764403|gb|EEM13266.1| Endonuclease/exonuclease/phosphatase [Bacillus pseudomycoides DSM
12442]
Length = 354
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G V+ GD+N+ ++ + D +++ P+ L+ +
Sbjct: 228 IRKQQVEFLKEYMNKHYKNGDYLVLGGDWNQLLSDVQLKDPKFKEEWPEWLVQLPEDFTD 287
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
KS ++ FL+ + IVS DL S H
Sbjct: 288 GGFQWAVDDTVWTVRDNVKSYVEDENFVTIIDGFLVSPNVEIVSVQGHDLKFEN---SDH 344
Query: 112 CPLTIEYDFE 121
P+ +
Sbjct: 345 NPVNAVLKLK 354
>gi|262382996|ref|ZP_06076133.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262295874|gb|EEY83805.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 280
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 4/106 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+KI P + GDFN +S + D I +
Sbjct: 179 KKIAGDSPAICVGDFNGTPDSEPIQILKSDGLLLDSREISKTPPYGTVGTT----NQFNL 234
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + Y + S H P+ IE +F
Sbjct: 235 NAPMKNRIDYIFVTKNIHVNKYGTLNEFQYGHYPSDHFPIMIEAEF 280
>gi|326202355|ref|ZP_08192224.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325987473|gb|EGD48300.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 253
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 37/131 (28%), Gaps = 24/131 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIR 54
+++ Q ++ P +I GD N I + + ++ G +
Sbjct: 128 REYLKQ-LEQTKPVIICGDMNVAHQEIDLKNPRSNKRSAGFTMEEREKFSQLLEHGFVDT 186
Query: 55 FPQ----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + KS F + + ++ + S
Sbjct: 187 FRMLYPDKTGAYTWWSYMFKSREKNAGW--RIDYFCVSGALK--DRIEAAEIYSDTMGSD 242
Query: 111 HCPLTIEYDFE 121
HCP+ + E
Sbjct: 243 HCPVGLTIKCE 253
>gi|229111211|ref|ZP_04240765.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|229146311|ref|ZP_04274682.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|296504242|ref|YP_003665942.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|228636944|gb|EEK93403.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|228672205|gb|EEL27495.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|296325294|gb|ADH08222.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
Length = 252
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DG 50
+ + ++ P + GD N I + + +P D
Sbjct: 128 RSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRENPGFSDEEREKFSCILEEGFIDT 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+P ++ + R + D I + S
Sbjct: 187 YRYLYPNQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|312890448|ref|ZP_07749985.1| exodeoxyribonuclease III Xth [Mucilaginibacter paludis DSM 18603]
gi|311297218|gb|EFQ74350.1| exodeoxyribonuclease III Xth [Mucilaginibacter paludis DSM 18603]
Length = 255
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 29/128 (22%), Gaps = 22/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
++ ++ VI+GD+N I +
Sbjct: 132 EYINKLKWAYPNLVISGDYNICHRPIDIHNPKSNANSSGFLPAEREWMENLIESGFVDTF 191
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+E + R S D I + S HC
Sbjct: 192 RYLNKEPHNYTWWSFRANSRAKNLGWRIDYNMATQPLQPLIKRAAILSEA----RHSDHC 247
Query: 113 PLTIEYDF 120
P+ +E D
Sbjct: 248 PVLLELDL 255
>gi|290959716|ref|YP_003490898.1| exodeoxyribonuclease III [Streptomyces scabiei 87.22]
gi|260649242|emb|CBG72356.1| putative exodeoxyribonuclease III [Streptomyces scabiei 87.22]
Length = 267
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 32/132 (24%), Gaps = 22/132 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
LK ++ G V+ GD+N + + +
Sbjct: 134 LKDLRERAAADGREVVVCGDWNIAHQQADLKNWRANQKNSGFLPEEREWLGRVLDEGDGG 193
Query: 50 --GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
++ E + R ++ D + V +
Sbjct: 194 YVDVVRALHPEVEGPYSWWSYRGRAFERDTGWRIDLAVATPGLASKAVKAFVERAASHDE 253
Query: 107 KLSTHCPLTIEY 118
+ S H P+T+
Sbjct: 254 RWSDHAPVTVVL 265
>gi|254228998|ref|ZP_04922419.1| exodeoxyribonuclease III [Vibrio sp. Ex25]
gi|262394738|ref|YP_003286592.1| exodeoxyribonuclease III [Vibrio sp. Ex25]
gi|151938466|gb|EDN57303.1| exodeoxyribonuclease III [Vibrio sp. Ex25]
gi|262338332|gb|ACY52127.1| exodeoxyribonuclease III [Vibrio sp. Ex25]
Length = 268
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 16/142 (11%), Positives = 35/142 (24%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEK 59
+Q + L + + + ++ GD N + ++ G P+E+
Sbjct: 126 KRQFYKDLMTYLNDHHNSDEQLIVMGDINISPIDADIGIGEPNRKRWLKTGKCSFQPEER 185
Query: 60 ES-----------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
E R++ D + D + +
Sbjct: 186 EWLKTLLDWGFEDTFRKLYPEVNDQFSWFDYRSRGFDDNRGLRIDVILATPSLAQKCIDS 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRGIEKPSDHAPIWSTF 267
>gi|304396123|ref|ZP_07378005.1| exodeoxyribonuclease III [Pantoea sp. aB]
gi|304356492|gb|EFM20857.1| exodeoxyribonuclease III [Pantoea sp. aB]
Length = 272
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 32/139 (23%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
L++ + P +I GD N + + +
Sbjct: 134 RDLQRLLTDDLPADKPVLIMGDMNISSTDLDIGIGEDNRKRWLRTGKCSFLPEEREWMDR 193
Query: 45 KMDPDGLLIRFPQEK---ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + + R+K D + D + + V
Sbjct: 194 LLSWGLVDTWRVHNPEVADRFSWFDYRSKGFDDNRGLRIDLVLVSKNLASHCVETGIDYA 253
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ + F
Sbjct: 254 IRSMEKPSDHAPIWSTFRF 272
>gi|301307705|ref|ZP_07213662.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
gi|300834379|gb|EFK64992.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
Length = 280
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 4/106 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+KI P + GDFN +S + D I +
Sbjct: 179 KKIAGDSPAICVGDFNGTPDSEPIQILKSDGLLLDSREISKTPPYGTVGTT----NQFNL 234
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + Y + S H P+ IE +F
Sbjct: 235 NAPMKNRIDYIFVTKNIHVNKYGTLNEFQYGHYPSDHFPIMIEAEF 280
>gi|228959948|ref|ZP_04121613.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|228799691|gb|EEM46643.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
Length = 252
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DG 50
+ + ++ P + GD N I + + +P D
Sbjct: 128 RSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFSCILEEGFIDT 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+P ++ + R + D I + S
Sbjct: 187 YRYLYPNQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|91225244|ref|ZP_01260412.1| exodeoxyribonuclease III [Vibrio alginolyticus 12G01]
gi|91189883|gb|EAS76155.1| exodeoxyribonuclease III [Vibrio alginolyticus 12G01]
Length = 268
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 14/142 (9%), Positives = 33/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q + L + + ++ GD N
Sbjct: 126 KRQFYKDLMTYLNDHHNNDEQLIVMGDINISPIDADIGIGEPNRKRWLKTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ + + G + F + R++ D + D + +
Sbjct: 186 EWLKTLLDWGFVDTFRKLYPEVNDQFSWFDYRSRGFDDNRGLRIDVILATPSLAEKCIES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRGIEKPSDHAPIWSTF 267
>gi|50955808|ref|YP_063096.1| exodeoxyribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50952290|gb|AAT89991.1| exodeoxyribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 280
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 30/126 (23%), Gaps = 19/126 (15%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-----------------FWQKMDPDGLL 52
+ W + +P + GD+N D F +
Sbjct: 142 RSWLAE--DPELPLALMGDWNVAPLDSDVGDPSLIPGVSTHISPPERAAFAAFEQAGLID 199
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ P E + + D + +V + + S H
Sbjct: 200 VVRPIVPEGYTYWDYKQLRFPRNEGMRIDFVLGSRAFADRVVDASIHRAERKGDAPSDHV 259
Query: 113 PLTIEY 118
P+ +E
Sbjct: 260 PVLVEL 265
>gi|282855240|ref|ZP_06264572.1| exodeoxyribonuclease III [Propionibacterium acnes J139]
gi|282581828|gb|EFB87213.1| exodeoxyribonuclease III [Propionibacterium acnes J139]
gi|314924052|gb|EFS87883.1| exodeoxyribonuclease III [Propionibacterium acnes HL001PA1]
gi|314965024|gb|EFT09123.1| exodeoxyribonuclease III [Propionibacterium acnes HL082PA2]
gi|314983099|gb|EFT27191.1| exodeoxyribonuclease III [Propionibacterium acnes HL110PA3]
gi|315090643|gb|EFT62619.1| exodeoxyribonuclease III [Propionibacterium acnes HL110PA4]
gi|315093843|gb|EFT65819.1| exodeoxyribonuclease III [Propionibacterium acnes HL060PA1]
gi|327326466|gb|EGE68255.1| exodeoxyribonuclease III [Propionibacterium acnes HL103PA1]
Length = 297
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 20/132 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + + G F++ GDFN + + + +
Sbjct: 166 LVRRRQECTAQGRHFLVMGDFNIAHENADLKNWKANQHNEGFLPEERQWFDTILSPDTLI 225
Query: 50 GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + R K+ ++ D + + ++ + + +
Sbjct: 226 DVVRAQHPDTNGPYSWWSWRGKAFVNDAGWRIDYHLASPELASKAITSEIDRDPSYSERT 285
Query: 109 STHCPLTIEYDF 120
S H + I+YD
Sbjct: 286 SDHAAVVIDYDL 297
>gi|269967644|ref|ZP_06181694.1| exodeoxyribonuclease III [Vibrio alginolyticus 40B]
gi|269827731|gb|EEZ82015.1| exodeoxyribonuclease III [Vibrio alginolyticus 40B]
Length = 268
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 14/142 (9%), Positives = 33/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q + L + + ++ GD N
Sbjct: 126 KRQFYKDLMTYLNDHHNNDEQLIVMGDINISPIDADIGIGEPNRKRWLKTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ + + G + F + R++ D + D + +
Sbjct: 186 EWLKALLDWGFVDTFRKLYPEVNDQFSWFDYRSRGFDDNRGLRIDVILATPSLAEKCIES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRGIEKPSDHAPIWSTF 267
>gi|239932761|ref|ZP_04689714.1| hypothetical protein SghaA1_31348 [Streptomyces ghanaensis ATCC
14672]
Length = 302
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 26/118 (22%), Gaps = 6/118 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + +P V+ GDFN + D D + +
Sbjct: 189 ERAAALIADRVGG-LGRCVPVVVTGDFNVAAHENPVYDTLLGAGLVDTWEAAAERGEPYG 247
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R L+ ++ + S H P+
Sbjct: 248 TFHGYRPP-----VPGGPRIDWILVTPGVTVHRASVNTFAPAGRFPSDHLPVQAALTL 300
>gi|315224062|ref|ZP_07865903.1| endonuclease/exonuclease/phosphatase [Capnocytophaga ochracea
F0287]
gi|314946033|gb|EFS98041.1| endonuclease/exonuclease/phosphatase [Capnocytophaga ochracea
F0287]
Length = 274
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 8/118 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + + + + I G ++ GDFN Q D +
Sbjct: 165 QSADLVLQKIKE-IAKGGKVILMGDFNLPTEHPAVQKIASQLYDTQLSPTNKTPNMGTF- 222
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + S + Y + S H P+ +E +
Sbjct: 223 ------NAFKTDEPLKGHIDFIFVQKSIKVKQYKIIETRIDGLYPSDHLPVWVELQLK 274
>gi|255326144|ref|ZP_05367231.1| exodeoxyribonuclease III [Rothia mucilaginosa ATCC 25296]
gi|255296855|gb|EET76185.1| exodeoxyribonuclease III [Rothia mucilaginosa ATCC 25296]
Length = 288
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 33/133 (24%), Gaps = 20/133 (15%)
Query: 6 GEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDD------------------FWQK 45
E L++ ++ + GD+N D F
Sbjct: 154 MEALRQNVHNELADNPQSQLALVGDWNVAPEDADVWDIDYFLRNEMTHVSAPERRAFAAL 213
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
++ + + P + + D + F + + ++
Sbjct: 214 LEEGMVDVVRPHTPGEYTYWDYQAGRFTKDEGMRIDFQLFSPALAARVERAWIDKVERAG 273
Query: 106 SKLSTHCPLTIEY 118
S H P+ +E
Sbjct: 274 EGASDHTPVVVEI 286
>gi|256827574|ref|YP_003151533.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
gi|256583717|gb|ACU94851.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
Length = 262
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 34/127 (26%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRF-- 55
P ++ GDFN I + + K+ G + F
Sbjct: 140 LGPDTAQPKPVIMCGDFNVAHEEIDLKNPKSNRGNAGFSDEEREKFTKLLDAGFVDTFRL 199
Query: 56 --PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
P E + R + + D + + + S HCP
Sbjct: 200 LNPTEVGAYSWWSYRFNARANNAGWRIDYFLVSKSLADRVRAARIH----ADLFGSDHCP 255
Query: 114 LTIEYDF 120
++++ D
Sbjct: 256 VSLDIDL 262
>gi|212704397|ref|ZP_03312525.1| hypothetical protein DESPIG_02452 [Desulfovibrio piger ATCC 29098]
gi|212672118|gb|EEB32601.1| hypothetical protein DESPIG_02452 [Desulfovibrio piger ATCC 29098]
Length = 269
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 31/125 (24%), Gaps = 23/125 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGLLIRF 55
++ + P V+ GDFN +I + M
Sbjct: 148 AEECRKSKPIVVCGDFNIAHKAIDLARPKQNEKNTGFLPEERAFLDRFTAMGYVDTFRHV 207
Query: 56 PQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ + + ++ F + Y + S HCP+
Sbjct: 208 HGDVEGRYSWWSYKMRAREKNVGW--RIDYFFVSEELK--PYIRDAWIEDDVYGSDHCPV 263
Query: 115 TIEYD 119
+E D
Sbjct: 264 GLELD 268
>gi|104781211|ref|YP_607709.1| exonuclease III [Pseudomonas entomophila L48]
gi|95110198|emb|CAK14905.1| exonuclease III [Pseudomonas entomophila L48]
Length = 270
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 14/138 (10%), Positives = 30/138 (21%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ + + + G P ++ GD N + +
Sbjct: 133 LQALLEGQFQNGQPVLVMGDMNISPQDCDIGIGADNAKRWLKTGKCSFLPEEREWMERLK 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
E + R++ D + + +
Sbjct: 193 GWGLVDSFRHLNPEVADRFSWFDYRSRGFEDEPKRGLRIDLIMASQGLLPRLKAAGVDYE 252
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 253 LRGMEKPSDHAPIWLELS 270
>gi|315104061|gb|EFT76037.1| exodeoxyribonuclease III [Propionibacterium acnes HL050PA2]
Length = 297
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 38/132 (28%), Gaps = 20/132 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + + G F++ GDFN + + + +
Sbjct: 166 LVRRRQECTAQGRHFLVMGDFNIAHENADLKNWKANQHNEGFLPEERQWFDTILSPDTLI 225
Query: 50 GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + R K+ ++ D + + ++ + + +
Sbjct: 226 DVVRAQHPDTNGPYSWWSWRGKAFVNDAGWRIDYHLASPELASKAITSEIDRDPSYSERT 285
Query: 109 STHCPLTIEYDF 120
S H + I+YD
Sbjct: 286 SDHAAVVIDYDL 297
>gi|269960966|ref|ZP_06175335.1| exodeoxyribonuclease III [Vibrio harveyi 1DA3]
gi|269834185|gb|EEZ88275.1| exodeoxyribonuclease III [Vibrio harveyi 1DA3]
Length = 268
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 14/142 (9%), Positives = 29/142 (20%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q + L + + ++ GD N
Sbjct: 126 KRQFYKDLMTYLNNHHSNDEQLIVMGDINISPIDADIGIGEPNRKRWLKTGKCSFQPEER 185
Query: 39 -TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ E + R++ D + D + +
Sbjct: 186 EWLQTLLDWGFEDTFRNLHPEVDDRFSWFDYRSRGFDDNRGLRIDVILATPSLAKKCIES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
D K S H P+ +
Sbjct: 246 DIDYELRGIEKPSDHAPIWSTF 267
>gi|187735459|ref|YP_001877571.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
gi|187425511|gb|ACD04790.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
Length = 253
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 30/131 (22%), Gaps = 24/131 (18%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------- 48
+++ + P V GD N I +
Sbjct: 127 AFREYVAG-LAETKPVVFCGDLNVAHEEIDIARPKENRFSAGFSDQERAGFTLLLEAGFT 185
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
D P+E R + D + + T
Sbjct: 186 DTFRALHPEEPGWYSWWSYRAGARARNIGWRIDYFCVSNPLASRVKDAAIHPDVTG---- 241
Query: 109 STHCPLTIEYD 119
S HCP+++E D
Sbjct: 242 SDHCPVSLEID 252
>gi|66045712|ref|YP_235553.1| exonuclease III [Pseudomonas syringae pv. syringae B728a]
gi|63256419|gb|AAY37515.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Pseudomonas
syringae pv. syringae B728a]
gi|330971266|gb|EGH71332.1| exonuclease III [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 270
Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 29/144 (20%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ E L+ + + P ++ GD N
Sbjct: 127 QRFYENLQTLLEGHFRNDQPLIVMGDVNISPQDCDIGIGADNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVS 95
+ + E + R++ D + I
Sbjct: 187 WMERLKNWGLVDSFRHLYPEVVDRFSWFDYRSRGFEDEPKRGLRIDLIMTSTGLQPRIKE 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 247 AGVDYDLRAMEKPSDHAPIWLELS 270
>gi|167860654|gb|ACA05109.1| exodeoxyribonuclease III [Flammeovirga yaeyamensis]
Length = 208
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 30/128 (23%), Gaps = 23/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------------GL 51
++ + + V+ GDFN +I + K
Sbjct: 85 EYIAKLKENYKNLVVCGDFNICHKAIDIHNPERNKNTSGFQPAEREWVSKFINEGGFIDA 144
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+F + R + F++ S + S H
Sbjct: 145 FRKFDESPGKYSWWTYRAGARKKNLGW--RIDYFMVQKEMENTL--ISSQLHNEAVHSDH 200
Query: 112 CPLTIEYD 119
CP+ I
Sbjct: 201 CPIEIVLQ 208
>gi|167748893|ref|ZP_02421020.1| hypothetical protein ANACAC_03667 [Anaerostipes caccae DSM 14662]
gi|317470265|ref|ZP_07929659.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
gi|167651863|gb|EDR95992.1| hypothetical protein ANACAC_03667 [Anaerostipes caccae DSM 14662]
gi|316902238|gb|EFV24158.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
Length = 251
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 29/123 (23%), Gaps = 23/123 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K++ P ++ GD N I + + + F
Sbjct: 133 KLEEDKPVILCGDLNVAHTEIDLKNPKTNRKNAGFTDEEREKFTKLLEAGFIDTFRHFYP 192
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ E+ R ++ D + S HCP+ +
Sbjct: 193 DVTEAYSWWSYRFRAREKNAGWRIDYFCVSEGLEERLAEAVIHT----DIYGSDHCPVGL 248
Query: 117 EYD 119
+
Sbjct: 249 YLE 251
>gi|77459871|ref|YP_349378.1| exonuclease III [Pseudomonas fluorescens Pf0-1]
gi|77383874|gb|ABA75387.1| exodeoxyribonuclease III [Pseudomonas fluorescens Pf0-1]
Length = 270
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 14/138 (10%), Positives = 29/138 (21%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ + + P V+ GD N +
Sbjct: 133 LQALLESQFHNEQPLVVMGDVNISPEDCDIGIGPDNMKRWLKTGKCSFLPEEREWMARLK 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
+ ++ R++ D L + + +
Sbjct: 193 NWGLTDSFRHLNPDVTDTFSWFDYRSRGFEDEPKRGLRIDVILASHGLLPRVKAAGVDYE 252
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 253 LRGMEKPSDHAPIWLELS 270
>gi|119961356|ref|YP_946272.1| exodeoxyribonuclease III [Arthrobacter aurescens TC1]
gi|119948215|gb|ABM07126.1| exodeoxyribonuclease III [Arthrobacter aurescens TC1]
Length = 268
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 10/129 (7%), Positives = 26/129 (20%), Gaps = 22/129 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------------------FWQKMDPD 49
+W + + GD+N D ++
Sbjct: 140 AEWVKS--EPTAQIALMGDWNIAPFDDDVWDIELFRNNNYTHVSEPERAAFHAFETAGFT 197
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ + + D + + + + S
Sbjct: 198 DVVRPYTPGPGVYTYWDYTQLRFPKKEGMRIDFCLASPALASRVTGASIDREERKGKGAS 257
Query: 110 THCPLTIEY 118
H P+ +E
Sbjct: 258 DHAPVIVEL 266
>gi|259047804|ref|ZP_05738205.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
gi|259035481|gb|EEW36736.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
Length = 254
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 26/138 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------ 49
+Q W + +K++ P + GD N I + M+
Sbjct: 122 RQV-WEDDFLAFIKKLEETKPVIFCGDLNVAHKEIDLANPKTNTMNAGFTKEERAKFDQV 180
Query: 50 ------GLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ + + F+I ++ Q
Sbjct: 181 VNNDLVDAFRYLYPDTLGAYSWWSYMGGARARNVGW--RIDYFVISQPL--TAFLQEVKI 236
Query: 103 TRRSKLSTHCPLTIEYDF 120
S HCP+ ++ +
Sbjct: 237 RSDVTGSDHCPVEMKIEL 254
>gi|167628004|ref|YP_001678504.1| DNA-(apurinic or apyrimidinic site) lyase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|167598005|gb|ABZ88003.1| DNA-(apurinic or apyrimidinic site) lyase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
Length = 258
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 22/132 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------------------WQKMDPD 49
K+ ++ ++G F++ GDFN I + + +
Sbjct: 128 KEILKEQTESGRDFIVCGDFNIVHKEIDIKNWKSNYDKTSGVLPEEQAWLDHIFDDLGWV 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
E R ++ + + + +SD + + S
Sbjct: 188 DTFRVINHEPLQYTWWSNRGQARANNVGW--RIDYHISTPALKDKVVPESDYVYKENWFS 245
Query: 110 THCPLTIEYDFE 121
H PLTI YD++
Sbjct: 246 DHAPLTISYDYK 257
>gi|298370237|ref|ZP_06981553.1| exodeoxyribonuclease III [Neisseria sp. oral taxon 014 str. F0314]
gi|298281697|gb|EFI23186.1| exodeoxyribonuclease III [Neisseria sp. oral taxon 014 str. F0314]
Length = 258
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-------------------QKMDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKAEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGRVIRDLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDNPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|253580808|ref|ZP_04858071.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847878|gb|EES75845.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 251
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 29/124 (23%), Gaps = 23/124 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K++ P + GDFN I + + + F
Sbjct: 132 KLQESKPVICCGDFNVAHQEIDLKNPKTNRKNAGFTDEERACFGKVLESGFIDTFRYFYP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + R K+ D + + S HCP+ +
Sbjct: 192 DVEGRYSWWSYRFKAREKNAGWRIDYFITSPQLKDKLKGAEIHSEIMG----SDHCPVEL 247
Query: 117 EYDF 120
+
Sbjct: 248 QITL 251
>gi|30021833|ref|NP_833464.1| exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|229129016|ref|ZP_04257989.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
gi|29897389|gb|AAP10665.1| Exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|228654253|gb|EEL10118.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
Length = 252
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DG 50
+ + ++ P + GD N I + + +P D
Sbjct: 128 RSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRENPGFSDEEREKFSCILEEGFIDT 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+P ++ + R + D I + S
Sbjct: 187 YRYLYPNQEGAYSWWSYRMGARAKNIGWRLDYFVVSEGMKDQITEAKINSEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|296880312|ref|ZP_06904277.1| exodeoxyribonuclease III [Clostridium difficile NAP07]
gi|296428755|gb|EFH14637.1| exodeoxyribonuclease III [Clostridium difficile NAP07]
Length = 181
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 33/133 (24%), Gaps = 25/133 (18%)
Query: 7 EWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------------- 49
W + D K+ P ++ GD N I + +
Sbjct: 52 RWEDDFIDYLTKLDNHKPVIVCGDMNVAHKEIDLKNPKNNMKNAGFTKEEREKFSKLLDS 111
Query: 50 ---GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
F +KE R + + D ++S D
Sbjct: 112 GFIDTYRYFNPDKEGVYSWWSYRFNARKNNAGWRIDYFCASKKLEDRLISADIHTEVLG- 170
Query: 106 SKLSTHCPLTIEY 118
S HCP+ +E
Sbjct: 171 ---SDHCPVELEI 180
>gi|302877288|ref|YP_003845852.1| exodeoxyribonuclease III Xth [Gallionella capsiferriformans ES-2]
gi|302580077|gb|ADL54088.1| exodeoxyribonuclease III Xth [Gallionella capsiferriformans ES-2]
Length = 254
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 23/132 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKM 46
E + +G ++ GD+N I + + ++
Sbjct: 126 MEAFLPHLRELRASGREVIVCGDWNIAHKEIDLKNWRGNKKNSGFLPEERAWLTQLFDEV 185
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ R E E+ R ++ D + + S +
Sbjct: 186 GFVDVFRRVHPELEAYTWWSNRGQAWAKNVGWRIDYQIATPAIAGRATSASI----YKEQ 241
Query: 107 KLSTHCPLTIEY 118
+ S H PL I+Y
Sbjct: 242 RFSDHAPLIIDY 253
>gi|90406919|ref|ZP_01215110.1| exodeoxyribonuclease III [Psychromonas sp. CNPT3]
gi|90311961|gb|EAS40055.1| exodeoxyribonuclease III [Psychromonas sp. CNPT3]
Length = 269
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 15/142 (10%), Positives = 31/142 (21%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q + L + + +I GD N +
Sbjct: 126 KRQFYKDLNTYLESHHCAEDNVIIMGDINISPLDLDIGIGEINAKRWLKTKKCSFQPEER 185
Query: 39 -TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
E + R++ D + D + + ++
Sbjct: 186 QWLKKLMDFGFTDTFRLLHPEVSDQYSWFDYRSRGFDDNRGLRIDVILATQKIADNTLNS 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 246 GIDYELRGIEKPSDHAPIWTEF 267
>gi|332533572|ref|ZP_08409434.1| exodeoxyribonuclease III [Pseudoalteromonas haloplanktis ANT/505]
gi|332036974|gb|EGI73433.1| exodeoxyribonuclease III [Pseudoalteromonas haloplanktis ANT/505]
Length = 268
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 15/142 (10%), Positives = 33/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------T 39
+Q + L + ++ GD N +
Sbjct: 126 KRQFYKDLMTHLETNHTPVQDVIVMGDINISPTDLDIGIGEVNAKRWLKTGKCSFQPVER 185
Query: 40 DDFWQKMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ ++ Q E+ R+K +D + D + + +
Sbjct: 186 EWLATLLNWGFKDTFREQNPETDDQYSWFDYRSKGFVDNRGLRIDVVLATNELAARCIDT 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRGIEKPSDHAPIWSTF 267
>gi|289673873|ref|ZP_06494763.1| exonuclease III [Pseudomonas syringae pv. syringae FF5]
Length = 270
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 30/144 (20%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ E L+ + + + P ++ GD N
Sbjct: 127 QRFYENLQTLLEGQFRNDQPLIVMGDVNISPQDCDIGIGADNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVS 95
+ + E + R++ D + I
Sbjct: 187 WMERLKNWGLVDSFRHLYPEVVDRFSWFDYRSRGFEDEPKRGLRIDLIMTSTGLQPRIKE 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 247 AGVDYDLRAMEKPSDHAPIWLELS 270
>gi|154502978|ref|ZP_02040038.1| hypothetical protein RUMGNA_00800 [Ruminococcus gnavus ATCC 29149]
gi|153796517|gb|EDN78937.1| hypothetical protein RUMGNA_00800 [Ruminococcus gnavus ATCC 29149]
Length = 250
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 33/134 (24%), Gaps = 25/134 (18%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+W + +K++ P + GD N I + + +
Sbjct: 120 MKWESDFLAYLKKLEEEKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTEMLN 179
Query: 50 ----GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
F ++E R + F + D L
Sbjct: 180 AGFIDTFRYFYPDQEGIYSWWSYRFSARAKNAGW--RIDYFCVSECLKDRLADAKILT-- 235
Query: 105 RSKLSTHCPLTIEY 118
S HCP+ ++
Sbjct: 236 DVMGSDHCPIELDL 249
>gi|311900422|dbj|BAJ32830.1| putative exodeoxyribonuclease [Kitasatospora setae KM-6054]
Length = 272
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 34/133 (25%), Gaps = 21/133 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------QKMDPDGLL 52
L + + G ++ GD+N + + +D G +
Sbjct: 135 LGELRARAAADGREVLVCGDWNIAHREADLRNWKANQKKAGFLPEERAWLSRVLDEHGYV 194
Query: 53 IRFPQEKES-----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
Q R ++ + D + + + T +
Sbjct: 195 DVLRQHHADVAEGPYSWWSYRGRAFDNDAGWRIDYQMATPGLAARCTAARVERAATHAER 254
Query: 108 LSTHCPLTIEYDF 120
S H P+T +D
Sbjct: 255 WSDHAPVTAVFDL 267
>gi|311743284|ref|ZP_07717091.1| exodeoxyribonuclease III [Aeromicrobium marinum DSM 15272]
gi|311313352|gb|EFQ83262.1| exodeoxyribonuclease III [Aeromicrobium marinum DSM 15272]
Length = 254
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 13/135 (9%), Positives = 30/135 (22%), Gaps = 20/135 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKM 46
L + E ++W + GD+N D ++ +
Sbjct: 121 LDRLREAGQEWLAA--DPDAQIALTGDWNVAPQDEDVWDMAAFAGSTHVSEPERAAFRAV 178
Query: 47 DPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
G + + D + + + +
Sbjct: 179 VDAGYADVVRPHTPGPGVYTFWDYQQLRFPKREGMRIDFQLCSPALAARVEKGWIDREER 238
Query: 104 RRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 239 KGKGASDHAPVVIDL 253
>gi|229009363|ref|ZP_04166629.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides Rock1-4]
gi|228751907|gb|EEM01668.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides Rock1-4]
Length = 354
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G V+ GD+N+ ++ + D +++ P+ L+ +
Sbjct: 228 IRKQQVEFLKEYMNRHYKNGDYLVLGGDWNQLLSDVQLKDPKFKEEWPEWLVQLPEDFTD 287
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
KS ++ FL+ + IVS DL S H
Sbjct: 288 GGFQWAVDDTVWTVRDNVKSYVEDENFVTIIDGFLVSPNVEIVSVQGHDLKFEN---SDH 344
Query: 112 CPLTIEYDFE 121
P+ +
Sbjct: 345 NPVNAVLKLK 354
>gi|86750015|ref|YP_486511.1| exodeoxyribonuclease III [Rhodopseudomonas palustris HaA2]
gi|86573043|gb|ABD07600.1| exodeoxyribonuclease III [Rhodopseudomonas palustris HaA2]
Length = 284
Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDG 50
+ L + A + +K+G+P V+AGDFN + + G
Sbjct: 153 MKRLNRHAAKLLKSGVPVVLAGDFNVVPTPADIYPTRSWDKDALLQPEPRALFAALLKQG 212
Query: 51 LL---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
E+ + D+ ++ +
Sbjct: 213 WTDALRALHPEQAPYTFWTYWRNRFERDHGLRIDHLLLDPASAQRLARGGVDRAIRGAPD 272
Query: 108 LSTHCPLTIEY 118
S H P I
Sbjct: 273 ASDHAPAWIVL 283
>gi|239994244|ref|ZP_04714768.1| exodeoxyribonuclease III [Alteromonas macleodii ATCC 27126]
Length = 269
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 27/137 (19%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L + D ++ GD N + +
Sbjct: 131 KDLMTYLDDNHTPDDNVIVMGDVNISHTDLDIGIGEDNRKRWLKTGKCSFLPEEREWLNT 190
Query: 43 WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ E R+K D + D +
Sbjct: 191 VIDWGFEDSFRTLNPETNDKFSWFDYRSKGFNDNRGLRIDLILATKPLHAKLHDAGIDYE 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ EY
Sbjct: 251 LRGIEKPSDHAPIWAEY 267
>gi|229174398|ref|ZP_04301930.1| Exodeoxyribonuclease [Bacillus cereus MM3]
gi|228608958|gb|EEK66248.1| Exodeoxyribonuclease [Bacillus cereus MM3]
Length = 252
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 30/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + Q + P V GD N I + + +P
Sbjct: 128 RAYIKQ-LDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDT 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + R + D I + S
Sbjct: 187 YRYLYPDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDKITEAKINSEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|330503248|ref|YP_004380117.1| exonuclease III [Pseudomonas mendocina NK-01]
gi|328917534|gb|AEB58365.1| exonuclease III [Pseudomonas mendocina NK-01]
Length = 270
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 14/138 (10%), Positives = 26/138 (18%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L++ ++ V+ GD N +
Sbjct: 133 LQQLLVERFDPQQALVVMGDINISPEDCDIGIGEPNRLRWLKTGKCSFLPEEREWLATLK 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
E + R++ D L
Sbjct: 193 SWGLVDSFRHLNPEVNDRFSWFDYRSRGFEDEPKRGLRIDVILASQQLQARFKDAGIDYD 252
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +E +
Sbjct: 253 LRGMDKPSDHAPIWLELN 270
>gi|319954545|ref|YP_004165812.1| exodeoxyribonuclease iii xth [Cellulophaga algicola DSM 14237]
gi|319423205|gb|ADV50314.1| exodeoxyribonuclease III Xth [Cellulophaga algicola DSM 14237]
Length = 254
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 26/137 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF------------------- 42
+Q +W K + + ++ P + GDFN +I +D
Sbjct: 122 RQ-QWDKDFLAYLKNLEKKKPVIACGDFNVAHQAIDLKNDKANYNKTAGYTQIEIDGMDN 180
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ D ++ + R KS FL+ + + +
Sbjct: 181 FIANDFVDSFRALHPDEVAYTFWSYRFKSRERNTGW--RIDYFLVSKAIADKIKKVTIYA 238
Query: 103 TRRSKLSTHCPLTIEYD 119
S HCP+ I
Sbjct: 239 --DIMGSDHCPIGITLS 253
>gi|229002991|ref|ZP_04160856.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides Rock3-17]
gi|228758256|gb|EEM07438.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides Rock3-17]
Length = 354
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G V+ GD+N+ ++ + D +++ P+ L+ +
Sbjct: 228 IRKQQVEFLKEYMNRHYKNGDYLVLGGDWNQLLSDVQLKDPKFKEEWPEWLVQLPEDFTD 287
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
KS ++ FL+ + IVS DL S H
Sbjct: 288 GGFQWAVDDTVWTVRDNVKSYVEDENFVTIIDGFLVSPNVEIVSVQGHDLKFEN---SDH 344
Query: 112 CPLTIEYDFE 121
P+ +
Sbjct: 345 NPVNAVLKLK 354
>gi|85711701|ref|ZP_01042758.1| Exonuclease III [Idiomarina baltica OS145]
gi|85694561|gb|EAQ32502.1| Exonuclease III [Idiomarina baltica OS145]
Length = 269
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 32/138 (23%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
L + + + P ++ GD N D +
Sbjct: 131 RDLINYLNDDLSPEQPVIVMGDMNISHQDRDIGIGETNAKRWLRTGKCSFLPEERDWLNE 190
Query: 45 KMDP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+D D P++ R++ D + D +
Sbjct: 191 VLDWGLIDTYRTLNPEQDNEFSWFDYRSRGFDDNRGLRIDLILATQTLADRCEESGIDYE 250
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ ++
Sbjct: 251 LRGIEKPSDHAPIWSQFS 268
>gi|315925763|ref|ZP_07921970.1| exodeoxyribonuclease III [Pseudoramibacter alactolyticus ATCC
23263]
gi|315620872|gb|EFV00846.1| exodeoxyribonuclease III [Pseudoramibacter alactolyticus ATCC
23263]
Length = 254
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 31/126 (24%), Gaps = 22/126 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIR 54
D+++ G +I GD N I +
Sbjct: 133 VDERVARGEKVIICGDVNTAHREIDLKNPKSNAKRSGFLPIEREWMDHFFAGGYIDTYRY 192
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
F E+ + R + + F ++ + S HCP+
Sbjct: 193 FYPEQVTYSWWSYRFNARKNNAGW--RIDYFFASDNAKDLLA--DAAIHTDVTGSDHCPI 248
Query: 115 TIEYDF 120
++ +
Sbjct: 249 SLTLNL 254
>gi|126729725|ref|ZP_01745538.1| exodeoxyribonuclease III [Sagittula stellata E-37]
gi|126709844|gb|EBA08897.1| exodeoxyribonuclease III [Sagittula stellata E-37]
Length = 260
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 37/131 (28%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD 49
E L A+Q + + +P V+AGD+N + F + ++
Sbjct: 128 MERLHTRAEQLLASEMPAVMAGDYNVIPQAEDAAKPDAWTDDALFLPQTRQAFRRIVNLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + +++ + L+ + + K
Sbjct: 188 FTEAFRARTQGPGHYSFWDYQANSWQRNNGIRIDHLLLTPQAADLLNDCWIEKDVRAAEK 247
Query: 108 LSTHCPLTIEY 118
S H P+ +
Sbjct: 248 PSDHVPVWCDL 258
>gi|220930682|ref|YP_002507591.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
gi|220001010|gb|ACL77611.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
Length = 253
Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 33/126 (26%), Gaps = 24/126 (19%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLI--- 53
+ Q ++ P +I GD N I + + ++ G +
Sbjct: 132 YLKQ-LEETKPVIICGDMNVAHKEIDIKNPRSNKRSAGFTMEEREKFSELLEQGFVDSYR 190
Query: 54 -RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+P + + K+ F + + + S HC
Sbjct: 191 TLYPDKTGAYTWWSYMFKARERNVGW--RIDYFCVSEVLKNIIEEADIYS--EIMGSDHC 246
Query: 113 PLTIEY 118
P+ +
Sbjct: 247 PVGLTI 252
>gi|319945181|ref|ZP_08019443.1| exodeoxyribonuclease III [Lautropia mirabilis ATCC 51599]
gi|319741751|gb|EFV94176.1| exodeoxyribonuclease III [Lautropia mirabilis ATCC 51599]
Length = 162
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 23/137 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKM 46
E + + +G ++ GD+N I + ++
Sbjct: 30 MEAFARHMQELKDSGREIILCGDWNVAHKEIDLKNWRSNQKNSGFLPEERQWLSSLLDEI 89
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ + E R ++ D + + + + +
Sbjct: 90 GFVDVFRQLDPRPEQYTWWSNRGQAWAKNVGWRIDYQIATPGIAATATRAEI----YKDE 145
Query: 107 KLSTHCPLTIEYDFEKG 123
+ S H PL I+YD+ +G
Sbjct: 146 RFSDHAPLIIDYDWPRG 162
>gi|154484298|ref|ZP_02026746.1| hypothetical protein EUBVEN_02011 [Eubacterium ventriosum ATCC
27560]
gi|149734775|gb|EDM50692.1| hypothetical protein EUBVEN_02011 [Eubacterium ventriosum ATCC
27560]
Length = 251
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 24/129 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
K + + ++ P V+ GD N I + + +
Sbjct: 127 KAYLKK-LEESKPVVLCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKMTKLLDDGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + R K+ D + D S
Sbjct: 186 FRYFYPDLEGKYSWWSYRFKAREKNAGWRIDYFIVSEALKDKLEGADIHTEILG----SD 241
Query: 111 HCPLTIEYD 119
HCP+ ++ +
Sbjct: 242 HCPIELDLN 250
>gi|332291583|ref|YP_004430192.1| exodeoxyribonuclease III Xth [Krokinobacter diaphorus 4H-3-7-5]
gi|332169669|gb|AEE18924.1| exodeoxyribonuclease III Xth [Krokinobacter diaphorus 4H-3-7-5]
Length = 254
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 32/131 (24%), Gaps = 22/131 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------G 50
L+ + ++ + VI GD+N +I D K
Sbjct: 128 LQDYVNKIKQDVPNLVIGGDYNICHEAIDIHDPVRNKNVSGFLPVEREWISNFMDSGFID 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+E ++ R + + D +I S
Sbjct: 188 SFRHLNKEPDNYTWWSYRANARANNKGWRIDYNMVSEPLKNNIERAVILSDAV----HSD 243
Query: 111 HCPLTIEYDFE 121
HCP +E
Sbjct: 244 HCPHMVELKLS 254
>gi|307823885|ref|ZP_07654113.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
gi|307735179|gb|EFO06028.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
Length = 254
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 32/125 (25%), Gaps = 23/125 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF----------------WQKMDPD---GLLIRF 55
++++ P + GDFN I + + F
Sbjct: 134 RQLQKKKPLIACGDFNVAHQEIDIARPKPNYNKSAGYTQVEIDGFSRFLDAGLVDTFRHF 193
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + R + D + ++ + S HCP+
Sbjct: 194 HPDTVAYSWWSFRGGARARNVGWRIDYVLTSKTLAGNVKQAFILPEISG----SDHCPVG 249
Query: 116 IEYDF 120
IE DF
Sbjct: 250 IEIDF 254
>gi|84393754|ref|ZP_00992502.1| exodeoxyribonuclease III [Vibrio splendidus 12B01]
gi|84375616|gb|EAP92515.1| exodeoxyribonuclease III [Vibrio splendidus 12B01]
Length = 268
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 26/137 (18%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L + + ++ GD N I
Sbjct: 131 KDLMTYLNDYHNKDEQVIVMGDINISPTDIDIGIGEPNAKRWLKTGKCSFQPEEREWLKT 190
Query: 43 WQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
E + R+K +D + D +
Sbjct: 191 LMDWGFVDSFRLLHPEVNDQYSWFDYRSKGFVDNRGLRIDVVLATQKLADKCTEAGIDYE 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 251 LRGIEKPSDHAPIWSTF 267
>gi|296313703|ref|ZP_06863644.1| exodeoxyribonuclease III [Neisseria polysaccharea ATCC 43768]
gi|296839722|gb|EFH23660.1| exodeoxyribonuclease III [Neisseria polysaccharea ATCC 43768]
Length = 259
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 35/127 (27%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ D + + + VS + K S H P
Sbjct: 194 TLYPDNPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAVKAVSAHV----YKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|317401341|gb|EFV81978.1| endonuclease [Achromobacter xylosoxidans C54]
Length = 262
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 23/137 (16%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------- 42
L + G W+ + + KTG FVI GD+N I +
Sbjct: 127 LDRFGPWIDELMHEHKKTGREFVICGDWNIAHKEIDLKNWKGNLKNSGFLPEERAWLTDV 186
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ K + + + R ++ + + + +
Sbjct: 187 FDKRGFVDVFRTIDERPDQYTWWSNRGQAWAKNVGW--RIDYQIATPGIAARARSVAIY- 243
Query: 103 TRRSKLSTHCPLTIEYD 119
+ + S H PLTI+YD
Sbjct: 244 -KDERFSDHAPLTIDYD 259
>gi|308175988|ref|YP_003915394.1| exodeoxyribonuclease III [Arthrobacter arilaitensis Re117]
gi|307743451|emb|CBT74423.1| exodeoxyribonuclease III [Arthrobacter arilaitensis Re117]
Length = 266
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/134 (9%), Positives = 29/134 (21%), Gaps = 24/134 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-----------------FWQK 45
+ WL++ + GD+N + D +
Sbjct: 137 KESAGWLEE------NPQAQIALMGDWNIAPKNEDVWDIDFFVENNLTHVSAPERAAFAA 190
Query: 46 MDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ G E + D + ++ + +
Sbjct: 191 FEDLGFTDVVRPHTEGEYTYWDYTQLRFPKGEGMRIDFSLTSPALTARVIGASIDREERK 250
Query: 105 RSKLSTHCPLTIEY 118
S H P+ +E
Sbjct: 251 GKGASDHAPVIVEL 264
>gi|182414598|ref|YP_001819664.1| endonuclease/exonuclease/phosphatase [Opitutus terrae PB90-1]
gi|177841812|gb|ACB76064.1| Endonuclease/exonuclease/phosphatase [Opitutus terrae PB90-1]
Length = 313
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 7/127 (5%)
Query: 2 LSQ--QGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ 57
L + + ++ ++ FVI GDFN S + + P
Sbjct: 189 LRRVGEATAIRDVVLARMGDPGNARFVILGDFNDDKASKPVQRLLQR--GSVRIASLLPV 246
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ Y +D + + + + +DLD S H P+ ++
Sbjct: 247 SDSRGDTWTYHYRRRDSYTRVDHILVSPALAPAVAQHRAWIADLDGVNE-ASDHRPVVVK 305
Query: 118 YDFEKGN 124
DF + +
Sbjct: 306 LDFAESS 312
>gi|227497368|ref|ZP_03927600.1| possible exodeoxyribonuclease III [Actinomyces urogenitalis DSM
15434]
gi|226833239|gb|EEH65622.1| possible exodeoxyribonuclease III [Actinomyces urogenitalis DSM
15434]
Length = 274
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 33/130 (25%), Gaps = 20/130 (15%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIR 54
+ G V+AGD N + + + G +
Sbjct: 145 ELLASAQAGGPQVVMAGDLNVVRSERDIKNWKPNHNKVAGVLDEEIAHLEGWFASGWVDV 204
Query: 55 FPQ----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ +R K+ + D + + VS + + S
Sbjct: 205 ARHLEPEAQGPYTWWSQRGKAFDNDAGWRIDYQVATPSLAGRAVSAVVDRAASYAEQWSD 264
Query: 111 HCPLTIEYDF 120
H PL +EY
Sbjct: 265 HAPLVVEYQL 274
>gi|109946643|ref|YP_663871.1| exodeoxyribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|109713864|emb|CAJ98872.1| exodeoxyribonuclease [Helicobacter acinonychis str. Sheeba]
Length = 250
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+++ ++ P ++ GD N N I + + +
Sbjct: 127 RRFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNTGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNSLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|260909404|ref|ZP_05916112.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
gi|260636496|gb|EEX54478.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
Length = 249
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 27/120 (22%), Gaps = 22/120 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
+ P ++ GD N I + + + E
Sbjct: 133 LDKRKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEERQKMTQLLGAGFTDTFRWKYPE 192
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + R K+ D ++ S HCP+ +E
Sbjct: 193 EITYSWWSYRFKARERNTGWRIDYFLVSDRLQSEVLDAKIHTDILG----SDHCPVELEL 248
>gi|256838624|ref|ZP_05544134.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256739543|gb|EEU52867.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 280
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 4/106 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+KI P + GDFN +S + D I +
Sbjct: 179 KKIAGDSPAICVGDFNGTPDSEPIQILKSDGLLLDSREISKTPPYGTVGTT----NQFNL 234
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + Y + S H P+ IE +F
Sbjct: 235 NAPMKNRIDYIFVTKNIHVNKYGTLNEFQYGHYPSDHFPIMIEAEF 280
>gi|311113023|ref|YP_003984245.1| exodeoxyribonuclease III [Rothia dentocariosa ATCC 17931]
gi|310944517|gb|ADP40811.1| exodeoxyribonuclease III [Rothia dentocariosa ATCC 17931]
Length = 282
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 31/129 (24%), Gaps = 20/129 (15%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM------DPDGLLIRFPQE------- 58
+ + +I GD N + + + + +F E
Sbjct: 154 RLPELAQHSDHVLIVGDLNVGHTELDIKNWKANQKRAGFLPEERAYFDKFFGEIGYEDVA 213
Query: 59 -------KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
R K+ + D + V + + S H
Sbjct: 214 RKLAGEVPGPYTWWSYRGKAFDNDAGWRIDYHMATPALAAKAVEATVDRAASYDERFSDH 273
Query: 112 CPLTIEYDF 120
PL ++Y F
Sbjct: 274 APLVVDYQF 282
>gi|262165968|ref|ZP_06033705.1| exodeoxyribonuclease III [Vibrio mimicus VM223]
gi|262025684|gb|EEY44352.1| exodeoxyribonuclease III [Vibrio mimicus VM223]
Length = 195
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/142 (9%), Positives = 28/142 (19%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q L + + V+ GD N +
Sbjct: 53 KRQFYRDLMTYLREHRSNTESLVVMGDINISPLDLDIGIGEANRKRWLQTGKCSFQPEER 112
Query: 39 -TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ E + R++ D + D + +
Sbjct: 113 EWLQTLMDWGLVDTFRQLHPEVSDQFSWFDYRSRGFDDNRGLRIDVILATPTLAETCQEA 172
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 173 GIDYELRGIDKPSDHAPIWATF 194
>gi|229031365|ref|ZP_04187367.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
gi|228729930|gb|EEL80908.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
Length = 252
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 30/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ P + GD N I + + +P
Sbjct: 128 RAYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRILEEGFIDT 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + R + D I + S
Sbjct: 187 YRYLYPDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDKITEAKINSEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|258405188|ref|YP_003197930.1| exodeoxyribonuclease III [Desulfohalobium retbaense DSM 5692]
gi|257797415|gb|ACV68352.1| exodeoxyribonuclease III [Desulfohalobium retbaense DSM 5692]
Length = 255
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 28/124 (22%), Gaps = 22/124 (17%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRF 55
+ ++ P ++ GD N I + F
Sbjct: 134 AEHLRQTKPVIVCGDLNTAHTEIDLKNPKANADRSGFLPEERAWIDTFISHGYHDTFRMF 193
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
E R + F + + ++ S HCP+
Sbjct: 194 TSEGGHYSWWTYRFNARARNAGW--RIDYFFVSDEL--TGRVRNAWIEDTVYGSDHCPIG 249
Query: 116 IEYD 119
+E D
Sbjct: 250 LEID 253
>gi|332305999|ref|YP_004433850.1| exodeoxyribonuclease III [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332173328|gb|AEE22582.1| exodeoxyribonuclease III [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 269
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 33/137 (24%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------------DD 41
E L + + V+ GD N + +D
Sbjct: 131 EDLSTYLNTHHTPDENVVVMGDVNISHTDLDIGIGEPNRKRWLQTGKCSFLPEERLWLND 190
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
DG P+ E R+K LD + D S+
Sbjct: 191 LIDWGFSDGFRTLNPETNEHFSWFDYRSKGFLDNRGLRIDLILATKKLHESLSDAGIDYE 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ EY
Sbjct: 251 LRGIEKPSDHAPIWAEY 267
>gi|187933475|ref|YP_001885926.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|187721628|gb|ACD22849.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 251
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 32/126 (25%), Gaps = 24/126 (19%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ K P ++ GD N I + + +
Sbjct: 128 RSYLNELNKA-KPVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKFGELLKSGFIDT 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + + R + + D D +V S
Sbjct: 187 YRYFYPDKEGAYSWWSYRFNARANNAGWRIDYFLVSKDFEDRLVDAKIHTQIEG----SD 242
Query: 111 HCPLTI 116
HCP+ +
Sbjct: 243 HCPVEL 248
>gi|254465319|ref|ZP_05078730.1| exodeoxyribonuclease III [Rhodobacterales bacterium Y4I]
gi|206686227|gb|EDZ46709.1| exodeoxyribonuclease III [Rhodobacterales bacterium Y4I]
Length = 297
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 27/134 (20%), Gaps = 24/134 (17%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDP 48
++ W V+ GD N D D +
Sbjct: 167 AMRDWF--HADKPEKSVLVGDLNIAPREDDVWDHKKLLKVVSHTPVEVEHLADTQEAGGW 224
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRS 106
+ R + R D R + + S
Sbjct: 225 IDITRRDIPGGKLYSWWSYR-ARDWDAADKGRRLDHIWATPDIAGAGHSSRILRDARGWE 283
Query: 107 KLSTHCPLTIEYDF 120
K S H P+ +D
Sbjct: 284 KPSDHAPVFATFDL 297
>gi|86136925|ref|ZP_01055503.1| exodeoxyribonuclease III, putative [Roseobacter sp. MED193]
gi|85826249|gb|EAQ46446.1| exodeoxyribonuclease III, putative [Roseobacter sp. MED193]
Length = 262
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 25/133 (18%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W ++ GD N D +
Sbjct: 133 MRDWFKA--AAPEKSILVGDLNIAPREDDVWDHKKMLKIVSHTPVEVDLLAEVQDAGGWA 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ E R K D R + S K
Sbjct: 191 DVTRADIPEGLLYSWWSYRAKDW-DAADKGRRLDHVWATEDICQAAHSSRVLRAARGWEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFATFDL 262
>gi|150388422|ref|YP_001318471.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
gi|149948284|gb|ABR46812.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
Length = 251
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 29/132 (21%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + P ++ GD N I + K
Sbjct: 124 DEFRAHLKE-LDAIKPVILCGDLNVAHEEIDLKNPKSNKKSAGFTNEEREKMTELLTSGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + + K+ D +
Sbjct: 183 IDSFRYFYPDLEGAYSWWSYMGKARERNAGWRIDYFVVSERLKNQLKEAAIHPQIMG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ +E D
Sbjct: 240 -SDHCPVVLELD 250
>gi|167033891|ref|YP_001669122.1| exonuclease III [Pseudomonas putida GB-1]
gi|166860379|gb|ABY98786.1| exodeoxyribonuclease III [Pseudomonas putida GB-1]
Length = 270
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/138 (10%), Positives = 29/138 (21%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ + + + P ++ GD N + +
Sbjct: 133 LQALLEGQFRNDQPLLVMGDMNISPQDCDIGIGADNAKRWLKTGKCSFLPEEREWMERLK 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
E + R++ D + I +
Sbjct: 193 GWGLVDSFRHLYPEVTDRFSWFDYRSRGFEDDPKRGLRIDLIMASQHLVPRIKAAGVDYE 252
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 253 LRAMEKPSDHAPIWLELS 270
>gi|85059341|ref|YP_455043.1| exonuclease III [Sodalis glossinidius str. 'morsitans']
gi|84779861|dbj|BAE74638.1| exodeoxyribonuclease III [Sodalis glossinidius str. 'morsitans']
Length = 268
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 12/139 (8%), Positives = 31/139 (22%), Gaps = 25/139 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
L+ + +Q +I GD N + +
Sbjct: 130 RDLQGYVEQSHHGESLLLIMGDMNISPTDLDIGIGEESRKRWLRTGKCSFLPEERAWMER 189
Query: 45 KMDPDGLLIRFP---QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + + R++ + + D + + +
Sbjct: 190 LLSWGLVDTYRQANPTDDSRYSWFDYRSRGFDENRGLRIDLLLASKPLAAVVRAAGIDYT 249
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ ++
Sbjct: 250 IRAMDKPSDHAPVWADFAL 268
>gi|33591597|ref|NP_879241.1| putative endonuclease [Bordetella pertussis Tohama I]
gi|33571240|emb|CAE44701.1| putative endonuclease [Bordetella pertussis Tohama I]
gi|332380997|gb|AEE65844.1| putative endonuclease [Bordetella pertussis CS]
Length = 262
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 42/137 (30%), Gaps = 23/137 (16%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------- 42
L Q G WL + KTG FVI GD+N I +
Sbjct: 127 LDQFGPWLDGLMAEHRKTGREFVICGDWNIAHKEIDLKNWKGNQKNSGFLPEERAWLTEV 186
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ + + + + + R ++ + + + S
Sbjct: 187 FDRRGFVDVFRKLDERADQYTWWSNRGQAWAKNVGW--RIDYQIATPGIAERARATSIY- 243
Query: 103 TRRSKLSTHCPLTIEYD 119
+ + S H PLT++YD
Sbjct: 244 -KDERFSDHAPLTVDYD 259
>gi|229143782|ref|ZP_04272202.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST24]
gi|228639657|gb|EEK96067.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST24]
Length = 788
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I +S + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDSVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|323358932|ref|YP_004225328.1| extracellular nuclease [Microbacterium testaceum StLB037]
gi|323275303|dbj|BAJ75448.1| predicted extracellular nuclease [Microbacterium testaceum StLB037]
Length = 1293
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 36/134 (26%), Gaps = 22/134 (16%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q E L +A ++ K G + GDFN + D + +
Sbjct: 481 RQAEALVAFAGERAKTVDGGAVFLLGDFNAYAQEDPIQ------VLRDAGYADLGADTGT 534
Query: 62 TCNVIKRNKSSLDYFVIDRDN-----------KNFLIDNSFSIVSYDQSDLDTRR---SK 107
SLD+ + N + Y+ + +
Sbjct: 535 YTYSFSGQSGSLDHVLASPAARELVTGTDIWNINAGEALALEYSRYNANVRSFYDASPYR 594
Query: 108 LSTHCPLTIEYDFE 121
S H P+ + D
Sbjct: 595 SSDHDPVVVGLDLS 608
>gi|255066692|ref|ZP_05318547.1| exodeoxyribonuclease III [Neisseria sicca ATCC 29256]
gi|255049020|gb|EET44484.1| exodeoxyribonuclease III [Neisseria sicca ATCC 29256]
Length = 259
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKAEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHTLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDNPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|199436395|dbj|BAG70947.1| thermostable exonuclease III [Thermoplasma acidophilum]
Length = 250
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 34/121 (28%), Gaps = 18/121 (14%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQEK 59
+++ P +I GDFN I D + +D + K
Sbjct: 132 ELRKKKPLIICGDFNVAHEEIDIARPKDNENNAGFTKQERDWMTKFLDSGYVDTYRIFMK 191
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
E + + I F++ + + S H P+T+E D
Sbjct: 192 EGGHYSWWSYRFNARAKNIGWRIDYFVVSDDIR--DRVKKAEILETVTGSDHAPVTLEVD 249
Query: 120 F 120
Sbjct: 250 L 250
>gi|152990892|ref|YP_001356614.1| exodeoxyribonuclease III [Nitratiruptor sp. SB155-2]
gi|151422753|dbj|BAF70257.1| exodeoxyribonuclease III [Nitratiruptor sp. SB155-2]
Length = 262
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 32/127 (25%), Gaps = 20/127 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLI 53
LK++ Q V+ GD N I D ++ GL+
Sbjct: 127 LKEYMTQFDLKKENIVVVGDMNVAREDIDVWDAELLRNTIGFMDDEREAFEDFLSIGLVD 186
Query: 54 RF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDTRRSKL 108
F + + +N + + D S + R
Sbjct: 187 LFRECHPDTKQFTWWDYKNGAVWRDEGMRIDYILTSPAMKERCESIEVDMWTRKRRSPTP 246
Query: 109 STHCPLT 115
S H P+
Sbjct: 247 SDHAPVV 253
>gi|224827230|ref|ZP_03700324.1| exodeoxyribonuclease III Xth [Lutiella nitroferrum 2002]
gi|224600519|gb|EEG06708.1| exodeoxyribonuclease III Xth [Lutiella nitroferrum 2002]
Length = 258
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------------GLL 52
++ G VI GD+N N I + + +
Sbjct: 133 HLNELRAAGRDIVICGDWNIAHNEIDLKNWKGNLKNSGFLPEERAWMGELLGEGGWHDVW 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
R E R ++ ++ S + S + K S H
Sbjct: 193 RRLYPEVPGYTWWSNRGQAYAKDVGW--RIDYHIVTPSMMECARAASVY--KDEKFSDHA 248
Query: 113 PLTIEYD 119
PL ++YD
Sbjct: 249 PLIVDYD 255
>gi|269213939|ref|ZP_05983198.2| exodeoxyribonuclease III [Neisseria cinerea ATCC 14685]
gi|269144958|gb|EEZ71376.1| exodeoxyribonuclease III [Neisseria cinerea ATCC 14685]
Length = 274
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 149 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWR 208
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 209 TLYPDNPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 264
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 265 LVVEYDY 271
>gi|210634817|ref|ZP_03298323.1| hypothetical protein COLSTE_02250 [Collinsella stercoris DSM 13279]
gi|210158621|gb|EEA89592.1| hypothetical protein COLSTE_02250 [Collinsella stercoris DSM 13279]
Length = 280
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 23/122 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRFPQE-- 58
+ +TG P V GDFN N I + + ++ G F
Sbjct: 161 EDETGKPVVTCGDFNVAHNEIDLKNPKSNRGNAGFSDEERSKFVELLDAGYTDTFRAANP 220
Query: 59 --KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + R + + FL+ +S + ++ S HCP+T+
Sbjct: 221 DLEGAYSWWSYRFNARKNNAGW--RIDYFLVSDSIA--DRVRATGIRSDIFGSDHCPVTL 276
Query: 117 EY 118
E
Sbjct: 277 EI 278
>gi|256380462|ref|YP_003104122.1| exodeoxyribonuclease III Xth [Actinosynnema mirum DSM 43827]
gi|255924765|gb|ACU40276.1| exodeoxyribonuclease III Xth [Actinosynnema mirum DSM 43827]
Length = 264
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 19/130 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------G 50
L + ++ G ++ GD+N +
Sbjct: 134 LVELREKAAADGREVLVCGDWNIAHRQADLKSWKTNQKSAGFLPYEREWLGSVFESGYTD 193
Query: 51 LLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ + + R K+ + D + + + T + S
Sbjct: 194 VVRALHPDVEGPYSWWSYRGKAFDNDSGWRIDYQVASEGLAARAETAVVERAATYAERWS 253
Query: 110 THCPLTIEYD 119
H P+T+EY
Sbjct: 254 DHAPVTVEYR 263
>gi|302388430|ref|YP_003824252.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
gi|302199058|gb|ADL06629.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
Length = 251
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 30/129 (23%), Gaps = 24/129 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + ++ P + GD N I + + +
Sbjct: 125 DAVLAYLKK-LEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKFTVLLESGF 183
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F E+E R + D + S
Sbjct: 184 IDTYRYFYPEQEGIYSWWSYRFSARKKNAGWRIDYFCVSESLKDRLASAAIHTEVLG--- 240
Query: 108 LSTHCPLTI 116
S HCP+ +
Sbjct: 241 -SDHCPVEL 248
>gi|90579330|ref|ZP_01235140.1| putative exodeoxyribonuclease III [Vibrio angustum S14]
gi|90440163|gb|EAS65344.1| putative exodeoxyribonuclease III [Vibrio angustum S14]
Length = 268
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 25/132 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINS---------------------IGDTDDFWQKMD 47
L + + ++ GD N ++ Q +
Sbjct: 133 LMNYLNTAHTNDEELIVMGDINISPTDLDIGIGPANAKRWLKTGKCSFQPVEREWLQTLL 192
Query: 48 PDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
G + F Q + R+K +D + D + + D
Sbjct: 193 DWGFVDTFRQLHPTVDDKYSWFDYRSKGFVDNRGLRIDVILATPSLAERCIESDIDYELR 252
Query: 104 RRSKLSTHCPLT 115
K S H P+
Sbjct: 253 GIEKPSDHAPIW 264
>gi|145299881|ref|YP_001142722.1| exodeoxyribonuclease III [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142852653|gb|ABO90974.1| exodeoxyribonuclease III [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 268
Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 29/137 (21%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
E L+ + + V+ GD N + +
Sbjct: 131 ENLQHYLETHHTPNDQLVLIGDVNISPTDLDIGIGEANRKRWLREGKCSFLPIEREWMER 190
Query: 43 WQKMDPDGLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ E E R+K + + D ++
Sbjct: 191 LKGFGLTDTFRAANPTECERFSWFDYRSKGFDENRGLRIDLIMASDALKDTVTETGIDYE 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 251 LRGIEKPSDHAPIWATF 267
>gi|317056539|ref|YP_004105006.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
gi|315448808|gb|ADU22372.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
Length = 250
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 33/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------ 48
+ ++ + Q + P V GD N I + +
Sbjct: 123 DDMRAYLSQ-LDKTKPVVYCGDLNVAHEEIDLKNPKSNAGNAGFSDEERGKFTELLGAGF 181
Query: 49 -DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D +P + + R + + D + T
Sbjct: 182 ADTFRRLYPDKAGAYSWWSYRFNARKNNAGWRIDYFVVSERLMDKVKDSKILSDITG--- 238
Query: 108 LSTHCPLTIEYDF 120
S HCP+ ++ +
Sbjct: 239 -SDHCPVELDIEL 250
>gi|33598562|ref|NP_886205.1| putative endonuclease [Bordetella parapertussis 12822]
gi|33603508|ref|NP_891068.1| putative endonuclease [Bordetella bronchiseptica RB50]
gi|33574691|emb|CAE39344.1| putative endonuclease [Bordetella parapertussis]
gi|33577632|emb|CAE34897.1| putative endonuclease [Bordetella bronchiseptica RB50]
Length = 262
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 42/137 (30%), Gaps = 23/137 (16%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------- 42
L Q G WL + KTG FVI GD+N I +
Sbjct: 127 LDQFGPWLDGLMAEHRKTGREFVICGDWNIAHKEIDLKNWKGNQKNSGFLPEERAWLTEV 186
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ + + + + + R ++ + + + S
Sbjct: 187 FDRRGFVDVFRKLDERADQYTWWSNRGQAWAKNVGW--RIDYQIATPGIAERARATSIY- 243
Query: 103 TRRSKLSTHCPLTIEYD 119
+ + S H PLT++YD
Sbjct: 244 -KDERFSDHAPLTVDYD 259
>gi|315497172|ref|YP_004085976.1| exodeoxyribonuclease iii xth [Asticcacaulis excentricus CB 48]
gi|315415184|gb|ADU11825.1| exodeoxyribonuclease III Xth [Asticcacaulis excentricus CB 48]
Length = 266
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 31/138 (22%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMD 47
E L + P +IAGD N D
Sbjct: 130 ERLTAHLKTR-NPDAPLLIAGDLNIAPGENDVWSHRQMLKVVSHTPPELEAFADLMAAGG 188
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS-----IVSYDQSDLD 102
E + + + LI+ + ++ D
Sbjct: 189 FHDAFRELWPEPQKLFTWWSYRAADFRKSNRGLRLDHLLINPALKARITSPIAAVIHDSV 248
Query: 103 TRRSKLSTHCPLTIEYDF 120
+ S H P+ IE+D
Sbjct: 249 REWDRPSDHAPIQIEFDL 266
>gi|111115360|ref|YP_709978.1| exodeoxyribonuclease III [Borrelia afzelii PKo]
gi|216263647|ref|ZP_03435642.1| exodeoxyribonuclease III [Borrelia afzelii ACA-1]
gi|110890634|gb|ABH01802.1| exodeoxyribonuclease III [Borrelia afzelii PKo]
gi|215980491|gb|EEC21312.1| exodeoxyribonuclease III [Borrelia afzelii ACA-1]
Length = 255
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 22/128 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------TDDFWQKMDPDG 50
++ D + G +I GDFN I D +
Sbjct: 127 VENLIDSFVNDGKNIIICGDFNIAHTEIDLISPDSNRDSPGYYIEETTWLDSFLNKGYVD 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +E R ++ F+++ F + L + S
Sbjct: 187 TFRIFNKEPGYYTWWSYRTRAREKNIGW--RIDYFIVNEFFKRN--VKKSLILDKVMGSD 242
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 243 HCPVFLEL 250
>gi|269796800|ref|YP_003316255.1| exodeoxyribonuclease III [Sanguibacter keddieii DSM 10542]
gi|269098985|gb|ACZ23421.1| Exodeoxyribonuclease III [Sanguibacter keddieii DSM 10542]
Length = 263
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 11/127 (8%), Positives = 29/127 (22%), Gaps = 20/127 (15%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFWQKMDPDGL 51
+ W + + GD+N D ++ +
Sbjct: 137 QSWVEA--DPQAKVALVGDWNVAPRDTDVWDMAVFEGQTHVSQPERDAFAAFEGAGYTEV 194
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F E + + D + ++ + + + S H
Sbjct: 195 SREFVPEDRKYTYWDYQQLRFPKNQGLRIDFAYTSPALTSAVTGVEIDRDERKGKGASDH 254
Query: 112 CPLTIEY 118
P+ ++
Sbjct: 255 VPVIVDI 261
>gi|258626823|ref|ZP_05721630.1| exodeoxyribonuclease III [Vibrio mimicus VM603]
gi|258580870|gb|EEW05812.1| exodeoxyribonuclease III [Vibrio mimicus VM603]
Length = 268
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/142 (9%), Positives = 28/142 (19%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q L + + V+ GD N +
Sbjct: 126 KRQFYRDLMTYLREHRSNTERLVVMGDINISPLDLDIGIGEANRKRWLQTGKCSFQPEER 185
Query: 39 -TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ E + R++ D + D + +
Sbjct: 186 EWLQTLMDWGLVDTFRQLHPEVSDQFSWFDYRSRGFDDNRGLRIDVILATPTLAETCQEA 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRGIDKPSDHAPIWAIF 267
>gi|302534940|ref|ZP_07287282.1| exodeoxyribonuclease III [Streptomyces sp. C]
gi|302443835|gb|EFL15651.1| exodeoxyribonuclease III [Streptomyces sp. C]
Length = 267
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 36/132 (27%), Gaps = 20/132 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + + G V+ GD+N + + +
Sbjct: 134 LGELKARAAADGREVVVCGDWNICHQEADLKNWKTNRKNAGFLPEEREWLGKVYAEAGYV 193
Query: 50 GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + E R ++ + D + + V +T +
Sbjct: 194 DVVRGLHPDTEGPYSWWSYRGRAFDNDAGWRIDLQVASPGLAAKAVKAFVERAETHPERW 253
Query: 109 STHCPLTIEYDF 120
S H P+T+ Y+
Sbjct: 254 SDHAPVTVVYEL 265
>gi|330446636|ref|ZP_08310288.1| exodeoxyribonuclease III [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490827|dbj|GAA04785.1| exodeoxyribonuclease III [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 268
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 33/135 (24%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINS---------------------IGDTDDFWQKMD 47
L + + ++ GD N ++ Q +
Sbjct: 133 LMNYLNTAHTNDEELIVMGDINISPIDLDIGIGPANAKRWLKTGKCSFQPIEREWLQTLL 192
Query: 48 PDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
G + F Q + R+K +D + D + V D
Sbjct: 193 DWGFIDTFRQLHPTVDDKFSWFDYRSKGFVDNRGLRIDVILATPSLAERCVESDIDYELR 252
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 253 GIEKPSDHAPIWSTF 267
>gi|325687087|gb|EGD29110.1| endonuclease/exonuclease/phosphatase [Streptococcus sanguinis SK72]
Length = 749
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 9/119 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + + FV+ GDFN S ++ +
Sbjct: 554 EQAKILNSFVQEGLRQNPNLKFVLTGDFNDFEFSETAKALAGNELINLMQEHDVA---DR 610
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + SLD I ++ + I + + S H P+ ++ DF
Sbjct: 611 YSYFYRGSNQSLDNIFISKNLAGKAVFAPVHI----NASFMEEHGRASDHDPVVVQLDF 665
>gi|325272311|ref|ZP_08138717.1| exonuclease III [Pseudomonas sp. TJI-51]
gi|324102557|gb|EGB99997.1| exonuclease III [Pseudomonas sp. TJI-51]
Length = 270
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/138 (9%), Positives = 31/138 (22%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ + + + P ++ GD N + +
Sbjct: 133 LQVLLESQFRNDQPVLVMGDMNISPQDCDIGIGPDNAKRWLKTGKCSFLPEEREWMERLK 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
+ + R++ D + ++ I +
Sbjct: 193 GWGLVDSFRHLYPDVNDRFSWFDYRSRGFEDEPKRGLRIDLIMASHALVPRIKAAGVDYE 252
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 253 LRGMEKPSDHAPIWLELS 270
>gi|325269387|ref|ZP_08136004.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
gi|324988308|gb|EGC20274.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
Length = 249
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 29/126 (23%), Gaps = 26/126 (20%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
W D+K P V+ GD N I + + +
Sbjct: 131 HWLDEK----KPVVVCGDMNVAHEEIDIKNPKTNRRNAGFTDEEREKMTQLLDSGFIDTF 186
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E+ + R ++ D + S HC
Sbjct: 187 RSLYPEQVTYSWWSYRFRARERNTGWRIDYFLISERLRDRLEDAKIHTEIMG----SDHC 242
Query: 113 PLTIEY 118
P+ ++
Sbjct: 243 PIEVDL 248
>gi|251779644|ref|ZP_04822564.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|243083959|gb|EES49849.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 258
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 34/123 (27%), Gaps = 9/123 (7%)
Query: 5 QGEW-----LKKWAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
Q L ++ ++ K +P +I GDFN NS + +
Sbjct: 139 QARAYELKKLSEFIKKEQEKEELPLIIMGDFNSNPNSKLIKEFIN---GDVFNKRLVAVQ 195
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ K + + F I+ + + S H PL E
Sbjct: 196 DKKKELYNKATMGNFKNKEKGSHIDYIFVSEEFEIIDVEIVKYNVNGKYPSDHYPLMAEI 255
Query: 119 DFE 121
+
Sbjct: 256 SIK 258
>gi|86146435|ref|ZP_01064758.1| exodeoxyribonuclease III [Vibrio sp. MED222]
gi|85835698|gb|EAQ53833.1| exodeoxyribonuclease III [Vibrio sp. MED222]
Length = 268
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 26/137 (18%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L + + ++ GD N I
Sbjct: 131 KDLMTYLNDYHNKDEQVIVMGDINISPTDIDIGIGEPNAKRWLKTGKCSFQPEEREWLKT 190
Query: 43 WQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
E + R+K +D + D +
Sbjct: 191 LMDWGFVDSFRLLHPEVNDQYSWFDYRSKGFVDNRGLRIDVVLATQKLADKCTEAGIDYE 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 251 LRGIEKPSDHAPIWSTF 267
>gi|316933480|ref|YP_004108462.1| exodeoxyribonuclease III Xth [Rhodopseudomonas palustris DX-1]
gi|315601194|gb|ADU43729.1| exodeoxyribonuclease III Xth [Rhodopseudomonas palustris DX-1]
Length = 256
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGL 51
+ L + A +K+G P V+AGDFN + + G
Sbjct: 126 KRLNRHAATLLKSGAPVVLAGDFNVVPTPADIYPTKSWDKDALVQPAPRKLFAALLRQGW 185
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ K + D+ + + +
Sbjct: 186 TDALRHCHPDDAPYTFWSYWRKRFERDAGLRIDHLLLDPSLALRLKRAGVDRKVRAAPEA 245
Query: 109 STHCPLTIEYD 119
S H P I D
Sbjct: 246 SDHAPAWIMID 256
>gi|90021640|ref|YP_527467.1| exonuclease III [Saccharophagus degradans 2-40]
gi|89951240|gb|ABD81255.1| Exodeoxyribonuclease III [Saccharophagus degradans 2-40]
Length = 272
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 32/139 (23%), Gaps = 28/139 (20%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQKM 46
L+ + K V+ GD N + + + +
Sbjct: 133 LQAHIEASYKPSDLLVVMGDMNISHTDLDIGIGESNRKRWLKDGKCSFLPEEREWLDKLL 192
Query: 47 DPDGLLIRFPQ----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSD 100
+ E+E R+K L + + S
Sbjct: 193 GWGLVDTYRQTNPNLEEEQYSWFDYRSKGFEREPKRGLRIDLILASTALAQHSVASGIDY 252
Query: 101 LDTRRSKLSTHCPLTIEYD 119
K S HCP+ E+
Sbjct: 253 DIRGMEKASDHCPIWTEFS 271
>gi|329945926|ref|ZP_08293613.1| putative exodeoxyribonuclease III [Actinomyces sp. oral taxon 170
str. F0386]
gi|328528374|gb|EGF55352.1| putative exodeoxyribonuclease III [Actinomyces sp. oral taxon 170
str. F0386]
Length = 277
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 33/133 (24%), Gaps = 21/133 (15%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------------FWQKM 46
+ +G ++AGD N + F
Sbjct: 145 RMADLLAAARNSGPQVLMAGDLNVVRSERDIKSWKPNHNKIAGVMDEEIAHLEGWFSSGW 204
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ +E+ +R K+ + D + + S S
Sbjct: 205 VDASRRLVGDEEQGPYTWWSQRGKAFDNNAGWRIDYQVITPALAERARSVAVDRAPDYAS 264
Query: 107 KLSTHCPLTIEYD 119
+ S H PL IEY
Sbjct: 265 RWSDHAPLVIEYS 277
>gi|323497693|ref|ZP_08102709.1| exonuclease III [Vibrio sinaloensis DSM 21326]
gi|323317276|gb|EGA70271.1| exonuclease III [Vibrio sinaloensis DSM 21326]
Length = 268
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 34/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q + L + + V+ GD N
Sbjct: 126 KRQFYKDLMTYLNDHHSNDEQLVVMGDINISPLDADIGIGEPNRKRWLKTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ + + G + F Q R+K D + D + +
Sbjct: 186 EWLKTLLDWGFVDTFRQIHPDANDRFSWFDYRSKGFPDNRGLRIDVVLATAKLAEKCIES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
D K S H P+ +
Sbjct: 246 DIDYELRGIEKPSDHAPIWSTF 267
>gi|300743782|ref|ZP_07072802.1| exodeoxyribonuclease III [Rothia dentocariosa M567]
gi|300380143|gb|EFJ76706.1| exodeoxyribonuclease III [Rothia dentocariosa M567]
Length = 275
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 31/129 (24%), Gaps = 20/129 (15%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM------DPDGLLIRFPQE------- 58
+ + +I GD N + + + + +F E
Sbjct: 147 RLPELAQHSDHVLIVGDLNVGHTELDIKNWKANQKRAGFLPEERAYFDKFFGEIGYEDVA 206
Query: 59 -------KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
R K+ + D + V + + S H
Sbjct: 207 RKLAGEVPGPYTWWSYRGKAFDNDAGWRIDYHMATPALAAKAVEATVDRAASYDERFSDH 266
Query: 112 CPLTIEYDF 120
PL ++Y F
Sbjct: 267 APLVVDYQF 275
>gi|308233639|ref|ZP_07664376.1| exodeoxyribonuclease III Xth [Atopobium vaginae DSM 15829]
gi|328944401|ref|ZP_08241863.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
gi|327490985|gb|EGF22762.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
Length = 259
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 37/140 (26%), Gaps = 25/140 (17%)
Query: 2 LSQQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------- 49
L ++ EW K + + + P + GDFN I + +
Sbjct: 124 LDERMEWDKAYREFLVGLDAQKPVITCGDFNVAHQEIDLKNPASNHENAGFSDEERAGFS 183
Query: 50 --------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ + R +S FL+ N + S
Sbjct: 184 SLLGAGFTDTFRSAHPTLEGAYSWWSYRMRSRERNAGW--RIDYFLVSNRIANT--VTSS 239
Query: 101 LDTRRSKLSTHCPLTIEYDF 120
S HCP+ +E +
Sbjct: 240 AIYNEIYGSDHCPVGLELEL 259
>gi|182438103|ref|YP_001825822.1| putative exodeoxyribonuclease [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178466619|dbj|BAG21139.1| putative exodeoxyribonuclease [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 271
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 34/131 (25%), Gaps = 20/131 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L+ + G V+ GD+N + +
Sbjct: 140 LQGLKARAAADGREVVVCGDWNIAHREADLKNWKANRKSSGFLPEERAWLTRVLEEAAYV 199
Query: 50 GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + + R ++ + D + + V T +
Sbjct: 200 DVVRALHPDVEGPYSWWSYRGRAFDNDSGWRIDYQMATPGLAGRAVKAWVERAATHGERW 259
Query: 109 STHCPLTIEYD 119
S H P+T+ Y+
Sbjct: 260 SDHAPVTVVYE 270
>gi|51598785|ref|YP_072973.1| exodeoxyribonuclease III [Borrelia garinii PBi]
gi|51573356|gb|AAU07381.1| exodeoxyribonuclease III [Borrelia garinii PBi]
Length = 255
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 38/128 (29%), Gaps = 22/128 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKI------------NSIGDTDDFWQKMDP------DG 50
++ D + G VI GDFN +S G + +D
Sbjct: 127 VENLIDSLVNGGKNVVICGDFNIAHTKIDLISPDSNRDSPGYYIEETTWLDSFLNKGYVD 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +E R ++ F+++ F + L + S
Sbjct: 187 TFRIFNKEPGYYTWWSYRTRARERNMGW--RIDYFVVNEFFKRN--VKKSLILDKVMGSD 242
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 243 HCPVFLEL 250
>gi|116493341|ref|YP_805076.1| exonuclease III [Pediococcus pentosaceus ATCC 25745]
gi|116103491|gb|ABJ68634.1| Exonuclease III [Pediococcus pentosaceus ATCC 25745]
Length = 251
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 33/132 (25%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------ 48
+ + + DQ + P + GD N I +D +
Sbjct: 124 DAFRAYIDQ-LNQHKPVIFCGDLNVAHQEIDLKNDKTNHKNAGFTDEERNKFTQLLNSGF 182
Query: 49 -DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D +P ++ R + + D +
Sbjct: 183 TDTYRYFYPSKEGVYSWWSYRFNARANNAGWRIDYFVSSKALDQKLTDAQIHTEIFG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ ++ D
Sbjct: 240 -SDHCPVELDLD 250
>gi|221194898|ref|ZP_03567954.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
gi|221184801|gb|EEE17192.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
Length = 281
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 29/130 (22%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + + + P + GDFN I + +
Sbjct: 157 RDFIAE-LSAQKPLITCGDFNVAHTEIDLKNPSSNHKNAGFSDEERESFTKLLDAGFTDT 215
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + R + + D + I + S
Sbjct: 216 FRYRHPDVTGAYSWWSYRFNARKNNAGWRIDYFLVSNRIAQQITGAAILNE----VYGSD 271
Query: 111 HCPLTIEYDF 120
HCP+ + +
Sbjct: 272 HCPVELTIEL 281
>gi|94309094|ref|YP_582304.1| exodeoxyribonuclease III (xth) [Cupriavidus metallidurans CH34]
gi|93352946|gb|ABF07035.1| Exodeoxyribonuclease III [Cupriavidus metallidurans CH34]
Length = 258
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 36/143 (25%), Gaps = 28/143 (19%)
Query: 3 SQQG-----EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------- 49
QQ E + +G V+ GD N I + +
Sbjct: 119 RQQAKFRFMEAFLPHLLELKASGREIVLCGDVNIAHKEIDIKNWKGNLKNSGFLPEERAW 178
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ + E R ++ D + + +
Sbjct: 179 IGELFDNHGYVDVFRQLDPRPEQYTWWSNRGQAYAKNVGWRIDYHLTTAKIAATAKATSI 238
Query: 99 SDLDTRRSKLSTHCPLTIEYDFE 121
+ K S H PL+I+YDF
Sbjct: 239 ----YKDEKFSDHAPLSIDYDFP 257
>gi|13540877|ref|NP_110565.1| exonuclease III [Thermoplasma volcanium GSS1]
gi|14324259|dbj|BAB59187.1| exodeoxyribonuclease [Thermoplasma volcanium GSS1]
Length = 252
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 30/121 (24%), Gaps = 22/121 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD--GLLIRFPQE 58
++ P +I GDFN I Q + F +
Sbjct: 135 LRKKKPLIICGDFNVAHEEIDIARPKDNEHNAGFTIEERTWMSQFLSSGYVDTFRLFTTD 194
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + F++ + ++ K S H P+ +E
Sbjct: 195 GGHYSWWSYRFNAREKNIGW--RIDYFVVSDDIKDK--VKASRILENVKGSDHAPVELEI 250
Query: 119 D 119
D
Sbjct: 251 D 251
>gi|225848729|ref|YP_002728893.1| exodeoxyribonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
gi|225643820|gb|ACN98870.1| exodeoxyribonuclease III [Sulfurihydrogenibium azorense Az-Fu1]
Length = 264
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 12/129 (9%), Positives = 27/129 (20%), Gaps = 21/129 (16%)
Query: 12 WADQKIK-TGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPD---GLL 52
+ + ++ GD N + D + +
Sbjct: 133 FLKENFDVNNQKVILLGDLNIALEDKDVYDPILLKDSIGTMPEERELLRNLLDLGFIDSF 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLST 110
+K + + D + + RR K S
Sbjct: 193 RFLYPDKIQFTWWDYIGGAIWKNEGMRIDYILISKPLVKYLKDVEVDLWPRRRRDPKPSD 252
Query: 111 HCPLTIEYD 119
H P+ ++
Sbjct: 253 HAPVIATFE 261
>gi|19553934|ref|NP_601936.1| exonuclease III [Corynebacterium glutamicum ATCC 13032]
gi|62391577|ref|YP_226979.1| exodeoxyribonuclease III [Corynebacterium glutamicum ATCC 13032]
gi|145296740|ref|YP_001139561.1| hypothetical protein cgR_2644 [Corynebacterium glutamicum R]
gi|21325513|dbj|BAC00135.1| Exonuclease III [Corynebacterium glutamicum ATCC 13032]
gi|41326919|emb|CAF20763.1| EXODEOXYRIBONUCLEASE III [Corynebacterium glutamicum ATCC 13032]
gi|140846660|dbj|BAF55659.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 263
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 18/127 (14%)
Query: 9 LKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
L+ + ++ V+ GDFN I D + + GL
Sbjct: 136 LRNYVIDTLEYRPEEKLVLLGDFNIAPTDIDVWDIAAFEGKTHVTEPERAAFDGLIEAGL 195
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ + L + D + + + + + S H
Sbjct: 196 -KETTPGPGTYTYWDYKGARFLKGEGMRIDFQLASPALAATAGETFVDVEERSGTGASDH 254
Query: 112 CPLTIEY 118
P+ ++Y
Sbjct: 255 APVIVDY 261
>gi|148245026|ref|YP_001219720.1| exodeoxyribonuclease III [Candidatus Vesicomyosocius okutanii HA]
gi|146326853|dbj|BAF61996.1| exodeoxyribonuclease III [Candidatus Vesicomyosocius okutanii HA]
Length = 256
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 12/128 (9%), Positives = 33/128 (25%), Gaps = 23/128 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------------GLL 52
+ + +G +I GD N + + +
Sbjct: 133 YLQELKISGRKVIICGDMNIVHQERDIKNWKANQKNSGCLPEERAWLDKLFFKVGFIDGF 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
QE + R ++ + ++ + + + + + S H
Sbjct: 193 REVNQEDQQYTWWSNRGQAWANNIGW--RIDYQILTPNLKGKVKNANIY--KNKRFSDHA 248
Query: 113 PLTIEYDF 120
P+ ++Y
Sbjct: 249 PIIMDYQL 256
>gi|77458095|ref|YP_347600.1| exodeoxyribonuclease III [Pseudomonas fluorescens Pf0-1]
gi|77382098|gb|ABA73611.1| putative exodeoxyribonuclease [Pseudomonas fluorescens Pf0-1]
Length = 264
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 33/130 (25%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGL 51
E L K+A + P V+AGD+N + + + +Q++ G
Sbjct: 129 ERLIKYARDLQSSDHPVVLAGDYNVVPTDLDIYNTRSWLKDALLQPESRECYQRLLDQGW 188
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
E + + D+ S +
Sbjct: 189 TDSLRHLYPEDRLYTFWDYFRQHWQKNSGLRIDHLLLNPTLSPYLHEAGVDAWVRNEPHA 248
Query: 109 STHCPLTIEY 118
S H P I
Sbjct: 249 SDHAPTWIRI 258
>gi|289549078|ref|YP_003474066.1| exodeoxyribonuclease III Xth [Thermocrinis albus DSM 14484]
gi|289182695|gb|ADC89939.1| exodeoxyribonuclease III Xth [Thermocrinis albus DSM 14484]
Length = 261
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 27/134 (20%), Gaps = 20/134 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDP 48
+ ++ + ++ GD N + I D +
Sbjct: 128 QQFYQFLAENFSPEDKIILLGDMNVALEDIDVYDPVLLRDTIGTMEEERSALRKILEWGF 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDLDTRRS 106
K + + D S V D R
Sbjct: 188 VDTFRYLYPNKVQFTWWDYIGGAVWKDQGMRIDYILVTKPLLPSVRDVYVDMWARKRRSP 247
Query: 107 KLSTHCPLTIEYDF 120
K S H P+ +
Sbjct: 248 KPSDHAPVVCLLEL 261
>gi|266623165|ref|ZP_06116100.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
gi|288865076|gb|EFC97374.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
Length = 251
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 32/132 (24%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ ++ ++ P + GD N I + + +
Sbjct: 125 DAFLRYLKG-LEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTDLLDAGF 183
Query: 50 -GLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++E R + D +VS D
Sbjct: 184 IDTFRWFYPDREEIYSWWSYRFSARSKNAGWRIDYFCVSEALKDRLVSADIHTEVLG--- 240
Query: 108 LSTHCPLTIEYD 119
S HCP+ + +
Sbjct: 241 -SDHCPVELVIE 251
>gi|312961749|ref|ZP_07776247.1| exodeoxyribonuclease III [Pseudomonas fluorescens WH6]
gi|311284008|gb|EFQ62591.1| exodeoxyribonuclease III [Pseudomonas fluorescens WH6]
Length = 270
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 13/144 (9%), Positives = 27/144 (18%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ E L+ + + V+ GD N
Sbjct: 127 QRFYEDLQHLLESQFSNDQALVVMGDVNISPEDCDIGIGADNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVS 95
+ + + R++ D + +
Sbjct: 187 WMARLKNWGLVDSFRHLNPDVTDRFSWFDYRSRGFEDEPKRGLRIDVIMASTGLVHRVKD 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 247 AGVDYDLRGLEKPSDHAPIWLELS 270
>gi|254818951|ref|ZP_05223952.1| exodeoxyribonuclease III [Mycobacterium intracellulare ATCC 13950]
Length = 268
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 30/139 (21%), Gaps = 25/139 (17%)
Query: 2 LSQQGE-WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------DFWQKMDP 48
L E WL+ G +AGD+N + +
Sbjct: 136 LRDSAEGWLRD------DPGAAIALAGDWNIAPQDDDVWSMEFFAGATHVSAPERRAFNA 189
Query: 49 ------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
L+ F + D + + +
Sbjct: 190 IVEAQFTDLVRPFAPGPGVYTYWDYTRLRFPKRQGMRIDFILGSPALASRVTDARIDREE 249
Query: 103 TRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ +
Sbjct: 250 RKGKAASDHAPVLVDLRVD 268
>gi|221120309|ref|XP_002161039.1| PREDICTED: similar to APEX nuclease (multifunctional DNA repair
enzyme) 1 [Hydra magnipapillata]
Length = 384
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 20/126 (15%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
K + + +K P ++ GDFN I + + + DG +
Sbjct: 260 KNYVGE-LKKKKPVIMCGDFNVAHTEIDIANPNSNKRNAGFTEEERSDFTALLEDGYIDT 318
Query: 55 FP--QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
F +++ + F++ + S HC
Sbjct: 319 FRKLNPEKTGAYTFWTYMMNARSKNKGWRLDYFIVTKDIEDDIC--DSVIRSSVMGSDHC 376
Query: 113 PLTIEY 118
P+ +
Sbjct: 377 PIVLNL 382
>gi|320528523|ref|ZP_08029680.1| exodeoxyribonuclease III [Solobacterium moorei F0204]
gi|320131109|gb|EFW23682.1| exodeoxyribonuclease III [Solobacterium moorei F0204]
Length = 251
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 23/132 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E L+K + + P + GD N I + +P
Sbjct: 125 EMLRKHLME-LDKKKPVIYTGDLNVAHEEIDLKNPATNHKNPGFSDEERAAMTKLLDSGF 183
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + R K+ FL+ +++ Q L ++
Sbjct: 184 SDTFRELYPDTQKFSWWSYRMKARERNVGW--RIDYFLVSE--RLLANVQDALIFDETEG 239
Query: 109 STHCPLTIEYDF 120
S HCP+ + +
Sbjct: 240 SDHCPVGLNINL 251
>gi|255578467|ref|XP_002530098.1| ap endonuclease, putative [Ricinus communis]
gi|223530409|gb|EEF32297.1| ap endonuclease, putative [Ricinus communis]
Length = 486
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 29/129 (22%), Gaps = 24/129 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + + ++ P ++ GD N I + + +
Sbjct: 361 LSNYMKE-LEKSKPVILNGDLNCAHQEIDIYNPAGNRRNAGFTDEERQSFETNFLSRGFV 419
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + R+ FL+ S S
Sbjct: 420 DSFRKQHPDVVGYTYWGYRHGGRKTNKGW--RLDYFLVSESI--SDQVHDSYIVPDVTGS 475
Query: 110 THCPLTIEY 118
HCP+ +
Sbjct: 476 DHCPIGLVL 484
>gi|218781643|ref|YP_002432961.1| exodeoxyribonuclease III Xth [Desulfatibacillum alkenivorans AK-01]
gi|218763027|gb|ACL05493.1| exodeoxyribonuclease III Xth [Desulfatibacillum alkenivorans AK-01]
Length = 253
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 41/131 (31%), Gaps = 23/131 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ L K+A+ + V+ GD+N I + + +P
Sbjct: 128 QTLHKFANA-LGEKKSVVLCGDYNVAHKPIDLANPKQNEQNPGYSPEERAWMDEFIGSGY 186
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F QE ++ R + D + + + + +
Sbjct: 187 VDAFRMFNQEPDNYTWWSYRFNARAKNIGWRIDYFCVDEKSKGRVKNAEILNE----VMG 242
Query: 109 STHCPLTIEYD 119
S HCP++++++
Sbjct: 243 SDHCPVSLDFE 253
>gi|333026371|ref|ZP_08454435.1| putative exodeoxyribonuclease III [Streptomyces sp. Tu6071]
gi|332746223|gb|EGJ76664.1| putative exodeoxyribonuclease III [Streptomyces sp. Tu6071]
Length = 267
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 34/134 (25%), Gaps = 22/134 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------GLLIRFPQEKES 61
LK+ ++ G ++ GD+N + + + L
Sbjct: 134 LKELRERAAAEGREVLVCGDWNIAHTEADLKNWRGNRKNAGFLPEEREWLSRVLDPADGG 193
Query: 62 T---------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
R ++ + D + + + T
Sbjct: 194 YVDVVRAQHAGVEGPYSWWSYRGRAFDNDTGWRIDYHMASAGLAGRALKAEVERAATHEE 253
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+T+ Y+
Sbjct: 254 RWSDHAPVTVTYEM 267
>gi|329890230|ref|ZP_08268573.1| exodeoxyribonuclease III [Brevundimonas diminuta ATCC 11568]
gi|328845531|gb|EGF95095.1| exodeoxyribonuclease III [Brevundimonas diminuta ATCC 11568]
Length = 261
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 34/133 (25%), Gaps = 18/133 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ L+ A + + P + GD+N + + + +
Sbjct: 128 QRLQNHARELLALEEPLALCGDYNVIPEAEDAKNPAAWAEDALFQPESREAFRALKWLGL 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + + I D + + + K
Sbjct: 188 ADSHELGREPAGTFTFWDYQAGAWQRNHGIRIDFALLSPHAADRFRAIETHREARDMEKP 247
Query: 109 STHCPLTIEYDFE 121
S H P+ ++ D E
Sbjct: 248 SDHVPVVVDLDLE 260
>gi|294141585|ref|YP_003557563.1| exodeoxyribonuclease III [Shewanella violacea DSS12]
gi|293328054|dbj|BAJ02785.1| exodeoxyribonuclease III [Shewanella violacea DSS12]
Length = 268
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 31/142 (21%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q + L + ++ I GD N +
Sbjct: 126 KRQFYKDLMTYLNENHTPDEDIAIIGDINISPMDLDIGIGEPNAKRWLRTGKCSFQPEER 185
Query: 39 -TDDFWQKMDPDGLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
E+ R+K +D + D + +V
Sbjct: 186 EWLKTLMDWGLVDTFRELHPERTERYSWFDYRSKGFVDNRGLRIDVVLATKSLNERLVES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
D K S H P+ +
Sbjct: 246 DVDYDLRAIEKPSDHAPIWSSF 267
>gi|257070188|ref|YP_003156443.1| exodeoxyribonuclease III Xth [Brachybacterium faecium DSM 4810]
gi|256561006|gb|ACU86853.1| exodeoxyribonuclease III Xth [Brachybacterium faecium DSM 4810]
Length = 308
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 34/135 (25%), Gaps = 21/135 (15%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP----------------- 48
L + G F++ GD N + +
Sbjct: 174 ARHLTRTRRAAAAQGRQFLLMGDLNIAHTRQDLAAWRRNQNNDGFLPEEREWLGAQLSPR 233
Query: 49 ---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
D + PQE +S D + S + + R
Sbjct: 234 TLVDVVRRLHPQEDGPYSWWSWLGQSFAKDAGWRIDYHLATPRLARSALRAEVDRE-VRG 292
Query: 106 SKLSTHCPLTIEYDF 120
+LS H P+ ++YD
Sbjct: 293 VRLSDHAPVVVDYDL 307
>gi|261400777|ref|ZP_05986902.1| exodeoxyribonuclease III [Neisseria lactamica ATCC 23970]
gi|269209377|gb|EEZ75832.1| exodeoxyribonuclease III [Neisseria lactamica ATCC 23970]
Length = 259
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDNPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|189460159|ref|ZP_03008944.1| hypothetical protein BACCOP_00795 [Bacteroides coprocola DSM 17136]
gi|189433149|gb|EDV02134.1| hypothetical protein BACCOP_00795 [Bacteroides coprocola DSM 17136]
Length = 253
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 35/133 (26%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
E +K+ Q + P ++ GD N I + +Q + G
Sbjct: 126 EDFRKYLLQ-LDRQKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQLLLDAGF 184
Query: 52 LIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ F + R K+ D + +
Sbjct: 185 IDTFRHFYPTQENIYSWWSYRFKAREKNAGWRIDYFLASSRIADKLQDAKIHTEIFG--- 241
Query: 108 LSTHCPLTIEYDF 120
S HCP+ + ++
Sbjct: 242 -SDHCPVEVTINW 253
>gi|309379305|emb|CBX22078.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 259
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHTLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDNPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|305680645|ref|ZP_07403453.1| putative exodeoxyribonuclease III [Corynebacterium matruchotii ATCC
14266]
gi|305660176|gb|EFM49675.1| putative exodeoxyribonuclease III [Corynebacterium matruchotii ATCC
14266]
Length = 298
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 21/133 (15%)
Query: 7 EWLKKWA-----DQKIKTGIPFVIAGDFNRKINSIGDTDDFW-------------QKMDP 48
+ L + D + + P V+ GDFN D
Sbjct: 132 DALARHVEDQAGDPEQPSSQPLVLGGDFNIAPTDANVWDITAFIDHTHVTEAERQAFAGL 191
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + +F + + +
Sbjct: 192 IEAGLTVTSPTSGYSYWDYKAGRFPKNEGM---LIDFQLARGLHATGSFIDVAERSGTGA 248
Query: 109 STHCPLTIEYDFE 121
S H P+ ++YD++
Sbjct: 249 SDHAPVVVDYDYD 261
>gi|257470580|ref|ZP_05634670.1| exodeoxyribonuclease III Xth [Fusobacterium ulcerans ATCC 49185]
gi|317064786|ref|ZP_07929271.1| exodeoxyribonuclease III Xth [Fusobacterium ulcerans ATCC 49185]
gi|313690462|gb|EFS27297.1| exodeoxyribonuclease III Xth [Fusobacterium ulcerans ATCC 49185]
Length = 253
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 29/122 (23%), Gaps = 23/122 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ P +I GD N I + + + F
Sbjct: 132 KLDKLKPVIICGDLNVAHQEIDLKNPKSNRKNAGFSDEERAKFTELLKNGFVDSFRHFYP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
E + R + + D + + + S HCP+ +
Sbjct: 192 ELTGAYSWWSYRFNARKNNAGWRIDYFVVSERLKDIMEGAEIHNETLG----SDHCPVVL 247
Query: 117 EY 118
+
Sbjct: 248 KL 249
>gi|237733965|ref|ZP_04564446.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229383046|gb|EEO33137.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 251
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 29/129 (22%), Gaps = 24/129 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
+ ++ P ++ GD N I + + +
Sbjct: 128 AYLKS-LEKSKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTNLLENGFIDTY 186
Query: 53 IRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++E R + + D I S H
Sbjct: 187 RYLYPDQEGVYSWWSYRFNARKNNAGWRIDYFIVSDCLKEGIKEAFICTDILG----SDH 242
Query: 112 CPLTIEYDF 120
CP+ +E D
Sbjct: 243 CPVGLEIDL 251
>gi|254384957|ref|ZP_05000292.1| exodeoxyribonuclease [Streptomyces sp. Mg1]
gi|194343837|gb|EDX24803.1| exodeoxyribonuclease [Streptomyces sp. Mg1]
Length = 268
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 37/131 (28%), Gaps = 20/131 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L+ ++ G V+ GD+N + + +
Sbjct: 135 LEGLRERAAAEGREVVVCGDWNICHREADLKNWKTNRKNAGFLPEERAWLGEVYDRAGYV 194
Query: 50 GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + E R ++ + D + + V +T +
Sbjct: 195 DVVRALHPDTEGPYSWWSYRGRAFDNDAGWRIDLQVATPGLAARAVKAFVERAETHPERW 254
Query: 109 STHCPLTIEYD 119
S H P+T+ Y+
Sbjct: 255 SDHAPVTVVYE 265
>gi|227874120|ref|ZP_03992326.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
gi|227840032|gb|EEJ50456.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
Length = 254
Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 29/123 (23%), Gaps = 23/123 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
++ P + GD N I + M+ F
Sbjct: 136 LEKKKPVIYCGDLNVAHEEIDLKNPDSNHMNAGFSDEERAKFSRVLDSGYLDSFRHFYPN 195
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+E R K+ D ++S + S HCP+ I
Sbjct: 196 KEEEYSWWSYRTKARDRNVGWRIDYFVVSKQLEKKLLSASIH----QEVMGSDHCPVEIT 251
Query: 118 YDF 120
D
Sbjct: 252 LDL 254
>gi|99035972|ref|ZP_01315016.1| hypothetical protein Wendoof_01000152 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 259
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 30/129 (23%), Gaps = 18/129 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
L + +K +IAGD+N + I D +
Sbjct: 131 LYERMSTLLKNEELTIIAGDYNIAPDEIDVFDSNLLNGQVCFHIREREKLRAILNLGFKD 190
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + S + + D + + D + S
Sbjct: 191 AFRISHPNLQQFTWWHYQGNSLRNNQGMRIDYMLLSPQAVDKLETCYIDDRLRKLENPSD 250
Query: 111 HCPLTIEYD 119
H P+ +
Sbjct: 251 HTPVVCAIE 259
>gi|257783920|ref|YP_003179137.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
gi|257472427|gb|ACV50546.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
Length = 259
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 25/140 (17%)
Query: 2 LSQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------- 49
L ++ EW + + D ++ P + GDFN N I + + +
Sbjct: 124 LDERLEWDQHYRDFLAELSKQKPVITCGDFNVAHNEIDLKNPSSNRQNAGFSDEERESFT 183
Query: 50 --------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ + R + + D + + S
Sbjct: 184 KLLDAGFTDTFRYRHPDITGAYSWWSYRFNARKNNAGWRIDYFLVSDRIAEQVKSASILS 243
Query: 101 LDTRRSKLSTHCPLTIEYDF 120
S HCP+ + +
Sbjct: 244 EIYG----SDHCPIELSIEL 259
>gi|293400493|ref|ZP_06644638.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305519|gb|EFE46763.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 253
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 33/130 (25%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + + +K ++ GD N I + + +
Sbjct: 129 RAYLNA-LKEKKSVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERAKMTTLQQSGFIDS 187
Query: 52 LIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
E+E R K+ D D I S
Sbjct: 188 FRYLYPEQEGIYSWWSYRFKAREKNAGWRIDYFLVSEDAKDKIQEASIHT----DVFGSD 243
Query: 111 HCPLTIEYDF 120
HCP++++ DF
Sbjct: 244 HCPVSLDIDF 253
>gi|262200666|ref|YP_003271874.1| exodeoxyribonuclease III Xth [Gordonia bronchialis DSM 43247]
gi|262084013|gb|ACY19981.1| exodeoxyribonuclease III Xth [Gordonia bronchialis DSM 43247]
Length = 262
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 27/131 (20%), Gaps = 21/131 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW---------------QKMD 47
+ WL ++AGD+N D +
Sbjct: 136 DRSALWLAH------DPAAQIMLAGDWNVAQRDTDVWDPGFFAGKPHVSDAERAAIAAFL 189
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
GL + + + D ++ +
Sbjct: 190 DAGLTDSALPYADGYTFWDYTSLRFPRNEGMRIDYALCSPALDTRVLGATVDRDARKPKG 249
Query: 108 LSTHCPLTIEY 118
S H P+ ++
Sbjct: 250 ASDHAPVIVDL 260
>gi|148255197|ref|YP_001239782.1| exodeoxyribonuclease III [Bradyrhizobium sp. BTAi1]
gi|146407370|gb|ABQ35876.1| Exodeoxyribonuclease III [Bradyrhizobium sp. BTAi1]
Length = 256
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 33/130 (25%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGL 51
+ L + A I+ +P V+AGD+N + ++ + G
Sbjct: 126 KRLHRHAADFIEHDLPVVLAGDYNVAPTPLDIYPTRSWNKDALIQPSSRAAFKALLDQGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + + D+ + + +
Sbjct: 186 CDAIRTLHPDQPMFTFWDYKRNRWPRDAGLRLDHLLLSPQLAPRLTKAGIDRAIRGEAGA 245
Query: 109 STHCPLTIEY 118
S H P I
Sbjct: 246 SDHAPAWIVL 255
>gi|83949536|ref|ZP_00958269.1| endonuclease/exonuclease/phosphatase family protein [Roseovarius
nubinhibens ISM]
gi|83837435|gb|EAP76731.1| endonuclease/exonuclease/phosphatase family protein [Roseovarius
nubinhibens ISM]
Length = 340
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 25/140 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD--------------------TDDFWQ 44
Q WL++ D + G ++ GD N D +
Sbjct: 200 QAVWLRQRIDGHLAAGETLMVMGDMNDGPGLDEYEDLFGRSSVEILLGEGEGALYDPHAR 259
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK-----NFLIDNSFSIVSYDQS 99
L + + + ++ LDY ++ R + + ++
Sbjct: 260 AALTRKLGAIYSTSRFYQPETGRYMQALLDYIMVTRGLRERGAAWRIWHPFDDPDCWNLP 319
Query: 100 DLDTRRSKLSTHCPLTIEYD 119
+L S H P+TI+ D
Sbjct: 320 ELSRALLTASDHYPVTIDLD 339
>gi|319778623|ref|YP_004129536.1| Exodeoxyribonuclease III [Taylorella equigenitalis MCE9]
gi|317108647|gb|ADU91393.1| Exodeoxyribonuclease III [Taylorella equigenitalis MCE9]
Length = 266
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 23/133 (17%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------ 49
W+ ++TG +VI GD+N I + +
Sbjct: 135 WIDAMMRDHVETGHEYVICGDWNMAHKEIDLKNWKSNLKNSGFTPEEREWMNDLLERRGF 194
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ R E + R ++ D + + + + +
Sbjct: 195 VDVFRRLCMEADQYTWWSNRGQAWAKNVGWRIDYQIATPGIATLAKHAEI----YKGQRF 250
Query: 109 STHCPLTIEYDFE 121
S H PLTI+Y+FE
Sbjct: 251 SDHAPLTIDYEFE 263
>gi|313667587|ref|YP_004047871.1| nuclease [Neisseria lactamica ST-640]
gi|313005049|emb|CBN86481.1| putative nuclease [Neisseria lactamica 020-06]
Length = 259
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LETMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHTLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDNPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|260779121|ref|ZP_05888013.1| exodeoxyribonuclease III [Vibrio coralliilyticus ATCC BAA-450]
gi|260605285|gb|EEX31580.1| exodeoxyribonuclease III [Vibrio coralliilyticus ATCC BAA-450]
Length = 268
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/142 (9%), Positives = 30/142 (21%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q + L + + ++ GD N
Sbjct: 126 KRQFYKDLMTYLNDHHNNDEQLIVMGDINISPIDADIGIGEPNRKRWLKTGKCSFQPEER 185
Query: 39 -TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ E ++ R++ D + D + +
Sbjct: 186 EWLKTLMDWGFVDTFRQLHPEVEDRFSWFDYRSRGFDDNRGLRIDVVLATPKLAEKCIES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
D K S H P+ +
Sbjct: 246 DIDYELRGIEKPSDHAPIWSTF 267
>gi|229065513|ref|ZP_04200760.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH603]
gi|228715763|gb|EEL67537.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH603]
Length = 190
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + Q+ T P V+ GD N S + + ++
Sbjct: 75 QLAQEVNHFVQGIQEKNTNAPVVVLGDMNDFEFSKPLEALEGTILKDMLNTV---PKENR 131
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ ++ D +
Sbjct: 132 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLVQIDLK 187
Query: 122 KGN 124
K +
Sbjct: 188 KAS 190
>gi|229131979|ref|ZP_04260843.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST196]
gi|228651483|gb|EEL07454.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST196]
Length = 788
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + Q+ T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNHFVQGIQEKNTNAPVVVLGDMNDFEFSKPLEALEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ ++ D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLVQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|229166011|ref|ZP_04293775.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH621]
gi|228617422|gb|EEK74483.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH621]
Length = 788
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + Q+ T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNHFVQGIQEKNTNAPVVVLGDMNDFEFSKPLEALEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ ++ D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLVQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|10640846|emb|CAC12624.1| probable apurinic/apyrimidinic endonuclease [Thermoplasma
acidophilum]
Length = 241
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 34/121 (28%), Gaps = 18/121 (14%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQEK 59
+++ P +I GDFN I D + +D + K
Sbjct: 123 ELRKKKPLIICGDFNVAHEEIDIARPKDNENNAGFTKQERDWMTKFLDSGYVDTYRIFMK 182
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
E + + I F++ + + S H P+T+E D
Sbjct: 183 EGGHYSWWSYRFNARAKNIGWRIDYFVVSDDIR--DRVKKAEILETVTGSDHAPVTLEVD 240
Query: 120 F 120
Sbjct: 241 L 241
>gi|163938988|ref|YP_001643872.1| endonuclease/exonuclease/phosphatase [Bacillus weihenstephanensis
KBAB4]
gi|163861185|gb|ABY42244.1| Endonuclease/exonuclease/phosphatase [Bacillus weihenstephanensis
KBAB4]
Length = 788
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + Q+ T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNHFVQGIQEKNTNAPVVVLGDMNDFEFSKPLEALEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ ++ D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLVQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|302543032|ref|ZP_07295374.1| exodeoxyribonuclease III [Streptomyces hygroscopicus ATCC 53653]
gi|302460650|gb|EFL23743.1| exodeoxyribonuclease III [Streptomyces himastatinicus ATCC 53653]
Length = 273
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 33/130 (25%), Gaps = 20/130 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
LK+ ++ G ++ GD+N + +
Sbjct: 140 LKELRERAAADGREALVCGDWNIAHQEADLKNWKANRKKSGFLPEERAWLSRVFEEAAYV 199
Query: 50 GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + R ++ + D + + + +
Sbjct: 200 DVVRALHPDVDGPYSWWSYRGRAFDNDAGWRIDYQVATPGLAGRALKAVVERAPAYDQRW 259
Query: 109 STHCPLTIEY 118
S H P+T+ Y
Sbjct: 260 SDHAPVTVTY 269
>gi|326778748|ref|ZP_08238013.1| exodeoxyribonuclease III Xth [Streptomyces cf. griseus XylebKG-1]
gi|326659081|gb|EGE43927.1| exodeoxyribonuclease III Xth [Streptomyces cf. griseus XylebKG-1]
Length = 271
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 34/131 (25%), Gaps = 20/131 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L+ + G V+ GD+N + +
Sbjct: 140 LQGLKARAAADGREVVVCGDWNIAHREADLKNWKANRKSSGFLPEERAWLTRVLEEAAYV 199
Query: 50 GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + + R ++ + D + + V T +
Sbjct: 200 DVVRALHPDVEGPYSWWSYRGRAFDNDSGWRIDYQMATPGLAGRAVKAWVERAATHGERW 259
Query: 109 STHCPLTIEYD 119
S H P+T+ Y+
Sbjct: 260 SDHAPVTVVYE 270
>gi|332666113|ref|YP_004448901.1| exodeoxyribonuclease III Xth [Haliscomenobacter hydrossis DSM 1100]
gi|332334927|gb|AEE52028.1| exodeoxyribonuclease III Xth [Haliscomenobacter hydrossis DSM 1100]
Length = 256
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 31/125 (24%), Gaps = 18/125 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIR 54
KWA + K ++ GD+N D + +
Sbjct: 133 KWAHELQKERPKLIVLGDYNIAHTERDIHDPRGNKNSSGFLPEEREWLSKWFNSGFTDAF 192
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ ++ + ++ S ++ S HCP+
Sbjct: 193 RFLNPDKVEYSWWSFRAGARKNNKGWRIDYQSVSDNLRDNLR--SARQMNEAEHSDHCPV 250
Query: 115 TIEYD 119
+E D
Sbjct: 251 LVELD 255
>gi|254420582|ref|ZP_05034306.1| exodeoxyribonuclease III (xth) subfamily [Brevundimonas sp. BAL3]
gi|196186759|gb|EDX81735.1| exodeoxyribonuclease III (xth) subfamily [Brevundimonas sp. BAL3]
Length = 265
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 30/130 (23%), Gaps = 23/130 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLI 53
+ P V+AGDFN + +L
Sbjct: 135 IVARQDKSRPLVMAGDFNIAPGEGDVFNHRYMSKIVSHTPIEVETLNRLQATGGFADVLR 194
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN----SFSIVSYDQSDLDTRRSKLS 109
E + + + + + + + D + S
Sbjct: 195 DRFPEPQKLASWWSYRAADFRKSNRGLRLDHIWTSPGLTPAVAKDTARIHDDVREWDRPS 254
Query: 110 THCPLTIEYD 119
H P+T++ D
Sbjct: 255 DHAPVTVDLD 264
>gi|218906273|ref|YP_002454107.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus AH820]
gi|218538717|gb|ACK91115.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus AH820]
Length = 352
Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK + ++ + G ++ GD+N+ ++ + +D + K PD L+ +
Sbjct: 226 IRKQQVEYLKAYMNKHYEKGDYVIMGGDWNQLVSDVQLSDPKFVKERPDWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|219685209|ref|ZP_03540029.1| exodeoxyribonuclease III [Borrelia garinii Far04]
gi|219673305|gb|EED30324.1| exodeoxyribonuclease III [Borrelia garinii Far04]
Length = 254
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 22/128 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD--G 50
++ D + G VI GDFN I T + ++
Sbjct: 127 VENLIDSLVNGGKNVVICGDFNIAHTKIDLISPDSNRDSPGYYIEETTWLDRFLNKGYVD 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +E R ++ F+++ F + L + S
Sbjct: 187 TFRIFNKEPGYYTWWSYRTRARERNMGW--RIDYFIVNEFFKRN--VKKSLILDKVMGSD 242
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 243 HCPVFLEL 250
>gi|54293631|ref|YP_126046.1| hypothetical protein lpl0684 [Legionella pneumophila str. Lens]
gi|54296671|ref|YP_123040.1| hypothetical protein lpp0702 [Legionella pneumophila str. Paris]
gi|148360699|ref|YP_001251906.1| exodeoxyribonuclease III [Legionella pneumophila str. Corby]
gi|296106236|ref|YP_003617936.1| exodeoxyribonuclease III [Legionella pneumophila 2300/99 Alcoy]
gi|53750456|emb|CAH11850.1| hypothetical protein lpp0702 [Legionella pneumophila str. Paris]
gi|53753463|emb|CAH14918.1| hypothetical protein lpl0684 [Legionella pneumophila str. Lens]
gi|148282472|gb|ABQ56560.1| exodeoxyribonuclease III [Legionella pneumophila str. Corby]
gi|158512141|gb|ABW69102.1| exodeoxyribonuclease III [Legionella pneumophila]
gi|295648137|gb|ADG23984.1| exodeoxyribonuclease III [Legionella pneumophila 2300/99 Alcoy]
gi|307609445|emb|CBW98939.1| hypothetical protein LPW_07241 [Legionella pneumophila 130b]
Length = 260
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 33/131 (25%), Gaps = 23/131 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E + G +I GD+N I + + M
Sbjct: 128 EQFARHLMNLKNEGRELIICGDYNIAHKKIDLKNWRGNQKNSGFLPEERAWMDELFGSMG 187
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
QE+E R ++ +I Y R ++
Sbjct: 188 FVDAFRVHNQEEEQYTWWSYRARAWEKNVGW--RIDYQVITPGL--TEYVADSRIFREAR 243
Query: 108 LSTHCPLTIEY 118
S H PL IEY
Sbjct: 244 FSDHAPLMIEY 254
>gi|225631175|ref|ZP_03787879.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225591132|gb|EEH12310.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Muscidifurax
uniraptor]
Length = 259
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 30/129 (23%), Gaps = 18/129 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
L + +K +IAGD+N + I D +
Sbjct: 131 LYERMSTLLKNEELTIIAGDYNVAPDEIDVFDSNLLNGQVCFHIREREKLRAILNLGFKD 190
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + S + + D + + D + S
Sbjct: 191 AFRISHPNLQQFTWWHYQGNSLRNNQGMRIDYMLLSPQAVDKLETCYIDDRLRKLENPSD 250
Query: 111 HCPLTIEYD 119
H P+ +
Sbjct: 251 HTPVVCAIE 259
>gi|208435390|ref|YP_002267056.1| exodeoxyribonuclease [Helicobacter pylori G27]
gi|208433319|gb|ACI28190.1| exodeoxyribonuclease [Helicobacter pylori G27]
Length = 250
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+K+ ++ P ++ GD N N I + + +
Sbjct: 127 RKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|196032800|ref|ZP_03100213.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus W]
gi|195994229|gb|EDX58184.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus W]
Length = 352
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK + ++ + G ++ GD+N+ ++ + +D + K PD L+ +
Sbjct: 226 IRKQQVEYLKAYMNKHYEKGDYVIMGGDWNQLVSDVQLSDPKFVKERPDWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|119897775|ref|YP_932988.1| putative extracellular nuclease [Azoarcus sp. BH72]
gi|119670188|emb|CAL94101.1| putative extracellular nuclease [Azoarcus sp. BH72]
Length = 943
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 34/137 (24%), Gaps = 26/137 (18%)
Query: 6 GEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE--KES 61
L W D +I GD N + G ++ + +
Sbjct: 697 ARELAAWLATDPTAAGDGDVLIIGDLNAYAQEDPV-----TALTDAGYTDLVGRDVGRGA 751
Query: 62 TCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQSD---------LDTR 104
V LD+ + + + S++ Y+
Sbjct: 752 YSYVFDGQWGYLDHALASPSLARQVSGVAEWHINADEPSVLDYNTDYKSAAQIAGYYAAD 811
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ I D +
Sbjct: 812 LYRASDHDPVVIGLDLD 828
>gi|319760561|ref|YP_004124499.1| exodeoxyribonuclease III [Candidatus Blochmannia vafer str. BVAF]
gi|318039275|gb|ADV33825.1| exodeoxyribonuclease III [Candidatus Blochmannia vafer str. BVAF]
Length = 274
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/148 (10%), Positives = 32/148 (21%), Gaps = 28/148 (18%)
Query: 1 MLSQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------- 39
+ +Q + LK + +I GD N +
Sbjct: 122 IYKKQFYQNLKNYIQNNYSNESLLLIMGDMNISPTDLDVGIGKKNTDRWIKMGKCAFLPE 181
Query: 40 ------DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI 93
D + Q ++ + + D +
Sbjct: 182 ERQWITDLMNWGLIDIYRSKYPYQN-NRYSWFSYQSNGFKNNRGLRIDLVLVTQPLAHLC 240
Query: 94 VSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + S H P+ ++ D E
Sbjct: 241 TCSGINYDIRNMTHPSDHAPIWVDLDIE 268
>gi|313897464|ref|ZP_07831007.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
gi|312957834|gb|EFR39459.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
Length = 254
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------ 48
+ + + + +T ++ GD N I + + +
Sbjct: 124 DAFRAYLHKLNETKS-VLVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKMSVLLESGF 182
Query: 49 -DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D +P+++ R K+ D D +I
Sbjct: 183 IDSFRYLYPKQEGIYSWWSYRFKAREKNAGWRIDYFLVSEDAKEAIREARIHT----DIY 238
Query: 108 LSTHCPLTIEYD 119
S HCP+++E+D
Sbjct: 239 GSDHCPVSLEFD 250
>gi|307719602|ref|YP_003875134.1| hypothetical protein STHERM_c19260 [Spirochaeta thermophila DSM
6192]
gi|306533327|gb|ADN02861.1| hypothetical protein STHERM_c19260 [Spirochaeta thermophila DSM
6192]
Length = 256
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 37/132 (28%), Gaps = 22/132 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+K+ AD + G +I+GDFN + + +P
Sbjct: 126 CNAVKERADAYVAAGRHVLISGDFNIAHTPLDLARPEANEKNPGYLPEEREWMTYFLSSG 185
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +E R K+ +D F + + +
Sbjct: 186 YVDTFRMFTKEGGHYTWWTYRFKAREKDIGW--RIDYHCVDERFKDK--VKESVILKDVM 241
Query: 108 LSTHCPLTIEYD 119
S HCP+ I D
Sbjct: 242 GSDHCPVKITLD 253
>gi|313109621|ref|ZP_07795568.1| putative nuclease [Pseudomonas aeruginosa 39016]
gi|310882070|gb|EFQ40664.1| putative nuclease [Pseudomonas aeruginosa 39016]
Length = 266
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGL 51
E L + A + +++G P V+AGDFN + D + ++++ G
Sbjct: 129 EHLIRHAAELMESGHPVVLAGDFNVVPSDFDIYDTRSWKKDALLQPESRECFERLLRQGW 188
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ ++ + + D+ + +
Sbjct: 189 VDALRQRFPDRRIYTFWDYFRQHWQRDAGLRIDHLLLSASLADHLEDAGVDRWVRGEEHA 248
Query: 109 STHCPLTIEYD 119
S H P +
Sbjct: 249 SDHAPAWVSLR 259
>gi|71905765|ref|YP_283352.1| AP endonuclease [Dechloromonas aromatica RCB]
gi|71845386|gb|AAZ44882.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Dechloromonas aromatica RCB]
Length = 259
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 21/126 (16%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLIRF 55
G V+ GD+N +I + +++ + R
Sbjct: 136 ALRAEGREIVLCGDWNIAHQAIDLKNWKSNQKNSGFLPEERAWLSRLFEEQGWVDVYRRL 195
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
E C N+ + + ++++ + + S H PL
Sbjct: 196 HPETTDACYTWWSNRGQAWAKNVGWRIDYQIATPGIAVMAVQAEVY--KDERFSDHAPLI 253
Query: 116 IEYDFE 121
I+YDF+
Sbjct: 254 IDYDFK 259
>gi|219684183|ref|ZP_03539127.1| exodeoxyribonuclease III [Borrelia garinii PBr]
gi|219672172|gb|EED29225.1| exodeoxyribonuclease III [Borrelia garinii PBr]
Length = 255
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 22/128 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD--G 50
++ D + G VI GDFN I T + ++
Sbjct: 127 VENLIDSLVNGGKNVVICGDFNIAHTKIDLISPDSNRDSPGYYIEETTWLDRFLNKGYVD 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +E R ++ F+++ F + L + S
Sbjct: 187 TFRIFNKEPGYYTWWSYRTRARERNMGW--RIDYFVVNEFFKRN--VKKSLILDKVMGSD 242
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 243 HCPVFLEL 250
>gi|228917707|ref|ZP_04081248.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228841944|gb|EEM87050.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 352
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK + ++ + G ++ GD+N+ ++ + +D + K PD L+ +
Sbjct: 226 IRKQQVEYLKAYMNKHYEKGDYVIMGGDWNQLVSDVQLSDPKFVKERPDWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDSSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|119469281|ref|ZP_01612220.1| exonuclease III [Alteromonadales bacterium TW-7]
gi|119447145|gb|EAW28414.1| exonuclease III [Alteromonadales bacterium TW-7]
Length = 268
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/142 (11%), Positives = 29/142 (20%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q + L D + V+ GD N +
Sbjct: 126 KRQFYKDLMTHLDTNLTPDQDVVVMGDINISPTDLDIGIGEVNAKRWLKTGKCSFQPEER 185
Query: 39 -TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + R+K LD + D + +
Sbjct: 186 QWLSTLLDWGFKDTFRELYPDVNDQYSWFDYRSKGFLDNRGLRIDVVLATQSLAERCIDS 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRAIDKPSDHAPIWSTF 267
>gi|300780401|ref|ZP_07090257.1| possible exodeoxyribonuclease III [Corynebacterium genitalium ATCC
33030]
gi|300534511|gb|EFK55570.1| possible exodeoxyribonuclease III [Corynebacterium genitalium ATCC
33030]
Length = 260
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 27/122 (22%), Gaps = 14/122 (11%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-----------QKMDPDGLLIRFPQEKE 60
++I P V GD+N D + + L Q
Sbjct: 135 RLAEQIDPSTPQVFCGDYNIAPTDKDVWDRAFFEGKTHVTEPERAAFEALLEAGLNQATH 194
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
K L + + S H P+ ++YD
Sbjct: 195 PEPYSYWDYKGMRFQKGEGMLIDFQLSGLEGAGF---VDTHEREGKGTSDHAPVVVDYDL 251
Query: 121 EK 122
+
Sbjct: 252 TR 253
>gi|118602958|ref|YP_904173.1| exodeoxyribonuclease III [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|118567897|gb|ABL02702.1| exodeoxyribonuclease III [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 256
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 23/128 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------------GLL 52
+ + +G +I GD N + + +
Sbjct: 133 YLQEIKISGRKVIICGDMNIVHQERDIKNWKANQKNSGCLPKERAWLDELFFEVGFIDSF 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
QE+ R ++ + ++ + S + + S H
Sbjct: 193 REVNQEERQYTWWSNRGQAWANNVGW--RIDYQILTPNLKDTIKSVSIY--KDERFSDHA 248
Query: 113 PLTIEYDF 120
PL I Y+
Sbjct: 249 PLIINYNL 256
>gi|297380626|gb|ADI35513.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
Length = 250
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+K+ ++ P ++ GD N N I + + +
Sbjct: 127 RKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|293602414|ref|ZP_06684860.1| exodeoxyribonuclease III [Achromobacter piechaudii ATCC 43553]
gi|292819176|gb|EFF78211.1| exodeoxyribonuclease III [Achromobacter piechaudii ATCC 43553]
Length = 292
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 23/137 (16%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------- 42
L + G W+ + TG FVI GD+N I +
Sbjct: 157 LDRFGPWIDALMHEHKTTGREFVICGDWNIAHKEIDLKNWKGNMKNSGFLPEERAWLTDV 216
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ K + + R ++ + + + + +
Sbjct: 217 FDKRGFVDVFRTIDDRPDQYTWWSNRGQAWAKNVGW--RIDYQIATPGIAARARNVAIY- 273
Query: 103 TRRSKLSTHCPLTIEYD 119
+ + S H PLTI+YD
Sbjct: 274 -KDERFSDHAPLTIDYD 289
>gi|239999924|ref|ZP_04719848.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae 35/02]
gi|240116863|ref|ZP_04730925.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID1]
gi|268595731|ref|ZP_06129898.1| exodeoxyribonuclease [Neisseria gonorrhoeae 35/02]
gi|268602539|ref|ZP_06136706.1| nuclease [Neisseria gonorrhoeae PID1]
gi|293397969|ref|ZP_06642175.1| exodeoxyribonuclease III [Neisseria gonorrhoeae F62]
gi|268549120|gb|EEZ44538.1| exodeoxyribonuclease [Neisseria gonorrhoeae 35/02]
gi|268586670|gb|EEZ51346.1| nuclease [Neisseria gonorrhoeae PID1]
gi|291611915|gb|EFF40984.1| exodeoxyribonuclease III [Neisseria gonorrhoeae F62]
gi|317165222|gb|ADV08763.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae TCDC-NG08107]
Length = 259
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVMHTLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDVPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|198282493|ref|YP_002218814.1| exodeoxyribonuclease III Xth [Acidithiobacillus ferrooxidans ATCC
53993]
gi|198247014|gb|ACH82607.1| exodeoxyribonuclease III Xth [Acidithiobacillus ferrooxidans ATCC
53993]
Length = 255
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 28/130 (21%), Gaps = 22/130 (16%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPD 49
+ + ++ G V GD N +I W
Sbjct: 130 AFLELINARVAAGRAVVFCGDVNTAHQAIDLARPKENARISGFLPEERACLDQWAAAGWV 189
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ +R + D + + T S
Sbjct: 190 DSFRHLHPDAVEYSWWSQRTDARARNIGWRLDYFWIHESLLPRLRGAGIATDVTG----S 245
Query: 110 THCPLTIEYD 119
HCP+ +E D
Sbjct: 246 DHCPVWLELD 255
>gi|182413315|ref|YP_001818381.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
gi|177840529|gb|ACB74781.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
Length = 253
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 28/129 (21%), Gaps = 22/129 (17%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------ 49
+ + K G P V GD N I T+ + +
Sbjct: 128 AFLAFLKKLEKKGKPVVFCGDLNVAHQEIDLTNPKTNRRNAGFTDEERANFSKLLASGFV 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F + + D ++ S S
Sbjct: 188 DTFREFEKGPGHYTWWSQMMNCRARNIGWRVDYFVASEKLKPALKRAWISPEVMG----S 243
Query: 110 THCPLTIEY 118
HCP+ +E
Sbjct: 244 DHCPVGLEL 252
>gi|59802302|ref|YP_209014.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA 1090]
gi|194099736|ref|YP_002002871.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae NCCP11945]
gi|240013129|ref|ZP_04720042.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae DGI18]
gi|240015572|ref|ZP_04722112.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA6140]
gi|240120200|ref|ZP_04733162.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID24-1]
gi|254492721|ref|ZP_05105892.1| nuclease [Neisseria gonorrhoeae 1291]
gi|59719197|gb|AAW90602.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA 1090]
gi|193935026|gb|ACF30850.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae NCCP11945]
gi|226511761|gb|EEH61106.1| nuclease [Neisseria gonorrhoeae 1291]
Length = 259
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHTLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDVPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|15678240|ref|NP_275355.1| exodeoxyribonuclease [Methanothermobacter thermautotrophicus str.
Delta H]
gi|2621258|gb|AAB84718.1| exodeoxyribonuclease [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 257
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 32/126 (25%), Gaps = 22/126 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD------------------TDDFWQKMDPDGLLIR 54
+++ +G +I GDFN I D + +
Sbjct: 136 VNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTFRM 195
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
F + R ++ F ++ F S HCP+
Sbjct: 196 FNSDPGQYTWWSYRTRARERNVGW--RLDYFFVNEEFKGKVKR--SWILSDVMGSDHCPI 251
Query: 115 TIEYDF 120
+E +
Sbjct: 252 GLEIEL 257
>gi|328956310|ref|YP_004373643.1| exodeoxyribonuclease III Xth [Coriobacterium glomerans PW2]
gi|328456634|gb|AEB07828.1| exodeoxyribonuclease III Xth [Coriobacterium glomerans PW2]
Length = 283
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 34/134 (25%), Gaps = 24/134 (17%)
Query: 7 EWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
E + + Q + P V GDFN N I + + +
Sbjct: 154 EAYRAFLKQLERMGDKPVVTCGDFNVAHNEIDLRNPKSNRGNAGFSDEERASFSRLLEAG 213
Query: 50 --GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ +++ R + FL+ +S +
Sbjct: 214 FTDTFRYLYPDVRDAYSWWSYRFHARRTNAGW--RIDYFLVSDSVR--DRIVEATIRQDV 269
Query: 107 KLSTHCPLTIEYDF 120
S HCP+ +
Sbjct: 270 FGSDHCPVELVIAL 283
>gi|312881205|ref|ZP_07741003.1| exonuclease III [Vibrio caribbenthicus ATCC BAA-2122]
gi|309371097|gb|EFP98551.1| exonuclease III [Vibrio caribbenthicus ATCC BAA-2122]
Length = 268
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 34/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q + L + + ++ GD N
Sbjct: 126 KRQFYKDLMTYLNDHHTNDEQLIVMGDINISPIDADIGIGEPNRKRWLKTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ + + GL+ F Q R++ D + D +
Sbjct: 186 EWLKTLLDWGLVDTFRQIHPEVEDRFSWFDYRSRGFDDNRGLRIDVVLATPKLAEKCTES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
D K S H P+ +
Sbjct: 246 DIDYELRGIEKPSDHAPIWSTF 267
>gi|149033629|gb|EDL88427.1| apurinic/apyrimidinic endonuclease 1, isoform CRA_b [Rattus
norvegicus]
Length = 294
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 166 EAFRKFLKD-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGEMLQAVP 224
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ +S ++
Sbjct: 225 LADSFRHLYPNT-AYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 281
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 282 GSDHCPITLYLAL 294
>gi|13162337|ref|NP_077062.1| DNA-(apurinic or apyrimidinic site) lyase [Rattus norvegicus]
gi|1168468|sp|P43138|APEX1_RAT RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|11878235|gb|AAG40859.1|AF309114_1 nuclease APEX [Rattus norvegicus]
gi|624915|dbj|BAA07938.1| APEX nuclease [Rattus norvegicus]
gi|5360709|dbj|BAA82124.1| Apex nuclease [Rattus norvegicus]
gi|50926078|gb|AAH78816.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Rattus
norvegicus]
gi|149033628|gb|EDL88426.1| apurinic/apyrimidinic endonuclease 1, isoform CRA_a [Rattus
norvegicus]
Length = 317
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 189 EAFRKFLKD-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGEMLQAVP 247
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ +S ++
Sbjct: 248 LADSFRHLYPNT-AYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 304
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 305 GSDHCPITLYLAL 317
>gi|325299788|ref|YP_004259705.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
gi|324319341|gb|ADY37232.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
Length = 251
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 24/129 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ +++ + + P ++ GD N I + +M+
Sbjct: 124 DAFRRYLLE-LDAKKPVLVCGDLNVAHKEIDLKNPKTNRMNAGFTDQEREKFQTLLDAGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F E+E R ++ D + + S
Sbjct: 183 IDTFRYFYPEQEGIYSWWSYRFRAREKNAGWRIDYFLASARLAGKLESAAIHTEIFG--- 239
Query: 108 LSTHCPLTI 116
S HCP+ +
Sbjct: 240 -SDHCPVEV 247
>gi|308274119|emb|CBX30718.1| Exodeoxyribonuclease [uncultured Desulfobacterium sp.]
Length = 263
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 32/128 (25%), Gaps = 20/128 (15%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------FWQKMDPD----------GLL 52
+ D G +I+GD+N N I T F +
Sbjct: 138 AYTDSLKNQGKNLIISGDYNTAHNEIDLTHPKPNEKYSGFLRVERDWMDEIIKRGYVDTF 197
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
F EK R + + + + + S HC
Sbjct: 198 RYFYPEKVKYSWWSYRANARKKNVGW--RVDYIFVSRNIIDKGWVKEPFIDNDIFGSDHC 255
Query: 113 PLTIEYDF 120
P+ + +F
Sbjct: 256 PVGLVLEF 263
>gi|228948804|ref|ZP_04111080.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|301056563|ref|YP_003794774.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis CI]
gi|228810861|gb|EEM57206.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|300378732|gb|ADK07636.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus biovar anthracis str. CI]
Length = 352
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK + ++ + G ++ GD+N+ ++ + +D + K PD L+ +
Sbjct: 226 IRKQQVEYLKAYMNKHYEKGDYVIMGGDWNQLVSDVQLSDPKFVKERPDWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|229032715|ref|ZP_04188676.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1271]
gi|228728610|gb|EEL79625.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1271]
Length = 337
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ + G ++ GD+N+ ++ + +D + K P+ L+
Sbjct: 211 IRKQQVEFLKEYMNKHYENGDYVIMGGDWNQLLSDVQLSDPKFVKERPEWLVELPKNFTN 270
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 271 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 327
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 328 NPVSAVFKLK 337
>gi|325129291|gb|EGC52129.1| exodeoxyribonuclease III [Neisseria meningitidis OX99.30304]
gi|325135311|gb|EGC57932.1| exodeoxyribonuclease III [Neisseria meningitidis M0579]
gi|325201282|gb|ADY96736.1| exodeoxyribonuclease III [Neisseria meningitidis M01-240149]
Length = 259
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHTLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDNPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|257457966|ref|ZP_05623125.1| exodeoxyribonuclease III [Treponema vincentii ATCC 35580]
gi|257444679|gb|EEV19763.1| exodeoxyribonuclease III [Treponema vincentii ATCC 35580]
Length = 258
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 22/129 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+ ++ + K G V+ GD+N I + + +P
Sbjct: 130 CAAMLEFCNALQKDGRHIVLCGDYNIAHKPIDLANPKSNEQNPGYLPEERAWMDTFTQAG 189
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F E R + +DN+F + S +
Sbjct: 190 YIDTFRHFCAEPHRYTWWSYRFHAREKNIGW--RIDYHCVDNAFLPNIRESSIMA--DVL 245
Query: 108 LSTHCPLTI 116
S HCP+ +
Sbjct: 246 GSDHCPIKL 254
>gi|257076437|ref|ZP_05570798.1| exodeoxyribonuclease III [Ferroplasma acidarmanus fer1]
Length = 252
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 37/134 (27%), Gaps = 25/134 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ ++ D+ +K P +I GDFN I + +
Sbjct: 126 REILEYMDK-LKAKKPVIITGDFNVAHEEIDIARPKGNEKNAGFTIEERDSMTEILSHGY 184
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F +E R + FL+ ++F + L
Sbjct: 185 VDTYRYFHKEPGHYSWWSYRFNAREKNIGW--RIDYFLVSDNFIGK--VEDSLILENVTG 240
Query: 109 STHCPLTIEYDFEK 122
S H P +E ++
Sbjct: 241 SDHAP--LELILKQ 252
>gi|325915362|ref|ZP_08177679.1| Exodeoxyribonuclease III [Xanthomonas vesicatoria ATCC 35937]
gi|325538409|gb|EGD10088.1| Exodeoxyribonuclease III [Xanthomonas vesicatoria ATCC 35937]
Length = 346
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 29/129 (22%), Gaps = 18/129 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ L + A + P + GDFN D +Q + G
Sbjct: 131 QRLIRHAKTLVGLPHPVALIGDFNVVPTDADIYDPKGWRKDALLQPESRQAYQTLVEQGW 190
Query: 52 LI---RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + D+ + ++ K
Sbjct: 191 TDSLLAVYGDAPIYTFWDYFRQHFARDRGLRIDHLLLNRALAPGLLDAGVDKWVRALEKA 250
Query: 109 STHCPLTIE 117
S H P I
Sbjct: 251 SDHAPTWIS 259
>gi|254460243|ref|ZP_05073659.1| exodeoxyribonuclease III [Rhodobacterales bacterium HTCC2083]
gi|206676832|gb|EDZ41319.1| exodeoxyribonuclease III [Rhodobacteraceae bacterium HTCC2083]
Length = 262
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 29/133 (21%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W ++ GD N D D + D
Sbjct: 133 MRDWFKTNSPRKS--ILVGDLNIAPREDDVWDHKKLLKIVSHTPIEVEHLDDVMKAGDWH 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ E + R K D R + + S K
Sbjct: 191 DVTRADISEGKLYSWWSYRAKDW-DAANKGRRLDHVWATGDIASAAHSSRVLRDARGWEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFATFDL 262
>gi|88608769|ref|YP_506301.1| exodeoxyribonuclease III [Neorickettsia sennetsu str. Miyayama]
gi|88600938|gb|ABD46406.1| exodeoxyribonuclease III [Neorickettsia sennetsu str. Miyayama]
Length = 265
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 12/132 (9%), Positives = 27/132 (20%), Gaps = 21/132 (15%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
+ + + ++ GD N I D +
Sbjct: 135 ARRIHGYL---LNNNDIMLLGGDMNAAPEDIDVYDPVKLDGCTGFHIEERSKLRELLNLG 191
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
K+ R + D+ + ++ S+
Sbjct: 192 LFDTFRMKYPTKQEFSWWDYRGGGLQRNEGMRIDHILASAEGMDHLLDCYILKELRHISR 251
Query: 108 LSTHCPLTIEYD 119
S H P+ +
Sbjct: 252 PSDHVPVVCVLN 263
>gi|315605812|ref|ZP_07880844.1| exodeoxyribonuclease III [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312510|gb|EFU60595.1| exodeoxyribonuclease III [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 271
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 33/131 (25%), Gaps = 18/131 (13%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKM 46
L+ E + W + + GD+N + D D +
Sbjct: 142 LATLAEQGRTWLS---DSQALIALVGDWNVAPHDEDVWDMSVFEGSTHVSRAERDAFAAF 198
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ DG + + + + D + + + +
Sbjct: 199 ERDGWVEVTRDRVTNYTYWDYQKLRFPKNQGMRIDFAYCSAPLAARVTGAHIDRDERKGK 258
Query: 107 KLSTHCPLTIE 117
S H P+ ++
Sbjct: 259 GASDHVPVIVD 269
>gi|89072737|ref|ZP_01159302.1| putative exodeoxyribonuclease III [Photobacterium sp. SKA34]
gi|89051557|gb|EAR57011.1| putative exodeoxyribonuclease III [Photobacterium sp. SKA34]
Length = 268
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 32/135 (23%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINS---------------------IGDTDDFWQKMD 47
L + + ++ GD N ++ Q +
Sbjct: 133 LMNYLNTAHTNDEELIVMGDINISPMDLDIGIGPANAKRWLKTGKCSFQPIEREWLQTLL 192
Query: 48 PDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
G F Q + R+K +D + D + + D
Sbjct: 193 DWGFTDTFRQLHPTVDDKYSWFDYRSKGFVDNRGLRIDVILATPSLAERCIESDVDYELR 252
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 253 GIEKPSDHAPIWSVF 267
>gi|302552034|ref|ZP_07304376.1| exodeoxyribonuclease III [Streptomyces viridochromogenes DSM 40736]
gi|302469652|gb|EFL32745.1| exodeoxyribonuclease III [Streptomyces viridochromogenes DSM 40736]
Length = 274
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 35/133 (26%), Gaps = 22/133 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
LK ++ G ++ GD+N + + +
Sbjct: 141 LKGLRERAAAEGREVLVCGDWNIAHQKADLKNWRGNQKNSGFLPEEREWLGRVLDPADGG 200
Query: 50 --GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
++ + E R ++ + D + V +
Sbjct: 201 YVDVVRALHPDTEGPYSWWSYRGRAFDNDSGWRIDLAVATPRLAARAVKAVVERAASHEE 260
Query: 107 KLSTHCPLTIEYD 119
+ S H P+T+ ++
Sbjct: 261 RWSDHAPVTVVFE 273
>gi|42520813|ref|NP_966728.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42410553|gb|AAS14662.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 259
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 30/129 (23%), Gaps = 18/129 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
L + +K +IAGD+N + I D +
Sbjct: 131 LYERMSTLLKNEELTIIAGDYNIAPDEIDVFDSNLLNGQVCFHIREREKLRAILNLGFKD 190
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + S + + D + + D + S
Sbjct: 191 AFRISHPNLQQFTWWHYQGNSLRNNQGMRIDYMLLSPQAVDKLETCYIDDRLRKLENPSD 250
Query: 111 HCPLTIEYD 119
H P+ +
Sbjct: 251 HTPVVCAIE 259
>gi|224137778|ref|XP_002322649.1| predicted protein [Populus trichocarpa]
gi|222867279|gb|EEF04410.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 28/129 (21%), Gaps = 24/129 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + + ++ P ++ GD N I + K
Sbjct: 303 LSNYMKE-LEKSKPVILTGDLNCAHQEIDIFNPAGNKRSAGFTEEERQSFGSNFLSKGLV 361
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R+ FL+ S + S
Sbjct: 362 DTFRKQHPNVVGYTYWGYRHGGRKTNKGW--RLDYFLVSESIADK--VHDSYIVPDVNGS 417
Query: 110 THCPLTIEY 118
HCP+ +
Sbjct: 418 DHCPIGLVL 426
>gi|49082844|gb|AAT50822.1| PA2545 [synthetic construct]
Length = 271
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 24/137 (17%), Gaps = 27/137 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ + K V+ GD N +
Sbjct: 133 LQSLLENSFKPEQALVVMGDINISPGDCDIGIGEENRKRWLKTGKCSFLPEEREWLATLK 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDL 101
E + R++ D L
Sbjct: 193 NWGLVDSFRALNPEVNDRFSWFDYRSRGFEDNPKRGLRIDVILASRVLQPRFKDAGIDYD 252
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +E
Sbjct: 253 LRGMEKPSDHAPIWLEL 269
>gi|269102062|ref|ZP_06154759.1| exodeoxyribonuclease III [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268161960|gb|EEZ40456.1| exodeoxyribonuclease III [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 268
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/136 (11%), Positives = 31/136 (22%), Gaps = 25/136 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINS---------------------IGDTDDFWQKMD 47
L + + ++ GD N + + +
Sbjct: 133 LMTYLNTYHNNDEELIVMGDINISPIDLDIGIGDNNAKRWLKTGKCSFQPIERQWLKTLL 192
Query: 48 PDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
G + F Q + R+K D + D + +
Sbjct: 193 DWGFIDTFRQLHPTVDDQYSWFDYRSKGFDDNRGLRIDVILATPSLAERCIESGIDYELR 252
Query: 104 RRSKLSTHCPLTIEYD 119
K S H P+ ++
Sbjct: 253 GIEKPSDHAPIWSTFN 268
>gi|116625780|ref|YP_827936.1| exodeoxyribonuclease III [Candidatus Solibacter usitatus Ellin6076]
gi|116228942|gb|ABJ87651.1| Exodeoxyribonuclease III [Candidatus Solibacter usitatus Ellin6076]
Length = 258
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 35/131 (26%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT----------------DDFWQKMDPDG 50
+ L + + +K G+P V+AGD+N + + + +
Sbjct: 126 QRLIEHGQELMKAGVPVVLAGDYNVVPTAQDIYPTRSLDKNALIQPQSRQAYARLLAQGW 185
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKL 108
+ E + +FL+ + +V
Sbjct: 186 TDALRTLQPEGPLWTFWDYERGRWPLGKGMRLDHFLLSPTVSDRLVDGGVDRWVRGEENA 245
Query: 109 STHCPLTIEYD 119
S H P I D
Sbjct: 246 SDHAPAWIVLD 256
>gi|116052214|ref|YP_788942.1| putative exonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
gi|115587435|gb|ABJ13450.1| putative exonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
Length = 266
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGL 51
E L + A + +++G P V+AGDFN + D + ++++ G
Sbjct: 129 EHLIRHAAELMESGHPVVLAGDFNVVPSDFDIYDTRSWKKDALLQPESRECFERLLRQGW 188
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ ++ + + D+ + +
Sbjct: 189 VDALRQRFPDRRIYTFWDYFRQHWQRDAGLRIDHLLLSASLADHLEDAGVDRWVRGEEHA 248
Query: 109 STHCPLTIEYD 119
S H P +
Sbjct: 249 SDHAPAWVSLR 259
>gi|317181208|dbj|BAJ58994.1| exodeoxyribonuclease [Helicobacter pylori F32]
Length = 250
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+K+ ++ P ++ GD N N I + + +
Sbjct: 127 RKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|289665987|ref|ZP_06487568.1| exodeoxyribonuclease III [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289670449|ref|ZP_06491524.1| exodeoxyribonuclease III [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 329
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 28/129 (21%), Gaps = 18/129 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E L + A + P + GDFN D +Q + G
Sbjct: 131 ERLIRHAKTLVDLPHPVALIGDFNVVPTDADIYDPKGWRKDALLQPESRAAYQTLLAQGW 190
Query: 52 LI---RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + D+ + + + K
Sbjct: 191 TDSLLAMHGATPIYTFWDYFRQHFARDRGLRIDHLLLNRKLAPGLQDAGVNKWVRALEKA 250
Query: 109 STHCPLTIE 117
S H P I
Sbjct: 251 SDHAPTWIS 259
>gi|254994979|ref|ZP_05277169.1| exodeoxyribonuclease III (xthA2) [Anaplasma marginale str.
Mississippi]
gi|255003123|ref|ZP_05278087.1| exodeoxyribonuclease III (xthA2) [Anaplasma marginale str. Puerto
Rico]
gi|255004249|ref|ZP_05279050.1| exodeoxyribonuclease III (xthA2) [Anaplasma marginale str.
Virginia]
Length = 284
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 25/115 (21%), Gaps = 18/115 (15%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLIRFPQEKESTCN 64
VI GD+N + I D + + K+
Sbjct: 167 LVIGGDYNVAPDDIDVYDAQALDGKLCFHPKERAGLREILHLGFTDAFRILHEGKQEFSW 226
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R S + D+ + +V S H P+
Sbjct: 227 WNYREGSWQRNRGMRIDHLLLSPNAVDKLVECSILSSVRGLESPSDHAPVMCVLR 281
>gi|253582729|ref|ZP_04859949.1| exodeoxyribonuclease III [Fusobacterium varium ATCC 27725]
gi|251835305|gb|EES63846.1| exodeoxyribonuclease III [Fusobacterium varium ATCC 27725]
Length = 253
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 29/122 (23%), Gaps = 23/122 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ P +I GD N I + + + F
Sbjct: 132 KLDKLKPVIICGDLNVAHKEIDLKNPKSNRKNAGFSDEERAKFTELLENGFIDSFRHFYP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
E + R + + D + + + S HCP+ +
Sbjct: 192 EVTGAYSWWSYRFNARKNNAGWRIDYFVVSERLKDIMEGAEIHNEILG----SDHCPVVL 247
Query: 117 EY 118
+
Sbjct: 248 KL 249
>gi|229124614|ref|ZP_04253799.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus 95/8201]
gi|228658954|gb|EEL14609.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus 95/8201]
Length = 337
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK + ++ + G ++ GD+N+ ++ + +D + K PD L+ +
Sbjct: 211 IRKQQVEYLKAYMNKHYEKGDYVIMGGDWNQLVSDVQLSDPKFVKERPDWLVELPKDFTD 270
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 271 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 327
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 328 NPVSAVFKLK 337
>gi|209695422|ref|YP_002263351.1| exonuclease III [Aliivibrio salmonicida LFI1238]
gi|208009374|emb|CAQ79647.1| exodeoxyribonuclease III [Aliivibrio salmonicida LFI1238]
Length = 268
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/142 (10%), Positives = 28/142 (19%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q + L + +I GD N
Sbjct: 126 KRQFYKDLMIHLNTHHTNDEELIIMGDINISPIDADIGIGEPNAKRWLRTGKCSFQPEER 185
Query: 39 -TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + E + R+K +D + D +
Sbjct: 186 EWLQALKDWGFEDTFRNLHPEVTDQFSWFDYRSKGFVDNRGLRIDVVMATPSLAGKCTEA 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 246 GIDYELRAIEKPSDHAPIWSTF 267
>gi|219683204|ref|YP_002469587.1| exodeoxyribonuclease [Bifidobacterium animalis subsp. lactis AD011]
gi|241191164|ref|YP_002968558.1| exodeoxyribonuclease [Bifidobacterium animalis subsp. lactis Bl-04]
gi|241196570|ref|YP_002970125.1| exodeoxyribonuclease [Bifidobacterium animalis subsp. lactis DSM
10140]
gi|219620854|gb|ACL29011.1| possible exodeoxyribonuclease [Bifidobacterium animalis subsp.
lactis AD011]
gi|240249556|gb|ACS46496.1| exodeoxyribonuclease [Bifidobacterium animalis subsp. lactis Bl-04]
gi|240251124|gb|ACS48063.1| exodeoxyribonuclease [Bifidobacterium animalis subsp. lactis DSM
10140]
gi|289177272|gb|ADC84518.1| Exodeoxyribonuclease III [Bifidobacterium animalis subsp. lactis
BB-12]
gi|295794157|gb|ADG33692.1| exodeoxyribonuclease [Bifidobacterium animalis subsp. lactis V9]
Length = 286
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 20/133 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES----- 61
E +++ D+ G V+ GDFN N I + + + +
Sbjct: 153 ERMQQLQDEAASGGRQAVVCGDFNIAHNPIDLKNPKSNENNNGYFPRERAYMDKWIDQMD 212
Query: 62 ---------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+R ++ + D + + + + + S
Sbjct: 213 YVDVMRDLAGDIQGPYTWWSQRGRAFDNDSGWRLDYQFATPELAQQARGFVVDRASSYDS 272
Query: 107 KLSTHCPLTIEYD 119
+ S H PLTI YD
Sbjct: 273 RWSDHAPLTISYD 285
>gi|218665721|ref|YP_002424683.1| exodeoxyribonuclease III [Acidithiobacillus ferrooxidans ATCC
23270]
gi|218517934|gb|ACK78520.1| exodeoxyribonuclease III [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 253
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 28/130 (21%), Gaps = 22/130 (16%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPD 49
+ + ++ G V GD N +I W
Sbjct: 128 AFLELINARVAAGRAVVFCGDVNTAHQAIDLARPKENARISGFLPEERACLDQWAAAGWV 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ +R + D + + T S
Sbjct: 188 DSFRHLHPDAVEYSWWSQRTDARARNIGWRLDYFWIHESLLPRLRGAGIATDVTG----S 243
Query: 110 THCPLTIEYD 119
HCP+ +E D
Sbjct: 244 DHCPVWLELD 253
>gi|12247526|gb|AAG49922.1|AF311054_1 APEX [Rattus norvegicus]
Length = 289
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 161 EAFRKFLKD-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGEMLQAVP 219
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ +S ++
Sbjct: 220 LADSFRHLYPNT-AYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 276
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 277 GSDHCPITLYLAL 289
>gi|6753086|ref|NP_033817.1| DNA-(apurinic or apyrimidinic site) lyase [Mus musculus]
gi|113985|sp|P28352|APEX1_MOUSE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|220337|dbj|BAA14382.1| APEX nuclease precursor [Mus musculus]
gi|533108|gb|AAC13769.1| apurinic/apyrimidinic endonuclease [Mus musculus]
gi|533329|dbj|BAA07270.1| APEX nuclease [Mus musculus]
gi|12850573|dbj|BAB28774.1| unnamed protein product [Mus musculus]
gi|30851442|gb|AAH52401.1| Apurinic/apyrimidinic endonuclease 1 [Mus musculus]
gi|148688888|gb|EDL20835.1| apurinic/apyrimidinic endonuclease 1 [Mus musculus]
Length = 317
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 189 EAFRKFLKD-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 247
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ +S ++
Sbjct: 248 LADSFRHLYPNT-AYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 304
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 305 GSDHCPITLYLAL 317
>gi|325127357|gb|EGC50292.1| exodeoxyribonuclease III [Neisseria meningitidis N1568]
Length = 259
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHTLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ D + + + +S + K S H P
Sbjct: 194 TLYPDNPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAVKALSAHV----YKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|290559315|gb|EFD92650.1| exodeoxyribonuclease III [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 251
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 33/123 (26%), Gaps = 21/123 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
Q ++ P +I GDFN N I + + F
Sbjct: 132 QALRRKKPVIIGGDFNVAHNEIDIARPKSNQGNAGFTSVERKFIDEMIKKGYIDTFRIFN 191
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+E + KS+ I + N + + S H P+ I
Sbjct: 192 KENGNYTWWTYLYKSARTN-NIGWRIDYLFVSNELKK--RVKDAGIIKNKIGSDHAPVYI 248
Query: 117 EYD 119
E +
Sbjct: 249 ELN 251
>gi|308064283|gb|ADO06170.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
Length = 250
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+K+ ++ P ++ GD N N I + + +
Sbjct: 127 RKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSHPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|300774356|ref|ZP_07084220.1| endonuclease/exonuclease/phosphatase [Chryseobacterium gleum ATCC
35910]
gi|300507000|gb|EFK38134.1| endonuclease/exonuclease/phosphatase [Chryseobacterium gleum ATCC
35910]
Length = 269
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 31/117 (26%), Gaps = 6/117 (5%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ E + K + +P ++GDFN +S + + + + E +
Sbjct: 159 KSSELILKKIKELNPKNLPVTLSGDFNLTDDSEPI-----KILSQNMKDTFYHSETKHYG 213
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V + V +D S H P+ +
Sbjct: 214 PV-GTFTAFDVNTVPKDRIDYIFTQGFTIRSHRHINDRRENLLYPSDHFPVIVHLSL 269
>gi|259417747|ref|ZP_05741666.1| exodeoxyribonuclease III [Silicibacter sp. TrichCH4B]
gi|259346653|gb|EEW58467.1| exodeoxyribonuclease III [Silicibacter sp. TrichCH4B]
Length = 262
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 28/133 (21%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W V+ GD N D +
Sbjct: 133 MRDWF--HADRPEKSVLVGDLNIAPREDDVWDHKKLLKVVSHTPIEVEHLAQVMEAGGWA 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ + E + R K D R + + S K
Sbjct: 191 DVTRKDIPEGQLYSWWSYRAKDW-DAADKGRRLDHVWTTPDITNAAHSSRILRGARGWEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFATFDL 262
>gi|228938309|ref|ZP_04100922.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228971187|ref|ZP_04131818.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228977796|ref|ZP_04138180.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis Bt407]
gi|228781906|gb|EEM30100.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis Bt407]
gi|228788514|gb|EEM36462.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228821346|gb|EEM67358.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326938818|gb|AEA14714.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
thuringiensis serovar chinensis CT-43]
Length = 788
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + Q+ T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNHFVQGIQEKNTNAPVVVLGDMNDFEFSKPLKALEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|229162671|ref|ZP_04290628.1| Exodeoxyribonuclease [Bacillus cereus R309803]
gi|228620553|gb|EEK77422.1| Exodeoxyribonuclease [Bacillus cereus R309803]
Length = 252
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 31/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ P + GD N I + + +P
Sbjct: 128 RAYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCVLEEGFIDT 186
Query: 52 LIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+++ + R + D I + S
Sbjct: 187 YRYLYPDQKGAYSWWSYRMGARAKNIGWRLDYFVVSERMKNQITEAKINSEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHVNF 252
>gi|225077483|ref|ZP_03720682.1| hypothetical protein NEIFLAOT_02546 [Neisseria flavescens
NRL30031/H210]
gi|224951194|gb|EEG32403.1| hypothetical protein NEIFLAOT_02546 [Neisseria flavescens
NRL30031/H210]
Length = 259
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDVPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|468371|gb|AAA21019.1| apurinic/apyrimidinic endonuclease [Rattus norvegicus]
Length = 316
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 188 EAFRKFLKD-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQEAQGFGEMLQAVP 246
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ S ++
Sbjct: 247 LADSFRHLYPNT-AYAYTFWTYMMNARSKNVGWRLDYFLLSQSLLPALC--DSKIRSKAL 303
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 304 GSDHCPITLYLAL 316
>gi|58697046|ref|ZP_00372507.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Drosophila
simulans]
gi|225630665|ref|YP_002727456.1| exodeoxyribonuclease III [Wolbachia sp. wRi]
gi|58536687|gb|EAL59975.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Drosophila
simulans]
gi|225592646|gb|ACN95665.1| exodeoxyribonuclease III [Wolbachia sp. wRi]
Length = 259
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 30/129 (23%), Gaps = 18/129 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
L + +K +IAGD+N + I D +
Sbjct: 131 LYERMSTLLKNEELTIIAGDYNVAPDEIDVFDSNLLNGQVCFHIREREKLRAILNLGFKD 190
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + S + + D + + D + S
Sbjct: 191 AFRISHPNLQQFTWWHYQGNSLRNNQGMRIDYMLLSPQAVDKLETCYIDDRLRKLENPSD 250
Query: 111 HCPLTIEYD 119
H P+ +
Sbjct: 251 HTPVVCAIE 259
>gi|260464219|ref|ZP_05812412.1| exodeoxyribonuclease III Xth [Mesorhizobium opportunistum WSM2075]
gi|259030022|gb|EEW31305.1| exodeoxyribonuclease III Xth [Mesorhizobium opportunistum WSM2075]
Length = 289
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 31/131 (23%), Gaps = 23/131 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQ 57
+ V+ GD N ++ M G I +
Sbjct: 160 IRAEHDEVSASVLVGDLNIAPLEHDVWSHKQLLNVVSHTPVETENFEAMRLAGNWIDLMR 219
Query: 58 -----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLST 110
E++ R + R + + Y+ L + S
Sbjct: 220 LNVPSEQKLYTWWSYRAQDWE-ASNRGRRLDHVWSSPNLVPSFTGYEILRLARGWERPSD 278
Query: 111 HCPLTIEYDFE 121
H P+ +D +
Sbjct: 279 HVPVIARFDLD 289
>gi|217034282|ref|ZP_03439699.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
gi|216943254|gb|EEC22719.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
Length = 250
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+K+ ++ P ++ GD N N I + + +
Sbjct: 127 RKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|242004144|ref|XP_002422991.1| Recombination repair protein, putative [Pediculus humanus corporis]
gi|212505907|gb|EEB10253.1| Recombination repair protein, putative [Pediculus humanus corporis]
Length = 332
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 24/133 (18%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDP--- 48
K + + + + P ++ GD N N I + F + ++
Sbjct: 204 AFKGYLKK-LDSEKPVILCGDLNVAHNEIDLKNPSTNTKTAGFTQEERDGFTKLLNAGFI 262
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
D +P ++ + + F++ + +
Sbjct: 263 DTFRKLYPNKEGAYTYWNYIGNARSRNAGW--RLDYFVVSERIMSTVC--DSVIRKEVYG 318
Query: 109 STHCPLTIEYDFE 121
S HCP+T+ +
Sbjct: 319 SDHCPITLFVALD 331
>gi|218898840|ref|YP_002447251.1| exodeoxyribonuclease III [Bacillus cereus G9842]
gi|218542018|gb|ACK94412.1| exodeoxyribonuclease III [Bacillus cereus G9842]
Length = 252
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 32/130 (24%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DG 50
+ + ++ P + GD N I + + +P D
Sbjct: 128 RSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDT 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ ++ + R + D I + S
Sbjct: 187 YRYLYSDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|332797757|ref|YP_004459257.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
gi|332695492|gb|AEE94959.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
Length = 247
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 28/128 (21%), Gaps = 22/128 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGD------------------TDDFWQKMDPDGL 51
+ + I P +I GDFN I + +
Sbjct: 124 RDFEKFVISLKKPCIICGDFNVAHQEIDIARPKDNVNHAGFTPQEREWFSHFLSLGYVDT 183
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F +E R + ++ S + S H
Sbjct: 184 YRMFVKEGGHYSWWSYRFHAREKNIGW--RIDYCVVSESLKG--RVIKADILEKVMGSDH 239
Query: 112 CPLTIEYD 119
P+ +E
Sbjct: 240 APILLEIQ 247
>gi|317178229|dbj|BAJ56018.1| exodeoxyribonuclease [Helicobacter pylori F16]
Length = 250
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ ++ P ++ GD N N I + + +
Sbjct: 127 KKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|313835987|gb|EFS73701.1| putative exodeoxyribonuclease III [Propionibacterium acnes
HL037PA2]
gi|314929662|gb|EFS93493.1| putative exodeoxyribonuclease III [Propionibacterium acnes
HL044PA1]
gi|314970515|gb|EFT14613.1| putative exodeoxyribonuclease III [Propionibacterium acnes
HL037PA3]
gi|328906267|gb|EGG26042.1| exodeoxyribonuclease III [Propionibacterium sp. P08]
Length = 297
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 36/131 (27%), Gaps = 20/131 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------MDPDGLLIRFPQEK-- 59
L + + G F++ GDFN + + + + +
Sbjct: 166 LTRRCQECAAQGRHFLVIGDFNIAHENADLKNWKANQHNEGFLPEERQWFDTIVSPDTLV 225
Query: 60 -----------ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
R K+ ++ D + + V+ + + +
Sbjct: 226 DVLRAQHPDINGPYSWWSWRGKAFINDAGWRIDYHLASPELAKRAVTTEIDRDSSYAERT 285
Query: 109 STHCPLTIEYD 119
S H + ++YD
Sbjct: 286 SDHAAVVVDYD 296
>gi|321313648|ref|YP_004205935.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|320019922|gb|ADV94908.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
Length = 252
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 33/132 (25%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E L + + + P ++ GD N I + + +
Sbjct: 125 EALLSYILE-LDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAFTRFLEAGF 183
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + R + F++ S + +
Sbjct: 184 VDSFRHVYPDLEGAYSWWSYRAGARDRNIGW--RIDYFVVSESLKEQI--EDASISADVM 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ + +
Sbjct: 240 GSDHCPVELIIN 251
>gi|240127208|ref|ZP_04739869.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae SK-93-1035]
gi|268685568|ref|ZP_06152430.1| exodeoxyribonuclease [Neisseria gonorrhoeae SK-93-1035]
gi|268625852|gb|EEZ58252.1| exodeoxyribonuclease [Neisseria gonorrhoeae SK-93-1035]
Length = 259
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVMHTLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDVPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|167756678|ref|ZP_02428805.1| hypothetical protein CLORAM_02216 [Clostridium ramosum DSM 1402]
gi|167702853|gb|EDS17432.1| hypothetical protein CLORAM_02216 [Clostridium ramosum DSM 1402]
Length = 251
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 29/129 (22%), Gaps = 24/129 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
+ ++ P ++ GD N I + + +
Sbjct: 128 AYLKS-LEKSKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTNLLENGFIDTY 186
Query: 53 IRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++E R + + D I S H
Sbjct: 187 RYLYPDQEGVYSWWSYRFNARKNNAGWRIDYFIVSDCLKEGIKEAFICTDILG----SDH 242
Query: 112 CPLTIEYDF 120
CP+ +E D
Sbjct: 243 CPVGLEIDL 251
>gi|229101774|ref|ZP_04232490.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-28]
gi|228681641|gb|EEL35802.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-28]
Length = 190
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK P V+ GD N S + + ++
Sbjct: 75 QLAQEVNHFVQGIQKKNANAPVVVLGDMNDFEFSKPLKALEGTILKDMLNTV---PKENR 131
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 132 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 187
Query: 122 KGN 124
K +
Sbjct: 188 KAS 190
>gi|183602482|ref|ZP_02963848.1| possible exodeoxyribonuclease [Bifidobacterium animalis subsp.
lactis HN019]
gi|183218401|gb|EDT89046.1| possible exodeoxyribonuclease [Bifidobacterium animalis subsp.
lactis HN019]
Length = 284
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 20/133 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES----- 61
E +++ D+ G V+ GDFN N I + + + +
Sbjct: 151 ERMQQLQDEAASGGRQAVVCGDFNIAHNPIDLKNPKSNENNNGYFPRERAYMDKWIDQMD 210
Query: 62 ---------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+R ++ + D + + + + + S
Sbjct: 211 YVDVMRDLAGDIQGPYTWWSQRGRAFDNDSGWRLDYQFATPELAQQARGFVVDRASSYDS 270
Query: 107 KLSTHCPLTIEYD 119
+ S H PLTI YD
Sbjct: 271 RWSDHAPLTISYD 283
>gi|327481832|gb|AEA85142.1| exodeoxyribonuclease III [Pseudomonas stutzeri DSM 4166]
Length = 263
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E L + A + +G P V+AGD+N + ++++ G
Sbjct: 129 ERLIEHAAGLLASGHPVVLAGDYNVVPTDEDIYNPRSWRKDALLQPESRACYERLLAQGW 188
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + + D+ D + + + +
Sbjct: 189 TDALRAQFPDEPVYTFWDYFRQHWQKNSGLRIDHLLLSPDLAPCLQAAGVDRWVRGQEHA 248
Query: 109 STHCPLTIEY 118
S H P +
Sbjct: 249 SDHAPTWVSL 258
>gi|318062091|ref|ZP_07980812.1| exodeoxyribonuclease III [Streptomyces sp. SA3_actG]
gi|318079946|ref|ZP_07987278.1| exodeoxyribonuclease III [Streptomyces sp. SA3_actF]
Length = 261
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 34/134 (25%), Gaps = 22/134 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------GLLIRFPQEKES 61
LK+ ++ G ++ GD+N + + + L
Sbjct: 128 LKELRERAAAEGREVLVCGDWNIAHTEADLKNWRGNRKNAGFLPEEREWLSRVLDPADGG 187
Query: 62 T---------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
R ++ + D + + + T
Sbjct: 188 YVDVVRAQHAGVEGPYSWWSYRGRAFDNDTGWRIDYHMASAGLAGRALKAEVERAATHEE 247
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+T+ Y+
Sbjct: 248 RWSDHAPVTVTYEM 261
>gi|240081821|ref|ZP_04726364.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae FA19]
gi|240114099|ref|ZP_04728589.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae MS11]
gi|240114662|ref|ZP_04728724.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID18]
gi|240122497|ref|ZP_04735453.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae PID332]
gi|240126654|ref|ZP_04739540.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae SK-92-679]
gi|260441531|ref|ZP_05795347.1| putative exodeoxyribonuclease [Neisseria gonorrhoeae DGI2]
gi|268597918|ref|ZP_06132085.1| exodeoxyribonuclease [Neisseria gonorrhoeae FA19]
gi|268600168|ref|ZP_06134335.1| nuclease [Neisseria gonorrhoeae MS11]
gi|268600307|ref|ZP_06134474.1| nuclease [Neisseria gonorrhoeae PID18]
gi|268681088|ref|ZP_06147950.1| nuclease [Neisseria gonorrhoeae PID332]
gi|268685234|ref|ZP_06152096.1| nuclease [Neisseria gonorrhoeae SK-92-679]
gi|291044894|ref|ZP_06570603.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|268551706|gb|EEZ46725.1| exodeoxyribonuclease [Neisseria gonorrhoeae FA19]
gi|268584299|gb|EEZ48975.1| nuclease [Neisseria gonorrhoeae MS11]
gi|268584438|gb|EEZ49114.1| nuclease [Neisseria gonorrhoeae PID18]
gi|268621372|gb|EEZ53772.1| nuclease [Neisseria gonorrhoeae PID332]
gi|268625518|gb|EEZ57918.1| nuclease [Neisseria gonorrhoeae SK-92-679]
gi|291011788|gb|EFE03784.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 259
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHTLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDVPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|149191818|ref|ZP_01870055.1| exonuclease III [Vibrio shilonii AK1]
gi|148834336|gb|EDL51336.1| exonuclease III [Vibrio shilonii AK1]
Length = 268
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 33/137 (24%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINS---------------------IGDTDDFWQK 45
+ L + ++ ++ GD N ++ Q
Sbjct: 131 KDLMTYLNEHHSNDEKLIVMGDINISPIDLDIGIGEPNRKRWLKTGKCSFQPIEREWLQT 190
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G + F Q + R++ D + D + +
Sbjct: 191 LLDWGFVDTFRQLHPNVDDQFSWFDYRSRGFDDNRGLRIDVVLATKSLAETCSEAGIDYE 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 251 LRGIEKPSDHAPIWSVF 267
>gi|114765837|ref|ZP_01444930.1| exodeoxyribonuclease III, putative [Pelagibaca bermudensis
HTCC2601]
gi|114541836|gb|EAU44873.1| exodeoxyribonuclease III, putative [Roseovarius sp. HTCC2601]
Length = 262
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 28/133 (21%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W + ++ GD N + +
Sbjct: 133 MRDWFRAEAPKKS--ILVGDLNIAPREDDVWSHKQLLKVVSHTPVEVEALAETQEAGGWV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ + E + R D R + + S K
Sbjct: 191 DITRKDIPEGQLYSWWSYR-ARDWDAADKGRRLDHVWATPDIASAGHSSRVLRDARGWEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFATFDL 262
>gi|54309887|ref|YP_130907.1| hypothetical protein PBPRA2733 [Photobacterium profundum SS9]
gi|46914326|emb|CAG21105.1| hypothetical protein PBPRA2733 [Photobacterium profundum SS9]
Length = 319
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 15/132 (11%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNR--KINSIGDTDDFWQKMDPDGLLIRFPQEK 59
L++Q E L++W D++ +PF+I GDFNR +++ L + +
Sbjct: 190 LNRQFEVLEQWVDRRAAEPLPFMILGDFNRRLALHNDKIWQQLDDGRPTGLSLYAATEGQ 249
Query: 60 ESTCNVI-----------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+S C + + + +D+ V+D K +I+NSF + D + L
Sbjct: 250 KSQCRIKIHSKRKKHGQIRHYPNFIDHIVLDGRAKLKMINNSFRETTTDV--EVVKAFNL 307
Query: 109 STHCPLTIEYDF 120
S HCP+ + +
Sbjct: 308 SDHCPIALSLNL 319
>gi|75759849|ref|ZP_00739924.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228902244|ref|ZP_04066404.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|228966664|ref|ZP_04127710.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|74492665|gb|EAO55806.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228793040|gb|EEM40596.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228857359|gb|EEN01859.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
Length = 252
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 32/130 (24%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DG 50
+ + ++ P + GD N I + + +P D
Sbjct: 128 RSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDT 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ ++ + R + D I + S
Sbjct: 187 YRYLYSDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|228922454|ref|ZP_04085756.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|228837168|gb|EEM82507.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
Length = 252
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 31/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ P + GD N I + + +P
Sbjct: 128 RSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFSCILEEGFIDT 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ +++ R + D I + S
Sbjct: 187 YRYLYPDQEDAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINTEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|144897972|emb|CAM74836.1| Endonuclease/exonuclease/phosphatase [Magnetospirillum
gryphiswaldense MSR-1]
Length = 262
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 30/135 (22%), Gaps = 23/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------------------WQKM 46
+ W K G ++ GD N
Sbjct: 128 RQVTDWYAGTYKPGDRVILTGDLNVAPLETDVWSHKQLLKVVSHTPIEVDLLDRMQASLG 187
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTR 104
D + P + R+ R + + + S +
Sbjct: 188 WVDAMRRFIPPSERLYTWWSYRSPDWEKN-DRGRRLDHVWVTPALGDTLRSVEVLRECRS 246
Query: 105 RSKLSTHCPLTIEYD 119
++ S H P+ +E D
Sbjct: 247 WTQPSDHVPVLVELD 261
>gi|47568231|ref|ZP_00238934.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228986876|ref|ZP_04147003.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|47555059|gb|EAL13407.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228772825|gb|EEM21264.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 252
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 32/125 (25%), Gaps = 23/125 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DGLLIRF 55
+++ P + GD N I + + +P D +
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDTYRYLY 191
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
P ++ + R + D I + S HCP+
Sbjct: 192 PNQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMG----SDHCPVE 247
Query: 116 IEYDF 120
+ +F
Sbjct: 248 LHINF 252
>gi|260592674|ref|ZP_05858132.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
gi|260535444|gb|EEX18061.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
Length = 249
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 22/121 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ P ++ GD N I + + +
Sbjct: 132 KLDEIKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEERQKMTQLLSNGFIDTFRTLYP 191
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E+ + R ++ D +V S HCP+ I+
Sbjct: 192 EQVTYSWWSYRFRAREKNTGWRIDYFLISERLRDRLVDAKIHTEIMG----SDHCPIEID 247
Query: 118 Y 118
Sbjct: 248 L 248
>gi|220911407|ref|YP_002486716.1| exodeoxyribonuclease III Xth [Arthrobacter chlorophenolicus A6]
gi|219858285|gb|ACL38627.1| exodeoxyribonuclease III Xth [Arthrobacter chlorophenolicus A6]
Length = 268
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 9/122 (7%), Positives = 23/122 (18%), Gaps = 20/122 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD--------------------FWQKMDPDGLLIRFP 56
+ GD+N D ++ ++ +
Sbjct: 145 ENPEAQVALMGDWNIAPFDDDVWDIDLFVNNGYTHVSPPERAAFHAFETAGFTDVVRPYT 204
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ D + + + + S H P+ +
Sbjct: 205 PGPGVYTYWDYTQLRFPKKEGMRIDFVLASKALASRVTGASIDREERKGKGASDHAPVLV 264
Query: 117 EY 118
E
Sbjct: 265 EL 266
>gi|148977573|ref|ZP_01814152.1| exonuclease III [Vibrionales bacterium SWAT-3]
gi|145963224|gb|EDK28491.1| exonuclease III [Vibrionales bacterium SWAT-3]
Length = 268
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 26/137 (18%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L + + ++ GD N
Sbjct: 131 KDLMTYLNDYHNNDEQIIVMGDINISPIDADIGIGEPNAKRWLKTGKCSFQPEEREWLKA 190
Query: 43 WQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ E + R+K LD + D +
Sbjct: 191 LMDWGFVDTFRQLHPEVTDQYSWFDYRSKGFLDNRGLRIDVVLATQKLADKCTEAGIDYE 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 251 LRGIEKPSDHAPIWSTF 267
>gi|21242774|ref|NP_642356.1| exodeoxyribonuclease III [Xanthomonas axonopodis pv. citri str.
306]
gi|21108255|gb|AAM36892.1| exodeoxyribonuclease III [Xanthomonas axonopodis pv. citri str.
306]
Length = 330
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 28/129 (21%), Gaps = 18/129 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E L + A + P + GDFN D +Q + G
Sbjct: 131 ERLIRHAKTLVDLPHPVALIGDFNVVPTDADIYDPKGWRKDALLQPESRAAYQTLLAQGW 190
Query: 52 LI---RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + D+ + + K
Sbjct: 191 TDSLLAIHGQTPIYTFWDYFRQHFARDRGLRIDHLLLNRTLAPGLQDAGVDKWVRALEKA 250
Query: 109 STHCPLTIE 117
S H P I
Sbjct: 251 SDHAPTWIS 259
>gi|294625005|ref|ZP_06703655.1| exodeoxyribonuclease III [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292600680|gb|EFF44767.1| exodeoxyribonuclease III [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 330
Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 27/129 (20%), Gaps = 18/129 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E L + A + P + GDFN D +Q + G
Sbjct: 131 ERLIRHAKTLVDLPHPVALIGDFNVVPTDADIYDPKGWRKDALLQPESREAYQTLLAQGW 190
Query: 52 LI---RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + D+ + K
Sbjct: 191 TDSLPAIHGQTPIYTFWDYFRQHFARDRGLRIDHLLLNRTLGPGLQDAGVDKWVRALEKA 250
Query: 109 STHCPLTIE 117
S H P I
Sbjct: 251 SDHAPTWIS 259
>gi|269958811|ref|YP_003328599.1| exodeoxyribonuclease 3 [Anaplasma centrale str. Israel]
gi|269848641|gb|ACZ49285.1| exodeoxyribonuclease 3 [Anaplasma centrale str. Israel]
Length = 295
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 32/134 (23%), Gaps = 22/134 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD--G 50
LK + ++ V+ GD+N + D +
Sbjct: 153 LKARMLKLLEGEEWIVVGGDYNVAPECMDVYDAQALDGKLCFHPEERARLRAILYSGFTD 212
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
K+ R S + D+ + +V D S
Sbjct: 213 AFRVLHGGKQEFSWWNYREGSWQRNRGMRIDHILLSPNAVDRLVKCDILSSIRGLESPSD 272
Query: 111 HCPLTI----EYDF 120
H P+ YDF
Sbjct: 273 HAPVVCILHKRYDF 286
>gi|52840885|ref|YP_094684.1| exodeoxyribonuclease III [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|52627996|gb|AAU26737.1| exodeoxyribonuclease III [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
Length = 260
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 33/131 (25%), Gaps = 23/131 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E + G +I GD+N I + + M
Sbjct: 128 EQFARHLMNLKNEGRELIICGDYNIAHKKIDLKNWRGNQKNSGFLPEERAWMDELFGSMG 187
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
QE+E R ++ +I Y R ++
Sbjct: 188 FVDAFRVHNQEEEQYTWWSYRARAWEKNVGW--RIDYQVITPGL--TEYVADSRIFREAR 243
Query: 108 LSTHCPLTIEY 118
S H PL IEY
Sbjct: 244 FSDHAPLMIEY 254
>gi|71279793|ref|YP_269869.1| exonuclease III [Colwellia psychrerythraea 34H]
gi|71145533|gb|AAZ26006.1| exodeoxyribonuclease III [Colwellia psychrerythraea 34H]
Length = 268
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 32/138 (23%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L + + V+ GD N + + +
Sbjct: 131 KDLMTYLNDNHVNDENVVVMGDINISPQDLDIGIGDVNSKRWLKSGKCSFQPEEREWLTR 190
Query: 45 KMDPD--GLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
MD + + R++ D + D + + + D
Sbjct: 191 LMDWGFVDTFRQLHPDTTERYSWFDYRSRGFDDNRGLRIDVVLATKNMAEQCIEADIDYE 250
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 251 LRAIEKPSDHAPIWSTFS 268
>gi|15599367|ref|NP_252861.1| nuclease [Pseudomonas aeruginosa PAO1]
gi|107103689|ref|ZP_01367607.1| hypothetical protein PaerPA_01004760 [Pseudomonas aeruginosa PACS2]
gi|218889499|ref|YP_002438363.1| putative nuclease [Pseudomonas aeruginosa LESB58]
gi|254237052|ref|ZP_04930375.1| hypothetical protein PACG_03084 [Pseudomonas aeruginosa C3719]
gi|254242856|ref|ZP_04936178.1| hypothetical protein PA2G_03623 [Pseudomonas aeruginosa 2192]
gi|9950380|gb|AAG07559.1|AE004833_10 probable nuclease [Pseudomonas aeruginosa PAO1]
gi|126168983|gb|EAZ54494.1| hypothetical protein PACG_03084 [Pseudomonas aeruginosa C3719]
gi|126196234|gb|EAZ60297.1| hypothetical protein PA2G_03623 [Pseudomonas aeruginosa 2192]
gi|218769722|emb|CAW25482.1| probable nuclease [Pseudomonas aeruginosa LESB58]
Length = 266
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGL 51
E L + A + +++G P V+AGDFN + D + ++++ G
Sbjct: 129 EHLIRHAAELMESGHPVVLAGDFNVVPSDFDIYDTRSWKKDALLQPESRECFERLLRQGW 188
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ ++ + + D+ + +
Sbjct: 189 VDALRQRFPDRRLYTFWDYFRQHWQRDAGLRIDHLLLSASLADHLEDAGVDRWVRGEEHA 248
Query: 109 STHCPLTIEYD 119
S H P +
Sbjct: 249 SDHAPAWVSLR 259
>gi|328947089|ref|YP_004364426.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
gi|328447413|gb|AEB13129.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
Length = 251
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 12/130 (9%), Positives = 27/130 (20%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + + ++ GD N I + + +
Sbjct: 127 RAYLKT-LALKKGVIVCGDMNVAHEEIDIKNPKTNRRNAGFTDEERGKMTELLSSGFTDS 185
Query: 52 LIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + R + D + S
Sbjct: 186 FRHFYPDTAGVYSWWSYRFHAREKNTGWRIDYFLVSDSIKDKMTGAKIHTEILG----SD 241
Query: 111 HCPLTIEYDF 120
HCP+ ++ +F
Sbjct: 242 HCPVELDMEF 251
>gi|317182729|dbj|BAJ60513.1| exodeoxyribonuclease [Helicobacter pylori F57]
Length = 250
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+K+ ++ P ++ GD N N I + + +
Sbjct: 127 RKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTHLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|297565545|ref|YP_003684517.1| endonuclease/exonuclease/phosphatase [Meiothermus silvanus DSM
9946]
gi|296849994|gb|ADH63009.1| Endonuclease/exonuclease/phosphatase [Meiothermus silvanus DSM
9946]
Length = 601
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 35/130 (26%), Gaps = 16/130 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + L + + T ++ GD N + LI +
Sbjct: 469 RQAQRLLTFINDLRATDPDVLVVGDLNAYAEEDPLKVLTGAGL---ENLILHISAAKRYS 525
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD-----QSDLDTRRSKLST 110
V +LD+ + + + ++ Y+ + S
Sbjct: 526 YVFNGESGNLDHALATSSLSSQVTGITEWHINADEPRVLDYNTEFKPDDRYAPTPFRSSD 585
Query: 111 HCPLTIEYDF 120
H PL + +
Sbjct: 586 HDPLLVGLNL 595
>gi|228936354|ref|ZP_04099152.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228823186|gb|EEM69020.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 337
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK + ++ + G ++ GD+N+ ++ + +D + K PD L+ +
Sbjct: 211 IRKQQVEYLKAYMNKHYEKGDYVIMGGDWNQLVSDVQLSDPKFVKERPDWLVELPKDFTD 270
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 271 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 327
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 328 NPVSAVFKLK 337
>gi|254168985|ref|ZP_04875824.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197622091|gb|EDY34667.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 23/131 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + ++ ++ P ++ GDFN I + +
Sbjct: 129 KLIHSYLNE-LRKKKPVILCGDFNVAHKEIDLANPKQNVKNAGFTPQERAWMDKFLQDGY 187
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F +E R K+ F++ +S
Sbjct: 188 IDTFRMFTKEGGHYTWWTYRFKARERNIGW--RVDYFVVSEELKDK--VKSSWILSEVYG 243
Query: 109 STHCPLTIEYD 119
S H P+ + D
Sbjct: 244 SDHAPIAMVLD 254
>gi|154507938|ref|ZP_02043580.1| hypothetical protein ACTODO_00424 [Actinomyces odontolyticus ATCC
17982]
gi|153797572|gb|EDN79992.1| hypothetical protein ACTODO_00424 [Actinomyces odontolyticus ATCC
17982]
Length = 271
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 31/132 (23%), Gaps = 19/132 (14%)
Query: 7 EWLKKWADQ----KIKTGIPFVIAGDFNRKINSIGDTDDFW---------------QKMD 47
EWL A+Q + GD+N D
Sbjct: 140 EWLANLAEQGRGWLTDPSALIALVGDWNVAPMDEDVWDMSAFEGATHVSAPEREAFAAFA 199
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
DG + + + + + D + + + +
Sbjct: 200 ADGWVEVTRERVTNYTYWDYQKLRFPKNEGMRIDFAYCSPALAARVSGAQIDRDERKGKG 259
Query: 108 LSTHCPLTIEYD 119
S H P+ ++ D
Sbjct: 260 ASDHVPVIVDVD 271
>gi|146283435|ref|YP_001173588.1| exodeoxyribonuclease III [Pseudomonas stutzeri A1501]
gi|145571640|gb|ABP80746.1| exodeoxyribonuclease III [Pseudomonas stutzeri A1501]
Length = 232
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E L + A + +G P V+AGD+N + ++++ G
Sbjct: 98 ERLIEHAAGLLASGHPVVLAGDYNVVPTDEDIYNPRSWRKDALLQPESRACYERLLAQGW 157
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + + D+ D + + + +
Sbjct: 158 TDALRAQFPDEPVYTFWDYFRQHWQKNSGLRIDHLLLSPDLAPCLQTAGVDRWVRGQEHA 217
Query: 109 STHCPLTIEY 118
S H P +
Sbjct: 218 SDHAPTWVSL 227
>gi|114798068|ref|YP_760636.1| exodeoxyribonuclease III [Hyphomonas neptunium ATCC 15444]
gi|114738242|gb|ABI76367.1| exodeoxyribonuclease III [Hyphomonas neptunium ATCC 15444]
Length = 258
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDG 50
L+ A +K PFV+ GD+N D W+++ G
Sbjct: 126 VAALEDHARSLLKAEEPFVLCGDYNAIPAPEDCWDDTVWNTDALGLPETRAAWRQLKHLG 185
Query: 51 LLIRFP-QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
L F + + + + L + + + K
Sbjct: 186 LTDAFEVCDGRAHQYTFWDYQGGAFQKDHGIRIDHILACPRMTDRLTAIEIYRKARAMDK 245
Query: 108 LSTHCPLTIEYD 119
S H P+ ++
Sbjct: 246 PSDHVPMIAIFE 257
>gi|315641336|ref|ZP_07896412.1| exodeoxyribonuclease III [Enterococcus italicus DSM 15952]
gi|315482909|gb|EFU73429.1| exodeoxyribonuclease III [Enterococcus italicus DSM 15952]
Length = 252
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 33/129 (25%), Gaps = 24/129 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
+ D+ +K P ++ GD N I + + +
Sbjct: 128 AYLDE-LKKDRPVIVCGDLNVAHQEIDLKNWKTNQKNAGFTNEERAKFTALLDHGYTDTF 186
Query: 53 IRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F E + R + + D D + + S S H
Sbjct: 187 RHFYPELTGAYSWWSYRFNARKNNAGWRIDYFIVSNDLTSHLTSASIHADILG----SDH 242
Query: 112 CPLTIEYDF 120
CP+ ++
Sbjct: 243 CPVELQVTL 251
>gi|210135690|ref|YP_002302129.1| exodeoxyribonuclease III [Helicobacter pylori P12]
gi|210133658|gb|ACJ08649.1| exodeoxyribonuclease [Helicobacter pylori P12]
Length = 250
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 36/128 (28%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ ++ P ++ GD N N I + + +
Sbjct: 127 KKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ FL N + + L + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGW--RIDYFLCSNPLK--TCLKDALIYKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|16082631|ref|NP_394956.1| exonuclease III [Thermoplasma acidophilum DSM 1728]
Length = 250
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 34/121 (28%), Gaps = 18/121 (14%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQEK 59
+++ P +I GDFN I D + +D + K
Sbjct: 132 ELRKKKPLIICGDFNVAHEEIDIARPKDNENNAGFTKQERDWMTKFLDSGYVDTYRIFMK 191
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
E + + I F++ + + S H P+T+E D
Sbjct: 192 EGGHYSWWSYRFNARAKNIGWRIDYFVVSDDIR--DRVKKAEILETVTGSDHAPVTLEVD 249
Query: 120 F 120
Sbjct: 250 L 250
>gi|323136205|ref|ZP_08071287.1| exodeoxyribonuclease III Xth [Methylocystis sp. ATCC 49242]
gi|322398279|gb|EFY00799.1| exodeoxyribonuclease III Xth [Methylocystis sp. ATCC 49242]
Length = 266
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 37/135 (27%), Gaps = 23/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKM 46
+ +K W + + T + GD N D F
Sbjct: 132 DEMKSWIETEGVTKGRVALVGDLNIAPLEHDVWSHKALLKVVSHTPVEVEKLTDVFRAGR 191
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTR 104
D + P +++ R + R + L+ + ++ D
Sbjct: 192 WIDAMRHFVPADEKLYTWWSYR-AADWAASNRGRRLDHILVSEALGGALSRLDVLQEARG 250
Query: 105 RSKLSTHCPLTIEYD 119
+ S H P+TIE
Sbjct: 251 WERPSDHVPVTIELS 265
>gi|297824099|ref|XP_002879932.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325771|gb|EFH56191.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
Length = 550
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 34/144 (23%), Gaps = 29/144 (20%)
Query: 2 LSQQGEWLKKWAD------QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + +++W ++++ P V+ GD N I + K +
Sbjct: 411 LKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRNAGFTIEER 470
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ R+ FL+ S +
Sbjct: 471 QSFGANFLDKGFVDTFRKQHPGVVGYTYWGYRHGGRKTNRGW--RLDYFLVSESIAAN-- 526
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ +
Sbjct: 527 VHDSYILPDINGSDHCPIGLILKL 550
>gi|153815015|ref|ZP_01967683.1| hypothetical protein RUMTOR_01232 [Ruminococcus torques ATCC 27756]
gi|145847583|gb|EDK24501.1| hypothetical protein RUMTOR_01232 [Ruminococcus torques ATCC 27756]
Length = 252
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 30/124 (24%), Gaps = 23/124 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+K++ P ++ GD N I + + + F
Sbjct: 133 KKLEEKKPVIVTGDMNVAHKEIDLKNPKTNRKNAGFTDEERGKFTELLDAGFIDTFRYFY 192
Query: 57 QEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
++E R + D + S HCP+
Sbjct: 193 PDREGIYSWWSYRFSARAKNAGWRIDYFCVSESLKERLKDAKILT----DVMGSDHCPIE 248
Query: 116 IEYD 119
++ D
Sbjct: 249 LDMD 252
>gi|254498808|ref|ZP_05111519.1| exodeoxyribonuclease III [Legionella drancourtii LLAP12]
gi|254351972|gb|EET10796.1| exodeoxyribonuclease III [Legionella drancourtii LLAP12]
Length = 260
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 35/131 (26%), Gaps = 23/131 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E K Q G +I GD+N I + + M
Sbjct: 128 EQFAKHLIQLKNEGRELIICGDYNIAHKQIDLKNWRSNQKNSGFLPDERAWMDKLFGSMG 187
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
QE+E R+++ +I S R ++
Sbjct: 188 FVDAFRVHNQEEEQYTWWSYRSRAWEKNVGW--RIDYQVITPGLSEH--VIDSRIFREAR 243
Query: 108 LSTHCPLTIEY 118
LS H P IEY
Sbjct: 244 LSDHAPFMIEY 254
>gi|255034710|ref|YP_003085331.1| exodeoxyribonuclease III Xth [Dyadobacter fermentans DSM 18053]
gi|254947466|gb|ACT92166.1| exodeoxyribonuclease III Xth [Dyadobacter fermentans DSM 18053]
Length = 261
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 36/128 (28%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ LKK A + +P V+AGD+N ++++ G
Sbjct: 126 KRLKKHAKYLLSEEVPVVLAGDYNVIPKEKDVYKPERWVDNALFFPEPRKAYKELVGQGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ ++ + + D+ + +V+ K
Sbjct: 186 IDSIRHLHPDETIYTFWDYLRNAYGRNAGLRLDHLLLSPQIAPRLVAAGVDKHVRGWEKS 245
Query: 109 STHCPLTI 116
S H P I
Sbjct: 246 SDHAPTWI 253
>gi|84498021|ref|ZP_00996818.1| exodeoxyribonuclease III [Janibacter sp. HTCC2649]
gi|84381521|gb|EAP97404.1| exodeoxyribonuclease III [Janibacter sp. HTCC2649]
Length = 269
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 30/137 (21%), Gaps = 20/137 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-------------------- 43
+ + + V+ GD N ++ +
Sbjct: 130 RFLDAVGSRLADLAVNDGYAVLTGDLNICHSADDLKNWKGNVGKAGFLPEEQAHLDRWVG 189
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
D R K+ + D + D T
Sbjct: 190 ALAYADVHRALHGPGPGPYTWWSWRGKAFDNDAGWRIDYHFASAPLAKLATRADVGRAST 249
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H PLT++YD
Sbjct: 250 YAERWSDHAPLTVDYDL 266
>gi|261380655|ref|ZP_05985228.1| exodeoxyribonuclease III [Neisseria subflava NJ9703]
gi|284796637|gb|EFC51984.1| exodeoxyribonuclease III [Neisseria subflava NJ9703]
Length = 259
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDVPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|225022084|ref|ZP_03711276.1| hypothetical protein CORMATOL_02117 [Corynebacterium matruchotii
ATCC 33806]
gi|224945017|gb|EEG26226.1| hypothetical protein CORMATOL_02117 [Corynebacterium matruchotii
ATCC 33806]
Length = 298
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 21/133 (15%)
Query: 7 EWLKKWA-----DQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------WQKMDP 48
+ L + D + + P V+ GDFN D
Sbjct: 132 DALARHVEDQAGDPEQPSSQPLVLGGDFNIAPTDANVWDITEFIDHTHVTEAERQAFAGL 191
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + +F + + +
Sbjct: 192 IEAGLTVTSPTSGYSYWDYKAGRFPKNEGM---LIDFQLARGLHATGSFIDVAERSGTGA 248
Query: 109 STHCPLTIEYDFE 121
S H P+ ++YD++
Sbjct: 249 SDHAPVVVDYDYD 261
>gi|241759074|ref|ZP_04757185.1| exodeoxyribonuclease III [Neisseria flavescens SK114]
gi|319639647|ref|ZP_07994394.1| exodeoxyribonuclease [Neisseria mucosa C102]
gi|241320676|gb|EER56929.1| exodeoxyribonuclease III [Neisseria flavescens SK114]
gi|317399218|gb|EFV79892.1| exodeoxyribonuclease [Neisseria mucosa C102]
Length = 259
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDVPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|229822126|ref|YP_002883652.1| exodeoxyribonuclease III Xth [Beutenbergia cavernae DSM 12333]
gi|229568039|gb|ACQ81890.1| exodeoxyribonuclease III Xth [Beutenbergia cavernae DSM 12333]
Length = 263
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 33/132 (25%), Gaps = 20/132 (15%)
Query: 7 EWLKKWADQKI----KTGIPFVIAGDFNRKINSIGDTD----------------DFWQKM 46
+WL+ D + G +AGD+N D F
Sbjct: 127 DWLRALRDAAATWAAEPGAQVALAGDWNIAPLDEDVWDMSLFDGATHVSPAERAAFAALD 186
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
D + ++ + + D + + + + +
Sbjct: 187 DAGFAEVTRLHVPQAYTYWDYQRLRFPRNEGMRIDFVLATRALAERVAAVGIDREERKGK 246
Query: 107 KLSTHCPLTIEY 118
S H P+ +E
Sbjct: 247 GASDHVPVVVEI 258
>gi|226322793|ref|ZP_03798311.1| hypothetical protein COPCOM_00565 [Coprococcus comes ATCC 27758]
gi|225208774|gb|EEG91128.1| hypothetical protein COPCOM_00565 [Coprococcus comes ATCC 27758]
Length = 231
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 30/131 (22%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + ++ P + GD N I + + +
Sbjct: 105 DAFLAYLKK-LEETKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKFSALLDAGF 163
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + R K+ D +
Sbjct: 164 IDTYRYFYPDKEGIYSWWSYRFKAREKNAGWRIDYFCTSKALESRLEDAKILT----NVF 219
Query: 108 LSTHCPLTIEY 118
S HCP+ +++
Sbjct: 220 GSDHCPVELDF 230
>gi|332674310|gb|AEE71127.1| exodeoxyribonuclease III [Helicobacter pylori 83]
Length = 250
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+K+ ++ P ++ GD N N I + + +
Sbjct: 127 RKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|315585908|gb|ADU40289.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
Length = 250
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+K+ ++ P ++ GD N N I + + +
Sbjct: 127 RKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|257870107|ref|ZP_05649760.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
gi|257804271|gb|EEV33093.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
Length = 261
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 35/132 (26%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + +K P ++ GD N +I + + +
Sbjct: 135 DAFRAYLTD-LKQQKPVILCGDLNVAHQNIDLKNWKTNQKNAGFTPEEREKFSTLLSAGF 193
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + R + + D D + +V
Sbjct: 194 TDTFRYFYPDAEGIYSWWSYRFNARKNNAGWRIDYFVVSDDLNDRLVDAKIHTEILG--- 250
Query: 108 LSTHCPLTIEYD 119
S HCP+ ++ +
Sbjct: 251 -SDHCPVELQLN 261
>gi|160915303|ref|ZP_02077516.1| hypothetical protein EUBDOL_01312 [Eubacterium dolichum DSM 3991]
gi|158433102|gb|EDP11391.1| hypothetical protein EUBDOL_01312 [Eubacterium dolichum DSM 3991]
Length = 252
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 33/131 (25%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + Q++K V+ GD N I + + +
Sbjct: 124 DAFRAYL-QRLKESKSVVVCGDLNVAHQEIDLKNPKTNRRNAGFTDEEREKMTTLLSSGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+KE+ R + D D I
Sbjct: 183 VDSYRYLYPDKENVYSWWSYRFSAREKNAGWRIDYFLVSEDAKERIEEAQIHT----DIY 238
Query: 108 LSTHCPLTIEY 118
S HCP+++ +
Sbjct: 239 GSDHCPVSLSF 249
>gi|329120764|ref|ZP_08249426.1| exodeoxyribonuclease III [Neisseria bacilliformis ATCC BAA-1200]
gi|327460561|gb|EGF06897.1| exodeoxyribonuclease III [Neisseria bacilliformis ATCC BAA-1200]
Length = 258
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
G V+ GD+N +I + + + +
Sbjct: 134 LADLKAEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVINDLGWTDIWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + + + + K S H P
Sbjct: 194 TLYPDHPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAKALNAHVY--KDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|317010103|gb|ADU80683.1| exodeoxyribonuclease III [Helicobacter pylori India7]
Length = 250
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ ++ P ++ GD N N I + + +
Sbjct: 127 KKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|297561147|ref|YP_003680121.1| exodeoxyribonuclease III Xth [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296845595|gb|ADH67615.1| exodeoxyribonuclease III Xth [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 267
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 37/131 (28%), Gaps = 20/131 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLL 52
L K + + G V+ GD+N + + + +D G +
Sbjct: 135 LVKRRAEVEERGRELVVCGDWNIAHAEVDLKNWRANRKNAGFLPEEREWLSRVLDEAGFV 194
Query: 53 I----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
P ++ R ++ + D + + V +
Sbjct: 195 DVVRSLHPDQEGPYTWWSYRGRAFDNDAGWRIDLQVATPGLAGCAVDARVERASEHAGRW 254
Query: 109 STHCPLTIEYD 119
S H P+T+ Y
Sbjct: 255 SDHAPVTVRYR 265
>gi|257877428|ref|ZP_05657081.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325568814|ref|ZP_08145107.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
gi|257811594|gb|EEV40414.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325157852|gb|EGC70008.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
Length = 250
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 34/132 (25%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + +K P ++ GD N +I + +
Sbjct: 124 DAFLAYLTE-LKQQKPVILCGDLNVAHKNIDIKNWKTNQKSAGFTPEEREKFSTLLAAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + R + + D D + ++
Sbjct: 183 TDTFRYFYPDAEGIYSWWSYRFNARKNNAGWRIDYFVVSDDLNERLLDAKIHTDIIG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ ++ +
Sbjct: 240 -SDHCPVELDLN 250
>gi|257867352|ref|ZP_05647005.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257873685|ref|ZP_05653338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
gi|257801408|gb|EEV30338.1| exodeoxyribonuclease [Enterococcus casseliflavus EC30]
gi|257807849|gb|EEV36671.1| exodeoxyribonuclease [Enterococcus casseliflavus EC10]
Length = 252
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 36/134 (26%), Gaps = 24/134 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + +K P ++ GD N +I + +
Sbjct: 124 DAFLAYLTE-LKQQKPVILCGDLNVAHKNIDIKNWKTNQKSAGFTPEEREKFSTLLAAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + R + + D D + S++
Sbjct: 183 TDTFRYFYPDAEGIYSWWSYRFNARKNNAGWRIDYFVVSDDLNESLLDAKIHTDIIG--- 239
Query: 108 LSTHCPLTIEYDFE 121
S HCP+ ++ ++
Sbjct: 240 -SDHCPVELDLNYP 252
>gi|154688190|ref|YP_001423351.1| ExoA [Bacillus amyloliquefaciens FZB42]
gi|154354041|gb|ABS76120.1| ExoA [Bacillus amyloliquefaciens FZB42]
Length = 252
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 31/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
K + QK+ P ++ GD N I + + +
Sbjct: 128 KDYL-QKLDRKKPVILCGDLNVAHREIDLKNPKANRKNAGFSEQEREAFSALLNAGFTDS 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + R + ++ + + S
Sbjct: 187 FRYLYPDQEGAYSWWSYRTNAREKNIGW--RLDYVIVSDRLKQRISQAAICA--DIMGSD 242
Query: 111 HCPLTIEYDF 120
HCP+ + D
Sbjct: 243 HCPVEMTVDL 252
>gi|325205029|gb|ADZ00483.1| exodeoxyribonuclease III [Neisseria meningitidis M01-240355]
Length = 259
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNVAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDVPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|255325807|ref|ZP_05366899.1| exodeoxyribonuclease III [Corynebacterium tuberculostearicum SK141]
gi|311740107|ref|ZP_07713940.1| exodeoxyribonuclease III [Corynebacterium pseudogenitalium ATCC
33035]
gi|255297019|gb|EET76344.1| exodeoxyribonuclease III [Corynebacterium tuberculostearicum SK141]
gi|311304803|gb|EFQ80873.1| exodeoxyribonuclease III [Corynebacterium pseudogenitalium ATCC
33035]
Length = 269
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 19/133 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL-- 51
L ++A+ +++GDFN D +Q ++ GL
Sbjct: 136 LARYAENH--AQSKLLMSGDFNIAPRDEDVWDIEAFRGKTHVTEPERAAFQMLEEAGLEE 193
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ R E + + + D + + + ++ K S H
Sbjct: 194 VTRRFTEDQRYTYFDYKGMRFQKNEGMRIDFQLASAPLAQHVTGAQVDMVERAGDKTSDH 253
Query: 112 CPLTIEYDFEKGN 124
CPL +Y+ N
Sbjct: 254 CPLLADYNLPDFN 266
>gi|282163799|ref|YP_003356184.1| exodeoxyribonuclease [Methanocella paludicola SANAE]
gi|282156113|dbj|BAI61201.1| exodeoxyribonuclease [Methanocella paludicola SANAE]
Length = 255
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 26/130 (20%), Gaps = 22/130 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + D+ G V+ GD N +
Sbjct: 128 DAFLDYVDKLKAEGRKVVVCGDVNTAHTELDIARPKENSKKSGFLPMEREWMDKFEAHGF 187
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F + K+ F + ++
Sbjct: 188 IDTFRVFEKAGGHYTYWDTFTKARERNVGW--RIDYFYVSDNLKKNLKGA--FIEPDVMG 243
Query: 109 STHCPLTIEY 118
S HCP+ I+
Sbjct: 244 SDHCPVGIDL 253
>gi|296138677|ref|YP_003645920.1| exodeoxyribonuclease III Xth [Tsukamurella paurometabola DSM 20162]
gi|296026811|gb|ADG77581.1| exodeoxyribonuclease III Xth [Tsukamurella paurometabola DSM 20162]
Length = 272
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 33/132 (25%), Gaps = 21/132 (15%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------------------G 50
++ + V+ GD+N + + +
Sbjct: 139 EYLGTLGRRRRKAVVCGDWNIGHTELDIKNWKGNVKNSGFLPEERAWMSTYIGAGRPFTD 198
Query: 51 LLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ R K+ + D + + + + + S
Sbjct: 199 VVRELHPGTPGPYAWWSWRGKAFDNDSGWRIDLQIANNALAQHATAARVERAEAYSLRWS 258
Query: 110 THCPLTIEYDFE 121
H P+T+EY +
Sbjct: 259 DHAPVTVEYSCD 270
>gi|223985143|ref|ZP_03635238.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
gi|223962889|gb|EEF67306.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
Length = 252
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 33/132 (25%), Gaps = 23/132 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + K+ P V GD N + I + +P
Sbjct: 126 DAMARHL-AKLNETKPVVYTGDLNVAVEEIDLKNPKTNHFNPGFSDQERQKMRDLLSLGF 184
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
EK R S F++ + +
Sbjct: 185 ADTFRTLYPEKVEYSWWSYRFNSRAKNVGW--RIDYFIVSQRLMNQ--VKDSVIYGDILG 240
Query: 109 STHCPLTIEYDF 120
S HCP+ +E +F
Sbjct: 241 SDHCPVGVEIEF 252
>gi|225552135|ref|ZP_03773075.1| exodeoxyribonuclease III [Borrelia sp. SV1]
gi|225371133|gb|EEH00563.1| exodeoxyribonuclease III [Borrelia sp. SV1]
Length = 255
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 22/128 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIG------------DTDDFWQKMDP------DG 50
++ AD + G VI GDFN I + +D
Sbjct: 127 VENLADSLVCDGKNVVICGDFNIAHTEIDLISPDSNRESPGYYIEETTWLDDFLNKGYVD 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F ++ R ++ F+++ F + L + S
Sbjct: 187 TFRIFNKDPGYYTWWSYRTRARERNMGW--RIDYFIVNEFFKRN--VEKSLILDKVMGSD 242
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 243 HCPVFLEL 250
>gi|158321340|ref|YP_001513847.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
gi|158141539|gb|ABW19851.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
Length = 252
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 24/129 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + + + P ++ GD N N I + + +
Sbjct: 128 RSYLN-NLDKQKPIIVCGDLNVAHNEIDLKNPKSNRKNAGFSDEERAKFTEFLGNGYIDT 186
Query: 52 LIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F ++ + + + D +VS D D S
Sbjct: 187 YRYFYPDREGAYTWWSYMFNARANNAGWRIDYFCVSERLQDKLVSADIHDHILG----SD 242
Query: 111 HCPLTIEYD 119
HCP+ + +
Sbjct: 243 HCPVELVIN 251
>gi|15646134|ref|NP_208316.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|2314703|gb|AAD08563.1| exodeoxyribonuclease (lexA) [Helicobacter pylori 26695]
Length = 250
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ ++ P ++ GD N N I + + +
Sbjct: 127 KKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|309811929|ref|ZP_07705701.1| putative exodeoxyribonuclease III [Dermacoccus sp. Ellin185]
gi|308434141|gb|EFP58001.1| putative exodeoxyribonuclease III [Dermacoccus sp. Ellin185]
Length = 269
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 34/133 (25%), Gaps = 21/133 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
+ L+ Q + P ++ GDFN + + ++ +G
Sbjct: 131 DALEARMAQLV--DRPALVMGDFNVAHTANDLKNWKGNRGKAGFLEDEQAYLTRLTQNGW 188
Query: 52 LIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ R K+ + D + + +
Sbjct: 189 VDVVRANHGDVPGPYSWWSWRGKAFDNDSGWRIDYQFASPALAAVAREPWIGRAAAYDQR 248
Query: 108 LSTHCPLTIEYDF 120
S H + ++YD
Sbjct: 249 WSDHAAVVVDYDL 261
>gi|291457988|ref|ZP_06597378.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291419320|gb|EFE93039.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 272
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
+ +++ ++ P + GD N I + + ++ G
Sbjct: 126 DAFREYILS-LEEKKPVIYCGDLNVAHQEIDLKNPASNHHNAGFTDDERAKFSRLLDCGY 184
Query: 52 LI----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
L P+E+++ R K+ F++ S
Sbjct: 185 LDSFRFLHPEERDAYSWWSYRTKARERNVGW--RIDYFVVSEKLRERIRGASIHP--EIM 240
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 241 GSDHCPVELDL 251
>gi|213021237|ref|NP_001132943.1| DNA-(apurinic or apyrimidinic site) lyase [Sus scrofa]
gi|210062866|gb|ACJ06403.1| APEX nuclease 1 [Sus scrofa]
Length = 318
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASHKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ +S ++
Sbjct: 249 LADSFRHLYPNT-AYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|308183626|ref|YP_003927753.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
gi|308062786|gb|ADO04674.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308065811|gb|ADO07703.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
Length = 250
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+K+ ++ P ++ GD N N I + + +
Sbjct: 127 RKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|296387271|ref|ZP_06876770.1| putative exonuclease III [Pseudomonas aeruginosa PAb1]
Length = 266
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 38/131 (29%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGL 51
E L + A + +++G P V+AGDFN + D + ++++ G
Sbjct: 129 EHLIRHAAELMESGHPVVLAGDFNVVPSDFDIYDTRSWKKDALLQPESRECFERLLRQGW 188
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ ++ + + D+ + +
Sbjct: 189 VDALRQRFPDRRLYTFWDYFRQHWQRDAGLRIDHLLLSASLADHLEDAGVDRWVRGEEHA 248
Query: 109 STHCPLTIEYD 119
S H P +
Sbjct: 249 SDHAPAWVSLR 259
>gi|126433169|ref|YP_001068860.1| exodeoxyribonuclease III [Mycobacterium sp. JLS]
gi|126232969|gb|ABN96369.1| Exodeoxyribonuclease III [Mycobacterium sp. JLS]
Length = 267
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 11/128 (8%), Positives = 28/128 (21%), Gaps = 20/128 (15%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIR 54
W + +P + GD+N + ++ G
Sbjct: 141 HGWLTEN--PALPIAMVGDWNIAPTDDDVWSVEAYQDSTHVTPPERQAFTEIVDAGYADV 198
Query: 55 ---FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F + + D + + + + + S H
Sbjct: 199 VRPFTPGPGVYTYWDYTRLAFQKRRGMRIDFILGSPAFADRVTHAEIVREERKGKGASDH 258
Query: 112 CPLTIEYD 119
P+ ++
Sbjct: 259 APVLVDLR 266
>gi|317013296|gb|ADU83904.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
Length = 250
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ ++ P ++ GD N N I + + +
Sbjct: 127 KKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|254166764|ref|ZP_04873618.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289596498|ref|YP_003483194.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197624374|gb|EDY36935.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289534285|gb|ADD08632.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 23/131 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + ++ ++ P ++ GDFN I + +
Sbjct: 129 KLIHSYLNE-LRKKKPVILCGDFNVAHKEIDLANPKQNVKNAGFTPQERAWMDEFLQDGY 187
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F +E R K+ F++ +S
Sbjct: 188 IDTFRMFTKEGGHYTWWTYRFKARERNIGW--RVDYFVVSEELKDK--VKSSWILSEVYG 243
Query: 109 STHCPLTIEYD 119
S H P+ + D
Sbjct: 244 SDHAPIAMVLD 254
>gi|108563814|ref|YP_628130.1| exodeoxyribonuclease III [Helicobacter pylori HPAG1]
gi|107837587|gb|ABF85456.1| exodeoxyribonuclease [Helicobacter pylori HPAG1]
Length = 250
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ ++ P ++ GD N N I + + +
Sbjct: 127 KKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|15677903|ref|NP_275071.1| exodeoxyribonuclease [Neisseria meningitidis MC58]
gi|218767349|ref|YP_002341861.1| putative nuclease [Neisseria meningitidis Z2491]
gi|157883966|pdb|2JC5|A Chain A, Apurinic Apyrimidinic (Ap) Endonuclease (Nape) From
Neisseria Meningitidis
gi|7227344|gb|AAF42400.1| exodeoxyribonuclease [Neisseria meningitidis MC58]
gi|121051357|emb|CAM07648.1| putative nuclease [Neisseria meningitidis Z2491]
gi|316983973|gb|EFV62952.1| exodeoxyribonuclease III [Neisseria meningitidis H44/76]
gi|319409609|emb|CBY89908.1| putative exodeoxyribonuclease [Neisseria meningitidis WUE 2594]
gi|325139403|gb|EGC61943.1| exodeoxyribonuclease III [Neisseria meningitidis CU385]
gi|325201128|gb|ADY96583.1| exodeoxyribonuclease III [Neisseria meningitidis H44/76]
gi|325208932|gb|ADZ04384.1| exodeoxyribonuclease III [Neisseria meningitidis NZ-05/33]
Length = 259
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDVPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|269218059|ref|ZP_06161913.1| exodeoxyribonuclease III [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269212994|gb|EEZ79334.1| exodeoxyribonuclease III [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 263
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 11/118 (9%), Positives = 28/118 (23%), Gaps = 16/118 (13%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD--FWQKMDPDGLLIRFPQE--------------KE 60
+ ++AGD+N + D F ++ +
Sbjct: 145 EDSSAQLLLAGDWNVVPSDADVWDPELFRGELYASDPEREAFHAFADAGFAEVTRGATEA 204
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + D + + + + + S H P+ +E
Sbjct: 205 PYTFWDYQRLRFPKNEGMRIDFAWASPALAGRVAAAHIDRNERKGKGASDHVPVVVEL 262
>gi|108797547|ref|YP_637744.1| exodeoxyribonuclease III [Mycobacterium sp. MCS]
gi|119866633|ref|YP_936585.1| exodeoxyribonuclease III [Mycobacterium sp. KMS]
gi|108767966|gb|ABG06688.1| Exodeoxyribonuclease III [Mycobacterium sp. MCS]
gi|119692722|gb|ABL89795.1| Exodeoxyribonuclease III [Mycobacterium sp. KMS]
Length = 267
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 11/128 (8%), Positives = 28/128 (21%), Gaps = 20/128 (15%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIR 54
W + +P + GD+N + ++ G
Sbjct: 141 HGWLTEN--PALPIAMVGDWNIAPTDDDVWSVEAYQDSTHVTPPERQAFTEIVDAGYADV 198
Query: 55 ---FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F + + D + + + + + S H
Sbjct: 199 VRPFTPGPGVYTYWDYTRLAFQKRRGMRIDFILGSPAFADRVTHAEIVREERKGKGASDH 258
Query: 112 CPLTIEYD 119
P+ ++
Sbjct: 259 APVLVDLR 266
>gi|260808574|ref|XP_002599082.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
gi|229284358|gb|EEN55094.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
Length = 272
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 37/134 (27%), Gaps = 21/134 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF----------------WQKMDPDG 50
E + + + P V+ GD N N I + + + +G
Sbjct: 142 EAFTAYLKK-LDKKKPVVLCGDLNVAHNEIDLKNPKGNKNKTPGFTDKEREGFTTLLDEG 200
Query: 51 LLIRFPQ--EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + +E+ C + F++ + ++
Sbjct: 201 FKDSYRELYPEETDCYTFWSYMGGARAKNVGWRLDYFVLSDRLMPQLC--DNVIRSEVMG 258
Query: 109 STHCPLTIEYDFEK 122
S HCP+ + K
Sbjct: 259 SDHCPIVLLLAMGK 272
>gi|301057309|ref|ZP_07198427.1| endonuclease/exonuclease/phosphatase family protein [delta
proteobacterium NaphS2]
gi|300448539|gb|EFK12186.1| endonuclease/exonuclease/phosphatase family protein [delta
proteobacterium NaphS2]
Length = 258
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 31/118 (26%), Gaps = 7/118 (5%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E + +W +K +P ++ GDFN +S + + +
Sbjct: 145 KQAEIISRWVREKT---VPVILMGDFNDGPHSDAHAVLASSQTGLSDVWQVLGHAEGKES 201
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
L V S H P +++ ++
Sbjct: 202 FTHHGFTG----VPKKSRIDWILSSKPPYAVDARLLHDQFDGRYPSDHFPYYVDFTWK 255
>gi|170727269|ref|YP_001761295.1| exonuclease III [Shewanella woodyi ATCC 51908]
gi|169812616|gb|ACA87200.1| exodeoxyribonuclease III [Shewanella woodyi ATCC 51908]
Length = 268
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/142 (11%), Positives = 31/142 (21%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q + L + ++ + GD N +
Sbjct: 126 KRQFYKDLMIYLNEHHSADEDIAVIGDINISPIDLDIGIGEPNAKRWLKTGKCSFQPEER 185
Query: 39 -TDDFWQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
E+ + R+K D + D + +V
Sbjct: 186 EWLKTLMDWGLLDTFRELHPERVDRYSWFDYRSKGFDDNRGLRIDVVLATKSLADRLVES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
D K S H P+ +
Sbjct: 246 DVDYDLRGIEKPSDHAPIWSSF 267
>gi|300742521|ref|ZP_07072542.1| exodeoxyribonuclease III [Rothia dentocariosa M567]
gi|300381706|gb|EFJ78268.1| exodeoxyribonuclease III [Rothia dentocariosa M567]
Length = 278
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 32/129 (24%), Gaps = 21/129 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
+ W F + GD+N D F+ ++ +G
Sbjct: 150 VNGWL--HADPAAQFALVGDWNVAPEDTDVWDIDFFRENDLTHVSAPEREAFYALLNDEG 207
Query: 51 LLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
L+ + + + D + + + + + S
Sbjct: 208 LIDPVRPYTQGEYTYWDYQAGRFSKNEGMRIDFQLCSPALAARVENAWIDREEREGDGAS 267
Query: 110 THCPLTIEY 118
H P+ IE
Sbjct: 268 DHTPVVIEL 276
>gi|269791683|ref|YP_003316587.1| exodeoxyribonuclease III Xth [Thermanaerovibrio acidaminovorans DSM
6589]
gi|269099318|gb|ACZ18305.1| exodeoxyribonuclease III Xth [Thermanaerovibrio acidaminovorans DSM
6589]
Length = 259
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/138 (10%), Positives = 33/138 (23%), Gaps = 24/138 (17%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ----------------- 44
LS+ E +++ ++ ++ GD N T+ +
Sbjct: 127 LSRLAELVRE-----LEGDGEVLLVGDLNVAPTEADVTNPKNKADHVCFHRDVREAFEGL 181
Query: 45 -KMDPDGLLIRFPQEKESTCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ R + R + D+ + V
Sbjct: 182 LGAGLVDVFRRHRPGEGEFSFWDYRVKGALERNIGWRIDHILATRGLADRSVDSAVLRDY 241
Query: 103 TRRSKLSTHCPLTIEYDF 120
+ S H P+ ++
Sbjct: 242 RAMERPSDHGPVMGVFEL 259
>gi|188528295|ref|YP_001910982.1| exodeoxyribonuclease III [Helicobacter pylori Shi470]
gi|188144535|gb|ACD48952.1| exodeoxyribonuclease [Helicobacter pylori Shi470]
Length = 250
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+K+ ++ P ++ GD N N I + + +
Sbjct: 127 RKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSHPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|188997510|ref|YP_001931761.1| exodeoxyribonuclease III Xth [Sulfurihydrogenibium sp. YO3AOP1]
gi|188932577|gb|ACD67207.1| exodeoxyribonuclease III Xth [Sulfurihydrogenibium sp. YO3AOP1]
Length = 264
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 29/130 (22%), Gaps = 21/130 (16%)
Query: 11 KWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPDGL 51
+ + ++ GD N + I D +
Sbjct: 134 NFLKENFDFENQKIMLLGDLNIALEDIDVYDPVLLTDSIGTMPEERELLRQLLNLGLIDT 193
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLS 109
K+ + + D + + + RR K S
Sbjct: 194 FRYLYPNKQQFTWWDYIGGAIWRNEGMRIDYILVSKPFLQYVKNVEVDLWPRRRRSPKPS 253
Query: 110 THCPLTIEYD 119
H P+ ++ +
Sbjct: 254 DHAPVILDLE 263
>gi|323358249|ref|YP_004224645.1| exonuclease III [Microbacterium testaceum StLB037]
gi|323274620|dbj|BAJ74765.1| exonuclease III [Microbacterium testaceum StLB037]
Length = 281
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 30/131 (22%), Gaps = 19/131 (14%)
Query: 7 EWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDF-----------------WQKMD 47
E L+++ + P + GDFN + D
Sbjct: 135 EKLRQYTADTLAKDPDLPLALTGDFNIAPTDADNGDPTVVEGATTHVSPAERAAFAAFET 194
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ P + + D + ++ + + +
Sbjct: 195 AGLTDVVRPLIPTGYTYWDYKQLRFPRNEGLRIDFILGSRAFADAVQGAEIHRDERKGEV 254
Query: 108 LSTHCPLTIEY 118
S H P+ +
Sbjct: 255 PSDHVPVVADL 265
>gi|297563086|ref|YP_003682060.1| exodeoxyribonuclease III Xth [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296847534|gb|ADH69554.1| exodeoxyribonuclease III Xth [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 275
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 12/121 (9%), Positives = 23/121 (19%), Gaps = 18/121 (14%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPDGLLIRFPQE 58
G GDFN D D ++ +
Sbjct: 142 ADPGAQIAYVGDFNIAPRDEDVWDMAAFEGSTHVTEPERVAFDKLVGAGFDEVVRAYTPG 201
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + D + + + S H P+ +
Sbjct: 202 PGVYTYWDYKGLAFPKRRGMRIDFVLASPALRDRVSGASIDREERKGKGASDHAPVIVGL 261
Query: 119 D 119
D
Sbjct: 262 D 262
>gi|295691547|ref|YP_003595240.1| exodeoxyribonuclease III Xth [Caulobacter segnis ATCC 21756]
gi|295433450|gb|ADG12622.1| exodeoxyribonuclease III Xth [Caulobacter segnis ATCC 21756]
Length = 268
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 29/130 (22%), Gaps = 26/130 (20%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDT-------------------DDFWQKMDPDGLLIRF 55
+K P ++ GD N D + MD L
Sbjct: 137 KKRDPKDPLIVTGDLNIAPGENDVWSHRQMLKVVSHTPPELEAFDALIKSMDLLDLPRLA 196
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS-------IVSYDQSDLDTRRSKL 108
E + + + + L V+ D +
Sbjct: 197 TPEPDKLFSWWSYRAADFRKSNRGLRLDHILASPGLRDAAIVDGQVASRVHDDVREWERP 256
Query: 109 STHCPLTIEY 118
S H P+T +
Sbjct: 257 SDHAPVTADL 266
>gi|283796572|ref|ZP_06345725.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|291075985|gb|EFE13349.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|295092540|emb|CBK78647.1| exodeoxyribonuclease III [Clostridium cf. saccharolyticum K10]
gi|295115277|emb|CBL36124.1| exodeoxyribonuclease III [butyrate-producing bacterium SM4/1]
Length = 251
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 30/129 (23%), Gaps = 24/129 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPD-- 49
+ + + ++ P + GD N I + + +
Sbjct: 125 DAFLAYLKK-LEEKKPVIFCGDLNVAHREIDLKNPRTNRKNAGFTDEERGKFSALLDAGF 183
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + E R K+ D +VS
Sbjct: 184 IDTYRHFYPDTEGVYSWWSYRFKAREKNAGWRIDYFCVSESLEDRLVSASIHTEIMG--- 240
Query: 108 LSTHCPLTI 116
S HCP+ +
Sbjct: 241 -SDHCPVEL 248
>gi|184201443|ref|YP_001855650.1| putative exodeoxyribonuclease III [Kocuria rhizophila DC2201]
gi|183581673|dbj|BAG30144.1| putative exodeoxyribonuclease [Kocuria rhizophila DC2201]
Length = 279
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 31/138 (22%), Gaps = 20/138 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMD 47
+ + + Q + ++ GD N + F +
Sbjct: 142 RFMDAMLTRLPQLAQGSDHALVVGDLNVGHTERDIKNWKGNVKNAGFLPEERAYFDRFFG 201
Query: 48 PDGLLI----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
G + R K+ D + S +
Sbjct: 202 DVGYVDVARSLAGDVPGPYTWWSYRGKAFDTDAGWRIDYHMATPGLAARARSATVDRAAS 261
Query: 104 RRSKLSTHCPLTIEYDFE 121
+ S H PL ++Y +
Sbjct: 262 YHVRFSDHAPLVVDYALD 279
>gi|49475800|ref|YP_033841.1| exodeoxyribonuclease III [Bartonella henselae str. Houston-1]
gi|49238607|emb|CAF27848.1| Exodeoxyribonuclease III [Bartonella henselae str. Houston-1]
Length = 260
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 17/133 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
E L A +K P V+AGD+N + +Q++ G
Sbjct: 128 MERLYTHAKSLLKYEEPLVLAGDYNVIPTPLDAKTPKEWSDDALFLPQTRQAFQRIIHLG 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS-FSIVSYDQSDLDTRRS-KL 108
++ +++ + L+ + S + R K
Sbjct: 188 FYDAIRNVTDTPSFSFWDFQAAAWRKNNGIRIDHLLLSPEAVDQLICAYSQKEVRGYQKP 247
Query: 109 STHCPLTIEYDFE 121
S H P+ I+ +F
Sbjct: 248 SDHTPVWIDLNFN 260
>gi|255018766|ref|ZP_05290892.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL F2-515]
Length = 136
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + ++ + P V+ GD N I + + +
Sbjct: 9 DAILEYVK-NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGF 67
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + ++ R + D +V
Sbjct: 68 IDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIH----ADVL 123
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E +
Sbjct: 124 GSDHCPVELELNL 136
>gi|146307459|ref|YP_001187924.1| exonuclease III [Pseudomonas mendocina ymp]
gi|145575660|gb|ABP85192.1| Exodeoxyribonuclease III [Pseudomonas mendocina ymp]
Length = 270
Score = 62.2 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 13/137 (9%), Positives = 26/137 (18%), Gaps = 27/137 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L++ ++ V+ GD N +
Sbjct: 133 LQQLLVERFDPQQALVVMGDINISPEDCDIGIGEANRLRWLKTGKCSFLPEEREWLATLK 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
+ R++ D L + +
Sbjct: 193 NWGLVDSFRHLNPTVNDRFSWFDYRSRGFEDEPKRGLRIDVILASQALQGRLKDAGIDYD 252
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +E
Sbjct: 253 LRGMDKPSDHAPIWLEL 269
>gi|317501545|ref|ZP_07959741.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088593|ref|ZP_08337504.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|316897056|gb|EFV19131.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407550|gb|EGG87050.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
Length = 250
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 30/124 (24%), Gaps = 23/124 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+K++ P ++ GD N I + + + F
Sbjct: 131 KKLEEKKPVIVTGDMNVAHKEIDLKNPKTNRKNAGFTDEERGKFTELLDAGFIDTFRYFY 190
Query: 57 QEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
++E R + D + S HCP+
Sbjct: 191 PDREGIYSWWSYRFSARAKNAGWRIDYFCVSESLKERLKDAKILT----DVMGSDHCPIE 246
Query: 116 IEYD 119
++ D
Sbjct: 247 LDMD 250
>gi|291612503|ref|YP_003522660.1| exodeoxyribonuclease III Xth [Sideroxydans lithotrophicus ES-1]
gi|291582615|gb|ADE10273.1| exodeoxyribonuclease III Xth [Sideroxydans lithotrophicus ES-1]
Length = 288
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 33/126 (26%), Gaps = 23/126 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLL 52
Q ++G ++ GD+N + ++ +
Sbjct: 165 HMVQLQRSGRDVIVCGDWNIAHTEKDLRNWRGNKKNSGFLPEERAWLTELLGEVGFVDVF 224
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ E E+ R ++ + + S + + S H
Sbjct: 225 RKLHPELEAYTWWSNRGQAWAKDVGW--RIDYQIATPGMAAK--AVSTGIYKEQRFSDHA 280
Query: 113 PLTIEY 118
PL ++Y
Sbjct: 281 PLMVDY 286
>gi|117919951|ref|YP_869143.1| exonuclease III [Shewanella sp. ANA-3]
gi|117612283|gb|ABK47737.1| Exodeoxyribonuclease III [Shewanella sp. ANA-3]
Length = 270
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 27/137 (19%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L I GD N +
Sbjct: 131 QDLMAHLHANHSNDEDIAIIGDINISPIDLDIGIGEVNRKRWLKTGKCSFQPEEREWLKT 190
Query: 43 WQKMDPDGLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q + ++ R+K D + D + +V D
Sbjct: 191 LQGWGLVDTFRQLHPDRCERYSWFDYRSKGFDDNRGLRIDVILATPSLAARLVESDVDYE 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 251 LRGIDKPSDHAPIWSTF 267
>gi|229157316|ref|ZP_04285394.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
gi|228626043|gb|EEK82792.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
Length = 252
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 23/125 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DGLLIRF 55
+++ P V GD N I + + +P D +
Sbjct: 132 KRLDEKKPVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDTYRYLY 191
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
P ++ + R + + D I + S HCP+
Sbjct: 192 PNQEGAYSWWSYRMGARVKNIGWRLDYFVVSERMKDQITEAKINSEVMG----SDHCPVE 247
Query: 116 IEYDF 120
+ +F
Sbjct: 248 LHINF 252
>gi|77919973|ref|YP_357788.1| exonuclease III [Pelobacter carbinolicus DSM 2380]
gi|77546056|gb|ABA89618.1| Exodeoxyribonuclease III [Pelobacter carbinolicus DSM 2380]
Length = 276
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 34/146 (23%), Gaps = 27/146 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TDDFWQK 45
L + + + ++ GD N D+ ++
Sbjct: 131 RELGDFLESRFSPEADLIVMGDANVAFRDEDIGIGQDNAKRWLRTGKCSFLPEERDWLRR 190
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQS 99
+ GL+ F Q + R++ L S
Sbjct: 191 LFDWGLVDTFRQSRSDAAELFSWFDYRSRGFEKDPRRGLRIDLILATQVLSRRCSGSGID 250
Query: 100 DLDTRRSKLSTHCPLTIEYDFEKGNV 125
K S HCP+ E D +
Sbjct: 251 YGIRGMEKPSDHCPIWAEVDLSLAGI 276
>gi|300782769|ref|YP_003763060.1| exodeoxyribonuclease III [Amycolatopsis mediterranei U32]
gi|299792283|gb|ADJ42658.1| exodeoxyribonuclease III [Amycolatopsis mediterranei U32]
Length = 278
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 37/133 (27%), Gaps = 20/133 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------- 48
L + + G V+ GD+N +++ + + +
Sbjct: 137 LAELRAKAAAAGREAVVVGDWNIAYDTVDLKNWRGNRKNSGFLPEERAWLGRVYTEAGYT 196
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
D P+ R ++ + D + + +V +
Sbjct: 197 DVQRRLDPEGPGPYTWWSYRGQAFDNDSGWRIDCQLATPGLAEKVVDVVVERAAAYDQRW 256
Query: 109 STHCPLTIEYDFE 121
S H P+T YD +
Sbjct: 257 SDHAPVTATYDID 269
>gi|293188973|ref|ZP_06607706.1| exodeoxyribonuclease III [Actinomyces odontolyticus F0309]
gi|292822075|gb|EFF81001.1| exodeoxyribonuclease III [Actinomyces odontolyticus F0309]
Length = 271
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 31/132 (23%), Gaps = 19/132 (14%)
Query: 7 EWLKKWADQ----KIKTGIPFVIAGDFNRKINSIGDTDDFW---------------QKMD 47
EWL A+Q + GD+N D
Sbjct: 140 EWLANLAEQGRGWLTDPSALIALVGDWNVAPLDEDVWDMSAFEGATHVSAPEREAFAAFA 199
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
DG + + + + + D + + + +
Sbjct: 200 ADGWVEVTRERVTNYTYWDYQKLRFPKNEGMRIDFAYCSPALAARVSGAQIDRDERKGKG 259
Query: 108 LSTHCPLTIEYD 119
S H P+ ++ D
Sbjct: 260 ASDHVPVIVDVD 271
>gi|294664292|ref|ZP_06729661.1| exodeoxyribonuclease III [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292605941|gb|EFF49223.1| exodeoxyribonuclease III [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 330
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 27/129 (20%), Gaps = 18/129 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E L + A + P + GDFN D +Q + G
Sbjct: 131 ERLIRHAKTLVDLPHPVALIGDFNVVPTDADIYDPKGWRKDALLQPESREAYQTLLAQGW 190
Query: 52 LI---RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + D+ + K
Sbjct: 191 TDSLPAIHGQTPIYTFWDYFRQHFARDRGLRIDHLLLNRTLGPGLQDAGVDKWVRALEKA 250
Query: 109 STHCPLTIE 117
S H P I
Sbjct: 251 SDHAPTWIS 259
>gi|212634722|ref|YP_002311247.1| exonuclease III [Shewanella piezotolerans WP3]
gi|212556206|gb|ACJ28660.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Shewanella
piezotolerans WP3]
Length = 268
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 37/138 (26%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TDDFWQK 45
+ L + ++ I GD N + ++ +
Sbjct: 131 KDLMVYLNEHHSADEDIAIIGDINISPVDLDIGIGEPNAKRWLKTGKCSFQPEEREWLKT 190
Query: 46 MDPDGLLIRFPQ----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ GL+ F Q E R+K +D + D + +V D
Sbjct: 191 LMDWGLVDTFRQLHPTRTERYSWFDYRSKGFVDNRGLRIDVVLATKSLAARLVESDVDYD 250
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 251 LRGIEKPSDHAPIWSSFS 268
>gi|228988325|ref|ZP_04148418.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228771390|gb|EEM19863.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 352
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 226 IRKQQVEFLKEYMNKHYKNGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|229016371|ref|ZP_04173315.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1273]
gi|229022601|ref|ZP_04179127.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1272]
gi|228738692|gb|EEL89162.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1272]
gi|228744927|gb|EEL94985.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1273]
Length = 788
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + ++ QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNQFVQGIQKKNTNAPVVVLGDMNDFEFSKPLEALQGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|317011660|gb|ADU85407.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 250
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ ++ P ++ GD N N I + + +
Sbjct: 127 KKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|297539760|ref|YP_003675529.1| exodeoxyribonuclease III Xth [Methylotenera sp. 301]
gi|297259107|gb|ADI30952.1| exodeoxyribonuclease III Xth [Methylotenera sp. 301]
Length = 262
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 32/126 (25%), Gaps = 21/126 (16%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPDGLL 52
IK+G +I GD+N + + ++ +
Sbjct: 137 HMQALIKSGREIIICGDWNIAHKEADLKNYKGNKKNSGFLPEERAWLTTLFDEVGWVDVY 196
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
C N+ + + + + S + + S H
Sbjct: 197 RTLHPNTTDECYTWWSNRGQAYAKNVGWRIDYQIATPAIAAK--AVSTSVYKAERFSDHA 254
Query: 113 PLTIEY 118
PL +EY
Sbjct: 255 PLIVEY 260
>gi|295135375|ref|YP_003586051.1| endonuclease/exonuclease/phosphatase family protein [Zunongwangia
profunda SM-A87]
gi|294983390|gb|ADF53855.1| endonuclease/exonuclease/phosphatase family protein [Zunongwangia
profunda SM-A87]
Length = 258
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 8/118 (6%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + + + P V++GDFN ++ Q +D G + +
Sbjct: 148 QESAKLIFEKITELNTQDYPVVLSGDFNLMPDTKSIQYLSEQMIDAKGAADLVFGPEGT- 206
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNS-FSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ R + N+ F + Y S H P+ +E +
Sbjct: 207 ------YNGFNFSEPVTRRIDYVFLSNNGFQVKKYAVLSDSKDLKYPSDHLPVMVELE 258
>gi|257069277|ref|YP_003155532.1| exodeoxyribonuclease III Xth [Brachybacterium faecium DSM 4810]
gi|256560095|gb|ACU85942.1| exodeoxyribonuclease III Xth [Brachybacterium faecium DSM 4810]
Length = 273
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 30/133 (22%), Gaps = 20/133 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------ 48
+ + +Q G + GD N +
Sbjct: 141 DAMMLRLEQLRAAGGHVALTGDINIAHTEWDIKNWKGNLKSAGFLPEERAYLDRLTTDAG 200
Query: 49 --DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
D +R K+ + D + D + S + +
Sbjct: 201 FVDVHRALHGDGPGPYTWWSQRGKAFDNDAGWRIDYQLATEDLAARATSAQVDRAPSYDT 260
Query: 107 KLSTHCPLTIEYD 119
+ S H PL I Y
Sbjct: 261 RWSDHAPLVISYS 273
>gi|89897437|ref|YP_520924.1| hypothetical protein DSY4691 [Desulfitobacterium hafniense Y51]
gi|219670588|ref|YP_002461023.1| exodeoxyribonuclease III Xth [Desulfitobacterium hafniense DCB-2]
gi|89336885|dbj|BAE86480.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540848|gb|ACL22587.1| exodeoxyribonuclease III Xth [Desulfitobacterium hafniense DCB-2]
Length = 250
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 30/123 (24%), Gaps = 23/123 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+ ++ P ++ GD N I + + + F
Sbjct: 131 KNLEKSKPVILCGDLNVAHTEIDLKNPKTNRKNAGFTDEERAKFSELLKNGFIDTFRHFN 190
Query: 57 QEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+K+ + + + D + D S HCP+
Sbjct: 191 PDKKEAYTWWSYMFNARANNAGWRIDYFCVSESLKNELKDAMIYDQIMG----SDHCPVG 246
Query: 116 IEY 118
+E
Sbjct: 247 LEI 249
>gi|317126375|ref|YP_004100487.1| exodeoxyribonuclease III [Intrasporangium calvum DSM 43043]
gi|315590463|gb|ADU49760.1| Exodeoxyribonuclease III [Intrasporangium calvum DSM 43043]
Length = 263
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 11/136 (8%), Positives = 26/136 (19%), Gaps = 20/136 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK---------------- 45
L+ + + W P + GD+N + +
Sbjct: 129 LAALADAGRSWLAD--DPSAPIALLGDWNIAPFDEDVWSVPFYEGRTHTSPRERAAFQAV 186
Query: 46 --MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
++ + D + +
Sbjct: 187 VDAGFADVVRPHCPGPGVYTYWDYVQLRFQKGRGMRIDFALCSPALARRVTGAAIDREAR 246
Query: 104 RRSKLSTHCPLTIEYD 119
+ S H P+ E +
Sbjct: 247 KGKGASDHAPVVFEIE 262
>gi|229591315|ref|YP_002873434.1| exonuclease III [Pseudomonas fluorescens SBW25]
gi|229363181|emb|CAY50233.1| exodeoxyribonuclease III [Pseudomonas fluorescens SBW25]
Length = 270
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/144 (9%), Positives = 29/144 (20%), Gaps = 27/144 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------ 38
+ E L++ + + V+ GD N
Sbjct: 127 QRFYEDLQQLLESQFSNDQALVVMGDVNISPEDCDIGIGADNAKRWLKTGKCSFLPEERE 186
Query: 39 TDDFWQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVS 95
+ + + R++ D + N +
Sbjct: 187 WMARLKNWGLVDSFRHLNPDVVDRFSWFDYRSRGFEDEPKRGLRIDVIMASNGLLPRVKD 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +E
Sbjct: 247 AGVDYDLRGLEKPSDHAPIWLELS 270
>gi|118470089|ref|YP_886033.1| exodeoxyribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|118171376|gb|ABK72272.1| exodeoxyribonuclease III [Mycobacterium smegmatis str. MC2 155]
Length = 273
Score = 62.2 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 19/130 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ---------------KMDPDGLLI 53
+ K Q ++ GD+N + + G +
Sbjct: 143 VSKRMAQLQAGDREALVCGDWNIGHTENDIKNWKGNVKKSGFLPEERAWVSGLLASGWVD 202
Query: 54 RFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
Q R K+ + D + +V+ + + S
Sbjct: 203 AVRQLHGDVPGPYSWWSWRGKAFDNDAGWRIDYHLVTPGLAGRLVAGGTERPEAYALRWS 262
Query: 110 THCPLTIEYD 119
H P+T+E+
Sbjct: 263 DHAPVTVEFS 272
>gi|330818664|ref|YP_004362369.1| Endonuclease/exonuclease/phosphatase family protein [Burkholderia
gladioli BSR3]
gi|327371057|gb|AEA62413.1| Endonuclease/exonuclease/phosphatase family protein [Burkholderia
gladioli BSR3]
Length = 257
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/143 (11%), Positives = 36/143 (25%), Gaps = 28/143 (19%)
Query: 3 SQQGE-----WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------- 41
QQ + + ++ GD N I +
Sbjct: 119 RQQAKFRFMAEFMPHLAELKAKKREVILCGDVNIVHKEIDIRNWKSNQKNSGCLPEERAW 178
Query: 42 ---FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ ++ + + R ++ + + +
Sbjct: 179 LTQLFDEVGYVDVFRTLDPRPDQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAGTAKQT 236
Query: 99 SDLDTRRSKLSTHCPLTIEYDFE 121
S R K S H PLT++YD++
Sbjct: 237 SIF--RDIKFSDHAPLTVDYDYK 257
>gi|298206939|ref|YP_003715118.1| exodeoxyribonuclease [Croceibacter atlanticus HTCC2559]
gi|83849573|gb|EAP87441.1| exodeoxyribonuclease [Croceibacter atlanticus HTCC2559]
Length = 254
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 29/128 (22%), Gaps = 22/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGLL 52
+++ + V+ GD+N D +
Sbjct: 131 EYSKNLRHSIPNLVVCGDYNICHKPEDIHDPVRLKNVSGFLPVERDWLTKFIDSGFIDSF 190
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
F + E+ R + + D + S HC
Sbjct: 191 RVFNDQPENYTWWSYRANARANNKGWRLDYLMVTPPLQEKLKRSVILKDAV----HSDHC 246
Query: 113 PLTIEYDF 120
P+ +E D
Sbjct: 247 PVLLELDL 254
>gi|118475279|ref|YP_892840.1| exodeoxyribonuclease III [Campylobacter fetus subsp. fetus 82-40]
gi|118414505|gb|ABK82925.1| exodeoxyribonuclease III [Campylobacter fetus subsp. fetus 82-40]
Length = 252
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 27/128 (21%), Gaps = 23/128 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLI 53
+ + + G + GD N I +
Sbjct: 129 YINALVSEGKGVIFCGDVNTAHREIDLKNPKANSKTSGFLPIERAWIDKVIDSGFIDTFR 188
Query: 54 RFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + + R + D + + D S HC
Sbjct: 189 FINGDKENAYSWWSYRFNARAKNVGWRIDYFFISSNLKDKLKDAFILDSIEG----SDHC 244
Query: 113 PLTIEYDF 120
P+ IE D
Sbjct: 245 PVGIEIDL 252
>gi|78047637|ref|YP_363812.1| exodeoxyribonuclease III [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325927635|ref|ZP_08188864.1| Exodeoxyribonuclease III [Xanthomonas perforans 91-118]
gi|78036067|emb|CAJ23758.1| exodeoxyribonuclease III [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|325542002|gb|EGD13515.1| Exodeoxyribonuclease III [Xanthomonas perforans 91-118]
Length = 331
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 27/129 (20%), Gaps = 18/129 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E L + A + P + GDFN D +Q + G
Sbjct: 131 ERLIRHAKTLVDLPHPVALIGDFNVVPTDADIYDPKGWRKDALLQPESREAYQTLLAQGW 190
Query: 52 LI---RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + D+ + + K
Sbjct: 191 TDSLLAIHGHTPIYTFWDYFRQHFARDRGLRIDHLLLNRTLAPDLQDAGVDKWVRALEKA 250
Query: 109 STHCPLTIE 117
S H P I
Sbjct: 251 SDHAPTWIS 259
>gi|313109336|ref|ZP_07795300.1| putative extracellular nuclease [Pseudomonas aeruginosa 39016]
gi|310881802|gb|EFQ40396.1| putative extracellular nuclease [Pseudomonas aeruginosa 39016]
Length = 780
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 21/139 (15%)
Query: 3 SQQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ + L W D +I GD N + L+ R +
Sbjct: 636 ARAAQALVDWLAGDPTGAKEPDRLIIGDLNSYAKEDPVN--VIRGAGYTDLVARQAGAGK 693
Query: 61 STCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDT 103
V LD+ + + + + ++ Y+ S +
Sbjct: 694 GYSYVFSGQSGYLDHALANASLARQVRGAVEWHINADEPRVLDYNVEFKTPRQQDSLYNA 753
Query: 104 RRSKLSTHCPLTIEYDFEK 122
+ S H P+ I D +
Sbjct: 754 EPYRASDHDPVVIGIDLRR 772
>gi|296387571|ref|ZP_06877046.1| predicted extracellular nuclease [Pseudomonas aeruginosa PAb1]
Length = 780
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 21/139 (15%)
Query: 3 SQQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ + L W D +I GD N + L+ R +
Sbjct: 636 ARAAQALVDWLAGDPTGAKEPDRLIIGDLNSYAKEDPVN--VIRGAGYTDLVARQAGAGK 693
Query: 61 STCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDT 103
V LD+ + + + + ++ Y+ S +
Sbjct: 694 GYSYVFSGQSGYLDHALANASLARQVRGAVEWHINADEPRVLDYNVEFKTPRQQDSLYNA 753
Query: 104 RRSKLSTHCPLTIEYDFEK 122
+ S H P+ I D +
Sbjct: 754 EPYRASDHDPVVIGIDLRR 772
>gi|296330017|ref|ZP_06872501.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676741|ref|YP_003868413.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153056|gb|EFG93921.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414985|gb|ADM40104.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 252
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 29/129 (22%), Gaps = 24/129 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E L + + + P ++ GD N I + + +
Sbjct: 125 EALLSYILE-LDKKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQERGAFTRLLEAGF 183
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + R + D I S
Sbjct: 184 VDSFRHVYPDLEGAYSWWSYRAGARDRNIGWRLDYFVVSERLEEQIEDASIS----ADVM 239
Query: 108 LSTHCPLTI 116
S HCP+ +
Sbjct: 240 GSDHCPVEL 248
>gi|291403439|ref|XP_002718079.1| PREDICTED: APEX nuclease 1 [Oryctolagus cuniculus]
Length = 318
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 34/133 (25%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + + FL+ +S ++
Sbjct: 249 LTDSFRHLYPDT-AYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|113983|sp|P23196|APEX1_BOVIN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|118|emb|CAA40014.1| BAP 1 [Bos taurus]
Length = 318
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ S ++
Sbjct: 249 LTDSFRHLYPNT-AYAYTFWTYMMNARSKNVGWRLDYFLLSQSVLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|86141021|ref|ZP_01059580.1| exodeoxyribonuclease [Leeuwenhoekiella blandensis MED217]
gi|85832963|gb|EAQ51412.1| exodeoxyribonuclease [Leeuwenhoekiella blandensis MED217]
Length = 255
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 31/130 (23%), Gaps = 22/130 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGL 51
+ ++++ KT +++GD+N I D +
Sbjct: 129 QAYSEELRKTRPNLIVSGDYNICHEPIDIHDPVRLKNVSGFLPVEREWLSGFINSGFTDS 188
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E R + + D I K S H
Sbjct: 189 FRHLNPNVEQYSWWSYRADARANNKGWRLDYNMVSEPLKDKIKRAVILPEA----KHSDH 244
Query: 112 CPLTIEYDFE 121
CP +E D
Sbjct: 245 CPALVELDLN 254
>gi|125972979|ref|YP_001036889.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|256004776|ref|ZP_05429751.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|125713204|gb|ABN51696.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|255991226|gb|EEU01333.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|316940785|gb|ADU74819.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
Length = 251
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 23/121 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
+K P ++ GD N I + + F +
Sbjct: 134 LKAKKPVIVCGDMNVAHKEIDLKNPESNRRSAGFTDEERAKFTELLNAGFIDTFRFFYPD 193
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + D + +VS D S HCP+ ++
Sbjct: 194 KTGAYTWWSYMFNARARNAGWRIDYFCVSEELKDRLVSASIHD----DVMGSDHCPVELQ 249
Query: 118 Y 118
Sbjct: 250 I 250
>gi|116051946|ref|YP_789211.1| extracellular nuclease [Pseudomonas aeruginosa UCBPP-PA14]
gi|115587167|gb|ABJ13182.1| predicted extracellular nuclease [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 780
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 21/139 (15%)
Query: 3 SQQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ + L W D +I GD N + L+ R +
Sbjct: 636 ARAAQALVDWLAGDPTGAKEPDRLIIGDLNSYAKEDPVN--VIRGAGYTDLVARQAGAGK 693
Query: 61 STCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDT 103
V LD+ + + + + ++ Y+ S +
Sbjct: 694 GYSYVFSGQSGYLDHALANASLARQVRGAVEWHINADEPRVLDYNVEFKTPRQQDSLYNA 753
Query: 104 RRSKLSTHCPLTIEYDFEK 122
+ S H P+ I D +
Sbjct: 754 EPYRASDHDPVVIGIDLRR 772
>gi|229158676|ref|ZP_04286734.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus ATCC 4342]
gi|228624660|gb|EEK81429.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus ATCC 4342]
Length = 352
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 226 IRKQQVEFLKEYMNKHYKNGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|229197850|ref|ZP_04324566.1| Exodeoxyribonuclease [Bacillus cereus m1293]
gi|228585568|gb|EEK43670.1| Exodeoxyribonuclease [Bacillus cereus m1293]
Length = 252
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 30/125 (24%), Gaps = 23/125 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+++ P + GD N I + + +P
Sbjct: 132 KRLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDTYRYLY 191
Query: 57 QE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + + R + D I + + S HCP+
Sbjct: 192 PDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITAAKINSEVMG----SDHCPVE 247
Query: 116 IEYDF 120
+ +F
Sbjct: 248 LHINF 252
>gi|229199222|ref|ZP_04325900.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus m1293]
gi|228584239|gb|EEK42379.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus m1293]
Length = 352
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ + G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKEYMNKHYEKGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|134297280|ref|YP_001121015.1| exodeoxyribonuclease III Xth [Burkholderia vietnamiensis G4]
gi|134140437|gb|ABO56180.1| exodeoxyribonuclease III Xth [Burkholderia vietnamiensis G4]
Length = 257
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 44/145 (30%), Gaps = 31/145 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++K ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELKQQREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + E R ++ + + +
Sbjct: 177 WLTQLFDEVGYVDVFRTLDPRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAGTAKS 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFEK 122
S + K S H PLT++YD++K
Sbjct: 235 TSIF--KDIKFSDHAPLTVDYDYKK 257
>gi|187736008|ref|YP_001878120.1| Endonuclease/exonuclease/phosphatase [Akkermansia muciniphila ATCC
BAA-835]
gi|187426060|gb|ACD05339.1| Endonuclease/exonuclease/phosphatase [Akkermansia muciniphila ATCC
BAA-835]
Length = 336
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 3/119 (2%)
Query: 3 SQQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ L+ + ++ + G+P ++ GDFN + L P++
Sbjct: 219 RREAYALRDYLNEALASQDGMPLLLYGDFNDGPSDSAVQVIQGPAKTEYRLNRLKPRDSR 278
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + N L D + S H + +E
Sbjct: 279 GETWTIYYEDGDTYHSFDHLFLNNTLKKRLGRKPPMGILDSPP-SLQASDHRGVWVELR 336
>gi|324329013|gb|ADY24273.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 352
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 226 IRKQQVEFLKEYMNKHYKNGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|146286032|sp|A1YES6|APEX1_GORGO RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|120974134|gb|ABM46644.1| APEX1 [Gorilla gorilla]
Length = 318
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +++ + + P V+ GD N I + Q +
Sbjct: 190 EAFRRFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 249 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|56416778|ref|YP_153852.1| exodeoxyribonuclease III [Anaplasma marginale str. St. Maries]
gi|56388010|gb|AAV86597.1| exodeoxyribonuclease III [Anaplasma marginale str. St. Maries]
Length = 276
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 25/115 (21%), Gaps = 18/115 (15%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLIRFPQEKESTCN 64
VI GD+N + I D + + K+
Sbjct: 159 LVIGGDYNVAPDDIDVYDAQALDGKLCFHPKERAGLREILHLGFTDAFRILHEGKQEFSW 218
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R S + D+ + +V S H P+
Sbjct: 219 WNYREGSWQRNRGMRIDHLLLSPNAVDKLVECSILSSVRGLESPSDHAPVMCVLR 273
>gi|281414526|ref|ZP_06246268.1| exodeoxyribonuclease III [Micrococcus luteus NCTC 2665]
Length = 308
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 36/137 (26%), Gaps = 20/137 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQ 44
+ + + + + ++ GD N + + F+
Sbjct: 172 RFLDEMVRRLSELAAGEGHALVTGDLNVGHTELDIKNWKGNVKKAGFLPEERAYFDRFFG 231
Query: 45 KMDPDGLLI-RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
++ + R K+ + D D + + +
Sbjct: 232 ELGFTDVHRALAGPVPGPYTWWSMRGKAFDNDAGWRIDYHMATADLAERATTAVVDRAPS 291
Query: 104 RRSKLSTHCPLTIEYDF 120
++ S H PL ++Y F
Sbjct: 292 WGTRFSDHAPLVVDYQF 308
>gi|261838799|gb|ACX98565.1| exodeoxyribonuclease [Helicobacter pylori 51]
Length = 250
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ ++ P ++ GD N N I + + +
Sbjct: 127 KKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|256828507|ref|YP_003157235.1| exodeoxyribonuclease III Xth [Desulfomicrobium baculatum DSM 4028]
gi|256577683|gb|ACU88819.1| exodeoxyribonuclease III Xth [Desulfomicrobium baculatum DSM 4028]
Length = 257
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------MDPDGLLIRFPQE-------- 58
Q+++ P V+ GDFN I + + ++ +
Sbjct: 135 AQELRRDKPIVVCGDFNTAHREIDLKNAKANEKTSGFLPIERAWMDRFVAHGYVDTFRRC 194
Query: 59 ----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+++ R + F + S + S HCP+
Sbjct: 195 HGDVEDAYSWWTYRFGARSRNVGW--RIDYFFVSEEL--SSAVRDAWIEADVPGSDHCPV 250
Query: 115 TIEYDFE 121
+ +
Sbjct: 251 GLALELP 257
>gi|218231608|ref|YP_002368543.1| exodeoxyribonuclease III [Bacillus cereus B4264]
gi|218159565|gb|ACK59557.1| exodeoxyribonuclease III [Bacillus cereus B4264]
Length = 252
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 30/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ P + GD N I + + +P
Sbjct: 128 RSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFSSILEEGFIDT 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + R + D I + S
Sbjct: 187 YRYLYPDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|163739851|ref|ZP_02147258.1| exodeoxyribonuclease III [Phaeobacter gallaeciensis BS107]
gi|163743404|ref|ZP_02150784.1| exodeoxyribonuclease III, putative [Phaeobacter gallaeciensis 2.10]
gi|161383398|gb|EDQ07787.1| exodeoxyribonuclease III, putative [Phaeobacter gallaeciensis 2.10]
gi|161386885|gb|EDQ11247.1| exodeoxyribonuclease III [Phaeobacter gallaeciensis BS107]
Length = 262
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 28/133 (21%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W + + ++ GD N D D
Sbjct: 133 MRDWFNAERPEKS--ILVGDLNIAPREDDVWDHKKLLKVVSHTPIEVEHFADVMDAGGWS 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ + + R K D R + S K
Sbjct: 191 DVTRNDIPDGQLYSWWSYRAKDW-DAADKGRRLDHIWATPDIKNAAHSSRVMRDARGWEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFATFDL 262
>gi|152979786|ref|YP_001351880.1| exodeoxyribonuclease III [Janthinobacterium sp. Marseille]
gi|151279863|gb|ABR88273.1| exodeoxyribonuclease III [Janthinobacterium sp. Marseille]
Length = 259
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 21/129 (16%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDPDGLL 52
+ G FVI GD+N N I + + ++ +
Sbjct: 133 HLLELKAQGRDFVICGDWNIAHNEIDLKNFKGNRKNSGFLPEERAWLSRVFDEVGLVDVY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
R C N+ + + + + + + + + S H
Sbjct: 193 RRLHPTTTEECYTWWSNRGQAYAKNVGWRIDYQVATPALAETARSAAIY--KDERFSDHA 250
Query: 113 PLTIEYDFE 121
PLTI+YD++
Sbjct: 251 PLTIDYDWK 259
>gi|310643609|ref|YP_003948367.1| exodeoxyribonuclease iii xth [Paenibacillus polymyxa SC2]
gi|309248559|gb|ADO58126.1| Exodeoxyribonuclease III Xth [Paenibacillus polymyxa SC2]
Length = 254
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 30/132 (22%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + Q++ P +I GD N I + +
Sbjct: 124 DRFRSYL-QQLDAQKPVIICGDLNVAHQEIDLKNAKANYGNAGFTPEERDRMSQLLNAGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ K D ++ T
Sbjct: 183 IDTFRYFYPDRTDVYSWWSYMPKVRERNIGWRIDYFLVSERLRPLLMDASIDCHITG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ ++
Sbjct: 240 -SDHCPVILDLQ 250
>gi|312147931|gb|ADQ30590.1| exodeoxyribonuclease III [Borrelia burgdorferi JD1]
Length = 255
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 22/128 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIG------------DTDDFWQKMDP------DG 50
++ AD + G VI GDFN I + +D
Sbjct: 127 VENLADSLVCDGKNVVICGDFNIAHTEIDLISPDSNRDSPGYYIEETTWLDDFLNKGYVD 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F ++ R ++ F+++ F + L + S
Sbjct: 187 TFRIFNKDPGYYTWWSYRTRARERNMGW--RIDYFIVNEFFKRN--VEKSLILDKVMGSD 242
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 243 HCPVFLEL 250
>gi|289705979|ref|ZP_06502353.1| putative exodeoxyribonuclease III [Micrococcus luteus SK58]
gi|289557316|gb|EFD50633.1| putative exodeoxyribonuclease III [Micrococcus luteus SK58]
Length = 308
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/137 (9%), Positives = 35/137 (25%), Gaps = 20/137 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQ 44
+ + + + + ++ GD N + + F+
Sbjct: 172 RFLDEMVRRLSELAAGEGHALVTGDLNVGHTELDIKNWKGNVKKAGFLPEERAYFDRFFG 231
Query: 45 KMDPDGLLI-RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
++ + R K+ + D + + +
Sbjct: 232 ELGFTDVHRALAGPVPGPYTWWSMRGKAFDNDAGWRIDYHMATAGLAERATTAVVDRAPS 291
Query: 104 RRSKLSTHCPLTIEYDF 120
++ S H PL ++Y F
Sbjct: 292 WGTRFSDHAPLVVDYQF 308
>gi|323342310|ref|ZP_08082542.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463422|gb|EFY08616.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 252
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 35/130 (26%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLI- 53
+++ + P V+ GD N I + + + G +
Sbjct: 128 REYLK-MLDETKPVVLCGDLNVAHKEIDLKNPSANRKNPGFSDQEREQFTNLLDAGFIDS 186
Query: 54 ---RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
P + R + D +I + D D S
Sbjct: 187 FRELHPNAIDRYSWWSYRANARSRNTGWRIDYFVVSERLRNAIEAADILDQVLG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ I+ +F
Sbjct: 243 HCPVMIKLNF 252
>gi|225024988|ref|ZP_03714180.1| hypothetical protein EIKCOROL_01877 [Eikenella corrodens ATCC
23834]
gi|224942218|gb|EEG23427.1| hypothetical protein EIKCOROL_01877 [Eikenella corrodens ATCC
23834]
Length = 257
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 23/128 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G VI GD+N +I + + +
Sbjct: 133 LRELKTQGRDIVICGDWNIAHQNIDLKNWKGNLKNSGFLPEEREWIGKVIVELGWVDIWR 192
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
E +R ++ + + + + ++ K S H P
Sbjct: 193 TLYPEMPGYTWWSQRGQAYAKDVGW--RIDYQMATPALAERARSAHVY--KQEKFSDHAP 248
Query: 114 LTIEYDFE 121
L ++YD+
Sbjct: 249 LVVDYDYP 256
>gi|254491099|ref|ZP_05104280.1| exodeoxyribonuclease III [Methylophaga thiooxidans DMS010]
gi|224463612|gb|EEF79880.1| exodeoxyribonuclease III [Methylophaga thiooxydans DMS010]
Length = 259
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLI 53
+ +G +VI GD+N + + + +M
Sbjct: 133 MQEMKASGRDYVITGDWNIAHKNEDIRNWKGNLKNSGFLPEERAWLDKLFDEMGFVDAFR 192
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
PQ++ R ++ + ++ S R + S H P
Sbjct: 193 ELPQQEHEYTWWSNRGQAWANNVGW--RIDYHILSPSMKGTVKATDIY--RDERFSDHAP 248
Query: 114 LTIEYDF 120
LTI+YD+
Sbjct: 249 LTIDYDY 255
>gi|317179707|dbj|BAJ57495.1| exodeoxyribonuclease [Helicobacter pylori F30]
Length = 250
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 29/121 (23%), Gaps = 23/121 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
++ P ++ GD N N I + + + F
Sbjct: 133 LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDTFRYFYPN 192
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+++ ++ D + + S HCP+ +E
Sbjct: 193 KEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI----YKDILGSDHCPVGLE 248
Query: 118 Y 118
Sbjct: 249 L 249
>gi|288574097|ref|ZP_06392454.1| exodeoxyribonuclease III Xth [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288569838|gb|EFC91395.1| exodeoxyribonuclease III Xth [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 259
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 25/126 (19%), Gaps = 18/126 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ-----------------KMDPDGLLIRF 55
+I G + GD N + + +
Sbjct: 134 ISDRISDGKRVLWVGDMNVAPEEKDVANPKNKAKHVCFHRDIRDLFGTVCQGLVDVFRSH 193
Query: 56 PQEKESTCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
E+ R + D+ D + K S H P+
Sbjct: 194 RPEEGEFSFWDYRVKNALDRNIGWRIDHILASPDLAKLSSDSWVYRDPRGWEKPSDHTPV 253
Query: 115 TIEYDF 120
+D
Sbjct: 254 LASFDL 259
>gi|295099755|emb|CBK88844.1| exodeoxyribonuclease III [Eubacterium cylindroides T2-87]
Length = 249
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 22/133 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
EW K +++ P ++ GD N I + + +
Sbjct: 121 MEWDKAFSNYIQSLDKPVLLTGDLNVANEEIDIKNPKTNRRNAGFTDEERDSFKKNLLTI 180
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+K R K+ +L+ +
Sbjct: 181 LKDSYRTLYPDKVEYSWWSYRFKAREKNAGW--RIDYWLVSEELMPK--VKDSKILTDIY 236
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E +
Sbjct: 237 GSDHCPVQLEIEL 249
>gi|328958150|ref|YP_004375536.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
gi|328674474|gb|AEB30520.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
Length = 253
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 25/128 (19%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+K+ + P ++ GD N +I + ++ F
Sbjct: 131 KKLDSEKPVILCGDLNVAHENIDLKNWKTNQLSAGFSKEERMKFSALLDAGFIDTFRYFY 190
Query: 57 QE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + + R + D + D S HCP+
Sbjct: 191 PDLEGAYTWWNYRFNARKTNAGWRIDYFCVSTRLQDHLQEARILDDIVG----SDHCPV- 245
Query: 116 IEYDFEKG 123
E ++
Sbjct: 246 -ELILKET 252
>gi|319939609|ref|ZP_08013968.1| LPXTG cell wall surface protein [Streptococcus anginosus 1_2_62CV]
gi|319811198|gb|EFW07504.1| LPXTG cell wall surface protein [Streptococcus anginosus 1_2_62CV]
Length = 736
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 9/121 (7%)
Query: 4 QQGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+QG+ L + + +K FV+ GDFN S ++ ++ +
Sbjct: 558 EQGKLLNAFVKEGLKQNPNLKFVLTGDFNDFEFSETAKAVAGNELVN---MMLNHDAADR 614
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD + ++ + + + I + + S H P+ + DF
Sbjct: 615 YSYFYRGSNQSLDNIFVSKNIADKTVFSPVHI----NASFMEEHGRASDHDPVIAQLDFS 670
Query: 122 K 122
+
Sbjct: 671 Q 671
>gi|20808602|ref|NP_623773.1| exonuclease III [Thermoanaerobacter tengcongensis MB4]
gi|20517232|gb|AAM25377.1| Exonuclease III [Thermoanaerobacter tengcongensis MB4]
Length = 258
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 31/120 (25%), Gaps = 23/120 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ + P ++ GD N I + + + F
Sbjct: 135 KLDSVKPVILCGDLNVAHQEIDIKNPAANRRNAGFTDEEREKMTILLNSGFIDTFRYFYP 194
Query: 58 EKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+K+ + + + F++ + Y S HCP+ +
Sbjct: 195 DKKDAYTWWSYMHNAREKNIGW--RVDYFIVSE--RLKDYLIDSQIHSEVMGSDHCPVVL 250
>gi|319790081|ref|YP_004151714.1| exodeoxyribonuclease III Xth [Thermovibrio ammonificans HB-1]
gi|317114583|gb|ADU97073.1| exodeoxyribonuclease III Xth [Thermovibrio ammonificans HB-1]
Length = 259
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 30/132 (22%), Gaps = 21/132 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLI 53
LK + + P + GDFN + + D ++++ GL
Sbjct: 127 LKLFLQESFSPDEPLAVVGDFNVARSELDVYDPAVWRGRPGFMEDERQAFEELLSFGLFD 186
Query: 54 RF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR---RSK 107
F ++ + D R
Sbjct: 187 LFRELHPDEPGYTWWDIETGGFARNRGLRIDYILVTEPLLKRAQECRVLREARRKLGGLL 246
Query: 108 LSTHCPLTIEYD 119
S H PL +
Sbjct: 247 PSDHAPLVAAFR 258
>gi|228906812|ref|ZP_04070681.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis IBL
200]
gi|228852816|gb|EEM97601.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis IBL
200]
Length = 788
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|228919906|ref|ZP_04083261.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228839722|gb|EEM85008.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 788
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|228957450|ref|ZP_04119204.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228802204|gb|EEM49067.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 788
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|229042920|ref|ZP_04190653.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH676]
gi|228726385|gb|EEL77609.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH676]
Length = 788
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|229068731|ref|ZP_04202028.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus F65185]
gi|228714348|gb|EEL66226.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus F65185]
Length = 788
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|229078378|ref|ZP_04210941.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock4-2]
gi|228704919|gb|EEL57342.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock4-2]
Length = 788
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|229108638|ref|ZP_04238249.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock1-15]
gi|228674779|gb|EEL30012.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock1-15]
Length = 788
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|229126482|ref|ZP_04255496.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-Cer4]
gi|228656871|gb|EEL12695.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-Cer4]
Length = 788
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|229149383|ref|ZP_04277619.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus m1550]
gi|228634025|gb|EEK90618.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus m1550]
Length = 788
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|218235001|ref|YP_002365840.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus B4264]
gi|218162958|gb|ACK62950.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus B4264]
Length = 788
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|30019227|ref|NP_830858.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus ATCC 14579]
gi|29894770|gb|AAP08059.1| Endonuclease/Exonuclease/phosphatase family protein [Bacillus
cereus ATCC 14579]
Length = 738
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 623 QLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 679
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 680 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 735
Query: 122 KGN 124
K +
Sbjct: 736 KAS 738
>gi|227502024|ref|ZP_03932073.1| exodeoxyribonuclease III [Corynebacterium accolens ATCC 49725]
gi|227077308|gb|EEI15271.1| exodeoxyribonuclease III [Corynebacterium accolens ATCC 49725]
Length = 269
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 19/131 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL- 51
L ++A + ++ GDFN D +Q ++ GL
Sbjct: 135 QLARYAAGR--AQSKLLLTGDFNIAPRDEDVWDIEAFRGKTHVTEPERAAFQMLEEAGLE 192
Query: 52 -LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ R E + + + D + + + + K S
Sbjct: 193 EVTRRFTEDQRYTYFDYKGMRFHKNEGMRIDFQLASPPLAKHVTGARVDMEERAGEKTSD 252
Query: 111 HCPLTIEYDFE 121
HCPL ++D
Sbjct: 253 HCPLHADFDLP 263
>gi|239917012|ref|YP_002956570.1| exodeoxyribonuclease III [Micrococcus luteus NCTC 2665]
gi|239838219|gb|ACS30016.1| exodeoxyribonuclease III [Micrococcus luteus NCTC 2665]
Length = 308
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 36/137 (26%), Gaps = 20/137 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQ 44
+ + + + + ++ GD N + + F+
Sbjct: 172 RFLDEMVRRLSELAAGEGHALVTGDLNVGHTELDIKNWKGNVKKAGFLPEERAYFDRFFG 231
Query: 45 KMDPDGLLI-RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
++ + R K+ + D D + + +
Sbjct: 232 ELGFTDVHRALAGPVPGPYTWWSMRGKAFDNDAGWRIDYHMATADLAERATTAVVDRAPS 291
Query: 104 RRSKLSTHCPLTIEYDF 120
++ S H PL ++Y F
Sbjct: 292 WGTRFSDHAPLVVDYQF 308
>gi|260062521|ref|YP_003195601.1| exonuclease III [Robiginitalea biformata HTCC2501]
gi|88784086|gb|EAR15256.1| exonuclease III [Robiginitalea biformata HTCC2501]
Length = 254
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 30/122 (24%), Gaps = 23/122 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL-------------------LIRFPQ 57
++ P V+ GD N I +D G +
Sbjct: 136 LRDHKPLVLCGDLNVAHRPIDLKNDKANYNKTAGYTQREIDGMDRLHQSGLIDIFRKRHP 195
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
++ + R + FLI + S HCP+ +E
Sbjct: 196 DEVAYTYWSYRFGARKRNVGW--RLDYFLISPELEGRVAGTPIYH--NIEGSDHCPIGLE 251
Query: 118 YD 119
D
Sbjct: 252 LD 253
>gi|229191862|ref|ZP_04318833.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
gi|228591624|gb|EEK49472.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
Length = 252
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 30/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ P + GD N I + + +P
Sbjct: 128 RSYIK-RLDEKKPVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFSCILEEGFTDT 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + R + D I + S
Sbjct: 187 YRYLYPDQESAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITEAKINSEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|301788284|ref|XP_002929556.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Ailuropoda melanoleuca]
gi|301788286|ref|XP_002929557.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Ailuropoda melanoleuca]
gi|301788288|ref|XP_002929558.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 3
[Ailuropoda melanoleuca]
gi|281345899|gb|EFB21483.1| hypothetical protein PANDA_019762 [Ailuropoda melanoleuca]
Length = 318
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ +S ++
Sbjct: 249 LADSFRHLYPNT-AYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|197303592|ref|ZP_03168630.1| hypothetical protein RUMLAC_02320 [Ruminococcus lactaris ATCC
29176]
gi|197297326|gb|EDY31888.1| hypothetical protein RUMLAC_02320 [Ruminococcus lactaris ATCC
29176]
Length = 250
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 30/128 (23%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + + ++ P ++ GD N I + + +
Sbjct: 127 RAYLKK-LEKKKPVIVTGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTELLDAGFIDT 185
Query: 52 LIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F ++E R + D + S
Sbjct: 186 FRYFYPDQEGIYSWWSYRFSARAKNAGWRIDYFCVSECLKDRLADAKILTEVMG----SD 241
Query: 111 HCPLTIEY 118
HCP+ ++
Sbjct: 242 HCPIELDL 249
>gi|149692696|ref|XP_001505181.1| PREDICTED: similar to APEX nuclease [Equus caballus]
Length = 318
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ +S ++
Sbjct: 249 LADSFRHLYPNT-AYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|15597741|ref|NP_251235.1| exonuclease III [Pseudomonas aeruginosa PAO1]
gi|218891476|ref|YP_002440343.1| exonuclease III [Pseudomonas aeruginosa LESB58]
gi|9948603|gb|AAG05933.1|AE004682_5 exodeoxyribonuclease III [Pseudomonas aeruginosa PAO1]
gi|218771702|emb|CAW27476.1| exodeoxyribonuclease III [Pseudomonas aeruginosa LESB58]
Length = 270
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 24/137 (17%), Gaps = 27/137 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ + K V+ GD N +
Sbjct: 133 LQSLLENSFKPEQALVVMGDINISPEDCDIGIGEENRKRWLKTGKCSFLPEEREWLATLK 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDL 101
E + R++ D L
Sbjct: 193 NWGLVDSFRALNPEVNDRFSWFDYRSRGFEDNPKRGLRIDVILASRVLQSRFKDAGIDYD 252
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +E
Sbjct: 253 LRGMEKPSDHAPIWLEL 269
>gi|306820340|ref|ZP_07453979.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304551669|gb|EFM39621.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 251
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 23/125 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+ + P +I GD N I + + +P F
Sbjct: 131 KNLDAKKPVIICGDMNVAHKEIDLKNPKTNRKNPGFTDEEREKFTLLLDAGFTDTFRYFY 190
Query: 57 QEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+KE+ R + + D + + + S HCP++
Sbjct: 191 PDKENEYSWWSYRFNARKNNTGWRIDYFLVSDRLQEKLTAASIH----QDVFGSDHCPVS 246
Query: 116 IEYDF 120
+E
Sbjct: 247 VELSL 251
>gi|259419109|ref|ZP_05743026.1| exodeoxyribonuclease III [Silicibacter sp. TrichCH4B]
gi|259345331|gb|EEW57185.1| exodeoxyribonuclease III [Silicibacter sp. TrichCH4B]
Length = 333
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 34/124 (27%), Gaps = 18/124 (14%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
E LK A + + +P ++AGD+N + F + ++
Sbjct: 136 MERLKARAAELMAEEMPALMAGDYNIIPQAEDAKRPEAWREDALHRPESRAAFQRIVNLG 195
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + ++ +FL+ + + R K
Sbjct: 196 FTEAFRARTRGPGHYTFWDYQAGAWNRDDGIRIDHFLLTPQAADLLRDCQIDKDIRGREK 255
Query: 108 LSTH 111
S H
Sbjct: 256 PSDH 259
>gi|229141809|ref|ZP_04270337.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST26]
gi|228641645|gb|EEK97948.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST26]
Length = 352
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 226 IRKQQVEFLKEYMNKHYKNGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|126727467|ref|ZP_01743301.1| Endonuclease/exonuclease/phosphatase [Rhodobacterales bacterium
HTCC2150]
gi|126703247|gb|EBA02346.1| Endonuclease/exonuclease/phosphatase [Rhodobacterales bacterium
HTCC2150]
Length = 334
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 27/142 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKI----------------------NSIGDTDDF 42
Q WL+ + + P ++ GDFN + D
Sbjct: 192 QCIWLRARVAEHLAAKTPLIVLGDFNDGPGLDEYERLFGRSGVEIVLGEGADDEKLYDPH 251
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK-----NFLIDNSFSIVSYD 97
Q+ L F + + + + LDY ++ D K + Y
Sbjct: 252 AQRALSQRLPANFTTSRFFLRHEKRYLSALLDYIMVSSDLKEKNPAWHIWHPFDDPACYG 311
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
+L S H P+T++ D
Sbjct: 312 DLNLREALLAASDHFPVTLDID 333
>gi|16081140|ref|NP_391968.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312070|ref|ZP_03593917.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316395|ref|ZP_03598200.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221321308|ref|ZP_03602602.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325591|ref|ZP_03606885.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. SMY]
gi|585113|sp|P37454|EXOA_BACSU RecName: Full=Exodeoxyribonuclease
gi|467372|dbj|BAA05218.1| 3'-exo-deoxyribonuclease [Bacillus subtilis]
gi|2636635|emb|CAB16125.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
Length = 252
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 33/132 (25%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E L + + + P ++ GD N I + + +
Sbjct: 125 EALLSYILE-LDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAFTRFLEAGF 183
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + R + F++ S + +
Sbjct: 184 VDSFRHVYPDLEGAYSWWSYRAGARDRNIGW--RIDYFVVSESLKEQI--EDASISADVM 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ + +
Sbjct: 240 GSDHCPVELIIN 251
>gi|110639863|ref|YP_680073.1| exodeoxyribonuclease III [Cytophaga hutchinsonii ATCC 33406]
gi|110282544|gb|ABG60730.1| exodeoxyribonuclease III [Cytophaga hutchinsonii ATCC 33406]
Length = 254
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 30/123 (24%), Gaps = 18/123 (14%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIRF 55
+ + K ++ GD+N +I + + D +
Sbjct: 132 YISEVRKKIPNLIVCGDYNICHKAIDIHNPKSNAKTSGFLPEEREWMSKFFDSGFVDAFR 191
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+E ++ + + L + S HCP+
Sbjct: 192 HFNEEPHHYTWWSYRAGSRGKNLGWRIDYHSVTQEMVGKLKRSVILP--DAIHSDHCPVL 249
Query: 116 IEY 118
+E
Sbjct: 250 LEI 252
>gi|261393405|emb|CAX51041.1| putative exodeoxyribonuclease [Neisseria meningitidis 8013]
Length = 259
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDVPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVVEYDY 256
>gi|206976682|ref|ZP_03237587.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus
H3081.97]
gi|217962556|ref|YP_002341128.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus AH187]
gi|206745168|gb|EDZ56570.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus
H3081.97]
gi|217063640|gb|ACJ77890.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus AH187]
Length = 352
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 226 IRKQQVEFLKEYMNKHYKNGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|163750216|ref|ZP_02157458.1| exodeoxyribonuclease III [Shewanella benthica KT99]
gi|161330072|gb|EDQ01056.1| exodeoxyribonuclease III [Shewanella benthica KT99]
Length = 268
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 40/143 (27%), Gaps = 26/143 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q + L + ++ I GD N +
Sbjct: 126 KRQFYKDLMTYLNENHTPDEDIAIIGDINISPVDLDIGIGEPNAKRWLRTGKCSFQVEER 185
Query: 41 DFWQKMDPDGLLIRF----PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ + + GLL F PQ E R+K +D + D + +V
Sbjct: 186 EWLKTLMDWGLLDTFRELHPQRTERYSWFDYRSKGFVDNRGLRIDVVLATKSLNERLVES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEYD 119
D K S H P+ +
Sbjct: 246 DVDYDLRAIEKPSDHAPIWSSFS 268
>gi|15594879|ref|NP_212668.1| exodeoxyribonuclease III (exoA) [Borrelia burgdorferi B31]
gi|195941668|ref|ZP_03087050.1| exodeoxyribonuclease III (exoA) [Borrelia burgdorferi 80a]
gi|216264267|ref|ZP_03436259.1| exodeoxyribonuclease III [Borrelia burgdorferi 156a]
gi|223888847|ref|ZP_03623438.1| exodeoxyribonuclease III [Borrelia burgdorferi 64b]
gi|224532684|ref|ZP_03673301.1| exodeoxyribonuclease III [Borrelia burgdorferi WI91-23]
gi|225548581|ref|ZP_03769628.1| exodeoxyribonuclease III [Borrelia burgdorferi 94a]
gi|226321012|ref|ZP_03796557.1| exodeoxyribonuclease III [Borrelia burgdorferi 29805]
gi|226321840|ref|ZP_03797366.1| exodeoxyribonuclease III [Borrelia burgdorferi Bol26]
gi|2688454|gb|AAC66902.1| exodeoxyribonuclease III (exoA) [Borrelia burgdorferi B31]
gi|215980740|gb|EEC21547.1| exodeoxyribonuclease III [Borrelia burgdorferi 156a]
gi|223885663|gb|EEF56762.1| exodeoxyribonuclease III [Borrelia burgdorferi 64b]
gi|224512302|gb|EEF82686.1| exodeoxyribonuclease III [Borrelia burgdorferi WI91-23]
gi|225370611|gb|EEH00047.1| exodeoxyribonuclease III [Borrelia burgdorferi 94a]
gi|226233029|gb|EEH31782.1| exodeoxyribonuclease III [Borrelia burgdorferi Bol26]
gi|226233613|gb|EEH32349.1| exodeoxyribonuclease III [Borrelia burgdorferi 29805]
Length = 255
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 22/128 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIG------------DTDDFWQKMDP------DG 50
++ AD + G VI GDFN I + +D
Sbjct: 127 VENLADSLVCDGKNVVICGDFNIAHTEIDLISPDSNRDSPGYYIEETTWLDDFLNKGYVD 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F ++ R ++ F+++ F + L + S
Sbjct: 187 TFRIFNKDPGYYTWWSYRTRARERNMGW--RIDYFIVNEFFKRN--VEKSLILDKVMGSD 242
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 243 HCPVFLEL 250
>gi|326383425|ref|ZP_08205112.1| exodeoxyribonuclease III Xth [Gordonia neofelifaecis NRRL B-59395]
gi|326197831|gb|EGD55018.1| exodeoxyribonuclease III Xth [Gordonia neofelifaecis NRRL B-59395]
Length = 260
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 10/120 (8%), Positives = 23/120 (19%), Gaps = 18/120 (15%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDGLLIRFPQEK 59
V+AGD+N D + + + +
Sbjct: 141 DPAAQVVLAGDWNVAPTDDDVWDPEYFESRTHTSEEERAAFRHFIEGGFVDSAAPYTTDP 200
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ + + D + S H P+ +
Sbjct: 201 KTYTFWDYQAGRFARNEGMRIDFALCSPALDDRVYDAFIDRAARAAEGASDHAPIVFDLS 260
>gi|310659330|ref|YP_003937051.1| exodeoxyribonuclease III [Clostridium sticklandii DSM 519]
gi|308826108|emb|CBH22146.1| exodeoxyribonuclease III [Clostridium sticklandii]
Length = 250
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+++ + + P ++ GD N N I + + +P
Sbjct: 127 RRYLND-LDEKKPVIVCGDLNVAHNEIDLKNPKSNRKNPGFSDEERGKFTNLLDSGFIDS 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + E R + + D + + + S
Sbjct: 186 FRFFYPDATEMYTWWSYRFNARENNAGWRIDYFCVSNKLKNELKNAEIHMDILG----SD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVVLEI 249
>gi|302549548|ref|ZP_07301890.1| endonuclease/exonuclease/phosphatase [Streptomyces
viridochromogenes DSM 40736]
gi|302467166|gb|EFL30259.1| endonuclease/exonuclease/phosphatase [Streptomyces
viridochromogenes DSM 40736]
Length = 301
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 13/103 (12%), Positives = 22/103 (21%), Gaps = 5/103 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+P ++ GDFN + D D + R
Sbjct: 203 DRSLPVIVTGDFNAGAHDNRVYDLMLDIGLVDAWDAAASRGPAYGTYHGYRGP-----RP 257
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R L + + + S H P+
Sbjct: 258 GGRRIDWILTTPGVTTHWAGMNTFSRDGTYPSDHLPVQASMTL 300
>gi|315498514|ref|YP_004087318.1| exodeoxyribonuclease iii xth [Asticcacaulis excentricus CB 48]
gi|315416526|gb|ADU13167.1| exodeoxyribonuclease III Xth [Asticcacaulis excentricus CB 48]
Length = 263
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 22/135 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDP 48
+ L+ A + + V++GDFN + + +
Sbjct: 128 KRLQARAKEILAFEEISVLSGDFNTIPTKSDLYRESAWLDDALYQPETRAAYQSLKNLGY 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT----R 104
P E + + I D+ + + S++
Sbjct: 188 SDACDLMPPEGNRYTFWDYQAGAWQKNEGIRIDHHLLSPQAADRLKSFEIHKDARGRTHD 247
Query: 105 RSKLSTHCPLTIEYD 119
+K S H P+ +E D
Sbjct: 248 DAKPSDHVPVGVELD 262
>gi|225867057|ref|YP_002752435.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus
03BB102]
gi|225788608|gb|ACO28825.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus 03BB102]
Length = 352
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK + ++ + G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKAYMNKHYEKGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|237807677|ref|YP_002892117.1| exodeoxyribonuclease III [Tolumonas auensis DSM 9187]
gi|237499938|gb|ACQ92531.1| exodeoxyribonuclease III [Tolumonas auensis DSM 9187]
Length = 268
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 30/137 (21%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
L + Q VI GD N + + +
Sbjct: 131 RDLLNYLQQNHTPDEDIVIMGDMNISSTDLDIGIGEANRKRWLQTGKCSFLPEEREWLNE 190
Query: 45 KMDPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + Q +S R++ D + D +
Sbjct: 191 LLAWGFVDTWRSQNPDSNEHFSWFDYRSRGFDDNRGLRIDLLLATSVLQQRLQQTGIDYE 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 251 IRGMEKPSDHAPIWAEF 267
>gi|218889810|ref|YP_002438674.1| predicted extracellular nuclease [Pseudomonas aeruginosa LESB58]
gi|218770033|emb|CAW25795.1| predicted extracellular nuclease [Pseudomonas aeruginosa LESB58]
Length = 780
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 21/139 (15%)
Query: 3 SQQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ + L W D +I GD N + L+ R +
Sbjct: 636 ARAAQALVDWLAGDPTGAKEPDRLIIGDLNSYAKEDPVN--VIRSAGYTDLVARQAGAGK 693
Query: 61 STCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDT 103
V LD+ + + + + ++ Y+ S +
Sbjct: 694 GYSYVFSGQSGYLDHALANASLARQVRGAVEWHINADEPRVLDYNVEFKTPRQQDSLYNA 753
Query: 104 RRSKLSTHCPLTIEYDFEK 122
+ S H P+ I D +
Sbjct: 754 EPYRASDHDPVVIGIDLRR 772
>gi|118480154|ref|YP_897305.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
thuringiensis str. Al Hakam]
gi|196047577|ref|ZP_03114786.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus
03BB108]
gi|118419379|gb|ABK87798.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
thuringiensis str. Al Hakam]
gi|196021611|gb|EDX60309.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus
03BB108]
Length = 352
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK + ++ + G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKAYMNKHYEKGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|107103426|ref|ZP_01367344.1| hypothetical protein PaerPA_01004496 [Pseudomonas aeruginosa PACS2]
Length = 780
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 21/139 (15%)
Query: 3 SQQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ + L W D +I GD N + L+ R +
Sbjct: 636 ARAAQALVDWLAGDPTGAKEPDRLIIGDLNSYAKEDPVN--VIRSAGYTDLVARQAGAGK 693
Query: 61 STCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDT 103
V LD+ + + + + ++ Y+ S +
Sbjct: 694 GYSYVFSGQSGYLDHALANASLARQVRGAVEWHINADEPRVLDYNVEFKTPRQQDSLYNA 753
Query: 104 RRSKLSTHCPLTIEYDFEK 122
+ S H P+ I D +
Sbjct: 754 EPYRASDHDPVVIGIDLRR 772
>gi|220911966|ref|YP_002487275.1| exodeoxyribonuclease III Xth [Arthrobacter chlorophenolicus A6]
gi|219858844|gb|ACL39186.1| exodeoxyribonuclease III Xth [Arthrobacter chlorophenolicus A6]
Length = 277
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 21/138 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMD 47
+ + + + K ++ GD N + + F + +
Sbjct: 140 RFLDAMSTRLPELSKHSDHALVVGDLNVAHTPLDIRNWKGNLKKAGFLPDERAYFDRFLG 199
Query: 48 PDGLLIRFP-----QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
D + R K+ + D + S S
Sbjct: 200 EDIGWHDVHRTMSGEMDGPYTWWSWRGKAFDNDAGWRIDYHLATPALAASATSAVVDRAA 259
Query: 103 TRRSKLSTHCPLTIEYDF 120
T ++ S H PL ++Y
Sbjct: 260 TYDTRFSDHAPLVVDYQL 277
>gi|157374807|ref|YP_001473407.1| exonuclease III [Shewanella sediminis HAW-EB3]
gi|157317181|gb|ABV36279.1| exodeoxyribonuclease III [Shewanella sediminis HAW-EB3]
Length = 268
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 30/137 (21%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L + ++ I GD N +
Sbjct: 131 KDLMVYLNEHHTPDEDIAIIGDINISPVDLDIGIGAPNAKRWLKTGKCSFQPEEREWLKT 190
Query: 43 WQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
E+ E R+K +D + D + +V D
Sbjct: 191 LMDWGLVDTFRELHPERSERYSWFDYRSKGFVDNRGLRIDVVLATKSLAERLVESDVDYE 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 251 LRGIEKPSDHAPIWSTF 267
>gi|91792822|ref|YP_562473.1| exonuclease III [Shewanella denitrificans OS217]
gi|91714824|gb|ABE54750.1| Exodeoxyribonuclease III [Shewanella denitrificans OS217]
Length = 269
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 33/138 (23%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TDDFWQK 45
+ L D I GD N + ++
Sbjct: 131 QDLMAHLDANHSPDEDIAIIGDINISPQDLDIGIGEVNAKRWLKTGKCSFQPEEREWLAC 190
Query: 46 MDPDGLLI----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G + P ++ R+K D + D + ++V D
Sbjct: 191 LLDWGFIDSFRLLHPTREQRYSWFDYRSKGFDDNRGLRIDVILITASMTANLVESDVDYD 250
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 251 LRGIEKPSDHAPIWSTFS 268
>gi|81299809|ref|YP_400017.1| hypothetical protein Synpcc7942_1000 [Synechococcus elongatus PCC
7942]
gi|81168690|gb|ABB57030.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
Length = 1076
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 9/123 (7%)
Query: 5 QGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + ++ + + ++ ++ GDFN D + + E+
Sbjct: 831 QSQAVQDYVNGRLGNDPTAKVIVLGDFNEFEFVSPVRDLAANTGLTNLTELLPENER--Y 888
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + N S+D+ ++ N I + + + S H P+ +
Sbjct: 889 TFIFQGNSQSIDHILVSGSLANR-----AEIDIVNVNTEFAESLQASDHDPVLARFTIAA 943
Query: 123 GNV 125
NV
Sbjct: 944 PNV 946
>gi|56750554|ref|YP_171255.1| hypothetical protein syc0545_d [Synechococcus elongatus PCC 6301]
gi|56685513|dbj|BAD78735.1| hypothetical protein [Synechococcus elongatus PCC 6301]
Length = 1088
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 40/123 (32%), Gaps = 9/123 (7%)
Query: 5 QGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + ++ + + ++ ++ GDFN D + + E+
Sbjct: 843 QSQAVQDYVNGRLGNDPTAKVIVLGDFNEFEFVSPVRDLAANTGLTNLTELLPENER--Y 900
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + N S+D+ ++ N I + + + S H P+ +
Sbjct: 901 TFIFQGNSQSIDHILVSGSLANR-----AEIDIVNVNTEFAESLQASDHDPVLARFTIAA 955
Query: 123 GNV 125
NV
Sbjct: 956 PNV 958
>gi|42525008|ref|NP_970388.1| exodeoxyribonuclease [Bdellovibrio bacteriovorus HD100]
gi|39577219|emb|CAE81042.1| exodeoxyribonuclease [Bdellovibrio bacteriovorus HD100]
Length = 257
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 32/132 (24%), Gaps = 23/132 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKM 46
+K K G +I GDFN I + F K+
Sbjct: 128 CAAAEKRLQALRKKGREVIICGDFNIAHKEIDLRNPKTNMKNAGFLPEERAWMTRFLDKL 187
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ +F Q E R D + S + +
Sbjct: 188 EWVDSFRKFEQGPEHYTWWSYRPGVREKNIGWRLDYFLVNKEASDRLKAAS----HCPDV 243
Query: 107 KLSTHCPLTIEY 118
S HCP+ +
Sbjct: 244 MGSDHCPVRLTL 255
>gi|73539900|ref|YP_294420.1| AP endonuclease [Ralstonia eutropha JMP134]
gi|72117313|gb|AAZ59576.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Ralstonia
eutropha JMP134]
Length = 258
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 37/143 (25%), Gaps = 28/143 (19%)
Query: 3 SQQG-----EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------- 49
QQ E Q +G V+ GD N I + +
Sbjct: 119 RQQAKFRFMEAFLPHLLQLKASGREIVLCGDVNIAHKEIDIKNWKGNLKNSGFLPEERAW 178
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ + E R ++ L + ++
Sbjct: 179 IGQLFDMHGYVDVFRQLDPRPEQYTWWSNRGQAYAKNVGW--RIDYHLATPKIAGTAHVC 236
Query: 99 SDLDTRRSKLSTHCPLTIEYDFE 121
S + K S H PL+I+Y++
Sbjct: 237 SIY--KDEKFSDHAPLSIDYNYP 257
>gi|329769257|ref|ZP_08260674.1| exodeoxyribonuclease [Gemella sanguinis M325]
gi|328839251|gb|EGF88834.1| exodeoxyribonuclease [Gemella sanguinis M325]
Length = 254
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 28/122 (22%), Gaps = 23/122 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
+ ++ GD N I + + F +
Sbjct: 133 LNKDKGVIVCGDLNVAHTEIDLKNPKTNVKNAGFTPEEREKFTKLLDAGFIDTFRYFNPD 192
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ R + + D D +VS + S HCP+ +
Sbjct: 193 LTGAYSWWSYRFNARKNNSGWRIDYFLVSKDLKKYLVSAKIHNDIFG----SDHCPVELV 248
Query: 118 YD 119
D
Sbjct: 249 LD 250
>gi|260881707|ref|ZP_05405068.2| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
gi|260848221|gb|EEX68228.1| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
Length = 253
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 29/133 (21%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
+ + + + P ++ GD N I + + ++ G
Sbjct: 126 DAFRAYLVA-LDAKKPVIVCGDLNVAHTEIDLKNPKTNHHNAGFTDEERGKFTELLDAGF 184
Query: 52 LIRFPQ----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ F K+ F+
Sbjct: 185 IDTFRALYPDRTGIYTWWSYLRKARDTNAGW--RIDYFVTSARLREKIA--DATIHNEVF 240
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E
Sbjct: 241 GSDHCPVGLELRL 253
>gi|283458671|ref|YP_003363306.1| exonuclease III [Rothia mucilaginosa DY-18]
gi|283134721|dbj|BAI65486.1| exonuclease III [Rothia mucilaginosa DY-18]
Length = 291
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 30/131 (22%), Gaps = 20/131 (15%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------QKMDPDGLLI-- 53
+ K +I GD N + + + G
Sbjct: 161 RMPELAKHSDHVLIVGDLNVGHTELDIKNWKANQKRAGFLPEERAYFDRFFGDIGYRDVA 220
Query: 54 --RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
Q R K+ + D + S V + + S H
Sbjct: 221 RELAGQVPGPYTWWSYRGKAFDNDAGWRIDYHMATPALAESAVEAVVDRAASYDERFSDH 280
Query: 112 CPLTIEYDFEK 122
PL ++Y +
Sbjct: 281 APLVVDYRIGE 291
>gi|261252552|ref|ZP_05945125.1| exodeoxyribonuclease III [Vibrio orientalis CIP 102891]
gi|260935943|gb|EEX91932.1| exodeoxyribonuclease III [Vibrio orientalis CIP 102891]
Length = 268
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 33/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q L + + ++ GD N
Sbjct: 126 KRQFYSDLMTYLNDHHSNDEQLIVMGDINISPIDADIGIGEPNRKRWLKTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ + + G + F Q R+K D + D + +
Sbjct: 186 EWLKTLLDWGFVDTFRQIHPDVNDRFSWFDYRSKGFPDNRGLRIDVVLATPKLAEKCIES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
D K S H P+ +
Sbjct: 246 DVDYELRGIEKPSDHAPIWSTF 267
>gi|317014940|gb|ADU82376.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
Length = 250
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ ++ P ++ GD N N I + + +
Sbjct: 127 KKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKNVGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|310826147|ref|YP_003958504.1| exodeoxyribonuclease III [Eubacterium limosum KIST612]
gi|308737881|gb|ADO35541.1| exodeoxyribonuclease III [Eubacterium limosum KIST612]
Length = 254
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 28/124 (22%), Gaps = 22/124 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDGLLIR 54
+ + G +I GD N + + + +
Sbjct: 133 VNALVAQGKKVIICGDVNTAHTEMDLKNPKSNAKRSGFLPMEREWLDHFFENGYVDTYRH 192
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ R + + D + + T S HCP+
Sbjct: 193 LHPDTVEYSWWSYRFNARANNAGWRIDYFFVSDNAIDMVKDAAIHTEVTG----SDHCPV 248
Query: 115 TIEY 118
+IE
Sbjct: 249 SIEI 252
>gi|255327369|ref|ZP_05368443.1| exodeoxyribonuclease III [Rothia mucilaginosa ATCC 25296]
gi|255295649|gb|EET74992.1| exodeoxyribonuclease III [Rothia mucilaginosa ATCC 25296]
Length = 291
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 30/131 (22%), Gaps = 20/131 (15%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------QKMDPDGLLI-- 53
+ K +I GD N + + + G
Sbjct: 161 RMPELAKHSDHVLIVGDLNVGHTELDIKNWKANQKRAGFLPEERAYFDRFFGDIGYRDVA 220
Query: 54 --RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
Q R K+ + D + S V + + S H
Sbjct: 221 RELAGQVPGPYTWWSYRGKAFDNDAGWRIDYHMATPALAESAVEAVVDRAASYDERFSDH 280
Query: 112 CPLTIEYDFEK 122
PL ++Y +
Sbjct: 281 APLVVDYRIGE 291
>gi|196039392|ref|ZP_03106697.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus NVH0597-99]
gi|196029552|gb|EDX68154.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus NVH0597-99]
Length = 352
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK + ++ + G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKAYMNKHYEKGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|152996388|ref|YP_001341223.1| exodeoxyribonuclease III [Marinomonas sp. MWYL1]
gi|150837312|gb|ABR71288.1| exodeoxyribonuclease III [Marinomonas sp. MWYL1]
Length = 289
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 14/141 (9%), Positives = 27/141 (19%), Gaps = 28/141 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L ++ ++ GD N +
Sbjct: 150 LMEYLAAH-SPDEKIIVMGDINISPTDLDIGIGEPNAKRWLKTGKCSFLPEEREWFATLA 208
Query: 45 KMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDL 101
+ K R+K D + N + D
Sbjct: 209 NWGLTDTYRQLNPTKNDRFSWFDYRSKGFEDTPKRGLRIDVIMASNGLMPYLENSDVDYD 268
Query: 102 DTRRSKLSTHCPLTIEYDFEK 122
K S H P+ ++ +
Sbjct: 269 LRALEKPSDHAPIWTSFNLSE 289
>gi|223278400|ref|NP_788782.2| DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|113912167|gb|AAI22611.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Bos taurus]
gi|296483354|gb|DAA25469.1| DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
Length = 318
Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ S ++
Sbjct: 249 LTDSFRHLYPNT-AYAYTFWTYMMNARSKNVGWRLDYFLLSQSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|218249629|ref|YP_002375040.1| exodeoxyribonuclease III [Borrelia burgdorferi ZS7]
gi|218164817|gb|ACK74878.1| exodeoxyribonuclease III [Borrelia burgdorferi ZS7]
Length = 255
Score = 61.8 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 22/128 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIG------------DTDDFWQKMDP------DG 50
++ AD + G VI GDFN I + +D
Sbjct: 127 VENLADSLVCDGKNVVICGDFNIAHTEIDLISPDSNRDSPGYYIEETTWLDDFLNKGYVD 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F ++ R ++ F+++ F + L + S
Sbjct: 187 TFRIFNKDPGYYTWWSYRTRARERNMGW--RIDYFIVNEFFKRN--VEKSLILDKVMGSD 242
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 243 HCPVFLEL 250
>gi|228990178|ref|ZP_04150148.1| Endonuclease/exonuclease/phosphatase [Bacillus pseudomycoides DSM
12442]
gi|228769541|gb|EEM18134.1| Endonuclease/exonuclease/phosphatase [Bacillus pseudomycoides DSM
12442]
Length = 788
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + K P VI GD N S + M ++ ++
Sbjct: 673 QLAQEANNFVKEIQKRDVNAPVVIVGDMNDFEFSKPLQALKAENMQD---MLETVSKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N LD+ ++ + + + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHDGNAQVLDHILVTNNIAPHTVVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|228996264|ref|ZP_04155909.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides Rock3-17]
gi|229003931|ref|ZP_04161737.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides Rock1-4]
gi|228757300|gb|EEM06539.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides Rock1-4]
gi|228763456|gb|EEM12358.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides Rock3-17]
Length = 788
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + K P VI GD N S + M ++ ++
Sbjct: 673 QLAQEANNFVKEIQKRDVNAPVVIVGDMNDFEFSKPLQALKAENMQD---MLETVSKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N LD+ ++ + + + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHDGNAQVLDHILVTNNIAPHTVVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|317509131|ref|ZP_07966757.1| exodeoxyribonuclease III [Segniliparus rugosus ATCC BAA-974]
gi|316252567|gb|EFV12011.1| exodeoxyribonuclease III [Segniliparus rugosus ATCC BAA-974]
Length = 267
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 32/129 (24%), Gaps = 21/129 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------------------FWQKMDPDG 50
++ + +I GD+N + + F + D
Sbjct: 137 EYLKPLARKRRDVLICGDWNIAHTELDIKNWKGNLKASGFLPHERAWLSEVFGEGSDWTD 196
Query: 51 LLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ F + R ++ + D + + + S
Sbjct: 197 VQRSFHPGEAGPYSWWSFRGQAFDNDSGWRIDYHVANKQLAKRAARVVTQRAERYDLRWS 256
Query: 110 THCPLTIEY 118
H P+ +EY
Sbjct: 257 DHAPVIVEY 265
>gi|281417190|ref|ZP_06248210.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
gi|281408592|gb|EFB38850.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
Length = 251
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 23/121 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
+K P ++ GD N I + + F +
Sbjct: 134 LKAKKPVIVCGDMNVAHKEIDLKNPESNRRSAGFTDEERAKFTELLNAGFIDTFRFFYPD 193
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + D + +VS D S HCP+ ++
Sbjct: 194 KTGAYTWWSYMFNARARNAGWRIDYFCVSEELKDRLVSASIHD----DVMGSDHCPVELQ 249
Query: 118 Y 118
Sbjct: 250 I 250
>gi|302345223|ref|YP_003813576.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
gi|302150206|gb|ADK96468.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
Length = 249
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 25/119 (21%), Gaps = 22/119 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ P ++ GD N I + +
Sbjct: 132 KLDEKKPVIVCGDMNVAHQEIDLKNPKTNHKNAGFTDEEREKMTQLLSNGFIDTFRTLYP 191
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
E+ + R ++ D + S HCP+ I
Sbjct: 192 EQVTYSWWSYRFRAREKNTGWRIDYFLISERLKDRLEDAKIHTEIMG----SDHCPVEI 246
>gi|109082640|ref|XP_001090240.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 8
[Macaca mulatta]
gi|90078218|dbj|BAE88789.1| unnamed protein product [Macaca fascicularis]
Length = 318
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 249 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|291522762|emb|CBK81055.1| exodeoxyribonuclease III [Coprococcus catus GD/7]
Length = 258
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 33/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ P V+ GD N I + + +
Sbjct: 134 RNYLKT-LEQTKPVVMCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKMTELLAAGFIDT 192
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + R + + F++ ++ S + S
Sbjct: 193 FRYFYPDKTGEYSWWSYRFNARKNNAGW--RIDYFIVSDALKE--RLISASIHQEIFGSD 248
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 249 HCPVELEL 256
>gi|221218058|ref|ZP_03589524.1| exodeoxyribonuclease III [Borrelia burgdorferi 72a]
gi|224533538|ref|ZP_03674127.1| exodeoxyribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225549668|ref|ZP_03770634.1| exodeoxyribonuclease III [Borrelia burgdorferi 118a]
gi|221192006|gb|EEE18227.1| exodeoxyribonuclease III [Borrelia burgdorferi 72a]
gi|224513211|gb|EEF83573.1| exodeoxyribonuclease III [Borrelia burgdorferi CA-11.2a]
gi|225369945|gb|EEG99392.1| exodeoxyribonuclease III [Borrelia burgdorferi 118a]
gi|312149695|gb|ADQ29766.1| exodeoxyribonuclease III [Borrelia burgdorferi N40]
Length = 255
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 22/128 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIG------------DTDDFWQKMDP------DG 50
++ AD + G VI GDFN I + +D
Sbjct: 127 VENLADSLVCDGKNVVICGDFNIAHTEIDLISPDSNRDSPGYYIEETTWLDDFLNKGYVD 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F ++ R ++ F+++ F + L + S
Sbjct: 187 TFRIFNKDPGYYTWWSYRTRARERNMGW--RIDYFIVNEFFKRN--VEKSLILDKVMGSD 242
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 243 HCPVFLEL 250
>gi|49481107|ref|YP_039092.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|49332663|gb|AAT63309.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
thuringiensis serovar konkukian str. 97-27]
Length = 352
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK + ++ + G ++ GD+N+ ++ + +D + K PD L+ +
Sbjct: 226 IRKQQVEYLKAYMNKHYEKGDYVIMGGDWNQLVSDVQLSDPKFVKERPDWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ +L S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKNLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|288803025|ref|ZP_06408461.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
gi|288334542|gb|EFC72981.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
Length = 249
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 26/119 (21%), Gaps = 22/119 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ P ++ GD N I + + +
Sbjct: 132 KLDEKKPVIVCGDMNVAHQEIDLKNPKTNRKNAGFTDEEREKMTQLLSNGFIDTFRTLYP 191
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
E+ + R ++ D + S HCP+ I
Sbjct: 192 EQVTYSWWSYRFRAREKNTGWRIDYFLISERLKDRLEDAKIHTEIMG----SDHCPVEI 246
>gi|167957331|ref|ZP_02544405.1| exonuclease III [candidate division TM7 single-cell isolate TM7c]
Length = 265
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 34/138 (24%), Gaps = 25/138 (18%)
Query: 2 LSQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD------------------ 41
L Q +W K W + +K+++ P + GD N +
Sbjct: 132 LRHQ-KWDKAWLEYMKKLESIKPVLFCGDLNVAHTEDDLANPKPNIGKHGFTNEERAGFD 190
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + F + + D + I
Sbjct: 191 AFIQSGFKDTFRIFTKGNGYYSWWTHWANARARNIGWRIDYWLASEKLANKITEAQIHPD 250
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+++ D
Sbjct: 251 IMG----SDHCPVSVTID 264
>gi|126724355|ref|ZP_01740198.1| exodeoxyribonuclease III, putative [Rhodobacterales bacterium
HTCC2150]
gi|126705519|gb|EBA04609.1| exodeoxyribonuclease III, putative [Rhodobacterales bacterium
HTCC2150]
Length = 262
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 32/135 (23%), Gaps = 24/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMD 47
+ ++ W + T ++ GD N D + D
Sbjct: 131 KDMRDWGQSEKPTKS--ILVGDLNIAPLEDDVWDHKKLLKVVSHTPLEVEKLAEVQAAAD 188
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRR 105
+ E + R D R + + + S
Sbjct: 189 WVDVTRADIPEGKLYSWWSYR-ARDWDTADKGRRLDHVWATSDIAKSGHSSRVIRDARGW 247
Query: 106 SKLSTHCPLTIEYDF 120
K S H P+ E+D
Sbjct: 248 EKPSDHAPIITEFDL 262
>gi|114707701|ref|ZP_01440596.1| putative exodeoxyribonuclease iii protein [Fulvimarina pelagi
HTCC2506]
gi|114536945|gb|EAU40074.1| putative exodeoxyribonuclease iii protein [Fulvimarina pelagi
HTCC2506]
Length = 267
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 31/129 (24%), Gaps = 21/129 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDGLL 52
+ + G+ ++ GD N + D +
Sbjct: 139 MRAEGEAGVSALLCGDLNIAPYESDVWSHKQMLKIVSHTPVETSGLLTAMSEGGWTDLMR 198
Query: 53 IRFPQEKESTCNVIKRNKSSL-DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
P E++ R K D+ D + + + + S H
Sbjct: 199 RHVPMEEKLFTWWSYRAKDWAASNRGRRLDHVWGSADLAARLSDVNVLTDARGWERPSDH 258
Query: 112 CPLTIEYDF 120
P+T +
Sbjct: 259 VPVTASFAL 267
>gi|186474828|ref|YP_001856298.1| exodeoxyribonuclease III Xth [Burkholderia phymatum STM815]
gi|184191287|gb|ACC69252.1| exodeoxyribonuclease III Xth [Burkholderia phymatum STM815]
Length = 259
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/141 (12%), Positives = 39/141 (27%), Gaps = 31/141 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++ ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELSREREVIVCGDVNIVHKEIDIKNWKGNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + Q E R ++ + + +
Sbjct: 177 WLTKLFDEVGYVDVFRTLDQRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAATAKR 234
Query: 98 QSDLDTRRSKLSTHCPLTIEY 118
R K S H P+T++Y
Sbjct: 235 VDVF--RDIKFSDHAPVTVDY 253
>gi|88860007|ref|ZP_01134646.1| exodeoxyribonuclease III [Pseudoalteromonas tunicata D2]
gi|88818001|gb|EAR27817.1| exodeoxyribonuclease III [Pseudoalteromonas tunicata D2]
Length = 267
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/142 (10%), Positives = 28/142 (19%), Gaps = 27/142 (19%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------T 39
+Q + L + + V+ GD N
Sbjct: 126 KEQFYKDLMTYLASQ-DPASQLVVMGDINISPLDKDIGIGEVNAKRWLKTGKCSFQPIER 184
Query: 40 DDFWQK--MDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + + R+K D + D + V
Sbjct: 185 QWLADLMAWGFTDTFRQIHPDTNAHFSWFDYRSKGFDDNRGLRIDVILATASLAARCVDA 244
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 245 GIDYELRAIDKPSDHAPIWASF 266
>gi|127513190|ref|YP_001094387.1| exonuclease III [Shewanella loihica PV-4]
gi|126638485|gb|ABO24128.1| Exodeoxyribonuclease III [Shewanella loihica PV-4]
Length = 269
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 33/134 (24%), Gaps = 25/134 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TDDFWQK 45
+ L + Q I GD N + ++ Q
Sbjct: 131 QDLMHYLQQHHSPDEDIAIIGDINISPIDLDIGIGEVNAKRWLKTGKCSFQPEEREWLQT 190
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ GL+ F Q + R+K D + D + + D
Sbjct: 191 LLDWGLVDTFRQLHPTRSERYSWFDYRSKGFDDNRGLRIDVILATPSLAERLTESDVDYD 250
Query: 102 DTRRSKLSTHCPLT 115
K S H P+
Sbjct: 251 LRGIDKPSDHAPIW 264
>gi|188991692|ref|YP_001903702.1| Exodeoxyribonuclease III [Xanthomonas campestris pv. campestris
str. B100]
gi|167733452|emb|CAP51653.1| Exodeoxyribonuclease III [Xanthomonas campestris pv. campestris]
Length = 367
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 29/131 (22%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ L + A + P + GDFN D + ++ G
Sbjct: 142 QRLLRHAATLVALPHPVALIGDFNVVPTDAHIYDPKGWRKDALLQPESRAAYAQLLAQGW 201
Query: 52 LI---RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + D+ + + K
Sbjct: 202 TDSLQAIHGDAPVYTFWDYFRQHFARDRGLRIDHLLLNRTLAAGLRDAGVDKWVRALEKA 261
Query: 109 STHCPLTIEYD 119
S H P I D
Sbjct: 262 SDHAPTWITVD 272
>gi|171321052|ref|ZP_02910036.1| exodeoxyribonuclease III Xth [Burkholderia ambifaria MEX-5]
gi|171093687|gb|EDT38835.1| exodeoxyribonuclease III Xth [Burkholderia ambifaria MEX-5]
Length = 257
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 44/145 (30%), Gaps = 31/145 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++K+ ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELKSKREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + + E R ++ + + +
Sbjct: 177 WLTQLFDDVGYVDVFRTLDPRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAGTAKR 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFEK 122
S + K S H PLT++YD++K
Sbjct: 235 TSIF--KDIKFSDHAPLTVDYDYKK 257
>gi|108798182|ref|YP_638379.1| exodeoxyribonuclease III (xth) [Mycobacterium sp. MCS]
gi|119867278|ref|YP_937230.1| exodeoxyribonuclease III Xth [Mycobacterium sp. KMS]
gi|108768601|gb|ABG07323.1| exodeoxyribonuclease III (xth) [Mycobacterium sp. MCS]
gi|119693367|gb|ABL90440.1| exodeoxyribonuclease III Xth [Mycobacterium sp. KMS]
Length = 263
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 33/136 (24%), Gaps = 21/136 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------WQKMDP-- 48
+ L + T V+ GD+N + Q +
Sbjct: 130 ERFMAALAMRMAEIRGTDA--VVCGDWNIAHTENDIKNWKGNVKKSGFLPSERQWLTDLL 187
Query: 49 ----DGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
++ + R ++ + D + + D
Sbjct: 188 GTGWVDVVRALHPDVAGPYSWWSWRGRAFDNDAGWRIDYQLASPSLAPRAHIARVERADA 247
Query: 104 RRSKLSTHCPLTIEYD 119
+ S H P+T+EY
Sbjct: 248 YALRWSDHAPVTVEYS 263
>gi|228930104|ref|ZP_04093114.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228829603|gb|EEM75230.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 337
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK + ++ + G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 211 IRKQQVEYLKAYMNKHYEKGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 270
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 271 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 327
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 328 NPVSAVFKLK 337
>gi|229086305|ref|ZP_04218483.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
gi|228697000|gb|EEL49807.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
Length = 252
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 27/124 (21%), Gaps = 23/124 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ P + GD N I + + +P
Sbjct: 133 KLDKKKPVIFCGDLNVAHKEIDLKNPKTNRKNPGFSDQERKRFTQILDEGFIDTYRYLYP 192
Query: 58 EK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ + R + F++ S HCP+ +
Sbjct: 193 DREGAYSWWSYRMNARAKNIGW--RLDYFIVSERLKDKI--VDAKINSEVMGSDHCPVEL 248
Query: 117 EYDF 120
+
Sbjct: 249 NMEL 252
>gi|210617713|ref|ZP_03291707.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
gi|210149155|gb|EEA80164.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
Length = 250
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 32/134 (23%), Gaps = 25/134 (18%)
Query: 6 GEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+W + ++ P + AGD N I + + +
Sbjct: 120 IQWETDFLAYLKGLEQKKPVIFAGDLNVAYAEIDLKNPKTNRKNAGFTDEERAKFGEVLK 179
Query: 50 ----GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
F E + R + F + S D L
Sbjct: 180 AGFIDTFRYFYPEMEGIYSWWSYRFSARAKNAGW--RIDYFCVSESLKDRLADAKILT-- 235
Query: 105 RSKLSTHCPLTIEY 118
S HCP+ ++
Sbjct: 236 DVMGSDHCPIELDL 249
>gi|189485031|ref|YP_001955972.1| exodeoxyribonuclease III [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170286990|dbj|BAG13511.1| exodeoxyribonuclease III [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 251
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 24/129 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
++L K+ Q +I GD+N SI +
Sbjct: 127 DYLIKYLKQF--KDKTVIICGDYNTAHFSIDLARPKENEKVSGFMPEEREKLDNLVSSGF 184
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F +E + + + D+ + + S D +
Sbjct: 185 IDTFRYFNKEPGNYTWWDYKTAARSRNIGWRIDHFFMSQHSVKRLKSADIKKSVSG---- 240
Query: 109 STHCPLTIE 117
S HCP++I
Sbjct: 241 SDHCPVSIT 249
>gi|30265117|ref|NP_847494.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Ames]
gi|47778386|ref|YP_021976.2| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. 'Ames Ancestor']
gi|49187928|ref|YP_031181.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Sterne]
gi|167636557|ref|ZP_02394852.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0442]
gi|167641786|ref|ZP_02400028.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0193]
gi|170689357|ref|ZP_02880550.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0465]
gi|170709101|ref|ZP_02899529.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0389]
gi|177655394|ref|ZP_02936892.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0174]
gi|229601351|ref|YP_002869310.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0248]
gi|254686481|ref|ZP_05150340.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. CNEVA-9066]
gi|254735688|ref|ZP_05193395.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Western North America USA6153]
gi|254744226|ref|ZP_05201906.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Kruger B]
gi|254750980|ref|ZP_05203019.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Vollum]
gi|254756978|ref|ZP_05209006.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Australia 94]
gi|30259794|gb|AAP28980.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Ames]
gi|47552091|gb|AAT34451.2| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. 'Ames Ancestor']
gi|49181855|gb|AAT57231.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. Sterne]
gi|167510269|gb|EDR85673.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0193]
gi|167528030|gb|EDR90833.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0442]
gi|170126003|gb|EDS94902.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0389]
gi|170666653|gb|EDT17423.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0465]
gi|172080145|gb|EDT65239.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0174]
gi|229265759|gb|ACQ47396.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0248]
Length = 352
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 226 IRKQQVEFLKEYMNKHYKNGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|239941948|ref|ZP_04693885.1| putative exodeoxyribonuclease [Streptomyces roseosporus NRRL 15998]
gi|239988412|ref|ZP_04709076.1| putative exodeoxyribonuclease [Streptomyces roseosporus NRRL 11379]
gi|291445398|ref|ZP_06584788.1| exodeoxyribonuclease [Streptomyces roseosporus NRRL 15998]
gi|291348345|gb|EFE75249.1| exodeoxyribonuclease [Streptomyces roseosporus NRRL 15998]
Length = 271
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 34/131 (25%), Gaps = 20/131 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L+ + G V+ GD+N + +
Sbjct: 140 LQGLKARAAADGREVVVCGDWNIAHQEADLKNWKANRKSSGFLPEERAWLTRVLDEAAYV 199
Query: 50 GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + + R ++ + D + + V T +
Sbjct: 200 DVVRALHPDVEGPYSWWSYRGRAFDNDTGWRIDYQMATPGLAGRAVKAWVERAATHAERW 259
Query: 109 STHCPLTIEYD 119
S H P+T+ Y+
Sbjct: 260 SDHAPVTVVYE 270
>gi|212550466|ref|YP_002308783.1| exodeoxyribonuclease III [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548704|dbj|BAG83372.1| exodeoxyribonuclease III [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 253
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 22/125 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGD------------------TDDFWQKMDPDGLLI 53
+ + ++ GD+N D++ +
Sbjct: 133 YLLNLQRERPYLLVCGDYNICRQDRDINYPERHMGVSGFLPEERAWFDYFIRCGFVDSFR 192
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
F Q+K R+ + D + + S + ++S HCP
Sbjct: 193 EFNQDKNQYSWWSYRSNARAKNLGWRIDYHIITRNLQSQLKSAS----LLQEIEISDHCP 248
Query: 114 LTIEY 118
+ +E+
Sbjct: 249 IVVEF 253
>gi|223278420|ref|NP_001138591.1| DNA-(apurinic or apyrimidinic site) lyase [Canis lupus familiaris]
Length = 318
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ +S ++
Sbjct: 249 LADSFRHLYPNT-AYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|71892211|ref|YP_277944.1| exonuclease III [Candidatus Blochmannia pennsylvanicus str. BPEN]
gi|71796317|gb|AAZ41068.1| exonuclease III [Candidatus Blochmannia pennsylvanicus str. BPEN]
Length = 268
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 32/135 (23%), Gaps = 25/135 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------------DDFWQ 44
+ + + + +I GD N +
Sbjct: 133 QNYVEHTYHSHSLLLIMGDMNISPTDFDIGIGEKNKKRWIASGRCSFLPEERTWINRLMS 192
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
D PQ E R+ + D + + D S R
Sbjct: 193 WGLVDIYRNMHPQNDERYSWFSYRSHGFYKNNGLRIDLILATRPLANRCKNSDISYDIRR 252
Query: 105 RSKLSTHCPLTIEYD 119
+ S H P+ +++D
Sbjct: 253 MQRPSDHAPVWVDFD 267
>gi|325182155|emb|CCA16608.1| exodeoxyribonuclease putative [Albugo laibachii Nc14]
Length = 375
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 26/124 (20%), Gaps = 23/124 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DGLLIRFP 56
+ ++ + GD N I D + F
Sbjct: 256 EKESEKGVIWCGDLNVAHQDIDIHDPKNNRNKSPGFTDAERNNFGETLKTGFVDTFRHFH 315
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
EK+ R + F++ ++ K S H P+
Sbjct: 316 PEKQQFTYWSYRFNARTRNKGW--RLDYFVVSERLMAQ--VKASFVREGVKGSDHVPVGA 371
Query: 117 EYDF 120
Sbjct: 372 ILSL 375
>gi|170665740|gb|ACB29409.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 538
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 33/144 (22%), Gaps = 29/144 (20%)
Query: 2 LSQQGEWLKKWAD------QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + +++W ++++ P V+ GD N I + K
Sbjct: 399 LKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTEEER 458
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ R+ FL+ S +
Sbjct: 459 QSFGANFLDKGFVDTFRKQHPGVVGYTYWGYRHGGRKTNKGW--RLDYFLVSQSIAAN-- 514
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ +
Sbjct: 515 VHDSYILPDINGSDHCPIGLILKL 538
>gi|472869|emb|CAA54234.1| ARP protein [Arabidopsis thaliana]
Length = 527
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 33/144 (22%), Gaps = 29/144 (20%)
Query: 2 LSQQGEWLKKWAD------QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + +++W ++++ P V+ GD N I + K
Sbjct: 388 LKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEER 447
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ R+ FL+ S +
Sbjct: 448 QSFGANLLDKGFVDTFRKQHPGVVGYTYWGYRHGGRKTNKGW--RLDYFLVSQSIAAN-- 503
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ +
Sbjct: 504 VHDSYILPDINGSDHCPIGLILKL 527
>gi|15227354|ref|NP_181677.1| ARP; DNA-(apurinic or apyrimidinic site) lyase [Arabidopsis
thaliana]
gi|8488963|sp|P45951|ARP_ARATH RecName: Full=Apurinic endonuclease-redox protein; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|3241944|gb|AAC23731.1| DNA-(apurinic or apyrimidinic site) lyase (ARP) [Arabidopsis
thaliana]
gi|330254890|gb|AEC09984.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 536
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 33/144 (22%), Gaps = 29/144 (20%)
Query: 2 LSQQGEWLKKWAD------QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + +++W ++++ P V+ GD N I + K
Sbjct: 397 LKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEER 456
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ R+ FL+ S +
Sbjct: 457 QSFGANLLDKGFVDTFRKQHPGVVGYTYWGYRHGGRKTNKGW--RLDYFLVSQSIAAN-- 512
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
S HCP+ +
Sbjct: 513 VHDSYILPDINGSDHCPIGLILKL 536
>gi|87122253|ref|ZP_01078135.1| exodeoxyribonuclease III [Marinomonas sp. MED121]
gi|86162396|gb|EAQ63679.1| exodeoxyribonuclease III [Marinomonas sp. MED121]
Length = 274
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 13/139 (9%), Positives = 30/139 (21%), Gaps = 28/139 (20%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L + + ++ GD N + +
Sbjct: 132 LMNYLANHVA-DEQVIVMGDINISPTDLDIGIGPQNAKRWLKTGKCSFQPIEREWYAKLE 190
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDL 101
+ + R+K D + N+ + D +
Sbjct: 191 DWGLTDTYRQLNPGKTDRYSWFDYRSKGFDDEPKRGLRIDVIMASNNLLPLLQDSDVNYD 250
Query: 102 DTRRSKLSTHCPLTIEYDF 120
K S H P+ +++
Sbjct: 251 IRGMEKPSDHAPIWSDFEL 269
>gi|328883057|emb|CCA56296.1| Exodeoxyribonuclease III [Streptomyces venezuelae ATCC 10712]
Length = 276
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 38/134 (28%), Gaps = 22/134 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------- 48
LK+ + G V+ GD+N + K +
Sbjct: 143 LKELRTRAAADGREVVVCGDWNIAHREADLKNWRANKKNAGFLPEEREWLGRVLDEADGA 202
Query: 49 --DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
D + P+++ R ++ + D + + V T
Sbjct: 203 YVDVVRALHPEQEGPYSWWSYRGRAFDNDTGWRIDYQIATPGLAAKAVKGYVERAATHAE 262
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+T+ Y+
Sbjct: 263 RWSDHAPVTVVYEL 276
>gi|312140778|ref|YP_004008114.1| exodeoxyribonuclease iii [Rhodococcus equi 103S]
gi|325675582|ref|ZP_08155266.1| exodeoxyribonuclease III [Rhodococcus equi ATCC 33707]
gi|311890117|emb|CBH49435.1| exodeoxyribonuclease III [Rhodococcus equi 103S]
gi|325553553|gb|EGD23231.1| exodeoxyribonuclease III [Rhodococcus equi ATCC 33707]
Length = 275
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 12/120 (10%), Positives = 26/120 (21%), Gaps = 20/120 (16%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLIRFPQE-K 59
G ++ GD+N + ++ +
Sbjct: 156 GRDVLVCGDWNIAHTERDIKNWKGNVKKSGFLPGERDWVGALLAGGAWVDVVRELHPDVD 215
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R K+ D + T + S H P+T+++
Sbjct: 216 GPYSWWSYRGKAFDTDAGWRIDYHLTTPGLAARAKEARVERAATYAERWSDHAPVTVQFR 275
>gi|152987919|ref|YP_001346307.1| exodeoxyribonuclease III [Pseudomonas aeruginosa PA7]
gi|150963077|gb|ABR85102.1| exodeoxyribonuclease III [Pseudomonas aeruginosa PA7]
Length = 261
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGL 51
E L + A + +K+G P V+AGDFN ++ D + ++++ G
Sbjct: 129 EHLIRHAAELMKSGHPVVLAGDFNVVPSNFDIYDTRSWKKDALLQPESRECFERLLRQGW 188
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ ++ + + D+ + +
Sbjct: 189 VDALRQRFPDRRLYTFWDYFRQHWQRDAGLRIDHLLLSASLADHLEDAGVDRWVRGEEHA 248
Query: 109 STHCPLTIEYD 119
S H P +
Sbjct: 249 SDHAPAWVSLR 259
>gi|295688634|ref|YP_003592327.1| endonuclease/exonuclease/phosphatase [Caulobacter segnis ATCC
21756]
gi|295430537|gb|ADG09709.1| Endonuclease/exonuclease/phosphatase [Caulobacter segnis ATCC
21756]
Length = 323
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 9/122 (7%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+WL++WA+Q+ G + GDFN + F + S+
Sbjct: 200 AKWLRQWAEQEDDFGHNLIAMGDFNIDRHGDPLWQAFTSTGLTPAPGLLKVPRTLSSSLD 259
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDN---------SFSIVSYDQSDLDTRRSKLSTHCPLTI 116
KS D + + +F V + ++S H PL +
Sbjct: 260 TPDLKSFFDQIAWFETVRGRPYLSLKYRQAGGVNFQGVVLKDLNRTELSWRISDHYPLWV 319
Query: 117 EY 118
E+
Sbjct: 320 EF 321
>gi|228942241|ref|ZP_04104781.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228975171|ref|ZP_04135730.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228981810|ref|ZP_04142105.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis Bt407]
gi|228777922|gb|EEM26194.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis Bt407]
gi|228784692|gb|EEM32712.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228817575|gb|EEM63660.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326942895|gb|AEA18791.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
thuringiensis serovar chinensis CT-43]
Length = 352
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ + G +I GD+N+ +++ +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKEYMNKHYENGDYVIIGGDWNQLVSNAQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|229105686|ref|ZP_04236317.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-28]
gi|228677734|gb|EEL31980.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-28]
Length = 352
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G ++ GD+N+ I++ +D + K PD L+ +
Sbjct: 226 IRKQQVEYLKEYMNKHYKNGDYVIMGGDWNQLISNAQLSDPKFVKERPDWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|319405904|emb|CBI79536.1| exodeoxyribonuclease III [Bartonella sp. AR 15-3]
Length = 260
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 41/133 (30%), Gaps = 17/133 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
+ L A ++ P ++AGD+N S+ + +Q + G
Sbjct: 128 MKRLYTHAKSLLEYEEPLILAGDYNVIPTSLDAKNPQEWNNDALFLPQIREIFQCITHLG 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF-SIVSYDQSDLDTRRS-KL 108
++ +++ + L+ + S + R K
Sbjct: 188 FYDAIRNVTDTPSFSFWDFQANAWKKNNGIRIDHLLLSPEAADQLICAYSQTEVRGYQKP 247
Query: 109 STHCPLTIEYDFE 121
S H P+ +E + +
Sbjct: 248 SDHIPIWVELNCD 260
>gi|317496610|ref|ZP_07954957.1| exodeoxyribonuclease III [Gemella moribillum M424]
gi|316913275|gb|EFV34774.1| exodeoxyribonuclease III [Gemella moribillum M424]
Length = 254
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 29/123 (23%), Gaps = 23/123 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
++ V+ GD N I + + F
Sbjct: 132 ELNKTKGVVVCGDLNVAHTEIDLKNPKSNTKNAGFTPEEREKFTKLLDAGFIDTFRYFNP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
E + R + + D D +VS + S HCP+ +
Sbjct: 192 ELTGAYSWWSYRFNARKNNAGWRIDYFLTSRDLEKYLVSAKIHNDILG----SDHCPVEV 247
Query: 117 EYD 119
+
Sbjct: 248 VLN 250
>gi|317478482|ref|ZP_07937642.1| endonuclease/Exonuclease/phosphatase [Bacteroides sp. 4_1_36]
gi|316905371|gb|EFV27165.1| endonuclease/Exonuclease/phosphatase [Bacteroides sp. 4_1_36]
Length = 287
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 25/104 (24%), Gaps = 5/104 (4%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I +P +I GDFN M+
Sbjct: 186 KEIAPDMPAIITGDFNCTPGEEPLQTLEKGGMENAAKTAAVTYGP---SWSFHDFGRLP- 241
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ I Y S LS HCP+ +E
Sbjct: 242 -VEERVLLDYVFVTKGAKIDRYRVIQDKPENSYLSDHCPILVEL 284
>gi|257455364|ref|ZP_05620599.1| exodeoxyribonuclease III [Enhydrobacter aerosaccus SK60]
gi|257447326|gb|EEV22334.1| exodeoxyribonuclease III [Enhydrobacter aerosaccus SK60]
Length = 270
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/136 (11%), Positives = 28/136 (20%), Gaps = 26/136 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L + Q ++ GD N
Sbjct: 133 LTDYILQLKAENRSMILMGDMNIAPLDFDIGISEDSVKRWLKNGTCSFLPEEREWYQALL 192
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLD 102
D + ++ R+K D + L+ + S
Sbjct: 193 ATDLHDTYRALYADGQALSWFDYRSKGFDDEPKRGLRIDHILMTPDLADKLNGAGVSYDL 252
Query: 103 TRRSKLSTHCPLTIEY 118
K S H P+ ++
Sbjct: 253 RAMEKPSDHAPIWADF 268
>gi|229187318|ref|ZP_04314462.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BGSC 6E1]
gi|228596169|gb|EEK53845.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BGSC 6E1]
Length = 337
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK + ++ + G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 211 IRKQQVEYLKAYMNKHYEKGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 270
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 271 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 327
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 328 NPVSAVFKLK 337
>gi|167767320|ref|ZP_02439373.1| hypothetical protein CLOSS21_01839 [Clostridium sp. SS2/1]
gi|167711295|gb|EDS21874.1| hypothetical protein CLOSS21_01839 [Clostridium sp. SS2/1]
gi|291559374|emb|CBL38174.1| exodeoxyribonuclease III [butyrate-producing bacterium SSC/2]
Length = 250
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/134 (10%), Positives = 32/134 (23%), Gaps = 25/134 (18%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+W + + +K++ P + GD N + I + + +
Sbjct: 120 MKWEEDFLAYLKKLEEKKPVIFCGDLNVAVEEIDLKNPKTNRKNAGFTDEEREKMRTILS 179
Query: 50 ----GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ R + + D I
Sbjct: 180 NGFIDTFRYLYPDQTGIYSWWSYRFNARKNNAGWRIDYFIVSECLKDRISDAKILT---- 235
Query: 105 RSKLSTHCPLTIEY 118
S HCP+ +++
Sbjct: 236 DVMGSDHCPIELDF 249
>gi|160891380|ref|ZP_02072383.1| hypothetical protein BACUNI_03830 [Bacteroides uniformis ATCC 8492]
gi|156858787|gb|EDO52218.1| hypothetical protein BACUNI_03830 [Bacteroides uniformis ATCC 8492]
Length = 217
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 25/104 (24%), Gaps = 5/104 (4%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I +P +I GDFN M+
Sbjct: 116 KEIAPDMPAIITGDFNCTPGEEPLQTLEKGGMENAAKTAAVTYGP---SWSFHDFGRLP- 171
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ I Y S LS HCP+ +E
Sbjct: 172 -VEERVLLDYVFVTKGAKIDRYRVIQDKPENSYLSDHCPILVEL 214
>gi|297694584|ref|XP_002824554.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Pongo abelii]
gi|297694586|ref|XP_002824555.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Pongo abelii]
gi|146286035|sp|A2T7I6|APEX1_PONPY RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|124054149|gb|ABM89264.1| APEX1 [Pongo pygmaeus]
Length = 318
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +++ + + P V+ GD N I + Q +
Sbjct: 190 EAFRRFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 249 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLTALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|313202195|ref|YP_004040853.1| exodeoxyribonuclease III xth [Methylovorus sp. MP688]
gi|312441511|gb|ADQ85617.1| exodeoxyribonuclease III Xth [Methylovorus sp. MP688]
Length = 260
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 31/127 (24%), Gaps = 21/127 (16%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLL 52
+ G VI GD+N + + ++ +
Sbjct: 135 HLEALRAAGRDVVICGDWNIAHKEADLKNWKGNKKNSGFLPEERAWLTDLFDRVGWVDVY 194
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ C N+ + + F+ + S + S H
Sbjct: 195 RVLHPDTTDECYTWWSNRGQAWAKNVGWRIDYQIATPDFAAKAIAASIYKL--ERFSDHA 252
Query: 113 PLTIEYD 119
PL I+Y
Sbjct: 253 PLIIDYQ 259
>gi|296214367|ref|XP_002753758.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Callithrix jacchus]
gi|296214369|ref|XP_002753759.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Callithrix jacchus]
Length = 318
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ +S ++
Sbjct: 249 LADSFRHLYPNT-AYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|210622632|ref|ZP_03293292.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
gi|210154133|gb|EEA85139.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
Length = 250
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 32/129 (24%), Gaps = 24/129 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + + + P V+ GD N I + + +
Sbjct: 127 RAYLK-NLDSKKPVVMCGDLNVAHKEIDLKNPKTNRKNAGFTDEERNKFTEFLESGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + R + + D +VS + S
Sbjct: 186 FRYFYPDAEGMYSWWSYRFNARKNNAGWRIDYFCTSESMKDRLVSAKIHNEVLG----SD 241
Query: 111 HCPLTIEYD 119
HCP+ + +
Sbjct: 242 HCPVELVIE 250
>gi|183221215|ref|YP_001839211.1| exodeoxyribonuclease [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189911306|ref|YP_001962861.1| exodeoxyribonuclease III [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167775982|gb|ABZ94283.1| Exodeoxyribonuclease III [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167779637|gb|ABZ97935.1| Exodeoxyribonuclease [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 256
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/116 (12%), Positives = 26/116 (22%), Gaps = 23/116 (19%)
Query: 25 IAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEKES----TCNV 65
I GD N + + + G F
Sbjct: 145 ICGDVNIAHTEMDIHNPKGNQNNSGFLPAERKWFTDFLELGFFDCFRTIHPDVLDEYSWW 204
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
R ++ + D S + + + +S H P+ +E F
Sbjct: 205 TYRFQARKNNKGWRIDYFFVTKSKSVRLQTAKIAKEPV----MSDHAPVVLEIQFS 256
>gi|108762443|ref|YP_632150.1| exodeoxyribonuclease III [Myxococcus xanthus DK 1622]
gi|108466323|gb|ABF91508.1| exodeoxyribonuclease III [Myxococcus xanthus DK 1622]
Length = 260
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 22/131 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
L + ++ ++ G ++ GDFN I W +
Sbjct: 130 RRLFERLEKPLRDGGRVLVMGDFNTAHQEIDLARPKENRETSGFRPEEREEFDRWIRAGW 189
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F + + +R + + I L +
Sbjct: 190 VDTFRHFNKGGGNYSWWSQR--AGVREKNIGWRIDYVLASPAAMAYVRKAGIHP--DVLG 245
Query: 109 STHCPLTIEYD 119
S HCP++++ D
Sbjct: 246 SDHCPVSVDLD 256
>gi|126433840|ref|YP_001069531.1| exodeoxyribonuclease III Xth [Mycobacterium sp. JLS]
gi|126233640|gb|ABN97040.1| exodeoxyribonuclease III Xth [Mycobacterium sp. JLS]
Length = 263
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 33/136 (24%), Gaps = 21/136 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------WQKMDP-- 48
+ L + T V+ GD+N + Q +
Sbjct: 130 ERFMAALATRMAEIRGTDA--VVCGDWNIAHTENDIKNWKGNVKKSGFLPSERQWLTDLL 187
Query: 49 ----DGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
++ + R ++ + D + + D
Sbjct: 188 GTGWVDVVRALHPDVAGPYSWWSWRGRAFDNDAGWRIDYQLASPSLAPRAHIARVERADA 247
Query: 104 RRSKLSTHCPLTIEYD 119
+ S H P+T+EY
Sbjct: 248 YALRWSDHAPVTVEYS 263
>gi|119774614|ref|YP_927354.1| endonuclease/exonuclease/phosphatase [Shewanella amazonensis SB2B]
gi|119767114|gb|ABL99684.1| endonuclease/exonuclease/phosphatase [Shewanella amazonensis SB2B]
Length = 947
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 44/140 (31%), Gaps = 25/140 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ--EKES 61
+ + + ++ + + P ++ GD N ++ GL F ++ +
Sbjct: 654 RAAKAVGEFLNTEFA-DAPVLVIGDLNSYAMENP-----LTALNEAGLTELFAHLGKESA 707
Query: 62 TCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDTR 104
V LD+ + + + + I+ Y+ S
Sbjct: 708 YSYVFSGESGQLDHALANVALLEKVVDVTEWHINTDEPRILDYNVEFKSAGQVESLYSMD 767
Query: 105 RSKLSTHCPLTIEYDFEKGN 124
+ S H P+ I + E+ N
Sbjct: 768 AYRSSDHDPVVISLELERAN 787
>gi|167585100|ref|ZP_02377488.1| exodeoxyribonuclease III Xth [Burkholderia ubonensis Bu]
Length = 257
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 43/145 (29%), Gaps = 31/145 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++K ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELKKKREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + + E R ++ + + +
Sbjct: 177 WLTQLFDDVGYVDVFRALDPRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAGTAKR 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFEK 122
S + K S H PLT++YD++K
Sbjct: 235 TSIF--KDIKFSDHAPLTVDYDYKK 257
>gi|254486542|ref|ZP_05099747.1| endonuclease/exonuclease/phosphatase family protein [Roseobacter
sp. GAI101]
gi|214043411|gb|EEB84049.1| endonuclease/exonuclease/phosphatase family protein [Roseobacter
sp. GAI101]
Length = 341
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 26/141 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ-------------KMDPDGL 51
Q WL+ D+ ++ G P ++ GD N D F + +
Sbjct: 200 QAIWLRGRIDEHLERGSPLMVMGDLNDGPGLDAFEDFFGRSSVEIVLGHRGAFALTDPHA 259
Query: 52 LIRFPQEKESTCNVIKRNKSSLD-------------YFVIDRDNKNFLIDNSFSIVSYDQ 98
Q + + + D + + + +
Sbjct: 260 TRALGQRIGAMPTTSRFWIAPEKRYLQALLDYIMVSPQFTDNNARWRIWHPLDDPECWAD 319
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
+DL S H P+TIE+D
Sbjct: 320 ADLRDALVTASDHFPVTIEFD 340
>gi|91975059|ref|YP_567718.1| exodeoxyribonuclease III (xth) [Rhodopseudomonas palustris BisB5]
gi|91681515|gb|ABE37817.1| exodeoxyribonuclease III (xth) [Rhodopseudomonas palustris BisB5]
Length = 274
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT----------------DDFWQKMDPD 49
+ L + A + + +G P VIAGDFN ++ + + +
Sbjct: 138 MKRLNRHAGKLLASGAPVVIAGDFNVAPTALDIYPTKSWNEDALIQPESRRAYAKLLGQG 197
Query: 50 GLL--IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
++ + D+ + + + + R
Sbjct: 198 WTDAVRALHPDQRVYTFWTYWRNRFERDDGLRLDHLLVSPELASRLFAAGVDRAVRAREG 257
Query: 108 LSTHCPLTIEY 118
S H P I
Sbjct: 258 ASDHAPAWIVL 268
>gi|254479049|ref|ZP_05092404.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
gi|214035005|gb|EEB75724.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
Length = 258
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 31/120 (25%), Gaps = 23/120 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ + P ++ GD N I + + + F
Sbjct: 135 KLDSLKPVILCGDLNVAHQEIDIKNPAANRRNAGFTDEEREKMTILLNSGFIDTFRYFYP 194
Query: 58 EKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+K+ + + + F++ + Y S HCP+ +
Sbjct: 195 DKKDAYTWWSYMHNAREKNIGW--RVDYFIVSE--RLKDYLIDSQIHSEVMGSDHCPVVL 250
>gi|289771097|ref|ZP_06530475.1| exodeoxyribonuclease III [Streptomyces lividans TK24]
gi|289701296|gb|EFD68725.1| exodeoxyribonuclease III [Streptomyces lividans TK24]
Length = 274
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 22/133 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
LK+ ++ G V+ GD+N + K +
Sbjct: 141 LKELRERAAAEGREVVVCGDWNIAHREADLKNWRANKKNSGFLPEEREWLGRVLDPAEGG 200
Query: 50 --GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
++ + + R ++ + D + V T
Sbjct: 201 YVDVVRALHPDVEGPYSWWSYRGRAFDNDAGWRIDYHVSTPGLAAKAVKGYVERAATHAE 260
Query: 107 KLSTHCPLTIEYD 119
+ S H P+T+ YD
Sbjct: 261 RWSDHAPVTVVYD 273
>gi|288817830|ref|YP_003432177.1| exodeoxyribonuclease III [Hydrogenobacter thermophilus TK-6]
gi|288787229|dbj|BAI68976.1| exodeoxyribonuclease III [Hydrogenobacter thermophilus TK-6]
gi|308751428|gb|ADO44911.1| exodeoxyribonuclease III Xth [Hydrogenobacter thermophilus TK-6]
Length = 268
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 25/130 (19%), Gaps = 20/130 (15%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------QKMDPDGLL 52
++ + V+ GD N + I D
Sbjct: 139 RFITESFSPNDKIVLVGDMNVAMEDIDVYDPVLLKDTIGTMKEERDALKKLISWGFVDAF 198
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLST 110
EK + D + +R K S
Sbjct: 199 RYLYPEKRQFTWWDYIGGMVWKDQGMRIDYILITKPLLAYLRDVYVDMWPRKRRNPKPSD 258
Query: 111 HCPLTIEYDF 120
H P+ ++
Sbjct: 259 HAPIVGVFEL 268
>gi|225376286|ref|ZP_03753507.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
gi|225211932|gb|EEG94286.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
Length = 255
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 32/132 (24%), Gaps = 25/132 (18%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+W + + +++ P ++ GD N I + + +
Sbjct: 124 MQWEEDFLAFLKRLDEVKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKMTTLLN 183
Query: 50 ----GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
F + + R K+ D + S
Sbjct: 184 SGFTDTFRYFYPDKEGIYSWWSYRFKAREKNAGWRIDYFITSRCLDEKLQSAGIHTE--- 240
Query: 105 RSKLSTHCPLTI 116
S HCP+ +
Sbjct: 241 -VYGSDHCPVEL 251
>gi|182678385|ref|YP_001832531.1| exodeoxyribonuclease III [Beijerinckia indica subsp. indica ATCC
9039]
gi|182634268|gb|ACB95042.1| exodeoxyribonuclease III [Beijerinckia indica subsp. indica ATCC
9039]
Length = 258
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 28/131 (21%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
+ L A ++ V+AGD+N D +
Sbjct: 127 MDRLIAHASTLLQCEELLVLAGDYNVIPMPGDCYDPAVWATDALFLPPTRARFRSLLNLG 186
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
L E + + I D+ + K
Sbjct: 187 FTNALRAVSDEPGLYTFWDYQAGAWQRNKGICIDHLLLSPQAVDHLQHVVIDKERRGEDK 246
Query: 108 LSTHCPLTIEY 118
S H P+ +
Sbjct: 247 PSDHVPVRVTL 257
>gi|24374562|ref|NP_718605.1| exonuclease III [Shewanella oneidensis MR-1]
gi|24349161|gb|AAN56049.1|AE015740_3 exodeoxyribonuclease III [Shewanella oneidensis MR-1]
Length = 270
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 28/137 (20%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L I GD N +
Sbjct: 131 QDLMAHLHANHSNDEDIAIIGDINISPIDLDIGIGEVNRKRWLKTGKCSFQPEEREWLKT 190
Query: 43 WQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q + ++ E R+K D + D + +V D
Sbjct: 191 LQDWGLVDTFRQLHPDRSERYSWFDYRSKGFDDNRGLRIDVILATPSLAARLVESDVDYE 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 251 LRGIDKPSDHAPIWSTF 267
>gi|331006597|ref|ZP_08329884.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC1989]
gi|330419581|gb|EGG93960.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC1989]
Length = 272
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 14/140 (10%), Positives = 24/140 (17%), Gaps = 27/140 (19%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
E L + + ++ GD N
Sbjct: 132 EDLDSYLCRNHTPEDQLIVMGDMNISPEDQDIGIGEDNRKRWLKTGKCSFLPIEREWLAK 191
Query: 43 WQKMDPDGLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQS 99
+ R++ L S +
Sbjct: 192 LYNWGLTDTYRLLHPTGSDYFSWFDYRSRGFEREPKRGLRIDLILATESLAKTVTESGID 251
Query: 100 DLDTRRSKLSTHCPLTIEYD 119
K S HCP+ +D
Sbjct: 252 YEIRGMEKPSDHCPIWTYFD 271
>gi|283778620|ref|YP_003369375.1| endonuclease/exonuclease/phosphatase [Pirellula staleyi DSM 6068]
gi|283437073|gb|ADB15515.1| Endonuclease/exonuclease/phosphatase [Pirellula staleyi DSM 6068]
Length = 309
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 18/136 (13%)
Query: 3 SQQGEWLKKWADQKIKTGI---PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q W+KK +Q+ T PF++ GD N ++S D D + + + +
Sbjct: 174 KLQSTWVKKLVNQRFGTDPGNNPFIVLGDLNDYLDSASDPDSGIRNLVKWNQVENVIERL 233
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--------------- 104
+ +Y +D + + ++ V + L TR
Sbjct: 234 PAAERWTHYWNGGNEYRQLDYLLVSKSLSSAVQSVEIIRGGLPTRATNYTGPRFPGVGTN 293
Query: 105 RSKLSTHCPLTIEYDF 120
K S HCP+ +E
Sbjct: 294 DPKASDHCPIVVELKL 309
>gi|188588613|ref|YP_001921245.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|188498894|gb|ACD52030.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
Length = 251
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 13/126 (10%), Positives = 32/126 (25%), Gaps = 24/126 (19%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ + ++ GD N I + + +
Sbjct: 128 RDYLNE-LNKDKSVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKFDELLKSGFIDT 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + + R + + D D +V + S
Sbjct: 187 YRYFYPDKEGAYSWWSYRFNARANNAGWRIDYFLVSKDFEDRLVDANIHTQIEG----SD 242
Query: 111 HCPLTI 116
HCP+ +
Sbjct: 243 HCPVEL 248
>gi|169837263|ref|ZP_02870451.1| exonuclease III [candidate division TM7 single-cell isolate TM7a]
Length = 267
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 34/138 (24%), Gaps = 25/138 (18%)
Query: 2 LSQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD------------------ 41
L Q +W K W + +K+++ P + GD N +
Sbjct: 134 LRHQ-KWDKAWLEYMKKLESIKPVLFCGDLNVAHTEDDLANPKPNIGKHGFTNEERAGFD 192
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + F + + D + I
Sbjct: 193 AFIQSGFKDTFRIFTKGNGYYSWWTHWANARARNIGWRIDYWLASEKLANKITEAQIHPD 252
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+++ D
Sbjct: 253 IMG----SDHCPVSVTID 266
>gi|74316272|ref|YP_314012.1| DNA-(apurinic or apyrimidinic site) lyase [Thiobacillus
denitrificans ATCC 25259]
gi|74055767|gb|AAZ96207.1| DNA-(apurinic or apyrimidinic site) lyase [Thiobacillus
denitrificans ATCC 25259]
Length = 259
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/141 (12%), Positives = 37/141 (26%), Gaps = 26/141 (18%)
Query: 3 SQQG-----EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------- 41
QQ + ++ +K G +I GD+N I +
Sbjct: 118 RQQAKFRFLDAFFPHLEKLVKCGREIIICGDWNIAHQEIDLKNWKSNQKNSGFLPEERAW 177
Query: 42 ---FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ ++ + N+ + + + +
Sbjct: 178 MTRLFDELGWVDVYRSLYPAHTGEAYTWWSNRGQAWAKNVGWRIDYQIATPGIAAKAR-- 235
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
S + + S H PL ++YD
Sbjct: 236 SAFVYKEQRFSDHAPLVVDYD 256
>gi|52140457|ref|YP_086372.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus E33L]
gi|51973926|gb|AAU15476.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus E33L]
Length = 352
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK + ++ + G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKAYMNKHYEKGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|113969789|ref|YP_733582.1| exonuclease III [Shewanella sp. MR-4]
gi|113884473|gb|ABI38525.1| Exodeoxyribonuclease III [Shewanella sp. MR-4]
Length = 270
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 28/137 (20%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L I GD N +
Sbjct: 131 QDLMAHLHANHSNDEDIAIIGDINISPIDLDIGIGEVNRKRWLKTGKCSFQPEEREWLKT 190
Query: 43 WQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q + ++ E R+K D + D + +V D
Sbjct: 191 LQDWGLVDTFRQLHPDRSERYSWFDYRSKGFDDNRGLRIDVILATPSLAARLVESDVDYD 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 251 LRGIDKPSDHAPIWSTF 267
>gi|254292391|ref|YP_003058414.1| exodeoxyribonuclease III Xth [Hirschia baltica ATCC 49814]
gi|254040922|gb|ACT57717.1| exodeoxyribonuclease III Xth [Hirschia baltica ATCC 49814]
Length = 269
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 34/128 (26%), Gaps = 25/128 (19%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDT-------------------DDFWQKMDPDGLLIRF 55
+ P ++ GD N D ++ +
Sbjct: 139 ARSNDSQPLIVVGDINVAPREHDVWSHKQLLKVVSHTPIETQAVDRILKEGGFADIARVK 198
Query: 56 PQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV----SYDQSDLDTRRSKLST 110
++ ++ R K R + + + + + SY+ D K S
Sbjct: 199 HEDKEKLYSWWSYRAKDWEK-SNRGRRLDHIWANRAATPLTDPASYEIHKDDRGGEKPSD 257
Query: 111 HCPLTIEY 118
H P+TI
Sbjct: 258 HAPVTINL 265
>gi|254000228|ref|YP_003052291.1| exodeoxyribonuclease III Xth [Methylovorus sp. SIP3-4]
gi|253986907|gb|ACT51764.1| exodeoxyribonuclease III Xth [Methylovorus sp. SIP3-4]
Length = 260
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 31/127 (24%), Gaps = 21/127 (16%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLL 52
+ G VI GD+N + + ++ +
Sbjct: 135 HLEALRAAGRDVVICGDWNIAHKEADLKNWKGNKKNSGFLPEERAWLTDLFDRVGWVDVY 194
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ C N+ + + F+ + S + S H
Sbjct: 195 RVLHPDTTDECYTWWSNRGQAWAKNVGWRIDYQIATPYFAAKAVAASIYKL--ERFSDHA 252
Query: 113 PLTIEYD 119
PL I+Y
Sbjct: 253 PLIIDYQ 259
>gi|99079894|ref|YP_612048.1| exodeoxyribonuclease III [Ruegeria sp. TM1040]
gi|99036174|gb|ABF62786.1| exodeoxyribonuclease III [Ruegeria sp. TM1040]
Length = 262
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 28/133 (21%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W + V+ GD N D
Sbjct: 133 MRDWF--HAERPEKSVLVGDLNIAPREDDVWDHKKLLKVVSHTPIEVEHLDQVMDAGGWA 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ + E + R K D R + + S K
Sbjct: 191 DVTRKDIPEGQLYSWWSYRAKDW-DAADKGRRLDHVWTTADITNAAHSSRILRHARGWEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFATFDL 262
>gi|178743|gb|AAA58371.1| apurinic endonuclease [Homo sapiens]
Length = 318
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 249 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 ASDHCPITLYLAL 318
>gi|323340218|ref|ZP_08080482.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|323092409|gb|EFZ35017.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
Length = 254
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 28/120 (23%), Gaps = 23/120 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ- 57
+K P ++ GD N I + + F
Sbjct: 133 LKEKKPVIMCGDLNVAHEEIDLKNPKTNHRNAGFSNEERSCMTRLLENGYLDTFRFFHPD 192
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E R + + D S+ + + S HCP+ +E
Sbjct: 193 ETGIYSWWSYRFNARKNNAGWRIDYFIVSESLKDSLENAEILTDIMG----SDHCPVLLE 248
>gi|113866254|ref|YP_724743.1| exodeoxyribonuclease III [Ralstonia eutropha H16]
gi|113525030|emb|CAJ91375.1| Exodeoxyribonuclease III [Ralstonia eutropha H16]
Length = 258
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 35/137 (25%), Gaps = 23/137 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+ E Q +G V+ GD N I + +
Sbjct: 125 RFMEAFLPHLLQLKASGREIVLCGDVNIAHKEIDIKNWKGNLKNSGFLPEERAWIGELFD 184
Query: 50 -----GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + E R ++ L + + S +
Sbjct: 185 VHGYVDVFRKLDPRPEQYTWWSNRGQAYAKNVGW--RIDYHLATPKIADTARLCSIY--K 240
Query: 105 RSKLSTHCPLTIEYDFE 121
K S H PL+I+YD+
Sbjct: 241 DEKFSDHAPLSIDYDYP 257
>gi|253997612|ref|YP_003049676.1| exodeoxyribonuclease III Xth [Methylotenera mobilis JLW8]
gi|253984291|gb|ACT49149.1| exodeoxyribonuclease III Xth [Methylotenera mobilis JLW8]
Length = 256
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 21/125 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLI 53
+++G VI GD+N + + M +
Sbjct: 133 LHALVQSGRDVVICGDWNIAHKEADLKNWKGNRKNSGFLPEERAWLTQLFDDMGWVDVYR 192
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ C N+ + + +F+ S + + S H P
Sbjct: 193 TLYPDTTDACYTWWSNRGQAWANNVGWRIDYQIATPAFAAK--AVSTSVYKDERFSDHAP 250
Query: 114 LTIEY 118
L I+Y
Sbjct: 251 LIIDY 255
>gi|87306888|ref|ZP_01089034.1| hypothetical protein DSM3645_00505 [Blastopirellula marina DSM
3645]
gi|87290261|gb|EAQ82149.1| hypothetical protein DSM3645_00505 [Blastopirellula marina DSM
3645]
Length = 253
Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 26/118 (22%), Gaps = 11/118 (9%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + L ++G P V+ GDFN S D
Sbjct: 143 EAAKLLVDQMKATTESG-PVVLTGDFNADAGSSPHQALATYLRDSWKSAKWEGSAWTFNG 201
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR-RSKLSTHCPLTIEYDF 120
K + F + S HCP+T F
Sbjct: 202 WSDKSKGA---------RIDWIFHSQGFQATDSTIDRWKSDQGRYPSDHCPVTTTLTF 250
>gi|270295490|ref|ZP_06201691.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270274737|gb|EFA20598.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 254
Score = 61.4 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 26/104 (25%), Gaps = 5/104 (4%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I G+P +I GDFN M+
Sbjct: 153 KEIAPGMPAIITGDFNCTPGEEPLQTLEKGGMENAAKTAAVTYGP---SWSFHDFGRLP- 208
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ I Y S LS HCP+ +E
Sbjct: 209 -VEERVLLDYVFVTKGAKIDRYRVIQDKPENSYLSDHCPILVEL 251
>gi|319404431|emb|CBI78034.1| exodeoxyribonuclease III [Bartonella rochalimae ATCC BAA-1498]
Length = 260
Score = 61.4 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 36/131 (27%), Gaps = 17/131 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
+ L A + P ++AGD+N + + +Q + G
Sbjct: 128 MKRLYTHAKSLLAYEEPLILAGDYNVIPTPLDAKNPQEWSNDALFLPQIRQIFQCITHLG 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKL 108
++ +++ + L+ ++ K
Sbjct: 188 FYDAIRNVTDAPSFSFWDFQANAWKKNNGIRIDHLLLSPEAADQLICAYSQTEARGYQKP 247
Query: 109 STHCPLTIEYD 119
S H P+ IE +
Sbjct: 248 SDHVPIWIELN 258
>gi|91793624|ref|YP_563275.1| endonuclease/exonuclease/phosphatase [Shewanella denitrificans
OS217]
gi|91715626|gb|ABE55552.1| Endonuclease/exonuclease/phosphatase [Shewanella denitrificans
OS217]
Length = 942
Score = 61.4 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 35/139 (25%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + +W + ++ GD N T +
Sbjct: 648 RAATAVAQWLNTVYPEQQ-VLVIGDLNAYAKEDPITALEQGGFSELFQ---HLGHSNAYS 703
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQSD---------LDTRRS 106
V LD+ + + + +I+ Y++
Sbjct: 704 YVFSGESGQLDHALASASLLDNVVAAQEWHINTDEPTILDYNEEYKSAAQIANLYQGDAY 763
Query: 107 KLSTHCPLTIEYDFEKGNV 125
+ S H P+ + +F NV
Sbjct: 764 RSSDHDPVIVSLNFAPANV 782
>gi|29830170|ref|NP_824804.1| exodeoxyribonuclease [Streptomyces avermitilis MA-4680]
gi|29607280|dbj|BAC71339.1| putative exodeoxyribonuclease [Streptomyces avermitilis MA-4680]
Length = 287
Score = 61.4 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 36/134 (26%), Gaps = 22/134 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
LK ++ G ++ GD+N + + +
Sbjct: 154 LKDLRERAAADGREVLVCGDWNIAHQEADLKNWRGNRKNAGFLPEEREWLGRVLSPEDGG 213
Query: 50 --GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
++ + + R ++ + D + + V T
Sbjct: 214 YVDVMRALHPDVEGPYSWWSYRGRAFDNDSGWRIDYEVATPGLAAKAVKGFVERAATHEE 273
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+T+ YD
Sbjct: 274 RWSDHAPVTVVYDL 287
>gi|332885280|gb|EGK05531.1| exodeoxyribonuclease III [Dysgonomonas mossii DSM 22836]
Length = 254
Score = 61.4 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 28/128 (21%), Gaps = 22/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGLL 52
+ + K +I GD+N I +
Sbjct: 131 HFINNLRKERPELIICGDYNICHKPIDINHPERHTKSSGFLPEERQWFDEFIDTGLIDTF 190
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ Q E R + D + + + S HC
Sbjct: 191 RVYDQSPEKYSWWSYRAGARGKNLGWRIDYHIITEEARPRLNNAAILSEI----YFSDHC 246
Query: 113 PLTIEYDF 120
P+ +E F
Sbjct: 247 PVVVEMSF 254
>gi|323494946|ref|ZP_08100037.1| exonuclease III [Vibrio brasiliensis LMG 20546]
gi|323310741|gb|EGA63914.1| exonuclease III [Vibrio brasiliensis LMG 20546]
Length = 268
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 32/142 (22%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q L + + ++ GD N
Sbjct: 126 KRQFYSDLMTYLNDHHTNDEQLIVMGDINISPIDADIGIGEPNRKRWLKTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + + G + F Q R+K D + D + +
Sbjct: 186 QWLKTLLDWGFVDTFRQIHPDVNDRFSWFDYRSKGFPDNRGLRIDVVLATPKLAEKCIES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
D K S H P+ +
Sbjct: 246 DVDYELRGIEKPSDHAPIWSTF 267
>gi|255532760|ref|YP_003093132.1| endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
gi|255345744|gb|ACU05070.1| Endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
Length = 621
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 27/113 (23%), Gaps = 11/113 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L + + +P ++ GDFN K + + + +
Sbjct: 191 ANALVAMVNAQNTDNLPVIVFGDFNAKPGTTEIN--ALKDGLDVVDALGDSTGDPTFHGW 248
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ D S S++ S H P+ Y
Sbjct: 249 TST---------GTNKIDWIMSDRSMGFTSWNVITTSYGGYWPSDHWPVIATY 292
>gi|237747055|ref|ZP_04577535.1| exodeoxyribonuclease III [Oxalobacter formigenes HOxBLS]
gi|229378406|gb|EEO28497.1| exodeoxyribonuclease III [Oxalobacter formigenes HOxBLS]
Length = 260
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 36/129 (27%), Gaps = 21/129 (16%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDPDGLL 52
+ ++ ++ F+I GD+N I + ++ +
Sbjct: 133 FLEKLKESEREFIICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWLSRILDELGLIDVY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ N+ + + + + S + ++ S H
Sbjct: 193 RCLHPDTTDASYTWWSNRGQAWQKNVGWRIDYQIATPGIAGKAVSASIY--KETRFSDHA 250
Query: 113 PLTIEYDFE 121
PLTI YD
Sbjct: 251 PLTIWYDIP 259
>gi|218961468|ref|YP_001741243.1| Exonuclease III [Candidatus Cloacamonas acidaminovorans]
gi|167730125|emb|CAO81037.1| Exonuclease III [Candidatus Cloacamonas acidaminovorans]
Length = 256
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 22/125 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIR 54
++K +G ++ GDFN + I + +
Sbjct: 135 MEEKRTSGKIILVGGDFNTAHHPIDLANPKENEKTSGFLPIERAWLDKIAEMGWIDTFRY 194
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
F + E R K+ D + I + + S HCP+
Sbjct: 195 FDKSPEQYTWWSYRTKARPRNVGWRLDYFWVNKEGIEHIKKAGI----RQDIEGSDHCPV 250
Query: 115 TIEYD 119
+E +
Sbjct: 251 FVELE 255
>gi|291486726|dbj|BAI87801.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
Length = 252
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 30/132 (22%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E L + + + P ++ GD N I + + +
Sbjct: 125 EALLSYILE-LDQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQEREAFTRFLEAGF 183
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + R + D I S
Sbjct: 184 VDSFRHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKEQIEDASIS----ADVM 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ + +
Sbjct: 240 GSDHCPVELIIN 251
>gi|49082810|gb|AAT50805.1| PA4172 [synthetic construct]
Length = 267
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 39/131 (29%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGL 51
E L + A + +++G P V+AGDFN ++ D + ++++ G
Sbjct: 129 EHLIRHAAELMESGHPVVLAGDFNVVLSDFDIYDTRSWKKDALLQPESRECFERLLRQGW 188
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ ++ + + D+ + +
Sbjct: 189 VDALRQRFPDRRLYTFWDYFRQHWQRDAGLRIDHLLLSASLADHLEDAGVDRWVRGEEHA 248
Query: 109 STHCPLTIEYD 119
S H P +
Sbjct: 249 SDHAPAWVSLR 259
>gi|30585287|gb|AAP36916.1| Homo sapiens APEX nuclease (multifunctional DNA repair enzyme) 1
[synthetic construct]
gi|60653967|gb|AAX29676.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 249 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|317497391|ref|ZP_07955713.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
gi|316895311|gb|EFV17471.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
Length = 250
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 14/134 (10%), Positives = 32/134 (23%), Gaps = 25/134 (18%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+W + + +K++ P + GD N + I + + +
Sbjct: 120 MKWEEDFLAYLKKLEEKKPVIFCGDLNVAVEEIDLKNPKTNRKNAGFTDEEREKMRTILN 179
Query: 50 ----GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ R + + D I
Sbjct: 180 NGFIDTFRYLYPDQTGIYSWWSYRFNARKNNAGWRIDYFIVSECLKDRISDAKILT---- 235
Query: 105 RSKLSTHCPLTIEY 118
S HCP+ +++
Sbjct: 236 DVMGSDHCPIELDF 249
>gi|317154705|ref|YP_004122753.1| exodeoxyribonuclease III [Desulfovibrio aespoeensis Aspo-2]
gi|316944956|gb|ADU64007.1| exodeoxyribonuclease III [Desulfovibrio aespoeensis Aspo-2]
Length = 283
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 28/124 (22%), Gaps = 22/124 (17%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRF 55
Q ++ P V+ GDFN I + F
Sbjct: 162 AQALRKTKPIVVGGDFNTAHCEIDLKNPKANAERSGFLPEERAWIDRFIAHGYVDTFRLF 221
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
R + + D + +V S HCP+
Sbjct: 222 EDGPGHYSWWSYRFNARQNNAGWRIDYFFVSEELRPKVVRAWIEPEVPG----SDHCPIG 277
Query: 116 IEYD 119
+E D
Sbjct: 278 VEID 281
>gi|260772508|ref|ZP_05881424.1| exodeoxyribonuclease III [Vibrio metschnikovii CIP 69.14]
gi|260611647|gb|EEX36850.1| exodeoxyribonuclease III [Vibrio metschnikovii CIP 69.14]
Length = 270
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 33/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------T 39
+Q + L + ++ GD N +
Sbjct: 126 KRQFYQDLMNYLTDYHTPDEAIIVMGDINISPIDLDIGIGEVNRQRWLKTGKCSFQPEER 185
Query: 40 DDFWQKMD---PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ +D D P ++ R++ D + D + V
Sbjct: 186 QWLQRLLDWGLEDTFRKLHPSVEDKFSWFDYRSRGFDDNRGLRIDTILATPSLAIDCVES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
D K S H P+ +
Sbjct: 246 DIDYPLRAIEKPSDHAPIWAVF 267
>gi|291439108|ref|ZP_06578498.1| exodeoxyribonuclease [Streptomyces ghanaensis ATCC 14672]
gi|291342003|gb|EFE68959.1| exodeoxyribonuclease [Streptomyces ghanaensis ATCC 14672]
Length = 273
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 36/133 (27%), Gaps = 22/133 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
LK+ ++ G V+ GD+N + +
Sbjct: 141 LKELRERAAGEGREVVVCGDWNIAHEKADLKNWRGNTKNSGFLPEEREWLSRVLTPTDGG 200
Query: 50 --GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
++ + + R ++ + D + + V T
Sbjct: 201 YVDVVRKLHPDVDGPYSWWSYRGRAFDNDTGWRIDYQMATPGLAERAVEAYVERAATHAE 260
Query: 107 KLSTHCPLTIEYD 119
+ S H P+T+ ++
Sbjct: 261 RWSDHAPVTVVFE 273
>gi|284039609|ref|YP_003389539.1| endonuclease/exonuclease/phosphatase [Spirosoma linguale DSM 74]
gi|283818902|gb|ADB40740.1| Endonuclease/exonuclease/phosphatase [Spirosoma linguale DSM 74]
Length = 299
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 34/119 (28%), Gaps = 7/119 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q G+ + + + I P ++ GD N ++ ++ + + P
Sbjct: 188 RQSGKLMVEKIKE-IAKNTPVILVGDLNSTPDTEQVRTIK-TLLNDAHDVTKMPPYGPEG 245
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
S +D F ++ Y + S H P+ + +
Sbjct: 246 T-----FNSFKFDAPMDNRIDYIFTSKQFDVLKYGVLTDAKEQRYPSDHQPVVAKVVLK 299
>gi|228910912|ref|ZP_04074721.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis IBL
200]
gi|228848863|gb|EEM93708.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis IBL
200]
Length = 352
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ + G ++ GD+N+ +++ +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKEYMNKHYENGDYVIMGGDWNQLVSNAQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|207091978|ref|ZP_03239765.1| exodeoxyribonuclease [Helicobacter pylori HPKX_438_AG0C1]
Length = 250
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 31/128 (24%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ ++ P ++ GD N N I + + +
Sbjct: 127 KKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + ++ D + + S
Sbjct: 186 FRYFYPNKERAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|165870022|ref|ZP_02214679.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0488]
gi|190569230|ref|ZP_03022126.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
Tsiankovskii-I]
gi|227817848|ref|YP_002817857.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. CDC 684]
gi|164714345|gb|EDR19865.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0488]
gi|190559670|gb|EDV13659.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
Tsiankovskii-I]
gi|227003998|gb|ACP13741.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. CDC 684]
Length = 335
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 209 IRKQQVEFLKEYMNKHYKNGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 268
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 269 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 325
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 326 NPVSAVFKLK 335
>gi|91776834|ref|YP_546590.1| exodeoxyribonuclease III (xth) [Methylobacillus flagellatus KT]
gi|91710821|gb|ABE50749.1| exodeoxyribonuclease III (xth) [Methylobacillus flagellatus KT]
Length = 257
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 21/127 (16%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLL 52
+ I+ G VI GD+N + + ++ +
Sbjct: 133 HLESLIRDGRDVVICGDWNIAHQEADLKNWRGNRKNSGFLPEERAWLTDLFGRVGWVDVY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ C N+ + + + + S + ++ S H
Sbjct: 193 RLLHPDTTDACYTWWSNRGQAWAKNVGWRIDYQVATPALAA--RAVSASIYKDARFSDHA 250
Query: 113 PLTIEYD 119
PL ++Y
Sbjct: 251 PLIVDYQ 257
>gi|227552171|ref|ZP_03982220.1| exodeoxyribonuclease III [Enterococcus faecium TX1330]
gi|257892875|ref|ZP_05672528.1| exodeoxyribonuclease [Enterococcus faecium 1,231,408]
gi|227178703|gb|EEI59675.1| exodeoxyribonuclease III [Enterococcus faecium TX1330]
gi|257829254|gb|EEV55861.1| exodeoxyribonuclease [Enterococcus faecium 1,231,408]
Length = 269
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 33/131 (25%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + +K P ++ GD N +I + + +
Sbjct: 143 EAFYNYL-ENLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRLLDNGF 201
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +E R S + D D + +
Sbjct: 202 IDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLAPRLADAKIHTDIMG--- 258
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 259 -SDHCPVELDL 268
>gi|145355749|ref|XP_001422113.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582353|gb|ABP00430.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 273
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 12/134 (8%), Positives = 24/134 (17%), Gaps = 24/134 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKM 46
+++ G + GD N I ++
Sbjct: 144 RAIREHVRALESRGKAVIYCGDLNVAHEEIDLWGRHAENSKSAGFTPEERAAMTRLLEEC 203
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
D + + R + L +
Sbjct: 204 DLVDTFRAHRPDARAFTYWSYRAGAREKNRGW--RLDYILASRRLADSI--VDAYALPDV 259
Query: 107 KLSTHCPLTIEYDF 120
S HCP+ +
Sbjct: 260 LGSDHCPVGLRVAL 273
>gi|75760558|ref|ZP_00740592.1| Endonuclease/Exonuclease/phosphatase family protein [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|218900223|ref|YP_002448634.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus G9842]
gi|228903576|ref|ZP_04067697.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis IBL
4222]
gi|228968193|ref|ZP_04129193.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|74491954|gb|EAO55136.1| Endonuclease/Exonuclease/phosphatase family protein [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|218541450|gb|ACK93844.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus G9842]
gi|228791496|gb|EEM39098.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228856005|gb|EEN00544.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis IBL
4222]
Length = 352
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ + G ++ GD+N+ +++ +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKEYMNKHYENGDYVIMGGDWNQLVSNAQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|119945063|ref|YP_942743.1| exodeoxyribonuclease III [Psychromonas ingrahamii 37]
gi|119863667|gb|ABM03144.1| Exodeoxyribonuclease III [Psychromonas ingrahamii 37]
Length = 269
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 32/137 (23%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L + ++ ++ GD N + + +
Sbjct: 131 QDLNIYLNEYHTAEDQLIVMGDINISRLDLDIGIGEVNAKRWLQTKKCSFLPEEREWLAK 190
Query: 45 KMDPD--GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
MD E + R++ D + D + +
Sbjct: 191 LMDFGLIDTFRLLNPEVSDQYSWFDYRSRGFDDNRGLRIDVILATETLANKTIDTGIDYE 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ E+
Sbjct: 251 LRAIEKPSDHAPIWTEF 267
>gi|37523646|ref|NP_927023.1| hypothetical protein gll4077 [Gloeobacter violaceus PCC 7421]
gi|35214651|dbj|BAC92018.1| gll4077 [Gloeobacter violaceus PCC 7421]
Length = 606
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 15/142 (10%), Positives = 34/142 (23%), Gaps = 27/142 (19%)
Query: 2 LSQ--QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
L + Q L + ++ GD N + L
Sbjct: 465 LRRVAQARKLLAFVKTLNDPD--VLVVGDLNAYGGEDPIKALGAGGLVS---LNLRIPAA 519
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD------------QS 99
E V + LD+ + + + ++ Y+
Sbjct: 520 ERYSYVFEGQSGYLDHALATPSLDKQVTGITEWHVNSDEPPVIDYNTEYSRRNPAAKKDD 579
Query: 100 DLDTRRSKLSTHCPLTIEYDFE 121
+ + S H P+ + + +
Sbjct: 580 RYEPTPYRSSDHDPVVVGLELK 601
>gi|125490347|ref|NP_001074954.1| DNA-(apurinic or apyrimidinic site) lyase [Pan troglodytes]
gi|146286033|sp|A1YFZ3|APEX1_PANPA RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|146286034|sp|A2T6Y4|APEX1_PANTR RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|219474|dbj|BAA02633.1| APEX nuclease [Homo sapiens]
gi|1710232|gb|AAB50212.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|12803075|gb|AAH02338.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|14198174|gb|AAH08145.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|17939646|gb|AAH19291.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|30583311|gb|AAP35900.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|61358640|gb|AAX41599.1| APEX nuclease 1 [synthetic construct]
gi|61362429|gb|AAX42220.1| APEX nuclease 1 [synthetic construct]
gi|61362434|gb|AAX42221.1| APEX nuclease 1 [synthetic construct]
gi|121483845|gb|ABM54218.1| APEX1 [Pan paniscus]
gi|123981822|gb|ABM82740.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|123996645|gb|ABM85924.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|124111123|gb|ABM91939.1| APEX1 [Pan troglodytes]
gi|208965824|dbj|BAG72926.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|1090503|prf||2019234A APEX nuclease
Length = 318
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 249 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|228961316|ref|ZP_04122933.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228798369|gb|EEM45365.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 352
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ + G ++ GD+N+ +++ +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKEYMNKHYENGDYVIMGGDWNQLVSNAQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|229072559|ref|ZP_04205761.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus F65185]
gi|229082318|ref|ZP_04214781.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock4-2]
gi|228700750|gb|EEL53273.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock4-2]
gi|228710535|gb|EEL62508.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus F65185]
Length = 352
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ + G ++ GD+N+ +++ +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKEYMNKHYENGDYVIMGGDWNQLVSNAQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|229193352|ref|ZP_04320302.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus ATCC 10876]
gi|228590153|gb|EEK48022.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus ATCC 10876]
Length = 352
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ + G ++ GD+N+ +++ +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKEYMNKHYENGDYVIMGGDWNQLVSNAQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|206970057|ref|ZP_03231010.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus
AH1134]
gi|218234375|ref|YP_002369878.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus B4264]
gi|228955337|ref|ZP_04117345.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229153262|ref|ZP_04281440.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus m1550]
gi|229181366|ref|ZP_04308695.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus 172560W]
gi|206734634|gb|EDZ51803.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus
AH1134]
gi|218162332|gb|ACK62324.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus B4264]
gi|228602102|gb|EEK59594.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus 172560W]
gi|228629866|gb|EEK86517.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus m1550]
gi|228804470|gb|EEM51081.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 352
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ + G ++ GD+N+ +++ +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKEYMNKHYENGDYVIMGGDWNQLVSNAQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|30023103|ref|NP_834734.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus ATCC 14579]
gi|229049761|ref|ZP_04194318.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH676]
gi|229112516|ref|ZP_04242053.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock1-15]
gi|229130328|ref|ZP_04259287.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-Cer4]
gi|29898663|gb|AAP11935.1| Endonuclease/Exonuclease/phosphatase family protein [Bacillus
cereus ATCC 14579]
gi|228653261|gb|EEL09140.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-Cer4]
gi|228670896|gb|EEL26203.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock1-15]
gi|228722674|gb|EEL74062.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH676]
Length = 352
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ + G ++ GD+N+ +++ +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKEYMNKHYENGDYVIMGGDWNQLVSNAQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|296501782|ref|YP_003663482.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
thuringiensis BMB171]
gi|296322834|gb|ADH05762.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
thuringiensis BMB171]
Length = 788
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVSHFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|49478354|ref|YP_037804.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|301055229|ref|YP_003793440.1| exodeoxyribonuclease III [Bacillus anthracis CI]
gi|49329910|gb|AAT60556.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|300377398|gb|ADK06302.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
Length = 252
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 30/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ V GD N I + + +P
Sbjct: 128 RAYIK-RLDEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDT 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + R + D I + + S
Sbjct: 187 YRYLYPDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITAAKINSEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|300692854|ref|YP_003753849.1| exodeoxyribonuclease III/endonuclease/phosphatase [Ralstonia
solanacearum PSI07]
gi|299079914|emb|CBJ52591.1| putative exodeoxyribonuclease III/endonuclease/phosphatase
[Ralstonia solanacearum PSI07]
Length = 261
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 40/142 (28%), Gaps = 29/142 (20%)
Query: 3 SQQGEW------LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D + + G V+ GD N I +
Sbjct: 119 RQQAKYRFMDLFMQHLVDLRHEKGREVVLCGDVNIVHKEIDIKNWKGNQKNSGCLPEERA 178
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + E R ++ + + +
Sbjct: 179 WLTRLFDEVGYVDVFRTLDPRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGIATTARR 236
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
S + K S H PLT++YD
Sbjct: 237 TSVF--KDIKFSDHAPLTVDYD 256
>gi|229544130|ref|ZP_04433189.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
gi|229325269|gb|EEN90945.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
Length = 251
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 33/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ ++ + + + P ++ GD N I + +
Sbjct: 124 DRMRAYLTE-LDKKKPVIVCGDMNVAHQEIDLKNAKNNVGNSGFTAEERGKMTGLLNSGF 182
Query: 50 -GLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F E+ + NK D + +
Sbjct: 183 IDSFRYFYPEREGAYTWWSYMNKVRERNIGWRIDYFLVSKRLAGRLKDAG----MYPEIM 238
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E +F
Sbjct: 239 GSDHCPVFLETNF 251
>gi|159113893|ref|XP_001707172.1| Endonuclease/Exonuclease/phosphatase [Giardia lamblia ATCC 50803]
gi|157435275|gb|EDO79498.1| Endonuclease/Exonuclease/phosphatase [Giardia lamblia ATCC 50803]
Length = 322
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 29/131 (22%), Gaps = 22/131 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + K+ + G V GD N N I + P
Sbjct: 192 KLISKYIGNLVAAGKDVVYCGDLNVAHNEIDLYNPKSNHFSPGFTDEERNAFSKLLDGHG 251
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + N F++ + LD S
Sbjct: 252 LIDAFRAMHPHRINYSWFS--NFGRAREQKHGWRIDYFVVTSKIFKRVTTVDILDDYNSY 309
Query: 108 LSTHCPLTIEY 118
S H P+ +
Sbjct: 310 -SDHVPIIMTL 319
>gi|323483337|ref|ZP_08088727.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323691163|ref|ZP_08105441.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|323403435|gb|EGA95743.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323504773|gb|EGB20557.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
Length = 251
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 32/135 (23%), Gaps = 25/135 (18%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+W + +K++ P + GD N I + + +
Sbjct: 121 MQWEDDFLSYLKKLEEHKPVIFCGDLNVAHREIDLKNPKSNRKNAGFTDEERGKFTQLLE 180
Query: 50 ----GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
F ++E R K+ D + S
Sbjct: 181 SGFIDTYRHFYPDQEGIYSWWSYRFKAREKNAGWRIDYFCVSKALEDRLESAMIHTEIMG 240
Query: 105 RSKLSTHCPLTIEYD 119
S HCP+ +
Sbjct: 241 ----SDHCPVELVIR 251
>gi|293571415|ref|ZP_06682444.1| exodeoxyribonuclease III [Enterococcus faecium E980]
gi|291608506|gb|EFF37799.1| exodeoxyribonuclease III [Enterococcus faecium E980]
Length = 250
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 32/131 (24%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + +K P ++ GD N +I + + +
Sbjct: 124 EAFYNYL-ENLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRLLDNGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +E R S + D D +
Sbjct: 183 IDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPRLADAKIHTDIMG--- 239
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 240 -SDHCPVELDL 249
>gi|111073593|emb|CAL29439.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Onchocerca
volvulus]
Length = 259
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 33/125 (26%), Gaps = 18/125 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDG 50
L + +K ++AGD+N ++ I D +
Sbjct: 131 LYEKIINLLKNEELTIVAGDYNVALDGIDVFDPILLNGKVCFHIREREKLRAILNLGFKD 190
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + ++ S + + D + + + D + S
Sbjct: 191 AFRISNPDLQQFTWWHYQDNSFRNNQGMRIDYILLSPQAADRLETCYIDDKLRKLKNPSD 250
Query: 111 HCPLT 115
H P+
Sbjct: 251 HTPVI 255
>gi|30263740|ref|NP_846117.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47529159|ref|YP_020508.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49186585|ref|YP_029837.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|65321063|ref|ZP_00394022.1| COG0708: Exonuclease III [Bacillus anthracis str. A2012]
gi|118478961|ref|YP_896112.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|165872421|ref|ZP_02217056.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167639873|ref|ZP_02398142.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170706859|ref|ZP_02897317.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|177652038|ref|ZP_02934584.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190568466|ref|ZP_03021373.1| exodeoxyribonuclease III [Bacillus anthracis Tsiankovskii-I]
gi|196034121|ref|ZP_03101531.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196038388|ref|ZP_03105697.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|196044665|ref|ZP_03111900.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|218904866|ref|YP_002452700.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225865717|ref|YP_002751095.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227813360|ref|YP_002813369.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228916370|ref|ZP_04079939.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228928786|ref|ZP_04091820.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935036|ref|ZP_04097866.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228947401|ref|ZP_04109692.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|229092775|ref|ZP_04223913.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|229123254|ref|ZP_04252458.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|229185967|ref|ZP_04313138.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|229603277|ref|YP_002867975.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|254721165|ref|ZP_05182956.1| exodeoxyribonuclease III [Bacillus anthracis str. A1055]
gi|254735775|ref|ZP_05193481.1| exodeoxyribonuclease III [Bacillus anthracis str. Western North
America USA6153]
gi|254751095|ref|ZP_05203134.1| exodeoxyribonuclease III [Bacillus anthracis str. Vollum]
gi|254759412|ref|ZP_05211437.1| exodeoxyribonuclease III [Bacillus anthracis str. Australia 94]
gi|30258384|gb|AAP27603.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47504307|gb|AAT32983.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49180512|gb|AAT55888.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|118418186|gb|ABK86605.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|164711859|gb|EDR17401.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167512274|gb|EDR87651.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170128277|gb|EDS97146.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|172082407|gb|EDT67472.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190560470|gb|EDV14448.1| exodeoxyribonuclease III [Bacillus anthracis Tsiankovskii-I]
gi|195993195|gb|EDX57153.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196024700|gb|EDX63372.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|196030796|gb|EDX69394.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|218539943|gb|ACK92341.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225789176|gb|ACO29393.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227006454|gb|ACP16197.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228597519|gb|EEK55168.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|228660030|gb|EEL15666.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|228690573|gb|EEL44354.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|228812254|gb|EEM58584.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228824606|gb|EEM70408.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228830871|gb|EEM76474.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843280|gb|EEM88359.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229267685|gb|ACQ49322.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
Length = 252
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 30/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ V GD N I + + +P
Sbjct: 128 RAYIK-RLDEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFIDT 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + R + D I + + S
Sbjct: 187 YRYLYPDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDQITAAKINSEVMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|326381939|ref|ZP_08203632.1| exodeoxyribonuclease III [Gordonia neofelifaecis NRRL B-59395]
gi|326199365|gb|EGD56546.1| exodeoxyribonuclease III [Gordonia neofelifaecis NRRL B-59395]
Length = 281
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 31/126 (24%), Gaps = 19/126 (15%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFW---------------QKMDPDGLLIRFP 56
D+ + +G V+AGD+N + + + G +
Sbjct: 155 HLDKLLGSGGLAVVAGDWNIAPDERDIKNWKGNVKNAGFLPHEREWVAGLLEAGWVDLAR 214
Query: 57 QEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
R K+ + D + D + S H
Sbjct: 215 AHHGDVAGPYAWWSWRGKAFDNDAGWRIDYHLATPALAERAQRTWVDRADAYHLRWSDHA 274
Query: 113 PLTIEY 118
P+T +
Sbjct: 275 PVTAVF 280
>gi|306836965|ref|ZP_07469915.1| exodeoxyribonuclease III [Corynebacterium accolens ATCC 49726]
gi|304567148|gb|EFM42763.1| exodeoxyribonuclease III [Corynebacterium accolens ATCC 49726]
Length = 269
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 19/131 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL- 51
L ++A ++ GDFN D +Q ++ GL
Sbjct: 135 QLSRYAAGH--AQSKLLLTGDFNIAPRDEDVWDIEAFRGKTHVTEPERAAFQMLEEAGLE 192
Query: 52 -LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ R E + + + D + + + + K S
Sbjct: 193 EVTRRFTEDQRYTYFDYKGMRFHKNEGMRIDFQLASPPLAKHVTGARVDMEERAGEKTSD 252
Query: 111 HCPLTIEYDFE 121
HCPL ++D
Sbjct: 253 HCPLHADFDLP 263
>gi|251779069|ref|ZP_04821989.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083384|gb|EES49274.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 251
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 13/126 (10%), Positives = 31/126 (24%), Gaps = 24/126 (19%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ + ++ GD N I + + +
Sbjct: 128 RHYLNE-LNKDKSVIVCGDLNVAHKEIDLKNPKNNRNNAGFSDEEREKFGELLKSGFIDT 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + R + + D D +V + S
Sbjct: 187 YRYFYPGKEGAYSWWSYRFNARANNAGWRIDYFLVSKDFEDRLVDANIHTQIEG----SD 242
Query: 111 HCPLTI 116
HCP+ +
Sbjct: 243 HCPVEL 248
>gi|239930740|ref|ZP_04687693.1| exodeoxyribonuclease [Streptomyces ghanaensis ATCC 14672]
Length = 266
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 36/133 (27%), Gaps = 22/133 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
LK+ ++ G V+ GD+N + +
Sbjct: 134 LKELRERAAGEGREVVVCGDWNIAHEKADLKNWRGNTKNSGFLPEEREWLSRVLTPTDGG 193
Query: 50 --GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
++ + + R ++ + D + + V T
Sbjct: 194 YVDVVRKLHPDVDGPYSWWSYRGRAFDNDTGWRIDYQMATPGLAERAVEAYVERAATHAE 253
Query: 107 KLSTHCPLTIEYD 119
+ S H P+T+ ++
Sbjct: 254 RWSDHAPVTVVFE 266
>gi|254445739|ref|ZP_05059215.1| endonuclease/exonuclease/phosphatase family [Verrucomicrobiae
bacterium DG1235]
gi|198260047|gb|EDY84355.1| endonuclease/exonuclease/phosphatase family [Verrucomicrobiae
bacterium DG1235]
Length = 278
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 25/112 (22%), Gaps = 6/112 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ + + P + GD N +S + L
Sbjct: 168 AKLILDRIATLVSPNEPHFLMGDLNATPDSPPIK------LISAKLQDTRLHSTGPVFGS 221
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + R +I +Y S H P+ I+
Sbjct: 222 EGTFNAFDPTTIPTRRIDYIFASPENTITAYATLSDLIDGRYPSDHFPIVIK 273
>gi|116328536|ref|YP_798256.1| exodeoxyribonuclease III [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116331264|ref|YP_800982.1| exodeoxyribonuclease III [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116121280|gb|ABJ79323.1| Exodeoxyribonuclease III [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116124953|gb|ABJ76224.1| Exodeoxyribonuclease III [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 254
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 27/126 (21%), Gaps = 22/126 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIR 54
A ++ K ++ GD N D
Sbjct: 133 AAKRRKKQPNILLCGDINIAHTPQDIHDPKGNAKSSGFLPEEREWLTQFLEKGWVDTFRY 192
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
EK+ R + F + QS R LS H PL
Sbjct: 193 LYPEKQEYSWWTFRAGARAKNKGW--RIDYFFVTAELKKNVKSQSIY--RDKPLSDHAPL 248
Query: 115 TIEYDF 120
+E
Sbjct: 249 ELEIKL 254
>gi|89052912|ref|YP_508363.1| exodeoxyribonuclease III [Jannaschia sp. CCS1]
gi|88862461|gb|ABD53338.1| exodeoxyribonuclease III [Jannaschia sp. CCS1]
Length = 262
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 29/133 (21%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ WA T ++ GD N +
Sbjct: 133 MRDWAKT--DTPQKSILLGDLNIAPREDDVWSHKQLLKVVSHTPIEVEHLAEAQDAGGWV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ + + R+ D R + S S + K
Sbjct: 191 DVTRKDIPDGPLFSWWSYRSPDW-DNADKGRRLDHVWATPDISNAAHSSRIARHVRGWEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFATFDL 262
>gi|152974643|ref|YP_001374160.1| endonuclease/exonuclease/phosphatase [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023395|gb|ABS21165.1| Endonuclease/exonuclease/phosphatase [Bacillus cytotoxicus NVH
391-98]
Length = 790
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + ++ QK P V+ GD N S + ++ ++
Sbjct: 673 QLAQEVNRFVKGIQKRDANAPVVVVGDMNDFEFSKPLQALKGDTLQN---MLETVSKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + N I + + +++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIANHTIVDPVHL----NTNMMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KG 123
K
Sbjct: 786 KA 787
>gi|119899953|ref|YP_935166.1| exodeoxyribonuclease III [Azoarcus sp. BH72]
gi|119672366|emb|CAL96280.1| Exodeoxyribonuclease III [Azoarcus sp. BH72]
Length = 260
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 35/141 (24%), Gaps = 26/141 (18%)
Query: 3 SQQG-----EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------- 49
QQ E + + G VI GD+N I + + +
Sbjct: 119 RQQAKFSFMERFMPRLAELRRCGQEVVICGDWNIAHREIDLKNWKSNQKNSGFLPEERAW 178
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ E N+ + + + +
Sbjct: 179 IGTLFDTHGWVDVYRALYPEATGDSYTWWSNRGQAWAKNVGWRIDYQIATPGIAARARAG 238
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
S + + S H PL ++YD
Sbjct: 239 SVY--KAQRFSDHAPLVVDYD 257
>gi|83593119|ref|YP_426871.1| exodeoxyribonuclease III [Rhodospirillum rubrum ATCC 11170]
gi|83576033|gb|ABC22584.1| Exodeoxyribonuclease III [Rhodospirillum rubrum ATCC 11170]
Length = 266
Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats.
Identities = 12/120 (10%), Positives = 27/120 (22%), Gaps = 18/120 (15%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGLLIRFPQEKE 60
P ++ GDFN + + D + L
Sbjct: 147 PDTPVILGGDFNVCPDDLDVYDPAGWANDALCRPETRQRFRALVFLGYTDALRALNPGAP 206
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + D+ + + + +K S H P + +
Sbjct: 207 LFTFWDYQAGAWQKDHGLRIDHLLLNPAAADRLSAAGVDRATRGHAKSSDHAPSWVTLEL 266
>gi|218264352|ref|ZP_03478209.1| hypothetical protein PRABACTJOHN_03900 [Parabacteroides johnsonii
DSM 18315]
gi|218222083|gb|EEC94733.1| hypothetical protein PRABACTJOHN_03900 [Parabacteroides johnsonii
DSM 18315]
Length = 287
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 10/105 (9%), Positives = 23/105 (21%), Gaps = 3/105 (2%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFW-QKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ + +P ++ GDFN + +
Sbjct: 182 KLLAGNLPVIVTGDFNAVPTDDPIKVLTDEKDLRHLTHTRTLAPLCYGPEWTFHDYGRVP 241
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ I + ++ + S HCP+
Sbjct: 242 LDERVW--IDYIFIKGNIKVLRHGVLTESLGNLYPSDHCPVISRL 284
>gi|207742014|ref|YP_002258406.1| exodeoxyribonuclease III protein [Ralstonia solanacearum IPO1609]
gi|206593400|emb|CAQ60327.1| exodeoxyribonuclease III protein [Ralstonia solanacearum IPO1609]
Length = 261
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 29/142 (20%)
Query: 3 SQQGEW------LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D + + G V+ GD N I +
Sbjct: 119 RQQAKYRFMDLFMQHLVDLRHEKGREVVLCGDVNIVHKEIDIKNWKGNQKNSGCLPEERA 178
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + E R ++ + + +
Sbjct: 179 WLTRLFDEVGYVDVFRTLDTRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGIAATARR 236
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
S R K S H PLT++YD
Sbjct: 237 TSIF--RDIKFSDHAPLTVDYD 256
>gi|967268|gb|AAC47024.1| class II apurinic/apyrimidinic(AP)-endonuclease [Dictyostelium
discoideum]
Length = 361
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 37/143 (25%), Gaps = 26/143 (18%)
Query: 2 LSQQGEWLKKW-AD-----QKIKTGIPFVIAGDFNRKINSIGDTDDF------------- 42
L + +K+W D +K+ P + GD N I +
Sbjct: 220 LQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEER 279
Query: 43 --WQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ G + R + + F++ + S
Sbjct: 280 TSFSNFLEKGYVDSYRHFNPGKEGSYTFWSYLGGGRSKNVGWRLDYFVVSKRL-MDSIKI 338
Query: 99 SDLDTRRSKLSTHCP--LTIEYD 119
S S HCP + ++ +
Sbjct: 339 SPFHRTSVMGSDHCPIGVVVDLN 361
>gi|66817330|ref|XP_642518.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
gi|161784257|sp|P51173|APEA_DICDI RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=Class II apurinic/apyrimidinic(AP)-endonuclease
gi|60470608|gb|EAL68586.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
Length = 361
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 37/143 (25%), Gaps = 26/143 (18%)
Query: 2 LSQQGEWLKKW-AD-----QKIKTGIPFVIAGDFNRKINSIGDTDDF------------- 42
L + +K+W D +K+ P + GD N I +
Sbjct: 220 LQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIEER 279
Query: 43 --WQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ G + R + + F++ + S
Sbjct: 280 TSFSNFLEKGYVDSYRHFNPGKEGSYTFWSYLGGGRSKNVGWRLDYFVVSKRL-MDSIKI 338
Query: 99 SDLDTRRSKLSTHCP--LTIEYD 119
S S HCP + ++ +
Sbjct: 339 SPFHRTSVMGSDHCPIGVVVDLN 361
>gi|222098525|ref|YP_002532583.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus Q1]
gi|221242584|gb|ACM15294.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus Q1]
Length = 327
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 201 IRKQQVEFLKEYMNKHYKNGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 260
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 261 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 317
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 318 NPVSAVFKLK 327
>gi|188590962|ref|YP_001795562.1| exodeoxyribonuclease iii/endonuclease/phosphatase [Cupriavidus
taiwanensis LMG 19424]
gi|170937856|emb|CAP62840.1| putative EXODEOXYRIBONUCLEASE III/endonuclease/phosphatase
[Cupriavidus taiwanensis LMG 19424]
Length = 258
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 34/137 (24%), Gaps = 23/137 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+ E Q +G V+ GD N I + +
Sbjct: 125 RFLEAFLPHLLQLKASGREIVLCGDVNIAHKEIDIKNWKGNLKNSGFLPEERAWIGELFD 184
Query: 50 -----GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + + R ++ D + + +
Sbjct: 185 VHGYVDVFRKLDPRPDQYTWWSNRGQAYAKNVGWRIDYHLATPKIADTAQLCSI----YK 240
Query: 105 RSKLSTHCPLTIEYDFE 121
K S H PL+I+Y+F
Sbjct: 241 DEKFSDHAPLSIDYNFP 257
>gi|303328283|ref|ZP_07358721.1| exodeoxyribonuclease III [Desulfovibrio sp. 3_1_syn3]
gi|302861613|gb|EFL84549.1| exodeoxyribonuclease III [Desulfovibrio sp. 3_1_syn3]
Length = 268
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 31/126 (24%), Gaps = 23/126 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGLLIRF 55
++ + P V+ GDFN +I + M +
Sbjct: 147 AEECRKSKPIVVCGDFNIAHQAIDLARPKQNVKNTGFLPEERAFLDRFTAMGYVDTFRKV 206
Query: 56 PQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
++ + ++ F + + S HCP+
Sbjct: 207 HGDQPDQYSWWSYKTRAREKNIGW--RIDYFFVSEELA--PAVSDAWIENNVYGSDHCPV 262
Query: 115 TIEYDF 120
+E +
Sbjct: 263 GLELEL 268
>gi|254786174|ref|YP_003073603.1| exonuclease III [Teredinibacter turnerae T7901]
gi|237686598|gb|ACR13862.1| exodeoxyribonuclease III [Teredinibacter turnerae T7901]
Length = 273
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 30/138 (21%), Gaps = 27/138 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQKM 46
L+ + ++ GD N I + + +
Sbjct: 135 LQSLLTGQYSPEDNLIVMGDMNISPQDIDIGIGEDNRKRWLRSGKCSFLPEEREWLDRLL 194
Query: 47 ---DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
D L P+ + R++ L +
Sbjct: 195 CWGLHDTLRKLQPEADDLYSWFDYRSRGYEREPRRGLRIDLILATQQLVEKCSNAGIDLE 254
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S HCP+ E+
Sbjct: 255 IRGMEKPSDHCPIWAEFS 272
>gi|85703387|ref|ZP_01034491.1| exodeoxyribonuclease III, putative [Roseovarius sp. 217]
gi|85672315|gb|EAQ27172.1| exodeoxyribonuclease III, putative [Roseovarius sp. 217]
Length = 262
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 28/133 (21%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W + ++ GD N + D +
Sbjct: 133 MRDWF--RDSRPEKSILVGDLNIAPREDDVWNHKQLLKIVSHTPVEVEHLGDVMEAGGWQ 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ E + R S D R + S +
Sbjct: 191 DVTRADIPEGQLYSWWSYR-ASDWDAANKGRRLDHVWASGDIRAAAHSSRILRGARGWDQ 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFATFDL 262
>gi|260432325|ref|ZP_05786296.1| exodeoxyribonuclease III [Silicibacter lacuscaerulensis ITI-1157]
gi|260416153|gb|EEX09412.1| exodeoxyribonuclease III [Silicibacter lacuscaerulensis ITI-1157]
Length = 262
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 27/133 (20%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W + ++ GD N +
Sbjct: 133 MRDWF--HAEKPQKSILVGDLNIAPREDDVWSHKQLLKVVSHTPIEVAHLAETQDAGGWV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ + E + R D R + S S K
Sbjct: 191 DITRQDIPEGQLYSWWSYR-ARDWDAANKGRRLDHVWATPDISNAGHSSRILRDARGWEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFATFDL 262
>gi|257883889|ref|ZP_05663542.1| AP endonuclease [Enterococcus faecium 1,231,501]
gi|257819727|gb|EEV46875.1| AP endonuclease [Enterococcus faecium 1,231,501]
Length = 250
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 34/131 (25%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
E + + +K P +I GD N +I + ++ +G
Sbjct: 124 EAFYNYL-ENLKKQKPVIICGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRLLDNGF 182
Query: 52 LIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ F + R S + D D +
Sbjct: 183 VDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYFLASKDLEPRLADAKIHTDIMG--- 239
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 240 -SDHCPVELDL 249
>gi|256787199|ref|ZP_05525630.1| exodeoxyribonuclease (secreted protein) [Streptomyces lividans
TK24]
Length = 267
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 22/133 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
LK+ ++ G V+ GD+N + K +
Sbjct: 134 LKELRERAAAEGREVVVCGDWNIAHREADLKNWRANKKNSGFLPEEREWLGRVLDPAEGG 193
Query: 50 --GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
++ + + R ++ + D + V T
Sbjct: 194 YVDVVRALHPDVEGPYSWWSYRGRAFDNDAGWRIDYHVSTPGLAAKAVKGYVERAATHAE 253
Query: 107 KLSTHCPLTIEYD 119
+ S H P+T+ YD
Sbjct: 254 RWSDHAPVTVVYD 266
>gi|300705466|ref|YP_003747069.1| exodeoxyribonuclease III/endonuclease/phosphatase [Ralstonia
solanacearum CFBP2957]
gi|299073130|emb|CBJ44488.1| putative exodeoxyribonuclease III/endonuclease/phosphatase
[Ralstonia solanacearum CFBP2957]
Length = 261
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 29/142 (20%)
Query: 3 SQQGEW------LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D + + G V+ GD N I +
Sbjct: 119 RQQAKYRFMDLFMQHLVDLRHEKGREVVLCGDVNIVHKEIDIKNWKGNQKNSGCLPEERA 178
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + E R ++ + + +
Sbjct: 179 WLTRLFDEVGYVDVFRTLDTRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGIAATARR 236
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
S R K S H PLT++YD
Sbjct: 237 TSIF--RDIKFSDHAPLTVDYD 256
>gi|188585577|ref|YP_001917122.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350264|gb|ACB84534.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 251
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 30/131 (22%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ K + + + P ++ GD N I + K +
Sbjct: 124 DAFKNYLV-NLDSEKPVIVCGDLNVAHKEIDLKNPKNNKRNAGFTEEERNKLTELLNAGF 182
Query: 50 -GLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + K+ D + +
Sbjct: 183 IDTFRYFYPDTEGAYTWWSYITKARERNAGWRIDYFLASQKLDNWLTDAEIH----ADIM 238
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 239 GSDHCPVALKL 249
>gi|262198203|ref|YP_003269412.1| endonuclease/exonuclease/phosphatase [Haliangium ochraceum DSM
14365]
gi|262081550|gb|ACY17519.1| Endonuclease/exonuclease/phosphatase [Haliangium ochraceum DSM
14365]
Length = 1075
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 35/137 (25%), Gaps = 21/137 (15%)
Query: 6 GEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
E L W D F+I GD N Q L F +
Sbjct: 819 AEALADWLGTDPTSSGDDDFLIIGDLNAYAMEDPI--AALQAGGYTDLADAFIGADVAYS 876
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDTRRS 106
+ LDY + + + + + Y+ S D
Sbjct: 877 YIFDGQAGYLDYALANDALLAQVTGVHEWHINTDEPIALDYNVEFKSPGQIDSLYDDGPY 936
Query: 107 KLSTHCPLTIEYDFEKG 123
+ S H P+ I + G
Sbjct: 937 RASDHDPVVIGLALQSG 953
>gi|332670164|ref|YP_004453172.1| 5'-Nucleotidase domain-containing protein [Cellulomonas fimi ATCC
484]
gi|332339202|gb|AEE45785.1| 5'-Nucleotidase domain-containing protein [Cellulomonas fimi ATCC
484]
Length = 1651
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 31/129 (24%), Gaps = 18/129 (13%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L+ W + GDFN D D +
Sbjct: 694 RQATALRDWVPTIQGDTEAVALVGDFNAYTRE----DPLQVLYDAGYVDAVQQLAPGQWS 749
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR--------------SKLS 109
SLD+ +++ ++ ++S + S
Sbjct: 750 YTFSGLSGSLDHVLLNEAALARATGADVWEINAEESIALEYSRYNYHGTLFYADDVYRSS 809
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 810 DHDPVVVGL 818
>gi|311109328|ref|YP_003982181.1| exodeoxyribonuclease III 2 [Achromobacter xylosoxidans A8]
gi|310764017|gb|ADP19466.1| exodeoxyribonuclease III 2 [Achromobacter xylosoxidans A8]
Length = 262
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 23/137 (16%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------- 42
L + G W+ + TG F+I GD+N I +
Sbjct: 127 LDRFGPWIDALMHEHKTTGREFIICGDWNIAHKEIDLKNWKGNLKNSGFLPEERAWLTDV 186
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ K + + R ++ + + + + +
Sbjct: 187 FDKRGFVDVFRTIDDRPDQYTWWSNRGQAWAKNVGW--RIDYQIATPGIAARARNVAIY- 243
Query: 103 TRRSKLSTHCPLTIEYD 119
+ + S H PLTI+YD
Sbjct: 244 -KDERFSDHAPLTIDYD 259
>gi|304394302|ref|ZP_07376225.1| exodeoxyribonuclease III protein [Ahrensia sp. R2A130]
gi|303293742|gb|EFL88119.1| exodeoxyribonuclease III protein [Ahrensia sp. R2A130]
Length = 269
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 28/125 (22%), Gaps = 23/125 (18%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDGLLIRFPQ 57
+P ++ GD N + D + P
Sbjct: 145 DGDVPAILVGDLNIAPLETDVWSHKQLLKVVSHTPVETDGLNEVMAKGGWTDLIRQHIPA 204
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLSTHCPLT 115
E R+K D R + + + K S H P+
Sbjct: 205 EDILFTWWSYRSKDW-DAADKGRRLDHIWSSPKLASSLSKIEVLREARGWEKPSDHVPVI 263
Query: 116 IEYDF 120
+DF
Sbjct: 264 ARFDF 268
>gi|260768888|ref|ZP_05877822.1| exodeoxyribonuclease III [Vibrio furnissii CIP 102972]
gi|260616918|gb|EEX42103.1| exodeoxyribonuclease III [Vibrio furnissii CIP 102972]
gi|315180582|gb|ADT87496.1| exodeoxyribonuclease III [Vibrio furnissii NCTC 11218]
Length = 269
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 16/143 (11%), Positives = 33/143 (23%), Gaps = 26/143 (18%)
Query: 3 SQQGEW-LKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q L + + ++ GD N +
Sbjct: 126 KRQFYADLMTYLNDYHTKDDQLIVMGDINISPIDLDIGIGEPNRQRWLKTGKCSFQPEER 185
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + + G F + + R+K D + D + + V
Sbjct: 186 QWLKTLLDWGFEDTFRKLHPAVNDQFSWFDYRSKGFDDNRGLRIDVILATPSLAATCVEA 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 246 GIDYELRGIEKPSDHAPIWSVFS 268
>gi|320334572|ref|YP_004171283.1| endonuclease/exonuclease/phosphatase [Deinococcus maricopensis DSM
21211]
gi|319755861|gb|ADV67618.1| Endonuclease/exonuclease/phosphatase [Deinococcus maricopensis DSM
21211]
Length = 1195
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 17/147 (11%), Positives = 36/147 (24%), Gaps = 29/147 (19%)
Query: 4 QQGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ + L + D ++ GDFN N + L + ++
Sbjct: 685 QQAQALLNFVDTLKTATGDQDVLLMGDFNAYGNEDPINTIVAGGFES---LNKRIPAEDR 741
Query: 62 TCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ--------------- 98
LD+ + + + ++ Y+
Sbjct: 742 YSYQFGSLFGYLDHALATNTLAGQVTGITEWHINSDEPTVADYNVEFKNVPGCTSASCTG 801
Query: 99 -SDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ S H P+ + + N
Sbjct: 802 LDLYGPGPFRASDHDPVLVGLNLTPTN 828
>gi|299821801|ref|ZP_07053689.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
gi|299817466|gb|EFI84702.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
Length = 254
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 37/135 (27%), Gaps = 24/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ + P V GD N I + + ++ +G
Sbjct: 125 QAFADHIIA-LDKQKPVVFCGDLNVAHQEIDLKNPKTNRKNPGFSDQERAMFGQLLDNGF 183
Query: 52 LIRF----PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ F P+++++ R + D S SI
Sbjct: 184 VDTFRYLYPEQEDAYSWWSYRMNARSRNVGWRIDYFVVSSRLSDSIQEARIHAEVLG--- 240
Query: 108 LSTHCPLTIEYDFEK 122
S HCP+ +E E+
Sbjct: 241 -SDHCPVELEIAIEE 254
>gi|170051904|ref|XP_001861978.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167872934|gb|EDS36317.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 340
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 38/139 (27%), Gaps = 23/139 (16%)
Query: 2 LSQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------- 49
L ++ W +K+ + + P ++ GD N I + K +
Sbjct: 205 LPKRMRWDEKFLQYLRDLDAKKPVILCGDMNVAHAEIDLANPKTNKKNAGFTQEERDGMT 264
Query: 50 --------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ E+++ + + F+ + +
Sbjct: 265 NLLSHGFVDTFRQRYPEQKAA-YTFWTYMGNARAKNVGWRLDYFIASE--RLAGRVVDSV 321
Query: 102 DTRRSKLSTHCPLTIEYDF 120
S HCP+T+ +
Sbjct: 322 IRPGVYGSDHCPITLLLNL 340
>gi|53717833|ref|YP_106819.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei K96243]
gi|53724973|ref|YP_102006.1| exodeoxyribonuclease III [Burkholderia mallei ATCC 23344]
gi|67642475|ref|ZP_00441231.1| exodeoxyribonuclease III [Burkholderia mallei GB8 horse 4]
gi|76809547|ref|YP_331785.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1710b]
gi|121600000|ref|YP_994076.1| exodeoxyribonuclease III [Burkholderia mallei SAVP1]
gi|124386596|ref|YP_001028261.1| exodeoxyribonuclease III [Burkholderia mallei NCTC 10229]
gi|126438610|ref|YP_001057228.1| exodeoxyribonuclease III [Burkholderia pseudomallei 668]
gi|126449280|ref|YP_001081905.1| exodeoxyribonuclease III [Burkholderia mallei NCTC 10247]
gi|126452249|ref|YP_001064469.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1106a]
gi|134284078|ref|ZP_01770772.1| exodeoxyribonuclease III [Burkholderia pseudomallei 305]
gi|167001940|ref|ZP_02267730.1| exodeoxyribonuclease III [Burkholderia mallei PRL-20]
gi|167717548|ref|ZP_02400784.1| exodeoxyribonuclease III [Burkholderia pseudomallei DM98]
gi|167813690|ref|ZP_02445370.1| exodeoxyribonuclease III [Burkholderia pseudomallei 91]
gi|167822205|ref|ZP_02453676.1| exodeoxyribonuclease III [Burkholderia pseudomallei 9]
gi|167843799|ref|ZP_02469307.1| exodeoxyribonuclease III [Burkholderia pseudomallei B7210]
gi|167892298|ref|ZP_02479700.1| exodeoxyribonuclease III [Burkholderia pseudomallei 7894]
gi|167900793|ref|ZP_02487998.1| exodeoxyribonuclease III [Burkholderia pseudomallei NCTC 13177]
gi|167909017|ref|ZP_02496108.1| exodeoxyribonuclease III [Burkholderia pseudomallei 112]
gi|167917055|ref|ZP_02504146.1| exodeoxyribonuclease III [Burkholderia pseudomallei BCC215]
gi|217424907|ref|ZP_03456403.1| exodeoxyribonuclease III [Burkholderia pseudomallei 576]
gi|226194644|ref|ZP_03790239.1| exodeoxyribonuclease III [Burkholderia pseudomallei Pakistan 9]
gi|237810366|ref|YP_002894817.1| exodeoxyribonuclease III [Burkholderia pseudomallei MSHR346]
gi|242317805|ref|ZP_04816821.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1106b]
gi|254177087|ref|ZP_04883744.1| exodeoxyribonuclease III [Burkholderia mallei ATCC 10399]
gi|254182229|ref|ZP_04888826.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1655]
gi|254188156|ref|ZP_04894668.1| exodeoxyribonuclease III [Burkholderia pseudomallei Pasteur 52237]
gi|254196563|ref|ZP_04902987.1| exodeoxyribonuclease III [Burkholderia pseudomallei S13]
gi|254203686|ref|ZP_04910046.1| exodeoxyribonuclease III [Burkholderia mallei FMH]
gi|254208662|ref|ZP_04915010.1| exodeoxyribonuclease III [Burkholderia mallei JHU]
gi|254260883|ref|ZP_04951937.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1710a]
gi|254295731|ref|ZP_04963188.1| exodeoxyribonuclease III [Burkholderia pseudomallei 406e]
gi|254360283|ref|ZP_04976553.1| exodeoxyribonuclease III [Burkholderia mallei 2002721280]
gi|52208247|emb|CAH34178.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei K96243]
gi|52428396|gb|AAU48989.1| exodeoxyribonuclease III [Burkholderia mallei ATCC 23344]
gi|76579000|gb|ABA48475.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1710b]
gi|121228810|gb|ABM51328.1| exodeoxyribonuclease III [Burkholderia mallei SAVP1]
gi|124294616|gb|ABN03885.1| exodeoxyribonuclease III [Burkholderia mallei NCTC 10229]
gi|126218103|gb|ABN81609.1| exodeoxyribonuclease III [Burkholderia pseudomallei 668]
gi|126225891|gb|ABN89431.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1106a]
gi|126242150|gb|ABO05243.1| exodeoxyribonuclease III [Burkholderia mallei NCTC 10247]
gi|134244530|gb|EBA44634.1| exodeoxyribonuclease III [Burkholderia pseudomallei 305]
gi|147745198|gb|EDK52278.1| exodeoxyribonuclease III [Burkholderia mallei FMH]
gi|147750538|gb|EDK57607.1| exodeoxyribonuclease III [Burkholderia mallei JHU]
gi|148029523|gb|EDK87428.1| exodeoxyribonuclease III [Burkholderia mallei 2002721280]
gi|157806098|gb|EDO83268.1| exodeoxyribonuclease III [Burkholderia pseudomallei 406e]
gi|157935836|gb|EDO91506.1| exodeoxyribonuclease III [Burkholderia pseudomallei Pasteur 52237]
gi|160698128|gb|EDP88098.1| exodeoxyribonuclease III [Burkholderia mallei ATCC 10399]
gi|169653306|gb|EDS85999.1| exodeoxyribonuclease III [Burkholderia pseudomallei S13]
gi|184212767|gb|EDU09810.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1655]
gi|217391927|gb|EEC31953.1| exodeoxyribonuclease III [Burkholderia pseudomallei 576]
gi|225933345|gb|EEH29337.1| exodeoxyribonuclease III [Burkholderia pseudomallei Pakistan 9]
gi|237506823|gb|ACQ99141.1| exodeoxyribonuclease III [Burkholderia pseudomallei MSHR346]
gi|238523636|gb|EEP87073.1| exodeoxyribonuclease III [Burkholderia mallei GB8 horse 4]
gi|242141044|gb|EES27446.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1106b]
gi|243062348|gb|EES44534.1| exodeoxyribonuclease III [Burkholderia mallei PRL-20]
gi|254219572|gb|EET08956.1| exodeoxyribonuclease III [Burkholderia pseudomallei 1710a]
Length = 256
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 43/144 (29%), Gaps = 31/144 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++K ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELKAKREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + + E R ++ + + + +
Sbjct: 177 WLTKLFDDVGYVDVFRTLDPRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAGTAKN 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFE 121
S R K S H PLT++YD++
Sbjct: 235 TSIF--RDIKFSDHAPLTVDYDYK 256
>gi|325519880|gb|EGC99152.1| exodeoxyribonuclease III [Burkholderia sp. TJI49]
Length = 257
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 31/145 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D ++K ++ GD N I +
Sbjct: 119 RQQAKY--RFMDAFMPHLAELKKKREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + + E R ++ + + +
Sbjct: 177 WLTKLFDDVGYVDVFRTLDPRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAGTAKS 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFEK 122
S + K S H PLT++YD++K
Sbjct: 235 TSIF--KDIKFSDHAPLTVDYDYKK 257
>gi|262283216|ref|ZP_06060983.1| LPXTG cell wall surface protein [Streptococcus sp. 2_1_36FAA]
gi|262261468|gb|EEY80167.1| LPXTG cell wall surface protein [Streptococcus sp. 2_1_36FAA]
Length = 779
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 9/120 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + + + + FV+ GDFN S ++ +
Sbjct: 552 EEAKILNNFVQEGLRQNPNLKFVLTGDFNDFEFSETAKAIAGNELINLMQEHDAA---DR 608
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ I I + + S H P+ ++ DF
Sbjct: 609 YSYFYRGSNQSLDNIFISKNLAGKAIFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 664
>gi|157151208|ref|YP_001450928.1| LPXTG cell wall surface protein [Streptococcus gordonii str.
Challis substr. CH1]
gi|157076002|gb|ABV10685.1| LPXTG cell wall surface protein, nuclease/phosphatase domain
[Streptococcus gordonii str. Challis substr. CH1]
Length = 779
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 9/120 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + + + + FV+ GDFN S ++ +
Sbjct: 552 EEAKILNNFVQEGLRQNPNLKFVLTGDFNDFEFSETAKAIAGNELINLMQEHDAA---DR 608
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + SLD I ++ I I + + S H P+ ++ DF
Sbjct: 609 YSYFYRGSNQSLDNIFISKNLAGKAIFAPVHI----NASFMEEHGRASDHDPVVVQLDFS 664
>gi|126730406|ref|ZP_01746217.1| exodeoxyribonuclease III, putative [Sagittula stellata E-37]
gi|126709139|gb|EBA08194.1| exodeoxyribonuclease III, putative [Sagittula stellata E-37]
Length = 262
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 27/133 (20%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W + ++ GD N D
Sbjct: 133 MRDWF--HTERPERAILVGDLNIAPREDDVWDHKKLLKIVSHTPIEVEHLGAAQDAGGWV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ + + R K D R + + S +
Sbjct: 191 DITRKDIPDGRLFSWWSYRAKDW-DAADKGRRLDHIWATPDIADAGHSSRILRAARGWEQ 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFATFDL 262
>gi|167624545|ref|YP_001674839.1| exonuclease III [Shewanella halifaxensis HAW-EB4]
gi|167354567|gb|ABZ77180.1| exodeoxyribonuclease III [Shewanella halifaxensis HAW-EB4]
Length = 268
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 37/138 (26%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TDDFWQK 45
+ L ++ ++ I GD N + ++ +
Sbjct: 131 KDLMQYLNEYHSADEDIAIIGDINISPVDLDIGIGEPNAKRWLKTGKCSFQPEEREWLKT 190
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ GL+ F + + R+K +D + D + + D
Sbjct: 191 LMDWGLVDTFRELHPTRSERYSWFDYRSKGFVDNRGLRIDVILATKSLAQHLTESDVDYE 250
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 251 LRGIEKPSDHAPIWSSFS 268
>gi|32024|emb|CAA42437.1| HAP1 [Homo sapiens]
Length = 318
Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQEAQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 249 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|270159291|ref|ZP_06187947.1| exodeoxyribonuclease III [Legionella longbeachae D-4968]
gi|289165885|ref|YP_003456023.1| exodeoxyribonuclease [Legionella longbeachae NSW150]
gi|269987630|gb|EEZ93885.1| exodeoxyribonuclease III [Legionella longbeachae D-4968]
gi|288859058|emb|CBJ12987.1| putative exodeoxyribonuclease [Legionella longbeachae NSW150]
Length = 260
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 33/131 (25%), Gaps = 23/131 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E Q G +I GD+N I + + M
Sbjct: 128 EQFANHLMQLKNEGRELIICGDYNIAHKEIDLKNWKSNRKNSGFLPEERAWMDELFGGMG 187
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
QE+E R ++ ++ F R +
Sbjct: 188 FVDAFRVHNQEEEQYTWWSFRGRAWEKNVGW--RIDYQVVTPGFIED--VVYSHIFRDVR 243
Query: 108 LSTHCPLTIEY 118
LS H PL IEY
Sbjct: 244 LSDHAPLLIEY 254
>gi|107101992|ref|ZP_01365910.1| hypothetical protein PaerPA_01003039 [Pseudomonas aeruginosa PACS2]
Length = 270
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 24/137 (17%), Gaps = 27/137 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ + K V+ GD N +
Sbjct: 133 LQSLLENSFKPEQALVVMGDINISPEDCDIGIGEENRKRWLKTGKCSFLPEEREWLATLK 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDL 101
E + R++ D L
Sbjct: 193 NWGLVDSFRALNPEVNDRFSWFDYRSRGFEDNPKRGLRIDVILASRVLQSRFKDAGIDYD 252
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +E
Sbjct: 253 LRSMEKPSDHAPIWLEL 269
>gi|145220782|ref|YP_001131460.1| exodeoxyribonuclease III Xth [Mycobacterium gilvum PYR-GCK]
gi|315442264|ref|YP_004075143.1| exodeoxyribonuclease III [Mycobacterium sp. Spyr1]
gi|145213268|gb|ABP42672.1| Exodeoxyribonuclease III [Mycobacterium gilvum PYR-GCK]
gi|315260567|gb|ADT97308.1| Exodeoxyribonuclease III [Mycobacterium sp. Spyr1]
Length = 272
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 12/125 (9%), Positives = 27/125 (21%), Gaps = 23/125 (18%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIR---FPQEK 59
P + GD+N D + + G F
Sbjct: 147 DPSTPVALVGDWNIAPVDDDVWDISLFSESTHVTAPERAAFNAIVDAGFTDVVRPFTPGP 206
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-----LSTHCPL 114
+ + D + + + + + + K S H P+
Sbjct: 207 GTFTYWDYTQLRFPKNRGMRIDFILGSPTLAELVTHAEIARDERKTGKNRVGSPSDHAPV 266
Query: 115 TIEYD 119
++
Sbjct: 267 VVDLR 271
>gi|56460559|ref|YP_155840.1| exonuclease III [Idiomarina loihiensis L2TR]
gi|56179569|gb|AAV82291.1| Exonuclease III [Idiomarina loihiensis L2TR]
Length = 269
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 13/137 (9%), Positives = 27/137 (19%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L + D + P ++ GD N +
Sbjct: 131 QDLMSYLDNDLSPEQPVIVMGDVNISRIDLDIGIGENNAKRWLKTGKCSFLPEEREWIQR 190
Query: 43 WQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + R++ D + D +
Sbjct: 191 LMDWGFTDTYRQLNPDVDNQFSWFDYRSRGFDDNRGLRIDLILATKALAKQCEDSGIDYE 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 251 LRGIEKPSDHAPVWSTF 267
>gi|229147624|ref|ZP_04275968.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST24]
gi|296505509|ref|YP_003667209.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
thuringiensis BMB171]
gi|228635833|gb|EEK92319.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST24]
gi|296326561|gb|ADH09489.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
thuringiensis BMB171]
Length = 352
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ + G ++ GD+N+ +++ +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKEYMNKHYENGDYVIMGGDWNQLVSNAQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|229175769|ref|ZP_04303275.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus MM3]
gi|228607720|gb|EEK65036.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus MM3]
Length = 337
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ + G ++ GD+N+ ++++ +D + K P+ L+ +
Sbjct: 211 IRKQQVEFLKEYMNKHYENGDYVIMGGDWNQLLSNVQLSDPKFVKERPEWLVELPKDFTD 270
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 271 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 327
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 328 NPVSAVFKLK 337
>gi|60652565|gb|AAX28977.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 249 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|21674945|ref|NP_663010.1| AP Xth family endonuclease [Chlorobium tepidum TLS]
gi|21648175|gb|AAM73352.1| AP (apurinic or apyrimidinic) endonuclease, xth family [Chlorobium
tepidum TLS]
Length = 253
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 34/130 (26%), Gaps = 21/130 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDG 50
LK + + + G ++ GD N + I + +
Sbjct: 127 LKAFIAELLTEGREVILLGDINVALRDIDVHRSQNKPGAIGLRPEERAAIEAHLGLGLLD 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ +K+ K + + + + S K S
Sbjct: 187 IVRELNPDKKDLFTWWPNWK-FARERNLGWRIDCIYLTPALARKVSGVSVDL--DEKSSD 243
Query: 111 HCPLTIEYDF 120
H P++++
Sbjct: 244 HAPVSVKLSL 253
>gi|115353211|ref|YP_775050.1| exodeoxyribonuclease III Xth [Burkholderia ambifaria AMMD]
gi|172062083|ref|YP_001809735.1| exodeoxyribonuclease III Xth [Burkholderia ambifaria MC40-6]
gi|115283199|gb|ABI88716.1| exodeoxyribonuclease III Xth [Burkholderia ambifaria AMMD]
gi|171994600|gb|ACB65519.1| exodeoxyribonuclease III Xth [Burkholderia ambifaria MC40-6]
Length = 257
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 44/145 (30%), Gaps = 31/145 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++K+ ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELKSKREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + + E R ++ + + +
Sbjct: 177 WLTQLFDDVGYVDVFRTLDPRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAGTAKR 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFEK 122
S + K S H PLT++YD++K
Sbjct: 235 TSIF--KDIKFSDHAPLTVDYDYKK 257
>gi|257886665|ref|ZP_05666318.1| AP endonuclease [Enterococcus faecium 1,141,733]
gi|257895240|ref|ZP_05674893.1| AP endonuclease [Enterococcus faecium Com12]
gi|293377228|ref|ZP_06623433.1| exodeoxyribonuclease III [Enterococcus faecium PC4.1]
gi|257822719|gb|EEV49651.1| AP endonuclease [Enterococcus faecium 1,141,733]
gi|257831805|gb|EEV58226.1| AP endonuclease [Enterococcus faecium Com12]
gi|292644089|gb|EFF62194.1| exodeoxyribonuclease III [Enterococcus faecium PC4.1]
Length = 250
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 33/131 (25%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + +K P ++ GD N +I + + +
Sbjct: 124 EAFYNYL-ENLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRLLDNGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +E R S + D D + +
Sbjct: 183 IDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLAPRLADAKIHTDIMG--- 239
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 240 -SDHCPVELDL 249
>gi|332709465|ref|ZP_08429426.1| putative extracellular nuclease [Lyngbya majuscula 3L]
gi|332351724|gb|EGJ31303.1| putative extracellular nuclease [Lyngbya majuscula 3L]
Length = 713
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 8/125 (6%)
Query: 3 SQQGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+QQ + + + D + ++ GDFN L E E
Sbjct: 443 NQQAQIVNDFVDTILTNDPDANVLVLGDFNTFDFEEPLETLKGYHNSVLTNLTETLPEDE 502
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + N +LD+ ++ + + V+ + +D + S H P+ +
Sbjct: 503 RYTFIFEGNSQALDHILVSDHLVDAGAEYDIVHVNSEFAD------QASDHDPILARFTL 556
Query: 121 EKGNV 125
+ +
Sbjct: 557 PEPTI 561
>gi|254804108|ref|YP_003082329.1| putative DNA repair endonuclease [Neisseria meningitidis alpha14]
gi|254667650|emb|CBA03464.1| putative DNA repair endonuclease [Neisseria meningitidis alpha14]
Length = 259
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDVPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVMEYDY 256
>gi|288929660|ref|ZP_06423504.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
gi|288329165|gb|EFC67752.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
Length = 249
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 26/119 (21%), Gaps = 22/119 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
+ P ++ GD N I + + +
Sbjct: 132 NLDKCKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEERQKMTQLLDAGFTDTFRWKYP 191
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
E+ + R K+ D ++ S HCP+ +
Sbjct: 192 EEVTYSWWSYRFKARERNTGWRIDYFLVSNRLQAEVLDAKIHTDILG----SDHCPVEL 246
>gi|319407432|emb|CBI81083.1| exodeoxyribonuclease III [Bartonella sp. 1-1C]
Length = 260
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 17/131 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
+ L A + P ++AGD+N + + +Q + G
Sbjct: 128 MKRLYTHAKSLLAYEEPLILAGDYNVIPTPLDAKNPQEWSNDALFLPQIRQIFQCITHLG 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF-SIVSYDQSDLDTRRS-KL 108
++ +++ + L+ + S + R K
Sbjct: 188 FYDAIRNVTDAPSFSFWDFQANAWKKNNGIRIDHLLLSPEAADQLICAYSQTEVRGYQKP 247
Query: 109 STHCPLTIEYD 119
S H P+ IE +
Sbjct: 248 SDHVPIWIELN 258
>gi|251794788|ref|YP_003009519.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
gi|247542414|gb|ACS99432.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
Length = 258
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 31/127 (24%), Gaps = 23/127 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ P ++ GD N I + + +
Sbjct: 133 KLDEHKPVIVCGDLNVAHQDIDLKNAKSNRGNSGFTDEEREKMTRLLDAGFIDSFRYLYP 192
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ ++ K D + +IV S HCP+ +
Sbjct: 193 DRTDAYTWWSFMPKIRERNVGWRIDYFLASARLAPAIVEAGIDSQILG----SDHCPVVL 248
Query: 117 EYDFEKG 123
D EKG
Sbjct: 249 TLDTEKG 255
>gi|50086482|ref|YP_047992.1| catabolite repression control protein [Acinetobacter sp. ADP1]
gi|49532458|emb|CAG70170.1| catabolite repression control protein [Acinetobacter sp. ADP1]
Length = 285
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 27/136 (19%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------F 42
L + + LK+W D+ ++ GD+N I +
Sbjct: 155 LEKYAQILKQWRDE----NKSIIVCGDYNIVHKRIDIKNWSGNQKSSGCLPHERAWLDHI 210
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ ++ E E R ++ + + +
Sbjct: 211 YDELGYVDTFREVRPEAELYSWWSNRGQARAKNVGW--RIDYHACSPDWK--TRTVNAWV 266
Query: 103 TRRSKLSTHCPLTIEY 118
R S H P+ I+Y
Sbjct: 267 YRDEWYSDHAPVIIDY 282
>gi|18375501|ref|NP_001632.2| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375503|ref|NP_542379.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375505|ref|NP_542380.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|113984|sp|P27695|APEX1_HUMAN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; Short=APE-1; AltName: Full=REF-1;
AltName: Full=Redox factor-1; Contains: RecName:
Full=DNA-(apurinic or apyrimidinic site) lyase,
mitochondrial
gi|13399540|pdb|1E9N|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399541|pdb|1E9N|B Chain B, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399606|pdb|1HD7|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIDINIMIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|19339022|gb|AAL86909.1|AF488551_1 APEX nuclease (multifunctional DNA repair enzyme) [Homo sapiens]
gi|32022|emb|CAA46925.1| AP endonuclease 1 [Homo sapiens]
gi|178747|gb|AAA58372.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|183780|gb|AAA58629.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|254069|gb|AAB22977.1| Ref-1 [Homo sapiens]
gi|13436404|gb|AAH04979.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|28071072|emb|CAD61917.1| unnamed protein product [Homo sapiens]
gi|54697126|gb|AAV38935.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|60655677|gb|AAX32402.1| APEX nuclease 1 [synthetic construct]
gi|61358645|gb|AAX41600.1| APEX nuclease 1 [synthetic construct]
gi|63100763|gb|AAH95428.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|119586867|gb|EAW66463.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586868|gb|EAW66464.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586869|gb|EAW66465.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586870|gb|EAW66466.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586871|gb|EAW66467.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586872|gb|EAW66468.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|158255636|dbj|BAF83789.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 249 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|114047018|ref|YP_737568.1| exonuclease III [Shewanella sp. MR-7]
gi|113888460|gb|ABI42511.1| Exodeoxyribonuclease III [Shewanella sp. MR-7]
Length = 270
Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 28/137 (20%), Gaps = 25/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L I GD N +
Sbjct: 131 QDLMAHLHANHSNDEDIAIIGDINISPIDLDIGIGEVNRKRWLKTGKCSFQPEEREWLKT 190
Query: 43 WQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q + ++ E R+K D + D + ++ D
Sbjct: 191 LQDWGLVDTFRQLHPDRSERYSWFDYRSKGFDDNRGLRIDVILATPSLAARLIESDVDYD 250
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 251 LRGIDKPSDHAPIWSTF 267
>gi|313204713|ref|YP_004043370.1| endonuclease/exonuclease/phosphatase [Paludibacter propionicigenes
WB4]
gi|312444029|gb|ADQ80385.1| Endonuclease/exonuclease/phosphatase [Paludibacter propionicigenes
WB4]
Length = 289
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 28/114 (24%), Gaps = 3/114 (2%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ +++ + I G P + GD N + D + P
Sbjct: 174 ESARLIEQQVKK-IAAGKPVLFLGDLNTAPDETDMYKILHATFDDSREISAKPAIGSVGT 232
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ SD + ++ S H P+ IE
Sbjct: 233 FNNYDVSKMMLPV--SERIDYIFCKKIKVFSYRVISDRFSEKTYPSDHFPVMIE 284
>gi|300934594|ref|ZP_07149850.1| exodeoxyribonuclease III [Corynebacterium resistens DSM 45100]
Length = 270
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 10/119 (8%), Positives = 23/119 (19%), Gaps = 14/119 (11%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTD-----------DFWQKMDPDGLLIRFPQEKE-- 60
+ + GDFN D + Q
Sbjct: 152 EAIEPASDRLCLVGDFNIAPRDEDVWDRSHFNGKTHVTPNERDCLAALEEAGLMQATALI 211
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ + + + + S H P+ ++Y+
Sbjct: 212 QDEYTYWDYQAMRFPKGEGMRIDLQY-ARGITATAARVDRDERKGKGASDHAPVIVDYE 269
>gi|221134651|ref|ZP_03560954.1| exonuclease III [Glaciecola sp. HTCC2999]
Length = 269
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 14/138 (10%), Positives = 25/138 (18%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------------DF 42
L ++ GD N +
Sbjct: 131 RDLTAHLAATHGPDDQVIVMGDINISPTDLDIGIGPDNAKRWLRSGKCSFQPIERDMLAT 190
Query: 43 WQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q + E + R+K +D + D +
Sbjct: 191 LQALGYHDTFRCLTPEKTDRYSWFDYRSKGFVDNRGLRIDVILASTTLLPLCTESEIDYE 250
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 251 LRGIEKPSDHAPIFAVFS 268
>gi|110677459|ref|YP_680466.1| exodeoxyribonuclease III, putative [Roseobacter denitrificans OCh
114]
gi|109453575|gb|ABG29780.1| exodeoxyribonuclease III, putative [Roseobacter denitrificans OCh
114]
Length = 262
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 28/133 (21%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W + ++ GD N D
Sbjct: 133 MRDWFHAQKPEKS--ILVGDLNIAPREDDVWDHKKLLKVVSHTPIEVEHLAQTQDAGGWV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ + E R + D R + + + K
Sbjct: 191 DITRQDIPEGRLYSWWSYR-AADWDAADKGRRLDHVWATSDIAAAGHDSRILRGARGWEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ ++D
Sbjct: 250 PSDHAPVFAQFDL 262
>gi|294629849|ref|ZP_06708409.1| exodeoxyribonuclease III [Streptomyces sp. e14]
gi|292833182|gb|EFF91531.1| exodeoxyribonuclease III [Streptomyces sp. e14]
Length = 267
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 35/134 (26%), Gaps = 22/134 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
LK+ ++ G ++ GD+N + +
Sbjct: 134 LKELRERAAADGREVLVCGDWNIAHQRADLKNWRGNLKNSGFLPEEREWLTQVLTPEAGG 193
Query: 50 --GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
++ + + R ++ + D + V T
Sbjct: 194 YVDVVRALHPDVEGPYSWWSYRGRAFDNDTGWRIDYHVSTPGLAAKAVKGFVERAATHAE 253
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+T+ YD
Sbjct: 254 RWSDHAPVTVVYDL 267
>gi|260425499|ref|ZP_05779479.1| exodeoxyribonuclease III [Citreicella sp. SE45]
gi|260423439|gb|EEX16689.1| exodeoxyribonuclease III [Citreicella sp. SE45]
Length = 262
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 29/133 (21%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W + ++ GD N + + +
Sbjct: 133 MRDWFRAERFGKS--ILVGDLNIAPREDDVWSHKALLKVVSHTPVEVAALAETQEAGNWV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ + E + R D R + + S K
Sbjct: 191 DITRKDIPEGQLYSWWSYR-ARDWDTADKGRRLDHVWATPDIAGAGHSSRILRAARGWEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVLATFDL 262
>gi|269796071|ref|YP_003315526.1| exodeoxyribonuclease III Xth [Sanguibacter keddieii DSM 10542]
gi|269098256|gb|ACZ22692.1| exodeoxyribonuclease III Xth [Sanguibacter keddieii DSM 10542]
Length = 266
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 36/133 (27%), Gaps = 19/133 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMD 47
E + + + +G V+ GD N ++ + ++
Sbjct: 134 EKVDARLRELMDSGRHVVVGGDVNIAHQNVDIKNWKGNLKSAGFLPEERAYLDRWFEAGW 193
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D + R +S + D + + + D+ ++
Sbjct: 194 VDLGRRHGGEGPGPYTWWSNRGQSFANDAGWRIDYQLSTPALAELASNVHVDRADSYEAR 253
Query: 108 LSTHCPLTIEYDF 120
S H PL +Y
Sbjct: 254 WSDHAPLLADYAL 266
>gi|217031877|ref|ZP_03437380.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298735503|ref|YP_003728024.1| exodeoxyribonuclease III [Helicobacter pylori B8]
gi|216946529|gb|EEC25131.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298354688|emb|CBI65560.1| exodeoxyribonuclease III [Helicobacter pylori B8]
Length = 250
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ ++ P ++ GD N N I + + +
Sbjct: 127 KKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|119489711|ref|ZP_01622470.1| hypothetical protein L8106_13340 [Lyngbya sp. PCC 8106]
gi|119454448|gb|EAW35597.1| hypothetical protein L8106_13340 [Lyngbya sp. PCC 8106]
Length = 273
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 42/121 (34%), Gaps = 9/121 (7%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFN---RKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q L +WA ++ +P + GD+N N D + + + + ++
Sbjct: 155 EQARLLNRWAQKQQ---LPMITVGDYNFDWDVKNGDSKRDPGYDLLTENQVWTWVRPQEI 211
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ R + LD+ I + + Y ++D S+ S H P+
Sbjct: 212 IATHCSSRYDTVLDFVFISSQIQPRSASSKIL---YPEADYCPDTSQKSDHRPVQATLSL 268
Query: 121 E 121
Sbjct: 269 P 269
>gi|325265848|ref|ZP_08132534.1| exodeoxyribonuclease III [Kingella denitrificans ATCC 33394]
gi|324982486|gb|EGC18112.1| exodeoxyribonuclease III [Kingella denitrificans ATCC 33394]
Length = 257
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 40/144 (27%), Gaps = 29/144 (20%)
Query: 3 SQQG---EWLKKW---ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK----------- 45
+Q ++L + + +G V+ GD+N +I + +
Sbjct: 117 ERQAYKYKFLDAFYPILAELKASGRDVVVCGDWNIAHQNIDIKNWKGNQKNSGFLPEERA 176
Query: 46 --------MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ E R ++ ++ +
Sbjct: 177 WIGKVIGELGWVDAWRTLYPEVAGYTWWSNRGQAYAKDVGW--RIDYQMVTPQLAQ--AM 232
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFE 121
QS + K S H PL ++Y ++
Sbjct: 233 QSAHVYKDVKFSDHAPLVVDYAYD 256
>gi|121727142|ref|ZP_01680316.1| exodeoxyribonuclease III [Vibrio cholerae V52]
gi|153818870|ref|ZP_01971537.1| exodeoxyribonuclease III [Vibrio cholerae NCTC 8457]
gi|121630520|gb|EAX62912.1| exodeoxyribonuclease III [Vibrio cholerae V52]
gi|126510598|gb|EAZ73192.1| exodeoxyribonuclease III [Vibrio cholerae NCTC 8457]
Length = 171
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 34/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q L + + V+ GD N +
Sbjct: 29 KRQFYRDLMTYLREHRSNSERLVVMGDINISPLDLDIGIGEANRKRWLQTGKCSFQPEER 88
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ Q + GL+ F Q R++ D + D + +
Sbjct: 89 EWLQTLLDWGLVDTFRQLHPDVSDQFSWFDYRSRGFEDNRGLRIDVILATPTLAETCQEA 148
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 149 GIDYELRAIDKPSDHAPIWTTF 170
>gi|161510986|ref|YP_088240.2| exonuclease III [Mannheimia succiniciproducens MBEL55E]
Length = 267
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 30/135 (22%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD-------------------------TDDFW 43
L + + +I GD N + +
Sbjct: 132 LLNYVKNEHNPESNIIIMGDMNISPTDLDIGIGEDSRKRWLRTGKCSFLPEEREWYQRLY 191
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ D P + R+K + + D+ + V +
Sbjct: 192 ECGLEDTFRKLNPWTNDKFSWFDYRSKGFAENRGLRIDHILANSKLAERCVDTGIALDIR 251
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 252 AMEKPSDHAPIWATF 266
>gi|118138505|pdb|2ISI|A Chain A, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138506|pdb|2ISI|B Chain B, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138507|pdb|2ISI|C Chain C, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
Length = 317
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 189 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 247
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 248 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 304
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 305 GSDHCPITLYLAL 317
>gi|56961986|ref|YP_173708.1| hypothetical protein ABC0204 [Bacillus clausii KSM-K16]
gi|56908220|dbj|BAD62747.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 295
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 42/121 (34%), Gaps = 4/121 (3%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ E + + ++ +P ++ GDFN +S+ + + D E++
Sbjct: 179 QKSAELIIEKINE-YDENLPIILTGDFNTTPDSVSHGILTGEGLFEDP---WNYAEEKIN 234
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ N + + ++++ + S +D S H P+ E+ +
Sbjct: 235 EELGTFNGFNDPTGGGTDNKIDWVLTKNIFAESIGINDYRNGEQYPSDHFPVIAEFKLGE 294
Query: 123 G 123
Sbjct: 295 E 295
>gi|269216697|ref|ZP_06160551.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
gi|269129931|gb|EEZ61014.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
Length = 264
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 30/122 (24%), Gaps = 23/122 (18%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDP---DGLLIRFPQE- 58
P ++ GDFN I + + + +
Sbjct: 147 AEPKPVIMCGDFNVAHQEIDLKNPRSNRGNPGFSDEERSSFTSLLDAGFADTFRMLHPDL 206
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + R + + FL+ ++ S S HCP+ ++
Sbjct: 207 EGAYSWWSYRFNARKNNAGW--RIDYFLVSDALRGAIESASIY--DEVMGSDHCPVGLDI 262
Query: 119 DF 120
Sbjct: 263 AL 264
>gi|261840198|gb|ACX99963.1| exodeoxyribonuclease [Helicobacter pylori 52]
Length = 250
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+K+ ++ P ++ GD N N I + + +
Sbjct: 127 RKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFNELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|189184130|ref|YP_001937915.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Ikeda]
gi|189180901|dbj|BAG40681.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Ikeda]
Length = 261
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 14/135 (10%), Positives = 27/135 (20%), Gaps = 21/135 (15%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-------------QKMDPDGLL 52
+++ W ++ GD N + + M
Sbjct: 126 VDFMNAWFLNNKSKKDKIILLGDLNIAPLESDVWSSYQLRNVVSYTDIERKKLMHNITSF 185
Query: 53 IRFPQ-------EKESTCNVIKRNKSS-LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
++ RN D+ I S
Sbjct: 186 DWIDAVRFFSGKHEKLYSWWSYRNVDWSKFDRGRRLDHIWISHPLESKIKSCIIIKDARG 245
Query: 105 RSKLSTHCPLTIEYD 119
S H P+ +E +
Sbjct: 246 WDMPSDHVPVMLEIE 260
>gi|150009697|ref|YP_001304440.1| hypothetical protein BDI_3112 [Parabacteroides distasonis ATCC
8503]
gi|255013008|ref|ZP_05285134.1| hypothetical protein B2_03828 [Bacteroides sp. 2_1_7]
gi|298374104|ref|ZP_06984062.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
gi|149938121|gb|ABR44818.1| conserved hypothetical protein with
endonuclease/exonuclease/phosphatase family domain
[Parabacteroides distasonis ATCC 8503]
gi|298268472|gb|EFI10127.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
Length = 280
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 28/106 (26%), Gaps = 4/106 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+KI P + GDFN +S + D I +
Sbjct: 179 KKIAGDSPAICVGDFNGTPDSEPIQILKSDGLLLDSREISKTPPYGTVGTT----NQFNL 234
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + Y + S H P+ IE +F
Sbjct: 235 NAPMKNRIDYIFVTKGIQVNKYGTLNECQYGHFSSDHFPIMIEAEF 280
>gi|254671628|emb|CBA09333.1| putative endonuclease [Neisseria meningitidis alpha153]
Length = 259
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDVPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVMEYDY 256
>gi|313904223|ref|ZP_07837602.1| exodeoxyribonuclease III Xth [Eubacterium cellulosolvens 6]
gi|313471025|gb|EFR66348.1| exodeoxyribonuclease III Xth [Eubacterium cellulosolvens 6]
Length = 250
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 26/128 (20%), Gaps = 23/128 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + + + P ++ GD N I + + +
Sbjct: 127 RAYLGK-LDEKKPVIVCGDLNVAHEEIDLKNPKTNRKNAGFTDEERGKFTELLDAGFTDS 185
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E R + D I S H
Sbjct: 186 FRYLHPEDVEYSWWSYRFHAREKNAGWRIDYFLTSERVKEKIEQAVIHQEIFG----SDH 241
Query: 112 CPLTIEYD 119
CP+ ++
Sbjct: 242 CPVELDIS 249
>gi|229084175|ref|ZP_04216463.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-44]
gi|228699133|gb|EEL51830.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-44]
Length = 190
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK P V+ GD N S M ++ +
Sbjct: 75 QLAQEVNSFVKGIQKKDANAPVVVVGDMNDFEFSKPLQALKGDVMKD---MLETVSKDNR 131
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + +++ ++S H P+ + D +
Sbjct: 132 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NTNIMKEHGRVSDHDPVLAQIDLK 187
Query: 122 KGN 124
+ +
Sbjct: 188 QAS 190
>gi|167736590|ref|ZP_02409364.1| exodeoxyribonuclease III [Burkholderia pseudomallei 14]
Length = 256
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 43/144 (29%), Gaps = 31/144 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++K ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELKAKREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + + E R ++ + + + +
Sbjct: 177 WLTKLFDDVGYVDVFRTLDPRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAGTAKN 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFE 121
S R K S H PLT++YD++
Sbjct: 235 TSIF--RDIKFSDHAPLTVDYDYK 256
>gi|21221611|ref|NP_627390.1| exodeoxyribonuclease [Streptomyces coelicolor A3(2)]
gi|6138859|emb|CAB59670.1| putative exodeoxyribonuclease (EC 3.1.11.2) (putative secreted
protein) [Streptomyces coelicolor A3(2)]
Length = 274
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 36/133 (27%), Gaps = 22/133 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
LK+ ++ G V+ GD+N + K +
Sbjct: 141 LKELRERAAAQGREVVVCGDWNIAHREADLKNWRANKKNSGFLPEEREWLGRVLDPAEGG 200
Query: 50 --GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
++ + + R ++ + D + V T
Sbjct: 201 YVDVVRALHPDVEGPYSWWSYRGRAFGNDAGWRIDYHVSTPGLAAKAVKGYVERAATHAE 260
Query: 107 KLSTHCPLTIEYD 119
+ S H P+T+ YD
Sbjct: 261 RWSDHAPVTVVYD 273
>gi|257897862|ref|ZP_05677515.1| AP endonuclease [Enterococcus faecium Com15]
gi|257835774|gb|EEV60848.1| AP endonuclease [Enterococcus faecium Com15]
Length = 250
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 33/131 (25%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + +K P ++ GD N +I + + +
Sbjct: 124 EAFYNYL-ENLKKQKPVIVCGDLNVAHQTIDLKNWKTNQKNAGFTPEERAALSRLLDNGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +E R S + D D + +
Sbjct: 183 IDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLAPRLADAKIHTDIMG--- 239
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 240 -SDHCPVELDL 249
>gi|254780031|ref|YP_003058138.1| exodeoxyribonuclease III [Helicobacter pylori B38]
gi|254001944|emb|CAX30201.1| Putative exodeoxyribonuclease [Helicobacter pylori B38]
Length = 250
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ ++ P ++ GD N N I + + +
Sbjct: 127 KKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFNELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|54022898|ref|YP_117140.1| putative exonuclease [Nocardia farcinica IFM 10152]
gi|54014406|dbj|BAD55776.1| putative exonuclease [Nocardia farcinica IFM 10152]
Length = 259
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 12/128 (9%), Positives = 31/128 (24%), Gaps = 22/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
+ + FV+ GD+N + + ++
Sbjct: 135 AYLKARTGD---FVVCGDWNIAHTERDLKNWKGNRKSAGFLPEERAWIDELLAAGYVDVV 191
Query: 53 IRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ R ++ + D + + + + S H
Sbjct: 192 RALHPDVDGPYSWWSYRGRAFDNDSGWRIDYHLARGELAGRAKQAVVERAPSYDQRWSDH 251
Query: 112 CPLTIEYD 119
P+T++Y
Sbjct: 252 APVTVQYR 259
>gi|41410014|ref|NP_962850.1| hypothetical protein MAP3916c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41398847|gb|AAS06466.1| XthA [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 272
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 10/131 (7%), Positives = 25/131 (19%), Gaps = 20/131 (15%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIR 54
W + +AGD+N + +
Sbjct: 141 AAWLRE--DPAAQIALAGDWNIAPQDDDVWSMEFFAGATHVSEPERRAFNAILDAQFADL 198
Query: 55 ---FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F + D + + + + S H
Sbjct: 199 VRPFAPGPGVYTYWDYTALRFPKRQGMRIDFILGSPALARRVTHAQIDREERKGKGASDH 258
Query: 112 CPLTIEYDFEK 122
P+ ++ ++
Sbjct: 259 APVLVDVSRDE 269
>gi|290956218|ref|YP_003487400.1| hypothetical protein SCAB_17031 [Streptomyces scabiei 87.22]
gi|260645744|emb|CBG68835.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 305
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 24/118 (20%), Gaps = 6/118 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + +P V+ GDFN + D D +
Sbjct: 193 DRAAALIVRRIAG-FDRSLPLVVTGDFNVAAHRNPVYDTMLDAGLVDTWDAAAERTDLYA 251
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R L + + + S H P+
Sbjct: 252 TFHGYR-----PLTPGGDRIDWILTTPGVTAHRAAVNTFASNGQYPSDHLPVQATLTL 304
>gi|256831938|ref|YP_003160665.1| exodeoxyribonuclease III Xth [Jonesia denitrificans DSM 20603]
gi|256685469|gb|ACV08362.1| exodeoxyribonuclease III Xth [Jonesia denitrificans DSM 20603]
Length = 287
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 32/132 (24%), Gaps = 19/132 (14%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLL 52
+ ++AGD N + + ++ D
Sbjct: 155 RLAELNTPDSLALVAGDINIAHTNNDIKNWRGNKKSAGFLPEERAYLDQWFDAGWHDTHR 214
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+++ R ++ + D + + ++ S H
Sbjct: 215 DLVGEQEGPYTWWSNRGQAFDNDSGWRIDYHLTTPELFTHASYPRVDRAPSYDTRWSDHA 274
Query: 113 PLTIEYDFEKGN 124
PL I+Y +
Sbjct: 275 PLVIDYSLTPAS 286
>gi|207727621|ref|YP_002256015.1| exodeoxyribonuclease III protein [Ralstonia solanacearum MolK2]
gi|206590860|emb|CAQ56472.1| exodeoxyribonuclease III protein [Ralstonia solanacearum MolK2]
Length = 261
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 29/142 (20%)
Query: 3 SQQGEW------LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D + + G V+ GD N I +
Sbjct: 119 RQQAKYRFMDLFMQHLVDLRHEKGREIVLCGDVNIVHKEIDIKNWKGNQKNSGCLPEERA 178
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + E R ++ + + +
Sbjct: 179 WLTRLFDEVGYVDVFRTLDTRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGIAATARR 236
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
S R K S H PLT++YD
Sbjct: 237 TSIF--RDIKFSDHAPLTVDYD 256
>gi|121635738|ref|YP_975983.1| putative nuclease [Neisseria meningitidis FAM18]
gi|120867444|emb|CAM11216.1| putative nuclease [Neisseria meningitidis FAM18]
gi|254671914|emb|CBA04230.1| putative endonuclease [Neisseria meningitidis alpha275]
gi|308390182|gb|ADO32502.1| exodeoxyribonuclease [Neisseria meningitidis alpha710]
gi|325131323|gb|EGC54034.1| exodeoxyribonuclease III [Neisseria meningitidis M6190]
gi|325133258|gb|EGC55924.1| exodeoxyribonuclease III [Neisseria meningitidis M13399]
gi|325137352|gb|EGC59940.1| exodeoxyribonuclease III [Neisseria meningitidis ES14902]
gi|325141356|gb|EGC63839.1| exodeoxyribonuclease III [Neisseria meningitidis 961-5945]
gi|325143494|gb|EGC65815.1| exodeoxyribonuclease III [Neisseria meningitidis M01-240013]
gi|325199171|gb|ADY94627.1| exodeoxyribonuclease III [Neisseria meningitidis G2136]
gi|325206984|gb|ADZ02437.1| exodeoxyribonuclease III [Neisseria meningitidis M04-240196]
Length = 259
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 194 TLYPDVPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVMEYDY 256
>gi|170703197|ref|ZP_02894004.1| exodeoxyribonuclease III Xth [Burkholderia ambifaria IOP40-10]
gi|170131894|gb|EDT00415.1| exodeoxyribonuclease III Xth [Burkholderia ambifaria IOP40-10]
Length = 257
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 44/145 (30%), Gaps = 31/145 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++K+ ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELKSKREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + + E R ++ + + +
Sbjct: 177 WLTQLFDDVGYVDVFRTLDPRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAGTAKR 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFEK 122
S + K S H PLT++YD++K
Sbjct: 235 TSIF--KDIKFSDHAPLTVDYDYKK 257
>gi|189183086|ref|YP_001936871.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Ikeda]
gi|189183300|ref|YP_001937085.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Ikeda]
gi|189179857|dbj|BAG39637.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Ikeda]
gi|189180071|dbj|BAG39851.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Ikeda]
Length = 261
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 14/135 (10%), Positives = 27/135 (20%), Gaps = 21/135 (15%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-------------QKMDPDGLL 52
+++ W ++ GD N + + M
Sbjct: 126 VDFMNAWFLNNKSKKDKIILLGDLNIAPLESDVWSSYQLRNVVSHTDIERKKLMHNITSF 185
Query: 53 IRFPQ-------EKESTCNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
++ RN D+ I S
Sbjct: 186 DWIDAVRFFSGKHEKLYSWWSYRNVDWSKSDRGRRLDHIWISHHLESKIKSCIIIKDARG 245
Query: 105 RSKLSTHCPLTIEYD 119
S H P+ +E +
Sbjct: 246 WDMPSDHVPVMLEIE 260
>gi|172062743|ref|YP_001810394.1| endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
MC40-6]
gi|171995260|gb|ACB66178.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
MC40-6]
Length = 600
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 34/139 (24%), Gaps = 22/139 (15%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ E + W ++ GD N + L+
Sbjct: 463 RAAERVAAWLATSPTGAAADGVLLIGDLNSYAKEDPLRALESRGY---ANLVARFAGNAG 519
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTR 104
V + +LD+ + + ++ D+
Sbjct: 520 YTYVFRGEAGNLDHALATPPLAARVKAVHAWHINADEPIALQAVPDYKTPAQQAAYYAPD 579
Query: 105 RSKLSTHCPLTIEYDFEKG 123
+ S H P+ I+ E+G
Sbjct: 580 AYRSSDHDPVVIDLALEEG 598
>gi|163941424|ref|YP_001646308.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|229012920|ref|ZP_04170085.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|163863621|gb|ABY44680.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|228748174|gb|EEL98034.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
Length = 252
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 29/130 (22%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ V GD N I + + +P
Sbjct: 128 RAYIK-RLNEKKSVVFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTRTLEEGFVDT 186
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + R + D I + S
Sbjct: 187 YRYLYPDQEGAYSWWSYRMGARAKNIGWRLDYFVVSERMKDKITEAKINSEIMG----SD 242
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 243 HCPVELHINF 252
>gi|300790754|ref|YP_003771045.1| endonuclease/exonuclease/phosphatase family protein [Amycolatopsis
mediterranei U32]
gi|299800268|gb|ADJ50643.1| putative endonuclease/exonuclease/phosphatase family protein
[Amycolatopsis mediterranei U32]
Length = 821
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 36/125 (28%), Gaps = 14/125 (11%)
Query: 3 SQQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++Q L+ + D + V+AGD N S + D + E+
Sbjct: 689 AKQATVLRGFVDSLLAADRNANIVVAGDLNDYPFSPAVQTLTAGGVLKDLIASVPEAER- 747
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYD 119
V + + L + V YD + S H P I +
Sbjct: 748 -YSYVF---------EGQSQVLDHILASRAPRGVDYDVVHINAEFADQASDHDPQVIRFR 797
Query: 120 FEKGN 124
GN
Sbjct: 798 PGAGN 802
>gi|52307155|gb|AAU37655.1| XthA protein [Mannheimia succiniciproducens MBEL55E]
Length = 275
Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 30/135 (22%), Gaps = 25/135 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD-------------------------TDDFW 43
L + + +I GD N + +
Sbjct: 140 LLNYVKNEHNPESNIIIMGDMNISPTDLDIGIGEDSRKRWLRTGKCSFLPEEREWYQRLY 199
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ D P + R+K + + D+ + V +
Sbjct: 200 ECGLEDTFRKLNPWTNDKFSWFDYRSKGFAENRGLRIDHILANSKLAERCVDTGIALDIR 259
Query: 104 RRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 260 AMEKPSDHAPIWATF 274
>gi|317482487|ref|ZP_07941503.1| exodeoxyribonuclease III [Bifidobacterium sp. 12_1_47BFAA]
gi|316916039|gb|EFV37445.1| exodeoxyribonuclease III [Bifidobacterium sp. 12_1_47BFAA]
Length = 286
Score = 60.6 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 24/139 (17%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK--------------- 45
ML + L+ + G V+ GDFN + + +
Sbjct: 151 MLKR-MGALRD---EAAHGGKQAVLCGDFNIAHTPLDIKNAKANEKHAGFLPEERAYVDK 206
Query: 46 MDPDGLLIRFPQE-----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ + + + +R ++ + D + + + + +
Sbjct: 207 WLDEYEFVDVMRSLAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETARGFVIDK 266
Query: 101 LDTRRSKLSTHCPLTIEYD 119
T + S H PLTI Y+
Sbjct: 267 APTYDKRWSDHAPLTITYE 285
>gi|223935760|ref|ZP_03627676.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
gi|223895768|gb|EEF62213.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
Length = 250
Score = 60.6 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 29/136 (21%), Gaps = 25/136 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------ 49
+Q +W + +K++ P + GD N I + +
Sbjct: 120 RQ-QWDCDFLSYLKKLEKKKPVIFCGDLNVAHTEIDLANPKANVKNHGFTPEERAGFSTV 178
Query: 50 ------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
F + + D +
Sbjct: 179 IKAGFIDTFREFEKGGGHYSWWSPMGGARSRNVGWRIDYFLISSALRPRLKRAFIQPNIP 238
Query: 104 RRSKLSTHCPLTIEYD 119
S HCP+ IE
Sbjct: 239 G----SDHCPVGIELS 250
>gi|238028924|ref|YP_002913155.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
glumae BGR1]
gi|237878118|gb|ACR30451.1| Endonuclease/exonuclease/phosphatase family protein [Burkholderia
glumae BGR1]
Length = 256
Score = 60.6 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 41/142 (28%), Gaps = 27/142 (19%)
Query: 3 SQQG--EWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----------------- 41
QQ ++ ++ ++K ++ GD N I +
Sbjct: 119 RQQAKYRFMNEFMPHLAELKATREVIVCGDVNIVHKEIDIRNWKSNQKNSGCLPEERAWL 178
Query: 42 --FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
+ ++ + + R ++ + + + S
Sbjct: 179 TKLFDEVGYVDVFRTLDPRPDQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAGTAKQTS 236
Query: 100 DLDTRRSKLSTHCPLTIEYDFE 121
R K S H PLT++YD++
Sbjct: 237 IF--RDIKFSDHAPLTVDYDYQ 256
>gi|254447686|ref|ZP_05061152.1| exodeoxyribonuclease III [gamma proteobacterium HTCC5015]
gi|198263029|gb|EDY87308.1| exodeoxyribonuclease III [gamma proteobacterium HTCC5015]
Length = 256
Score = 60.6 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLI 53
+ + G +++ GD+N + + M
Sbjct: 134 LKAQGEDGRRYILCGDWNIAHTKADIKNWRGNQKNSGFLPEERAWLDTLFDDMQWVDAFR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
QE+ S R ++ + ++ + + + S H P
Sbjct: 194 EIEQEEHSYTWWSNRGQAWANNTGW--RIDYHIVSPNLKGTVKSTDIYT--QERFSDHAP 249
Query: 114 LTIEYDF 120
LTI+YDF
Sbjct: 250 LTIDYDF 256
>gi|157964331|ref|YP_001499155.1| exodeoxyribonuclease III [Rickettsia massiliae MTU5]
gi|157844107|gb|ABV84608.1| Exodeoxyribonuclease III [Rickettsia massiliae MTU5]
Length = 292
Score = 60.6 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 32/138 (23%), Gaps = 23/138 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT------------DDFWQKMDP----- 48
+++W +I GD N + D +
Sbjct: 147 VRLMQEWLTTNRTKNDKMIIVGDLNIAPHEHDVWSSKQLRNVISHTDIERSLLVELQNVL 206
Query: 49 ---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD--T 103
D + + RN R + + ++ + L
Sbjct: 207 GFIDSSRHFVSLDTKFYTWWSYRNIDWKK-SNKGRRLDHIWVSDNLKDALFSMHLLPEAR 265
Query: 104 RRSKLSTHCPLTIEYDFE 121
S S H P + ++ +
Sbjct: 266 DWSPPSDHVPYFVTFNLQ 283
>gi|330506670|ref|YP_004383098.1| exodeoxyribonuclease III [Methanosaeta concilii GP-6]
gi|328927478|gb|AEB67280.1| exodeoxyribonuclease III [Methanosaeta concilii GP-6]
Length = 257
Score = 60.6 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 29/128 (22%), Gaps = 22/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
D+ + G VI GD N I +
Sbjct: 134 DLMDRLVAEGRDIVICGDVNTAHKEIDLARPKPNEKISGFLPEERAWIDRLIEHGFLDTF 193
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
F E E + ++ F + +S S HC
Sbjct: 194 RLFHPEGEKYSFWDMKTRARERNVGW--RIDYFFVSLGMR--DRVKSAFILDDVYGSDHC 249
Query: 113 PLTIEYDF 120
P+ IE +
Sbjct: 250 PVGIEIEL 257
>gi|307324263|ref|ZP_07603471.1| exodeoxyribonuclease III Xth [Streptomyces violaceusniger Tu 4113]
gi|306889994|gb|EFN20972.1| exodeoxyribonuclease III Xth [Streptomyces violaceusniger Tu 4113]
Length = 282
Score = 60.6 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 35/128 (27%), Gaps = 20/128 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDPD 49
LK+ ++ G ++AGD+N + +++
Sbjct: 149 LKELRERAAAGGREALVAGDWNIAHQEADLKNWKANQKKSGFLPEERAWLTSVFEEAGYV 208
Query: 50 GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + R ++ + D + + V +
Sbjct: 209 DVVRALHPDVAGPYSWWSYRGRAFDNDAGWRIDYQIATPGLAGRAVKAVVERAPAYDQRW 268
Query: 109 STHCPLTI 116
S H P+T+
Sbjct: 269 SDHAPVTV 276
>gi|256394880|ref|YP_003116444.1| exodeoxyribonuclease III Xth [Catenulispora acidiphila DSM 44928]
gi|256361106|gb|ACU74603.1| exodeoxyribonuclease III Xth [Catenulispora acidiphila DSM 44928]
Length = 294
Score = 60.6 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 20/133 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + + +TG +I GD+N + + +
Sbjct: 136 LSALSTEAAQTGRAILICGDWNIAHDKADIKNWRANQKSSGFLPEERQWLTSVLTEAGYA 195
Query: 50 GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R K+ + D + + + S T +
Sbjct: 196 DVVRNLHPGVDGPYSWWSFRGKAFDNDTGWRIDYQMASANLAALATSAKVERAATYAERW 255
Query: 109 STHCPLTIEYDFE 121
S H P+T YD++
Sbjct: 256 SDHAPVTCAYDWD 268
>gi|15888787|ref|NP_354468.1| hypothetical protein Atu1461 [Agrobacterium tumefaciens str. C58]
gi|15156541|gb|AAK87253.1| hypothetical protein Atu1461 [Agrobacterium tumefaciens str. C58]
Length = 269
Score = 60.6 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 16/116 (13%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + L ++ + G ++ GDFN +S + ++ L+ +
Sbjct: 170 HQAKRLVQFVKNIAEDGDRVIVCGDFNVLPDSR-----TFAVLNELDLVELVTTRGFTDT 224
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
K + L++ + + +D +S HCPL +E+
Sbjct: 225 RTSHYAKPNR-------YADYLLVNPAVKVSQFDVVRQPE----VSDHCPLLLEFS 269
>gi|219478|dbj|BAA14381.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
Length = 318
Score = 60.6 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 249 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 305
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 306 GSDHCPITLYLAL 318
>gi|167835000|ref|ZP_02461883.1| exodeoxyribonuclease III [Burkholderia thailandensis MSMB43]
Length = 256
Score = 60.6 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 31/144 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++K ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELKAKREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + Q E R ++ + +
Sbjct: 177 WLTKLFDEVGYVDVFRTLDQRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAGT--A 232
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFE 121
+S R K S H PLT++YD++
Sbjct: 233 KSTAIFRDVKFSDHAPLTVDYDYK 256
>gi|149203971|ref|ZP_01880939.1| exodeoxyribonuclease III [Roseovarius sp. TM1035]
gi|149142413|gb|EDM30458.1| exodeoxyribonuclease III [Roseovarius sp. TM1035]
Length = 262
Score = 60.6 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 26/133 (19%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W ++ GD N +
Sbjct: 133 MRDWF--HDSRPEKAILVGDLNIAPREDDVWNHKQLLKIVSHTPVEVDHLSAVMAAGGWQ 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ E + R + D R + + S +
Sbjct: 191 DVTRADIPEGQLYSWWSYR-AADWDAADKGRRLDHVWATGDIATSAHSSRILRGARGWEQ 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFATFDL 262
>gi|15612480|ref|NP_224133.1| exodeoxyribonuclease III [Helicobacter pylori J99]
gi|4156036|gb|AAD06994.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
Length = 250
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ ++ P ++ GD N N I + + +
Sbjct: 127 KKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|15966954|ref|NP_387307.1| putative exodeoxyribonuclease III protein [Sinorhizobium meliloti
1021]
gi|307301727|ref|ZP_07581486.1| exodeoxyribonuclease III [Sinorhizobium meliloti BL225C]
gi|307316249|ref|ZP_07595693.1| exodeoxyribonuclease III [Sinorhizobium meliloti AK83]
gi|15076227|emb|CAC47780.1| Putative exodeoxyribonuclease III [Sinorhizobium meliloti 1021]
gi|306898089|gb|EFN28831.1| exodeoxyribonuclease III [Sinorhizobium meliloti AK83]
gi|306903425|gb|EFN34014.1| exodeoxyribonuclease III [Sinorhizobium meliloti BL225C]
Length = 268
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 31/131 (23%), Gaps = 21/131 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDG 50
K + + G+ ++ GD N D
Sbjct: 138 KLLHAEAEAGVSSILVGDLNIAPLEHDVWSHKQLLKIVSHTPVETEGLVSVMTGGAWVDL 197
Query: 51 LLIRFPQEKESTCNVIKRNKSS-LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ P ++ R K D+ D + +V + + S
Sbjct: 198 MRRHAPPPEKLYTWWSYRAKDWTAADRGRRLDHIWSSADLASQLVRVEILKEARGWERPS 257
Query: 110 THCPLTIEYDF 120
H P+ ++
Sbjct: 258 DHVPVIAHFEL 268
>gi|163942794|ref|YP_001647678.1| endonuclease/exonuclease/phosphatase [Bacillus weihenstephanensis
KBAB4]
gi|229014262|ref|ZP_04171382.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides DSM 2048]
gi|229135910|ref|ZP_04264673.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST196]
gi|163864991|gb|ABY46050.1| Endonuclease/exonuclease/phosphatase [Bacillus weihenstephanensis
KBAB4]
gi|228647552|gb|EEL03624.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST196]
gi|228747039|gb|EEL96922.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides DSM 2048]
Length = 352
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G ++ GD+N+ I++ +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKEYMNKHYKNGDYVIMGGDWNQLISNAQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|293557096|ref|ZP_06675652.1| exodeoxyribonuclease III [Enterococcus faecium E1039]
gi|293567361|ref|ZP_06678711.1| exodeoxyribonuclease III [Enterococcus faecium E1071]
gi|291589963|gb|EFF21761.1| exodeoxyribonuclease III [Enterococcus faecium E1071]
gi|291600740|gb|EFF31036.1| exodeoxyribonuclease III [Enterococcus faecium E1039]
Length = 250
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 31/131 (23%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + +K P ++ GD N I + + +
Sbjct: 124 EAFYNYL-ENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +E R S + D D +
Sbjct: 183 IDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPRLADAKIHTDIMG--- 239
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 240 -SDHCPVELDL 249
>gi|219884049|gb|ACL52399.1| unknown [Zea mays]
Length = 493
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 29/131 (22%), Gaps = 24/131 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + + ++ P ++ GD N I D +
Sbjct: 368 LGNYMKE-LEKSKPVILTGDLNCAHQEIDIHDPAGDRRSAGFTNEERESFGTNFLSKGFV 426
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + R+ + FL+ S + S
Sbjct: 427 DTFRKQHPNVVAYSYWGYRHNARKTNKGW--RLDYFLVSESITEK--VHDSYILPDISAS 482
Query: 110 THCPLTIEYDF 120
H PL +
Sbjct: 483 DHSPLGLVLKL 493
>gi|308070428|ref|YP_003872033.1| exodeoxyribonuclease [Paenibacillus polymyxa E681]
gi|305859707|gb|ADM71495.1| Exodeoxyribonuclease [Paenibacillus polymyxa E681]
Length = 254
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 30/132 (22%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + Q++ P ++ GD N I + +
Sbjct: 124 DRFRSYL-QQLDALKPVIVCGDLNVAHQEIDLKNAKANYGNAGFTPEERERMSLLLDAGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ K D ++ T
Sbjct: 183 IDTFRTFYPDRTDVYSWWSYMPKVRERNIGWRIDYFLVSERLRPLLMDASIDCHITG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ ++
Sbjct: 240 -SDHCPVILDLQ 250
>gi|254500351|ref|ZP_05112502.1| exodeoxyribonuclease III [Labrenzia alexandrii DFL-11]
gi|222436422|gb|EEE43101.1| exodeoxyribonuclease III [Labrenzia alexandrii DFL-11]
Length = 269
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 34/132 (25%), Gaps = 22/132 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--------------------QKMDP 48
+++W Q +T P V+ GD N
Sbjct: 138 MQEWL-QGAETAKPAVLVGDLNVAPYEHDVWSHKKLLKVVSHTPIETELFETVRETGGWL 196
Query: 49 DGLLIRFPQEKESTCNVIKRNKSS-LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D + P E++ R K D+ S I S + K
Sbjct: 197 DAMRQFTPMEEKLYTWWSYRAKDWSAADKGRRLDHVWVSEPASNHIKSTEVLRDARGWEK 256
Query: 108 LSTHCPLTIEYD 119
S H P+ ++
Sbjct: 257 PSDHAPVVAVFE 268
>gi|308185296|ref|YP_003929429.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|308061216|gb|ADO03112.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
Length = 250
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
KK+ ++ P ++ GD N N I + + +
Sbjct: 127 KKFLKA-LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +++ ++ D + + S
Sbjct: 186 FRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALI----YKDILGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|240850841|ref|YP_002972241.1| exodeoxyribonuclease III [Bartonella grahamii as4aup]
gi|240267964|gb|ACS51552.1| exodeoxyribonuclease III [Bartonella grahamii as4aup]
Length = 260
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 17/133 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
E L A + P ++AGD+N + +Q++ G
Sbjct: 128 MERLYTHAKSLLAYEEPLILAGDYNVIPAPLDAKKPQEWYQDALFLQETRKVFQRILNLG 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS-FSIVSYDQSDLDTRRS-KL 108
L ++ ++ + L+ + S + R K
Sbjct: 188 LYDAIRNVTDTPSFSFWDFQAGAWPKNNGIRIDHLLLSPEAVDQLICAHSQTEVRGYQKP 247
Query: 109 STHCPLTIEYDFE 121
S H P+ I +
Sbjct: 248 SDHVPVWIHLNIN 260
>gi|229824704|ref|ZP_04450773.1| hypothetical protein GCWU000182_00052 [Abiotrophia defectiva ATCC
49176]
gi|229791033|gb|EEP27147.1| hypothetical protein GCWU000182_00052 [Abiotrophia defectiva ATCC
49176]
Length = 250
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 34/129 (26%), Gaps = 24/129 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ +K P ++ GD N I + + +
Sbjct: 127 RAYLNK-LKESKPVILCGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKMTELLDAGYIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F E + R K+ D D + S
Sbjct: 186 FRFFYPELENVYSWWSYRFKAREKNTGWRIDYFITSDDFKDRLKDAKIHSEILG----SD 241
Query: 111 HCPLTIEYD 119
HCP+ +++D
Sbjct: 242 HCPVELDFD 250
>gi|226529129|ref|NP_001146906.1| LOC100280514 [Zea mays]
gi|195604980|gb|ACG24320.1| apurinic endonuclease-redox protein [Zea mays]
Length = 510
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 29/131 (22%), Gaps = 24/131 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + + ++ P ++ GD N I D +
Sbjct: 385 LGNYMKE-LEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTNEERESFGTNFLSKGFV 443
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + R+ + FL+ S + S
Sbjct: 444 DTFRKQHPNVVAYSYWGYRHNARKTNKGW--RLDYFLVSESIAEK--VHDSYILPDISAS 499
Query: 110 THCPLTIEYDF 120
H PL +
Sbjct: 500 DHSPLGLVLKL 510
>gi|195604738|gb|ACG24199.1| apurinic endonuclease-redox protein [Zea mays]
Length = 505
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 29/131 (22%), Gaps = 24/131 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + + ++ P ++ GD N I D +
Sbjct: 380 LGNYMKE-LEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTNEERESFGTNFLSKGFV 438
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + R+ + FL+ S + S
Sbjct: 439 DTFRKQHPNVVAYSYWGYRHNARKTNKGW--RLDYFLVSESIAEK--VHDSYILPDISAS 494
Query: 110 THCPLTIEYDF 120
H PL +
Sbjct: 495 DHSPLGLVLKL 505
>gi|149193831|ref|ZP_01870929.1| exodeoxyribonuclease III (xthA) [Caminibacter mediatlanticus TB-2]
gi|149135784|gb|EDM24262.1| exodeoxyribonuclease III (xthA) [Caminibacter mediatlanticus TB-2]
Length = 252
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 20/133 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
+ L +W + +I GDFN S+ D+ + +
Sbjct: 119 DKLFEWLKRFDLNKDKVLICGDFNISHTSLDVWDEEIWEGEVTHLPEERAILSKFLDIGF 178
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK- 107
++ ++++ R + + D D R+ K
Sbjct: 179 IDIIREVYKDEKVFTFYDYRGAAVYKNEGLRLDYILVSKPLFSKFKKVDILTSIRRKRKP 238
Query: 108 -LSTHCPLTIEYD 119
S H P+ E+D
Sbjct: 239 TPSDHVPIIAEFD 251
>gi|120401745|ref|YP_951574.1| exodeoxyribonuclease III Xth [Mycobacterium vanbaalenii PYR-1]
gi|119954563|gb|ABM11568.1| Exodeoxyribonuclease III [Mycobacterium vanbaalenii PYR-1]
Length = 272
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 15/136 (11%), Positives = 34/136 (25%), Gaps = 25/136 (18%)
Query: 8 WLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
L+ A +++ P + GD+N D + + G
Sbjct: 135 ALRDTASSWLESNPSAPIALVGDWNIAPIDDDVWDISLFQDSTHVTEPERAAFNAVVDAG 194
Query: 51 LLIR---FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + D + +V + + + + K
Sbjct: 195 FTDVVRPFTPGPGTFTYWDYTQLRFPKNRGMRIDFILGSPALAERVVHAEIARDERKTGK 254
Query: 108 -----LSTHCPLTIEY 118
S H P+ ++
Sbjct: 255 NRVGSPSDHAPVVVDL 270
>gi|88854566|ref|ZP_01129233.1| hypothetical protein A20C1_10119 [marine actinobacterium PHSC20C1]
gi|88816374|gb|EAR26229.1| hypothetical protein A20C1_10119 [marine actinobacterium PHSC20C1]
Length = 302
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 7/120 (5%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + L+ T P ++ GDFN ++ + + D +E
Sbjct: 189 RSADALRNIVQ---ATPHPTIMTGDFNTDADTHPYDELTGHGLLVDTW----NTAEERLT 241
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
V + + L + V + S H P+ F +
Sbjct: 242 QVWGTFPNYGPPKHDRKRIDWILATPGVTAVRAGINVTRYAGGWPSDHAPVQAVVRFAEA 301
>gi|69245045|ref|ZP_00603203.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium DO]
gi|314939354|ref|ZP_07846596.1| exodeoxyribonuclease III [Enterococcus faecium TX0133a04]
gi|314944126|ref|ZP_07850782.1| exodeoxyribonuclease III [Enterococcus faecium TX0133C]
gi|314949042|ref|ZP_07852404.1| exodeoxyribonuclease III [Enterococcus faecium TX0082]
gi|314953542|ref|ZP_07856453.1| exodeoxyribonuclease III [Enterococcus faecium TX0133A]
gi|314994499|ref|ZP_07859775.1| exodeoxyribonuclease III [Enterococcus faecium TX0133B]
gi|314998115|ref|ZP_07863002.1| exodeoxyribonuclease III [Enterococcus faecium TX0133a01]
gi|68196046|gb|EAN10478.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium DO]
gi|313587883|gb|EFR66728.1| exodeoxyribonuclease III [Enterococcus faecium TX0133a01]
gi|313591110|gb|EFR69955.1| exodeoxyribonuclease III [Enterococcus faecium TX0133B]
gi|313594421|gb|EFR73266.1| exodeoxyribonuclease III [Enterococcus faecium TX0133A]
gi|313597294|gb|EFR76139.1| exodeoxyribonuclease III [Enterococcus faecium TX0133C]
gi|313641358|gb|EFS05938.1| exodeoxyribonuclease III [Enterococcus faecium TX0133a04]
gi|313644519|gb|EFS09099.1| exodeoxyribonuclease III [Enterococcus faecium TX0082]
Length = 269
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 31/131 (23%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + +K P ++ GD N I + + +
Sbjct: 143 EAFYNYL-ENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNGF 201
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +E R S + D D +
Sbjct: 202 IDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPGLADAKIHTDIMG--- 258
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 259 -SDHCPVELDL 268
>gi|258648040|ref|ZP_05735509.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
gi|260851895|gb|EEX71764.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
Length = 250
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 29/120 (24%), Gaps = 23/120 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ P ++ GD N I + + + F
Sbjct: 132 KLDAHKPVIVCGDMNVAHQEIDLKNPKTNRRNAGFTDEEREKMTQLLSNGFIDTFRYFHP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + R ++ D +V + + S HCP+ +
Sbjct: 192 DLTGAYSWWSYRFRAREKNTGWRIDYFLVSERLKPRLVEANIHNDIMG----SDHCPVEL 247
>gi|332669652|ref|YP_004452660.1| exodeoxyribonuclease III Xth [Cellulomonas fimi ATCC 484]
gi|332338690|gb|AEE45273.1| exodeoxyribonuclease III Xth [Cellulomonas fimi ATCC 484]
Length = 277
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 34/132 (25%), Gaps = 20/132 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-----------QKMDPDGLLIRFPQ 57
+ + G V+AGD N + + +
Sbjct: 146 VTARLGDLSQAGGYAVVAGDLNIAHREADIKNWKGNLRSAGFLPQERAYLDRWFDDLSWR 205
Query: 58 E---------KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ R ++ + D + D + + V+ T +
Sbjct: 206 DLGRELGGEGPGPFTWWSWRGQAFDNDSGWRIDYQLATPDLADAAVAATVDRAPTYAERF 265
Query: 109 STHCPLTIEYDF 120
S H PL +EYD
Sbjct: 266 SDHAPLVVEYDL 277
>gi|310287159|ref|YP_003938417.1| Exodeoxyribonuclease III [Bifidobacterium bifidum S17]
gi|309251095|gb|ADO52843.1| Exodeoxyribonuclease III [Bifidobacterium bifidum S17]
Length = 285
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 20/126 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI-------------------- 53
D+ + G V+ GDFN + + L
Sbjct: 159 DEASRGGRQAVLCGDFNIAHTPLDIKNAKANIKHAGFLPAERAYIDRWLGEYEFVDVIRS 218
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ +R ++ + D + + + + + + ++ S H P
Sbjct: 219 LAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETARGFVIDKAPSYDARWSDHAP 278
Query: 114 LTIEYD 119
LT+ YD
Sbjct: 279 LTVTYD 284
>gi|295704797|ref|YP_003597872.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
gi|294802456|gb|ADF39522.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
Length = 253
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 23/124 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLIRF 55
+K+ + ++ GD N I + D +
Sbjct: 130 KKLNSRKAVILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKMTTLLASGFLDTFRYLY 189
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
P ++ + NK F++ V + + S HCP+
Sbjct: 190 PNQEGAYTWWSYMNKVRERNIGW--RIDYFIVSERIKDVIQEAAIHP--HVMGSDHCPVM 245
Query: 116 IEYD 119
+E +
Sbjct: 246 LELN 249
>gi|261208808|ref|ZP_05923245.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium TC 6]
gi|289566402|ref|ZP_06446829.1| exodeoxyribonuclease III [Enterococcus faecium D344SRF]
gi|294614472|ref|ZP_06694388.1| exodeoxyribonuclease III [Enterococcus faecium E1636]
gi|260077310|gb|EEW65030.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium TC 6]
gi|289161777|gb|EFD09650.1| exodeoxyribonuclease III [Enterococcus faecium D344SRF]
gi|291592780|gb|EFF24373.1| exodeoxyribonuclease III [Enterococcus faecium E1636]
Length = 250
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 31/132 (23%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + +K P ++ GD N I + + +
Sbjct: 124 EAFYNYL-ENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +E R S + D D +
Sbjct: 183 IDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPRLADAKIHTDIMG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ ++
Sbjct: 240 -SDHCPVELDLQ 250
>gi|299037|gb|AAB26054.1| APEX nuclease=major apurinic/apyrimidinic endonuclease [human,
Peptide, 317 aa]
Length = 317
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 189 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 247
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 248 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 304
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 305 GSDHCPITLYLAL 317
>gi|163802095|ref|ZP_02195991.1| exodeoxyribonuclease III [Vibrio sp. AND4]
gi|159174236|gb|EDP59044.1| exodeoxyribonuclease III [Vibrio sp. AND4]
Length = 268
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 14/142 (9%), Positives = 28/142 (19%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q + L + ++ GD N
Sbjct: 126 KRQFYKDLMTYLTDYHSNDEQLIVMGDINISSIDADIGIGEPNRKRWLKTGKCSFQPEER 185
Query: 39 -TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ E + R++ D + D + +
Sbjct: 186 EWLQTLLSWGFEDTFRNLHPEVDDRFSWFDYRSRGFDDNRGLRIDVILATPSLAKKCIES 245
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
D K S H P+ +
Sbjct: 246 DIDYELRGIEKPSDHAPIWSTF 267
>gi|118472074|ref|YP_885233.1| exodeoxyribonuclease III [Mycobacterium smegmatis str. MC2 155]
gi|118173361|gb|ABK74257.1| exodeoxyribonuclease III [Mycobacterium smegmatis str. MC2 155]
Length = 260
Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 29/128 (22%), Gaps = 20/128 (15%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPD---GL 51
+KW + GD+N D +Q + +
Sbjct: 135 QKWLAD--DPQAQIALTGDWNIAPTDEDVWDIDFFAGSTHVTEKERAAFQAIVDAQFADV 192
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ F + D + + + + + S H
Sbjct: 193 VRPFAPGPGVYTYWDYTQLRFPKRQGMRIDFILGSPAFAQRVGHAEIVREERKGKSPSDH 252
Query: 112 CPLTIEYD 119
P+ +E +
Sbjct: 253 APVLVELN 260
>gi|228923803|ref|ZP_04087081.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228835932|gb|EEM81295.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 339
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ + G ++ GD+N+ +++ +D + K P+ L+ +
Sbjct: 213 IRKQQVEYLKEYMNKHYEKGDYVIMGGDWNQLVSNAQLSDPKFVKERPEWLVELPKDFTD 272
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 273 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 329
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 330 NPVSAVFKLK 339
>gi|213965056|ref|ZP_03393254.1| exodeoxyribonuclease III [Corynebacterium amycolatum SK46]
gi|213952170|gb|EEB63554.1| exodeoxyribonuclease III [Corynebacterium amycolatum SK46]
Length = 265
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 31/131 (23%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTD----------------DFWQKMDP 48
E L++ + F++ GDFN F+
Sbjct: 134 ERLRQHIIATLDDDPEATFMMGGDFNIAPTDGDVWSMAAFTGKTHVTPPERAAFYALEQA 193
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + D + + + + +
Sbjct: 194 GMKEVTRQFTPNQWTYWDYKAGRFFKDEGMRIDFQLASPALATKASAGFIDIEERQGKGA 253
Query: 109 STHCPLTIEYD 119
S H P+ ++Y+
Sbjct: 254 SDHAPVIVDYE 264
>gi|162148012|ref|YP_001602473.1| exodeoxyribonuclease III [Gluconacetobacter diazotrophicus PAl 5]
gi|161786589|emb|CAP56171.1| putative exodeoxyribonuclease III [Gluconacetobacter diazotrophicus
PAl 5]
Length = 259
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 29/118 (24%), Gaps = 18/118 (15%)
Query: 20 GIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQEKESTC 63
G FV+AGD+N F + +
Sbjct: 140 GRDFVLAGDYNVCPTDEDCAPGALPPTDALVRPESRAAFRRLIWLGLTDALRALHPHGRY 199
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ + L+ + S + R++ S H PL I D
Sbjct: 200 YTFWDYQAGAWPRDCGLRIDHALLSPRIAERLDSAQPDRDERGRAQPSDHVPLVITLD 257
>gi|157127237|ref|XP_001654881.1| ap endonuclease [Aedes aegypti]
gi|108872984|gb|EAT37209.1| ap endonuclease [Aedes aegypti]
Length = 612
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 32/128 (25%), Gaps = 22/128 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDP 48
E K+ + P ++ GD N I + K +
Sbjct: 485 EKFHKYLKD-LDAKKPVILCGDMNVAHEEIDLANPKTNKKNAGFTPEEREGMTKLLSLGF 543
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ E+ S + + F+ V ++
Sbjct: 544 VDTFRQLYPEQ-SGAYTFWTYMGNARAKNVGWRLDYFITSE--RFVGKVVDNVIRSGVYG 600
Query: 109 STHCPLTI 116
S HCPLT+
Sbjct: 601 SDHCPLTL 608
>gi|319899105|ref|YP_004159198.1| exodeoxyribonuclease III [Bartonella clarridgeiae 73]
gi|319403069|emb|CBI76624.1| exodeoxyribonuclease III [Bartonella clarridgeiae 73]
Length = 260
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 40/136 (29%), Gaps = 20/136 (14%)
Query: 6 GEWLKKW---ADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMD 47
EW+K++ A + P ++AGD+N + + +Q +
Sbjct: 125 MEWMKRFYTHAKSLLAYEEPLILAGDYNVIPTPLDAKNPQEWSNDALFLPQIRQIFQCIV 184
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRR 105
G ++ ++ + L+ ++
Sbjct: 185 HLGFYDAIRCVTDTPSFSFWDFQAGAWKKNNGIRIDHLLLSPEAADQLICAYSQTEMRGH 244
Query: 106 SKLSTHCPLTIEYDFE 121
K S H P+ ++ + +
Sbjct: 245 QKPSDHIPIWVQLNCD 260
>gi|304388714|ref|ZP_07370772.1| exodeoxyribonuclease III [Neisseria meningitidis ATCC 13091]
gi|304337278|gb|EFM03454.1| exodeoxyribonuclease III [Neisseria meningitidis ATCC 13091]
Length = 259
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 134 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ D + + + +S + K S H P
Sbjct: 194 TLYPDVPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKALSAHV----YKDEKFSDHAP 249
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 250 LVMEYDY 256
>gi|118464012|ref|YP_883854.1| exodeoxyribonuclease III [Mycobacterium avium 104]
gi|118165299|gb|ABK66196.1| exodeoxyribonuclease III [Mycobacterium avium 104]
Length = 272
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 11/132 (8%), Positives = 25/132 (18%), Gaps = 24/132 (18%)
Query: 8 WLKK----WADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDP 48
L+ W + +AGD+N + +
Sbjct: 135 ALRDSAAGWLRE--DPAAQIALAGDWNIAPQDDDVWSMEFFAGATHVSEPERRAFNAILD 192
Query: 49 DGLLIR---FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
F + D + + + +
Sbjct: 193 AQFADLVRPFAPGPGVYTYWDYTALRFPKRQGMRIDFILGSPALARRVTHAQIDREERKG 252
Query: 106 SKLSTHCPLTIE 117
S H P+ ++
Sbjct: 253 KGASDHAPVLVD 264
>gi|109897358|ref|YP_660613.1| endonuclease I [Pseudoalteromonas atlantica T6c]
gi|109699639|gb|ABG39559.1| Endonuclease I [Pseudoalteromonas atlantica T6c]
Length = 1503
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 21/137 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ E L + Q+ P +I GD N Q L E+
Sbjct: 1308 RAAEALTTFLSQQFS-DTPTLIIGDLNSYAMEEPILKILQQGYTD---LANKFGGDEAYS 1363
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-----------------QSDLDTRRS 106
LD+ + + ++D + ++ D
Sbjct: 1364 YSFGGEFGYLDHALASATLVDQIVDTTEWHINADEPIVFDYNVEFKSDQQLIDYYAPDAY 1423
Query: 107 KLSTHCPLTIEYDFEKG 123
++S H P+ I E
Sbjct: 1424 RMSDHDPVVISLLLESE 1440
>gi|149914968|ref|ZP_01903497.1| exodeoxyribonuclease III [Roseobacter sp. AzwK-3b]
gi|149811156|gb|EDM70993.1| exodeoxyribonuclease III [Roseobacter sp. AzwK-3b]
Length = 260
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 28/113 (24%), Gaps = 18/113 (15%)
Query: 25 IAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIRFPQEKESTCNVIKR 68
+AGD+N F + ++ K +
Sbjct: 147 MAGDYNVIPQDEDAKRPEAWRKDALALPETRAAFRRIVNLGFTEAFRAFHKGPSHYTFWD 206
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLSTHCPLTIEYD 119
++ +FL+ + + R K S H P+ I D
Sbjct: 207 YQAGAWNRDDGIRIDHFLLTPQAADLLGDCQIDRDIRDREKPSDHVPIWITLD 259
>gi|17544859|ref|NP_518261.1| exodeoxyribonuclease III protein [Ralstonia solanacearum GMI1000]
gi|17427148|emb|CAD13668.1| putative exodeoxyribonuclease III protein [Ralstonia solanacearum
GMI1000]
Length = 261
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 29/142 (20%)
Query: 3 SQQGEW------LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D + + G V+ GD N I +
Sbjct: 119 RQQAKYRFMDLFMQHLTDLRHEKGREVVLCGDVNIVHKEIDIKNWKGNQKNSGCLPEERA 178
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + E R ++ + + +
Sbjct: 179 WLTRLFDEVGYVDVFRTLDPRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGIAATARS 236
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
S R K S H PLT++YD
Sbjct: 237 TSIF--RDIKFSDHAPLTVDYD 256
>gi|229095675|ref|ZP_04226655.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-29]
gi|228687708|gb|EEL41606.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-29]
Length = 190
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK P V+ GD N S + + ++
Sbjct: 75 QLAQEVNYFVQGIQKKNANAPVVVLGDMNDFEFSKPLKALEGTILKDMLNTV---PKENR 131
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + + + + S++ ++S H P+ + D +
Sbjct: 132 YTYIHEGNAQVLDHILVTNNIAPHTVVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 187
Query: 122 KGN 124
K +
Sbjct: 188 KAS 190
>gi|229114626|ref|ZP_04244040.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock1-3]
gi|228668691|gb|EEL24119.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock1-3]
Length = 786
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK P V+ GD N S + + ++
Sbjct: 671 QLAQEVNYFVQGIQKKNANAPVVVLGDMNDFEFSKPLKALEGTILKDMLNTV---PKENR 727
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + + + + S++ ++S H P+ + D +
Sbjct: 728 YTYIHEGNAQVLDHILVTNNIAPHTVVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 783
Query: 122 KGN 124
K +
Sbjct: 784 KAS 786
>gi|239624599|ref|ZP_04667630.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520985|gb|EEQ60851.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 251
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 27/122 (22%), Gaps = 23/122 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
++ P V GD N I + + + F +
Sbjct: 134 LEKKKPVVFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKFTDLLSAGFIDTFRYFYPD 193
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ R + D +VS S HCP+ +
Sbjct: 194 AEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSAAIHTEVMG----SDHCPVELV 249
Query: 118 YD 119
+
Sbjct: 250 ME 251
>gi|217977845|ref|YP_002361992.1| exodeoxyribonuclease III [Methylocella silvestris BL2]
gi|217503221|gb|ACK50630.1| exodeoxyribonuclease III [Methylocella silvestris BL2]
Length = 258
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 35/132 (26%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFN----------------RKINSIGDTDDFWQKMDPD 49
+ L A + ++ P V+AGD+N + F ++
Sbjct: 127 MDRLIAHARELLRLEEPLVLAGDYNVIPAAADCADPAAWVGDALFLPQTRARFRTLLNLG 186
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
E+ ++ + L+ +V+ K
Sbjct: 187 LTDALRATTDEAGLYTFWDYQAGAWQRNKGIRIDHLLLSPGAADRLVTTTIDKGLRAEDK 246
Query: 108 LSTHCPLTIEYD 119
S H P+ IE
Sbjct: 247 PSDHVPVRIELQ 258
>gi|23335380|ref|ZP_00120616.1| COG0708: Exonuclease III [Bifidobacterium longum DJO10A]
gi|189439121|ref|YP_001954202.1| exonuclease III [Bifidobacterium longum DJO10A]
gi|239621234|ref|ZP_04664265.1| exodeoxyribonuclease III [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|189427556|gb|ACD97704.1| Exonuclease III [Bifidobacterium longum DJO10A]
gi|239515695|gb|EEQ55562.1| exodeoxyribonuclease III [Bifidobacterium longum subsp. infantis
CCUG 52486]
Length = 286
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 24/139 (17%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK--------------- 45
ML + L+ + G V+ GDFN + + +
Sbjct: 151 MLKR-MGALRD---EAAHGGKQAVLCGDFNIAHTPLDIKNAKANEKHAGFLPEERAYVDK 206
Query: 46 MDPDGLLIRFPQE-----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ + + + +R ++ + D + + + + +
Sbjct: 207 WLDEYEFVDVMRSLAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETARGFVIDK 266
Query: 101 LDTRRSKLSTHCPLTIEYD 119
T + S H PLTI Y+
Sbjct: 267 APTYDKRWSDHAPLTITYE 285
>gi|330829038|ref|YP_004391990.1| exodeoxyribonuclease III [Aeromonas veronii B565]
gi|328804174|gb|AEB49373.1| Exodeoxyribonuclease III [Aeromonas veronii B565]
Length = 268
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 28/135 (20%), Gaps = 25/135 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
E L+ + + V+ GD N + +
Sbjct: 131 EDLQHYLETNHTPDDQLVLIGDMNISPTDLDIGIGEANRKRWLRDGKCSFLPIEREWMER 190
Query: 43 WQKMDPDGLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ E E R+K + + D S+
Sbjct: 191 LKGFGLTDTFRAANPTECERFSWFDYRSKGFDENRGLRIDLIMASDALKDSVTETGIDYE 250
Query: 102 DTRRSKLSTHCPLTI 116
K S H P+
Sbjct: 251 LRGIEKPSDHAPIWA 265
>gi|325068218|ref|ZP_08126891.1| exodeoxyribonuclease III Xth [Actinomyces oris K20]
Length = 154
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 34/133 (25%), Gaps = 21/133 (15%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------------FWQKM 46
+ + G V+AGD N + + F
Sbjct: 22 RMAELLAAARDGGSQVVMAGDLNVVRSERDIKNWKPNHNKIAGVMDEEIAHLEGWFASGW 81
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ +E+ +R K+ + D + + S S
Sbjct: 82 VDASRHLVGDEEQGPYTWWSQRGKAFDNNTGWRIDYQVLTPALAERAHSVTVDRAPDYAS 141
Query: 107 KLSTHCPLTIEYD 119
+ S H PL +EY
Sbjct: 142 RWSDHAPLVVEYR 154
>gi|255013349|ref|ZP_05285475.1| hypothetical protein B2_05535 [Bacteroides sp. 2_1_7]
gi|298376689|ref|ZP_06986644.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
gi|298266567|gb|EFI08225.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
Length = 281
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 23/104 (22%), Gaps = 4/104 (3%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
I P + GDFN D I C
Sbjct: 182 IAGNQPVFLTGDFNAFPTEEPIRILNDSGFLNDSYKITKEAPFGPVC----TYHGYDSTI 237
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + +S I Y S H P+ + +F
Sbjct: 238 KTEERLDYIWVTDSIQIDKYGVLTNTLYGHTPSDHFPVMVVAEF 281
>gi|307721179|ref|YP_003892319.1| exodeoxyribonuclease III [Sulfurimonas autotrophica DSM 16294]
gi|306979272|gb|ADN09307.1| exodeoxyribonuclease III [Sulfurimonas autotrophica DSM 16294]
Length = 258
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
+ +Q G ++ GD N I +
Sbjct: 134 AYCEQLKDEGKSIIVCGDVNTAHREIDLKNPKANSKTSGFLPIEREWIDKFLNHGYIDTF 193
Query: 53 IRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ +++ R + + D D + ++ D S H
Sbjct: 194 RYVHGDKEDAYSWWSYRFNARVKNVGWRIDYFFISEDLAENLEDAFILDYIEG----SDH 249
Query: 112 CPLTIEY 118
CP+ I
Sbjct: 250 CPIGIRI 256
>gi|229062743|ref|ZP_04200048.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH603]
gi|228716503|gb|EEL68206.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH603]
Length = 352
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LKK+ ++ + G ++ GD+N+ ++++ +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKKYMNKHYENGDYVIMGGDWNQLLSNVQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|226365708|ref|YP_002783491.1| exodeoxyribonuclease [Rhodococcus opacus B4]
gi|226244198|dbj|BAH54546.1| exodeoxyribonuclease [Rhodococcus opacus B4]
Length = 268
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 21/135 (15%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------------------FWQK 45
+L A+ + G V+ GD+N + + F +
Sbjct: 134 ARYLTVTAEAAVAAGRHVVVCGDWNIAHTELDLKNWKTNKKNSGFLPHEREWMSALFAEG 193
Query: 46 MDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
++ + R K+ + D + + + +T
Sbjct: 194 AHWADVVRLLEPDVAGPYSWWSYRGKAFDNDSGWRIDYQIATRELAERAKQAVVERAETY 253
Query: 105 RSKLSTHCPLTIEYD 119
+ S H P+T++Y
Sbjct: 254 DQRWSDHAPVTVQYR 268
>gi|209542628|ref|YP_002274857.1| exodeoxyribonuclease III Xth [Gluconacetobacter diazotrophicus PAl
5]
gi|209530305|gb|ACI50242.1| exodeoxyribonuclease III Xth [Gluconacetobacter diazotrophicus PAl
5]
Length = 258
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 29/118 (24%), Gaps = 18/118 (15%)
Query: 20 GIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQEKESTC 63
G FV+AGD+N F + +
Sbjct: 139 GRDFVLAGDYNVCPTDEDCAPGALPPTDALVRPESRAAFRRLIWLGLTDALRALHPHGRY 198
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ + L+ + S + R++ S H PL I D
Sbjct: 199 YTFWDYQAGAWPRDCGLRIDHALLSPRIAERLDSAQPDRDERGRAQPSDHVPLVITLD 256
>gi|182415509|ref|YP_001820575.1| endonuclease/exonuclease/phosphatase [Opitutus terrae PB90-1]
gi|177842723|gb|ACB76975.1| Endonuclease/exonuclease/phosphatase [Opitutus terrae PB90-1]
Length = 298
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 12/118 (10%), Positives = 29/118 (24%), Gaps = 4/118 (3%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ ++ Q + +P ++ GDFN + + ++
Sbjct: 185 QKAAILIRDRLAQ-LDASVPLLLVGDFNCAAGNSPAYETLTREAGLTDTWTAATARVNEG 243
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
N + L ++ + S H P+ + F
Sbjct: 244 FNTFHNYEPPRHD---GVRIDWILARTPSAVPRAEIVTYRENGQTPSDHFPVLADVQF 298
>gi|220922845|ref|YP_002498147.1| exodeoxyribonuclease III Xth [Methylobacterium nodulans ORS 2060]
gi|219947452|gb|ACL57844.1| exodeoxyribonuclease III Xth [Methylobacterium nodulans ORS 2060]
Length = 269
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 37/137 (27%), Gaps = 25/137 (18%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--------------------QK 45
+ L+ W ++ + P ++ GD N +
Sbjct: 136 MDELRAWGGRRSTS--PAILVGDLNVAPLEHDVWSHKQLLDVVSHTPVETERLETLRGEA 193
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDT 103
D + P+ ++ R+ R + + + S +
Sbjct: 194 GWIDTMRHLRPEPEKIYTWWSYRSPDWA-AADKGRRLDHIWVTPDLAGTVRSVTVARHAR 252
Query: 104 RRSKLSTHCPLTIEYDF 120
K S H P+T+E +
Sbjct: 253 AWEKPSDHVPVTVELEL 269
>gi|328702292|ref|XP_001952290.2| PREDICTED: recombination repair protein 1-like [Acyrthosiphon
pisum]
Length = 317
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 32/126 (25%), Gaps = 20/126 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
E +K+ + + T P V+ GD N I + + G
Sbjct: 190 EAFRKYLKE-LDTKKPVVLTGDLNVAHEEIDIANPKTNTKSAGFTKEERDNMSLLLEQGF 248
Query: 52 LIRFPQ--EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ F +++ + + F+ F S
Sbjct: 249 VDTFRTLNPEKTGAYTFWTYFHNSRAKNVGWRLDYFITSKRFMDNVC--DSTIRNEVLGS 306
Query: 110 THCPLT 115
HCP+
Sbjct: 307 DHCPIV 312
>gi|295675147|ref|YP_003603671.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1002]
gi|295434990|gb|ADG14160.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1002]
Length = 259
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 31/142 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++ ++ GD N I +
Sbjct: 119 RQQAKF--RFMDEFMPHLAELAKEREVIVCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + Q E R ++ + + +
Sbjct: 177 WLDKLFDEVGYVDVFRTLDQRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGIASKAKR 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
R K S H PLT++YD
Sbjct: 235 TDVF--RDIKFSDHAPLTVDYD 254
>gi|260584873|ref|ZP_05852618.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
gi|260157530|gb|EEW92601.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
Length = 253
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 32/136 (23%), Gaps = 26/136 (19%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------ 49
+Q W + +K++ P + GD N I + +
Sbjct: 122 RQV-WEDDFLAFIKKLEETKPVIFCGDLNVAHKEIDLANPKTNTKNAGFTKEEREKFDQI 180
Query: 50 ------GLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
E + + F++ + S Q
Sbjct: 181 VENGLVDAFRFRYPEAVGAYTWWSYMGGARARNIGW--RIDYFVVSE--VLTSRIQEVKI 236
Query: 103 TRRSKLSTHCPLTIEY 118
S HCP+ +E
Sbjct: 237 RADVTGSDHCPVEMEI 252
>gi|229160143|ref|ZP_04288144.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus R309803]
gi|228623354|gb|EEK80179.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus R309803]
Length = 788
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNHFVQGIQKKNANAPVVVLGDMNDFEFAKPLKALEGTNL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|126277963|ref|XP_001379263.1| PREDICTED: similar to APEX nuclease (multifunctional DNA repair
enzyme) 1 [Monodelphis domestica]
Length = 385
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + P V+ GD N I + Q +
Sbjct: 257 EAFRKFLKG-LSAKKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 315
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
E + + + FL+ + ++
Sbjct: 316 LTDSFRHLYPE-AAYAYTFWTYMMNARAKNVGWRLDYFLLSQALLPALC--DSKIRSKAL 372
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 373 GSDHCPITLLLAL 385
>gi|150398248|ref|YP_001328715.1| exodeoxyribonuclease III [Sinorhizobium medicae WSM419]
gi|150029763|gb|ABR61880.1| exodeoxyribonuclease III [Sinorhizobium medicae WSM419]
Length = 268
Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 31/131 (23%), Gaps = 21/131 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDG 50
K + + GI ++ GD N D
Sbjct: 138 KLLHAEAEEGISSILVGDLNIAPLEHDVWSHKQLLKIVSHTPIETEGLISVMTGGAWVDL 197
Query: 51 LLIRFPQEKESTCNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ P ++ R K D+ D + +V + + S
Sbjct: 198 MRRHTPPPEKLYTWWSYRAKDWAAADRGRRLDHIWSSADLANQLVRVEIIKEARGWERPS 257
Query: 110 THCPLTIEYDF 120
H P+ ++
Sbjct: 258 DHVPVIAHFEL 268
>gi|157830335|pdb|1BIX|A Chain A, The Crystal Structure Of The Human Dna Repair Endonuclease
Hap1 Suggests The Recognition Of Extra-Helical
Deoxyribose At Dna Abasic Sites
Length = 287
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 159 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 217
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 218 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 274
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 275 GSDHCPITLYLAL 287
>gi|319900045|ref|YP_004159773.1| Endonuclease/exonuclease/phosphatase [Bacteroides helcogenes P
36-108]
gi|319415076|gb|ADV42187.1| Endonuclease/exonuclease/phosphatase [Bacteroides helcogenes P
36-108]
Length = 295
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 29/118 (24%), Gaps = 5/118 (4%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L K + I P GD+N +S + D + +
Sbjct: 183 RESSKLLLKKIRE-IAGNTPAFSTGDYNATPDSEPIRIIVSDGLLKDSYTLSEQAPYGTV 241
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + I+ Y + S H P+ + +
Sbjct: 242 G----TYQGFKRLANSQSRIDYVFVTKEVRILKYGTLNEVPNGKFPSDHFPVMVVAEL 295
>gi|307638182|gb|ADN80632.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|325996778|gb|ADZ52183.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|325998370|gb|ADZ50578.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
Length = 250
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 29/121 (23%), Gaps = 23/121 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
++ P ++ GD N N I + + + F
Sbjct: 133 LELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERKKFNELLNAGFIDTFRYFYPN 192
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+++ ++ D + + S HCP+ +E
Sbjct: 193 KEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALI----YKDILGSDHCPVGLE 248
Query: 118 Y 118
Sbjct: 249 L 249
>gi|228904025|ref|ZP_04068131.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis IBL
4222]
gi|228855621|gb|EEN00175.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis IBL
4222]
Length = 792
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + ++ QK T P V+ GD N + + ++ ++
Sbjct: 677 QLAQEVNQFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKALEGTNL---KNMLNTVPKENR 733
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 734 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 789
Query: 122 KGN 124
K +
Sbjct: 790 KAS 792
>gi|218896127|ref|YP_002444538.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus G9842]
gi|218542051|gb|ACK94445.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus G9842]
Length = 788
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + ++ QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNQFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKALEGTNL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|75759359|ref|ZP_00739455.1| Endonuclease/Exonuclease/phosphatase family protein [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|74493126|gb|EAO56246.1| Endonuclease/Exonuclease/phosphatase family protein [Bacillus
thuringiensis serovar israelensis ATCC 35646]
Length = 788
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + ++ QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNQFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKALEGTNL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|303229843|ref|ZP_07316620.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|303231217|ref|ZP_07317955.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302514124|gb|EFL56128.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302515473|gb|EFL57438.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 251
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 30/133 (22%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P ++ GD N N I + + +
Sbjct: 124 DAFRAYLLE-LDKKKPVILCGDLNVAHNEIDLKNPKTNRKNAGFSDEERAKMTELLESGF 182
Query: 50 -GLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + K+ D I
Sbjct: 183 TDTFRYLYPDAVDEYSWWSYMGKARDRNVGWRIDYFITSKRLDDKIKEAKIHQQIFG--- 239
Query: 108 LSTHCPLTIEYDF 120
S HCP+ ++ +
Sbjct: 240 -SDHCPVELDIEL 251
>gi|296454347|ref|YP_003661490.1| exodeoxyribonuclease III Xth [Bifidobacterium longum subsp. longum
JDM301]
gi|296183778|gb|ADH00660.1| exodeoxyribonuclease III Xth [Bifidobacterium longum subsp. longum
JDM301]
Length = 286
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 24/139 (17%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK--------------- 45
ML + L+ + G V+ GDFN + + +
Sbjct: 151 MLKR-MGALRD---EAAHGGKQAVLCGDFNIAHTPLDIKNAKANEKHAGFLPEERAYVDK 206
Query: 46 MDPDGLLIRFPQE-----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ + + + +R ++ + D + + + + +
Sbjct: 207 WLDEYEFVDVMRSLAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETARGFVIDK 266
Query: 101 LDTRRSKLSTHCPLTIEYD 119
T + S H PLTI Y+
Sbjct: 267 APTYDKRWSDHAPLTITYE 285
>gi|163734305|ref|ZP_02141745.1| exodeoxyribonuclease III, putative [Roseobacter litoralis Och 149]
gi|161392313|gb|EDQ16642.1| exodeoxyribonuclease III, putative [Roseobacter litoralis Och 149]
Length = 262
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 29/133 (21%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W + ++ GD N D
Sbjct: 133 MRDWFHTQKPEKS--ILVGDLNIAPREDDVWDHKKLLKVVSHTPIEVEHLAQTQDAGGWV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ + E + R + D R + + + K
Sbjct: 191 DITRQDIPEGKLFSWWSYR-AADWDAADKGRRLDHVWATSDIAAAGHDSRIVRGARGWEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ ++D
Sbjct: 250 PSDHAPVFAQFDL 262
>gi|311064022|ref|YP_003970747.1| exodeoxyribonuclease III [Bifidobacterium bifidum PRL2010]
gi|310866341|gb|ADP35710.1| Xth Exodeoxyribonuclease III [Bifidobacterium bifidum PRL2010]
Length = 285
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 20/126 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI-------------------- 53
D+ + G V+ GDFN + + L
Sbjct: 159 DEASRGGRQAVLCGDFNIAHTPLDIKNAKANIKHAGFLPAERAYIDRWLGEYEFVDVIRS 218
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ +R ++ + D + + + + + + ++ S H P
Sbjct: 219 LAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETARGFVIDKAPSYDARWSDHAP 278
Query: 114 LTIEYD 119
LT+ YD
Sbjct: 279 LTVTYD 284
>gi|119503212|ref|ZP_01625296.1| exodeoxyribonuclease III [marine gamma proteobacterium HTCC2080]
gi|119460858|gb|EAW41949.1| exodeoxyribonuclease III [marine gamma proteobacterium HTCC2080]
Length = 259
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLL 52
+ F+I GD+N I + + ++ +
Sbjct: 132 HLQALKRKRREFIICGDWNICHREIDLKNWRGNRKNSGFLPHERAWLDRVYDELGWVDVF 191
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
R + R ++ L + S R + S H
Sbjct: 192 RRINPNPDQYTWWSNRGQAWAKNVGW--RLDYMLCTPGIASAGSSASIY--RDERFSDHA 247
Query: 113 PLTIEYD 119
PL I++D
Sbjct: 248 PLIIDFD 254
>gi|83649180|ref|YP_437615.1| extracellular nuclease [Hahella chejuensis KCTC 2396]
gi|83637223|gb|ABC33190.1| predicted extracellular nuclease [Hahella chejuensis KCTC 2396]
Length = 835
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 34/138 (24%), Gaps = 22/138 (15%)
Query: 3 SQQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
S+ L W D +I GD N Q L+
Sbjct: 642 SEAAVALADWLASDPTGAEDADVLIIGDLNAYAKEDPIMALQTQGY---HNLLAELNGDA 698
Query: 61 STCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDT 103
+ V LD+ + + + + + Y+ S
Sbjct: 699 AYSYVFSGETGYLDHALASESLRSQVVGVSEWHINGDEPRALDYNVEFKTDAQVLSLYSP 758
Query: 104 RRSKLSTHCPLTIEYDFE 121
+ S H P+ +E +
Sbjct: 759 DAFRSSDHDPVIVEISLD 776
>gi|167648964|ref|YP_001686627.1| exodeoxyribonuclease III Xth [Caulobacter sp. K31]
gi|167351394|gb|ABZ74129.1| exodeoxyribonuclease III Xth [Caulobacter sp. K31]
Length = 268
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 27/130 (20%), Gaps = 26/130 (20%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLIRF 55
+K P ++ GD N +D L
Sbjct: 137 KKRDPKAPLILTGDLNVAPGENDVWSHRQMSKIVSHTPVELEAFAGLVGSIDFLDLPRLA 196
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI-------VSYDQSDLDTRRSKL 108
E E + + + L VS D +
Sbjct: 197 TPEPEKLFSWWSYRAADFRKSNRGLRLDHILASPGLRDAAIIDGKVSSKVHDTVREWERP 256
Query: 109 STHCPLTIEY 118
S H P+T +
Sbjct: 257 SDHAPVTADL 266
>gi|294788545|ref|ZP_06753787.1| exodeoxyribonuclease III [Simonsiella muelleri ATCC 29453]
gi|294483422|gb|EFG31107.1| exodeoxyribonuclease III [Simonsiella muelleri ATCC 29453]
Length = 259
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 41/143 (28%), Gaps = 29/143 (20%)
Query: 3 SQQG---EWLKKW---ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK----------- 45
+Q E+L + + +G V+ GD+N +I +
Sbjct: 117 ERQAYKYEFLDAFYPLLAELKASGRDVVVCGDWNIAHQNIDIKNWKGNLKNSGFLPEERE 176
Query: 46 --------MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + + R ++ + D + + + +
Sbjct: 177 WIGHVITKLGWVDIWRTLYPDVAGYTWWSNRGQAYANDVGWRIDYQMVTPNLATKAHTAH 236
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+ K S H PL ++YD+
Sbjct: 237 V----YKEVKFSDHAPLVVDYDY 255
>gi|293610563|ref|ZP_06692863.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292826907|gb|EFF85272.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 280
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 27/140 (19%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------F 42
L + + LK+W D+ +I GD+N I +
Sbjct: 149 LGEYAKILKQWRDE----NKSVIICGDYNIVHKRIDIKNWSGNQKSSGCLPHERAWLDHI 204
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ ++ E E R ++ + +
Sbjct: 205 YDELGYVDTFRVVRTEAELYSWWSNRGQARAKNVGW--RIDYHACSPDWKA--RTINAWV 260
Query: 103 TRRSKLSTHCPLTIEYDFEK 122
+ S H P+ I+Y ++
Sbjct: 261 YKDQWFSDHAPVIIDYKIQE 280
>gi|254486587|ref|ZP_05099792.1| exodeoxyribonuclease III [Roseobacter sp. GAI101]
gi|214043456|gb|EEB84094.1| exodeoxyribonuclease III [Roseobacter sp. GAI101]
Length = 290
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 27/133 (20%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------DDFWQKMDPD 49
++ W + ++ GD N +
Sbjct: 161 MRDWF--RGDKPRKSILVGDLNIAPREDDVWGHKQLLKVVSHTPIEVEKLAETQDAGGFI 218
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ + E R K D R + S S K
Sbjct: 219 DITRQDIPEGNLYSWWSYRAKDW-DAADKGRRLDHVWATPDISNAAHSSRVLRDARGWEK 277
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 278 PSDHAPVFATFDL 290
>gi|325123873|gb|ADY83396.1| catabolite repression control protein [Acinetobacter calcoaceticus
PHEA-2]
Length = 274
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 27/140 (19%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------F 42
L + + LK+W D+ +I GD+N I +
Sbjct: 143 LGEYAKILKQWRDE----NKSVIICGDYNIVHKRIDIKNWSGNQKSSGCLPHERAWLDHI 198
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ ++ E E R ++ + +
Sbjct: 199 YDELGYVDTFRVVRTEAELYSWWSNRGQARAKNVGW--RIDYHACSPDWKA--RTINAWV 254
Query: 103 TRRSKLSTHCPLTIEYDFEK 122
+ S H P+ I+Y ++
Sbjct: 255 YKDQWFSDHAPVIIDYKIQE 274
>gi|320332627|ref|YP_004169338.1| endonuclease/exonuclease/phosphatase [Deinococcus maricopensis DSM
21211]
gi|319753916|gb|ADV65673.1| Endonuclease/exonuclease/phosphatase [Deinococcus maricopensis DSM
21211]
Length = 1242
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/147 (10%), Positives = 37/147 (25%), Gaps = 29/147 (19%)
Query: 4 QQGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ + + +A+Q + +I GD N + + L + ++
Sbjct: 852 QQAQAVLAFAEQLRASTGDPDVLIMGDLNAYGDEDPIRTLVAGGFES---LNKRIPAEDR 908
Query: 62 TCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ--------------- 98
LD+ + + + + Y+
Sbjct: 909 YSYQFSGQFGYLDHALASTALAGQVTGITEWHINSDEPVFLDYNVEFKNNPECKSTTCTT 968
Query: 99 -SDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ S H P+ + + +
Sbjct: 969 PDLYAPTAFRASDHDPVLVGLNLTADS 995
>gi|304385589|ref|ZP_07367933.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
gi|304328093|gb|EFL95315.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
Length = 251
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 32/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
+ + + Q + P + GD N I +D Q
Sbjct: 124 DAFRAYVKQ-LADTKPVIFCGDLNVAHEEIDLKNDRTNHHNAGFTDEERQKFTELLQSGF 182
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D +P ++ R + + D +
Sbjct: 183 TDTYRYFYPDKEGVYSWWSYRFNARANNAGWRIDYFVTSQALDKQLADAKIHTEIFG--- 239
Query: 108 LSTHCPLTIEYDF 120
S HCP+ ++ +
Sbjct: 240 -SDHCPIELDLNL 251
>gi|300313958|ref|YP_003778050.1| exodeoxyribonuclease III protein [Herbaspirillum seropedicae SmR1]
gi|300076743|gb|ADJ66142.1| exodeoxyribonuclease III protein [Herbaspirillum seropedicae SmR1]
Length = 258
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 21/135 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQ 44
+ E + K+G VI GD+N I + +
Sbjct: 125 RFMEAFLPHLMELEKSGREVVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMTRIFD 184
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
++ + R E N+ + + + S +
Sbjct: 185 QLGLVDVYRRLHPETTGEAYTWWSNRGQAWANNVGWRIDYHVSTPGIAAK--AVSAAIYK 242
Query: 105 RSKLSTHCPLTIEYD 119
+ S H PLT+ Y
Sbjct: 243 EQRFSDHAPLTVVYS 257
>gi|294499447|ref|YP_003563147.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
gi|294349384|gb|ADE69713.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
Length = 253
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 36/140 (25%), Gaps = 27/140 (19%)
Query: 2 LSQQGEW---LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------- 41
L ++ +W L + + ++ GD N I +
Sbjct: 115 LEERLQWEDDLLVYLKKLNSRKA-VILCGDLNVAHAEIDLRNPKPNRGNSGFTIEERGKM 173
Query: 42 --FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
D +P ++ + NK F++ V Q
Sbjct: 174 TTLLASGFLDTFRYLYPNQEGAYTWWSYMNKVRERNIGW--RIDYFIVSERMKNVI--QE 229
Query: 100 DLDTRRSKLSTHCPLTIEYD 119
S HCP+ +E +
Sbjct: 230 SAIHPHVMGSDHCPVMLELN 249
>gi|270290148|ref|ZP_06196374.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|270281685|gb|EFA27517.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
Length = 251
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 32/133 (24%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
+ + + Q + P + GD N I +D Q
Sbjct: 124 DAFRAYVKQ-LADTKPVIFCGDLNVAHEEIDLKNDRTNHHNAGFTDEERQKFTELLQSGF 182
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D +P ++ R + + D +
Sbjct: 183 TDTYRYFYPDKEGVYSWWSYRFNARANNAGWRIDYFVTSQALDKQLADAKIHTEIFG--- 239
Query: 108 LSTHCPLTIEYDF 120
S HCP+ ++ +
Sbjct: 240 -SDHCPIELDLNL 251
>gi|152984142|ref|YP_001348052.1| exonuclease III [Pseudomonas aeruginosa PA7]
gi|150959300|gb|ABR81325.1| exodeoxyribonuclease III [Pseudomonas aeruginosa PA7]
Length = 270
Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 25/137 (18%), Gaps = 27/137 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ + K V+ GD N +
Sbjct: 133 LQLLLENSFKPEQALVVMGDINISPEDCDIGIGEENRKRWLKTGKCSFLPEEREWLATLK 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
E + R++ D L +
Sbjct: 193 NWGLVDSFRALNPEVTDRFSWFDYRSRGFEDTPKRGLRIDVILASRALQSRFRDAGIDYD 252
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +E
Sbjct: 253 LRGMEKPSDHAPIWLEL 269
>gi|296139981|ref|YP_003647224.1| exodeoxyribonuclease III Xth [Tsukamurella paurometabola DSM 20162]
gi|296028115|gb|ADG78885.1| exodeoxyribonuclease III Xth [Tsukamurella paurometabola DSM 20162]
Length = 291
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 35/142 (24%), Gaps = 20/142 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------- 41
L+ L + G F++ GD N T+
Sbjct: 146 LAAFARELDRNRRAAHARGREFLLLGDLNLAHLPHDVTNWRPAQKMEGFLPEERAWLDAR 205
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ D + S D+ + + VS
Sbjct: 206 LGPRTLVDVVRRLHGDRPGPLSWWSWAGASFTKNVGWRIDHHLASPGLAATAVSVVVDKE 265
Query: 102 DTRRSKLSTHCPLTIEYDFEKG 123
++LS H P+ ++Y F G
Sbjct: 266 ARADARLSDHAPVVVDYAFPAG 287
>gi|228964133|ref|ZP_04125257.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228795567|gb|EEM43050.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 129
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + ++ QK T P V+ GD N + + ++ ++
Sbjct: 14 QLAQEVNQFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKALEGTNL---KNMLNTVPKENR 70
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 71 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 126
Query: 122 KGN 124
K +
Sbjct: 127 KAS 129
>gi|213691818|ref|YP_002322404.1| exodeoxyribonuclease III Xth [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213523279|gb|ACJ52026.1| exodeoxyribonuclease III Xth [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320457912|dbj|BAJ68533.1| putative exodeoxyribonuclease [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 286
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 24/139 (17%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK--------------- 45
ML + L+ + G V+ GDFN + + +
Sbjct: 151 MLKR-MGALRD---EAAHGGKQAVLCGDFNIAHTPLDIKNAKANEKHAGFLPEERAYVDK 206
Query: 46 MDPDGLLIRFPQE-----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ + + + +R ++ + D + + + + +
Sbjct: 207 WLDEYEFVDVMRSLAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETARGFVIDK 266
Query: 101 LDTRRSKLSTHCPLTIEYD 119
T + S H PLTI Y+
Sbjct: 267 APTYDKRWSDHAPLTITYE 285
>gi|16799425|ref|NP_469693.1| hypothetical protein lin0348 [Listeria innocua Clip11262]
gi|16412777|emb|CAC95581.1| lin0348 [Listeria innocua Clip11262]
Length = 257
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 4/105 (3%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
I +P ++ GDFN + + + D + + + L
Sbjct: 156 LIAENLPVILLGDFNTEPETPTYNFITKKYQDAQ---LISQTPIKGPIGSFHDFQP-LRP 211
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ F + SY S H P+T ++
Sbjct: 212 ENELEKIDYIFVSKEFRVHSYKTITDQVDGCSASDHFPVTATLEW 256
>gi|116050489|ref|YP_790692.1| exonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
gi|296389031|ref|ZP_06878506.1| exonuclease III [Pseudomonas aeruginosa PAb1]
gi|313107448|ref|ZP_07793636.1| exodeoxyribonuclease III [Pseudomonas aeruginosa 39016]
gi|115585710|gb|ABJ11725.1| exodeoxyribonuclease III [Pseudomonas aeruginosa UCBPP-PA14]
gi|310880138|gb|EFQ38732.1| exodeoxyribonuclease III [Pseudomonas aeruginosa 39016]
Length = 270
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 24/137 (17%), Gaps = 27/137 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L+ + K V+ GD N +
Sbjct: 133 LQSLLENSFKPEQALVVMGDINISPEDCDIGIGEENRKRWLKTGKCSFLPEEREWLATLK 192
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDL 101
E + R++ D L
Sbjct: 193 NWGLVDSFRALNPEVNDRFSWFDYRSRGFEDTPKRGLRIDVILASRVLQSRFKDAGIDYD 252
Query: 102 DTRRSKLSTHCPLTIEY 118
K S H P+ +E
Sbjct: 253 LRGMEKPSDHAPIWLEL 269
>gi|319780773|ref|YP_004140249.1| exodeoxyribonuclease III Xth [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166661|gb|ADV10199.1| exodeoxyribonuclease III Xth [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 268
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 31/130 (23%), Gaps = 21/130 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPDGLLI 53
+ V+ GD N + + L+
Sbjct: 139 IRAEHDEVSGSVLVGDLNIAPLEHDVWSHKQLLNVVSHTPVETENFEAMRRAGNWVDLMR 198
Query: 54 RFPQEKES-TCNVIKRNKSS-LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+++ R + L D+ + S Y+ L + S H
Sbjct: 199 LNVPDEQKLYTWWSYRAQDWELSNRGRRLDHVWSSPNLVPSFSGYEILRLARGWERPSDH 258
Query: 112 CPLTIEYDFE 121
P+ +D +
Sbjct: 259 VPVIARFDLD 268
>gi|254777166|ref|ZP_05218682.1| exodeoxyribonuclease III [Mycobacterium avium subsp. avium ATCC
25291]
Length = 272
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 11/137 (8%), Positives = 27/137 (19%), Gaps = 24/137 (17%)
Query: 8 WLKK----WADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDP 48
L+ W + +AGD+N + +
Sbjct: 135 ALRDSAAGWLRE--DPAAQIALAGDWNIAPQDDDVWSMEIFAGATHVSEPERRAFNAILD 192
Query: 49 DGLLIR---FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
F + D + + + +
Sbjct: 193 AQFADLVRPFAPGPGVYTYWDYTALRFPKRQGMRIDFILGSPALARRVTHAQIDREERKG 252
Query: 106 SKLSTHCPLTIEYDFEK 122
S H P+ ++ ++
Sbjct: 253 KGASDHAPVLVDVSRDE 269
>gi|150017193|ref|YP_001309447.1| endonuclease/exonuclease/phosphatase [Clostridium beijerinckii
NCIMB 8052]
gi|149903658|gb|ABR34491.1| Endonuclease/exonuclease/phosphatase [Clostridium beijerinckii
NCIMB 8052]
Length = 254
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 3/110 (2%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
LKK + +P ++ GDFN + NS K+ L Q+
Sbjct: 145 LKKILEFIEDEKLPVILMGDFNDRPNSKLIKSLKEGKISSKKL--LPVQDVNMGLYNEST 202
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + +V+ + + S H PL +
Sbjct: 203 IGNFKR-SGKGLHIDYIFVSEEIDVVNAEIIKYNVNGKYPSDHYPLMADI 251
>gi|255534152|ref|YP_003094524.1| exodeoxyribonuclease III Xth [Pedobacter heparinus DSM 2366]
gi|255347136|gb|ACU06462.1| exodeoxyribonuclease III Xth [Pedobacter heparinus DSM 2366]
Length = 256
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 33/132 (25%), Gaps = 22/132 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+ + + KT +I+GD+N +I +
Sbjct: 128 MRFFEAYITALRKTLPNLIISGDYNICHTAIDIHNPKSNANSSGFLPEEREWMELFLNGG 187
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ R S L + S L +
Sbjct: 188 FIDTFRHFNKDPHHYTWWSFRANSRAKNLGW--RIDYHLATQAMLPKLKKVSILA--DAI 243
Query: 108 LSTHCPLTIEYD 119
S HCP+ +E +
Sbjct: 244 HSDHCPVLLELN 255
>gi|170750144|ref|YP_001756404.1| exodeoxyribonuclease III Xth [Methylobacterium radiotolerans JCM
2831]
gi|170656666|gb|ACB25721.1| exodeoxyribonuclease III Xth [Methylobacterium radiotolerans JCM
2831]
Length = 269
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/134 (10%), Positives = 32/134 (23%), Gaps = 25/134 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--------------------QKMDP 48
L+ W +++ P ++ GD N +
Sbjct: 139 LRAWGGKRVSG--PAILVGDLNVAPLEHDVWSHKQLLDVVSHTPLETEALEVLRGEAGWI 196
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDTRRS 106
D P+ ++ R+ R + + +
Sbjct: 197 DAARHLTPEPEKIYTWWSYRSPDWS-AANKGRRLDHAWVSPDLAGTVRKVEVLREARAWE 255
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+T+ +
Sbjct: 256 RPSDHAPVTLTLEL 269
>gi|158298437|ref|XP_318609.4| AGAP009587-PA [Anopheles gambiae str. PEST]
gi|157013880|gb|EAA14571.4| AGAP009587-PA [Anopheles gambiae str. PEST]
Length = 606
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 33/131 (25%), Gaps = 22/131 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E ++ + P ++ GD N I + K +
Sbjct: 479 EKFHQYLRD-LDAKKPVILCGDMNVAHEEIDLANPKTNKKNAGFTPEEREGMTELLSYGF 537
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ ++ + + F+ + ++ +
Sbjct: 538 VDTFRKLYPDR-TGAYTFWTYMGGARAKNVGWRLDYFITSERLAGK--VTDNVIRSQVFG 594
Query: 109 STHCPLTIEYD 119
S HCP+T+ +
Sbjct: 595 SDHCPVTLFLN 605
>gi|330993300|ref|ZP_08317236.1| Exodeoxyribonuclease III [Gluconacetobacter sp. SXCC-1]
gi|329759702|gb|EGG76210.1| Exodeoxyribonuclease III [Gluconacetobacter sp. SXCC-1]
Length = 261
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD 49
E L A ++ G FV+ GD+N F + +
Sbjct: 126 MEALALHARGLLQAGQDFVLMGDYNVCPTDEDCAPGALPPTDALVRPESRAAFRRLLWLG 185
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+++ + L+ +++ + + + +
Sbjct: 186 LTDALRALHPAGRFYTFWDYQAAAWQRDSGLRIDHALLSPRVAERLLTALPARDERGKPQ 245
Query: 108 LSTHCPLTIEY 118
S H PL I
Sbjct: 246 PSDHVPLAITL 256
>gi|309775417|ref|ZP_07670420.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308916806|gb|EFP62543.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 254
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 34/132 (25%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + +T ++ GD N I + + +
Sbjct: 124 DAFRTYLHKLNETKS-VLVCGDLNVAHKEIDLKNPKTNRRNAGFTDEERNKMSVLLDSGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
E+E R K+ D D I
Sbjct: 183 IDSYRYLYPEQEGVYSWWSYRFKAREKNAGWRIDYFLVSEDAKDGIREAKIHT----DIY 238
Query: 108 LSTHCPLTIEYD 119
S HCP+++E++
Sbjct: 239 GSDHCPVSLEFE 250
>gi|228984258|ref|ZP_04144440.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228775545|gb|EEM23929.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 788
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTNL---KNMLNAVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|260887970|ref|ZP_05899233.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|330838548|ref|YP_004413128.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|260862221|gb|EEX76721.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
gi|329746312|gb|AEB99668.1| exodeoxyribonuclease III [Selenomonas sputigena ATCC 35185]
Length = 250
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 27/131 (20%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + + P V+ GD N I + + +
Sbjct: 124 EAFRDYLLA-LDAKKPVVVCGDLNVAHTEIDLKNPKTNRKNAGFTDEEREKMTELLAAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ K+ D + I +
Sbjct: 183 TDTFRALYPDKTGIYTWWSYLRKARETNAGWRIDYFLVSDRLAPKIKEATIHNEVFG--- 239
Query: 108 LSTHCPLTIEY 118
S HCP+ +
Sbjct: 240 -SDHCPVGLVL 249
>gi|220933300|ref|YP_002512199.1| exodeoxyribonuclease III Xth [Thioalkalivibrio sp. HL-EbGR7]
gi|219994610|gb|ACL71212.1| exodeoxyribonuclease III Xth [Thioalkalivibrio sp. HL-EbGR7]
Length = 261
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/144 (9%), Positives = 34/144 (23%), Gaps = 29/144 (20%)
Query: 3 SQQGEWLK------KWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
+Q + + +++ GD+N I +
Sbjct: 117 ERQAAKFRFMDLFLDHMRALRRKRREYIVCGDWNIAHKPIDLKNWKSNQKNSGFLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ E + R ++ ++
Sbjct: 177 WLDTLFDELGWVDAFRVVNTEPDQYTWWSNRGQAWAKNVGW--RLDYQVVSPGLRDKIRS 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFE 121
S + S H PL+++YD
Sbjct: 235 ASIYT--EQRFSDHAPLSMDYDLP 256
>gi|73666996|ref|YP_303012.1| exodeoxyribonuclease III [Ehrlichia canis str. Jake]
gi|72394137|gb|AAZ68414.1| Exodeoxyribonuclease III [Ehrlichia canis str. Jake]
Length = 279
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 32/131 (24%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQ---KMDP 48
+ L A + ++ GD+N I + ++ +
Sbjct: 148 DQLIDRALFLLNKEEILILGGDYNVAPYPIDVYSTEIMDGRLCFHQYEREKFRVILNLGF 207
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + + + + DN ++S D
Sbjct: 208 TDAFRVLNEHDQKFSWWNYKAGAWQENRGLRIDNLLLSPQAVDKLLSCVIHDELRGLDTP 267
Query: 109 STHCPLTIEYD 119
S H P+ +
Sbjct: 268 SDHAPVICTLE 278
>gi|329964595|ref|ZP_08301649.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
fluxus YIT 12057]
gi|328524995|gb|EGF52047.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
fluxus YIT 12057]
Length = 286
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 5/107 (4%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I +P +I GDFN + + Q ++ G+ + +
Sbjct: 185 KEIAPDVPAIITGDFNCEPDEEP-----LQILEKGGMQNTSETAGITYGPSWSFHDFGRI 239
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + Y LS HCP+ + +
Sbjct: 240 PLDERVLIDYVFVTDGAKVNRYRVIQDAPENGFLSDHCPVLVNLTLQ 286
>gi|297197811|ref|ZP_06915208.1| endonuclease/exonuclease/phosphatase [Streptomyces sviceus ATCC
29083]
gi|197716600|gb|EDY60634.1| endonuclease/exonuclease/phosphatase [Streptomyces sviceus ATCC
29083]
Length = 305
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 28/118 (23%), Gaps = 6/118 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ ++L + + P ++ GDFN + + D D + +
Sbjct: 193 ERSAQFLSRRIAE-FDRTSPVLVTGDFNAEAHDNRAYDTLLATGLVDTWDAAAERSRLYA 251
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R L ++ + S H P+
Sbjct: 252 TFHGYR-----PLTPDGDRIDWILATPGTTVQRAVINTFAMDGQFPSDHLPVQATLTL 304
>gi|91781453|ref|YP_556659.1| exodeoxyribonucleaseiii xth [Burkholderia xenovorans LB400]
gi|91685407|gb|ABE28607.1| ExodeoxyribonucleaseIII xth [Burkholderia xenovorans LB400]
Length = 259
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 31/142 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++ ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELAQEREVIVCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + Q E R ++ + + +
Sbjct: 177 WLTKLFDEVGYVDVFRTLDQRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGIASKAKR 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
R K S H PLT++YD
Sbjct: 235 TDVF--RDIKFSDHAPLTVDYD 254
>gi|83720785|ref|YP_440709.1| exodeoxyribonuclease III [Burkholderia thailandensis E264]
gi|167579381|ref|ZP_02372255.1| exodeoxyribonuclease III [Burkholderia thailandensis TXDOH]
gi|167617482|ref|ZP_02386113.1| exodeoxyribonuclease III [Burkholderia thailandensis Bt4]
gi|257140643|ref|ZP_05588905.1| exodeoxyribonuclease III [Burkholderia thailandensis E264]
gi|83654610|gb|ABC38673.1| exodeoxyribonuclease III [Burkholderia thailandensis E264]
Length = 256
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 44/144 (30%), Gaps = 31/144 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++K+ ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELKSKREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + E R ++ + + +
Sbjct: 177 WLTKLFDEVGYVDVFRTLDSRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAGTAKG 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFE 121
S R K S H PLT++YD++
Sbjct: 235 TSIF--RDIKFSDHAPLTVDYDYK 256
>gi|167771017|ref|ZP_02443070.1| hypothetical protein ANACOL_02371 [Anaerotruncus colihominis DSM
17241]
gi|167666687|gb|EDS10817.1| hypothetical protein ANACOL_02371 [Anaerotruncus colihominis DSM
17241]
Length = 250
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 11/121 (9%), Positives = 25/121 (20%), Gaps = 23/121 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
+ P V+ GD N I + + + +
Sbjct: 133 LDAKKPVVLCGDLNVAHQEIDLKNPKTNRRNAGFSDEERAKMTELLAGGFVDTFRALYPD 192
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ ++ F++ S HCP+ ++
Sbjct: 193 VTGAYTWWSYLRRARDTNAGW--RIDYFIVSERLRG--AVHDSRIRADVMGSDHCPVELD 248
Query: 118 Y 118
Sbjct: 249 L 249
>gi|162329924|pdb|2O3H|A Chain A, Crystal Structure Of The Human C65a Ape
Length = 285
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 157 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 215
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 216 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 272
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 273 GSDHCPITLYLAL 285
>gi|163868656|ref|YP_001609865.1| exodeoxyribonuclease III [Bartonella tribocorum CIP 105476]
gi|161018312|emb|CAK01870.1| exodeoxyribonuclease III [Bartonella tribocorum CIP 105476]
Length = 260
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 36/133 (27%), Gaps = 17/133 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
E L + P V+AGD+N + +Q++ G
Sbjct: 128 MERLYAHTKSLLAYEEPLVLAGDYNVIPTPLDAKKPQEWNQDALFLQKTRKAFQRILHLG 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS-FSIVSYDQSDLDTRRS-KL 108
L ++ ++ + L+ + S + R K
Sbjct: 188 LYDAIRNVTDTPSFSFWDFQAGAWPKNNGIRIDHLLLSPEAVDRLICAHSQTEVRGYPKP 247
Query: 109 STHCPLTIEYDFE 121
S H P+ I +
Sbjct: 248 SDHVPVWIHLNIN 260
>gi|15599104|ref|NP_252598.1| Extracelullar DNA degradation protein, EddB [Pseudomonas aeruginosa
PAO1]
gi|9950092|gb|AAG07296.1|AE004808_6 Extracelullar DNA degradation protein, EddB [Pseudomonas aeruginosa
PAO1]
Length = 779
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 38/139 (27%), Gaps = 21/139 (15%)
Query: 3 SQQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ + L W D +I GD N + L+ R +
Sbjct: 635 ARAAQALVGWLAGDPTGAKEPDRLIIGDLNSYAKEDPVN--VIRSAGYTDLVARQAGAGK 692
Query: 61 STCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDT 103
V LD+ + + + + ++ Y+ S +
Sbjct: 693 GYSYVFSGQSGYLDHALANASLARQVRGAVEWHINADEPRVLDYNVEFKTPRQQDSLYNA 752
Query: 104 RRSKLSTHCPLTIEYDFEK 122
+ S H P+ I D +
Sbjct: 753 EPYRASDHDPVVIGIDLRR 771
>gi|329113350|ref|ZP_08242131.1| Exodeoxyribonuclease III [Acetobacter pomorum DM001]
gi|326697175|gb|EGE48835.1| Exodeoxyribonuclease III [Acetobacter pomorum DM001]
Length = 245
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 22/136 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------DDFWQKM 46
E + +W + V+ GDFN + + Q
Sbjct: 111 VEEVTEWFQSR--PLNRTVLVGDFNIAPLEHDVWSHKQLLKIVSHTPPETERLNRWLQTG 168
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
D + P E++ RN+ D+ D ++
Sbjct: 169 FVDAMRHFVPPEEKLYTWWSYRNRDWKKSNRGRRLDHVWMTPDLLPNLHGMTVVREARDW 228
Query: 106 SKLSTHCPLTIEYDFE 121
S H P+ +++
Sbjct: 229 EGPSDHVPVVVDFSLS 244
>gi|319954572|ref|YP_004165839.1| endonuclease/exonuclease/phosphatase [Cellulophaga algicola DSM
14237]
gi|319423232|gb|ADV50341.1| Endonuclease/exonuclease/phosphatase [Cellulophaga algicola DSM
14237]
Length = 279
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 8/111 (7%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ P V+ GDFN + +D + + + +
Sbjct: 175 IKEVNTKDYPVVLTGDFNLEPTDEVIATVKNVLIDAKEVAHLTFGPEGTF-------NAF 227
Query: 73 LDYFVIDRDNKNFLIDNSFSIVS-YDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ R I + V+ Y S H P+ IE++ ++
Sbjct: 228 KFTTAVKRRIDYIFIAPNQVNVTKYAVLSDSKDLKYPSDHLPVYIEFEIKR 278
>gi|237786239|ref|YP_002906944.1| exodeoxyribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
gi|237759151|gb|ACR18401.1| exodeoxyribonuclease III [Corynebacterium kroppenstedtii DSM 44385]
Length = 262
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 33/133 (24%), Gaps = 19/133 (14%)
Query: 4 QQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFW---------------QKM 46
+ + ++ +A + + GD+N + D + +
Sbjct: 130 RFLDAVRNYAATAVDNDPELRLALVGDWNIAPHDTDVWDPQFFVGHTQVTPRERNALTAL 189
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ +G + D + + + +
Sbjct: 190 EDEGFTDVTHN--SGYTYWDYTAGRFGRNQGMRIDVQWASPALAENAGEVSVYKDERAAK 247
Query: 107 KLSTHCPLTIEYD 119
S H PL ++YD
Sbjct: 248 GSSDHAPLIVDYD 260
>gi|229010475|ref|ZP_04167677.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides DSM 2048]
gi|228750673|gb|EEM00497.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides DSM 2048]
Length = 788
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 47/123 (38%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKALEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + + I + + S++ ++S H P+ ++ D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPYTIVDPVHL----NSNIMKEHGRVSDHDPVLVQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|187922338|ref|YP_001893980.1| exodeoxyribonuclease III Xth [Burkholderia phytofirmans PsJN]
gi|187713532|gb|ACD14756.1| exodeoxyribonuclease III Xth [Burkholderia phytofirmans PsJN]
Length = 259
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 31/142 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++ ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELSQEREVIVCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + Q E R ++ + + +
Sbjct: 177 WLTKLFDEVGYVDVFRTLDQRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGIASKAKR 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
R K S H PLT++YD
Sbjct: 235 TDVF--RDIKFSDHAPLTVDYD 254
>gi|32475225|ref|NP_868219.1| exodeoxyribonuclease [Rhodopirellula baltica SH 1]
gi|32445766|emb|CAD78497.1| exodeoxyribonuclease [Rhodopirellula baltica SH 1]
Length = 256
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 28/130 (21%), Gaps = 23/130 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + + P + GD N I + + +
Sbjct: 131 EAFLDYVKK-LNRRKPVLFCGDVNCAHKEIDLANPKANRKNAGFSDQERAGLDAVTEAGF 189
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+F R+ + F + +F
Sbjct: 190 IDSFRQFHDGPGHYSWWTYRSDARARNIGW--RLDYFWVAKNFW--DRVADARIRCEIHG 245
Query: 109 STHCPLTIEY 118
S HCP+ +
Sbjct: 246 SDHCPVELTL 255
>gi|332829539|gb|EGK02188.1| exodeoxyribonuclease III [Dysgonomonas gadei ATCC BAA-286]
Length = 254
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 29/128 (22%), Gaps = 22/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
+ ++ K +I GD+N I + D
Sbjct: 131 HFINELRKERPQILICGDYNICHKPIDISHPERHTKDSGFLPEERQWFDEYIATGLIDTF 190
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + + R + +I S HC
Sbjct: 191 RVYDESPDKYSWWSYRAGARGKNLGW--RIDYHIISEEAR--PRLNGAAILSDIDFSDHC 246
Query: 113 PLTIEYDF 120
P+ +E DF
Sbjct: 247 PIVVEMDF 254
>gi|329850335|ref|ZP_08265180.1| exodeoxyribonuclease III [Asticcacaulis biprosthecum C19]
gi|328840650|gb|EGF90221.1| exodeoxyribonuclease III [Asticcacaulis biprosthecum C19]
Length = 262
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 31/134 (23%), Gaps = 22/134 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFWQKMDP 48
E L A Q + +I GDFN + +
Sbjct: 128 ERLHARAAQLLTLEEATIITGDFNIIPTKADCWKESVWLDDALYQPAVRQAYQGLKNLGY 187
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR--- 105
P E + + I D+ + + R
Sbjct: 188 TDAFDVMPPEGNRYTFWDYQAGAWQKNEGIRIDHHLLSPQAADRLNGLVIHKDTRGRTHD 247
Query: 106 -SKLSTHCPLTIEY 118
+K S H P+ IE
Sbjct: 248 EAKPSDHVPVEIEL 261
>gi|313620750|gb|EFR92007.1| endonuclease/exonuclease/phosphatase family protein [Listeria
innocua FSL S4-378]
Length = 257
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 4/105 (3%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
I +P ++ GDFN + + + D + + + L
Sbjct: 156 LIAENLPVILLGDFNTEPETPTYNFITKKYQDAQ---LISQTPIKGPIGSFHDFQP-LRP 211
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ F + SY S H P+T ++
Sbjct: 212 ENELEKIDYIFVSKEFRVHSYKTITDQVDGCSASDHFPVTATLEW 256
>gi|302560173|ref|ZP_07312515.1| exodeoxyribonuclease III [Streptomyces griseoflavus Tu4000]
gi|302477791|gb|EFL40884.1| exodeoxyribonuclease III [Streptomyces griseoflavus Tu4000]
Length = 276
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 22/133 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
LK ++ G V+ GD+N +
Sbjct: 140 LKGLRERAAADGREVVVCGDWNIAHEKADLKNWRGNTKSSGFLPEEREWLSRVLDPADGG 199
Query: 50 --GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
++ + R ++ + D + V T
Sbjct: 200 YVDVVRALHPDVDGPYSWWSYRGRAFDNDTGWRIDLAVATPGLAGRAVKAYVERAATHAE 259
Query: 107 KLSTHCPLTIEYD 119
+ S H P+T+ ++
Sbjct: 260 RWSDHAPVTVVFE 272
>gi|238061691|ref|ZP_04606400.1| hypothetical protein MCAG_02657 [Micromonospora sp. ATCC 39149]
gi|237883502|gb|EEP72330.1| hypothetical protein MCAG_02657 [Micromonospora sp. ATCC 39149]
Length = 457
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/121 (9%), Positives = 29/121 (23%), Gaps = 7/121 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKI-NSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + ++ + G+P V+ GDFN D ++ +
Sbjct: 200 ERAAQLIRARLAA-LAPGLPIVLTGDFNSGPWAGSPVYDVLVRQAGLVDTWTAAAATGPA 258
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR-RSKLSTHCPLTIEYDF 120
+ L ++ + + + S H P+
Sbjct: 259 YG----TYHNYQPLVAGGARIDWILATRGVTVSAAAINTYGSGSGQFPSDHLPVQARLRL 314
Query: 121 E 121
Sbjct: 315 P 315
>gi|209522354|ref|ZP_03270972.1| exodeoxyribonuclease III Xth [Burkholderia sp. H160]
gi|209497213|gb|EDZ97450.1| exodeoxyribonuclease III Xth [Burkholderia sp. H160]
Length = 260
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 31/142 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++ T ++ GD N I +
Sbjct: 119 RQQAKF--RFMDEFMPHLAELATEREVIVCGDVNIVHKEIDIKNWKGNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + E R ++ + + +
Sbjct: 177 WLDKLFDEVGYVDVFRTLDPRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGIASKAKR 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
R K S H PLT++YD
Sbjct: 235 TDVF--RDIKFSDHAPLTVDYD 254
>gi|72161943|ref|YP_289600.1| AP endonuclease [Thermobifida fusca YX]
gi|71915675|gb|AAZ55577.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Thermobifida fusca YX]
Length = 267
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 31/128 (24%), Gaps = 20/128 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------- 48
L + + G + GD+N + + +
Sbjct: 136 LVRRRTEVEAQGRELAVCGDWNIAHQEADLKNWRGNRKNSGFLPEERQWLSRVYEEAGYV 195
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
D + P + R ++ + D + + + +
Sbjct: 196 DVVRALHPDQDGPYTWWSYRGRAFDNDAGWRIDLQVATPGLAARAQEAWVERAPSHDQRW 255
Query: 109 STHCPLTI 116
S H P+T+
Sbjct: 256 SDHAPVTV 263
>gi|289450732|ref|YP_003475042.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289185279|gb|ADC91704.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 251
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 26/137 (18%)
Query: 1 MLSQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------- 49
++ +Q W + + Q+++ P +I GD N I + + +P
Sbjct: 117 LVYRQS-WERDFLTYLQELRRVKPVIICGDLNVAHREIDLKNPAANRKNPGFTDEERAEF 175
Query: 50 ---------GLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
F EK R + D + + + S
Sbjct: 176 QTLLDAGFVDTFRYFYPEKPEEYSWWSYRFNARSRNAGWRIDYFLVSNELTDRLQSASIH 235
Query: 100 DLDTRRSKLSTHCPLTI 116
S HCP+ +
Sbjct: 236 QEIFG----SDHCPVEL 248
>gi|42784261|ref|NP_981508.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus ATCC 10987]
gi|42740192|gb|AAS44116.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus ATCC
10987]
Length = 327
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G ++ GD+N+ ++++ +D + K P+ L+ +
Sbjct: 201 IRKQQVEFLKEYMNKHYKNGDYVIMGGDWNQLLSNVQLSDPKFVKERPEWLVELPKDFTD 260
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 261 GGFKWAVDSSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 317
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 318 NPVSAVFKLK 327
>gi|320094390|ref|ZP_08026175.1| exodeoxyribonuclease III [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319978676|gb|EFW10234.1| exodeoxyribonuclease III [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 275
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 20/135 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM--------------- 46
L + G + + G V+ GDFN + +
Sbjct: 137 LPRIGARMAELLASAASGGEQAVVCGDFNVVRSRADIKNWTSNHNKRAGVLDEEIAFLNR 196
Query: 47 -----DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
D + Q + R ++ + D + + + S+
Sbjct: 197 WVEEGWHDVVRDLAGQVQGPYSWWTWRGQAFDNDAGWRLDYQFATPGLARAARSFTIGRA 256
Query: 102 DTRRSKLSTHCPLTI 116
+ + S H P+ +
Sbjct: 257 PSYDQRFSDHAPVGV 271
>gi|294678851|ref|YP_003579466.1| exodeoxyribonuclease III [Rhodobacter capsulatus SB 1003]
gi|294477671|gb|ADE87059.1| exodeoxyribonuclease III-2 [Rhodobacter capsulatus SB 1003]
Length = 262
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 11/126 (8%), Positives = 23/126 (18%), Gaps = 22/126 (17%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPDGLLIRFP 56
+ ++ GD N + +
Sbjct: 138 HAQRPDRAILVGDLNIAPREDDVWNHKALLKIVSHTPIEVEHLAAAQDAGGWVDVTRADI 197
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSKLSTHCPL 114
E + R+ D R + + + S H P+
Sbjct: 198 PEGQLYSWWSYRSPDW-DGADKGRRLDHIWATPDIAGAAHGSRILRAARGWEQPSDHAPV 256
Query: 115 TIEYDF 120
+D
Sbjct: 257 FATFDL 262
>gi|224534803|ref|ZP_03675375.1| exodeoxyribonuclease III [Borrelia spielmanii A14S]
gi|224514051|gb|EEF84373.1| exodeoxyribonuclease III [Borrelia spielmanii A14S]
Length = 255
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 22/128 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD--G 50
++ D + G VI GDFN I T + ++
Sbjct: 127 VENLVDSFVNGGKNVVICGDFNIAHTKIDLISPDSNRDSPGYYIEETTWLDRFLNKGYVD 186
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +E R ++ F+++ F + L + S
Sbjct: 187 TFRIFNKEPGYYTWWSYRTRAREKNMGW--RIDYFIVNEFFKRN--VKKSLILDKVMGSD 242
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 243 HCPVCLEL 250
>gi|163757064|ref|ZP_02164169.1| hypothetical protein KAOT1_04125 [Kordia algicida OT-1]
gi|161322964|gb|EDP94308.1| hypothetical protein KAOT1_04125 [Kordia algicida OT-1]
Length = 277
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 23/105 (21%), Gaps = 7/105 (6%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
P + GDFN + N D + + +
Sbjct: 175 IKSANTENYPVFLTGDFNMEPNHESIDHITQSLKDSKKIAALDFGPEGTF-------NGF 227
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ R + + Y S H P+ IE
Sbjct: 228 HFDKPVTRRIDYIFVSKHVKVHKYAVLSDHWNMQYPSDHLPVLIE 272
>gi|116254288|ref|YP_770126.1| exodeoxyribonuclease III [Rhizobium leguminosarum bv. viciae 3841]
gi|115258936|emb|CAK10045.1| putative exodeoxyribonuclease III [Rhizobium leguminosarum bv.
viciae 3841]
Length = 267
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 30/131 (22%), Gaps = 21/131 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDG 50
K + ++ GD N + D
Sbjct: 137 KLLKANGEANTSAILVGDLNIAPLEHDVWSHKQLLKIVSHTPVETEGLLEVMKRGAWLDL 196
Query: 51 LLIRFPQEKESTCNVIKRNKSS-LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ P+ ++ R K D+ D + + + S
Sbjct: 197 MRQHVPENEKLYTWWSYRAKDWEAADRGRRLDHIWSSSDLGPHLKRIEILKEARGWDRPS 256
Query: 110 THCPLTIEYDF 120
H P+T +DF
Sbjct: 257 DHVPVTAHFDF 267
>gi|28493711|ref|NP_787872.1| exodeoxyribonuclease III [Tropheryma whipplei str. Twist]
gi|28572897|ref|NP_789677.1| exodeoxyribonuclease III [Tropheryma whipplei TW08/27]
gi|28411030|emb|CAD67415.1| exodeoxyribonuclease III [Tropheryma whipplei TW08/27]
gi|28476753|gb|AAO44841.1| exodeoxyribonuclease III [Tropheryma whipplei str. Twist]
Length = 269
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 38/136 (27%), Gaps = 23/136 (16%)
Query: 7 EWLKKW---ADQKIKTGIPFVIAGDFNRKINSIGDTDD-----------------FWQKM 46
+WL+ + I T VIAGDFN + D F+ +
Sbjct: 134 DWLEGFATHIRGVINTEPNLVIAGDFNIVLFDSDSNDPRVQTDTDVFRTPHERQAFYNLL 193
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR-- 104
D + P E E R + D+ + S+ +
Sbjct: 194 DLGLRDLVRPTEPEGFTFWDYRAGRFQKNEGLRIDHILGTDPIANSVRFAKIHHEQRKGD 253
Query: 105 -RSKLSTHCPLTIEYD 119
S H P+ IE
Sbjct: 254 EGKTPSDHVPVMIELR 269
>gi|226942126|ref|YP_002797200.1| ExoA [Laribacter hongkongensis HLHK9]
gi|226717053|gb|ACO76191.1| ExoA [Laribacter hongkongensis HLHK9]
Length = 257
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 22/133 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+ + D G V+ GD+N N I + +
Sbjct: 126 RFMDAFLPHLDALRTEGRDIVLCGDWNIAHNEIDLKNWKGNLKNSGFLPEERAWIGARFA 185
Query: 50 ----GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ + E +R ++ + + QS +
Sbjct: 186 EGWADVWRQLYPEAPGYTWWSQRGQAYAKDVGW--RIDYQIATAGLAA--RAQSAFVYKD 241
Query: 106 SKLSTHCPLTIEY 118
++ S H PL ++Y
Sbjct: 242 TRFSDHAPLVVDY 254
>gi|187251652|ref|YP_001876134.1| exodeoxyribonuclease III Xth [Elusimicrobium minutum Pei191]
gi|186971812|gb|ACC98797.1| Exodeoxyribonuclease III Xth [Elusimicrobium minutum Pei191]
Length = 255
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 31/126 (24%), Gaps = 22/126 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGLLIR 54
QK+ ++ GD N + +
Sbjct: 134 LTQKLMKQKTVIVCGDVNTAHKETDLARPKENEGNTGFLPKERAWLDKFFENGLTDTFRL 193
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
F ++ + K+ F+ID ++ + S HCP+
Sbjct: 194 FTKDGGHYTWWDYKTKARERNVGW--RIDYFMIDTLSKNK--VKNSYMLPEVQGSDHCPI 249
Query: 115 TIEYDF 120
+E +
Sbjct: 250 ALEINL 255
>gi|149922823|ref|ZP_01911246.1| exodeoxyribonuclease III [Plesiocystis pacifica SIR-1]
gi|149816290|gb|EDM75794.1| exodeoxyribonuclease III [Plesiocystis pacifica SIR-1]
Length = 280
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 30/131 (22%), Gaps = 22/131 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDP 48
+ + ++K + G ++ GDFN +I W +
Sbjct: 147 RAVFELVERKRRGGYRVLVMGDFNTAHEAIDLARPKQNVKTSGFLPEEREELDRWIRAGW 206
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+R + L + +
Sbjct: 207 IDTFRSLEPGPGHYSWWSQRGTARERNVGW--RIDYVLASPNVEPFLREA--FIWPEVPG 262
Query: 109 STHCPLTIEYD 119
S HCP+ + D
Sbjct: 263 SDHCPVGVRLD 273
>gi|95930349|ref|ZP_01313086.1| exodeoxyribonuclease III [Desulfuromonas acetoxidans DSM 684]
gi|95133601|gb|EAT15263.1| exodeoxyribonuclease III [Desulfuromonas acetoxidans DSM 684]
Length = 270
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/141 (11%), Positives = 29/141 (20%), Gaps = 27/141 (19%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TDDFWQK 45
L++ + ++ GD N + + Q
Sbjct: 130 RDLRQMLENYEAKNDALLVVGDMNVAPLAEDIGIGPDNEKRWLAQGKSCFLPEERAWLQS 189
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQS 99
+ GL F R++ L +
Sbjct: 190 VMDWGLHDSFRHCYPDVDDRFSWFDYRSRGFERDPKRGLRIDLILASQALISRCQDAGID 249
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
K S HCP+ E+
Sbjct: 250 YDIRAMEKPSDHCPIWAEFSL 270
>gi|168036056|ref|XP_001770524.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678232|gb|EDQ64693.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 363
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 28/128 (21%), Gaps = 24/128 (18%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------ 49
L + ++ P ++ GD N I D +
Sbjct: 237 ALSSHLRE-LEKKKPVILTGDLNCAHEDIDINDPAGNRKSAGFTDEERESFKTNFLDHGF 295
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + R S FL+ S S
Sbjct: 296 VDTFRKQHPNAVAYTYWGYRTASRPKNKGW--RLDYFLVSGSLSEN--VHDSYTIPDVGG 351
Query: 109 STHCPLTI 116
S HCP+ +
Sbjct: 352 SDHCPIAL 359
>gi|83941780|ref|ZP_00954242.1| exodeoxyribonuclease III, putative [Sulfitobacter sp. EE-36]
gi|83847600|gb|EAP85475.1| exodeoxyribonuclease III, putative [Sulfitobacter sp. EE-36]
Length = 262
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 27/133 (20%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W ++ GD N D +
Sbjct: 133 MRDWF--HGDKPEKSILVGDLNIAPREDDVWDHKKLLKVVSHTPIEVEKLAETQDAGGFV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ + + R K D R + + S K
Sbjct: 191 DVTRQDIPQGNLYSWWSYRAKDW-DAADKGRRLDHVWATPDISGAAHSSRVLRDARGWEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFATFDL 262
>gi|327278208|ref|XP_003223854.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Anolis carolinensis]
Length = 314
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 32/126 (25%), Gaps = 20/126 (15%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLL 52
+ + + P ++ GD N I + + K+ +G +
Sbjct: 188 AFRSYLKG-LAARKPLILCGDLNVAHEEIDLKNPKGNKKNAGFTPEERAGFTKLLEEGFV 246
Query: 53 IRFPQ--EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + + F++ + S
Sbjct: 247 DTFRHLYPDTAYAYTFWTYMMNARSKNVGWRLDYFVVSKDLQESIC--DSKIRSTALGSD 304
Query: 111 HCPLTI 116
HCP+T+
Sbjct: 305 HCPITL 310
>gi|313894410|ref|ZP_07827975.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441234|gb|EFR59661.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
Length = 251
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 29/133 (21%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P ++ GD N I + + +
Sbjct: 124 DAFRNYLLE-LDKKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTELLGAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ E K+ D I
Sbjct: 183 TDTFRHLYPDAIEQYSWWSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIHQQIFG--- 239
Query: 108 LSTHCPLTIEYDF 120
S HCP+ ++ D
Sbjct: 240 -SDHCPVELDIDL 251
>gi|190571508|ref|YP_001975866.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018910|ref|ZP_03334718.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190357780|emb|CAQ55235.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995861|gb|EEB56501.1| exodeoxyribonuclease III [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 260
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 32/125 (25%), Gaps = 18/125 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDG 50
L + +K +IAGD+N ++ I D +
Sbjct: 131 LYERMGTLLKNEELTIIAGDYNVALDEIDVFDSNLLNGQVCFHIKEREKLRAILNLGFKD 190
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + S + + D+ + + + D + S
Sbjct: 191 AFRISHLNLQQFTWWHYQGNSLRNNQGMRIDHMLLSPQAADKLETCYIDDRLRKLENPSD 250
Query: 111 HCPLT 115
H P+
Sbjct: 251 HTPVV 255
>gi|83855258|ref|ZP_00948788.1| exodeoxyribonuclease III, putative [Sulfitobacter sp. NAS-14.1]
gi|83843101|gb|EAP82268.1| exodeoxyribonuclease III, putative [Sulfitobacter sp. NAS-14.1]
Length = 262
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 27/133 (20%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W ++ GD N D +
Sbjct: 133 MRDWF--HGDKPEKSILVGDLNIAPREDDVWDHKKLLKVVSHTPIEVEKLAETQDAGGFV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
+ + + R K D R + + S K
Sbjct: 191 DVTRQDIPQGNLYSWWSYRAKDW-DAADKGRRLDHVWATPDISGAAHSSRVLRDARGWEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFATFDL 262
>gi|332687227|ref|YP_004457001.1| exodeoxyribonuclease III [Melissococcus plutonius ATCC 35311]
gi|332371236|dbj|BAK22192.1| exodeoxyribonuclease III [Melissococcus plutonius ATCC 35311]
Length = 254
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 38/133 (28%), Gaps = 24/133 (18%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD-- 49
+ + + +K+ ++ GD N I + + +D
Sbjct: 125 AFRDYLIK-LKSKKQVILCGDLNVAHQPIDLKNWRTNQHSAGFSPEEREKMTKLLDNGFI 183
Query: 50 GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F +KE R + + F++ ++ + +
Sbjct: 184 DTYRYFYPDKEGVYSWWSYRFNARKNNAGW--RIDYFIVSDNLKPTLKEATIYT--EITG 239
Query: 109 STHCPLTIEYDFE 121
S HCP+ +E D
Sbjct: 240 SDHCPVGVELDLS 252
>gi|254796778|ref|YP_003081615.1| exodeoxyribonuclease III [Neorickettsia risticii str. Illinois]
gi|254590017|gb|ACT69379.1| exodeoxyribonuclease III [Neorickettsia risticii str. Illinois]
Length = 260
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 12/132 (9%), Positives = 28/132 (21%), Gaps = 19/132 (14%)
Query: 7 EWLKKWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMD 47
+ L + + ++ GD N I D +
Sbjct: 127 DALARRIHCYLLNNNDIILLGGDMNAAPEDIDVYDHVKLDGCTGFHIEERSKLRELLNLG 186
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
K+ R + D+ + ++ ++
Sbjct: 187 LFDTFRMKYPTKQEFSWWDYRGGGLQRNEGMRIDHILASAEGMDHLLDCYILKELRHIAR 246
Query: 108 LSTHCPLTIEYD 119
S H P+ +
Sbjct: 247 PSDHVPVVCVLN 258
>gi|170726264|ref|YP_001760290.1| endonuclease/exonuclease/phosphatase [Shewanella woodyi ATCC 51908]
gi|169811611|gb|ACA86195.1| Endonuclease/exonuclease/phosphatase [Shewanella woodyi ATCC 51908]
Length = 940
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/141 (12%), Positives = 40/141 (28%), Gaps = 25/141 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE--S 61
+ + + W + P ++ GD N + G F + +
Sbjct: 647 RAAQAVGTWLAAEYPQ-APVLLIGDLNAYAQENP-----LTALKDAGFTELFDHLDKVGA 700
Query: 62 TCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDTR 104
V LD+ + + + + + I+ Y++ +
Sbjct: 701 YSYVFSGETGQLDHALANSELIDSVVDVTEWHINTDEPRILDYNEEFKSASQIENLYSDS 760
Query: 105 RSKLSTHCPLTIEYDFEKGNV 125
+ S H P+ + E N+
Sbjct: 761 AYRSSDHDPVVVSLLLEAANI 781
>gi|117620950|ref|YP_857462.1| exodeoxyribonuclease III [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117562357|gb|ABK39305.1| exodeoxyribonuclease III [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 268
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/135 (10%), Positives = 29/135 (21%), Gaps = 25/135 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
E L+++ + V+ GD N + +
Sbjct: 131 EDLQRYLETHHTPSDQLVLIGDMNISPTDLDIGIGEANRKRWLRDGKCSFLPIEREWMER 190
Query: 43 WQKMDPDGLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ E E R++ + + D ++
Sbjct: 191 LKGFGLTDTFRAANPTECERFSWFDYRSRGFDENRGLRIDLIMASDALKDTVTETGIDYE 250
Query: 102 DTRRSKLSTHCPLTI 116
K S H P+
Sbjct: 251 LRGIDKPSDHAPIWA 265
>gi|255263312|ref|ZP_05342654.1| exodeoxyribonuclease III [Thalassiobium sp. R2A62]
gi|255105647|gb|EET48321.1| exodeoxyribonuclease III [Thalassiobium sp. R2A62]
Length = 262
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 25/126 (19%), Gaps = 22/126 (17%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPDGLLIRFP 56
+ ++ GD N D D +
Sbjct: 138 RAAPPKRAILVGDLNIAPREDDVWDHKKLLKIISHTPVEVEAFNAVMAAGDWVDVTRADI 197
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--QSDLDTRRSKLSTHCPL 114
E R K D R + + + + K S H P+
Sbjct: 198 PEGLLYSWWSYRAKDW-DAADKGRRLDHVWATSDIAASASGSRVIRYVRGWEKPSDHAPV 256
Query: 115 TIEYDF 120
+D
Sbjct: 257 FATFDL 262
>gi|157803480|ref|YP_001492029.1| exodeoxyribonuclease III [Rickettsia canadensis str. McKiel]
gi|157784743|gb|ABV73244.1| exodeoxyribonuclease III [Rickettsia canadensis str. McKiel]
Length = 273
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/138 (10%), Positives = 32/138 (23%), Gaps = 23/138 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKM 46
+++W +I GD N + +
Sbjct: 126 VRLMQEWLTVNRTKNDKIIIVGDLNIAPHEHDVWSSRQLRNVISHTDIERSLLVGLQNSL 185
Query: 47 DPDGLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDT 103
F +++ RN R + + N+ + +
Sbjct: 186 GFIDSSRHFISLDEKFYTWWSYRNIDWKK-SNRGRRLDHIWVSNNLKDALFSINLLSEAR 244
Query: 104 RRSKLSTHCPLTIEYDFE 121
S H P + ++F+
Sbjct: 245 DWVPPSDHVPYFVNFNFD 262
>gi|6980832|pdb|1DEW|A Chain A, Crystal Structure Of Human Ape1 Bound To Abasic Dna
gi|6980833|pdb|1DEW|B Chain B, Crystal Structure Of Human Ape1 Bound To Abasic Dna
Length = 279
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 151 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 209
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 210 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 266
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 267 GSDHCPITLYLAL 279
>gi|296445860|ref|ZP_06887812.1| exodeoxyribonuclease III Xth [Methylosinus trichosporium OB3b]
gi|296256688|gb|EFH03763.1| exodeoxyribonuclease III Xth [Methylosinus trichosporium OB3b]
Length = 266
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 35/133 (26%), Gaps = 21/133 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKM 46
+ +K+W ++ T V+ GD N F
Sbjct: 132 DEMKEWVTRERITDGRVVLVGDLNIAPLEQDVWSHKALLQTVSHTPVEVQKLGAVFDAGR 191
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
D + P++++ R D+ S ++ +
Sbjct: 192 WIDAMRRFVPEQEKLYTWWSYRASDWTKSDRGRRLDHVWTSQALSTELLEMNVLREARSW 251
Query: 106 SKLSTHCPLTIEY 118
+ S H P+T+
Sbjct: 252 QRPSDHVPVTVAL 264
>gi|262383745|ref|ZP_06076881.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262294643|gb|EEY82575.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 287
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 5/110 (4%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC--NVIKRNKS 71
+K+ +P ++ GDFN + DP L +
Sbjct: 181 AKKLSENLPIIVTGDFNAVPSDEPIQ-VLTNPSDPRHLTHSRTIAGFTYGPEWTFHDFGK 239
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + ++ + S HCP+ E
Sbjct: 240 IPYDKREW--IDYIFVKGNIKVLRHGVLTETLNNLFPSDHCPVISTLILE 287
>gi|257460806|ref|ZP_05625907.1| exodeoxyribonuclease III [Campylobacter gracilis RM3268]
gi|257442137|gb|EEV17279.1| exodeoxyribonuclease III [Campylobacter gracilis RM3268]
Length = 252
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 30/128 (23%), Gaps = 23/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
+A + G+ + GD N I +
Sbjct: 128 AYARSLAEQGLGVIFCGDVNTAHREIDLANPKANSKTSGFLPIERAWLDEVEAAGFVDTF 187
Query: 53 IRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E +++ R + F I + S + S H
Sbjct: 188 RAVHGELRDAYSWWSYRFNARAKNVGW--RIDYFFISANLR--SQLKDAFILSDVMGSDH 243
Query: 112 CPLTIEYD 119
CP+ IE +
Sbjct: 244 CPVGIEIE 251
>gi|224282700|ref|ZP_03646022.1| exodeoxyribonuclease [Bifidobacterium bifidum NCIMB 41171]
gi|313139858|ref|ZP_07802051.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313132368|gb|EFR49985.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 285
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 20/126 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI-------------------- 53
D+ + G V+ GDFN + + L
Sbjct: 159 DEASRGGRQAVLCGDFNIAHTPLDIKNAKANIKHAGFLPAERAYVDRWLGEYEFVDVIRS 218
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ +R ++ + D + + + + + + ++ S H P
Sbjct: 219 LAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETARGFVIDKAPSYDARWSDHAP 278
Query: 114 LTIEYD 119
LTI YD
Sbjct: 279 LTITYD 284
>gi|325105846|ref|YP_004275500.1| exodeoxyribonuclease III Xth [Pedobacter saltans DSM 12145]
gi|324974694|gb|ADY53678.1| exodeoxyribonuclease III Xth [Pedobacter saltans DSM 12145]
Length = 255
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 32/127 (25%), Gaps = 22/127 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLI 53
+A + T +I GD+N +I +
Sbjct: 133 YAADLMNTYPNLLICGDYNICHRAIDIHNPKSNANSSGFLPEEREWMERFINSGFIDTFR 192
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R + L+ ++ + L +K S HCP
Sbjct: 193 HLNPDPHHYTWWSYRAGARAKNLGW--RIDYHLLSSTMVENIKRAAILP--EAKHSDHCP 248
Query: 114 LTIEYDF 120
+ +E +
Sbjct: 249 ILLELQW 255
>gi|21231446|ref|NP_637363.1| exodeoxyribonuclease III [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66768500|ref|YP_243262.1| exodeoxyribonuclease III [Xanthomonas campestris pv. campestris
str. 8004]
gi|21113117|gb|AAM41287.1| exodeoxyribonuclease III [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66573832|gb|AAY49242.1| exodeoxyribonuclease III [Xanthomonas campestris pv. campestris
str. 8004]
Length = 356
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 29/131 (22%), Gaps = 18/131 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ L + A + P + GDFN D + ++ G
Sbjct: 131 QRLLRHAATLVALPHPVALIGDFNVVPTDAHIYDPKGWRKDALLQPESRAAYAQLLAQGW 190
Query: 52 LI---RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + D+ + + K
Sbjct: 191 TDSLQAIHGDAPVYTFWDYFRQHFARDRGLRIDHLLLNRTLAAGLRDAGVGKWVRALEKA 250
Query: 109 STHCPLTIEYD 119
S H P I D
Sbjct: 251 SDHAPTWITVD 261
>gi|301311917|ref|ZP_07217839.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
gi|300830019|gb|EFK60667.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
Length = 287
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 5/110 (4%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC--NVIKRNKS 71
+K+ +P ++ GDFN + DP L +
Sbjct: 181 AKKLSENLPIIVTGDFNAVPSDEPIQ-VLTNPSDPRHLTHSRTIAGFTYGPEWTFHDFGK 239
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + ++ + S HCP+ E
Sbjct: 240 IPYDKREW--IDYIFVKGNIKVLRHGVLTETLNNLFPSDHCPVISTLILE 287
>gi|259649286|dbj|BAI41448.1| exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
Length = 253
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 25/133 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQK 45
+Q +W + + ++ P V GD N I +D F ++
Sbjct: 120 RQ-QWDRDFLAYTNELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQ 178
Query: 46 MDPD--GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
++ F + + R + + F+ ++F Y Q
Sbjct: 179 LNSGFIDTFRHFYPDTVTYSWWSYRFHARANNAGW--RIDYFVASSAFQ--PYIQDAKIL 234
Query: 104 RRSKLSTHCPLTI 116
+ S HCP+ +
Sbjct: 235 TQIMGSDHCPVEL 247
>gi|284035454|ref|YP_003385384.1| exodeoxyribonuclease III Xth [Spirosoma linguale DSM 74]
gi|283814747|gb|ADB36585.1| exodeoxyribonuclease III Xth [Spirosoma linguale DSM 74]
Length = 254
Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 30/128 (23%), Gaps = 22/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
++ + K ++ GD+N N+I D K
Sbjct: 131 QFVQELRKERPKVIVVGDYNIAHNAIDIHDPVRNKNTTGFLPEERAWMDSWFGSGMTDGF 190
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ R + + + ++ + + HC
Sbjct: 191 RYKHPTDVAYSWWSYRAGARTNNKGW--RIDYASLTDNLR--DRIIDCAMLPDAVHADHC 246
Query: 113 PLTIEYDF 120
P+ + D
Sbjct: 247 PVCLNLDL 254
>gi|78067925|ref|YP_370694.1| exodeoxyribonuclease III xth [Burkholderia sp. 383]
gi|77968670|gb|ABB10050.1| Exodeoxyribonuclease III xth [Burkholderia sp. 383]
Length = 257
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 42/145 (28%), Gaps = 31/145 (21%)
Query: 3 SQQGEWLKKWADQK------IKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ +K ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAALKKKREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEERE 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + + E R ++ + + +
Sbjct: 177 WLTKLFDDVGYVDVFRTLDPRAEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAGTAKS 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFEK 122
S + K S H PLTI+YD++K
Sbjct: 235 TSIF--KDIKFSDHAPLTIDYDYKK 257
>gi|299753114|ref|XP_001833071.2| DNA-(apurinic or apyrimidinic site) lyase [Coprinopsis cinerea
okayama7#130]
gi|298410149|gb|EAU88760.2| DNA-(apurinic or apyrimidinic site) lyase [Coprinopsis cinerea
okayama7#130]
Length = 304
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/110 (12%), Positives = 30/110 (27%), Gaps = 7/110 (6%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ + + + P + GD N D D + + + + + R
Sbjct: 199 EAYIRE-LDKKKPVIWTGDLNVAPTEKED-DPERPQFVD--VWRKLHPDLQHYTYWSYRF 254
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+S D + + D S H PL ++ +
Sbjct: 255 QSREKGNGWRLDMFVLSTKLVDRVKKCEIRDEIYG---ASDHVPLIMDIE 301
>gi|257881925|ref|ZP_05661578.1| AP endonuclease [Enterococcus faecium 1,231,502]
gi|257890085|ref|ZP_05669738.1| AP endonuclease [Enterococcus faecium 1,231,410]
gi|258615657|ref|ZP_05713427.1| exodeoxyribonuclease [Enterococcus faecium DO]
gi|260558703|ref|ZP_05830892.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium C68]
gi|293563951|ref|ZP_06678361.1| exodeoxyribonuclease III [Enterococcus faecium E1162]
gi|294617705|ref|ZP_06697329.1| exodeoxyribonuclease III [Enterococcus faecium E1679]
gi|294623736|ref|ZP_06702567.1| exodeoxyribonuclease III [Enterococcus faecium U0317]
gi|257817583|gb|EEV44911.1| AP endonuclease [Enterococcus faecium 1,231,502]
gi|257826445|gb|EEV53071.1| AP endonuclease [Enterococcus faecium 1,231,410]
gi|260075162|gb|EEW63475.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Enterococcus faecium C68]
gi|291596042|gb|EFF27311.1| exodeoxyribonuclease III [Enterococcus faecium E1679]
gi|291596861|gb|EFF28081.1| exodeoxyribonuclease III [Enterococcus faecium U0317]
gi|291604080|gb|EFF33604.1| exodeoxyribonuclease III [Enterococcus faecium E1162]
Length = 250
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 31/131 (23%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + +K P ++ GD N I + + +
Sbjct: 124 EAFYNYL-ENLKKQKPVIVCGDLNVAHQKIDLKNWKTNQKNAGFTPEERAALSRLLDNGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +E R S + D D +
Sbjct: 183 IDTFRYFYPTQEGVYSWWNYRFNSRKNNAGWRIDYFLTSKDLEPGLADAKIHTDIMG--- 239
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 240 -SDHCPVELDL 249
>gi|242054695|ref|XP_002456493.1| hypothetical protein SORBIDRAFT_03g037240 [Sorghum bicolor]
gi|241928468|gb|EES01613.1| hypothetical protein SORBIDRAFT_03g037240 [Sorghum bicolor]
Length = 511
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 29/131 (22%), Gaps = 24/131 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + + ++ P ++ GD N I D +
Sbjct: 386 LGNYMKE-LEKSKPVILTGDLNCAHQEIDIHDPAGNRKSAGFTNEERESFETNFLSKGFV 444
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + R+ + FL+ S + S
Sbjct: 445 DTFRKQHPSVVAYSYWGYRHNARKTNKGW--RLDYFLVSESIAEK--VHDSYILPDISAS 500
Query: 110 THCPLTIEYDF 120
H PL +
Sbjct: 501 DHSPLGLVLKL 511
>gi|304314422|ref|YP_003849569.1| DNA lyase [Methanothermobacter marburgensis str. Marburg]
gi|302587881|gb|ADL58256.1| predicted DNA lyase [Methanothermobacter marburgensis str. Marburg]
Length = 257
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 32/125 (25%), Gaps = 22/125 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD------------------TDDFWQKMDPDGLLIR 54
+++ G VI GDFN I D + +
Sbjct: 136 VNRERDAGRNTVICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTFRM 195
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
F E R ++ D + + ++ S HCP+
Sbjct: 196 FNNESGQYTWWSYRTRARERNVGWRLDYFFVNEEFAKNVKRSWILSE----VMGSDHCPV 251
Query: 115 TIEYD 119
+E +
Sbjct: 252 GLEIE 256
>gi|295396429|ref|ZP_06806591.1| exodeoxyribonuclease III [Brevibacterium mcbrellneri ATCC 49030]
gi|294970731|gb|EFG46644.1| exodeoxyribonuclease III [Brevibacterium mcbrellneri ATCC 49030]
Length = 272
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 39/139 (28%), Gaps = 20/139 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQ 44
+ + +K+ Q + ++ GD N + + F+
Sbjct: 129 RFLDRMKERLPQLARHADYALVTGDLNVGHTELDIKNWKANQKKAGFLPEERAYFDEFFG 188
Query: 45 KMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + + E R K+ + D + + + +
Sbjct: 189 DLGWIDVHRKLSGEVPGPYTWWSMRGKAFDNDAGWRIDYHMATPNLAELASNAQVHRAAS 248
Query: 104 RRSKLSTHCPLTIEYDFEK 122
+ S H PL I+YD +
Sbjct: 249 WGERWSDHAPLVIDYDLPE 267
>gi|114329634|gb|ABI58270.1| exodeoxyribonuclease [Streptomyces coelicolor A3(2)]
Length = 267
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 22/133 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
LK+ ++ G V+ GD+N + K +
Sbjct: 134 LKELRERAAAQGREVVVCGDWNIAHREADLKNWRANKKNSGFLPEEREWLGRVLDPAEGG 193
Query: 50 --GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
++ + + R ++ + D + V T
Sbjct: 194 YVDVVRALHPDVEGPYSWWSYRGRAFGNDAGWRIDYHVSTPGLAAKAVKGYVERAATHAE 253
Query: 107 KLSTHCPLTIEYD 119
+ S H P+T+ Y+
Sbjct: 254 RWSDHAPVTVVYN 266
>gi|327278210|ref|XP_003223855.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Anolis carolinensis]
Length = 306
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 32/126 (25%), Gaps = 20/126 (15%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLL 52
+ + + P ++ GD N I + + K+ +G +
Sbjct: 180 AFRSYLKG-LAARKPLILCGDLNVAHEEIDLKNPKGNKKNAGFTPEERAGFTKLLEEGFV 238
Query: 53 IRFPQ--EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + + F++ + S
Sbjct: 239 DTFRHLYPDTAYAYTFWTYMMNARSKNVGWRLDYFVVSKDLQESIC--DSKIRSTALGSD 296
Query: 111 HCPLTI 116
HCP+T+
Sbjct: 297 HCPITL 302
>gi|228909564|ref|ZP_04073387.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
gi|228849853|gb|EEM94684.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
Length = 244
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 33/130 (25%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DG 50
+ + ++ + GD N I + + +P D
Sbjct: 120 RSYIK-RLDEKKTVIFCGDLNVAHKEIDLKNPKSNRKNPGFSDEEREKFTCILEEGFVDT 178
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+P ++ + R + F++ + S
Sbjct: 179 YRYLYPNQEGAYSWWSYRMGARAKNIGW--RLDYFVVSERMKDQITEVKINS--EVMGSD 234
Query: 111 HCPLTIEYDF 120
HCP+ + +F
Sbjct: 235 HCPVELYINF 244
>gi|222106133|ref|YP_002546924.1| hypothetical protein Avi_5005 [Agrobacterium vitis S4]
gi|221737312|gb|ACM38208.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 245
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 11/119 (9%)
Query: 3 SQQGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++Q L +W ++ P V+A D N NS + L +
Sbjct: 135 AEQARALLGVEWLGPLLEADAPIVVAADLNAVSNSKAFK------LLTARLADATKANLK 188
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
S R+K + + LI +I+ D R + S H PL +
Sbjct: 189 SDSL--SRSKPTFPSRFPFLRLDHVLISGGLNILEARVIDTPLAR-RASDHLPLLVTMQ 244
>gi|258507959|ref|YP_003170710.1| exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
gi|257147886|emb|CAR86859.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus GG]
Length = 252
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 25/133 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQK 45
+Q +W + + ++ P V GD N I +D F ++
Sbjct: 119 RQ-QWDRDFLAYTNELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQ 177
Query: 46 MDPD--GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
++ F + + R + + F+ ++F Y Q
Sbjct: 178 LNSGFIDTFRHFYPDTVTYSWWSYRFHARANNAGW--RIDYFVASSAFQ--PYIQDAKIL 233
Query: 104 RRSKLSTHCPLTI 116
+ S HCP+ +
Sbjct: 234 TQIMGSDHCPVEL 246
>gi|256822174|ref|YP_003146137.1| exodeoxyribonuclease III [Kangiella koreensis DSM 16069]
gi|256795713|gb|ACV26369.1| exodeoxyribonuclease III [Kangiella koreensis DSM 16069]
Length = 271
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 34/135 (25%), Gaps = 27/135 (20%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKES----------- 61
Q + ++ GD N I + ++ +G P+E+E
Sbjct: 137 QNDQGDHRTIVLGDINISPEDIDIGIGEPNRKRWLREGKCSFLPEEREWLQKILATGLYD 196
Query: 62 ------------TCNVIKRNKSSLDYFVIDRDNK--NFLIDNSFSIVSYDQSDLDTRRSK 107
R++ + V+ D +
Sbjct: 197 TYRTINPDVDDKFSWFDYRSRGFEREPRRGLRIDSVFACDWLNERAVASDIDYEIRSMER 256
Query: 108 LSTHCPLTIEYDFEK 122
S H P+ E+D +
Sbjct: 257 PSDHAPVWTEFDLNR 271
>gi|47567314|ref|ZP_00238027.1| endonuclease/exonuclease/phosphatase family protein, putative
[Bacillus cereus G9241]
gi|47555935|gb|EAL14273.1| endonuclease/exonuclease/phosphatase family protein, putative
[Bacillus cereus G9241]
Length = 327
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G ++ GD+N+ +++ +D + K P+ L+ +
Sbjct: 201 IRKQQVEFLKEYMNKHYKNGDYVIMGGDWNQLVSNAQLSDPKFVKERPEWLVELPKDFTD 260
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 261 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 317
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 318 NPVSAVFKLK 327
>gi|228951535|ref|ZP_04113640.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228808100|gb|EEM54614.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 788
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNYFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|229177605|ref|ZP_04304982.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus 172560W]
gi|228605795|gb|EEK63239.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus 172560W]
Length = 788
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNYFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|226359829|ref|YP_002777607.1| exodeoxyribonuclease [Rhodococcus opacus B4]
gi|226238314|dbj|BAH48662.1| putative exodeoxyribonuclease [Rhodococcus opacus B4]
Length = 304
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 31/135 (22%), Gaps = 20/135 (14%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDG--------------- 50
L + G ++ GD N +
Sbjct: 170 ARQLTRSRRTARARGRELLLMGDLNIAHTRHDVRNWRRSNQAEGYLPEEREWFDSIVSPR 229
Query: 51 -----LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ P +S ++ D + + V+
Sbjct: 230 TLVDVVRRHHPGVDGPYSWWSWLGQSFVNDVGWRIDYHLATPHLARAAVTAGTDRDPAAD 289
Query: 106 SKLSTHCPLTIEYDF 120
++S H P+ ++YDF
Sbjct: 290 RRMSDHAPVVVDYDF 304
>gi|206968309|ref|ZP_03229265.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus
AH1134]
gi|206737229|gb|EDZ54376.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus
AH1134]
Length = 788
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNYFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|118375590|ref|XP_001020979.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila]
gi|89302746|gb|EAS00734.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila
SB210]
Length = 396
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + +Q +K ++ GD N I + + P
Sbjct: 253 QNYLNQ-LKLKKNVILCGDLNVAHQEIDIANPKSNRNSPGFTIEERNSFSKFLESGWIDT 311
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E R K+ F+++ F + + S H
Sbjct: 312 FRFLYPETIKYSWWSVRTKARESNIGW--RIDYFVVNKEFKSSI--KDSMINNNIYGSDH 367
Query: 112 CPLTIEYDFE 121
CP+ + +
Sbjct: 368 CPVEFILNLD 377
>gi|229189268|ref|ZP_04316289.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus ATCC 10876]
gi|228594168|gb|EEK51966.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus ATCC 10876]
Length = 788
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N S + + ++
Sbjct: 673 QLAQEVNYFVQGIQKKNTNAPVVVLGDMNDFEFSKPLKTLEGTILKDMLNTV---PKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ + ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEQGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|213962631|ref|ZP_03390892.1| endonuclease/exonuclease/phosphatase [Capnocytophaga sputigena
Capno]
gi|213954626|gb|EEB65947.1| endonuclease/exonuclease/phosphatase [Capnocytophaga sputigena
Capno]
Length = 274
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 8/118 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + + + + K G ++ GDFN Q D +
Sbjct: 165 QSADLVLRKIKEIAKNGK-VILMGDFNLPTEHPAVQKIASQLYDTQLSPTNKTPNMGTF- 222
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + S + Y + S H P+ ++ +
Sbjct: 223 ------NAFKTDEPLKGHIDFIFVQKSIKVKQYKIIETRIDSLYPSDHLPVWVQLQLK 274
>gi|111017313|ref|YP_700285.1| exodeoxyribonuclease III [Rhodococcus jostii RHA1]
gi|110816843|gb|ABG92127.1| probable exodeoxyribonuclease III [Rhodococcus jostii RHA1]
Length = 304
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 20/135 (14%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
L + G ++ GD N + F + P
Sbjct: 170 ARQLTRSRRTARARGRELLLMGDLNIAHTRSDVRNWRRSNQAEGFLPEEREWFDSILSPR 229
Query: 50 GLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
L+ ++ +S ++ D D + + V+
Sbjct: 230 TLVDVVRRQHPGVDGPYSWWSWLGQSFVNDIGWRIDYHLATPDLARAAVTAGTDRDPVAD 289
Query: 106 SKLSTHCPLTIEYDF 120
++S H P+ ++YDF
Sbjct: 290 RRMSDHAPVVVDYDF 304
>gi|308162466|gb|EFO64862.1| Endonuclease/Exonuclease/phosphatase [Giardia lamblia P15]
Length = 322
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 29/131 (22%), Gaps = 22/131 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + K+ + G V GD N N I + +P
Sbjct: 192 KLISKYIGNLVAAGKDVVYCGDLNVAHNEIDLYNPKGNHFNPGFTDEERNAFSKLLDGHG 251
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ N F++ + LD S
Sbjct: 252 LIDAFRAMHPHRVKYSWFS--NFGRAREQKHGWRIDYFVVTHQIFRRVTTVDVLDDHNSY 309
Query: 108 LSTHCPLTIEY 118
S H P+ +
Sbjct: 310 -SDHVPIIMTL 319
>gi|229028860|ref|ZP_04184961.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1271]
gi|228732431|gb|EEL83312.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1271]
Length = 788
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKALEGTNL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|148284900|ref|YP_001248990.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Boryong]
gi|148285144|ref|YP_001249234.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Boryong]
gi|146740339|emb|CAM80757.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Boryong]
gi|146740583|emb|CAM81209.1| exodeoxyribonuclease III [Orientia tsutsugamushi str. Boryong]
Length = 261
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 14/135 (10%), Positives = 27/135 (20%), Gaps = 21/135 (15%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-------------QKMDPDGLL 52
+++ W ++ GD N + + M
Sbjct: 126 VDFMNAWFLNNKSKKDKIILLGDLNIAPLESDVWSSYQLRNVVSHTDIERKKLMHNITSF 185
Query: 53 IRFPQ-------EKESTCNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
++ RN D+ I S
Sbjct: 186 DWIDAVRFFSGKHEKLYSWWSYRNIDWSKSDRGRRLDHIWISHPLESKIKSCIIIKDARG 245
Query: 105 RSKLSTHCPLTIEYD 119
S H P+ +E +
Sbjct: 246 WDMPSDHVPVMLEIE 260
>gi|307108235|gb|EFN56476.1| hypothetical protein CHLNCDRAFT_30910 [Chlorella variabilis]
Length = 371
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 33/142 (23%), Gaps = 29/142 (20%)
Query: 2 LSQQGEWLKKWAD------QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + G ++KW ++++ P V+ GD N I
Sbjct: 232 LKRLGYRVEKWDKDFSAYLKRLEQHKPVVVTGDLNVAPAEIDIHSPKTNLKSAGFTPQER 291
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
E + R + + D+ S+
Sbjct: 292 ASFAANLLGQGFVDCFRTQYPEAVAYTYWGYRFNARGNNKGWRLDHFLVSQQLHSSLHDC 351
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
S HCPL +
Sbjct: 352 ----YHLPAIMGSDHCPLGLVL 369
>gi|270295395|ref|ZP_06201596.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270274642|gb|EFA20503.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 283
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 32/118 (27%), Gaps = 6/118 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + + Q I +P +I GDFN ++S T M +
Sbjct: 172 RESAKLILEKIKQ-IAGELPVIITGDFNGTVDSEPVTILTEGGMRNACSTAKVVYGP--- 227
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R ++ S + Y LS H P+ +
Sbjct: 228 TWSFHDFG--RIPVEKRRLIDFIFVNASVEVERYRTVGDKPDNGYLSDHAPVLVTLKL 283
>gi|229551812|ref|ZP_04440537.1| exodeoxyribonuclease III [Lactobacillus rhamnosus LMS2-1]
gi|229314756|gb|EEN80729.1| exodeoxyribonuclease III [Lactobacillus rhamnosus LMS2-1]
Length = 253
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 25/133 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQK 45
+Q +W + + ++ P V GD N I +D F ++
Sbjct: 120 RQ-QWDRDFLAYTNELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQ 178
Query: 46 MDPD--GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
++ F + + R + + F+ ++F Y Q
Sbjct: 179 LNSGFIDTFRHFYPDTVTYSWWSYRFHARANNAGW--RIDYFVASSAFQ--PYIQDAKIL 234
Query: 104 RRSKLSTHCPLTI 116
+ S HCP+ +
Sbjct: 235 TQIMGSDHCPVEL 247
>gi|226309896|ref|YP_002769790.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
gi|226092844|dbj|BAH41286.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
Length = 253
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 32/131 (24%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + Q + P V+ GD N I + + +
Sbjct: 124 DRFRNYLLQ-LDGKKPVVVCGDLNVAHQEIDLKNAKSNRGNSGFTPEEREKMTSLLAAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + ++ K D + +++
Sbjct: 183 VDTYRYFYPDQTDAYTWWSFMPKVRERNIGWRIDYFLASERLAPALLRAGIDSQVMG--- 239
Query: 108 LSTHCPLTIEY 118
S HCP+ +E
Sbjct: 240 -SDHCPVVLEL 249
>gi|242023120|ref|XP_002431984.1| protein angel, putative [Pediculus humanus corporis]
gi|212517335|gb|EEB19246.1| protein angel, putative [Pediculus humanus corporis]
Length = 354
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 3/121 (2%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QG L W +KI G P +I GDFN + + +
Sbjct: 224 LRDHQGRDLLTWL-EKISGGRPIIIGGDFNAEPSE-PVYRTMTDNRLDLKSAYSVNGREP 281
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++DY + + + + + + + S S H L ++++
Sbjct: 282 PYTTWKGEICHTIDYVFHSKHFIPLRLLDFPTGKTIGPERIPS-LSYPSDHFSLVVDFEL 340
Query: 121 E 121
Sbjct: 341 N 341
>gi|326799553|ref|YP_004317372.1| endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
gi|326550317|gb|ADZ78702.1| Endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
Length = 649
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 28/113 (24%), Gaps = 11/113 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ L Q+ +P ++ GDFN K + + ++
Sbjct: 219 AKALAALVKQENTDNLPVIVFGDFNAKPGITEILNLK----NELDVVDALGDSSGDYTFH 274
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S + D S + S S H P+ Y
Sbjct: 275 GWDATGSSK-------LDWIMSDRSMAFTSSRVITTSYNGYWPSDHWPIIATY 320
>gi|296114978|ref|ZP_06833622.1| putative exodeoxyribonuclease III [Gluconacetobacter hansenii ATCC
23769]
gi|295978440|gb|EFG85174.1| putative exodeoxyribonuclease III [Gluconacetobacter hansenii ATCC
23769]
Length = 260
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 30/132 (22%), Gaps = 18/132 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD 49
L + A + G FV+ GD+N F +
Sbjct: 125 MAALAQHARDLLHAGTDFVLTGDYNVCPTDEDLAPGALPPDDALVRPASRAAFRTLLWLG 184
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
++ + L+ ++S + ++
Sbjct: 185 LTDALRALHPVGRFYTFWDYQAGAWQRDSGLRIDHALLSPRVAERLLSAIPDREERNMTQ 244
Query: 108 LSTHCPLTIEYD 119
S H PL +
Sbjct: 245 PSDHVPLIVTLR 256
>gi|255513574|gb|EET89840.1| exodeoxyribonuclease III Xth [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 249
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 28/121 (23%), Gaps = 22/121 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
+++ P ++ GDFN I + + F +
Sbjct: 131 RLEAKKPVLVCGDFNVAHKDIDIARPAENRGNAGFTDEEREWMTEFLGGGRLDTFRIFNK 190
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E + + F+ S + + S H P+ +
Sbjct: 191 GAEHYTWWAYFSHARDRNIGW--RIDYFVASKQMR--SRIVNAGILSEIRGSDHAPIYVT 246
Query: 118 Y 118
Sbjct: 247 L 247
>gi|226228755|ref|YP_002762861.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
gi|226091946|dbj|BAH40391.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
Length = 265
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 27/122 (22%), Gaps = 22/122 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPD---GLLIRFPQE 58
++ P V GD N + + +Q L F Q
Sbjct: 148 LEMKKPVVFCGDLNVAHTELDLANPKPNRGRKGFTDEERQGFQSFLDAGFVDTLRMFHQG 207
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S D S+ + + S HCP+++
Sbjct: 208 NGHYSWWSHFANSRARNVGWRIDYVLVSAALQKSVATAEIH----ADVMGSDHCPVSVTL 263
Query: 119 DF 120
Sbjct: 264 SL 265
>gi|184159856|ref|YP_001848195.1| exonuclease III [Acinetobacter baumannii ACICU]
gi|213159082|ref|YP_002321080.1| exodeoxyribonuclease III [Acinetobacter baumannii AB0057]
gi|215481899|ref|YP_002324081.1| exodeoxyribonuclease III [Acinetobacter baumannii AB307-0294]
gi|239503819|ref|ZP_04663129.1| catabolite repression control protein [Acinetobacter baumannii
AB900]
gi|301347005|ref|ZP_07227746.1| catabolite repression control protein [Acinetobacter baumannii
AB056]
gi|301510728|ref|ZP_07235965.1| catabolite repression control protein [Acinetobacter baumannii
AB058]
gi|301597923|ref|ZP_07242931.1| catabolite repression control protein [Acinetobacter baumannii
AB059]
gi|332850148|ref|ZP_08432535.1| exodeoxyribonuclease III [Acinetobacter baumannii 6013150]
gi|332868976|ref|ZP_08438535.1| exodeoxyribonuclease III [Acinetobacter baumannii 6013113]
gi|332872852|ref|ZP_08440817.1| exodeoxyribonuclease III [Acinetobacter baumannii 6014059]
gi|183211450|gb|ACC58848.1| Exonuclease III [Acinetobacter baumannii ACICU]
gi|193078676|gb|ABO13730.2| catabolite repression control protein [Acinetobacter baumannii ATCC
17978]
gi|213058242|gb|ACJ43144.1| exodeoxyribonuclease III [Acinetobacter baumannii AB0057]
gi|213986663|gb|ACJ56962.1| exodeoxyribonuclease III [Acinetobacter baumannii AB307-0294]
gi|322509770|gb|ADX05224.1| exonuclease III [Acinetobacter baumannii 1656-2]
gi|323519783|gb|ADX94164.1| catabolite repression control protein [Acinetobacter baumannii
TCDC-AB0715]
gi|332730997|gb|EGJ62303.1| exodeoxyribonuclease III [Acinetobacter baumannii 6013150]
gi|332733019|gb|EGJ64221.1| exodeoxyribonuclease III [Acinetobacter baumannii 6013113]
gi|332739013|gb|EGJ69875.1| exodeoxyribonuclease III [Acinetobacter baumannii 6014059]
Length = 274
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 27/140 (19%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------F 42
L + + LK+W D+ +I GD+N I +
Sbjct: 143 LGEYAKILKQWRDE----NKSIIICGDYNIVHKRIDIKNWSGNQKSSGCLPHERAWLDHI 198
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ ++ E E R ++ + +
Sbjct: 199 YDELGYVDTFRVVRTEAELYSWWSNRGQARAKNVGW--RIDYHACSPDWKA--RTVNAWV 254
Query: 103 TRRSKLSTHCPLTIEYDFEK 122
+ S H P+ I+Y ++
Sbjct: 255 YKDQWFSDHAPVIIDYKIQE 274
>gi|169634777|ref|YP_001708513.1| catabolite repression control protein [Acinetobacter baumannii SDF]
gi|169794343|ref|YP_001712136.1| catabolite repression control protein [Acinetobacter baumannii AYE]
gi|260557895|ref|ZP_05830108.1| exodeoxyribonuclease III [Acinetobacter baumannii ATCC 19606]
gi|169147270|emb|CAM85129.1| catabolite repression control protein [Acinetobacter baumannii AYE]
gi|169153569|emb|CAP02744.1| catabolite repression control protein [Acinetobacter baumannii]
gi|260408686|gb|EEX01991.1| exodeoxyribonuclease III [Acinetobacter baumannii ATCC 19606]
Length = 280
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 27/140 (19%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------F 42
L + + LK+W D+ +I GD+N I +
Sbjct: 149 LGEYAKILKQWRDE----NKSIIICGDYNIVHKRIDIKNWSGNQKSSGCLPHERAWLDHI 204
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ ++ E E R ++ + +
Sbjct: 205 YDELGYVDTFRVVRTEAELYSWWSNRGQARAKNVGW--RIDYHACSPDWKA--RTVNAWV 260
Query: 103 TRRSKLSTHCPLTIEYDFEK 122
+ S H P+ I+Y ++
Sbjct: 261 YKDQWFSDHAPVIIDYKIQE 280
>gi|119775274|ref|YP_928014.1| exodeoxyribonuclease III [Shewanella amazonensis SB2B]
gi|119767774|gb|ABM00345.1| Exodeoxyribonuclease III [Shewanella amazonensis SB2B]
Length = 268
Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats.
Identities = 13/103 (12%), Positives = 26/103 (25%), Gaps = 2/103 (1%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYF 76
++ G + + D E + R+K D
Sbjct: 167 DNAKRWLRTGKCSFLPEERE-WLQTLKDWGFDDSFRVLHPEKDATYSWFDYRSKGFDDNR 225
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + +V+ K S H P+ E++
Sbjct: 226 GLRIDVIMTTRSLTGRLVASGVDYNIRAMEKPSDHAPVWSEFE 268
>gi|91774073|ref|YP_566765.1| exodeoxyribonuclease III [Methanococcoides burtonii DSM 6242]
gi|91713088|gb|ABE53015.1| Exodeoxyribonuclease III [Methanococcoides burtonii DSM 6242]
Length = 251
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 31/135 (22%), Gaps = 22/135 (16%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------ 49
+ AD G +I GD N I +
Sbjct: 121 AFMEVADSMKDAGKNVIICGDVNTAHKEIDLARPKQNERSSGFLPQEREWIDTFLGHGYL 180
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
L F E + + ++ D + I S S
Sbjct: 181 DTLRMFEPESGNYTWWDMKTRARDRNVGWRIDYFFASVSLKDRIRSAYI----LSDVMGS 236
Query: 110 THCPLTIEYDFEKGN 124
HCP+ IE + +
Sbjct: 237 DHCPIGIEVELGDSS 251
>gi|227547629|ref|ZP_03977678.1| exodeoxyribonuclease III [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|227211884|gb|EEI79780.1| exodeoxyribonuclease III [Bifidobacterium longum subsp. infantis
ATCC 55813]
Length = 286
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 20/126 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK---------------MDPDGLLIRFPQE 58
D+ G V+ GDFN + + + + + +
Sbjct: 160 DEAAHGGKQAVLCGDFNIAHTPLDIKNAKANEKHAGFLPEERAYVDKWLDEYEFVDVMRS 219
Query: 59 -----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ +R ++ + D + + + + + T + S H P
Sbjct: 220 LAGDIRGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETARGFVIDKAPTYELRWSDHAP 279
Query: 114 LTIEYD 119
LTI YD
Sbjct: 280 LTITYD 285
>gi|206558889|ref|YP_002229649.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
cenocepacia J2315]
gi|198034926|emb|CAR50798.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
cenocepacia J2315]
Length = 257
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 27/143 (18%)
Query: 3 SQQG--EWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDD----------------- 41
QQ ++ ++ +K ++ GD N I +
Sbjct: 119 RQQAKYRFMAEFMPHLAALKKKREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEEREWL 178
Query: 42 --FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
+ + + E R ++ + + + S
Sbjct: 179 TKLFDDVGYVDVFRTLDPRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAGTAKSAS 236
Query: 100 DLDTRRSKLSTHCPLTIEYDFEK 122
+ K S H PLT++YD++K
Sbjct: 237 IF--KDIKFSDHAPLTVDYDYQK 257
>gi|6980804|pdb|1DE8|B Chain B, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980805|pdb|1DE8|A Chain A, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980812|pdb|1DE9|A Chain A, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
gi|6980813|pdb|1DE9|B Chain B, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
Length = 276
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 148 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 206
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + FL+ +S ++
Sbjct: 207 LADSFRHLYPNTP-YAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 263
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 264 GSDHCPITLYLAL 276
>gi|114562597|ref|YP_750110.1| exonuclease III [Shewanella frigidimarina NCIMB 400]
gi|114333890|gb|ABI71272.1| Exodeoxyribonuclease III [Shewanella frigidimarina NCIMB 400]
Length = 268
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 28/138 (20%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L ++ I GD N +
Sbjct: 131 QDLMVHLEKHHSADEDIAIIGDINISPTDLDIGIGEVNAKRWLKTGKCSFQPEEREWLAR 190
Query: 43 WQKMDPDGLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
Q+ + + R+K D + D +V D
Sbjct: 191 LQQWGFIDSFRQLHPTRTERYSWFDYRSKGFDDNRGLRIDVILVTESMLPRLVESDVDYE 250
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 251 LRGIDKPSDHAPIWSTFS 268
>gi|229099528|ref|ZP_04230456.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-29]
gi|229118593|ref|ZP_04247945.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock1-3]
gi|228664785|gb|EEL20275.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock1-3]
gi|228683824|gb|EEL37774.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-29]
Length = 352
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G ++ GD+N+ I+++ +D + K P+ L+ +
Sbjct: 226 IRKQQVEYLKEYMNKHYKNGDYVIMGGDWNQLISNVQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|83950914|ref|ZP_00959647.1| exodeoxyribonuclease III, putative [Roseovarius nubinhibens ISM]
gi|83838813|gb|EAP78109.1| exodeoxyribonuclease III, putative [Roseovarius nubinhibens ISM]
Length = 262
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 28/133 (21%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGLL- 52
++ W + ++ GD N + + + ++ G
Sbjct: 133 MRDWF--HAERPEKSILVGDLNIAPREDDVWNHKQLLKVVSHTPVEVEHFNEVMDAGQWS 190
Query: 53 ---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
E R D R + S K
Sbjct: 191 DVTRADIPEGLLYSWWSYR-ARDWDVADKGRRLDHVWATPDIRNAAHSSRVLRDARGWEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFAHFDL 262
>gi|315637812|ref|ZP_07893002.1| exodeoxyribonuclease III [Campylobacter upsaliensis JV21]
gi|315482053|gb|EFU72667.1| exodeoxyribonuclease III [Campylobacter upsaliensis JV21]
Length = 252
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLI 53
+ ++ +K G +I GD N I T +
Sbjct: 129 YLNKLLKEGKEVIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLALGFIDTFR 188
Query: 54 RFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + R K+ D + + D S H
Sbjct: 189 EINGDIKEKYSWWSYRMKARERNVGWRIDYFFISKGLKSKLKNAFIKDDIFG----SDHA 244
Query: 113 PLTIEYD 119
P+ IE D
Sbjct: 245 PVGIELD 251
>gi|307942540|ref|ZP_07657888.1| exodeoxyribonuclease III [Roseibium sp. TrichSKD4]
gi|307774179|gb|EFO33392.1| exodeoxyribonuclease III [Roseibium sp. TrichSKD4]
Length = 269
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 29/123 (23%), Gaps = 23/123 (18%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFW--------------------QKMDPDGLLIRFPQ 57
+T P V+ GD N D + P
Sbjct: 146 ETAKPAVLVGDLNVAPYEHDVWSHKQLLKVVSHTPIETELFEAVRESGNWLDAMRQFTPM 205
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLSTHCPLT 115
E++ R K R + + + S + K S H P+
Sbjct: 206 EEKLYTWWSYRAKDWSK-ADKGRRLDHVWVSDPLKSAIKSTEVLRDARGWEKPSDHAPVV 264
Query: 116 IEY 118
++
Sbjct: 265 ADF 267
>gi|219122782|ref|XP_002181718.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406994|gb|EEC46932.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 489
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 30/143 (20%)
Query: 7 EWLKKWA----DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------- 48
EW K + ++ G+P + GD N ++ +D + +
Sbjct: 348 EWDKDFLSFIQKKQKDRGVPVLWLGDLNVAHTNLEVWNDGAKHLAKQAGVTAEERASFEA 407
Query: 49 -------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
D P K +R + F+ D S
Sbjct: 408 QLNAGFIDAFRRLHPTAKGHYSYWSQRAGNREPNKG--LRLDYFICDPSLFDEESKTIVR 465
Query: 102 DTR---RSKLSTHCPLTIEYDFE 121
D+ + S HCP+ +E + +
Sbjct: 466 DSYVLPLQQGSDHCPVVLELEIK 488
>gi|65317062|ref|ZP_00390021.1| COG3568: Metal-dependent hydrolase [Bacillus anthracis str. A2012]
Length = 227
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G ++ GD+N+ ++ + +D + K P+ L+ +
Sbjct: 101 IRKQQVEFLKEYMNKHYKNGDYVIMGGDWNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 160
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 161 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 217
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 218 NPVSAVFKLK 227
>gi|71989536|ref|NP_001021584.1| EXOnuclease family member (exo-3) [Caenorhabditis elegans]
gi|3879014|emb|CAB03235.1| C. elegans protein R09B3.1a, confirmed by transcript evidence
[Caenorhabditis elegans]
gi|3941298|gb|AAC82328.1| exonuclease III homolog [Caenorhabditis elegans]
Length = 288
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/125 (9%), Positives = 33/125 (26%), Gaps = 23/125 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLIRF 55
+++ P + GD N N I + + +
Sbjct: 168 KEMDEKKPVIYGGDLNVAHNEIDLKNPESNRNKTAGFTDQERGWFSEMLELGFTDTFRAM 227
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ ++ + +++ N + + S H P+
Sbjct: 228 HPDEKKYSFWSY--LANSRQKDVGWRLDYYVVSNRIMNKVKRSDIMSS--VMGSDHAPVV 283
Query: 116 IEYDF 120
++ DF
Sbjct: 284 MQIDF 288
>gi|258539213|ref|YP_003173712.1| exodeoxyribonuclease III [Lactobacillus rhamnosus Lc 705]
gi|257150889|emb|CAR89861.1| Exodeoxyribonuclease III [Lactobacillus rhamnosus Lc 705]
Length = 252
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 25/133 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQK 45
+Q +W + + ++ P V GD N I +D F ++
Sbjct: 119 RQ-QWDRDFLAYTNELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQ 177
Query: 46 MDPD--GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
++ F + + R + + F+ ++F Y Q
Sbjct: 178 LNSGFIDTFRHFYPDTVTYSWWSYRFHARANNAGW--RIDYFVASSAFQ--PYIQDAKIL 233
Query: 104 RRSKLSTHCPLTI 116
+ S HCP+ +
Sbjct: 234 TQIMGSDHCPVEL 246
>gi|89097572|ref|ZP_01170461.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
gi|89087868|gb|EAR66980.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
Length = 251
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 34/133 (25%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ ++++ + ++ P ++ GD N I + + +
Sbjct: 124 DEIREYILE-LEQKKPVILCGDLNVAHLDIDLKNARSNRGNSGFTDEERGKMTSLLSEGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
E + + K F++ + D
Sbjct: 183 VDSFRYLYPEQEGAYTWWSYMAKVRERNIGW--RIDYFIVSDKLKEHILDSKIYC--DIM 238
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E
Sbjct: 239 GSDHCPIMLEMAL 251
>gi|241206774|ref|YP_002977870.1| exodeoxyribonuclease III Xth [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240860664|gb|ACS58331.1| exodeoxyribonuclease III Xth [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 267
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 29/131 (22%), Gaps = 21/131 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDG 50
K + ++ GD N + D
Sbjct: 137 KLLKANGEANTSAILVGDLNIAPLEHDVWSHKQLLKIVSHTPVETEGLLEVMKRGAWLDL 196
Query: 51 LLIRFPQEKESTCNVIKRNKSS-LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ P ++ R K D+ D + + + S
Sbjct: 197 MRQHVPASEKLYTWWSYRAKDWEAADRGRRLDHIWSSSDLGPHLKRIEILKEARGWDRPS 256
Query: 110 THCPLTIEYDF 120
H P+T +DF
Sbjct: 257 DHVPVTAHFDF 267
>gi|16802368|ref|NP_463853.1| hypothetical protein lmo0323 [Listeria monocytogenes EGD-e]
gi|224502384|ref|ZP_03670691.1| hypothetical protein LmonFR_07664 [Listeria monocytogenes FSL
R2-561]
gi|16409687|emb|CAD00850.1| lmo0323 [Listeria monocytogenes EGD-e]
Length = 256
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
I P +I GDFN + + +K L+ + + R L
Sbjct: 153 AATIAENSPVIILGDFNTEP-DTPTYNFITKKYQDAQLISQKHAKGPIGSFHDFR---PL 208
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ F + +Y+ + S H P+T D++
Sbjct: 209 RPINELEKIDYIFVSEEFQVCTYETIVDEVDGFSASDHFPVTANLDWK 256
>gi|83954036|ref|ZP_00962756.1| endonuclease/exonuclease/phosphatase family protein [Sulfitobacter
sp. NAS-14.1]
gi|83841073|gb|EAP80243.1| endonuclease/exonuclease/phosphatase family protein [Sulfitobacter
sp. NAS-14.1]
Length = 341
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 37/143 (25%), Gaps = 26/143 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-------------QKMDPDGL 51
Q WL++ D ++ G P ++ GD N D F + +
Sbjct: 196 QAIWLRRRIDARLDDGTPLMVLGDLNDGPGLDSFEDLFGRSSVEIVMGHRQDRALVDPHA 255
Query: 52 LIRFPQEKESTCNVIKRNKSSLD-------------YFVIDRDNKNFLIDNSFSIVSYDQ 98
Q + + + + + + +
Sbjct: 256 TRALGQRIGAMPTTSRFWIAPEKRYLQALLDYIMISPALTAHRPQWRIWHPLDDPECWGD 315
Query: 99 SDLDTRRSKLSTHCPLTIEYDFE 121
+ L S H P+TI+ D
Sbjct: 316 ATLRDALITASDHFPVTIDLDLS 338
>gi|269987019|gb|EEZ93294.1| exodeoxyribonuclease III [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 252
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 33/125 (26%), Gaps = 25/125 (20%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+K++ P VI GDFN + + F
Sbjct: 133 EKLRKRKPVVIGGDFNVAHTDLDIARPKQNDGNAGFTREERAFVDKFIEKGYIDTFRLFN 192
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLSTHCPL 114
+E + KS+ I FL+ + + S H P+
Sbjct: 193 KEGGNYSWWTYLYKSAKAN-NIAWRIDYFLVSSELKNKVKAAGIIKKQEG----SDHAPV 247
Query: 115 TIEYD 119
+E D
Sbjct: 248 FVEVD 252
>gi|171060718|ref|YP_001793067.1| exodeoxyribonuclease III Xth [Leptothrix cholodnii SP-6]
gi|170778163|gb|ACB36302.1| exodeoxyribonuclease III Xth [Leptothrix cholodnii SP-6]
Length = 262
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 25/142 (17%)
Query: 3 SQQGE-WLKKWADQKI---KTGIPFVIAGDFNRKINSIGDTDD----------------F 42
QQ + + + K G FV+ GD N I +
Sbjct: 122 RQQAKFRFLDLIEPHLRALKAGREFVLMGDVNIAHQEIDLKNWKGNLKNSGFLPEERAWM 181
Query: 43 WQKMDPDGLLIRFPQEKESTC---NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
+ + GL+ + + + N+ + L + + + S
Sbjct: 182 TRLLGDTGLVDVYRRLRPDATDEAYTWWSNRGQARAKNVGWRIDYHLATPGLAATARETS 241
Query: 100 DLDTRRSKLSTHCPLTIEYDFE 121
+ S H PLTI+YDF+
Sbjct: 242 IYKAQWF--SDHAPLTIDYDFD 261
>gi|262377172|ref|ZP_06070397.1| exodeoxyribonuclease III [Acinetobacter lwoffii SH145]
gi|262307910|gb|EEY89048.1| exodeoxyribonuclease III [Acinetobacter lwoffii SH145]
Length = 272
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 36/138 (26%), Gaps = 27/138 (19%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------F 42
L + + LK+W D+ ++ GD+N I +
Sbjct: 143 LEEYAKILKQWRDE----NKSVIVCGDYNIVHKRIDIKNWSGNQKASGCLPHERAWLDHI 198
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ ++ +E E R ++ + +
Sbjct: 199 YDELGYVDTFREVRKEAELYSWWSNRGQARAKNVGW--RIDYHACSPDWKE--RTVNAWV 254
Query: 103 TRRSKLSTHCPLTIEYDF 120
+ S H P+ I+Y
Sbjct: 255 YKEQWFSDHAPVIIDYKL 272
>gi|255014700|ref|ZP_05286826.1| hypothetical protein B2_12389 [Bacteroides sp. 2_1_7]
Length = 279
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 5/110 (4%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC--NVIKRNKS 71
+K+ +P ++ GDFN + DP L +
Sbjct: 173 AKKLSENLPIIVTGDFNAVPSDEPIQ-VLTNPSDPRHLTHSRTIAGFTYGPKWTFHDFGK 231
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + ++ + S HCP+ E
Sbjct: 232 IPYDKREW--IDYIFVKGNIKVLRHGVLTETLNNLFPSDHCPVISTLILE 279
>gi|227823661|ref|YP_002827634.1| exodeoxyribonuclease III [Sinorhizobium fredii NGR234]
gi|227342663|gb|ACP26881.1| exodeoxyribonuclease III [Sinorhizobium fredii NGR234]
Length = 268
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 31/131 (23%), Gaps = 21/131 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDG 50
K + + GI ++ GD N D
Sbjct: 138 KLLHAEAEAGISSILVGDLNIAPLEHDVWSHKQLLKIVSHTPVETDGLTTVMTGGAWVDL 197
Query: 51 LLIRFPQEKESTCNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ P ++ R K D+ D + ++ D + S
Sbjct: 198 MRQHTPPPEKLYTWWSYRAKDWAAVDRGRRLDHIWSSADLAAKLLRVDILREARGWERPS 257
Query: 110 THCPLTIEYDF 120
H P+ ++
Sbjct: 258 DHVPVIAHFEL 268
>gi|119962536|ref|YP_947021.1| exodeoxyribonuclease III [Arthrobacter aurescens TC1]
gi|119949395|gb|ABM08306.1| exodeoxyribonuclease III [Arthrobacter aurescens TC1]
Length = 277
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/138 (10%), Positives = 35/138 (25%), Gaps = 21/138 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMD 47
+ + + + K ++ GD N + + F + +
Sbjct: 140 RFLDAMTVRLPELAKHSDHALVVGDLNVGHTELDIKNWKGNVKRAGFLPEERAYFDRFLG 199
Query: 48 PDGLLIRFPQEKES-----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ + +R K+ D + + S
Sbjct: 200 EEIGWRDVHRGLAGNVAGPYTWWSQRGKAFDTDTGWRIDYHLATPGLAAAAFSAVVDRAP 259
Query: 103 TRRSKLSTHCPLTIEYDF 120
+ ++ S H PL ++Y
Sbjct: 260 SWDTRFSDHAPLVVDYRL 277
>gi|68535324|ref|YP_250029.1| exodeoxyribonuclease III [Corynebacterium jeikeium K411]
gi|68262923|emb|CAI36411.1| exodeoxyribonuclease III [Corynebacterium jeikeium K411]
Length = 266
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/136 (10%), Positives = 35/136 (25%), Gaps = 24/136 (17%)
Query: 7 EWLKKWAD------QKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQK 45
+ L +A + K+ + GD+N D +
Sbjct: 131 DALAAYAAGSGVGASQRKSSEKLCLVGDYNIAPRDEDVWDRSYFDGRTHVTPNERARLRA 190
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
++ GL + + D + + + + +
Sbjct: 191 LEDAGLSAATDLIANEYTYWDYQAMRFQKGEGMRIDLQYAR---GITPTAARVDRDERKG 247
Query: 106 SKLSTHCPLTIEYDFE 121
S H P+ ++Y+ +
Sbjct: 248 KGASDHAPVIVDYNVD 263
>gi|148556812|ref|YP_001264394.1| exodeoxyribonuclease III [Sphingomonas wittichii RW1]
gi|148502002|gb|ABQ70256.1| Exodeoxyribonuclease III [Sphingomonas wittichii RW1]
Length = 271
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 27/133 (20%), Gaps = 20/133 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINS------------------IGDTDDFWQKMDP 48
+ L A +P V+AGD+N F + +
Sbjct: 139 DRLIDHAADLWAGEMPVVLAGDYNVIPTPSTDDVFSERAMASDALTQPESRAAFRRLCNA 198
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRS 106
++ + ++ + +
Sbjct: 199 GWTDAVRTIHPHGPVYTFWDYQAGAWQRDAGFRIDHLMLSPAAADRLTGAGVDKDTRALE 258
Query: 107 KLSTHCPLTIEYD 119
K S H P I
Sbjct: 259 KASDHAPTWITLR 271
>gi|296161384|ref|ZP_06844191.1| exodeoxyribonuclease III Xth [Burkholderia sp. Ch1-1]
gi|295888370|gb|EFG68181.1| exodeoxyribonuclease III Xth [Burkholderia sp. Ch1-1]
Length = 259
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 31/142 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++ ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELAQEREVIVCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + Q E R ++ + + +
Sbjct: 177 WLTKLFDEVGYVDVFRTLDQRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPDIASKAKR 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
R K S H PLT++YD
Sbjct: 235 TDVF--RDIKFSDHAPLTVDYD 254
>gi|254724480|ref|ZP_05186264.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A1055]
Length = 352
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ K G ++ GD N+ ++ + +D + K P+ L+ +
Sbjct: 226 IRKQQVEFLKEYMNKHYKNGDYVIMGGDRNQLVSDVQLSDPKFVKERPEWLVELPKDFTD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|88860700|ref|ZP_01135337.1| hypothetical protein PTD2_05565 [Pseudoalteromonas tunicata D2]
gi|88817295|gb|EAR27113.1| hypothetical protein PTD2_05565 [Pseudoalteromonas tunicata D2]
Length = 316
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 46/117 (39%), Gaps = 5/117 (4%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++Q WL KW ++K + P+++ GDFN ++ + + + +G ++
Sbjct: 202 FAKQAVWLDKWFERKEASKQPYIVMGDFNHRLATDNNRLMQELANNSNGAASTLKHITQN 261
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ R + +D+ ++ + + + + LS HC +T
Sbjct: 262 VVSCHPRYPAPIDHQFAGGFSQAIPTNVQMRYFA-----DKSETAMLSDHCAVTFTL 313
>gi|329910713|ref|ZP_08275356.1| Exodeoxyribonuclease III [Oxalobacteraceae bacterium IMCC9480]
gi|327546113|gb|EGF31174.1| Exodeoxyribonuclease III [Oxalobacteraceae bacterium IMCC9480]
Length = 256
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLL 52
+G VI GD+N I + + ++ +
Sbjct: 133 HLAALKASGREVVICGDWNIAHQEIDLKNWKGNKKNSGFLPEERAWLSRLFDEVALVDVF 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
R + E R ++ + + + + + + + S H
Sbjct: 193 RRVDERAEQYTWWSNRGQAWANNVGW--RIDYQIATPGIAATAKAVAIY--KDERFSDHA 248
Query: 113 PLTIEYD 119
PLTIEYD
Sbjct: 249 PLTIEYD 255
>gi|228932469|ref|ZP_04095350.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228827159|gb|EEM72912.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 788
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNHFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|163745437|ref|ZP_02152797.1| exodeoxyribonuclease III [Oceanibulbus indolifex HEL-45]
gi|161382255|gb|EDQ06664.1| exodeoxyribonuclease III [Oceanibulbus indolifex HEL-45]
Length = 262
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 26/133 (19%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W ++ GD N D +
Sbjct: 133 MRDWF--HSDKPEKSILVGDLNIAPREDDVWDHKKLLKIVSHTPVEVEALGAVQDAGNWV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ + R + D R + + S K
Sbjct: 191 DITRQDVPTGNLYSWWSYR-AADWDAADKGRRLDHIWATADIAQAGHSSHIVRDARGWEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFASFDL 262
>gi|299068294|emb|CBJ39515.1| putative exodeoxyribonuclease III/endonuclease/phosphatase
[Ralstonia solanacearum CMR15]
Length = 261
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 40/142 (28%), Gaps = 29/142 (20%)
Query: 3 SQQGEW------LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D + + G V+ GD N I +
Sbjct: 119 RQQAKFRFMDLFMQHLTDLRHEKGREVVLCGDVNIVHKEIDIKNWKGNQKNSGCLPEERA 178
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + E R ++ + + +
Sbjct: 179 WLTRLFDEVGYVDVFRTLDPRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGIAATARS 236
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
S R K S H PLT++YD
Sbjct: 237 TSIF--RDIKFSDHAPLTVDYD 256
>gi|297200306|ref|ZP_06917703.1| exodeoxyribonuclease III [Streptomyces sviceus ATCC 29083]
gi|197709420|gb|EDY53454.1| exodeoxyribonuclease III [Streptomyces sviceus ATCC 29083]
Length = 274
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 33/134 (24%), Gaps = 22/134 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
LK + G V+ GD+N + +
Sbjct: 141 LKDLRTRAAADGREVVVCGDWNIAHQQADLKNWRANQKSSGFLPEERAWLSRVLEPTDGG 200
Query: 50 --GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
++ + + R ++ + D + V T
Sbjct: 201 YVDVVRSLHPDVEGPYSWWSYRGRAFDNDSGWRIDYHVSTPGLASKAVKGFVERAATHAE 260
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+T+ YD
Sbjct: 261 RWSDHAPVTVVYDL 274
>gi|332285653|ref|YP_004417564.1| catabolite repression control protein [Pusillimonas sp. T7-7]
gi|330429606|gb|AEC20940.1| catabolite repression control protein [Pusillimonas sp. T7-7]
Length = 260
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 21/129 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGL 51
K + + G V+ GD+N I + + ++ +
Sbjct: 132 KHLSELAQCGRQVVLCGDWNIAHQEIDLKNWKGNLKNSGFLPEERAWLTRVFDEIGWVDV 191
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ N+ + + + + S + + S H
Sbjct: 192 YRSLYPDATGEAYTWWSNRGQAWAKNVGWRIDYQIASPEIAATAKTASIY--KDERFSDH 249
Query: 112 CPLTIEYDF 120
PLTI+YD+
Sbjct: 250 APLTIDYDW 258
>gi|313680366|ref|YP_004058105.1| exodeoxyribonuclease III xth [Oceanithermus profundus DSM 14977]
gi|313153081|gb|ADR36932.1| exodeoxyribonuclease III Xth [Oceanithermus profundus DSM 14977]
Length = 252
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/132 (9%), Positives = 24/132 (18%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ ++ + + V+ GD N I +
Sbjct: 125 QAIENYLEGLRARKG-VVLMGDLNVAHREIDIARPKQNQKSAGFTPEERAWIDAFLKKGW 183
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + R + LI +
Sbjct: 184 IDTFRHLHPDATGAYTWWTYRFNARAKNIGW--RIDYILISEDLLPHLM--DAYIYYDAY 239
Query: 108 LSTHCPLTIEYD 119
S H P+ D
Sbjct: 240 ASDHVPVVAVLD 251
>gi|288931161|ref|YP_003435221.1| exodeoxyribonuclease III [Ferroglobus placidus DSM 10642]
gi|288893409|gb|ADC64946.1| exodeoxyribonuclease III [Ferroglobus placidus DSM 10642]
Length = 253
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 19/130 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQ---KMDPDG 50
LK++ + + +++ GD N I ++ ++
Sbjct: 122 LKEFLSEFVDFKGYYLLCGDMNVAPEDIDVHSPDKLRNHVCFHEDVKKAFKEIVQLGFVD 181
Query: 51 LLIRFPQEKESTCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+L + ++ R + D+ + K S
Sbjct: 182 VLRKHHPKERIYTFYDYRVRDAVKRGLGWRVDHILATEKLAEKSKDCYVLLEYRTTEKPS 241
Query: 110 THCPLTIEYD 119
H PL E++
Sbjct: 242 DHVPLVAEFE 251
>gi|307323928|ref|ZP_07603137.1| Endonuclease/exonuclease/phosphatase [Streptomyces violaceusniger
Tu 4113]
gi|306890377|gb|EFN21354.1| Endonuclease/exonuclease/phosphatase [Streptomyces violaceusniger
Tu 4113]
Length = 303
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 10/104 (9%), Positives = 19/104 (18%), Gaps = 4/104 (3%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ + +P ++ GDFN + D +
Sbjct: 204 LDSALPRIVTGDFNVAAHGNPVYDAMLHGGTLVDSWDTAERRGPLYG----TFHGFGPLV 259
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
L S H P+ +
Sbjct: 260 PDGDRIDWILTSPGVRTHHAVIDTYSGDGQYPSDHLPVRTVLEL 303
>gi|258544338|ref|ZP_05704572.1| exodeoxyribonuclease III [Cardiobacterium hominis ATCC 15826]
gi|258520418|gb|EEV89277.1| exodeoxyribonuclease III [Cardiobacterium hominis ATCC 15826]
Length = 157
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 11/109 (10%), Positives = 22/109 (20%), Gaps = 20/109 (18%)
Query: 26 AGDFNRKINSIGDTDD-FWQK-----------------MDPDGLLIRFPQEKESTCNVIK 67
GDFN + D W+ + +
Sbjct: 47 IGDFNITPADLDVHDPDAWRDKILCSAPERQALADILALGYRDAYRNLHPDTVQYSWWDY 106
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
R + L ++ ++ + S H P +
Sbjct: 107 RMGGLRRNIGM--RIDLTLCSDNLALHDAGIDTEPRHWERPSDHAPAWV 153
>gi|227494748|ref|ZP_03925064.1| possible exodeoxyribonuclease III [Actinomyces coleocanis DSM
15436]
gi|226831748|gb|EEH64131.1| possible exodeoxyribonuclease III [Actinomyces coleocanis DSM
15436]
Length = 273
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 36/133 (27%), Gaps = 21/133 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------------FWQK 45
+ + + + + +G V+ GD N + +
Sbjct: 140 KLVTERMAEIVASGKHAVVVGDLNIVRSEKDIKNWKGNHNKSAGVMDEEIAYVDGWMSSG 199
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ +++ R KS + D + + + + S D
Sbjct: 200 WTDISRQLHGAEQQGPYTWWSWRGKSFDNDAGWRIDYQLATAELAATATSCVVDRADAYE 259
Query: 106 SKLSTHCPLTIEY 118
+ S H PL + Y
Sbjct: 260 KRFSDHAPLRVHY 272
>gi|296090736|ref|NP_001171688.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Gallus gallus]
gi|194722849|dbj|BAG66138.1| APEX nuclease [Gallus gallus]
Length = 300
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 27/124 (21%), Gaps = 21/124 (16%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPD---GLLIRFP 56
Q++ P V+ GD N I + + +
Sbjct: 180 QRLDAQKPVVLCGDLNVAHREIDLRNPKSNRRSPGFTQEERDAFGALLDGGFLDSFRLLY 239
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + + FL+ + S HCP+T+
Sbjct: 240 PDVPNA-YTFWTYMGGARERNVGWRLDYFLLSTRLREALC--DSKIRSAAMGSDHCPITL 296
Query: 117 EYDF 120
Sbjct: 297 YLAL 300
>gi|150008872|ref|YP_001303615.1| hypothetical protein BDI_2262 [Parabacteroides distasonis ATCC
8503]
gi|256841134|ref|ZP_05546641.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|149937296|gb|ABR43993.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
gi|256736977|gb|EEU50304.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 287
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/110 (12%), Positives = 26/110 (23%), Gaps = 5/110 (4%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC--NVIKRNKS 71
+K+ +P ++ GDFN + DP L
Sbjct: 181 AKKLSENLPIIVTGDFNAVPSDEPIQ-VLTNPSDPRHLTHSRTIAGFIYGPEWTFHDFGK 239
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + ++ + S HCP+ E
Sbjct: 240 IPYDKREW--IDYIFVKGNIKVLRHGVLTETLNNLFPSDHCPVISTLILE 287
>gi|254518532|ref|ZP_05130588.1| endonuclease/exonuclease/phosphatase [Clostridium sp. 7_2_43FAA]
gi|226912281|gb|EEH97482.1| endonuclease/exonuclease/phosphatase [Clostridium sp. 7_2_43FAA]
Length = 265
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 3/110 (2%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
Q K P ++ GDFN S + K Q+ + +
Sbjct: 154 KQHEKDNYPAILMGDFNASPTSKAIKNFSEGKYSSKKF--IAVQDHKKEIYNMSTMSKFK 211
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ F ++ + + + S H P+ + D K
Sbjct: 212 GNK-KGLHIDYIFVTEEFKVLDTEILEYNKNGKYPSDHYPMIAKLDINKN 260
>gi|254476066|ref|ZP_05089452.1| exodeoxyribonuclease III [Ruegeria sp. R11]
gi|214030309|gb|EEB71144.1| exodeoxyribonuclease III [Ruegeria sp. R11]
Length = 262
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 27/133 (20%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W V+ GD N D D +
Sbjct: 133 MRDWF--HADRPEKSVLVGDLNIAPREDDVWDHKKLLKVVSHTPVEVEHFTDVMEAGGWS 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ + R K D R + + S K
Sbjct: 191 DVTRNDIPDGRLYSWWSYRAKDW-DAADKGRRLDHVWATSDIKSSAHSSRVLRDARGWEK 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFATFDL 262
>gi|229154750|ref|ZP_04282865.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus ATCC 4342]
gi|228628698|gb|EEK85410.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus ATCC 4342]
Length = 788
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTNL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|229195383|ref|ZP_04322152.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus m1293]
gi|228588082|gb|EEK46131.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus m1293]
Length = 788
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTNL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|107024036|ref|YP_622363.1| exodeoxyribonuclease III (xth) [Burkholderia cenocepacia AU 1054]
gi|116691123|ref|YP_836746.1| exodeoxyribonuclease III Xth [Burkholderia cenocepacia HI2424]
gi|170734454|ref|YP_001766401.1| exodeoxyribonuclease III Xth [Burkholderia cenocepacia MC0-3]
gi|254246884|ref|ZP_04940205.1| AP endonuclease, family 1 [Burkholderia cenocepacia PC184]
gi|105894225|gb|ABF77390.1| exodeoxyribonuclease III (xth) [Burkholderia cenocepacia AU 1054]
gi|116649212|gb|ABK09853.1| exodeoxyribonuclease III Xth [Burkholderia cenocepacia HI2424]
gi|124871660|gb|EAY63376.1| AP endonuclease, family 1 [Burkholderia cenocepacia PC184]
gi|169817696|gb|ACA92279.1| exodeoxyribonuclease III Xth [Burkholderia cenocepacia MC0-3]
Length = 257
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 41/143 (28%), Gaps = 27/143 (18%)
Query: 3 SQQG--EWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDD----------------- 41
QQ ++ ++ +K ++ GD N I +
Sbjct: 119 RQQAKYRFMAEFMPHLAALKKKREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEEREWL 178
Query: 42 --FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
+ + + Q E R ++ + + + S
Sbjct: 179 TKLFDDVGYVDVFRTLDQRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAGTAKSTS 236
Query: 100 DLDTRRSKLSTHCPLTIEYDFEK 122
+ K S H PLTI+YD++K
Sbjct: 237 IF--KDIKFSDHAPLTIDYDYQK 257
>gi|47567552|ref|ZP_00238263.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus G9241]
gi|47555747|gb|EAL14087.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus G9241]
Length = 788
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTNL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|167561089|ref|ZP_02354005.1| exodeoxyribonuclease III [Burkholderia oklahomensis EO147]
gi|167568307|ref|ZP_02361181.1| exodeoxyribonuclease III [Burkholderia oklahomensis C6786]
Length = 256
Score = 59.5 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 42/144 (29%), Gaps = 31/144 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++K ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELKAKREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + + E R ++ + + +
Sbjct: 177 WLTKLFDDVGYVDVFRTLDARPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGIAGTAKR 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFE 121
S R K S H PLT++YD++
Sbjct: 235 TSIF--RDIKFSDHAPLTVDYDYK 256
>gi|229171829|ref|ZP_04299400.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus MM3]
gi|228611649|gb|EEK68900.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus MM3]
Length = 788
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + ++ QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNQFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKILEGTNL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|153823973|ref|ZP_01976640.1| exodeoxyribonuclease III [Vibrio cholerae B33]
gi|126518510|gb|EAZ75733.1| exodeoxyribonuclease III [Vibrio cholerae B33]
Length = 145
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 34/142 (23%), Gaps = 26/142 (18%)
Query: 3 SQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TD 40
+Q L + + V+ GD N +
Sbjct: 3 KRQFYRDLMTYLREHRSNSERLVVMGDINISPLDLDIGIGEANRKRWLQTGKCSFQPEER 62
Query: 41 DFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
++ Q + GL+ F Q R++ D + D + +
Sbjct: 63 EWLQTLLDWGLVDTFRQLHPDVSDQFSWFDYRSRGFEDNRGLRIDVILATPTLAETCQEA 122
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
K S H P+ +
Sbjct: 123 GIDYELRAIDKPSDHAPIWTTF 144
>gi|15892269|ref|NP_359983.1| exodeoxyribonuclease III [Rickettsia conorii str. Malish 7]
gi|15619409|gb|AAL02884.1| exodeoxyribonuclease III [Rickettsia conorii str. Malish 7]
Length = 286
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 13/138 (9%), Positives = 32/138 (23%), Gaps = 23/138 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKM 46
+++W +I GD N + + +
Sbjct: 141 VRLMQEWLTTNRTKNDKMIIVGDLNIAPHEHDVWSSKQLRNVISHTDIERSLLVELQNAL 200
Query: 47 DPDGLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDT 103
F +++ RN R + + ++ +
Sbjct: 201 GFIDSSRHFVSLDEKFYTWWSYRNIDWKK-SNRGRRLDHIWVSDNLKGALFSMHLLSEAR 259
Query: 104 RRSKLSTHCPLTIEYDFE 121
S S H P + ++ +
Sbjct: 260 DWSSPSDHVPYFVTFNLQ 277
>gi|38234604|ref|NP_940371.1| putative exonuclease [Corynebacterium diphtheriae NCTC 13129]
gi|38200868|emb|CAE50573.1| Putative exonuclease [Corynebacterium diphtheriae]
Length = 235
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 30/123 (24%), Gaps = 17/123 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-----------QKMDPDGLLIRF 55
WL +A Q V GDFN D + ++ I
Sbjct: 119 RWL--YALQHYGVTGDTVWCGDFNIAPTDNDVWDIDFFHGKTHVTEPERQAFEALTDIMP 176
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
E + D + + + + + S H P+
Sbjct: 177 ITSPEGYTYWDYTAGRFPKNQGMRIDFQLSNMTPTGGF----IDVEERKGKGASDHAPVV 232
Query: 116 IEY 118
++Y
Sbjct: 233 VDY 235
>gi|327540346|gb|EGF26932.1| exodeoxyribonuclease III [Rhodopirellula baltica WH47]
Length = 256
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 27/130 (20%), Gaps = 23/130 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + + P + GD N I + + +
Sbjct: 131 EAFLDYVKK-LNRRKPVLFCGDVNCAHKEIDLANPKANRKNAGFSDQERAGLDAVTEAGF 189
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+F R+ + F + F
Sbjct: 190 IDSFRQFHDGPGHYSWWTYRSDARARNIGW--RLDYFWVAKKFW--DRVADARIRCEIHG 245
Query: 109 STHCPLTIEY 118
S HCP+ +
Sbjct: 246 SDHCPVELTL 255
>gi|239833024|ref|ZP_04681353.1| exodeoxyribonuclease III (xth) [Ochrobactrum intermedium LMG 3301]
gi|239825291|gb|EEQ96859.1| exodeoxyribonuclease III (xth) [Ochrobactrum intermedium LMG 3301]
Length = 268
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 13/137 (9%), Positives = 29/137 (21%), Gaps = 24/137 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKM 46
E ++ + ++ GD N D +
Sbjct: 134 EEMRAIVADRQDGHSSVLV-GDLNIAPLENDVWSHKQLLKIVSHTPIETETLEDLRVKGG 192
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--YDQSDLDTR 104
D + P +++ R K R +
Sbjct: 193 WSDLMRQLIPADQKIFTWWSYRAKDWA-ESDRGRRLDHVWGSGDLEQHIQGLQILRDARG 251
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ ++ +
Sbjct: 252 WDRPSDHVPVIATFNLD 268
>gi|17986352|ref|NP_538986.1| exodeoxyribonuclease III [Brucella melitensis bv. 1 str. 16M]
gi|189025067|ref|YP_001935835.1| Exodeoxyribonuclease III [Brucella abortus S19]
gi|237816360|ref|ZP_04595353.1| exodeoxyribonuclease III (xth) [Brucella abortus str. 2308 A]
gi|297247235|ref|ZP_06930953.1| exodeoxyribonuclease III [Brucella abortus bv. 5 str. B3196]
gi|17981940|gb|AAL51250.1| exodeoxyribonuclease iii [Brucella melitensis bv. 1 str. 16M]
gi|189020639|gb|ACD73361.1| Exodeoxyribonuclease III [Brucella abortus S19]
gi|237788427|gb|EEP62642.1| exodeoxyribonuclease III (xth) [Brucella abortus str. 2308 A]
gi|297174404|gb|EFH33751.1| exodeoxyribonuclease III [Brucella abortus bv. 5 str. B3196]
Length = 289
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 32/137 (23%), Gaps = 24/137 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKM 46
E ++ + K G ++ GD N D +
Sbjct: 155 EEMRAIIADR-KDGCSSLLVGDLNIAPLENDVWSHKQLLKIVSHTPIETETLEDLRIKGG 213
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--YDQSDLDTR 104
D + +++ R K D R + +
Sbjct: 214 WSDLMRHLIAADQKIYTWWSYRAKDW-DAADRGRRLDHVWGSADLESHNKGLQVLRDARG 272
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ +D +
Sbjct: 273 WDRPSDHVPVIATFDLD 289
>gi|313895351|ref|ZP_07828908.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976246|gb|EFR41704.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 250
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 31/132 (23%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + +++ P V+ GD N I + + +
Sbjct: 124 DAFRAFLLE-LRSKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFGELLAAGF 182
Query: 50 -GLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+K + + FL+
Sbjct: 183 VDTFRALYPDKVGAYTWWSYLRHARETNAGW--RIDYFLVSEELRGRIAAAEIHA--DVF 238
Query: 108 LSTHCPLTIEYD 119
S HCP+++
Sbjct: 239 GSDHCPVSLTLS 250
>gi|148560443|ref|YP_001259818.1| exodeoxyribonuclease III [Brucella ovis ATCC 25840]
gi|225628198|ref|ZP_03786233.1| exodeoxyribonuclease III [Brucella ceti str. Cudo]
gi|148371700|gb|ABQ61679.1| exodeoxyribonuclease III [Brucella ovis ATCC 25840]
gi|225617023|gb|EEH14070.1| exodeoxyribonuclease III [Brucella ceti str. Cudo]
Length = 289
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 31/137 (22%), Gaps = 24/137 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKM 46
E ++ + K G ++ GD N D +
Sbjct: 155 EEMRAIIADR-KDGCSSLLVGDLNIAPLENDVWSHKQLLKIVSHTPIETETLEDLRIKGG 213
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--YDQSDLDTR 104
D + +++ R K D R +
Sbjct: 214 WSDLMRHLIAADQKIYTWWSYRAKDW-DAADRGRRLDHVWGSADLESHIKGLQVLRDARG 272
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ +D +
Sbjct: 273 WDRPSDHVPVIATFDLD 289
>gi|291516724|emb|CBK70340.1| exodeoxyribonuclease III [Bifidobacterium longum subsp. longum F8]
Length = 286
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 20/126 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK---------------MDPDGLLIRFPQE 58
D+ G V+ GDFN + + + + + +
Sbjct: 160 DEAAHGGKQAVLCGDFNIAHTPLDIKNAKANEKHAGFLPEERAYVDKWLDEYEFVDVMRS 219
Query: 59 -----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ +R ++ + D + + + + + T + S H P
Sbjct: 220 LAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETARGFVIDKAPTYELRWSDHAP 279
Query: 114 LTIEYD 119
LTI YD
Sbjct: 280 LTITYD 285
>gi|218438570|ref|YP_002376899.1| endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 7424]
gi|218171298|gb|ACK70031.1| Endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 7424]
Length = 285
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 44/125 (35%), Gaps = 13/125 (10%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINS-IGDTDDFWQKMDPDGLLIRFPQE--- 58
+QQ +L++W ++ +P V GD+N + ++ + D I E
Sbjct: 164 NQQARFLREWGAEQT---LPIVAVGDYNFDYDPQTQSGNEAFDIFLEDDTFIWIRPECLA 220
Query: 59 ----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ S LD+ + + + ++ + ++R S H P+
Sbjct: 221 DNSCPPTGTQCNPTYNSILDFVFVSERATQWDNISDILLIDEPVCEKESRGY--SDHRPV 278
Query: 115 TIEYD 119
+D
Sbjct: 279 VASFD 283
>gi|122934884|gb|ABM68185.1| APEX1 [Lagothrix lagotricha]
Length = 156
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 28 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 86
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ +S ++
Sbjct: 87 LADSFRHLYPNT-AYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 143
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 144 GSDHCPITLYLAL 156
>gi|260430974|ref|ZP_05784945.1| endonuclease/exonuclease/phosphatase family protein [Silicibacter
lacuscaerulensis ITI-1157]
gi|260414802|gb|EEX08061.1| endonuclease/exonuclease/phosphatase family protein [Silicibacter
lacuscaerulensis ITI-1157]
Length = 337
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-----------------TDDFWQKMD 47
Q WL + G P V+ GD N D +
Sbjct: 200 QAVWLSHRVKAHLDAGEPVVLLGDLNDGPGLDEFENLFGRSSVEILLQTGLYDPHAAQAC 259
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK-----NFLIDNSFSIVSYDQSDLD 102
+ + ++ LDY +I D + + + +L
Sbjct: 260 RRRPGWIPSTARFPRPEEGQYLEALLDYIMISPDLRARRPAWRIWHPFRDEHCWSVPELR 319
Query: 103 TRRSKLSTHCPLTIEYDF 120
S H P+T++ D
Sbjct: 320 DALVTASDHFPVTLDIDL 337
>gi|126738695|ref|ZP_01754400.1| exodeoxyribonuclease III, putative [Roseobacter sp. SK209-2-6]
gi|126720494|gb|EBA17200.1| exodeoxyribonuclease III, putative [Roseobacter sp. SK209-2-6]
Length = 276
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 28/133 (21%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W + ++ GD N D + +
Sbjct: 147 MRDWFRSEAPKKS--ILVGDLNIAPREEDVWDHKKMLKVVSHTPIEVEHLAEVQEAGGWQ 204
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSK 107
+ + R K D R + S S K
Sbjct: 205 DVTRADIPDGLLYSWWSYRAKDW-DAADKGRRLDHVWATGDISQSASSSRILRAARGWEK 263
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 264 PSDHAPVFASFDL 276
>gi|152992239|ref|YP_001357960.1| exodeoxyribonuclease III [Sulfurovum sp. NBC37-1]
gi|151424100|dbj|BAF71603.1| exodeoxyribonuclease III [Sulfurovum sp. NBC37-1]
Length = 256
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 30/132 (22%), Gaps = 23/132 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDG 50
E + ++ G +I GD N I + +D
Sbjct: 128 ERFLAYINEVRTEGKSIIICGDVNTAHKEIDLARPKSNENTSGFLPVERAWMDKLLDNGY 187
Query: 51 LLIRFP---QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ E + R K+ F + +
Sbjct: 188 IDTFRYIHGDEPDRYSWWSYRTKARERNVGW--RIDYFFVSDDLKEKI--VDADILDHIM 243
Query: 108 LSTHCPLTIEYD 119
S HCP+ + D
Sbjct: 244 GSDHCPVKLVLD 255
>gi|260219779|emb|CBA26652.1| hypothetical protein Csp_H39670 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 263
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 41/143 (28%), Gaps = 26/143 (18%)
Query: 3 SQQGEWLKKWAD-----QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------- 49
+Q + A+ Q+++ V+ GD N + + K +
Sbjct: 122 ERQAAKFRFLAEFYPHLQQLRAERELVLCGDLNIAHQEVDLKNWKGNKKNSGFLPEERAW 181
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ + C N+ + L + + + +
Sbjct: 182 MSKALSEGGLVDVYRQLEPTATDDCYTWWSNRGQAYAKNVGWRLDYHLATPALAATAKEV 241
Query: 99 SDLDTRRSKLSTHCPLTIEYDFE 121
+ + K S H P+T+ YDF
Sbjct: 242 AIY--KAEKFSDHAPITVSYDFS 262
>gi|239947787|ref|ZP_04699540.1| exodeoxyribonuclease III [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239922063|gb|EER22087.1| exodeoxyribonuclease III [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 279
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 23/138 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT------------DDFWQKMDP----- 48
+++W +I GD N + D +
Sbjct: 141 VRLMQEWLTTNRTKNDKIIIVGDLNIAPHEHDVWSSKQLRNVISHTDIERSLLVELQNSL 200
Query: 49 ---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD--T 103
D P +++ RN R + + ++ + L
Sbjct: 201 GFIDSSRHFVPFDEKFYTWWSYRNIDWKK-SNRGRRLDHIWVSDNLKDALFSMHLLPEAR 259
Query: 104 RRSKLSTHCPLTIEYDFE 121
S H P + ++F+
Sbjct: 260 DWPPPSDHVPYFVNFNFD 277
>gi|228944800|ref|ZP_04107163.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228814828|gb|EEM61086.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 788
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|229120698|ref|ZP_04249941.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus 95/8201]
gi|228662703|gb|EEL18300.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus 95/8201]
Length = 788
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|229169798|ref|ZP_04297495.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH621]
gi|228613648|gb|EEK70776.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH621]
Length = 352
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ + G ++ GD+N+ ++++ +D + K P+ L+ +
Sbjct: 226 IRKQQAEYLKEYMNECYQNGDYVILGGDWNQLLSNVQLSDPKFVKERPEWLVELPKDFAD 285
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 286 GGFQWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 342
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 343 NPVSAVFKLK 352
>gi|229183381|ref|ZP_04310608.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BGSC 6E1]
gi|228600097|gb|EEK57690.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BGSC 6E1]
Length = 788
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|225863033|ref|YP_002748411.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus
03BB102]
gi|225790557|gb|ACO30774.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus 03BB102]
Length = 788
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|170700263|ref|ZP_02891278.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
IOP40-10]
gi|170134847|gb|EDT03160.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
IOP40-10]
Length = 599
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 33/139 (23%), Gaps = 22/139 (15%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ E + W ++ GD N + L+
Sbjct: 463 RAAERVAAWLATSPTGAAADGVLLIGDLNSYAKEDPLRALESRGY---ANLVARFVGNAG 519
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTR 104
V + +LD+ + + ++ D+
Sbjct: 520 YTYVFRGEAGNLDHALATPPLAARVKAVHAWHINADEPIALQAVPDYKTPAQQAAYYAPD 579
Query: 105 RSKLSTHCPLTIEYDFEKG 123
+ S H P+ I+ E+
Sbjct: 580 AYRSSDHDPVVIDLALEEA 598
>gi|196036463|ref|ZP_03103859.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus W]
gi|195990937|gb|EDX54909.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus W]
Length = 788
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|52144237|ref|YP_082591.1| endonuclease/exonuclease/phosphatase [Bacillus cereus E33L]
gi|51977706|gb|AAU19256.1| endonuclease/exonuclease/phosphatase [Bacillus cereus E33L]
Length = 788
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|42780246|ref|NP_977493.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus ATCC 10987]
gi|42736165|gb|AAS40101.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus ATCC
10987]
Length = 788
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|254428681|ref|ZP_05042388.1| exodeoxyribonuclease III [Alcanivorax sp. DG881]
gi|196194850|gb|EDX89809.1| exodeoxyribonuclease III [Alcanivorax sp. DG881]
Length = 271
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 13/140 (9%), Positives = 26/140 (18%), Gaps = 27/140 (19%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
E L+ + + + GDFN + +
Sbjct: 131 EDLQHYLINHHQPSDQVAVMGDFNISSTDLDIGIGEANRKRWLREGKTSFLPEEREWWER 190
Query: 43 WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNK--NFLIDNSFSIVSYDQS 99
+ R+K + +
Sbjct: 191 LVGWGLTDTYRHQNPSTDDVFSWFDYRSKGFDREPRRGLRIDTVLATQPLMAKLDTTGVD 250
Query: 100 DLDTRRSKLSTHCPLTIEYD 119
K S HCP+ ++
Sbjct: 251 YDMRGMEKPSDHCPVWARFN 270
>gi|324325200|gb|ADY20460.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 788
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + ++ QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNQFVQDIQKKNTNAPVVVLGDMNDFEFAKPLKALEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + +++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NTNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|34499249|ref|NP_903464.1| hypothetical protein CV_3794 [Chromobacterium violaceum ATCC 12472]
gi|34105100|gb|AAQ61456.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 637
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 22/135 (16%)
Query: 4 QQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L KWA Q+ ++ GD N + + +K++
Sbjct: 481 QAARDLVKWAKQRGASAKEGLLVMGDMNAYAKEDPIRAFEDGGLSN----LLARFQKDAY 536
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-----------------QSDLDTRR 105
V + +LD+ + D ++ D ++ D Q+
Sbjct: 537 SYVYQGESGNLDHALADASLVKWVADAGEWHINADEPTALEYGSEFKSAEQRQNYYAPDA 596
Query: 106 SKLSTHCPLTIEYDF 120
+ S H PL ++
Sbjct: 597 YRSSDHDPLYVDLQL 611
>gi|254825627|ref|ZP_05230628.1| endonuclease/exonuclease/phosphatase [Listeria monocytogenes FSL
J1-194]
gi|254853407|ref|ZP_05242755.1| endonuclease/exonuclease/phosphatase [Listeria monocytogenes FSL
R2-503]
gi|254992839|ref|ZP_05275029.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes FSL J2-064]
gi|255519856|ref|ZP_05387093.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes FSL J1-175]
gi|300764548|ref|ZP_07074540.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes FSL N1-017]
gi|258606777|gb|EEW19385.1| endonuclease/exonuclease/phosphatase [Listeria monocytogenes FSL
R2-503]
gi|293594872|gb|EFG02633.1| endonuclease/exonuclease/phosphatase [Listeria monocytogenes FSL
J1-194]
gi|300514655|gb|EFK41710.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes FSL N1-017]
Length = 256
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
I P ++ GDFN + N+ + D + + + L
Sbjct: 153 AAIIAENSPVIVLGDFNTQPNTPTYNYITEKYQDAQ---LISQKPAKGPTGSFHDFHP-L 208
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N F + +Y+ + S H P+T D++
Sbjct: 209 RPQNELEKIDYIFVSNEFKVNTYETIVDEVDGFSASDHFPVTANLDWK 256
>gi|288560813|ref|YP_003424299.1| exodeoxyribonuclease III Xth2 [Methanobrevibacter ruminantium M1]
gi|288543523|gb|ADC47407.1| exodeoxyribonuclease III Xth2 [Methanobrevibacter ruminantium M1]
Length = 258
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 35/132 (26%), Gaps = 23/132 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDG 50
+ +A+ G VI GD N I + + +D
Sbjct: 130 DAFLDYANDLRDQGKNLVICGDLNTAHKEIDLARPKQNEDVSGFLPIEREWVSKFLDNGY 189
Query: 51 LLIRFP---QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ EKE R ++ F ++ F +
Sbjct: 190 VDTFRMLHENEKEKYTWWSYRTRARERNVGW--RLDYFFVNEEFKDNVR--ASYIISEVM 245
Query: 108 LSTHCPLTIEYD 119
S HCP+ +E +
Sbjct: 246 GSDHCPIALEIE 257
>gi|296282147|ref|ZP_06860145.1| exonuclease III [Citromicrobium bathyomarinum JL354]
Length = 265
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 35/136 (25%), Gaps = 26/136 (19%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDG 50
E + +WA+ P +I GDFN + MD G
Sbjct: 134 ERMTRWAETV---EQPTLIVGDFNIAPLESDVWSHKQLLKVVSHTPIEVEALQRFMDAHG 190
Query: 51 LLI----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTR 104
P + RN + R + + +
Sbjct: 191 WTDIGREHVPAPERYYSWWSYRNPNWQTN-DKGRRLDHMWASPDLAKQATRHTILEEARN 249
Query: 105 RSKLSTHCPLTIEYDF 120
+ S H PLT E++
Sbjct: 250 WERPSDHVPLTTEFEL 265
>gi|325981921|ref|YP_004294323.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. AL212]
gi|325531440|gb|ADZ26161.1| exodeoxyribonuclease III Xth [Nitrosomonas sp. AL212]
Length = 257
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 34/126 (26%), Gaps = 23/126 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------------GLLI 53
+ ++ GD+N I + + + +
Sbjct: 133 LQNLKISNREIILCGDWNIAHKEIDLKNWRSNQKNSGFLPEEREWLSNVLENSGFIDVFR 192
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
R E + R ++ + + + ++ S + + S H P
Sbjct: 193 RLNAEPDQYTWWSNRGQAWAKNVGW--RIDYQIATPAIAQLAQRVSIY--KDERFSDHAP 248
Query: 114 LTIEYD 119
L I+YD
Sbjct: 249 LIIDYD 254
>gi|238018561|ref|ZP_04598987.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
gi|237865032|gb|EEP66322.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
Length = 251
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 29/133 (21%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P ++ GD N I + + +
Sbjct: 124 DAFRNYLLE-LDKKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTELLGAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ E K+ D I
Sbjct: 183 TDTFRHLYPDAIEEYSWWSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIHQQIFG--- 239
Query: 108 LSTHCPLTIEYDF 120
S HCP+ ++ D
Sbjct: 240 -SDHCPVELDIDL 251
>gi|197106969|ref|YP_002132346.1| exodeoxyribonuclease III [Phenylobacterium zucineum HLK1]
gi|196480389|gb|ACG79917.1| exodeoxyribonuclease III [Phenylobacterium zucineum HLK1]
Length = 268
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 26/132 (19%), Gaps = 26/132 (19%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPDGLLIRF 55
K P + GD N + + L
Sbjct: 137 AKRNPKAPLAVVGDLNVAPGEHDVWNHRYMSKVVSHTPAEVEAFGKLVASLGFIDLPRAQ 196
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-------QSDLDTRRSKL 108
E E + + + L+ ++ D +
Sbjct: 197 TPEPEKVFSWWSYRAADFRASNRGLRLDHILVTPGLKEAAFRLGSAASRVHDDVRAWERP 256
Query: 109 STHCPLTIEYDF 120
S H P+T +
Sbjct: 257 SDHAPVTADLVL 268
>gi|312132556|ref|YP_003999895.1| xtha [Bifidobacterium longum subsp. longum BBMN68]
gi|311773493|gb|ADQ02981.1| XthA [Bifidobacterium longum subsp. longum BBMN68]
Length = 286
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 20/126 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK---------------MDPDGLLIRFPQE 58
D+ G V+ GDFN + + + + + +
Sbjct: 160 DEAAHGGKQAVLCGDFNIAHTPLDIKNAKANEKHAGFLPEERAYVDKWLDEYEFVDVMRS 219
Query: 59 -----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ +R ++ + D + + + + + T + S H P
Sbjct: 220 LAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETARGFVIDKAPTYELRWSDHAP 279
Query: 114 LTIEYD 119
LTI YD
Sbjct: 280 LTITYD 285
>gi|221330655|ref|NP_001137776.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
gi|220901923|gb|ACL82983.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
Length = 706
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 22/131 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDP 48
+ + + + + P VI GD N I + +
Sbjct: 579 KLFQAYVKK-LDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGF 637
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+++ ++ + L+ V +
Sbjct: 638 VDTFRHLYPDRK-GAYTFWTYMANARARNVGWRLDYCLVSE--RFVPKVVEHEIRSQCLG 694
Query: 109 STHCPLTIEYD 119
S HCP+TI ++
Sbjct: 695 SDHCPITIFFN 705
>gi|254457926|ref|ZP_05071353.1| exodeoxyribonuclease III [Campylobacterales bacterium GD 1]
gi|207085319|gb|EDZ62604.1| exodeoxyribonuclease III [Campylobacterales bacterium GD 1]
Length = 249
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 32/128 (25%), Gaps = 23/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
+ ++ + G +I GD N I +
Sbjct: 125 DYCEKLRENGKSIIICGDVNTAHKEIDLKNPKANSKTSGFLPIEREWMDKLVNHGYIDTF 184
Query: 53 IRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++ + R+ + L D D + ++ D S H
Sbjct: 185 RYVNGDEIDRYSWWSYRSGARLKNVGWRIDYFFISEDLAENLEDAFILDYIEG----SDH 240
Query: 112 CPLTIEYD 119
CP+ I+
Sbjct: 241 CPVGIKLS 248
>gi|254828780|ref|ZP_05233467.1| endonuclease/exonuclease/phosphatase [Listeria monocytogenes FSL
N3-165]
gi|258601187|gb|EEW14512.1| endonuclease/exonuclease/phosphatase [Listeria monocytogenes FSL
N3-165]
Length = 256
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
I P +I GDFN + + +K L+ + + R L
Sbjct: 153 AATIAENSPVIILGDFNTEP-DTPTYNFITKKYQDAQLISQKHAKGPIGSFHDFR---PL 208
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ F + +Y+ + S H P+T D++
Sbjct: 209 RSINELEKIDYIFVSEEFQVCTYETIVDEVDGFSASDHFPVTANLDWK 256
>gi|218532288|ref|YP_002423104.1| exodeoxyribonuclease III Xth [Methylobacterium chloromethanicum
CM4]
gi|218524591|gb|ACK85176.1| exodeoxyribonuclease III Xth [Methylobacterium chloromethanicum
CM4]
Length = 269
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/134 (10%), Positives = 35/134 (26%), Gaps = 25/134 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--------------------QKMDP 48
L+ W +++ P ++ GD N +
Sbjct: 139 LRGWGGRRVSG--PAILVGDLNVAPLEHDVWSHKQLLDVVSHTPVETEALETLRGEAGWI 196
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDTRRS 106
D + P+ ++ R+ + R + + + +
Sbjct: 197 DAARLLTPEPEKIYTWWSYRSPNWEL-ANKGRRLDHTWVSPDLAGTVRRVAVFREARGWE 255
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+T+ +
Sbjct: 256 RPSDHVPVTLTLEL 269
>gi|110834346|ref|YP_693205.1| exodeoxyribonuclease III [Alcanivorax borkumensis SK2]
gi|110647457|emb|CAL16933.1| exodeoxyribonuclease III [Alcanivorax borkumensis SK2]
Length = 271
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 34/140 (24%), Gaps = 27/140 (19%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TDDFWQK 45
E L+ + + + GDFN + ++W +
Sbjct: 131 EDLQHYLITHHQPSDQVAVMGDFNISSTDLDIGIGEPNRKRWLREGKTSFLPEEREWWDR 190
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNK--NFLIDNSFSIVSYDQS 99
+ GL F + + R+K + +
Sbjct: 191 LVGWGLTDTFRHQNPTTDDVFSWFDYRSKGFDREPRRGLRIDTVLATEPLMAKLDTTGVD 250
Query: 100 DLDTRRSKLSTHCPLTIEYD 119
K S HCP+ ++
Sbjct: 251 YQMRAMEKPSDHCPVWARFN 270
>gi|23465951|ref|NP_696554.1| exodeoxyribonuclease [Bifidobacterium longum NCC2705]
gi|322689435|ref|YP_004209169.1| exodeoxyribonuclease [Bifidobacterium longum subsp. infantis 157F]
gi|322691402|ref|YP_004220972.1| exodeoxyribonuclease [Bifidobacterium longum subsp. longum JCM
1217]
gi|23326663|gb|AAN25190.1| possible exodeoxyribonuclease [Bifidobacterium longum NCC2705]
gi|320456258|dbj|BAJ66880.1| putative exodeoxyribonuclease [Bifidobacterium longum subsp. longum
JCM 1217]
gi|320460771|dbj|BAJ71391.1| putative exodeoxyribonuclease [Bifidobacterium longum subsp.
infantis 157F]
Length = 286
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 37/126 (29%), Gaps = 20/126 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK---------------MDPDGLLIRFPQE 58
D+ G V+ GDFN + + + + + +
Sbjct: 160 DEAAHGGKQAVLCGDFNIAHTPLDIKNAKANEKHAGFLPEERAYVDKWLDEYEFVDVMRS 219
Query: 59 -----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ +R ++ + D + + + + + T + S H P
Sbjct: 220 LAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETARGFVIDKAPTYELRWSDHAP 279
Query: 114 LTIEYD 119
LTI YD
Sbjct: 280 LTITYD 285
>gi|17136678|ref|NP_476841.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|150421656|sp|P27864|RRP1_DROME RecName: Full=Recombination repair protein 1; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|7295875|gb|AAF51175.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|21428628|gb|AAM49974.1| LP05366p [Drosophila melanogaster]
Length = 679
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 22/131 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDP 48
+ + + + + P VI GD N I + +
Sbjct: 552 KLFQAYVKK-LDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGF 610
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+++ ++ + L+ V +
Sbjct: 611 VDTFRHLYPDRK-GAYTFWTYMANARARNVGWRLDYCLVSE--RFVPKVVEHEIRSQCLG 667
Query: 109 STHCPLTIEYD 119
S HCP+TI ++
Sbjct: 668 SDHCPITIFFN 678
>gi|158340|gb|AAA62769.1| recombination repair protein [Drosophila melanogaster]
gi|3342457|gb|AAC27621.1| recombination repair protein 1 [Drosophila melanogaster]
Length = 679
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 22/131 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDP 48
+ + + + + P VI GD N I + +
Sbjct: 552 KLFQAYVKK-LDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGF 610
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+++ ++ + L+ V +
Sbjct: 611 VDTFRHLYPDRK-GAYTFWTYMANARARNVGWRLDYCLVSE--RFVPKVVEHEIRSQCLG 667
Query: 109 STHCPLTIEYD 119
S HCP+TI ++
Sbjct: 668 SDHCPITIFFN 678
>gi|325920888|ref|ZP_08182783.1| putative extracellular nuclease [Xanthomonas gardneri ATCC 19865]
gi|325548640|gb|EGD19599.1| putative extracellular nuclease [Xanthomonas gardneri ATCC 19865]
Length = 572
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 32/126 (25%), Gaps = 12/126 (9%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L +W D V+ GDFN + Q
Sbjct: 450 ESAKRLHQWLQTDPTGAQTKLAVLLGDFNAYAMESPMRSLRASGWQDAFAVAGVKQP--- 506
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPL 114
V LD+ ++ L ++ D D + S H P+
Sbjct: 507 YSYVYDGMSGRLDHALLSPAMAKQLRGAVEWHINADVMDDAGYAKRNLAGPWRSSDHDPV 566
Query: 115 TIEYDF 120
+ +
Sbjct: 567 LLGFSL 572
>gi|240168902|ref|ZP_04747561.1| putative exodeoxyribonuclease III protein [Mycobacterium kansasii
ATCC 12478]
Length = 276
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 11/120 (9%), Positives = 25/120 (20%), Gaps = 18/120 (15%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD------------DFWQKMDP------DGLLIRFPQ 57
+ +AGD+N + + L+ F
Sbjct: 150 RDDPAAAIALAGDWNIAPTDDDVWSTEFYAGATHVSEPERKAFNAIVDAQFADLVRPFAP 209
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ D + +V + + S H P+ ++
Sbjct: 210 GPGVYTYWDYTQLRFPKRQGMRIDFILGSPALARRVVDAQIVREERKGKAPSDHAPVFVD 269
>gi|229821466|ref|YP_002882992.1| exodeoxyribonuclease III Xth [Beutenbergia cavernae DSM 12333]
gi|229567379|gb|ACQ81230.1| exodeoxyribonuclease III Xth [Beutenbergia cavernae DSM 12333]
Length = 269
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 34/133 (25%), Gaps = 19/133 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
E + G V+AGD N + + + DG
Sbjct: 137 ERVTTRMGDLASRGGFAVVAGDVNVAHRELDIRNWKGNLRSAGFLPEERGYLDRWFADGW 196
Query: 52 LIRFPQE----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + R K+ + D + D + V + +
Sbjct: 197 VDVARAQAGEVDGPYTWWSWRGKAFDNDAGWRIDYQIATSDLAARAVEAVVDRASSYAER 256
Query: 108 LSTHCPLTIEYDF 120
S H PL + YD
Sbjct: 257 FSDHAPLAVAYDL 269
>gi|222094804|ref|YP_002528864.1| endonuclease/exonuclease/phosphatase [Bacillus cereus Q1]
gi|221238862|gb|ACM11572.1| endonuclease/exonuclease/phosphatase [Bacillus cereus Q1]
Length = 788
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTNL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPLHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|206976594|ref|ZP_03237500.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus
H3081.97]
gi|206745277|gb|EDZ56678.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus
H3081.97]
Length = 788
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTNL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPLHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|167766583|ref|ZP_02438636.1| hypothetical protein CLOSS21_01089 [Clostridium sp. SS2/1]
gi|167711706|gb|EDS22285.1| hypothetical protein CLOSS21_01089 [Clostridium sp. SS2/1]
Length = 371
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 43/137 (31%), Gaps = 15/137 (10%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ Q L ++ + G + GDFN + + D D ++ + E
Sbjct: 230 IRKGQIRMLSADMKKEYEAGNYVLCGGDFNHDLKAAEDDDSTDRESWAYPFPRKMLPEHF 289
Query: 61 STCN---------VIKRNKSSLDYFV---IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
S C + + Y F+I ++ Y +
Sbjct: 290 SFCMDQLPKKENLWNSSRNADMKYIPGKTYTVTLDGFIISDNVKCDMYKNINT---GYSY 346
Query: 109 STHCPLTIEYDFEKGNV 125
S H P+ ++++ K +V
Sbjct: 347 SDHDPVYVKFELNKESV 363
>gi|217958656|ref|YP_002337204.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus AH187]
gi|229137866|ref|ZP_04266465.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST26]
gi|217063925|gb|ACJ78175.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus AH187]
gi|228645523|gb|EEL01756.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST26]
Length = 788
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTNL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPLHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|229580822|ref|YP_002839221.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.N.15.51]
gi|228011538|gb|ACP47299.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.N.15.51]
Length = 247
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 26/119 (21%), Gaps = 20/119 (16%)
Query: 16 KIKTGIPFVIAGDFNRKINSIG----------------DTDDFWQKMDPDGLLIRFPQEK 59
K++ P ++ GDFN +I + +
Sbjct: 132 KLRKAKPVILCGDFNIAHQNIDGAFSNPTIPGLTPQERSWFSHFLSLGFIDTFRYLHPNV 191
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K+ ++ L + S H P+ +E
Sbjct: 192 RKYSWWSYMGKARDKNLG--LRLDYCIVSEELKDRIKMADILI--DIQGSDHAPIILEL 246
>gi|115844794|ref|XP_789515.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
gi|115945899|ref|XP_001187208.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 302
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 13/129 (10%), Positives = 32/129 (24%), Gaps = 21/129 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF----------------WQKMDPDGLLI 53
+ + + P + GD N I + + + G +
Sbjct: 177 HAYLKK-LDAKKPVICCGDMNVAHEEIDLKNPKSNRNKTPGFTDQEREGFTSLLDMGFVD 235
Query: 54 RFPQ--EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F +E+ + + +I + + ++ S H
Sbjct: 236 SFRHLYPEEADAYSFWTYMGNCRAKNVGWRLDYGVISKALVPKLC--DNQMRLQTFGSDH 293
Query: 112 CPLTIEYDF 120
CP+ +
Sbjct: 294 CPMVVSLAM 302
>gi|298375899|ref|ZP_06985855.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
gi|298266936|gb|EFI08593.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
Length = 287
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/110 (12%), Positives = 26/110 (23%), Gaps = 5/110 (4%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC--NVIKRNKS 71
+K+ +P ++ GDFN + DP L
Sbjct: 181 AKKLSENLPIIVTGDFNAVPSDEPIQ-VLTNPSDPRHLTHSRTIAGFIYGPEWTFHDFGK 239
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + ++ + S HCP+ E
Sbjct: 240 IPYDKREW--IDYIFVKGNIKVLRHGVLTETLNNLFPSDHCPVISTLILE 287
>gi|261749295|ref|YP_003256980.1| exodeoxyribonuclease III [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497387|gb|ACX83837.1| exodeoxyribonuclease III [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 256
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 30/128 (23%), Gaps = 22/128 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGLLI 53
+ + K VI GD+N + I D + +
Sbjct: 133 YIKKIQKKLKDLVICGDYNICHHEIDIHDPIRNRKISGFLPEERKWMSNFLNLGFIDSFR 192
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ +E + + + ++ S S HCP
Sbjct: 193 NYVKEANHYSWWSYYSNAKKNNKGW--RIDYAMVSRSLKKK--MNKAYLLPEIPYSDHCP 248
Query: 114 LTIEYDFE 121
+E +
Sbjct: 249 TVLEIEIN 256
>gi|171742567|ref|ZP_02918374.1| hypothetical protein BIFDEN_01680 [Bifidobacterium dentium ATCC
27678]
gi|306822478|ref|ZP_07455856.1| exodeoxyribonuclease III [Bifidobacterium dentium ATCC 27679]
gi|309801420|ref|ZP_07695547.1| putative exodeoxyribonuclease III [Bifidobacterium dentium
JCVIHMP022]
gi|171278181|gb|EDT45842.1| hypothetical protein BIFDEN_01680 [Bifidobacterium dentium ATCC
27678]
gi|304554023|gb|EFM41932.1| exodeoxyribonuclease III [Bifidobacterium dentium ATCC 27679]
gi|308221935|gb|EFO78220.1| putative exodeoxyribonuclease III [Bifidobacterium dentium
JCVIHMP022]
Length = 286
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 20/133 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------ 48
E + + D+ G V+ GDFN + + +
Sbjct: 153 ERMGQLRDEAAHGGRQSVLCGDFNIAHTPLDIKNAKANETHAGFLPEERAYVDKWLGELE 212
Query: 49 --DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
D + + +R ++ + D + + + S + T
Sbjct: 213 FVDVMRNLAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAESACGFVIDKAPTYDK 272
Query: 107 KLSTHCPLTIEYD 119
+ S H PLTI YD
Sbjct: 273 RWSDHAPLTITYD 285
>gi|326331009|ref|ZP_08197308.1| exodeoxyribonuclease III [Nocardioidaceae bacterium Broad-1]
gi|325951220|gb|EGD43261.1| exodeoxyribonuclease III [Nocardioidaceae bacterium Broad-1]
Length = 260
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 30/134 (22%), Gaps = 26/134 (19%)
Query: 11 KWADQKIKT-----GIPFVIAGDFNRKINSIGDTDD-----------------FWQKMDP 48
+W K P + GD+N D F + D
Sbjct: 125 EWLAALQKAATAWYDGPSAMVGDWNVCPFDEDCFDPKQFVGKTHLTPAERDAFFAIEKDF 184
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT----R 104
++ F E+ + + D + + +
Sbjct: 185 KDVVRPFVPGPEAYTYFDYYRQRFERNRGLRIDFVLGSPSFASRVTDAFVDLDERNPAIG 244
Query: 105 RSKLSTHCPLTIEY 118
S H P+ ++
Sbjct: 245 TGAPSDHAPVIVDL 258
>gi|329941236|ref|ZP_08290515.1| exodeoxyribonuclease [Streptomyces griseoaurantiacus M045]
gi|329299767|gb|EGG43666.1| exodeoxyribonuclease [Streptomyces griseoaurantiacus M045]
Length = 267
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 22/133 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------- 48
LK+ + G V+ GD+N + + +
Sbjct: 134 LKELRVRAAAEGREVVVCGDWNIAHHEADLKNWRANTKNAGFLPEERAWLSRVLDAEDGG 193
Query: 49 --DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
D + P+ + R ++ + D + V +
Sbjct: 194 YVDVMRALHPEVEGPYTWWSYRGRAFDNDSGWRIDLAVATPGLARRAVKGFVERAASHEE 253
Query: 107 KLSTHCPLTIEYD 119
+ S H P+T+ Y+
Sbjct: 254 RWSDHAPVTVVYE 266
>gi|254831846|ref|ZP_05236501.1| hypothetical protein Lmon1_10855 [Listeria monocytogenes 10403S]
Length = 256
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
I P +I GDFN + + +K L+ + + R L
Sbjct: 153 AATIAENSPVIILGDFNTEP-DTPTYNFITKKYQDAQLISQKRAKGPIGSFHDFR---PL 208
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ F + +Y+ + S H P+T D++
Sbjct: 209 RPINELEKIDYIFVSKEFQVCTYETIVDEVDGFSASDHFPVTANLDWK 256
>gi|34499702|ref|NP_903917.1| exodeoxyribonuclease III [Chromobacterium violaceum ATCC 12472]
gi|34105553|gb|AAQ61907.1| exodeoxyribonuclease III [Chromobacterium violaceum ATCC 12472]
Length = 258
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------------GLL 52
++ G VI GD+N N I + + +
Sbjct: 133 HLEKLRAEGRDIVICGDWNIAHNEIDLKNWKGNLKNSGFLPEERAWMTDLLGRVGWRDVW 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E R ++ ++ S ++ S + K S H
Sbjct: 193 RNLYPEAPGYTWWSNRGQAYAKDVGW--RIDYQIVTPSLMELAESASVY--KDEKFSDHA 248
Query: 113 PLTIEYD 119
PL ++Y
Sbjct: 249 PLIVDYR 255
>gi|57505734|ref|ZP_00371660.1| exodeoxyribonuclease III [Campylobacter upsaliensis RM3195]
gi|57016007|gb|EAL52795.1| exodeoxyribonuclease III [Campylobacter upsaliensis RM3195]
Length = 252
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 30/128 (23%), Gaps = 23/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLL 52
+ ++ +K G +I GD N I T +
Sbjct: 128 AYLNKLLKEGKEVIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLALGFIDTF 187
Query: 53 IRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ + R K+ D + + + S H
Sbjct: 188 REINGDIKEKYSWWSYRMKARERNVGWRIDYFFISKGLKSKLKNAFIKNDIFG----SDH 243
Query: 112 CPLTIEYD 119
P+ IE D
Sbjct: 244 APVGIELD 251
>gi|326523229|dbj|BAJ88655.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 531
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 28/131 (21%), Gaps = 24/131 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + + ++ P ++ GD N I D
Sbjct: 406 LGNYMKE-LEKSKPVILTGDLNCAHQEIDIHDPAGNSRSAGFTKEERKSFETNFLSKGFV 464
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + R+ FL+ S + + S
Sbjct: 465 DTFRKQHPDVVGYSYWGYRHNCRKTNRGW--RLDYFLVSESIAERIH--DSYILPDVSAS 520
Query: 110 THCPLTIEYDF 120
H PL +
Sbjct: 521 DHSPLGLILKL 531
>gi|56698248|ref|YP_168621.1| exodeoxyribonuclease III, putative [Ruegeria pomeroyi DSS-3]
gi|56679985|gb|AAV96651.1| exodeoxyribonuclease III, putative [Ruegeria pomeroyi DSS-3]
Length = 262
Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 30/132 (22%), Gaps = 22/132 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT----------------DDFWQKMDPDGLL 52
++ W ++ GD N D Q MD +
Sbjct: 133 MRDWF--HANAPEKSILVGDLNIAPREDDVWNHKQLLKIVSHTPIEVDHLGQVMDSGKWV 190
Query: 53 IRFPQEKES---TCNVIKRNKSS-LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
Q+ R K D+ D S + S +
Sbjct: 191 DITRQDIPQGLLYSWWSYRAKDWSAADKGRRLDHVWATPDISNAGHSSRILRDARGWEQP 250
Query: 109 STHCPLTIEYDF 120
S H P+ +D
Sbjct: 251 SDHAPVFASFDL 262
>gi|224498832|ref|ZP_03667181.1| hypothetical protein LmonF1_03653 [Listeria monocytogenes Finland
1988]
Length = 256
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
I P +I GDFN + + +K L+ + + R L
Sbjct: 153 AATIAENSPVIILGDFNTEP-DTPTYNFITKKYQDAQLISQKRAKGPIGSFHDFR---PL 208
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ F + +Y+ + S H P+T D++
Sbjct: 209 RPINELEKIDYIFVSEEFQVCTYETIVDEVDGFSASDHFPVTANLDWK 256
>gi|23502852|ref|NP_698979.1| exodeoxyribonuclease III [Brucella suis 1330]
gi|254700641|ref|ZP_05162469.1| exodeoxyribonuclease III [Brucella suis bv. 5 str. 513]
gi|254708986|ref|ZP_05170797.1| exodeoxyribonuclease III [Brucella pinnipedialis B2/94]
gi|254713585|ref|ZP_05175396.1| exodeoxyribonuclease III [Brucella ceti M644/93/1]
gi|254716061|ref|ZP_05177872.1| exodeoxyribonuclease III [Brucella ceti M13/05/1]
gi|256030513|ref|ZP_05444127.1| exodeoxyribonuclease III [Brucella pinnipedialis M292/94/1]
gi|256059974|ref|ZP_05450158.1| exodeoxyribonuclease III [Brucella neotomae 5K33]
gi|260169418|ref|ZP_05756229.1| exodeoxyribonuclease III [Brucella sp. F5/99]
gi|261217826|ref|ZP_05932107.1| exodeoxyribonuclease III Xth [Brucella ceti M13/05/1]
gi|261316482|ref|ZP_05955679.1| exodeoxyribonuclease III Xth [Brucella pinnipedialis B2/94]
gi|261321326|ref|ZP_05960523.1| exodeoxyribonuclease III Xth [Brucella ceti M644/93/1]
gi|261323946|ref|ZP_05963143.1| exodeoxyribonuclease III Xth [Brucella neotomae 5K33]
gi|261751147|ref|ZP_05994856.1| exodeoxyribonuclease III Xth [Brucella suis bv. 5 str. 513]
gi|261758940|ref|ZP_06002649.1| exodeoxyribonuclease III [Brucella sp. F5/99]
gi|265987555|ref|ZP_06100112.1| exodeoxyribonuclease III Xth [Brucella pinnipedialis M292/94/1]
gi|23348878|gb|AAN30894.1| exodeoxyribonuclease III [Brucella suis 1330]
gi|260922915|gb|EEX89483.1| exodeoxyribonuclease III Xth [Brucella ceti M13/05/1]
gi|261294016|gb|EEX97512.1| exodeoxyribonuclease III Xth [Brucella ceti M644/93/1]
gi|261295705|gb|EEX99201.1| exodeoxyribonuclease III Xth [Brucella pinnipedialis B2/94]
gi|261299926|gb|EEY03423.1| exodeoxyribonuclease III Xth [Brucella neotomae 5K33]
gi|261738924|gb|EEY26920.1| exodeoxyribonuclease III [Brucella sp. F5/99]
gi|261740900|gb|EEY28826.1| exodeoxyribonuclease III Xth [Brucella suis bv. 5 str. 513]
gi|264659752|gb|EEZ30013.1| exodeoxyribonuclease III Xth [Brucella pinnipedialis M292/94/1]
Length = 268
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 31/137 (22%), Gaps = 24/137 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKM 46
E ++ + K G ++ GD N D +
Sbjct: 134 EEMRAIIADR-KDGCSSLLVGDLNIAPLENDVWSHKQLLKIVSHTPIETETLEDLRIKGG 192
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--YDQSDLDTR 104
D + +++ R K D R +
Sbjct: 193 WSDLMRHLIAADQKIYTWWSYRAKDW-DAADRGRRLDHVWGSADLESHIKGLQVLRDARG 251
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ +D +
Sbjct: 252 WDRPSDHVPVIATFDLD 268
>gi|62290851|ref|YP_222644.1| exodeoxyribonuclease III [Brucella abortus bv. 1 str. 9-941]
gi|82700763|ref|YP_415337.1| AP endonuclease [Brucella melitensis biovar Abortus 2308]
gi|225853439|ref|YP_002733672.1| exodeoxyribonuclease III [Brucella melitensis ATCC 23457]
gi|254690141|ref|ZP_05153395.1| Exodeoxyribonuclease III [Brucella abortus bv. 6 str. 870]
gi|254694631|ref|ZP_05156459.1| Exodeoxyribonuclease III [Brucella abortus bv. 3 str. Tulya]
gi|254696256|ref|ZP_05158084.1| Exodeoxyribonuclease III [Brucella abortus bv. 2 str. 86/8/59]
gi|254707472|ref|ZP_05169300.1| Exodeoxyribonuclease III [Brucella pinnipedialis M163/99/10]
gi|254731174|ref|ZP_05189752.1| Exodeoxyribonuclease III [Brucella abortus bv. 4 str. 292]
gi|256045604|ref|ZP_05448484.1| Exodeoxyribonuclease III [Brucella melitensis bv. 1 str. Rev.1]
gi|256112331|ref|ZP_05453252.1| Exodeoxyribonuclease III [Brucella melitensis bv. 3 str. Ether]
gi|256258395|ref|ZP_05463931.1| Exodeoxyribonuclease III [Brucella abortus bv. 9 str. C68]
gi|256263081|ref|ZP_05465613.1| exodeoxyribonuclease III [Brucella melitensis bv. 2 str. 63/9]
gi|260546115|ref|ZP_05821855.1| exodeoxyribonuclease III [Brucella abortus NCTC 8038]
gi|260562912|ref|ZP_05833398.1| exodeoxyribonuclease III [Brucella melitensis bv. 1 str. 16M]
gi|260755677|ref|ZP_05868025.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 6 str. 870]
gi|260758902|ref|ZP_05871250.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 4 str. 292]
gi|260760626|ref|ZP_05872969.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 2 str. 86/8/59]
gi|260884704|ref|ZP_05896318.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 9 str. C68]
gi|261214952|ref|ZP_05929233.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 3 str. Tulya]
gi|261314960|ref|ZP_05954157.1| exodeoxyribonuclease III Xth [Brucella pinnipedialis M163/99/10]
gi|265992027|ref|ZP_06104584.1| exodeoxyribonuclease III Xth [Brucella melitensis bv. 1 str. Rev.1]
gi|265993764|ref|ZP_06106321.1| exodeoxyribonuclease III Xth [Brucella melitensis bv. 3 str. Ether]
gi|62196983|gb|AAX75283.1| Xth-2, exodeoxyribonuclease III [Brucella abortus bv. 1 str. 9-941]
gi|82616864|emb|CAJ11960.1| AP endonuclease, family 1:Exodeoxyribonuclease III
xth:Endonuclease/exonuclease/phosphatase family
[Brucella melitensis biovar Abortus 2308]
gi|225641804|gb|ACO01718.1| exodeoxyribonuclease III [Brucella melitensis ATCC 23457]
gi|260096222|gb|EEW80098.1| exodeoxyribonuclease III [Brucella abortus NCTC 8038]
gi|260152928|gb|EEW88020.1| exodeoxyribonuclease III [Brucella melitensis bv. 1 str. 16M]
gi|260669220|gb|EEX56160.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 4 str. 292]
gi|260671058|gb|EEX57879.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 2 str. 86/8/59]
gi|260675785|gb|EEX62606.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 6 str. 870]
gi|260874232|gb|EEX81301.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 9 str. C68]
gi|260916559|gb|EEX83420.1| exodeoxyribonuclease III Xth [Brucella abortus bv. 3 str. Tulya]
gi|261303986|gb|EEY07483.1| exodeoxyribonuclease III Xth [Brucella pinnipedialis M163/99/10]
gi|262764745|gb|EEZ10666.1| exodeoxyribonuclease III Xth [Brucella melitensis bv. 3 str. Ether]
gi|263003093|gb|EEZ15386.1| exodeoxyribonuclease III Xth [Brucella melitensis bv. 1 str. Rev.1]
gi|263092973|gb|EEZ17134.1| exodeoxyribonuclease III [Brucella melitensis bv. 2 str. 63/9]
gi|326410001|gb|ADZ67066.1| Exodeoxyribonuclease III [Brucella melitensis M28]
gi|326539718|gb|ADZ87933.1| exodeoxyribonuclease III [Brucella melitensis M5-90]
Length = 268
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 32/137 (23%), Gaps = 24/137 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKM 46
E ++ + K G ++ GD N D +
Sbjct: 134 EEMRAIIADR-KDGCSSLLVGDLNIAPLENDVWSHKQLLKIVSHTPIETETLEDLRIKGG 192
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--YDQSDLDTR 104
D + +++ R K D R + +
Sbjct: 193 WSDLMRHLIAADQKIYTWWSYRAKDW-DAADRGRRLDHVWGSADLESHNKGLQVLRDARG 251
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ +D +
Sbjct: 252 WDRPSDHVPVIATFDLD 268
>gi|146340267|ref|YP_001205315.1| exodeoxyribonuclease III [Bradyrhizobium sp. ORS278]
gi|146193073|emb|CAL77084.1| exodeoxyribonuclease III (Exonuclease III) (EXO III) (AP
endonuclease VI) [Bradyrhizobium sp. ORS278]
Length = 262
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 32/128 (25%), Gaps = 18/128 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGL 51
+ L K A + IK +P V+AGD+N + + + G
Sbjct: 126 KRLHKHAAKFIKDDLPVVLAGDYNVAPTPLDIYPTKSWDKDALIQPKSRAAYAALVNQGW 185
Query: 52 L---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + D+ + + +
Sbjct: 186 CDAIRTLHPDAPMFTFWDYKRNRWPRDAGLRLDHLLLSPQLAPRLKTAGVDRAIRGEDGA 245
Query: 109 STHCPLTI 116
S H P I
Sbjct: 246 SDHAPAWI 253
>gi|227505913|ref|ZP_03935962.1| exonuclease III [Corynebacterium striatum ATCC 6940]
gi|227197435|gb|EEI77483.1| exonuclease III [Corynebacterium striatum ATCC 6940]
Length = 269
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 19/131 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL- 51
L ++A+ + ++ GDFN D +Q ++ GL
Sbjct: 135 ALARYAESR--AQSKLLLTGDFNIAPRDEDVWDIEAFRGKTHVTEPERAAFQMLEEAGLE 192
Query: 52 -LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ R E++ ++ + D + + ++ S ++ K S
Sbjct: 193 EVTRRFTEEQRWTYFDYKSLRFQKNEGMRIDFQLASRSLAATVQSAQVDMVERAGDKTSD 252
Query: 111 HCPLTIEYDFE 121
HC L +YD
Sbjct: 253 HCLLLADYDLP 263
>gi|255036167|ref|YP_003086788.1| Endonuclease/exonuclease/phosphatase [Dyadobacter fermentans DSM
18053]
gi|254948923|gb|ACT93623.1| Endonuclease/exonuclease/phosphatase [Dyadobacter fermentans DSM
18053]
Length = 280
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 10/107 (9%), Positives = 30/107 (28%), Gaps = 6/107 (5%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I ++ GDFN + ++ + + S
Sbjct: 180 KEIAGNSTAILTGDFNSTPETEQIKTLGAA-LNDTHDVTKQAPYGPEGT-----FNSFKF 233
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + ++ Y + S H P+ ++ + +
Sbjct: 234 DAPMKARIDYIFVSKNVDVLKYGVLTDSKEQRYPSDHQPVLVKIEIK 280
>gi|218902274|ref|YP_002450108.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus AH820]
gi|218539755|gb|ACK92153.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus AH820]
Length = 788
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + +++ ++S H P+ ++ D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NTNIMKEHGRVSDHDPVLVQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|119026076|ref|YP_909921.1| exodeoxyribonuclease [Bifidobacterium adolescentis ATCC 15703]
gi|154488848|ref|ZP_02029697.1| hypothetical protein BIFADO_02156 [Bifidobacterium adolescentis
L2-32]
gi|118765660|dbj|BAF39839.1| possible exodeoxyribonuclease [Bifidobacterium adolescentis ATCC
15703]
gi|154082985|gb|EDN82030.1| hypothetical protein BIFADO_02156 [Bifidobacterium adolescentis
L2-32]
Length = 286
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 20/126 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLIR 54
D+ G V+ GDFN + + + ++ ++
Sbjct: 160 DEAAHGGKQAVLCGDFNIAHTPLDIKNAKANEKHAGFLPEERAYVDKWLGELEFVDVMRS 219
Query: 55 FPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ + +R ++ + D + + + + + T + S H P
Sbjct: 220 LCGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETARGFVIDKAPTYDLRWSDHAP 279
Query: 114 LTIEYD 119
L+I YD
Sbjct: 280 LSITYD 285
>gi|325000932|ref|ZP_08122044.1| exodeoxyribonuclease III [Pseudonocardia sp. P1]
Length = 281
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 37/136 (27%), Gaps = 19/136 (13%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKM 46
L G+ L+ + TG V+AGD+N + ++ +
Sbjct: 136 LKTFGDHLRTAFARCAATGREMVVAGDWNIAPTEQDLRNWRNNQRNSGFLPHEREWFAGL 195
Query: 47 DPDGLLI----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
G P R ++ + D+ + +
Sbjct: 196 LEHGWTDVVRALHPGTDGPYSWWTYRGRAFDNDVGWRIDHLLTTPGLAAAAHEAVVERAP 255
Query: 103 TRRSKLSTHCPLTIEY 118
+ ++ S H P+ +
Sbjct: 256 SHDTRWSDHAPVVVRL 271
>gi|126728921|ref|ZP_01744736.1| endonuclease/exonuclease/phosphatase family protein [Sagittula
stellata E-37]
gi|126710851|gb|EBA09902.1| endonuclease/exonuclease/phosphatase family protein [Sagittula
stellata E-37]
Length = 333
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 25/140 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKI--------------------NSIGDTDDFWQ 44
Q WL+ D + G ++ GD N D
Sbjct: 193 QAIWLRARIDALLADGQSLIVMGDLNDGPGLDEFESLFGRSSVEIVLGQGDTALYDPHAA 252
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSYDQS 99
+ + + + + ++ LDY ++ D + + +
Sbjct: 253 EALSRRIGAQPATSRFFIEPENRYLQALLDYVMVSPDLMARQPDWRIWHPFDNPRCWRDP 312
Query: 100 DLDTRRSKLSTHCPLTIEYD 119
L S H P+T++ +
Sbjct: 313 ALREALLTASDHFPVTLDLE 332
>gi|291533503|emb|CBL06616.1| exodeoxyribonuclease III (xth) [Megamonas hypermegale ART12/1]
Length = 151
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 34/132 (25%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P V+ GD N I + +
Sbjct: 24 DAFRNYLVE-LNKQKPVVMCGDLNVAHKEIDLKNPKTNRRSAGFTDEERSKMTELLQAGF 82
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+K S K+ + D D +I +
Sbjct: 83 VDTFRYLYPDKTSIYSWWSYMRKARENNAGWRIDYFIVSKDIETNIKEAGIHNEFFG--- 139
Query: 108 LSTHCPLTIEYD 119
S HCP+++E D
Sbjct: 140 -SDHCPVSLELD 150
>gi|327441388|dbj|BAK17753.1| predicted extracellular nuclease [Solibacillus silvestris StLB046]
Length = 1177
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 42/122 (34%), Gaps = 9/122 (7%)
Query: 4 QQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + + D+ + V+AGD N + + ++ ++
Sbjct: 945 ELAQVINDFIDEGLAKDPDVNIVVAGDMNDFEFTPALETLKGGVL---TNMVDKAPVEDR 1001
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N LD+ ++ + + I ++ + + S H P+ ++ D +
Sbjct: 1002 FSYYFQGNNQVLDHILVSNNLAEVTEIDMIHI----NANFTEAQGRASDHDPVLVQIDLK 1057
Query: 122 KG 123
G
Sbjct: 1058 SG 1059
>gi|326560422|gb|EGE10804.1| catabolite repression control protein [Moraxella catarrhalis 7169]
gi|326565843|gb|EGE16005.1| catabolite repression control protein [Moraxella catarrhalis BC1]
gi|326571181|gb|EGE21205.1| catabolite repression control protein [Moraxella catarrhalis BC7]
Length = 336
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/130 (9%), Positives = 31/130 (23%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDG 50
+ Q ++ GD+N I + + ++
Sbjct: 211 RHILKQWRDENKSLIVCGDYNIVHKRIDIKNWSGNQKASGCLPHERAWLDHIYDELGYVD 270
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ + R ++ + + + + S S
Sbjct: 271 TFRVVRKDADIYSWWSNRGQARAKNVGW--RIDYHACSPDWKKRTLNA--WVYKDSWFSD 326
Query: 111 HCPLTIEYDF 120
H P+ I+Y
Sbjct: 327 HAPVIIDYQL 336
>gi|161619921|ref|YP_001593808.1| exodeoxyribonuclease III (xth) [Brucella canis ATCC 23365]
gi|254705010|ref|ZP_05166838.1| exodeoxyribonuclease III [Brucella suis bv. 3 str. 686]
gi|260567518|ref|ZP_05837988.1| exodeoxyribonuclease III [Brucella suis bv. 4 str. 40]
gi|261755709|ref|ZP_05999418.1| exodeoxyribonuclease III Xth [Brucella suis bv. 3 str. 686]
gi|161336732|gb|ABX63037.1| exodeoxyribonuclease III (xth) [Brucella canis ATCC 23365]
gi|260157036|gb|EEW92116.1| exodeoxyribonuclease III [Brucella suis bv. 4 str. 40]
gi|261745462|gb|EEY33388.1| exodeoxyribonuclease III Xth [Brucella suis bv. 3 str. 686]
Length = 268
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 31/137 (22%), Gaps = 24/137 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKM 46
E ++ + K G ++ GD N D +
Sbjct: 134 EEMRAIIADR-KDGCSSLLIGDLNIAPLENDVWSHKQLLKIVSHTPIETETLEDLRIKGG 192
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--YDQSDLDTR 104
D + +++ R K D R +
Sbjct: 193 WSDLMRHLIAADQKIYTWWSYRAKDW-DAADRGRRLDHVWGSADLESHIKGLQVLRDARG 251
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ +D +
Sbjct: 252 WDRPSDHVPVIATFDLD 268
>gi|239792809|dbj|BAH72703.1| ACYPI007473 [Acyrthosiphon pisum]
Length = 175
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 32/126 (25%), Gaps = 20/126 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
E +K+ + + T P V+ GD N I + + G
Sbjct: 48 EAFRKYLKE-LDTKKPVVLTGDLNVAHEEIDIANPKTNTKSAGFTKEERDNMSLLLEQGF 106
Query: 52 LIRFPQ--EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ F +++ + + F+ F S
Sbjct: 107 VDTFRTLNPEKTGAYTFWTYFHNSRAKNVGWRLDYFITSKRFMDNVC--DSTIRNEVLGS 164
Query: 110 THCPLT 115
HCP+
Sbjct: 165 DHCPIV 170
>gi|222823091|ref|YP_002574664.1| exodeoxyribonuclease III [Campylobacter lari RM2100]
gi|222538312|gb|ACM63413.1| exodeoxyribonuclease III [Campylobacter lari RM2100]
Length = 252
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLI 53
+ D+ +K G +I GD N I T ++
Sbjct: 129 YLDKLLKEGKEIIICGDVNTAHREIDLTHPKANEKTSGFLPIERAWIDDLLELGFVDTFR 188
Query: 54 RFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + R K+ D + + S H
Sbjct: 189 YVNGDIKEKYSWWSYRMKARERNVGWRIDYFFISNGLKDKLKNAFI----RDDIFGSDHA 244
Query: 113 PLTIEYD 119
P+ IE D
Sbjct: 245 PVGIEID 251
>gi|326577094|gb|EGE26988.1| catabolite repression control protein [Moraxella catarrhalis O35E]
Length = 335
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 12/130 (9%), Positives = 31/130 (23%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDG 50
+ Q ++ GD+N I + + ++
Sbjct: 210 RHILKQWRDENKSLIVCGDYNIVHKRIDIKNWSGNQKASGCLPHERAWLDHIYDELGYVD 269
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ + R ++ + + + + S S
Sbjct: 270 TFRVVRKDADIYSWWSNRGQARAKNVGW--RIDYHACSPDWKKRTLNA--WVYKDSWFSD 325
Query: 111 HCPLTIEYDF 120
H P+ I+Y
Sbjct: 326 HAPVIIDYQL 335
>gi|260578461|ref|ZP_05846375.1| exodeoxyribonuclease III [Corynebacterium jeikeium ATCC 43734]
gi|258603483|gb|EEW16746.1| exodeoxyribonuclease III [Corynebacterium jeikeium ATCC 43734]
Length = 266
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 11/134 (8%), Positives = 34/134 (25%), Gaps = 20/134 (14%)
Query: 7 EWLKKWAD------QKIKTGIPFVIAGDFNRKINSIGDTD-------------DFWQKMD 47
+ L +A + K+ + GD+N D + +
Sbjct: 131 DALAAYAAGSGVGASQRKSSEKLCLVGDYNIAPRDEDVWDRSYFDGRTHVTPNERARLRA 190
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + + ++ + + + +
Sbjct: 191 LEDAGLSAATDLIADEYTYWDYQAMRFQKGEGMRIDLQY-ARGITPTAARVDRDERKGKG 249
Query: 108 LSTHCPLTIEYDFE 121
S H P+ ++Y+ +
Sbjct: 250 ASDHAPVIVDYNVD 263
>gi|227829121|ref|YP_002830900.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.S.2.15]
gi|229577921|ref|YP_002836319.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.G.57.14]
gi|238618580|ref|YP_002913405.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.4]
gi|284996506|ref|YP_003418273.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.D.8.5]
gi|227455568|gb|ACP34255.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.S.2.15]
gi|228008635|gb|ACP44397.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.G.57.14]
gi|238379649|gb|ACR40737.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.4]
gi|284444401|gb|ADB85903.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.D.8.5]
Length = 247
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 26/119 (21%), Gaps = 20/119 (16%)
Query: 16 KIKTGIPFVIAGDFNRKINSIG----------------DTDDFWQKMDPDGLLIRFPQEK 59
K++ P ++ GDFN +I + +
Sbjct: 132 KLRKAKPVILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFSHFLSLGFIDTFRYLHPNV 191
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K+ ++ L + S H P+ +E
Sbjct: 192 RKYSWWSYMGKAREKNLG--LRLDYCIVSEELKDRIKMADILI--DIQGSDHAPIILEL 246
>gi|209551337|ref|YP_002283254.1| exodeoxyribonuclease III Xth [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209537093|gb|ACI57028.1| exodeoxyribonuclease III Xth [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 267
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 30/131 (22%), Gaps = 21/131 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDG 50
K + ++ GD N + D
Sbjct: 137 KLLKANGEANTSAILVGDLNIAPLEHDVWSHKQLLKIVSHTPVETDGLLEVMKRGNWLDL 196
Query: 51 LLIRFPQEKESTCNVIKRNKSS-LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ P+ ++ R K D+ D + + + S
Sbjct: 197 MRQHVPESEKLYTWWSYRAKDWEAADRGRRLDHIWSSSDLGPHLKRIEILKEARGWDRPS 256
Query: 110 THCPLTIEYDF 120
H P+T +DF
Sbjct: 257 DHVPVTAHFDF 267
>gi|170743018|ref|YP_001771673.1| exodeoxyribonuclease III Xth [Methylobacterium sp. 4-46]
gi|168197292|gb|ACA19239.1| exodeoxyribonuclease III Xth [Methylobacterium sp. 4-46]
Length = 269
Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 38/136 (27%), Gaps = 23/136 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQK 45
+ L+ W ++ P ++ GD N +
Sbjct: 136 MDELRAWGGKR--PTGPAILVGDLNVAPLEHDVWSHRQLLDVVSHTPVETERLETLRGEA 193
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
D + P+ ++ R+ D+ D + S+ + +
Sbjct: 194 GWVDTMRHLRPEPEKIYTWWSYRSPDWAAADKGRRLDHIWVTADLAGSVKAVTVARHARA 253
Query: 105 RSKLSTHCPLTIEYDF 120
+ S H P+T+E D
Sbjct: 254 WERPSDHVPVTVELDL 269
>gi|254452861|ref|ZP_05066298.1| endonuclease/exonuclease/phosphatase [Octadecabacter antarcticus
238]
gi|198267267|gb|EDY91537.1| endonuclease/exonuclease/phosphatase [Octadecabacter antarcticus
238]
Length = 333
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/142 (11%), Positives = 36/142 (25%), Gaps = 26/142 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------------DDFW 43
Q WL++ + + ++ GDFN D
Sbjct: 192 QCIWLRRRVEAHLAAEDNLIVLGDFNDGPGLDEYEKLFGRSGVEIVLGEGEGEQLFDPHA 251
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV-----IDRDNKNFLIDNSFSIVSYDQ 98
+ + + + + + LDY + + ++ +
Sbjct: 252 RMALSQRIGAVPVTARFTVGPDRRFLSALLDYIMVSQGVRTMGAEWAIMHPFDDPKCFAD 311
Query: 99 SDLDTRRSKLSTHCPLTIEYDF 120
DL S H P+ ++
Sbjct: 312 KDLCAALLTASDHFPVVLDIPL 333
>gi|82913491|ref|XP_728665.1| exodeoxyribonuclease III [Plasmodium yoelii yoelii str. 17XNL]
gi|23485131|gb|EAA20230.1| exodeoxyribonuclease III [Plasmodium yoelii yoelii]
Length = 271
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 23/128 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLL 52
+ D ++G ++ GD+N I + +++
Sbjct: 146 FLDDCARSGRQYIFCGDWNIAHKPIDLKNWRSNQKNSGFLPEERAWLDRVFEEAGWVDAF 205
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E E R ++ ++ + + + + S H
Sbjct: 206 RAVNPEPEQYTWWSNRGQAWAKNVGW--RIDYQVVSPGLRELIRSAAIY--KEERFSDHA 261
Query: 113 PLTIEYDF 120
PL I+YD
Sbjct: 262 PLIIDYDL 269
>gi|326561625|gb|EGE11962.1| catabolite repression control protein [Moraxella catarrhalis
103P14B1]
gi|326562589|gb|EGE12900.1| catabolite repression control protein [Moraxella catarrhalis
46P47B1]
gi|326564034|gb|EGE14278.1| catabolite repression control protein [Moraxella catarrhalis
12P80B1]
gi|326570498|gb|EGE20538.1| catabolite repression control protein [Moraxella catarrhalis BC8]
gi|326575630|gb|EGE25553.1| catabolite repression control protein [Moraxella catarrhalis CO72]
Length = 336
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/130 (9%), Positives = 31/130 (23%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDG 50
+ Q ++ GD+N I + + ++
Sbjct: 211 RHILKQWRDENKSLIVCGDYNIVHKRIDIKNWSGNQKASGCLPHERAWLDHIYDELGYVD 270
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ + R ++ + + + + S S
Sbjct: 271 TFRVVRKDADIYSWWSNRGQARAKNVGW--RIDYHACSPDWKKRTLNA--WVYKDSWFSD 326
Query: 111 HCPLTIEYDF 120
H P+ I+Y
Sbjct: 327 HAPVIIDYQL 336
>gi|323476236|gb|ADX81474.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus HVE10/4]
Length = 247
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 26/119 (21%), Gaps = 20/119 (16%)
Query: 16 KIKTGIPFVIAGDFNRKINSIG----------------DTDDFWQKMDPDGLLIRFPQEK 59
K++ P ++ GDFN +I + +
Sbjct: 132 KLRKAKPVILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFSHFLSLGFIDTFRYLHPNV 191
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K+ ++ L + S H P+ +E
Sbjct: 192 RKYSWWSYMGKAREKNLG--LRLDYCIVSEELKDRIKMADILI--DIQGSDHAPIILEL 246
>gi|152979045|ref|YP_001344674.1| exodeoxyribonuclease III [Actinobacillus succinogenes 130Z]
gi|150840768|gb|ABR74739.1| exodeoxyribonuclease III [Actinobacillus succinogenes 130Z]
Length = 266
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/136 (11%), Positives = 30/136 (22%), Gaps = 26/136 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD-------------------------TDDFW 43
L+++ + + VI GD N + +
Sbjct: 132 LRRYVAEDLPCD-NVVIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWYQHLY 190
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
D P + R+K + + D+ +
Sbjct: 191 DLGLEDTFRKLNPTASDKFSWFDYRSKGFNENRGLRIDHILANTKLAEHCTETGIDLTIR 250
Query: 104 RRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 251 AMEKPSDHAPIWAVFS 266
>gi|83942866|ref|ZP_00955326.1| endonuclease/exonuclease/phosphatase family protein [Sulfitobacter
sp. EE-36]
gi|83845874|gb|EAP83751.1| endonuclease/exonuclease/phosphatase family protein [Sulfitobacter
sp. EE-36]
Length = 341
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 37/142 (26%), Gaps = 26/142 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-------------QKMDPDGL 51
Q WL++ D ++ G P ++ GD N D F + +
Sbjct: 196 QAIWLRRRIDARLDDGTPLMVLGDLNDGPGLDSFEDLFGRSSVEIVMGHRQDRALVDPHA 255
Query: 52 LIRFPQEKESTCNVIKRNKSSLD-------------YFVIDRDNKNFLIDNSFSIVSYDQ 98
+ Q + + + + + +
Sbjct: 256 IRALGQRIGAMPTTSRFWIAPEKRYLQALLDYIMISPALTAHRPHWRIWHPLDDPECWGD 315
Query: 99 SDLDTRRSKLSTHCPLTIEYDF 120
+ L S H P+TI+ D
Sbjct: 316 AALRDALITASDHFPVTIDLDL 337
>gi|217969119|ref|YP_002354353.1| exodeoxyribonuclease III Xth [Thauera sp. MZ1T]
gi|217506446|gb|ACK53457.1| exodeoxyribonuclease III Xth [Thauera sp. MZ1T]
Length = 260
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 37/128 (28%), Gaps = 21/128 (16%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLL 52
DQ ++G V+ GD+N + + + +
Sbjct: 133 HMDQLFQSGQEVVVCGDWNIAHREADLKNWKSNQKNSGFLPEERAWLGRLFDEQGWIDVY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
R E C N+ + + + Q+ + + S H
Sbjct: 193 RRLHPEATEACYTWWSNRGQAWAKNVGWRLDYQVATPGLAAS--AQAAEVYKAQRFSDHA 250
Query: 113 PLTIEYDF 120
PLT++YD+
Sbjct: 251 PLTVDYDW 258
>gi|153871651|ref|ZP_02000768.1| Endonuclease/exonuclease/phosphatase [Beggiatoa sp. PS]
gi|152071885|gb|EDN69234.1| Endonuclease/exonuclease/phosphatase [Beggiatoa sp. PS]
Length = 257
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLL 52
+ + + +++ GD+N I + + +
Sbjct: 132 YLRELQASPKEYILCGDWNIAHKQIDLKNWRSNQNHSGFLPEERAWMDELFGPVRFADAF 191
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
QE E R ++ + D + + + S + + S H
Sbjct: 192 RVINQESEQYTWWSHRGRAWDNNTGWRIDYQVITPGLTEKVKSASI----YKEKRFSDHA 247
Query: 113 PLTIEYD 119
PLT++Y+
Sbjct: 248 PLTVDYE 254
>gi|291457695|ref|ZP_06597085.1| exodeoxyribonuclease III [Bifidobacterium breve DSM 20213]
gi|291380748|gb|EFE88266.1| exodeoxyribonuclease III [Bifidobacterium breve DSM 20213]
Length = 286
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 42/139 (30%), Gaps = 24/139 (17%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK--------------- 45
ML++ L+ + G V+ GDFN + + +
Sbjct: 151 MLAR-MGALRD---EAAHGGKQAVLCGDFNIAHTPLDIKNAKANEKHAGFLPEERAYVDK 206
Query: 46 MDPDGLLIRFPQE-----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ + + + +R ++ + D + + + + +
Sbjct: 207 WLDEYEFVDVMRSLAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETARGFVIDK 266
Query: 101 LDTRRSKLSTHCPLTIEYD 119
T + S H PLTI Y+
Sbjct: 267 APTYDKRWSDHAPLTITYE 285
>gi|325960168|ref|YP_004291634.1| exodeoxyribonuclease iii Xth [Methanobacterium sp. AL-21]
gi|325331600|gb|ADZ10662.1| exodeoxyribonuclease III Xth [Methanobacterium sp. AL-21]
Length = 257
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 31/128 (24%), Gaps = 22/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
++AD+ G V+ GD N I
Sbjct: 134 EYADELKDQGKNIVVCGDVNTAHREIDLAHPKENSKISGFLPEERAWIDKLLDHGYVDTF 193
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
F QE E R ++ F ++ F L S HC
Sbjct: 194 REFNQEPEEYTWWSYRTRARERNVGW--RLDYFFVNRDFMKNVSAAYILP--EVMGSDHC 249
Query: 113 PLTIEYDF 120
P+ I+
Sbjct: 250 PVGIDVIL 257
>gi|260655439|ref|ZP_05860927.1| exodeoxyribonuclease III [Jonquetella anthropi E3_33 E1]
gi|260629887|gb|EEX48081.1| exodeoxyribonuclease III [Jonquetella anthropi E3_33 E1]
Length = 259
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 33/132 (25%), Gaps = 20/132 (15%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD-----------------PDG 50
L ++ + GD N + T+ +K
Sbjct: 129 RLSGLVAARLPGN--VLWVGDLNVAPTPLDVTNPTNKKDHVCFIQELRDLYALKTSALVD 186
Query: 51 LLIRFPQEKESTCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
LL RF +E R + D+ + + K S
Sbjct: 187 LLRRFHDGEELYSFFDYRVKNALERNIGWRIDHMLASPALAGLCRNCWIDKEPRGWEKPS 246
Query: 110 THCPLTIEYDFE 121
H P+ ++D E
Sbjct: 247 DHTPMLADFDLE 258
>gi|254441056|ref|ZP_05054549.1| endonuclease/exonuclease/phosphatase family [Octadecabacter
antarcticus 307]
gi|198251134|gb|EDY75449.1| endonuclease/exonuclease/phosphatase family [Octadecabacter
antarcticus 307]
Length = 333
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 26/140 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------------DDFW 43
Q WL++ + ++ G ++ GDFN D
Sbjct: 192 QCIWLRRRVEAQLAAGDNLIVLGDFNDGPGLDEYEKLFGRSGVEIVLGEGQGEQLFDPHA 251
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV-----IDRDNKNFLIDNSFSIVSYDQ 98
+ + + + + + LDY + K ++ +
Sbjct: 252 RMALSQQIGAAPVTARFTVGPDRRFLSALLDYIMVSQSVRAMGAKWVIMHPFDDPKCFAD 311
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
DL S H P+ ++
Sbjct: 312 KDLCAALLTASDHFPVVLDI 331
>gi|32491120|ref|NP_871374.1| exonuclease III [Wigglesworthia glossinidia endosymbiont of
Glossina brevipalpis]
gi|25166327|dbj|BAC24517.1| xthA [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 267
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 24/133 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQKMD 47
+ ++ + + +I GD N + K
Sbjct: 135 FLNKFYEKNMHILIMGDMNISPEDLDVGLSLTSYKRWLSIGKCSFLPEEREWIKKIFKWG 194
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ +K+ R++ + + D I K
Sbjct: 195 FVDVFRFLNPDKKKFSWFDYRSEGYIKNVGLRIDLFLSTFSLLSYIEESGMIYSIRSMDK 254
Query: 108 LSTHCPLTIEYDF 120
S H P+ I+ +F
Sbjct: 255 TSDHVPIWIKLNF 267
>gi|23097914|ref|NP_691380.1| hypothetical protein OB0459 [Oceanobacillus iheyensis HTE831]
gi|22776138|dbj|BAC12415.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 402
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 4/117 (3%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ E + + + IP V+ GDFN + S + D + E
Sbjct: 179 KSAELIAERLND-FDEDIPVVLTGDFNTPLESESHQILTADDLFEDPWETAEEKINEDLG 237
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
N + + ++++ S + + S H P+ E ++
Sbjct: 238 TFNGFNDA---TGGGADNKIDWVLTKGIDTKSVEIDNYQNNGYFPSDHYPVITELNY 291
>gi|90422719|ref|YP_531089.1| exodeoxyribonuclease III (xth) [Rhodopseudomonas palustris BisB18]
gi|90104733|gb|ABD86770.1| Exodeoxyribonuclease III [Rhodopseudomonas palustris BisB18]
Length = 256
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGL 51
+ L A + ++ +P V+AGDFN ++ + ++ G
Sbjct: 126 KRLAGHARKLLRQDVPVVLAGDFNVAPTALDIYPTRSWDHDALVQPASRAAFARLVKQGW 185
Query: 52 LIRF---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + + D+ + + R
Sbjct: 186 TDALRELHPDRRIYTFWHYMRQRYERDAGLRLDHLLLSPQLAPRLRQAGVDRAVRGRPGA 245
Query: 109 STHCPLTIEY 118
S H P I
Sbjct: 246 SDHAPTWIVL 255
>gi|330466241|ref|YP_004403984.1| endonuclease/exonuclease/phosphatase [Verrucosispora maris
AB-18-032]
gi|328809212|gb|AEB43384.1| endonuclease/exonuclease/phosphatase [Verrucosispora maris
AB-18-032]
Length = 650
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 20/119 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + ++A + G P V+AGDFN + D + + GL+ F + +
Sbjct: 549 QARAVAEFATE-YADGRPLVVAGDFNTEPG-----DPAFTALTDAGLVDAFAAVRPLPTS 602
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ +D+ + D +D S S H P+ + G
Sbjct: 603 PADDPRTQIDHIFVSPDL--------------PTTDPVAIASTASDHLPVAVTLKLPPG 647
>gi|87119222|ref|ZP_01075120.1| hypothetical protein MED121_13170 [Marinomonas sp. MED121]
gi|86165613|gb|EAQ66880.1| hypothetical protein MED121_13170 [Marinomonas sp. MED121]
Length = 449
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 6/124 (4%)
Query: 4 QQGEWLKKWAD-QKIKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q LK++ + ++I P ++AGDFN IN + DF ++
Sbjct: 318 EQLAQLKRFIESKQIPYQEPVIMAGDFNVDKINYPQEHLDFLALLNATEPEATGAYPYSY 377
Query: 62 TC----NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ LDY + D+ + + + LS H P+
Sbjct: 378 AGPVNIYADEAFNEYLDYVLYSNDHIAPYASENKMLTPRSIDSQHWQSWDLSDHYPVEGR 437
Query: 118 YDFE 121
+ F
Sbjct: 438 FAFP 441
>gi|158424436|ref|YP_001525728.1| exodeoxyribonuclease III [Azorhizobium caulinodans ORS 571]
gi|158331325|dbj|BAF88810.1| exodeoxyribonuclease III [Azorhizobium caulinodans ORS 571]
Length = 262
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 33/133 (24%), Gaps = 18/133 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFN----------------RKINSIGDTDDFWQKMDPD 49
LK + + ++K P ++AGDFN + F + ++
Sbjct: 128 MARLKAFTESRLKLEEPLILAGDFNVIPDARDAADPAAWVEDALYLPRTRAAFREIINLG 187
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSK 107
++ + L+ ++ +
Sbjct: 188 MTDALRATSDAERLFTFWDYQAGAWQRDFGIRIDHLLLSPQAADRLIGAGIDKHLRALER 247
Query: 108 LSTHCPLTIEYDF 120
S H P I+
Sbjct: 248 PSDHVPAWIDLKM 260
>gi|306842863|ref|ZP_07475501.1| exodeoxyribonuclease III (xth) [Brucella sp. BO2]
gi|306286985|gb|EFM58500.1| exodeoxyribonuclease III (xth) [Brucella sp. BO2]
Length = 252
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 29/137 (21%), Gaps = 24/137 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKM 46
E ++ + ++ GD N D +
Sbjct: 118 EEMRAIIADRKDECSSLLV-GDLNIAPLENDVWSHKQLLKIVSHTPIETETLEDLRIKGG 176
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--YDQSDLDTR 104
D + +++ R K D R +
Sbjct: 177 WSDLMRHLIAADQKIYTWWSYRAKDW-DAADRGRRLDHVWGSADLESHIKGLQVLRDARG 235
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ +D +
Sbjct: 236 WDRPSDHVPVIATFDLD 252
>gi|294651921|ref|ZP_06729210.1| exodeoxyribonuclease III [Acinetobacter haemolyticus ATCC 19194]
gi|292822153|gb|EFF81067.1| exodeoxyribonuclease III [Acinetobacter haemolyticus ATCC 19194]
Length = 294
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 37/140 (26%), Gaps = 27/140 (19%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------F 42
L + + LK+W D+ ++ GD+N I +
Sbjct: 163 LEEYAKILKQWRDE----NKSIIVCGDYNIVHKRIDIKNWSGNQKSSGVLPHERSWLDHI 218
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ ++ E E R ++ + + +
Sbjct: 219 YDELGYVDTFREVRPEAELYSWWSNRGQARAKNVGW--RIDYHACSPDWKARTANAWVYK 276
Query: 103 TRRSKLSTHCPLTIEYDFEK 122
+ S H P+ I+Y +
Sbjct: 277 EQWF--SDHAPVIIDYKIHE 294
>gi|111023203|ref|YP_706175.1| DNA-(apurinic or apyrimidinic site) lyase [Rhodococcus jostii RHA1]
gi|110822733|gb|ABG98017.1| probable DNA-(apurinic or apyrimidinic site) lyase [Rhodococcus
jostii RHA1]
Length = 268
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 38/135 (28%), Gaps = 21/135 (15%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------GLLIRFPQE 58
+L A + G V+ GD+N + + K + L F ++
Sbjct: 134 ARYLTATAAAAVAAGRHVVVCGDWNIAHTELDLKNWKTNKKNSGFLPNEREWLGALFAED 193
Query: 59 KES--------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
R K+ + D + + + +T
Sbjct: 194 AHWTDVVRQLNPDVAGPYSWWSYRGKAFDNDSGWRIDYQIATRELAERAKQAVVERAETY 253
Query: 105 RSKLSTHCPLTIEYD 119
+ S H P+T++Y
Sbjct: 254 DQRWSDHAPVTVQYR 268
>gi|110801105|ref|YP_695823.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
gi|110675752|gb|ABG84739.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
Length = 250
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 27/120 (22%), Gaps = 23/120 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
++ + V+ GD N I + + + F
Sbjct: 132 ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFSTLLSSGFIDTFRYFNP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + R + + D + I S HCP+ +
Sbjct: 192 DLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEILG----SDHCPVKL 247
>gi|86159101|ref|YP_465886.1| endonuclease/exonuclease/phosphatase [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775612|gb|ABC82449.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter dehalogenans
2CP-C]
Length = 282
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 15/121 (12%)
Query: 3 SQQGEWL-KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L + P V+ GDFN + + + + P
Sbjct: 155 RRQAAALLSADILRDAALSHPLVLVGDFNSPSDRSAVPRWLRRTLTDCAVAAGRPAATFP 214
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ +D + +V+ + R + S H PL +E +
Sbjct: 215 SAWP-------------LLRLDRAYVDAALRVVACEVVRTPRAR-RASDHLPLVVELELT 260
Query: 122 K 122
+
Sbjct: 261 E 261
>gi|294851237|ref|ZP_06791910.1| exodeoxyribonuclease III [Brucella sp. NVSL 07-0026]
gi|294819826|gb|EFG36825.1| exodeoxyribonuclease III [Brucella sp. NVSL 07-0026]
Length = 268
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 27/131 (20%), Gaps = 23/131 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKMDPDGLL 52
K G ++ GD N D + D +
Sbjct: 139 IIADRKDGCSSLLVGDLNIAPLENDVWSHKQLLKIVSHTPIETETLEDLRIKGGWSDLMR 198
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--YDQSDLDTRRSKLST 110
+++ R K D R + + S
Sbjct: 199 HLIAADQKIYTWWSYRAKDW-DAADRGRRLDHVWGSADLESHIKGLQVLRDARGWDRPSD 257
Query: 111 HCPLTIEYDFE 121
H P+ +D +
Sbjct: 258 HVPVIATFDLD 268
>gi|260170322|ref|ZP_05756734.1| hypothetical protein BacD2_00508 [Bacteroides sp. D2]
gi|315918686|ref|ZP_07914926.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313692561|gb|EFS29396.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 292
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 31/118 (26%), Gaps = 13/118 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
ML +Q KI G P GDFN + + D K
Sbjct: 183 MLLEQVR--------KIAKGKPTFCTGDFNATPDEEPIQLLLKDSLLLDSYECTLTPPKG 234
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIE 117
+ I + + ++SY D S H P+ +E
Sbjct: 235 ----PSGSFYAYDKTRNIAKRIDFIFVTPKIKVLSYHTIDDDIKYNKYSSDHFPVMVE 288
>gi|255530789|ref|YP_003091161.1| exodeoxyribonuclease III Xth [Pedobacter heparinus DSM 2366]
gi|255343773|gb|ACU03099.1| exodeoxyribonuclease III Xth [Pedobacter heparinus DSM 2366]
Length = 264
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 30/131 (22%), Gaps = 18/131 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
+ L K A + G+P + GD+N + W + G
Sbjct: 125 IKRLTKHAAKLNAFGLPVALVGDYNIIPTDLDTYKPEKYLENALFRPEARKLWTALLKQG 184
Query: 51 L---LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + + D+ + +
Sbjct: 185 WTDAFRKLYPKDRIYTFWDYLRNAYHRDAGLRLDHFLLNDKLVDRLDAAGVDKHVRGWDH 244
Query: 108 LSTHCPLTIEY 118
S H P+ +
Sbjct: 245 SSDHAPVWVVL 255
>gi|18310156|ref|NP_562090.1| exodeoxyribonuclease III [Clostridium perfringens str. 13]
gi|110802988|ref|YP_698514.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
gi|18144835|dbj|BAB80880.1| 3'-exo-deoxyribonuclease [Clostridium perfringens str. 13]
gi|110683489|gb|ABG86859.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
Length = 250
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 27/120 (22%), Gaps = 23/120 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
++ + V+ GD N I + + + F
Sbjct: 132 ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFSTLLSSGFIDTFRYFNP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + R + + D + I S HCP+ +
Sbjct: 192 DLEGIYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEILG----SDHCPVKL 247
>gi|325970995|ref|YP_004247186.1| exodeoxyribonuclease III Xth [Spirochaeta sp. Buddy]
gi|324026233|gb|ADY12992.1| exodeoxyribonuclease III Xth [Spirochaeta sp. Buddy]
Length = 250
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 32/132 (24%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + + + P +I GD N SI + +
Sbjct: 123 EAFRSYVCS-LASMKPVIICGDLNVAHQSIDLRHPKANERNAGYSIEERNQFTSLLDAGF 181
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+E R K+ + +L+ ++
Sbjct: 182 IDTFRYLYPNREGIYSWWSYRFKARENNAGW--RIDYWLVSEELRQSIL--DSTIDTETQ 237
Query: 108 LSTHCPLTIEYD 119
S H P+ + +
Sbjct: 238 GSDHAPVILYLN 249
>gi|122053846|gb|ABM65904.1| APEX1 [Ateles geoffroyi]
Length = 159
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 31 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 89
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ +S ++
Sbjct: 90 LADSFRHLYPNT-AYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 146
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 147 GSDHCPITLYLAL 159
>gi|291545257|emb|CBL18366.1| exodeoxyribonuclease III [Ruminococcus sp. 18P13]
Length = 256
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 32/127 (25%), Gaps = 24/127 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ L+++ + P + GD N I + + +
Sbjct: 124 DALRQYLLG-LDARKPVIYCGDLNVAHREIDLKNPKSNRRNAGFTDEERGRLSTLLDSGF 182
Query: 50 -GLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + F++ N + + Q L +
Sbjct: 183 TDTFRLLYPDTAGAYTWWSYMFHAREKNAGW--RIDYFIVSNRIAPL--VQDSLIYKDVL 238
Query: 108 LSTHCPL 114
S HCP+
Sbjct: 239 GSDHCPV 245
>gi|258542179|ref|YP_003187612.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-01]
gi|256633257|dbj|BAH99232.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-01]
gi|256636316|dbj|BAI02285.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-03]
gi|256639369|dbj|BAI05331.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-07]
gi|256642425|dbj|BAI08380.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-22]
gi|256645480|dbj|BAI11428.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-26]
gi|256648533|dbj|BAI14474.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-32]
gi|256651586|dbj|BAI17520.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654577|dbj|BAI20504.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-12]
Length = 270
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 35/136 (25%), Gaps = 22/136 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------DDFWQKM 46
E + +W + V+ GDFN + + Q
Sbjct: 136 VEEVTEWFQSR--PLNRTVLVGDFNIAPLEHDVWSHKQLLKIVSHTPPETERLNRWLQTG 193
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
D + P +++ RN+ D+ D ++
Sbjct: 194 FVDAMRHFVPADEKLYTWWSYRNRDWKKSNRGRRLDHVWMTPDLLPNLHGMTVVREARDW 253
Query: 106 SKLSTHCPLTIEYDFE 121
S H P+ +++
Sbjct: 254 ESPSDHVPVVVDFSLS 269
>gi|254511339|ref|ZP_05123406.1| exodeoxyribonuclease III [Rhodobacteraceae bacterium KLH11]
gi|221535050|gb|EEE38038.1| exodeoxyribonuclease III [Rhodobacteraceae bacterium KLH11]
Length = 262
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 28/132 (21%), Gaps = 24/132 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W + ++ GD N +
Sbjct: 133 MRDWF--HAEKPGKSILVGDLNIAPREDDVWSHKQLLKVVSHTPIEVEHLAETQDAGGWV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ + E + R D R + + S S K
Sbjct: 191 DITRQDIPEGQLYSWWSYR-ARDWDAADKGRRLDHVWATSDISNAGHSSRILRDARGWEK 249
Query: 108 LSTHCPLTIEYD 119
S H P+ +D
Sbjct: 250 PSDHAPVFATFD 261
>gi|332307725|ref|YP_004435576.1| Endonuclease I [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332175054|gb|AEE24308.1| Endonuclease I [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 1500
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 21/137 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + L + ++ P +I GD N Q L E+
Sbjct: 1304 RAAQALTTFLSEQFAE-TPKLIIGDLNAYALEEPILKILEQGY---TNLANKFGGDEAYS 1359
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-----------------QSDLDTRRS 106
LD+ + + + ++D + ++ D
Sbjct: 1360 YSFGGEFGYLDHALASAELVDKVVDTTEWHINADEPIVFDYNVEFKSEQQHIDYYAPDAY 1419
Query: 107 KLSTHCPLTIEYDFEKG 123
++S H P+ I E
Sbjct: 1420 RMSDHDPVVISLLLESE 1436
>gi|326573473|gb|EGE23441.1| catabolite repression control protein [Moraxella catarrhalis
101P30B1]
Length = 336
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/130 (9%), Positives = 31/130 (23%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDG 50
+ Q ++ GD+N I + + ++
Sbjct: 211 RHILKQWRDENKSLIVCGDYNIVHKRIDIKNWSGNQKASGCLPHERAWLDHIYDELGYVD 270
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ + R ++ + + + + S S
Sbjct: 271 TFRVVRKDADIYSWWSNRGQARAKNVGW--RIDYHACSPDWKKRTLNA--WVYKDSWFSD 326
Query: 111 HCPLTIEYDF 120
H P+ I+Y
Sbjct: 327 HAPVIIDYQL 336
>gi|237753149|ref|ZP_04583629.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
gi|229375416|gb|EEO25507.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
Length = 250
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 32/124 (25%), Gaps = 23/124 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+ +++ P ++ GD N I + + + F
Sbjct: 131 KNLESKKPVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEEREKMSALLDSGFTDTYRHFY 190
Query: 57 QE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
E + + K+ + D + S S HCP+
Sbjct: 191 PEKQGAYTWWSYMGKARANNTGWRIDYFLCSKILDSRLKSASIYPEILG----SDHCPVG 246
Query: 116 IEYD 119
IE D
Sbjct: 247 IEID 250
>gi|254282366|ref|ZP_04957334.1| exodeoxyribonuclease III [gamma proteobacterium NOR51-B]
gi|219678569|gb|EED34918.1| exodeoxyribonuclease III [gamma proteobacterium NOR51-B]
Length = 259
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 34/135 (25%), Gaps = 23/135 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKM 46
+ + F+I D+N I + + ++
Sbjct: 126 MDAFFDHLKALRRKRREFIICADWNICHREIDLKNWRANRKNSGFLPHERAWLDRVFDEL 185
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
R E + R ++ D + + S R
Sbjct: 186 GYVDSFRRVNPEPDQYTWWSNRGQAWAKNVGWRLDYMLVTPGLADAATSASI----YREE 241
Query: 107 KLSTHCPLTIEYDFE 121
+ S H PLT+++ +
Sbjct: 242 RFSDHAPLTLDFAID 256
>gi|323524445|ref|YP_004226598.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1001]
gi|323381447|gb|ADX53538.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1001]
Length = 259
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 31/142 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++ ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELAREREVIVCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + Q E R ++ + + +
Sbjct: 177 WLTKLFDEVGYVDVFRTLDQRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGIASTAKR 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
R K S H PLT++YD
Sbjct: 235 TEVF--RDIKFSDHAPLTVDYD 254
>gi|300362953|ref|ZP_07059123.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353003|gb|EFJ68881.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
Length = 268
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 38/136 (27%), Gaps = 23/136 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ + + + + P +I GD + I + F + ++
Sbjct: 137 AQTFRNYVTKLM-QYKPVIIGGDMSVAHEKIDLAEPDDNHRHAGFTGIERKEFSELLNAG 195
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ R + FL+ ++ +
Sbjct: 196 FIDTFRYFHPDEAKYTYWSYREDARAKNIGW--RLDYFLVSHNLEDKI--INTKILNNIM 251
Query: 108 LSTHCPLTIEYDFEKG 123
S HCP+ ++ D + G
Sbjct: 252 GSDHCPIELDLDIKTG 267
>gi|296129478|ref|YP_003636728.1| 5'-Nucleotidase domain protein [Cellulomonas flavigena DSM 20109]
gi|296021293|gb|ADG74529.1| 5'-Nucleotidase domain protein [Cellulomonas flavigena DSM 20109]
Length = 1652
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 34/135 (25%), Gaps = 18/135 (13%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L+ W + GDFN D D +
Sbjct: 690 RQATALRDWVPTVQGDVEAVALVGDFNAYTRE----DPLQVLYDAGYVDAVETLAPGQWS 745
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR--------------SKLS 109
SLD+ +++ + ++ ++S + S
Sbjct: 746 YSFSGLSGSLDHVLLNEAARARATGADVWEINAEESVALEYSRYNYHGSLFHADDPYRSS 805
Query: 110 THCPLTIEYDFEKGN 124
H P+ + + +
Sbjct: 806 DHDPVLVGLSAGESD 820
>gi|239995387|ref|ZP_04715911.1| extracellular ribonuclease/nuclease fusion protein [Alteromonas
macleodii ATCC 27126]
Length = 1097
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/141 (11%), Positives = 32/141 (22%), Gaps = 21/141 (14%)
Query: 2 LSQQGEW-LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
L Q L ++ GD N L+ +
Sbjct: 895 LRTQAALGLTALVQNSEGLSDRVIVMGDLNAYAKEDPILALEDAGYSN---LVNLFHGES 951
Query: 61 STCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDT 103
+ LD+ + + + + Y+ S
Sbjct: 952 AYSYSFGGEIGYLDHALSSSTLTEYVADATVWHINADEPRVFDYNVEYKSETQLSSYYGA 1011
Query: 104 RRSKLSTHCPLTIEYDFEKGN 124
+ S H P+ + DF + +
Sbjct: 1012 DAYRSSDHDPVIVVLDFPETS 1032
>gi|227826512|ref|YP_002828291.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.14.25]
gi|229583674|ref|YP_002842175.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.27]
gi|227458307|gb|ACP36993.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.14.25]
gi|228018723|gb|ACP54130.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.27]
Length = 247
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 26/119 (21%), Gaps = 20/119 (16%)
Query: 16 KIKTGIPFVIAGDFNRKINSIG----------------DTDDFWQKMDPDGLLIRFPQEK 59
K++ P ++ GDFN +I + +
Sbjct: 132 KLRKAKPVILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFSHFLSLGFIDTFRYLHPNV 191
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K+ ++ L + S H P+ +E
Sbjct: 192 RKYSWWSYMGKAREKNLG--LRLDYCIVSEELKDRIKMADILI--DIQGSDHAPIILEL 246
>gi|163844025|ref|YP_001628429.1| exodeoxyribonuclease III (xth) [Brucella suis ATCC 23445]
gi|163674748|gb|ABY38859.1| exodeoxyribonuclease III (xth) [Brucella suis ATCC 23445]
Length = 268
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 24/137 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKM 46
E ++ + K G ++ GD N + +
Sbjct: 134 EEMRAIIADR-KDGCSSLLVGDLNIAPLENDVWSHKQLLKIVSHTPIETETLENLRIKGG 192
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--YDQSDLDTR 104
D + +++ R K D R +
Sbjct: 193 WSDLMRHLIAADQKIYTWWSYRAKDW-DAADRGRRLDHVWGSADLESHIKGLQVLRDARG 251
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ +D +
Sbjct: 252 WDRPSDHVPVIATFDLD 268
>gi|121222076|gb|ABM47607.1| APEX1 [Saguinus labiatus]
Length = 158
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 30 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 88
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ +S ++
Sbjct: 89 LADSFRHLYPNT-AYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALC--DSKIRSKAL 145
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 146 GSDHCPITLYLAL 158
>gi|260459328|ref|ZP_05807583.1| exodeoxyribonuclease III [Mesorhizobium opportunistum WSM2075]
gi|259034882|gb|EEW36138.1| exodeoxyribonuclease III [Mesorhizobium opportunistum WSM2075]
Length = 281
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 29/136 (21%), Gaps = 21/136 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL-------------- 52
E L + I+ V+ GD+N I + +
Sbjct: 147 ERLIDYGRLLIRDSPASVLCGDYNVVPAPIDAAVP-ARWLSDAVYFPESRQAYAEMLAEG 205
Query: 53 -----IRFPQEKESTCNV-IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
E+ + D+ +
Sbjct: 206 WIDAVRLIQPERGVYTYWNFSYRGGYDRSSGLRMDHLLVSPSLRERLGGAGVDVAVRGWE 265
Query: 107 KLSTHCPLTIEYDFEK 122
K S H P IE D+ +
Sbjct: 266 KPSDHAPAWIELDWPR 281
>gi|323473589|gb|ADX84195.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus REY15A]
Length = 247
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 26/119 (21%), Gaps = 20/119 (16%)
Query: 16 KIKTGIPFVIAGDFNRKINSIG----------------DTDDFWQKMDPDGLLIRFPQEK 59
K++ P ++ GDFN +I + +
Sbjct: 132 KLRRAKPVILCGDFNIAHQNIDGAFSDPTIPGLTPQERSWFSHFLSLGFIDTFRYLHPNV 191
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K+ ++ L + S H P+ +E
Sbjct: 192 RKYSWWSYMGKAREKNLG--LRLDYCIVSEELKDRIKMADILI--DIQGSDHAPIILEL 246
>gi|15899057|ref|NP_343662.1| exodeoxyribonuclease [Sulfolobus solfataricus P2]
gi|284175276|ref|ZP_06389245.1| exodeoxyribonuclease [Sulfolobus solfataricus 98/2]
gi|13815592|gb|AAK42452.1| Exodeoxyribonuclease [Sulfolobus solfataricus P2]
gi|261600804|gb|ACX90407.1| exodeoxyribonuclease III Xth [Sulfolobus solfataricus 98/2]
Length = 247
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 24/119 (20%), Gaps = 20/119 (16%)
Query: 16 KIKTGIPFVIAGDFNRKINSIG----------------DTDDFWQKMDPDGLLIRFPQEK 59
K++ P ++ GDFN SI +
Sbjct: 132 KLREVKPVILCGDFNIAHQSIDAAFSDPKIPGLTPQERAWFTHLLSLGFIDTFRYLHPNV 191
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ ++ L + S H P+ +E
Sbjct: 192 RKYSWWSYMGNAREKNLG--LRLDYCIVSEELKDSIKMADILT--DVQGSDHAPIILEL 246
>gi|320529778|ref|ZP_08030856.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
gi|320138017|gb|EFW29921.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
Length = 250
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 31/132 (23%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + +++ P V+ GD N I + + +
Sbjct: 124 DAFRSFLLE-LRSKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFGELLAAGF 182
Query: 50 -GLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+K + + FL+
Sbjct: 183 VDTFRALYPDKVGAYTWWSYLRHARETNAGW--RIDYFLVSEELRGRIAAAEIHA--DVF 238
Query: 108 LSTHCPLTIEYD 119
S HCP+++
Sbjct: 239 GSDHCPVSLTLS 250
>gi|218189226|gb|EEC71653.1| hypothetical protein OsI_04096 [Oryza sativa Indica Group]
Length = 499
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 27/131 (20%), Gaps = 24/131 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + ++ P ++ GD N I D +
Sbjct: 374 LGNYMKD-LEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTIEERESFETNFLSKGFV 432
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R+ + FL+ S + S
Sbjct: 433 DTFRKQHPNVVGYSYWGYRHNARKTNKGW--RLDYFLVSESIAE--RVHDSYIIPDISAS 488
Query: 110 THCPLTIEYDF 120
H PL +
Sbjct: 489 DHSPLGLVLKL 499
>gi|86359550|ref|YP_471442.1| exodeoxyribonuclease III protein [Rhizobium etli CFN 42]
gi|86283652|gb|ABC92715.1| exodeoxyribonuclease III protein [Rhizobium etli CFN 42]
Length = 267
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 28/132 (21%), Gaps = 23/132 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDG 50
K + ++ GD N + D
Sbjct: 137 KLLKANGEANTSAILVGDLNIAPLEHDVWSHKQLLKIVSHTPVETDGLLEVMKRGAWLDL 196
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKL 108
+ P ++ R K R + + + +
Sbjct: 197 MRQHVPASEKLYTWWSYRAKDWQ-AADRGRRLDHIWSSSDLGPHLQRIEILKEARGWDRP 255
Query: 109 STHCPLTIEYDF 120
S H P+T +DF
Sbjct: 256 SDHVPVTAHFDF 267
>gi|115440515|ref|NP_001044537.1| Os01g0801000 [Oryza sativa Japonica Group]
gi|55296319|dbj|BAD68137.1| putative DNA-(apurinic or apyrimidinic site) lyase (ARP) [Oryza
sativa Japonica Group]
gi|55297696|dbj|BAD68286.1| putative DNA-(apurinic or apyrimidinic site) lyase (ARP) [Oryza
sativa Japonica Group]
gi|113534068|dbj|BAF06451.1| Os01g0801000 [Oryza sativa Japonica Group]
gi|215715310|dbj|BAG95061.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222619408|gb|EEE55540.1| hypothetical protein OsJ_03774 [Oryza sativa Japonica Group]
Length = 499
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 27/131 (20%), Gaps = 24/131 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------- 49
L + ++ P ++ GD N I D +
Sbjct: 374 LGNYMKD-LEKSKPVILTGDLNCAHQEIDIHDPAGNRRSAGFTIEERESFETNFLSKGFV 432
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R+ + FL+ S + S
Sbjct: 433 DTFRKQHPNVVGYSYWGYRHNARKTNKGW--RLDYFLVSESIAE--RVHDSYIIPDISAS 488
Query: 110 THCPLTIEYDF 120
H PL +
Sbjct: 489 DHSPLGLVLKL 499
>gi|290962564|ref|YP_003493746.1| endonuclease/exonuclease/phosphatase family protein [Streptomyces
scabiei 87.22]
gi|260652090|emb|CBG75222.1| putative endonuclease/exonuclease/phosphatase family protein
[Streptomyces scabiei 87.22]
Length = 295
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 13/103 (12%), Positives = 21/103 (20%), Gaps = 5/103 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
P V+ GDFN + + D + R
Sbjct: 197 DRSAPVVVTGDFNAAAHDNRVYELMLGNGLVDAWDAAASRSPAYGTYHGYRAL-----KP 251
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R L + + S H P+ +
Sbjct: 252 DGRRIDWILTSPGVTTHWAAMNTFSVDGLYPSDHLPVQVSLTL 294
>gi|217959722|ref|YP_002338274.1| putative secreted protein [Bacillus cereus AH187]
gi|229138913|ref|ZP_04267492.1| hypothetical protein bcere0013_20260 [Bacillus cereus BDRD-ST26]
gi|217065665|gb|ACJ79915.1| putative secreted protein [Bacillus cereus AH187]
gi|228644538|gb|EEL00791.1| hypothetical protein bcere0013_20260 [Bacillus cereus BDRD-ST26]
Length = 213
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 11/131 (8%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +Q + W + + ++ GDFN S+ + +
Sbjct: 85 IRQEQMNTVNNWIENRASDYE--LLCGDFNDDPFSMVHQYLIRKHWIDVAQFKEIEENMI 142
Query: 61 STCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSI--------VSYDQSDLDTRRSKLSTH 111
+ + R N + D ++ +I + + + S L++ S H
Sbjct: 143 AQPTLDYRKNPNLKDDVKQEKRYDWIMIQENAAFEFPTIENVSIFGDSALNSTGMFPSDH 202
Query: 112 CPLTIEYDFEK 122
+ ++ F +
Sbjct: 203 YGVFVDLKFNE 213
>gi|53802367|ref|YP_112853.1| exodeoxyribonuclease III [Methylococcus capsulatus str. Bath]
gi|53756128|gb|AAU90419.1| exodeoxyribonuclease III [Methylococcus capsulatus str. Bath]
Length = 257
Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 23/128 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLL 52
+ D ++G ++ GD+N I + +++
Sbjct: 132 FLDDCARSGRQYIFCGDWNIAHKPIDLKNWRSNQKNSGFLPEERAWLDRVFEEAGWVDAF 191
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E E R ++ ++ + + + + S H
Sbjct: 192 RAVNPEPEQYTWWSNRGQAWAKNVGW--RIDYQVVSPGLRELIRSAAIY--KEERFSDHA 247
Query: 113 PLTIEYDF 120
PL I+YD
Sbjct: 248 PLIIDYDL 255
>gi|313610961|gb|EFR85889.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes FSL F2-208]
Length = 273
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
I P +I GDFN + N+ + D + + + L
Sbjct: 170 AATIAKDSPVIILGDFNTQPNTPTYNYITEKYQDAQ---LISQKPAKGPTGSFHDFHP-L 225
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N F + +Y+ + S H P+T D++
Sbjct: 226 RPENELEKIDYIFVSNEFQVSTYETIVDEVEGFSASDHFPVTANLDWK 273
>gi|297242738|ref|ZP_06926676.1| exonuclease III [Gardnerella vaginalis AMD]
gi|296888949|gb|EFH27683.1| exonuclease III [Gardnerella vaginalis AMD]
Length = 288
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 42/132 (31%), Gaps = 20/132 (15%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------- 48
L + D G ++ GDFN S+ + +
Sbjct: 156 RLGELRDAAASGGNQAILCGDFNIAHTSLDIKNAKANEKSAGFLPEERAYIDRWINEYEF 215
Query: 49 -DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D + + + +R K+ + D + + + S + ++ ++
Sbjct: 216 VDVMRMLAGDIQGPYTWWSQRGKAFDNNVGWRLDYQFATPEIAESARGFVIDRAESYDAR 275
Query: 108 LSTHCPLTIEYD 119
S H PL+I+YD
Sbjct: 276 WSDHAPLSIKYD 287
>gi|229184417|ref|ZP_04311624.1| hypothetical protein bcere0004_19800 [Bacillus cereus BGSC 6E1]
gi|228599213|gb|EEK56826.1| hypothetical protein bcere0004_19800 [Bacillus cereus BGSC 6E1]
Length = 213
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 11/131 (8%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +Q + W + + ++ GDFN S+ + +
Sbjct: 85 IRQEQMNTVNNWIENRASDYE--LLCGDFNDDPFSMVHQYLIRKHWIDVAQFKEIEENMI 142
Query: 61 STCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSI--------VSYDQSDLDTRRSKLSTH 111
+ + R N + D ++ +I + + + +S L + S H
Sbjct: 143 AQPTLDYRKNPNLKDDVKQEKRYDWIMIQENAAFEFPTIENVSIFGESALTSTGMFPSDH 202
Query: 112 CPLTIEYDFEK 122
+ ++ F +
Sbjct: 203 YGVFVDLKFNE 213
>gi|56552297|ref|YP_163136.1| exodeoxyribonuclease III Xth [Zymomonas mobilis subsp. mobilis ZM4]
gi|56543871|gb|AAV90025.1| exodeoxyribonuclease III Xth [Zymomonas mobilis subsp. mobilis ZM4]
Length = 261
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 20/133 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSI-----------------GDTDDFWQKMDPD 49
+ A + P ++AGD+N + ++ +W+++
Sbjct: 126 KAFLAHARSLWQQEKPVILAGDYNVVPSFDIKDIRNAAALADNALLAPESLFYWRQLLAM 185
Query: 50 GLL---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
G + + +S + D+ D + + +
Sbjct: 186 GWTDSLRVRHPSEPLYSFWDYQAQSWPRDDGMRIDHILLTPDLADGLTDSGVDRQMRGQE 245
Query: 107 KLSTHCPLTIEYD 119
K S H P+ IE D
Sbjct: 246 KASDHAPVWIEID 258
>gi|296113045|ref|YP_003626983.1| catabolite repression control protein [Moraxella catarrhalis RH4]
gi|295920739|gb|ADG61090.1| catabolite repression control protein [Moraxella catarrhalis RH4]
Length = 336
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 12/130 (9%), Positives = 31/130 (23%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDG 50
+ Q ++ GD+N I + + ++
Sbjct: 211 RHILKQWRDENKSLIVCGDYNIVHKRIDIKNWSGNQKASGCLPHERAWLDHIYDELGYVD 270
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ + R ++ + + + + S S
Sbjct: 271 TFRVVRKDADIYSWWSNRGQARAKNVGW--RIDYHACSPDWKKRTLNA--WVYKDSWFSD 326
Query: 111 HCPLTIEYDF 120
H P+ I+Y
Sbjct: 327 HAPVIIDYQL 336
>gi|168214660|ref|ZP_02640285.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|170713849|gb|EDT26031.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
Length = 250
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 27/120 (22%), Gaps = 23/120 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
++ + V+ GD N I + + + F
Sbjct: 132 ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFSTLLSSGFIDTFRYFNP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + R + + D + I S HCP+ +
Sbjct: 192 DLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEILG----SDHCPVKL 247
>gi|126733854|ref|ZP_01749601.1| exodeoxyribonuclease III, putative [Roseobacter sp. CCS2]
gi|126716720|gb|EBA13584.1| exodeoxyribonuclease III, putative [Roseobacter sp. CCS2]
Length = 262
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 25/126 (19%), Gaps = 22/126 (17%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGLL----IRFP 56
+ ++ GD N D + + G
Sbjct: 138 HAQKPTKSILVGDLNIAPREDDVWDHKKLLKVVSHTPVEVAHFADVMDAGAWSDVTRNDI 197
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLSTHCPL 114
+ + R K D R + S K S H P+
Sbjct: 198 TDGKLYSWWSYRAKDW-DAADKGRRLDHIWATPDIKNAAHSSRVLRDARGWEKPSDHAPV 256
Query: 115 TIEYDF 120
+D
Sbjct: 257 FATFDL 262
>gi|78355598|ref|YP_387047.1| exodeoxyribonuclease III [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78218003|gb|ABB37352.1| exodeoxyribonuclease III [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 336
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 29/126 (23%), Gaps = 23/126 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRF 55
Q ++ P V+ GDFN + +
Sbjct: 215 AQTLRRKKPIVVCGDFNTAHRPVDLARPRENEGTSGFLPVERAWMDKFIDHGYVDTFRLV 274
Query: 56 PQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ ++ R K+ F + + + S HCP+
Sbjct: 275 HPDAQAMYSWWSYRFKARDRNVGW--RIDYFFVSDELR--HAVKDATIEMEVFGSDHCPV 330
Query: 115 TIEYDF 120
+E
Sbjct: 331 GLELAL 336
>gi|85711283|ref|ZP_01042342.1| Extracellular nuclease [Idiomarina baltica OS145]
gi|85694784|gb|EAQ32723.1| Extracellular nuclease [Idiomarina baltica OS145]
Length = 577
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 33/125 (26%), Gaps = 18/125 (14%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
L +W Q V+ GDFN
Sbjct: 462 SAAALIEWVKQNAFPAP--VLLGDFNAYYKEDPVQYIANHGFSNVSRADE-------YSY 512
Query: 65 VIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSY-DQSDLDTRRSKLSTHCPLT 115
V +LD+ ID+ + ++ SY D + S H P+
Sbjct: 513 VFDSQAGALDHVFIDQGLTDSVKNVQHIHYNSDEPTVFSYQDTEYFKVGPYRSSDHDPVF 572
Query: 116 IEYDF 120
I+ +F
Sbjct: 573 IDVEF 577
>gi|312130846|ref|YP_003998186.1| endonuclease/exonuclease/phosphatase [Leadbetterella byssophila DSM
17132]
gi|311907392|gb|ADQ17833.1| Endonuclease/exonuclease/phosphatase [Leadbetterella byssophila DSM
17132]
Length = 600
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 39/139 (28%), Gaps = 26/139 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ E LK W + +++ GDFN + D S
Sbjct: 468 QQAEDLKNWLATRPTGTDDPDYILMGDFNSYAMEDPL-------IYLDEQGYHPLFPATS 520
Query: 62 TCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDLDTR 104
V SLD+ + K + + ++ Y+ +S D
Sbjct: 521 YSYVYDGFWGSLDHALATPTMKSQVKKAVKWHINSDEAPVLDYNMEYKSAEQIKSYYDAS 580
Query: 105 RSKLSTHCPLTIEYDFEKG 123
+ S H P+ I
Sbjct: 581 PFRSSDHDPIIIRLKLSTA 599
>gi|172041403|ref|YP_001801117.1| exodeoxyribonuclease III [Corynebacterium urealyticum DSM 7109]
gi|171852707|emb|CAQ05683.1| exodeoxyribonuclease III [Corynebacterium urealyticum DSM 7109]
Length = 271
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 34/129 (26%), Gaps = 20/129 (15%)
Query: 7 EWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFW---------------QKMDPD 49
+ L +A + G V+ GDFN D W ++
Sbjct: 144 DALASYAKTTGEDGTAEKLVLTGDFNIAPRDEDVWDRSWFEGKTHVTPNERKRLTALEDA 203
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
GL + + I D + S + + + S
Sbjct: 204 GLTQATELIADQYTYWDYQAMRFQKNEGIRIDLQYAR---GLSPEAGRVDRDERKGKGAS 260
Query: 110 THCPLTIEY 118
H P+ I+Y
Sbjct: 261 DHAPVIIDY 269
>gi|302530966|ref|ZP_07283308.1| large secreted protein [Streptomyces sp. AA4]
gi|302439861|gb|EFL11677.1| large secreted protein [Streptomyces sp. AA4]
Length = 696
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 36/125 (28%), Gaps = 14/125 (11%)
Query: 3 SQQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q L+ + Q + V+AGD N S + D + P E+
Sbjct: 562 QKQATVLQGFVAQLLGADPRANVVVAGDLNDYQFSPALAKLTSGGLLKDLISTLPPAERY 621
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYD 119
S + + L + V YD + S H P + +
Sbjct: 622 SYVY-----------EGQSQVLDHILASGAPRGVDYDVVHVNAEFADQASDHDPQVVRFR 670
Query: 120 FEKGN 124
GN
Sbjct: 671 PSAGN 675
>gi|283456347|ref|YP_003360911.1| exodeoxyribonuclease III [Bifidobacterium dentium Bd1]
gi|283102981|gb|ADB10087.1| xth Exodeoxyribonuclease III [Bifidobacterium dentium Bd1]
Length = 277
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 20/133 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------ 48
E + + D+ G V+ GDFN + + +
Sbjct: 144 ERMGQLRDEAAHGGRQSVLCGDFNIAHTPLDIKNAKANETHAGFLPEERAYVDKWLGELE 203
Query: 49 --DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
D + + +R ++ + D + + + S + T
Sbjct: 204 FVDVMRNLAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAESACGFVIDKAPTYDK 263
Query: 107 KLSTHCPLTIEYD 119
+ S H PLTI YD
Sbjct: 264 RWSDHAPLTITYD 276
>gi|118477610|ref|YP_894761.1| hypothetical protein BALH_1938 [Bacillus thuringiensis str. Al
Hakam]
gi|118416835|gb|ABK85254.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
Length = 264
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 11/131 (8%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +Q + W + + ++ GDFN S+ + +
Sbjct: 136 IRQEQMNTVNNWIENRASDYE--LLCGDFNDDPFSMVHQYLIRKHWIDVAQFKEIEENMI 193
Query: 61 STCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSI--------VSYDQSDLDTRRSKLSTH 111
+ + R N + D ++ +I + + + +S L + S H
Sbjct: 194 AQPTLDYRKNPNLKDDVKQEKRYDWIMIQENAAFEFPTIENVSIFGESALTSTGMFPSDH 253
Query: 112 CPLTIEYDFEK 122
+ ++ F +
Sbjct: 254 YGVFVDLKFNE 264
>gi|301052723|ref|YP_003790934.1| endonuclease/exonuclease/phosphatase [Bacillus anthracis CI]
gi|300374892|gb|ADK03796.1| endonuclease/exonuclease/phosphatase [Bacillus cereus biovar
anthracis str. CI]
Length = 788
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTNL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + +++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NTNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|258645453|ref|ZP_05732922.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
gi|260402804|gb|EEW96351.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
Length = 254
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 30/122 (24%), Gaps = 23/122 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
+ P ++ GD N I + M+ Q+
Sbjct: 136 LSKKKPVILCGDLNVAHEEIDLANPASNHMNAGFTDDERNKMTELLSDGFTDSFRYLHQD 195
Query: 59 KE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
K+ + KS D I + + S HCP+ ++
Sbjct: 196 KKDAYSWWSYFAKSRERNIGWRIDYFLVSDILQPRIKAAEIHSSILG----SDHCPVELD 251
Query: 118 YD 119
+
Sbjct: 252 IE 253
>gi|228913758|ref|ZP_04077383.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228845697|gb|EEM90723.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 190
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 75 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTNL---KNMLNTVPKENR 131
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + +++ ++S H P+ + D +
Sbjct: 132 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NTNIMKEHGRVSDHDPVLAQIDLK 187
Query: 122 KGN 124
K +
Sbjct: 188 KAS 190
>gi|229020312|ref|ZP_04177079.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1273]
gi|229026537|ref|ZP_04182888.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1272]
gi|228734763|gb|EEL85406.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1272]
gi|228740984|gb|EEL91215.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1273]
Length = 353
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 51/130 (39%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E+LK++ ++ + G ++ GD+N+ +++ +D + K P+ L+ +
Sbjct: 227 IRKQQAEYLKEYMNKCYQNGDYVILGGDWNQLLSNAQLSDPKFVKERPEWLVELPKDFAD 286
Query: 61 STCNV---------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
K ++ F++ + IV+ DL S H
Sbjct: 287 GGFQWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKDLKFEN---SDH 343
Query: 112 CPLTIEYDFE 121
P++ + +
Sbjct: 344 NPVSAVFKLK 353
>gi|196044355|ref|ZP_03111591.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus
03BB108]
gi|196024994|gb|EDX63665.1| endonuclease/exonuclease/phosphatase family [Bacillus cereus
03BB108]
Length = 788
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKALEGTNL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + + + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPYTSVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|118476676|ref|YP_893827.1| endonuclease/exonuclease/phosphatase [Bacillus thuringiensis str.
Al Hakam]
gi|118415901|gb|ABK84320.1| endonuclease/exonuclease/phosphatase [Bacillus thuringiensis str.
Al Hakam]
Length = 788
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKALEGTNL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + + + + S++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPYTSVDPVHL----NSNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|49479799|ref|YP_035327.1| endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|49331355|gb|AAT62001.1| endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar konkukian str. 97-27]
Length = 788
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTNL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + +++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NTNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|217965584|ref|YP_002351262.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes HCC23]
gi|217334854|gb|ACK40648.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes HCC23]
gi|307569865|emb|CAR83044.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes L99]
Length = 256
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
I P ++ GDFN + N+ + D + + + L
Sbjct: 153 AAIIAENSPVIVLGDFNTQPNTPTYNYITEKYQDAQ---LISQKPAKGPTGCFHDFHP-L 208
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N F + +Y+ + S H P+T D++
Sbjct: 209 RPENELEKIDYIFVSNEFQVNTYETIVDEVDGFSASDHFPVTANLDWK 256
>gi|149521136|ref|XP_001516262.1| PREDICTED: similar to APEX nuclease (multifunctional DNA repair
enzyme) 1 [Ornithorhynchus anatinus]
Length = 324
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 30/133 (22%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
+ +++ + P V+ GD N I + +D
Sbjct: 196 QAFRRFLQAQAAR-KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLGTVD 254
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ + +
Sbjct: 255 LADSFRHLYPA-AAYAYTFWTYMMNARSKNVGWRLDYFLLSRALLPSLC--DSKIRSAAL 311
Query: 108 LSTHCPLTIEYDF 120
S HCP+T+
Sbjct: 312 GSDHCPITLYLAL 324
>gi|225159347|ref|ZP_03725644.1| DNA-(apurinic or apyrimidinic site) lyase [Opitutaceae bacterium
TAV2]
gi|224802053|gb|EEG20328.1| DNA-(apurinic or apyrimidinic site) lyase [Opitutaceae bacterium
TAV2]
Length = 259
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 30/135 (22%), Gaps = 25/135 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF------------------W 43
+Q W + + ++T P V+ GD N I +
Sbjct: 129 RQ-RWDADFLAYLRGLETRKPVVMCGDLNVAHEEIDLARPKENVGNPGFSNEERAGFREF 187
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ F + R + D +
Sbjct: 188 LRAGFLDTFREFEKGPGHYSWWSYRAGARGKNVGWRIDYFLASASLRPRLKRAWI----E 243
Query: 104 RRSKLSTHCPLTIEY 118
S HCP+ +E
Sbjct: 244 PAVMGSDHCPIGLEL 258
>gi|157825475|ref|YP_001493195.1| exodeoxyribonuclease III [Rickettsia akari str. Hartford]
gi|157799433|gb|ABV74687.1| exodeoxyribonuclease III [Rickettsia akari str. Hartford]
Length = 277
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/136 (10%), Positives = 30/136 (22%), Gaps = 23/136 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKM 46
+++W +I GD N + + +
Sbjct: 126 VRLMQEWLTTNRTRNDKIIIVGDLNIAPHEHDVWSSKQLRNVISHTDIERSLLVELQNSL 185
Query: 47 DPDGLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDT 103
F +++ RN R + + N+ +
Sbjct: 186 SFIDSSRYFVPLDEKFYTWWSYRNIDWKK-SNRGRRLDHIWVSNNLKDALFSMHLLSEAR 244
Query: 104 RRSKLSTHCPLTIEYD 119
+ S H P + D
Sbjct: 245 DWLQPSDHVPYFVTLD 260
>gi|218283512|ref|ZP_03489502.1| hypothetical protein EUBIFOR_02092 [Eubacterium biforme DSM 3989]
gi|218215780|gb|EEC89318.1| hypothetical protein EUBIFOR_02092 [Eubacterium biforme DSM 3989]
Length = 249
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 22/131 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD- 49
EW + + + P + GDFN N I D F + + +
Sbjct: 122 EWDEAFGNYLKSLDKPVMACGDFNVANNEIDVPYPDMIRGTAGFSDEERDSFKENLLSNL 181
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
E R ++ + + +L+ N
Sbjct: 182 VDTYRVLNPETIQYSWWSYRGQARENNIGM--RLDYWLVSNDLKDKI--VDSKILDDIYG 237
Query: 109 STHCPLTIEYD 119
S HCP+ ++ +
Sbjct: 238 SDHCPIMLDIN 248
>gi|254251096|ref|ZP_04944414.1| Exonuclease III [Burkholderia dolosa AUO158]
gi|124893705|gb|EAY67585.1| Exonuclease III [Burkholderia dolosa AUO158]
Length = 257
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 41/144 (28%), Gaps = 31/144 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++K ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELKKKREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + + E R ++ + + +
Sbjct: 177 WLTKLFDDVGYVDVFRTLDPRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAATAKS 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFE 121
S + K S H PLT++YD+
Sbjct: 235 TSIF--KDIKFSDHAPLTVDYDYS 256
>gi|109896633|ref|YP_659888.1| endonuclease/exonuclease/phosphatase [Pseudoalteromonas atlantica
T6c]
gi|109698914|gb|ABG38834.1| Endonuclease/exonuclease/phosphatase [Pseudoalteromonas atlantica
T6c]
Length = 331
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L+QQ L++W G+P+++ GDFN ++ S + ++ D I +
Sbjct: 222 LAQQVPVLEEWLAAHQTLGVPYMVLGDFNHRLASE--NNYLASRLTSDEYGIDIATQALR 279
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
C R +D+ + ++ LI S + Y D + LS HC +++
Sbjct: 280 GC--HPRYPEPIDHIL-LGGMQSTLIAASAHVHRYKNMDEEA---MLSDHCAVSL 328
>gi|303232423|ref|ZP_07319115.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302481507|gb|EFL44575.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 259
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 26/123 (21%), Gaps = 23/123 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEKES 61
+ P + GDFN I + + K+ G F +
Sbjct: 141 LDAKKPVITCGDFNCAHEEIDLKNPATNHQNAGFSDEERASFTKLLNTGFTDTFRAAHPT 200
Query: 62 ----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
R +S D + S HCP+ +
Sbjct: 201 LTDAYSWWSYRMRSRERNAGWRIDYFLVSDRIKNQVSDARIH----ADVYGSDHCPVGLT 256
Query: 118 YDF 120
Sbjct: 257 ITL 259
>gi|15604130|ref|NP_220645.1| exodeoxyribonuclease III (xthA1) [Rickettsia prowazekii str. Madrid
E]
gi|3860822|emb|CAA14722.1| EXODEOXYRIBONUCLEASE III (xthA1) [Rickettsia prowazekii]
gi|292571858|gb|ADE29773.1| Exodeoxyribonuclease III [Rickettsia prowazekii Rp22]
Length = 261
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 31/137 (22%), Gaps = 23/137 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKM 46
+++W +I GD N + + +
Sbjct: 126 VRLMREWFTANRTKNDKIIIVGDLNIAPHEHDVWSSKQMQNVISHTDIERSLLIELQNSL 185
Query: 47 DPDGLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDT 103
F K+ RN R + + ++ +
Sbjct: 186 GFIDSSRYFISLNKKCYTWWSYRNVDWKK-SNRGRRLDHIWVSDNLKYALFSMHLLSEAR 244
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P + ++F
Sbjct: 245 DWFRPSDHVPYLVTFNF 261
>gi|260574458|ref|ZP_05842462.1| exodeoxyribonuclease III Xth [Rhodobacter sp. SW2]
gi|259023354|gb|EEW26646.1| exodeoxyribonuclease III Xth [Rhodobacter sp. SW2]
Length = 262
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 27/132 (20%), Gaps = 22/132 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W + + ++ GD N +
Sbjct: 133 MRDWC--RWEKPDRAILVGDLNIAPREDDVWSHKALLKIVSHTPIEVDHLTAVMEAGSWV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSS-LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ E R D+ D + + S +
Sbjct: 191 DVTRADIPEGPLYSWWSYRAAEWGAADKGRRLDHIWATPDIASAAHSSRILRAARGWQQP 250
Query: 109 STHCPLTIEYDF 120
S H P+ +D
Sbjct: 251 SDHAPVFATFDL 262
>gi|225026087|ref|ZP_03715279.1| hypothetical protein EUBHAL_00328 [Eubacterium hallii DSM 3353]
gi|224956574|gb|EEG37783.1| hypothetical protein EUBHAL_00328 [Eubacterium hallii DSM 3353]
Length = 250
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 35/127 (27%), Gaps = 24/127 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+++ Q++ P ++ GD N I + K +
Sbjct: 127 REYL-QELDKEKPVIMTGDLNVAHEEIDLKNPKTNKKNAGFTQEERNKFTELLGAGFVDS 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
E + R K+ F++ + + + + S
Sbjct: 186 FRYLNPELAGAYTWWSYRFKAREKDAGW--RIDYFVVSERWKEKI--EDAIIYKTVMGSD 241
Query: 111 HCPLTIE 117
HCP+ ++
Sbjct: 242 HCPIGLQ 248
>gi|196046040|ref|ZP_03113268.1| putative secreted protein [Bacillus cereus 03BB108]
gi|196023095|gb|EDX61774.1| putative secreted protein [Bacillus cereus 03BB108]
Length = 264
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 11/131 (8%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +Q + W + + ++ GDFN S+ + +
Sbjct: 136 IRQEQMNTVNNWIENRASDYE--LLCGDFNDDPFSMVHQYLIRKHWIDVAQFKEIEENMI 193
Query: 61 STCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSI--------VSYDQSDLDTRRSKLSTH 111
+ + R N + D ++ +I + + + +S L + S H
Sbjct: 194 AQPTLDYRKNPNLKDDVKQEKRYDWIMIQENAAFEFPTIENVSIFGESALTSTGMFPSDH 253
Query: 112 CPLTIEYDFEK 122
+ ++ F +
Sbjct: 254 YGVFVDLKFNE 264
>gi|148927710|ref|ZP_01811154.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp.
GTL1]
gi|147886940|gb|EDK72466.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp.
GTL1]
Length = 266
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 27/130 (20%), Gaps = 24/130 (18%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLL 52
+ Q ++ P + GD N +QK G +
Sbjct: 140 AFLAYVKQ-LEKTKPVIFCGDLNVAHTEDDLARPDTNHGEHGFTDEEREGFQKFLDAGFV 198
Query: 53 IRFPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F + D + S
Sbjct: 199 DTFRMFTPKGNGHYTWWTHWANARARNVGWRIDYFLVSHALKSKVKSAKIH----ADVMG 254
Query: 109 STHCPLTIEY 118
S HCP++IE
Sbjct: 255 SDHCPISIEL 264
>gi|89902688|ref|YP_525159.1| exodeoxyribonuclease III [Rhodoferax ferrireducens T118]
gi|89347425|gb|ABD71628.1| exodeoxyribonuclease III [Rhodoferax ferrireducens T118]
Length = 263
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 48/145 (33%), Gaps = 33/145 (22%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDDFWQK----------- 45
QQ ++ ++ ++ ++K G F++ GD N I + +
Sbjct: 123 RQQAKF--RFLEEFYLHLAQLKNGREFILCGDVNIAHQEIDLKNWKGNRKNSGFLPEERA 180
Query: 46 ----------MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS 95
+ ++ E+ R ++ L + + ++
Sbjct: 181 WMTKLLTEAGLVDVYRQLQPTATDEAYTWWSNRGQAYAKNVGW--RLDYHLATPAMAALA 238
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYDF 120
++ + K S H PLTIEYD+
Sbjct: 239 RSETIY--KAEKFSDHAPLTIEYDW 261
>gi|206975161|ref|ZP_03236075.1| putative secreted protein [Bacillus cereus H3081.97]
gi|206746582|gb|EDZ57975.1| putative secreted protein [Bacillus cereus H3081.97]
Length = 264
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 11/131 (8%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +Q + W + + ++ GDFN S+ + +
Sbjct: 136 IRQEQMNTVNNWIENRASDYE--LLCGDFNDDPFSMVHQYLIRKHWIDVAQFKEIEENMI 193
Query: 61 STCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSI--------VSYDQSDLDTRRSKLSTH 111
+ + R N + D ++ +I + + + S L++ S H
Sbjct: 194 AQPTLDYRKNPNLKDDVKQEKRYDWIMIQENAAFEFPTIENVSIFGDSALNSTGMFPSDH 253
Query: 112 CPLTIEYDFEK 122
+ ++ F +
Sbjct: 254 YGVFVDLKFNE 264
>gi|50422749|ref|XP_459951.1| DEHA2E14872p [Debaryomyces hansenii CBS767]
gi|49655619|emb|CAG88197.1| DEHA2E14872p [Debaryomyces hansenii]
Length = 301
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 39/117 (33%), Gaps = 3/117 (2%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + W Q++ P ++GDFN + + + + +
Sbjct: 183 QKSADLIAGWI-QQMPNNYPTFLSGDFNSISSDVAYQT-LQKSLKDSNTAAYQHINGNLS 240
Query: 63 CNV-IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++N + I +++ + Y+ D S+ S H P+ + +
Sbjct: 241 TYTGFEKNDNQSIIDFIWSPLNTNQENSNTYALEYEVLDNMYNGSRFSDHRPVNVHF 297
>gi|317498993|ref|ZP_07957275.1| endonuclease/Exonuclease/phosphatase [Lachnospiraceae bacterium
5_1_63FAA]
gi|316893742|gb|EFV15942.1| endonuclease/Exonuclease/phosphatase [Lachnospiraceae bacterium
5_1_63FAA]
Length = 371
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 15/137 (10%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ Q L ++ + G + GDFN + + D D ++ E
Sbjct: 230 IRKGQIRMLSADMKKEYEAGNYVLCGGDFNHDLKAAEDDDSTDRESWAYPFPRNMLPEHF 289
Query: 61 STCN---------VIKRNKSSLDYFV---IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
S C + + Y F+I ++ Y +
Sbjct: 290 SFCMDQLPKKENLWNSSRNADMKYIPGKTYTVTLDGFIISDNVKCDMYKNINT---GYSY 346
Query: 109 STHCPLTIEYDFEKGNV 125
S H P+ ++++ K +V
Sbjct: 347 SDHDPVYVKFELNKESV 363
>gi|291558619|emb|CBL37419.1| Endonuclease/Exonuclease/phosphatase family [butyrate-producing
bacterium SSC/2]
Length = 371
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 15/137 (10%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ Q L ++ + G + GDFN + + D D ++ E
Sbjct: 230 IRKGQIRMLSADMKKEYEAGNYVLCGGDFNHDLKAAEDDDSTDRESWAYPFPRNMLPEHF 289
Query: 61 STCN---------VIKRNKSSLDYFV---IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
S C + + Y F+I ++ Y +
Sbjct: 290 SFCMDQLPKKENLWNSSRNADMKYIPGKTYTVTLDGFIISDNVKCDMYKNINT---GYSY 346
Query: 109 STHCPLTIEYDFEKGNV 125
S H P+ ++++ K +V
Sbjct: 347 SDHDPVYVKFELNKESV 363
>gi|297583616|ref|YP_003699396.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
gi|297142073|gb|ADH98830.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
Length = 254
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 34/134 (25%), Gaps = 24/134 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
+ + Q+++ P ++ GD N I + +
Sbjct: 125 DAFYAYL-QELENEKPVIVCGDMNVAHEEIDLRNAKSNRGNSGFTTEERAKMTRLQSEWL 183
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D +P ++ + FL+ + S
Sbjct: 184 IDSYRYYYPDQEGAYTWWSYMKTVRERNIGW--RIDYFLVSDKLK--SAMNDVSIYSDVL 239
Query: 108 LSTHCPLTIEYDFE 121
S HCP+ + FE
Sbjct: 240 GSDHCPIGLTMAFE 253
>gi|116630243|ref|YP_815415.1| exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|116095825|gb|ABJ60977.1| Exonuclease III [Lactobacillus gasseri ATCC 33323]
Length = 268
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 38/134 (28%), Gaps = 23/134 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ + + + + P +I GD + + I + F + ++
Sbjct: 137 AQTFRNYVTKLM-QYKPVIIGGDMSVAHDKIDLAEPDDNHRHAGFTGIERKEFSELLNAG 195
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ R + D + +++ +
Sbjct: 196 FIDTFRYFHPDEAKYTYWSYREDARAKNIGWRLDYFLVSNNLEDKMINAQILNNIMG--- 252
Query: 108 LSTHCPLTIEYDFE 121
S HCP+ ++ D E
Sbjct: 253 -SDHCPIELDLDIE 265
>gi|328870805|gb|EGG19178.1| transcription factor IIIC-gamma subunit [Dictyostelium
fasciculatum]
Length = 1238
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 31/121 (25%), Gaps = 20/121 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIRFPQEK- 59
+ T P V GD N I + F ++ +
Sbjct: 255 LNTKKPVVWCGDLNVAHTEIDLANPKSNSRTAGFTIEERTSFSGHLNSGFIDTHRHFNPG 314
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL-TIEY 118
++ F++ +F + + + S HCP+ I+
Sbjct: 315 KTGTYTFWSYMGGARAKNAGWRLDYFIVPATFIGSIA--ASFIRSKVQGSDHCPIGIIDL 372
Query: 119 D 119
+
Sbjct: 373 E 373
>gi|88813076|ref|ZP_01128318.1| exodeoxyribonuclease III [Nitrococcus mobilis Nb-231]
gi|88789709|gb|EAR20834.1| exodeoxyribonuclease III [Nitrococcus mobilis Nb-231]
Length = 267
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 34/135 (25%), Gaps = 23/135 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKM 46
E L + G ++I GD+N I + + +
Sbjct: 133 MEPLLDHLKSLCEAGREYIICGDWNIAHKPIDLKNWRSNQKNSGFLPEERAWLDRLFDEA 192
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
E E R ++ + +I
Sbjct: 193 GFVDAFRLVNLEAEQYTWWSFRGQAWDNNTGW--RIDYHMITPGLRERVRGAEIYT--AE 248
Query: 107 KLSTHCPLTIEYDFE 121
+ S H PLT+ YD+E
Sbjct: 249 RFSDHAPLTLAYDWE 263
>gi|291519655|emb|CBK74876.1| exodeoxyribonuclease III [Butyrivibrio fibrisolvens 16/4]
Length = 250
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 32/129 (24%), Gaps = 24/129 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDGL 51
+ + QK+ ++ GD N I + +
Sbjct: 127 RAYL-QKLNEKKGVILCGDLNVAHEEIDIKNPKTNRHNAGFTDEERAKMTELLSAGFVDS 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + R K+ F++ + S
Sbjct: 186 FRYFYPDQTDIYSWWSYRFKAREKNAGW--RIDYFIVSEDIK--DRMKDSKIHTDVMGSD 241
Query: 111 HCPLTIEYD 119
HCP+ ++++
Sbjct: 242 HCPIELDFE 250
>gi|311110171|ref|ZP_07711568.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
gi|311065325|gb|EFQ45665.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
Length = 265
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 38/134 (28%), Gaps = 23/134 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ + + + + P +I GD + + I + F + ++
Sbjct: 134 AQTFRNYVTKLM-QYKPVIIGGDMSVAHDKIDLAEPDDNHRHAGFTGIERKEFSELLNAG 192
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ R + D + +++ +
Sbjct: 193 FIDTFRYFHPDEAKYTYWSYREDARAKNIGWRLDYFLVSNNLEDKMINAQILNNIMG--- 249
Query: 108 LSTHCPLTIEYDFE 121
S HCP+ ++ D E
Sbjct: 250 -SDHCPIELDLDIE 262
>gi|254718052|ref|ZP_05179863.1| exodeoxyribonuclease III [Brucella sp. 83/13]
gi|265982999|ref|ZP_06095734.1| exodeoxyribonuclease III Xth [Brucella sp. 83/13]
gi|306837613|ref|ZP_07470484.1| exodeoxyribonuclease III (xth) [Brucella sp. NF 2653]
gi|264661591|gb|EEZ31852.1| exodeoxyribonuclease III Xth [Brucella sp. 83/13]
gi|306407320|gb|EFM63528.1| exodeoxyribonuclease III (xth) [Brucella sp. NF 2653]
Length = 268
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 31/137 (22%), Gaps = 24/137 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKM 46
E ++ + K G ++ GD N D +
Sbjct: 134 EEMRAIIADR-KDGCSSLLVGDLNIAPLENDVWSHKQLLKIVSHTPIETETLEDLRIKGG 192
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--YDQSDLDTR 104
D + +++ R K D R +
Sbjct: 193 WSDLMRHLIAADQKIFTWWSYRAKDW-DAADRGRRLDHVWGSADLESHIKGLQVLRDARG 251
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ +D +
Sbjct: 252 WDRPSDHVPVIATFDLD 268
>gi|224438361|ref|ZP_03659288.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|313144803|ref|ZP_07806996.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|313129834|gb|EFR47451.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
Length = 251
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 30/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + + +K P VI GD N I + + +
Sbjct: 127 RAFVKK-LKKHKPVVICGDLNVAHKEIDLKNPKTNRRNAGFTDEERGKMSELLESGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + K+ + D + S
Sbjct: 186 FRHFYPTLEGAYSWWSYMGKARENNTGWRIDYFLCSTSLESHLKDAKI----YPHIFGSD 241
Query: 111 HCPLTIEYDF 120
HCP+ + D
Sbjct: 242 HCPVGLSMDM 251
>gi|157164085|ref|YP_001465973.1| exodeoxyribonuclease III [Campylobacter concisus 13826]
gi|112801830|gb|EAT99174.1| exodeoxyribonuclease III [Campylobacter concisus 13826]
Length = 252
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 27/128 (21%), Gaps = 23/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
+ + +K+G + GD N I +
Sbjct: 128 AYCKELVKSGKEVIFCGDVNTAHREIDLKNPKANAKTSGFLPIERAWIDEVLKSGFIDTF 187
Query: 53 IRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ ++ R + D + S H
Sbjct: 188 RAVNGDVADAYSWWSYRFNARAKNVGWRIDYFFISQGLKDRLKDAFILPEIVG----SDH 243
Query: 112 CPLTIEYD 119
CP+ IE +
Sbjct: 244 CPVGIEIE 251
>gi|71903215|ref|YP_280018.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
pyogenes MGAS6180]
gi|71802310|gb|AAX71663.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
pyogenes MGAS6180]
Length = 910
Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--ESTC 63
L ++A + K V+ GDFN + Q ++ ++ + +
Sbjct: 745 ANMLAQFAKEGAKHQANIVMLGDFNDFEFTKTI-----QLIEEGDMVNLVNRHDISDRYS 799
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ R + + S + S H PL ++ F K
Sbjct: 800 YFHQGNNQTLDNILVSRHLLDHYEFDMVH----VNSPFMEAHGRASDHDPLLLQLSFSKE 855
Query: 124 N 124
N
Sbjct: 856 N 856
>gi|256158498|ref|ZP_05456396.1| exodeoxyribonuclease III [Brucella ceti M490/95/1]
gi|256253917|ref|ZP_05459453.1| exodeoxyribonuclease III [Brucella ceti B1/94]
gi|261221054|ref|ZP_05935335.1| exodeoxyribonuclease III Xth [Brucella ceti B1/94]
gi|265997015|ref|ZP_06109572.1| exodeoxyribonuclease III Xth [Brucella ceti M490/95/1]
gi|260919638|gb|EEX86291.1| exodeoxyribonuclease III Xth [Brucella ceti B1/94]
gi|262551483|gb|EEZ07473.1| exodeoxyribonuclease III Xth [Brucella ceti M490/95/1]
Length = 268
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 31/137 (22%), Gaps = 24/137 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKM 46
E ++ + K G ++ GD N D +
Sbjct: 134 EEMRAIIADR-KDGCSSLLVGDLNIAPLENDVWSHKQLLKIVSHTPIETETLEDLRIKGG 192
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--YDQSDLDTR 104
D + +++ R K D R +
Sbjct: 193 WSDLMRHLIAADQKIYTWWSYRAKDW-DAADRGRRLDHVWGSADLESHIKGLQVLRDARG 251
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ +D +
Sbjct: 252 WDRPSDHVPVIATFDLD 268
>gi|228926225|ref|ZP_04089300.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228833478|gb|EEM79040.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 788
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + +++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NTNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|229090130|ref|ZP_04221380.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-42]
gi|228693207|gb|EEL46918.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-42]
Length = 788
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + +++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NTNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|190893818|ref|YP_001980360.1| exodeoxyribonuclease III protein [Rhizobium etli CIAT 652]
gi|190699097|gb|ACE93182.1| exodeoxyribonuclease III protein [Rhizobium etli CIAT 652]
Length = 267
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 28/131 (21%), Gaps = 21/131 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDG 50
K + ++ GD N + D
Sbjct: 137 KLLKANGEANTSAILVGDLNIAPLEHDVWSHKQLLKIVSHTPVETDGLLEVMRRGAWLDL 196
Query: 51 LLIRFPQEKESTCNVIKRNKSS-LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ P ++ R K D+ D + + + S
Sbjct: 197 MRQHVPASEKLYTWWSYRAKDWEAADRGRRLDHIWSSSDLGPHLKRIEILKEARGWDRPS 256
Query: 110 THCPLTIEYDF 120
H P+T +D
Sbjct: 257 DHVPVTAHFDL 267
>gi|170688095|ref|ZP_02879307.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0465]
gi|254682749|ref|ZP_05146610.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. CNEVA-9066]
gi|170667990|gb|EDT18741.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0465]
Length = 788
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + +++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NTNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|196037227|ref|ZP_03104538.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus NVH0597-99]
gi|196031469|gb|EDX70065.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus NVH0597-99]
Length = 788
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + +++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NTNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|167635355|ref|ZP_02393669.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0442]
gi|254740190|ref|ZP_05197882.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Kruger B]
gi|167529183|gb|EDR91936.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0442]
Length = 788
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + +++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NTNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|149278217|ref|ZP_01884355.1| exodeoxyribonuclease III [Pedobacter sp. BAL39]
gi|149230983|gb|EDM36364.1| exodeoxyribonuclease III [Pedobacter sp. BAL39]
Length = 256
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 31/126 (24%), Gaps = 22/126 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLI 53
+ +Q K +I+GD+N +I +
Sbjct: 134 YTEQLRKEIPNLIISGDYNICHTAIDIHNPKSNANSSGFLPEEREWMELFLNNGFIDTFR 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
F ++ R S D + + + S HCP
Sbjct: 194 HFNKDPHHYTWWSFRAGSRSKNLGWRIDYHLATVPMLDRLKNVTILADAV----HSDHCP 249
Query: 114 LTIEYD 119
+ +E +
Sbjct: 250 VLLELN 255
>gi|157961464|ref|YP_001501498.1| exonuclease III [Shewanella pealeana ATCC 700345]
gi|157846464|gb|ABV86963.1| exodeoxyribonuclease III [Shewanella pealeana ATCC 700345]
Length = 268
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 30/138 (21%), Gaps = 25/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L + ++ + I GD N +
Sbjct: 131 KDLMLYLNEYHSSDEDIAIIGDINISPVDLDIGIGEPNAKRWLKTGKCSFQPEEREWLKT 190
Query: 43 WQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
E+ E R+K +D + D + + D
Sbjct: 191 LMDWGLVDTFRELHPERSERYSWFDYRSKGFVDNRGLRIDVVLATKTLAERLTESDVDYD 250
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 251 LRGIDKPSDHAPIWSTFS 268
>gi|30261191|ref|NP_843568.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Ames]
gi|47777892|ref|YP_017700.2| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. 'Ames Ancestor']
gi|30254805|gb|AAP25054.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Ames]
gi|47551597|gb|AAT30175.2| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. 'Ames Ancestor']
Length = 583
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 468 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTIL---KNMLNTVPKENR 524
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + +++ ++S H P+ + D +
Sbjct: 525 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NTNIMKEHGRVSDHDPVLAQIDLK 580
Query: 122 KGN 124
K +
Sbjct: 581 KAS 583
>gi|117920043|ref|YP_869235.1| PKD domain-containing protein [Shewanella sp. ANA-3]
gi|117612375|gb|ABK47829.1| PKD domain containing protein [Shewanella sp. ANA-3]
Length = 948
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ +W ++ ++ GD N + L + +
Sbjct: 653 RAATAAGQWIAEQYPEQG-VLLIGDLNSYAKEDPLSALANAGFSE--LFAKLEKANP-YS 708
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDLDTRRS 106
V LD+ + + + + ++ Y+ Q +
Sbjct: 709 YVFSGESGQLDHALANTALVDKVVDVTEWHINTDEPRVLDYNEEFKTAAQVQDLYASDAY 768
Query: 107 KLSTHCPLTIEYDFEKGNV 125
+ S H P+ I E NV
Sbjct: 769 RSSDHDPVVISLLLEAENV 787
>gi|49184024|ref|YP_027276.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Sterne]
gi|65318458|ref|ZP_00391417.1| COG2374: Predicted extracellular nuclease [Bacillus anthracis str.
A2012]
gi|165871845|ref|ZP_02216488.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0488]
gi|167640270|ref|ZP_02398536.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0193]
gi|170707621|ref|ZP_02898073.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0389]
gi|177654201|ref|ZP_02936174.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0174]
gi|190566721|ref|ZP_03019638.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
Tsiankovskii-I]
gi|227816075|ref|YP_002816084.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. CDC 684]
gi|229604339|ref|YP_002865620.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0248]
gi|254725540|ref|ZP_05187322.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A1055]
gi|254734166|ref|ZP_05191879.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Western North America USA6153]
gi|254753529|ref|ZP_05205565.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Vollum]
gi|254758627|ref|ZP_05210654.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Australia 94]
gi|49177951|gb|AAT53327.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. Sterne]
gi|164712422|gb|EDR17956.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0488]
gi|167511871|gb|EDR87251.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0193]
gi|170127396|gb|EDS96271.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0389]
gi|172080908|gb|EDT65988.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
str. A0174]
gi|190562273|gb|EDV16241.1| endonuclease/exonuclease/phosphatase family [Bacillus anthracis
Tsiankovskii-I]
gi|227003436|gb|ACP13179.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. CDC 684]
gi|229268747|gb|ACQ50384.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0248]
Length = 788
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + QK T P V+ GD N + + ++ ++
Sbjct: 673 QLAQEVNNFVQGIQKKNTNAPVVVLGDMNDFEFAKPLKTLEGTIL---KNMLNTVPKENR 729
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N LD+ ++ + I + + +++ ++S H P+ + D +
Sbjct: 730 YTYIHEGNAQVLDHILVTNNIAPHTIVDPVHL----NTNIMKEHGRVSDHDPVLAQIDLK 785
Query: 122 KGN 124
K +
Sbjct: 786 KAS 788
>gi|327190170|gb|EGE57275.1| exodeoxyribonuclease III protein [Rhizobium etli CNPAF512]
Length = 267
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 28/131 (21%), Gaps = 21/131 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDG 50
K + ++ GD N + D
Sbjct: 137 KLLKANGEANTSAILVGDLNIAPLEHDVWSHKQLLKIVSHTPVETDGLLEVMRRGAWLDL 196
Query: 51 LLIRFPQEKESTCNVIKRNKSS-LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ P ++ R K D+ D + + + S
Sbjct: 197 MRQHVPASEKLYTWWSYRAKDWEAADRGRRLDHIWSSSDLGPHLKRIEILKEARGWDRPS 256
Query: 110 THCPLTIEYDF 120
H P+T +D
Sbjct: 257 DHVPVTAHFDL 267
>gi|212715599|ref|ZP_03323727.1| hypothetical protein BIFCAT_00498 [Bifidobacterium catenulatum DSM
16992]
gi|212660966|gb|EEB21541.1| hypothetical protein BIFCAT_00498 [Bifidobacterium catenulatum DSM
16992]
Length = 286
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 24/139 (17%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------ 48
ML++ E L+ + G V+ GDFN + + +
Sbjct: 151 MLAR-MEQLRD---EAAHGGKQAVLCGDFNIAHTPLDIKNAKANETHAGFLPEERAYVDK 206
Query: 49 --------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
D + + +R ++ + D + + + + +
Sbjct: 207 WLGELEFVDVMRDLAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETACGFVIDK 266
Query: 101 LDTRRSKLSTHCPLTIEYD 119
T + S H PL+I YD
Sbjct: 267 APTYDLRWSDHAPLSIMYD 285
>gi|209966061|ref|YP_002298976.1| endonuclease [Rhodospirillum centenum SW]
gi|209959527|gb|ACJ00164.1| endonuclease [Rhodospirillum centenum SW]
Length = 266
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 36/136 (26%), Gaps = 22/136 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMD 47
+ + +W ++ P ++ GD N + +
Sbjct: 131 DEMIRWWPEQRSPDRPMILVGDLNIAPLETDVWSHRQLLDVVSHTPVEVEKLTQVQRTLG 190
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-- 105
+ RF E E + R + + + + L R
Sbjct: 191 WVDAVRRFVPETEKLYTWWSYRSADWAASDRGRRLDHVWVTPPLAPALAGTTVLREARGW 250
Query: 106 -SKLSTHCPLTIEYDF 120
K S H P+ +++ F
Sbjct: 251 EPKPSDHVPVLVDFRF 266
>gi|325915043|ref|ZP_08177372.1| metal-dependent hydrolase [Xanthomonas vesicatoria ATCC 35937]
gi|325538741|gb|EGD10408.1| metal-dependent hydrolase [Xanthomonas vesicatoria ATCC 35937]
Length = 288
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 10/120 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L K+ IP V+ GDFN + D +
Sbjct: 179 REQAARLILSRIAKLPADIPVVLTGDFNSDPDKSTY--PTLTAALGDARTHAPKRNGPEN 236
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
D+ ++++ + + D S H P+ E+D+ +
Sbjct: 237 T--------FQDFSTHPTRRIDWILFRGLTPTRFTTLDERPGGILPSDHYPVLAEFDWPR 288
>gi|255536608|ref|YP_003096979.1| AP endonuclease domain protein [Flavobacteriaceae bacterium
3519-10]
gi|255342804|gb|ACU08917.1| AP endonuclease domain protein [Flavobacteriaceae bacterium
3519-10]
Length = 325
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 17/108 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
++ P ++AGDFN NS + L F + K
Sbjct: 235 KTIAESPYPVIVAGDFNAVPNSYEYYQ------LSENLKDVFVETGNGNSTSFHDYK--- 285
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
I + V Y RR+K+S H P+ E+
Sbjct: 286 ----IPIRIDYVFCSEEITPVRYTVD----RRAKMSDHYPIIAEFKIN 325
>gi|67459413|ref|YP_247037.1| exodeoxyribonuclease III [Rickettsia felis URRWXCal2]
gi|67004946|gb|AAY61872.1| Exodeoxyribonuclease III [Rickettsia felis URRWXCal2]
Length = 267
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 29/135 (21%), Gaps = 23/135 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT------------DDFWQKMDP----- 48
+++W +I GD N D +
Sbjct: 126 VRLMQEWLTTNRTKNDKIIIVGDLNIAPLEHDVWSSKQLRNVISHTDIERSLLVELQNSL 185
Query: 49 ---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDT 103
D P +++ RN R + + ++ +
Sbjct: 186 GFIDSSRHFVPFDEKFYTWWSYRNIDWKK-SNRGRRLDHIWVSDNLKDALFSIHLLSEAR 244
Query: 104 RRSKLSTHCPLTIEY 118
S S H P +
Sbjct: 245 DWSPPSDHVPYFVTL 259
>gi|188583700|ref|YP_001927145.1| exodeoxyribonuclease III Xth [Methylobacterium populi BJ001]
gi|179347198|gb|ACB82610.1| exodeoxyribonuclease III Xth [Methylobacterium populi BJ001]
Length = 269
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 35/134 (26%), Gaps = 25/134 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--------------------QKMDP 48
L+ W +++ P ++ GD N +
Sbjct: 139 LRAWGGRRVSG--PAILVGDLNVAPLEHDVWSHKQLLDVVSHTPVETEALETLRGEAGWI 196
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL--DTRRS 106
D + P+ ++ R+ + R + + + +
Sbjct: 197 DAARLLTPEPEKIYTWWSYRSPNWEL-ANKGRRLDHAWVSPDLAGTVRKVAVFHAARGWE 255
Query: 107 KLSTHCPLTIEYDF 120
K S H P+T+ +
Sbjct: 256 KPSDHVPVTLSLEL 269
>gi|13473590|ref|NP_105158.1| exodeoxyribonuclease III [Mesorhizobium loti MAFF303099]
gi|14024340|dbj|BAB50944.1| exodeoxyribonuclease III [Mesorhizobium loti MAFF303099]
Length = 268
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 12/131 (9%), Positives = 26/131 (19%), Gaps = 23/131 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIRFP 56
+ V+ GD N F +
Sbjct: 139 IRAEHTEVSASVLVGDLNIAPLEHDVWSHKQLLNVVSHTPVETENFEAMRLAGNWVDLMR 198
Query: 57 Q----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLST 110
+++ R + R + + Y+ + S
Sbjct: 199 HNVPLDQKLYTWWSYRAQDWEL-SNRGRRLDHVWSSPNLVQDFAGYEILRAARGWERPSD 257
Query: 111 HCPLTIEYDFE 121
H P+ +D +
Sbjct: 258 HVPVIARFDLD 268
>gi|168209710|ref|ZP_02635335.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|168217871|ref|ZP_02643496.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
gi|170712212|gb|EDT24394.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|182380111|gb|EDT77590.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
Length = 250
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 27/120 (22%), Gaps = 23/120 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
++ + V+ GD N I + + + F
Sbjct: 132 ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFSTLLSSGFIDTFRYFNP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + R + + D + I S HCP+ +
Sbjct: 192 DIEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEILG----SDHCPVKL 247
>gi|77163525|ref|YP_342051.1| endonuclease/exonuclease/phosphatase [Nitrosococcus oceani ATCC
19707]
gi|254436414|ref|ZP_05049919.1| endonuclease/exonuclease/phosphatase family [Nitrosococcus oceani
AFC27]
gi|300115646|ref|YP_003762220.1| endonuclease/exonuclease/phosphatase [Nitrosococcus watsoni C-113]
gi|76881839|gb|ABA56521.1| Endonuclease/exonuclease/phosphatase [Nitrosococcus oceani ATCC
19707]
gi|207087948|gb|EDZ65222.1| endonuclease/exonuclease/phosphatase family [Nitrosococcus oceani
AFC27]
gi|299541588|gb|ADJ29899.1| Endonuclease/exonuclease/phosphatase [Nitrosococcus watsonii C-113]
Length = 398
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 13/121 (10%)
Query: 3 SQQGEWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDF--WQKMDPDGLLIRFPQ 57
++ + L + W ++ + G P V+ GDFN +S G D + +G +
Sbjct: 157 RREAQQLDEYVNWLEENVAEGDPVVLMGDFNLPPDSAGFRDLAKVLKPAIREGATTLSAK 216
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E R + D D R +S H P+ I
Sbjct: 217 EG--------RYANLYDNIWYRPDALKIQEARIDRFPQRLGITHKLARKTVSDHAPVVIV 268
Query: 118 Y 118
Sbjct: 269 L 269
>gi|47096406|ref|ZP_00234000.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes str. 1/2a F6854]
gi|254900495|ref|ZP_05260419.1| hypothetical protein LmonJ_11794 [Listeria monocytogenes J0161]
gi|254913554|ref|ZP_05263566.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes J2818]
gi|254937865|ref|ZP_05269562.1| endonuclease/exonuclease/phosphatase [Listeria monocytogenes F6900]
gi|47015201|gb|EAL06140.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes str. 1/2a F6854]
gi|258610472|gb|EEW23080.1| endonuclease/exonuclease/phosphatase [Listeria monocytogenes F6900]
gi|293591565|gb|EFF99899.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes J2818]
Length = 256
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 4/103 (3%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P +I GDFN + + +K L+ + + R L
Sbjct: 158 ENSPVIILGDFNTEP-DTPTYNFITKKYQDAQLISQKHAKGPIGSFHDFR---PLRPINE 213
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ F + +Y+ + S H P+T D++
Sbjct: 214 LEKIDYIFVSEEFQVCTYETIVDEVDGFSASDHFPVTANLDWK 256
>gi|332526767|ref|ZP_08402869.1| extracellular nuclease-like protein [Rubrivivax benzoatilyticus
JA2]
gi|332111170|gb|EGJ11202.1| extracellular nuclease-like protein [Rubrivivax benzoatilyticus
JA2]
Length = 931
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 34/138 (24%), Gaps = 26/138 (18%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q E L+++ Q ++ GDFN D +Q + +
Sbjct: 669 QAEQLRRFVAQLQAASGSHDVLLVGDFNAYAQE----DPVFQFTGSGYVDEPGRFDASGY 724
Query: 63 CNVIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYD------------QSDLD 102
V LD+ + + + Y+
Sbjct: 725 SYVFDGAAGRLDHAISTATLSPKVSGARHWHINADESVAHDYNLEFKQPACAACAPDPYA 784
Query: 103 TRRSKLSTHCPLTIEYDF 120
+ S H P+ + +
Sbjct: 785 ATPYRSSDHDPVLVGLNL 802
>gi|261886262|ref|ZP_06010301.1| exodeoxyribonuclease III [Campylobacter fetus subsp. venerealis
str. Azul-94]
Length = 181
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 27/128 (21%), Gaps = 23/128 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLI 53
+ + + G + GD N I +
Sbjct: 58 YINALVSEGKGVIFCGDVNTAHRKIDLKNPKANSKTSGFLPIERAWIDRVIDSGFIDTFR 117
Query: 54 RFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + + R + D + + D S HC
Sbjct: 118 FINGDKENAYSWWSYRFNARAKNVGWRIDYFFISSNLKDKLKDAFILDSIEG----SDHC 173
Query: 113 PLTIEYDF 120
P+ IE D
Sbjct: 174 PVGIEIDL 181
>gi|223938378|ref|ZP_03630272.1| Endonuclease/exonuclease/phosphatase [bacterium Ellin514]
gi|223892947|gb|EEF59414.1| Endonuclease/exonuclease/phosphatase [bacterium Ellin514]
Length = 254
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 34/118 (28%), Gaps = 4/118 (3%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ E +++ + +KT +P ++ GDFN + + + PQ + +
Sbjct: 140 EKSAELVRQRI-EGLKTELPVILGGDFNGGAGTNAAYKILMEGDFLKDTWVTAPQHRGNV 198
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
L + + + S H P+ +F
Sbjct: 199 VGTFHGY---HKAVPNGPRIDWILTRGPVTAEAAEVITFSKSGEMPSDHFPIATWLEF 253
>gi|160871859|ref|ZP_02061991.1| exodeoxyribonuclease III [Rickettsiella grylli]
gi|159120658|gb|EDP45996.1| exodeoxyribonuclease III [Rickettsiella grylli]
Length = 254
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 35/127 (27%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLI 53
++ + F+I GD+N I + +
Sbjct: 132 LKKQRQQAGDFIICGDWNIAHKPIDLKNWRCNQKNSGFLPQERAWLTQVLGPIGYVDAFR 191
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ + R ++ + ++ +S + + + S H P
Sbjct: 192 ALNPQPDHYTWWSHRGRAWENNVGW--RIDYQIVSKEIKNKI--KSAMIYKDQRFSDHAP 247
Query: 114 LTIEYDF 120
L I+Y+F
Sbjct: 248 LIIDYNF 254
>gi|306843439|ref|ZP_07476040.1| exodeoxyribonuclease III [Brucella sp. BO1]
gi|306276130|gb|EFM57830.1| exodeoxyribonuclease III [Brucella sp. BO1]
Length = 268
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 31/137 (22%), Gaps = 24/137 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKM 46
E ++ + K G ++ GD N D +
Sbjct: 134 EEMRAIIADR-KDGCSSLLVGDLNIAPLENDVWSHKQLLKIVSHTPIETETLEDLRIKGG 192
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--YDQSDLDTR 104
D + +++ R K D R +
Sbjct: 193 WSDLMRHLIAADQKIFTWWSYRAKDW-DAADRGRRLDHVWGSADLESHIKGLQVLRDARG 251
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ +D +
Sbjct: 252 WDRPSDHVPVIATFDLD 268
>gi|182626631|ref|ZP_02954375.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|177908025|gb|EDT70604.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
Length = 250
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 27/120 (22%), Gaps = 23/120 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
++ + V+ GD N I + + + F
Sbjct: 132 ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFSTLLSSGFIDTFRYFNP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + R + + D + I S HCP+ +
Sbjct: 192 DLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEILG----SDHCPVKL 247
>gi|153006976|ref|YP_001381301.1| exodeoxyribonuclease III Xth [Anaeromyxobacter sp. Fw109-5]
gi|152030549|gb|ABS28317.1| exodeoxyribonuclease III Xth [Anaeromyxobacter sp. Fw109-5]
Length = 248
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 29/134 (21%), Gaps = 23/134 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDP 48
+ E L +W + G P V+AGD N ++++
Sbjct: 118 RFLEALDRWVEAACAAGRPLVVAGDLNVARTDQDVHPKERKAGAIGQRPDERAVFERILS 177
Query: 49 DGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
GL+ + D +
Sbjct: 178 HGLVDLGRAMDPTNEGLFTYWAPWRNLRQRNIGWRIDYVLVSAALARRATRCAV----LA 233
Query: 105 RSKLSTHCPLTIEY 118
S H PL E
Sbjct: 234 DFGTSDHAPLVAEL 247
>gi|319785687|ref|YP_004145162.1| endonuclease/exonuclease/phosphatase [Pseudoxanthomonas suwonensis
11-1]
gi|317464199|gb|ADV25931.1| Endonuclease/exonuclease/phosphatase [Pseudoxanthomonas suwonensis
11-1]
Length = 575
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 32/125 (25%), Gaps = 11/125 (8%)
Query: 5 QGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
L W V+ GDFN + E+
Sbjct: 453 SARRLHAWLKTHPVGSRAGRVVMLGDFNAYAMEDPLH-WLRSEGGWVDAFAAAGIERP-W 510
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPLT 115
V LD+ ++ L + V+ D+ D + S H PL
Sbjct: 511 SYVYDGLSGRLDHALLSPSLVPALRGAAEWHVNADEPDDAGYAGRNEPGPWRSSDHDPLL 570
Query: 116 IEYDF 120
+ +D
Sbjct: 571 LGFDL 575
>gi|313892072|ref|ZP_07825670.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
gi|313119524|gb|EFR42718.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
Length = 254
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 27/123 (21%), Gaps = 23/123 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ P ++ GD N I + +
Sbjct: 135 KLTESKPVILCGDLNVAHKEIDLANPSSNHKNAGFTDDERKKFSTLLENGFTDTFRYLYP 194
Query: 58 EKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+K+ + KS D I S HCP+ +
Sbjct: 195 DKKDAYSWWSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIHPEIQG----SDHCPVEL 250
Query: 117 EYD 119
+D
Sbjct: 251 TFD 253
>gi|229586510|ref|YP_002845011.1| Exodeoxyribonuclease III [Rickettsia africae ESF-5]
gi|228021560|gb|ACP53268.1| Exodeoxyribonuclease III [Rickettsia africae ESF-5]
Length = 271
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/138 (9%), Positives = 32/138 (23%), Gaps = 23/138 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKM 46
+++W +I GD N + + +
Sbjct: 126 VRLMQEWLTTNRTKNDKMIIVGDLNIAPHEHDVWSSKQLRNVISHTDIERSLLVELQNAL 185
Query: 47 DPDGLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDT 103
F +++ RN R + + ++ +
Sbjct: 186 GFIDSSRHFVSLDEKFYTWWSYRNIDWKK-SNRGRRLDHIWVSDNLKGALFSMHLLSEAR 244
Query: 104 RRSKLSTHCPLTIEYDFE 121
S S H P + ++ +
Sbjct: 245 DWSSPSDHVPYFVTFNLQ 262
>gi|161526271|ref|YP_001581283.1| exodeoxyribonuclease III Xth [Burkholderia multivorans ATCC 17616]
gi|189349015|ref|YP_001944643.1| exodeoxyribonuclease III [Burkholderia multivorans ATCC 17616]
gi|221214692|ref|ZP_03587662.1| exodeoxyribonuclease III [Burkholderia multivorans CGD1]
gi|160343700|gb|ABX16786.1| exodeoxyribonuclease III Xth [Burkholderia multivorans ATCC 17616]
gi|189333037|dbj|BAG42107.1| exodeoxyribonuclease III [Burkholderia multivorans ATCC 17616]
gi|221165582|gb|EED98058.1| exodeoxyribonuclease III [Burkholderia multivorans CGD1]
Length = 256
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 41/143 (28%), Gaps = 31/143 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++K ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAELKKTREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + + E R ++ + + +
Sbjct: 177 WLSKLFDDVGYVDVFRTLDPRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVASTAKS 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
S + K S H PLT++YD+
Sbjct: 235 TSIF--KDIKFSDHAPLTVDYDY 255
>gi|145590186|ref|YP_001156783.1| exodeoxyribonuclease III Xth [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145048592|gb|ABP35219.1| exodeoxyribonuclease III Xth [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 260
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 21/129 (16%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLL 52
+G V+ GD N + I + + ++ +
Sbjct: 133 HLIALKNSGREIVLCGDVNIAHHEIDLKNWKGNLKNSGFLPEERAWLTNLFDQVGYVDVY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ TC N+ + + S + + + + K S H
Sbjct: 193 RELEPKATETCYTWWSNRGQAYAKNVGWRIDYHISTPSIAASAKKTAVY--KDEKFSDHA 250
Query: 113 PLTIEYDFE 121
PLT++YD++
Sbjct: 251 PLTVDYDWK 259
>gi|312114912|ref|YP_004012508.1| exodeoxyribonuclease III Xth [Rhodomicrobium vannielii ATCC 17100]
gi|311220041|gb|ADP71409.1| exodeoxyribonuclease III Xth [Rhodomicrobium vannielii ATCC 17100]
Length = 268
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 34/134 (25%), Gaps = 24/134 (17%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDGL 51
L KW ++ V+ GDFN +
Sbjct: 136 ALAKW-ERGWTDDANAVLVGDFNVAPLETDVWSHKQLLKVVSHTPVEVEALTKVRVDGRW 194
Query: 52 LIRF----PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDTRR 105
+ P E++ R + R + + + + S
Sbjct: 195 VDLVRKVIPPEEKVYSWWSYRARDWA-ASDRGRRLDHIWGSAAMAERTRAVSVLKDARGW 253
Query: 106 SKLSTHCPLTIEYD 119
S H P+T++++
Sbjct: 254 PGPSDHVPVTLDFE 267
>gi|254459775|ref|ZP_05073191.1| endonuclease/exonuclease/phosphatase [Rhodobacterales bacterium
HTCC2083]
gi|206676364|gb|EDZ40851.1| endonuclease/exonuclease/phosphatase [Rhodobacteraceae bacterium
HTCC2083]
Length = 329
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 40/142 (28%), Gaps = 26/142 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------KMDPDGLL 52
Q WL+ ++ + G ++ GD N + F + D
Sbjct: 188 QAVWLRARVEEHLDAGEALMVLGDLNDGPGLDEYENLFGRSSVEIILGEIGCPCLYDPHA 247
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN-------SFSIVSYDQSDLDTRR 105
R + K R D + ++ + ++ I
Sbjct: 248 ARALKRKIGGEPTTSRFFLKKDNRYLQALLDYIMVSDDLRYKAKTWRIWHPFDDPECWVD 307
Query: 106 SKL-------STHCPLTIEYDF 120
KL S H P+T++ DF
Sbjct: 308 LKLRDALLTASDHFPVTLDLDF 329
>gi|315657850|ref|ZP_07910730.1| exodeoxyribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|315491647|gb|EFU81258.1| exodeoxyribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length = 286
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/147 (10%), Positives = 33/147 (22%), Gaps = 36/147 (24%)
Query: 9 LKKWADQKIKTGIPFV--IAGDFNRKINSIGDTD----------------DFWQKMDPDG 50
L+ + + T + GDFN D F + +DPD
Sbjct: 140 LRSHVIRTLDTDPESLGLYLGDFNVAPRDEDVWDMADFAGATHVSEPERQVFAKLLDPDT 199
Query: 51 LLIRFPQEK------------------ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
+ + + D +
Sbjct: 200 VADAVTLHDDLIEGLPGNLTEITRKFAPGWTYWDYQRARWRRNQGMKIDFALATPRLASR 259
Query: 93 IVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + S H P+ ++++
Sbjct: 260 VTGAYIDTAERDGEQPSDHAPVIVDFE 286
>gi|304438523|ref|ZP_07398463.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368606|gb|EFM22291.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 250
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 12/131 (9%), Positives = 28/131 (21%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + ++ P V+ GD N I + + +
Sbjct: 124 DAFRAFLLD-LRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFTELLNAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+
Sbjct: 183 VDTFRALYPDLTGAYTWWSYLRHARETNAGW--RIDYFLVSEELRDRIAAAEIHA--DVF 238
Query: 108 LSTHCPLTIEY 118
S HCP+++
Sbjct: 239 GSDHCPVSLTL 249
>gi|153008297|ref|YP_001369512.1| exodeoxyribonuclease III Xth [Ochrobactrum anthropi ATCC 49188]
gi|151560185|gb|ABS13683.1| exodeoxyribonuclease III Xth [Ochrobactrum anthropi ATCC 49188]
Length = 268
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 28/131 (21%), Gaps = 23/131 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKMDPDGLL 52
K G V+ GD N D + D +
Sbjct: 139 IVADRKDGHSSVLVGDLNIAPLENDVWSHKQLLKIVSHTPIETETLEDLRVKGGWSDLMR 198
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSKLST 110
P +++ R K R + + + S
Sbjct: 199 QLIPADQKIFTWWSYRAKDWA-ESDRGRRLDHVWGSADLEGYMQGLQILRDARGWDRPSD 257
Query: 111 HCPLTIEYDFE 121
H P+ +D +
Sbjct: 258 HVPVIATFDLD 268
>gi|308176289|ref|YP_003915695.1| extracellular nuclease [Arthrobacter arilaitensis Re117]
gi|307743752|emb|CBT74724.1| putative extracellular nuclease [Arthrobacter arilaitensis Re117]
Length = 638
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 22/136 (16%)
Query: 5 QGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q E L +AD+ ++ ++AGDFN Q + G + S
Sbjct: 509 QAEALVGFADELKKLRNTDQVLLAGDFNSYAAEDP-----MQVLIEAGYVDLGAAAD-SQ 562
Query: 63 CNVIKRNKSSLDYFVIDRDNK------NFLIDNSFSIVSYDQSDL--------DTRRSKL 108
+ SLD+ + N+ V Y+ S + +
Sbjct: 563 SYLYDGFVGSLDHIFASEKLAGKVTGEDIWNINAIESVGYEYSRYNNNITNLFTADQYRS 622
Query: 109 STHCPLTIEYDFEKGN 124
S H P+ + +K N
Sbjct: 623 SDHDPVLVGLQLDKKN 638
>gi|21241048|ref|NP_640630.1| nuclease [Xanthomonas axonopodis pv. citri str. 306]
gi|21106341|gb|AAM35166.1| nuclease [Xanthomonas axonopodis pv. citri str. 306]
Length = 609
Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 33/126 (26%), Gaps = 12/126 (9%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L +W D V+ GDFN + Q
Sbjct: 487 ESAKRLHQWLQTDPTGAQTKLAVLLGDFNAYAMETPMRSLRASGWQDAFAVAGVKQP--- 543
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPL 114
V LD+ ++ L + V+ D D + S H P+
Sbjct: 544 YSYVYDGLSGRLDHALLSPAMAKQLRGAAEWHVNADVMDAAGYAKRNLPGPWRSSDHDPV 603
Query: 115 TIEYDF 120
+ +
Sbjct: 604 LLGFSL 609
>gi|161869112|ref|YP_001598278.1| exodeoxyribonuclease [Neisseria meningitidis 053442]
gi|161594665|gb|ABX72325.1| exodeoxyribonuclease [Neisseria meningitidis 053442]
Length = 206
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLI 53
+ G V+ GD+N +I + + + +
Sbjct: 81 LEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEEREWIGKVIHKLGWTDMWR 140
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ R ++ ++ + S + K S H P
Sbjct: 141 TLYPDVPGYTWWSNRGQAYAKDVGW--RIDYQMVTPELAAK--AVSAHVYKDEKFSDHAP 196
Query: 114 LTIEYDF 120
L +EYD+
Sbjct: 197 LVMEYDY 203
>gi|78186003|ref|YP_374046.1| AP endonuclease [Chlorobium luteolum DSM 273]
gi|78165905|gb|ABB23003.1| AP endonuclease, family 1 [Chlorobium luteolum DSM 273]
Length = 267
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/136 (11%), Positives = 34/136 (25%), Gaps = 23/136 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDP 48
E + ++ + + G ++ GD N + + +
Sbjct: 126 EAMHEYVRELLACGRQILVTGDMNVAHRQVDLHRSENRPGATGIRPEERSAIDRLIALGL 185
Query: 49 DGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
++ E++ + D I+ K
Sbjct: 186 SDVMRELNPERDDLFTWWPYWRMARERNIGWRIDCFYLSGYRKDRILRAAVD----MPEK 241
Query: 108 LSTHCPLTIEYDFEKG 123
S H P+ +E+ E G
Sbjct: 242 SSDHAPIILEFVPESG 257
>gi|167644355|ref|YP_001682018.1| endonuclease/exonuclease/phosphatase [Caulobacter sp. K31]
gi|167346785|gb|ABZ69520.1| Endonuclease/exonuclease/phosphatase [Caulobacter sp. K31]
Length = 266
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 36/123 (29%), Gaps = 14/123 (11%)
Query: 3 SQQGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q L ++W P ++ GDFN + ++
Sbjct: 138 KRQAAALLGEQWM-AHEDWKAPGILLGDFNASP-YSATYRLLRAALRDAQTQSPTWKKTP 195
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + +D+ + + + + + + ++ S H PL ++ +
Sbjct: 196 TATFPSRFPFMRIDHVFLTKGLETVNVSSPYGPLARV----------ASDHLPLVVDLEI 245
Query: 121 EKG 123
Sbjct: 246 SPA 248
>gi|255025182|ref|ZP_05297168.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes FSL J2-003]
Length = 256
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
I P +I GDFN + N+ + D + + + L
Sbjct: 153 AAIIAENSPVIILGDFNTQPNTPTYNYITEKYQDAQ---LISQKPAKGPTGSFHDFHP-L 208
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N F + +Y+ + S H P+T D++
Sbjct: 209 RPENELEKIDYIFVSNEFQVSTYETIVDEVDGFSASDHFPVTANLDWK 256
>gi|170693993|ref|ZP_02885149.1| exodeoxyribonuclease III Xth [Burkholderia graminis C4D1M]
gi|170141065|gb|EDT09237.1| exodeoxyribonuclease III Xth [Burkholderia graminis C4D1M]
Length = 260
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 31/142 (21%)
Query: 3 SQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ ++ ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAQLAREREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + Q E R ++ + + +
Sbjct: 177 WLTKLFDEVGYVDVFRTLDQRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGIASKAKR 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
R K S H PLT++YD
Sbjct: 235 TEVF--RDIKFSDHAPLTVDYD 254
>gi|304407353|ref|ZP_07389006.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
gi|304343794|gb|EFM09635.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
Length = 255
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 12/132 (9%), Positives = 30/132 (22%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P ++ GD N I + +
Sbjct: 124 DRFRAYLLE-LDAQKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTTEERGKMTDLLESGF 182
Query: 50 -GLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
E+ ++ K D + +
Sbjct: 183 IDTFRHLHPERDDAFSWWSFMPKVRERNIGWRIDYFLASARLAPHVTDAGIDSAILG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ ++ +
Sbjct: 240 -SDHCPVMVQLE 250
>gi|256370404|ref|YP_003107915.1| exodeoxyribonuclease III [Brucella microti CCM 4915]
gi|256000567|gb|ACU48966.1| exodeoxyribonuclease III [Brucella microti CCM 4915]
Length = 268
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 24/137 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKM 46
E ++ + K G ++ GD N D +
Sbjct: 134 EEMRAIIADR-KDGCSSLLVGDLNIAPLENDVWSHKQLLKIVSHTPIETETLEDLRIKGG 192
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--YDQSDLDTR 104
D + +++ R K D R +
Sbjct: 193 WSDLMRHLIAADQKIYTWWSYRAKDW-DAADRGRRLDHVWGSADLESHIKGLQVLRDARG 251
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ ++ +
Sbjct: 252 WDRPSDHVPVIATFNLD 268
>gi|168205412|ref|ZP_02631417.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
gi|170663003|gb|EDT15686.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
Length = 250
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 27/120 (22%), Gaps = 23/120 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
++ + V+ GD N I + + + F
Sbjct: 132 ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFSTLLSSGFIDTFRYFNP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + R + + D + I S HCP+ +
Sbjct: 192 DLEGIYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEAFIDTEILG----SDHCPVKL 247
>gi|48477699|ref|YP_023405.1| exodeoxyribonuclease III [Picrophilus torridus DSM 9790]
gi|48430347|gb|AAT43212.1| exodeoxyribonuclease III [Picrophilus torridus DSM 9790]
Length = 250
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 22/120 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD--GLLIRFP 56
+K++ P +I GDFN I + + ++ F
Sbjct: 133 EKLRKEKPLIITGDFNVAHEEIDIARPKDNENNAGFTIQERNWMTEFLNHGYIDTYRYFH 192
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+E R + F++ + F + + K S H PL +
Sbjct: 193 KEPGHYSWWSYRFNARAKNIGW--RIDYFIVTDDFIKN--VKDSIILENVKGSDHAPLEL 248
>gi|84687987|ref|ZP_01015851.1| exodeoxyribonuclease III, putative [Maritimibacter alkaliphilus
HTCC2654]
gi|84664019|gb|EAQ10519.1| exodeoxyribonuclease III, putative [Rhodobacterales bacterium
HTCC2654]
Length = 262
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 27/132 (20%), Gaps = 22/132 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W + ++ GD N +
Sbjct: 133 MRDWF--HAEKPEKAILVGDLNIAPREDDVWNHKQLLKIVSHTPVEVEHLGAAQDAGKWV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + E R+ D+ D S + K
Sbjct: 191 DITRQDIPEGLLYSWWSYRSPDWDTADKGRRLDHIWATPDISNAAHGSRILRDVRGWEKP 250
Query: 109 STHCPLTIEYDF 120
S H P+ +D
Sbjct: 251 SDHAPVFATFDL 262
>gi|292670448|ref|ZP_06603874.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
gi|292647858|gb|EFF65830.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
Length = 250
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 12/121 (9%), Positives = 25/121 (20%), Gaps = 23/121 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
++ P V+ GD N I + + + +
Sbjct: 133 LRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFGELLAAGFVDTFRALYPD 192
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + FL+ S HCP+++
Sbjct: 193 RTGAYTWWSYLRHARETNAGW--RIDYFLVSAELRDRIAAAEIHS--DIFGSDHCPVSLT 248
Query: 118 Y 118
Sbjct: 249 L 249
>gi|296165787|ref|ZP_06848295.1| exodeoxyribonuclease III [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898860|gb|EFG78358.1| exodeoxyribonuclease III [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 322
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 12/132 (9%), Positives = 25/132 (18%), Gaps = 24/132 (18%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMD 47
WL+ +AGD+N +
Sbjct: 195 AGWLRD------DPAAQIALAGDWNIAPTDDDVWSTEFYAGATHVSEPERRAFAAIVDAQ 248
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
++ F + D + + + +
Sbjct: 249 FTDVVRPFAPGPGVYTYWDYTQLRFPKRQGMRIDFILASPALADRVTDAQIVREERKGKA 308
Query: 108 LSTHCPLTIEYD 119
S H P+ I+
Sbjct: 309 ASDHAPVQIDIR 320
>gi|290892528|ref|ZP_06555521.1| endonuclease/exonuclease/phosphatase [Listeria monocytogenes FSL
J2-071]
gi|290557837|gb|EFD91358.1| endonuclease/exonuclease/phosphatase [Listeria monocytogenes FSL
J2-071]
Length = 256
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 4/108 (3%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
I P ++ GDFN + N+ + D + + + L
Sbjct: 153 AAIIAENSPVIVLGDFNTQPNTPTYNYITEKYQDAQ---LISQKPAKGPTGSFHDFHP-L 208
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N F + +Y+ + S H P+T D++
Sbjct: 209 RPENELEKIDYIFVSNEFQVNTYETIVDEVDGFSASDHFPVTANLDWK 256
>gi|294054975|ref|YP_003548633.1| Endonuclease/exonuclease/phosphatase [Coraliomargarita akajimensis
DSM 45221]
gi|293614308|gb|ADE54463.1| Endonuclease/exonuclease/phosphatase [Coraliomargarita akajimensis
DSM 45221]
Length = 299
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 5/120 (4%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ E + ++ +P+++ GDFN S + + L P
Sbjct: 182 REAEACRNRIIERHDGDGNLPYLVVGDFNDHPRSSTLRRFYQR--GERELGHWVPAADSR 239
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
Y +D + + S D S S H + ++ DF
Sbjct: 240 GQVWTHFYAREYSYSTVDGFVASPELLPSIKNGRATIVDDPRTLS-ASDHRMVYLDLDFN 298
>gi|269468349|gb|EEZ80020.1| exonuclease III [uncultured SUP05 cluster bacterium]
Length = 255
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 34/134 (25%), Gaps = 23/134 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
E + + + G +++ GD N I + K
Sbjct: 126 IERFMPYLKKLQEDGRQYIVCGDINIVHKEIDIKNFASNKNHSGCLPEERAWMEQLFTEA 185
Query: 50 ---GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
QEK R ++ + ++ + +
Sbjct: 186 KFIDAFREVNQEKHQYTWWSNRGQAWANNTGW--RIDYQILSANLKDTPQRVEIY--KNE 241
Query: 107 KLSTHCPLTIEYDF 120
+ S H PL I+Y+
Sbjct: 242 RFSDHSPLIIDYNL 255
>gi|299768386|ref|YP_003730412.1| catabolite repression control protein [Acinetobacter sp. DR1]
gi|298698474|gb|ADI89039.1| catabolite repression control protein [Acinetobacter sp. DR1]
Length = 274
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 27/140 (19%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------F 42
L + + LK+W D+ +I GD+N I +
Sbjct: 143 LGEYAKILKQWRDE----NKSVIICGDYNIVHKRIDIKNWSGNQKSSGCLPHERAWLDHI 198
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ ++ E E R ++ + + +
Sbjct: 199 YDELGYVDTFRVVRAEAELYSWWSNRGQARAKNVGW--RIDYQACSPDWK--TRVANAWV 254
Query: 103 TRRSKLSTHCPLTIEYDFEK 122
+ S H P+ I+Y ++
Sbjct: 255 FKDQWFSDHAPVIIDYKIQE 274
>gi|225864161|ref|YP_002749539.1| putative secreted protein [Bacillus cereus 03BB102]
gi|225789553|gb|ACO29770.1| putative secreted protein [Bacillus cereus 03BB102]
Length = 264
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 11/131 (8%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +Q + W + + ++ GDFN S+ + +
Sbjct: 136 IRQEQMNTVNNWIENRASDYE--LLCGDFNDDPFSMVHQYLIRKHWIDVAQFKEIEENMI 193
Query: 61 STCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSI--------VSYDQSDLDTRRSKLSTH 111
+ + R N + D ++ +I + + + +S L + S H
Sbjct: 194 AQPTLDYRKNPNLKDDVKQEKRYDWIMIQENTAFEFPTIENVSIFGESALTSTGMFPSDH 253
Query: 112 CPLTIEYDFEK 122
+ ++ F +
Sbjct: 254 YGVFVDLKFNE 264
>gi|222150120|ref|YP_002551077.1| exodeoxyribonuclease III [Agrobacterium vitis S4]
gi|221737102|gb|ACM38065.1| exodeoxyribonuclease III [Agrobacterium vitis S4]
Length = 267
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 28/130 (21%), Gaps = 23/130 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKMDPDGLL 52
+ ++ GD N D + D +
Sbjct: 139 LSASAEPNTSAILVGDLNIAPLEHDVWSHKQLLKIVSHTPVETAGLLDVINRGGWVDLMR 198
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLST 110
++ R K D R + + + K S
Sbjct: 199 QLVDPSQKLYTWWSYRAKDW-DSADKGRRLDHIWSSPDLLPSLKTIEILREARGWEKPSD 257
Query: 111 HCPLTIEYDF 120
H P+T+++
Sbjct: 258 HVPVTVQFAL 267
>gi|261408787|ref|YP_003245028.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
gi|261285250|gb|ACX67221.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
Length = 250
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 30/132 (22%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + Q + P ++ GD N I + +
Sbjct: 124 ERFRTYLLQ-LDERKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMTDLLAAGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ K D + + +
Sbjct: 183 IDSFRHFYPDRTDVYSWWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAEIDCHVLG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+++ +
Sbjct: 240 -SDHCPVSLTLE 250
>gi|327312703|ref|YP_004328140.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
denticola F0289]
gi|326944135|gb|AEA20020.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
denticola F0289]
Length = 366
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 21/118 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E + ++ + + +P ++ GDFN S + + C
Sbjct: 264 QAEAVARYVRKYLDRKVPVILCGDFNDSPLSYTHRTIAREL---------------TDCY 308
Query: 65 VIKRNKSSLDY--FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V N + Y + + + F + S H P+ +
Sbjct: 309 VASGNGPGISYHKSGMYFRIDHIFCSDDFEPYGAKVDN----SVTASDHYPICCWLKY 362
>gi|308176500|ref|YP_003915906.1| exodeoxyribonuclease III [Arthrobacter arilaitensis Re117]
gi|307743963|emb|CBT74935.1| exodeoxyribonuclease III [Arthrobacter arilaitensis Re117]
Length = 279
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 12/139 (8%), Positives = 30/139 (21%), Gaps = 22/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI---------- 53
+ + + + ++ GD N + G++
Sbjct: 141 RFLQRMNVRLVELKNEKDHVLVVGDLNVVHTQKDIKNWKPNHNKRAGVMDEEIAYFDGFF 200
Query: 54 ------------RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ R ++ + D + +
Sbjct: 201 GPQIGYKDVARELAGDVQGPYTWWSFRGQAFDNDAGWRIDYHMATPALAAKAIKSHVDRA 260
Query: 102 DTRRSKLSTHCPLTIEYDF 120
+ S H PL ++Y F
Sbjct: 261 SAYDLRFSDHAPLVVDYQF 279
>gi|283955329|ref|ZP_06372828.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 414]
gi|283793089|gb|EFC31859.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 414]
Length = 252
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLI 53
+ D+ +K G +I GD N I T K+
Sbjct: 129 YLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLKLGFIDTFR 188
Query: 54 RFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E + R K+ D + + S H
Sbjct: 189 EINGEIKEKYSWWSYRMKARERNVGWRIDYFFISQGLQNRLKNAFI----REDIFGSDHA 244
Query: 113 PLTIEYD 119
P+ IE D
Sbjct: 245 PVGIEID 251
>gi|294339964|emb|CAZ88327.1| putative Nuclease [Thiomonas sp. 3As]
Length = 267
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 33/139 (23%), Gaps = 25/139 (17%)
Query: 3 SQQG--EWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------- 49
QQ +L + + + ++ GD N I + +
Sbjct: 130 RQQAKFRFLADFHEHLLALKAAGEVLLCGDVNIAHKEIDLKNWKGNLKNSGFLPEERAWM 189
Query: 50 ----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
+ + R ++ L + + S
Sbjct: 190 TRLIDEAGYVDVFRQLDPAPNRYTWWSNRGQARAKNVGW--RIDYHLATPGIAAQAKSDS 247
Query: 100 DLDTRRSKLSTHCPLTIEY 118
+ S H PLTI+Y
Sbjct: 248 AWIYTEQRFSDHAPLTIDY 266
>gi|190574562|ref|YP_001972407.1| putative exodeoxyribonuclease III protein [Stenotrophomonas
maltophilia K279a]
gi|190012484|emb|CAQ46112.1| putative EXODEOXYRIBONUCLEASE III PROTEIN [Stenotrophomonas
maltophilia K279a]
Length = 263
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 18/130 (13%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
E L + A ++ P ++ GDFN D ++++ G
Sbjct: 131 MERLIRHARSLVELPHPALLLGDFNVIPTDADVYDPKAWRRDALFQPEVRDAFERLLAQG 190
Query: 51 LL---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + + + D+ + + + K
Sbjct: 191 WTDALRKVHGDATIYTFWDYFRQHAERDRGLRIDHLLLNPVLAERLKDAGVDRWVRLQEK 250
Query: 108 LSTHCPLTIE 117
S H P +
Sbjct: 251 ASDHAPAWVT 260
>gi|217976524|ref|YP_002360671.1| exodeoxyribonuclease III Xth [Methylocella silvestris BL2]
gi|217501900|gb|ACK49309.1| exodeoxyribonuclease III Xth [Methylocella silvestris BL2]
Length = 270
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 30/135 (22%), Gaps = 23/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--------------------QKM 46
+ + W ++ GD N
Sbjct: 136 DEMAAWMHHGAIAASDAILVGDLNIAPLEADVWSHKALLRVVSHTPIEVEKFGVFQQAGP 195
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTR 104
D + P E++ R + R + L+ S +
Sbjct: 196 WVDAMRRYVPPEEKLYTWWSYRARDWAL-SGRGRRLDHVLVSESLAPRLGGMKVLTESRG 254
Query: 105 RSKLSTHCPLTIEYD 119
+ S H P+ + +D
Sbjct: 255 WERPSDHVPVIVRFD 269
>gi|262280501|ref|ZP_06058285.1| catabolite repression control protein [Acinetobacter calcoaceticus
RUH2202]
gi|262258279|gb|EEY77013.1| catabolite repression control protein [Acinetobacter calcoaceticus
RUH2202]
Length = 280
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 27/140 (19%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------F 42
L + + LK+W D+ +I GD+N I +
Sbjct: 149 LGEYAKILKQWRDE----NKSVIICGDYNIVHKRIDIKNWSGNQKSSGCLPHERAWLDHI 204
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ ++ E E R ++ + + +
Sbjct: 205 YDELGYVDTFRIVRAEAELYSWWSNRGQARAKNVGW--RIDYQACSPDWK--TRTTNAWV 260
Query: 103 TRRSKLSTHCPLTIEYDFEK 122
+ S H P+ I+Y ++
Sbjct: 261 FKDQWFSDHAPVIIDYKIQE 280
>gi|226953375|ref|ZP_03823839.1| exodeoxyribonuclease III [Acinetobacter sp. ATCC 27244]
gi|226835913|gb|EEH68296.1| exodeoxyribonuclease III [Acinetobacter sp. ATCC 27244]
Length = 274
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 37/140 (26%), Gaps = 27/140 (19%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------F 42
L + + LK+W D+ ++ GD+N I +
Sbjct: 143 LEEYAKILKQWRDE----NKSIIVCGDYNIVHKRIDIKNWSGNQKSSGVLPHERAWLDHI 198
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ ++ E E R ++ + + +
Sbjct: 199 YDELGYVDTFREVRPEAELYSWWSNRGQARAKNVGW--RIDYHACSPDWKARTANAWVYK 256
Query: 103 TRRSKLSTHCPLTIEYDFEK 122
+ S H P+ I+Y +
Sbjct: 257 EQWF--SDHAPVIIDYKIHE 274
>gi|153951075|ref|YP_001397480.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. doylei
269.97]
gi|152938521|gb|ABS43262.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. doylei
269.97]
Length = 259
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLI 53
+ ++ +K G +I GD N I T K+
Sbjct: 136 YLNKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLKLGFVDTFR 195
Query: 54 RFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E + R K+ F I + S H
Sbjct: 196 EINGEIKEKYSWWSYRMKARERNVGW--RIDYFFISKGLKDKLKNA--FIRDDIFGSDHA 251
Query: 113 PLTIEYD 119
P+ IE D
Sbjct: 252 PVGIEID 258
>gi|329120913|ref|ZP_08249545.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
gi|327471372|gb|EGF16823.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
Length = 254
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 27/123 (21%), Gaps = 23/123 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ P ++ GD N I + +
Sbjct: 135 KLTESKPVILCGDLNVAHKEIDLANPSSNHKNAGFTDDERKKFSTLLENGFTDTFRYLYP 194
Query: 58 EKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+K+ + KS D I S HCP+ +
Sbjct: 195 DKKDAYSWWSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIHPEIQG----SDHCPVEL 250
Query: 117 EYD 119
+D
Sbjct: 251 TFD 253
>gi|306827643|ref|ZP_07460923.1| endonuclease/exonuclease/phosphatase [Streptococcus pyogenes ATCC
10782]
gi|304430206|gb|EFM33235.1| endonuclease/exonuclease/phosphatase [Streptococcus pyogenes ATCC
10782]
Length = 910
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--ESTC 63
L ++A + K V+ GDFN + Q ++ ++ + +
Sbjct: 745 ANMLAQFAKEGAKHQANIVMLGDFNDFEFTKTI-----QLIEEGDMVNLVSRHDISDRYS 799
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ R + + S + S H PL ++ F K
Sbjct: 800 YFHQGNNQTLDNILVSRHLLDHYEFDMVH----VNSPFMEAHGRASDHDPLLLQLSFSKE 855
Query: 124 N 124
N
Sbjct: 856 N 856
>gi|139474060|ref|YP_001128776.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
pyogenes str. Manfredo]
gi|134272307|emb|CAM30561.1| endonuclease/exonuclease/phosphatase family surface anchored
protein [Streptococcus pyogenes str. Manfredo]
Length = 910
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--ESTC 63
L ++A + K V+ GDFN + Q ++ ++ + +
Sbjct: 745 ANMLAQFAKEGAKHQANIVMLGDFNDFEFTKTI-----QLIEEGDMVNLVSRHDISDRYS 799
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ R + + S + S H PL ++ F K
Sbjct: 800 YFHQGNNQTLDNILVSRHLLDHYEFDMVH----VNSPFMEAHGRASDHDPLLLQLSFSKE 855
Query: 124 N 124
N
Sbjct: 856 N 856
>gi|126643348|ref|YP_001086332.1| catabolite repression control protein [Acinetobacter baumannii ATCC
17978]
Length = 229
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 27/140 (19%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------F 42
L + + LK+W D+ +I GD+N I +
Sbjct: 98 LGEYAKILKQWRDE----NKSIIICGDYNIVHKRIDIKNWSGNQKSSGCLPHERAWLDHI 153
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ ++ E E R ++ + +
Sbjct: 154 YDELGYVDTFRVVRTEAELYSWWSNRGQARAKNVGW--RIDYHACSPDWKA--RTVNAWV 209
Query: 103 TRRSKLSTHCPLTIEYDFEK 122
+ S H P+ I+Y ++
Sbjct: 210 YKDQWFSDHAPVIIDYKIQE 229
>gi|94994049|ref|YP_602147.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
pyogenes MGAS10750]
gi|94547557|gb|ABF37603.1| Endonuclease/Exonuclease/phosphatase family protein [Streptococcus
pyogenes MGAS10750]
Length = 910
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--ESTC 63
L ++A + K V+ GDFN + Q ++ ++ + +
Sbjct: 745 ANMLAQFAKEGAKHQANIVMLGDFNDFEFTKTI-----QLIEEGDMVNLVSRHDISDRYS 799
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ R + + S + S H PL ++ F K
Sbjct: 800 YFHQGNNQTLDNILVSRHLLDHYEFDMVH----VNSPFMEAHGRASDHDPLLLQLSFSKE 855
Query: 124 N 124
N
Sbjct: 856 N 856
>gi|94990135|ref|YP_598235.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
pyogenes MGAS10270]
gi|94543643|gb|ABF33691.1| Endonuclease/Exonuclease/phosphatase family protein [Streptococcus
pyogenes MGAS10270]
Length = 910
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--ESTC 63
L ++A + K V+ GDFN + Q ++ ++ + +
Sbjct: 745 ANMLAQFAKEGAKHQANIVMLGDFNDFEFTKTI-----QLIEEGDMVNLVSRHDISDRYS 799
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ R + + S + S H PL ++ F K
Sbjct: 800 YFHQGNNQTLDNILVSRHLLDHYEFDMVH----VNSPFMEAHGRASDHDPLLLQLSFSKE 855
Query: 124 N 124
N
Sbjct: 856 N 856
>gi|94988256|ref|YP_596357.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
pyogenes MGAS9429]
gi|94992130|ref|YP_600229.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
pyogenes MGAS2096]
gi|94541764|gb|ABF31813.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
pyogenes MGAS9429]
gi|94545638|gb|ABF35685.1| Endonuclease/Exonuclease/phosphatase family protein [Streptococcus
pyogenes MGAS2096]
Length = 910
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--ESTC 63
L ++A + K V+ GDFN + Q ++ ++ + +
Sbjct: 745 ANMLAQFAKEGAKHQANIVMLGDFNDFEFTKTI-----QLIEEGDMVNLVSRHDISDRYS 799
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ R + + S + S H PL ++ F K
Sbjct: 800 YFHQGNNQTLDNILVSRHLLDHYEFDMVH----VNSPFMEAHGRASDHDPLLLQLSFSKE 855
Query: 124 N 124
N
Sbjct: 856 N 856
>gi|50913934|ref|YP_059906.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
pyogenes MGAS10394]
gi|50903008|gb|AAT86723.1| Endonuclease/Exonuclease/phosphatase family protein [Streptococcus
pyogenes MGAS10394]
Length = 910
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--ESTC 63
L ++A + K V+ GDFN + Q ++ ++ + +
Sbjct: 745 ANMLAQFAKEGAKHQANIVMLGDFNDFEFTKTI-----QLIEEGDMVNLVSRHDISDRYS 799
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ R + + S + S H PL ++ F K
Sbjct: 800 YFHQGNNQTLDNILVSRHLLDHYEFDMVH----VNSPFMEAHGRASDHDPLLLQLSFSKE 855
Query: 124 N 124
N
Sbjct: 856 N 856
>gi|19745837|ref|NP_606973.1| hypothetical protein spyM18_0808 [Streptococcus pyogenes MGAS8232]
gi|19747984|gb|AAL97472.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
Length = 910
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--ESTC 63
L ++A + K V+ GDFN + Q ++ ++ + +
Sbjct: 745 ANMLAQFAKEGAKHQANIVMLGDFNDFEFTKTI-----QLIEEGDMVNLVSRHDISDRYS 799
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ R + + S + S H PL ++ F K
Sbjct: 800 YFHQGNNQTLDNILVSRHLLDHYEFDMVH----VNSPFMEAHGRASDHDPLLLQLSFSKE 855
Query: 124 N 124
N
Sbjct: 856 N 856
>gi|15674798|ref|NP_268972.1| hypothetical protein SPy_0747 [Streptococcus pyogenes M1 GAS]
gi|71910384|ref|YP_281934.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
pyogenes MGAS5005]
gi|13621927|gb|AAK33693.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71853166|gb|AAZ51189.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
pyogenes MGAS5005]
Length = 910
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--ESTC 63
L ++A + K V+ GDFN + Q ++ ++ + +
Sbjct: 745 ANMLAQFAKEGAKHQANIVMLGDFNDFEFTKTI-----QLIEEGDMVNLVSRHDISDRYS 799
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ R + + S + S H PL ++ F K
Sbjct: 800 YFHQGNNQTLDNILVSRHLLDHYEFDMVH----VNSPFMEAHGRASDHDPLLLQLSFSKE 855
Query: 124 N 124
N
Sbjct: 856 N 856
>gi|21910025|ref|NP_664293.1| hypothetical protein SpyM3_0489 [Streptococcus pyogenes MGAS315]
gi|28896277|ref|NP_802627.1| hypothetical protein SPs1365 [Streptococcus pyogenes SSI-1]
gi|21904215|gb|AAM79096.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28811528|dbj|BAC64460.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 910
Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--ESTC 63
L ++A + K V+ GDFN + Q ++ ++ + +
Sbjct: 745 ANMLAQFAKEGAKHQANIVMLGDFNDFEFTKTI-----QLIEEGDMVNLVSRHDISDRYS 799
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ R + + S + S H PL ++ F K
Sbjct: 800 YFHQGNNQTLDNILVSRHLLDHYEFDMVH----VNSPFMEAHGRASDHDPLLLQLSFSKE 855
Query: 124 N 124
N
Sbjct: 856 N 856
>gi|205356520|ref|ZP_03223283.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni CG8421]
gi|205345525|gb|EDZ32165.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni CG8421]
Length = 259
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLI 53
+ D+ +K G +I GD N I T K+
Sbjct: 136 YLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLKLGFIDTFR 195
Query: 54 RFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E + R K+ F I + S H
Sbjct: 196 EINGEIKEKYSWWSYRMKARERNVGW--RIDYFFISKGLKDKLKNA--FIRDDIFGSDHA 251
Query: 113 PLTIEYD 119
P+ IE D
Sbjct: 252 PVGIEID 258
>gi|171464285|ref|YP_001798398.1| exodeoxyribonuclease III Xth [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171193823|gb|ACB44784.1| exodeoxyribonuclease III Xth [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 260
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 37/129 (28%), Gaps = 21/129 (16%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLL 52
K G V+ GD N I + + K+ +
Sbjct: 133 HLVALKKLGREIVLCGDVNIAHQEIDLKNWKGNLKNSGFLPEERAWLTNLFSKVGYVDVY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + TC N+ + + + + + + K S H
Sbjct: 193 RQLEPKATETCYTWWSNRGQAYAKNVGWRIDYHISTPGIAQTAKKATVY--KDEKFSDHA 250
Query: 113 PLTIEYDFE 121
PLT++YD++
Sbjct: 251 PLTVDYDWK 259
>gi|85858539|ref|YP_460741.1| exodeoxyribonuclease III [Syntrophus aciditrophicus SB]
gi|85721630|gb|ABC76573.1| exodeoxyribonuclease III [Syntrophus aciditrophicus SB]
Length = 267
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 34/129 (26%), Gaps = 20/129 (15%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIR 54
+++ QK + P V GD N I D + ++ GL
Sbjct: 137 REYLVQKWSSDAPLVWCGDLNVAPEQIDVHDPKRLLGHVCFNPEVWDAFDRVKSWGLEDL 196
Query: 55 FPQEKES----TCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F + R +S D+ + S + K S
Sbjct: 197 FRKHHPGEVECYTFFDYRVPRSVERKLGWRIDHILSTPALAAHCDSCNIDMNPRMAEKPS 256
Query: 110 THCPLTIEY 118
H L E+
Sbjct: 257 DHTILVAEF 265
>gi|313625229|gb|EFR95070.1| endonuclease/exonuclease/phosphatase family protein [Listeria
innocua FSL J1-023]
Length = 256
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 27/107 (25%), Gaps = 4/107 (3%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
I P +I GDFN N+ + D + + + L
Sbjct: 153 AAIIAGDSPVIILGDFNTAPNTTTYNYITKKYRDAQ---LISQTPIKGPIGSFHDFQP-L 208
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + SY S H P+T ++
Sbjct: 209 RPENELEKIDYIFVSKELRVCSYKTITDQVDGCSASDHFPVTATLEW 255
>gi|319408771|emb|CBI82428.1| exodeoxyribonuclease III [Bartonella schoenbuchensis R1]
Length = 263
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 35/131 (26%), Gaps = 17/131 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
E L A + P ++AGD+N + +Q++ G
Sbjct: 128 MERLYTHAKSLLAYEDPLILAGDYNVIPTPLDAKKPEEWKNDALFLPQTRQAFQRIIYLG 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKL 108
+ + ++ + L+ +V K
Sbjct: 188 FYDSIRNVTDDSSFSFWDFQAGAWRKNNGIRIDHLLLSPEAADQLVCAYSQTEVRGYEKP 247
Query: 109 STHCPLTIEYD 119
S H P+ IE +
Sbjct: 248 SDHVPVWIELN 258
>gi|169345728|ref|ZP_02865687.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169297128|gb|EDS79244.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 250
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 27/120 (22%), Gaps = 23/120 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
++ + V+ GD N I + + + F
Sbjct: 132 ELSSKKGVVVCGDLNVAHKEIDLKNPKTNRKNAGFTDEERDKFSTLLSSGFIDTFRYFNP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + R + + D + I S HCP+ +
Sbjct: 192 DLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEAFIDTEILG----SDHCPVKL 247
>gi|302404834|ref|XP_003000254.1| endonuclease/exonuclease/phosphatase family protein [Verticillium
albo-atrum VaMs.102]
gi|261360911|gb|EEY23339.1| endonuclease/exonuclease/phosphatase family protein [Verticillium
albo-atrum VaMs.102]
Length = 298
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 7/124 (5%)
Query: 3 SQQGEWL-----KKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP 56
+Q L +WA+++ ++ GDFN + + P
Sbjct: 164 REQSAKLILRIAAQWAEERASSPPAAVILGGDFNSNPSDNAYKSMVAKGSGMADAHALVP 223
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-SKLSTHCPLT 115
EK + + D + D + ++ + ++ LS H P+
Sbjct: 224 SEKRYGNELTYTSFDEPDQQAVRIDFIFVKVPSNVKVTTFGVLTNRFDDGVFLSDHRPVV 283
Query: 116 IEYD 119
+ +
Sbjct: 284 ADLE 287
>gi|163853428|ref|YP_001641471.1| exodeoxyribonuclease III Xth [Methylobacterium extorquens PA1]
gi|254563357|ref|YP_003070452.1| exodeoxyribonuclease III [Methylobacterium extorquens DM4]
gi|163665033|gb|ABY32400.1| exodeoxyribonuclease III Xth [Methylobacterium extorquens PA1]
gi|254270635|emb|CAX26639.1| Exodeoxyribonuclease III (Exonuclease III) (EXO III) (AP
endonuclease VI) [Methylobacterium extorquens DM4]
Length = 269
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 14/134 (10%), Positives = 35/134 (26%), Gaps = 25/134 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--------------------QKMDP 48
L+ W +++ P ++ GD N +
Sbjct: 139 LRVWGGRRVSG--PAILVGDLNVAPLEHDVWSHKQLLDVVSHTPVETEALETLRGEAGWI 196
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDTRRS 106
D + P+ ++ R+ + R + + + +
Sbjct: 197 DAARLLTPEPEKIYTWWSYRSPNWEL-ANKGRRLDHTWVSPDLAGTVRRVAVFREARGWE 255
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+T+ +
Sbjct: 256 RPSDHVPVTLTLEL 269
>gi|116333326|ref|YP_794853.1| exonuclease III [Lactobacillus brevis ATCC 367]
gi|116098673|gb|ABJ63822.1| Exonuclease III [Lactobacillus brevis ATCC 367]
Length = 254
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 26/122 (21%), Gaps = 23/122 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDGLLIRFP 56
QK+ P + GD N I + F
Sbjct: 131 QKLDAQKPVIFCGDLNVAHTEIDLKNPKTNHHNAGFTDEERAKMTALLAAGYTDTFRYFN 190
Query: 57 QE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ E R + + D + D S HCP+
Sbjct: 191 PDVTERYSWWSYRFHARDNNAGWRIDYFITSQRLQNHLQDAKILDQIMG----SDHCPVE 246
Query: 116 IE 117
++
Sbjct: 247 LD 248
>gi|308446216|ref|XP_003087123.1| hypothetical protein CRE_30356 [Caenorhabditis remanei]
gi|308261295|gb|EFP05248.1| hypothetical protein CRE_30356 [Caenorhabditis remanei]
Length = 297
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 15/148 (10%), Positives = 29/148 (19%), Gaps = 35/148 (23%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL--------------- 51
+ + DQ I GDFN + L
Sbjct: 147 DAMGVRLDQLAAERELVTIVGDFNVGHREFDIKNWKGNVKRSGFLPRERAYFDRFFGPRG 206
Query: 52 --------------------LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF 91
+ R ++ + D
Sbjct: 207 ETVVGVDGSEGVGHGWIDVGRRWAGEVDGPYSWWSNRGQAFDNDTGWRIDYHVVTPQLGE 266
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +Y + + S H P+ ++Y
Sbjct: 267 RVENYVIDRAASYDERWSDHAPVVVDYR 294
>gi|154497021|ref|ZP_02035717.1| hypothetical protein BACCAP_01314 [Bacteroides capillosus ATCC
29799]
gi|150273420|gb|EDN00548.1| hypothetical protein BACCAP_01314 [Bacteroides capillosus ATCC
29799]
Length = 250
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 32/131 (24%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ L+ + + + + P + GD N I + + +
Sbjct: 124 DALRAYLLE-LDSRKPVIYCGDLNVAHQEIDLKNAKSNRGNAGFTDEERAKMTQLLEAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + FL+ S + D
Sbjct: 183 VDSFRHLYPDKTGAYSWWSYMFHAREKNAGW--RIDYFLVSKSIADKIGDSIIHP--EIM 238
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 239 GSDHCPVELDI 249
>gi|329768092|ref|ZP_08259601.1| exodeoxyribonuclease III [Gemella haemolysans M341]
gi|328838247|gb|EGF87859.1| exodeoxyribonuclease III [Gemella haemolysans M341]
Length = 254
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 30/122 (24%), Gaps = 23/122 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQE-- 58
++ V+ GD N I + + K+ G + F
Sbjct: 132 ELNKTKGIVVCGDLNVAHTEIDLKNPKSNTKNAGFTQEEREKFTKLLDAGFIDTFRYYNP 191
Query: 59 --KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ R + + D D + S + S HCP+ +
Sbjct: 192 DLTGAYSWWSYRFNARKNNAGWRIDYFLVSRDLEKYLESAAIHNEIFG----SDHCPVEL 247
Query: 117 EY 118
Sbjct: 248 VL 249
>gi|319652957|ref|ZP_08007062.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
gi|317395306|gb|EFV76039.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
Length = 251
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 31/132 (23%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E ++++ + P ++ GD N I + + +
Sbjct: 124 ERIREYLLG-LDQIKPVIMCGDLNVAHFEIDLKNAKSNRGNSGFTDEERGKMTRLLGSGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
E + + K F++
Sbjct: 183 VDAFRYKYPEAEGAYTWWSYMAKVRERNIGW--RIDYFIVSEKLKERIL--DSQIHCDIM 238
Query: 108 LSTHCPLTIEYD 119
S HCP+ +E +
Sbjct: 239 GSDHCPVALELE 250
>gi|56477309|ref|YP_158898.1| exodeoxyribonuclease III [Aromatoleum aromaticum EbN1]
gi|56313352|emb|CAI07997.1| exodeoxyribonuclease III [Aromatoleum aromaticum EbN1]
Length = 260
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 32/129 (24%), Gaps = 21/129 (16%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------------GLL 52
G ++ GD+N I + + + +
Sbjct: 133 HLATLRNCGREIIVCGDWNIAHREIDLKNWKSNQKNSGFLPEERAWFSRVLEEQAWVDVY 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
R + N+ + + + + + + + S H
Sbjct: 193 RRLYPDAGGEGYTWWSNRGQAWAKNVGWRLDYQIATPGIAATAKSAAVY--KAERFSDHA 250
Query: 113 PLTIEYDFE 121
PL ++YDF
Sbjct: 251 PLAVDYDFS 259
>gi|238022209|ref|ZP_04602635.1| hypothetical protein GCWU000324_02116 [Kingella oralis ATCC 51147]
gi|237866823|gb|EEP67865.1| hypothetical protein GCWU000324_02116 [Kingella oralis ATCC 51147]
Length = 257
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 41/144 (28%), Gaps = 29/144 (20%)
Query: 3 SQQG---EWLKKW---ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK----------- 45
+Q ++L + + I TG V+ GD+N +I + +
Sbjct: 117 ERQAYKYQFLDAFYPILAELIATGRDIVVCGDWNIAHQNIDIKNWKGNQKNSGFLPEERA 176
Query: 46 --------MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + R ++ + + + +
Sbjct: 177 WIGRVIADLGWVDTWRTLYPDVAGYTWWSNRGQAYAKDVGW--RIDYQMTTPALAATAQA 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFE 121
+ +K S H PL I+YD+
Sbjct: 235 AHVY--KETKFSDHAPLVIDYDYS 256
>gi|114762656|ref|ZP_01442090.1| endonuclease/exonuclease/phosphatase family protein [Pelagibaca
bermudensis HTCC2601]
gi|114544566|gb|EAU47572.1| endonuclease/exonuclease/phosphatase family protein [Roseovarius
sp. HTCC2601]
Length = 333
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 41/141 (29%), Gaps = 25/141 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKI--------------------NSIGDTDDFWQ 44
Q WL++ + ++ G ++ GD N D +
Sbjct: 193 QAIWLRRRVEALLEEGESVIVMGDLNDGPGLDEYEHLFGRSSVEIVLGDGGPPLFDPHAE 252
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSYDQS 99
+ + + + ++ LDY ++ D + V +
Sbjct: 253 RALASKFGAQPTTARFYLKPEKRYMQAMLDYIMVSEDLARTRPSWRIWHPFDDPVCWRTP 312
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
+L S H P+T++ D
Sbjct: 313 ELREALLDASDHFPVTLDIDL 333
>gi|294495018|ref|YP_003541511.1| exodeoxyribonuclease III [Methanohalophilus mahii DSM 5219]
gi|292666017|gb|ADE35866.1| exodeoxyribonuclease III [Methanohalophilus mahii DSM 5219]
Length = 244
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 33/130 (25%), Gaps = 22/130 (16%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------ 49
++ + + G V+ GD N +I +
Sbjct: 118 AFLEYTQELRQEGYSVVVCGDLNTAHKAIDIARPKQNEKRSGFLPVEREWIDKFLSHGFL 177
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F +E+ + + ++ D D + T S
Sbjct: 178 DTFRLFNEEEGNYTWWDLKTRARDRNVGWRLDYFFVSADLKQGVKEAFILSEVTG----S 233
Query: 110 THCPLTIEYD 119
HCP+ +E D
Sbjct: 234 DHCPVGLELD 243
>gi|57237312|ref|YP_178325.1| exodeoxyribonuclease III [Campylobacter jejuni RM1221]
gi|148926400|ref|ZP_01810084.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni CG8486]
gi|57166116|gb|AAW34895.1| exodeoxyribonuclease III [Campylobacter jejuni RM1221]
gi|145844792|gb|EDK21897.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni CG8486]
Length = 259
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLI 53
+ D+ +K G +I GD N I T K+
Sbjct: 136 YLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLKLGFIDTFR 195
Query: 54 RFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E + R K+ F I + S H
Sbjct: 196 EINGEIKEKYSWWSYRMKARERNVGW--RIDYFFISKGLKDKLKNA--FIRDDIFGSDHA 251
Query: 113 PLTIEYD 119
P+ IE D
Sbjct: 252 PVGIEID 258
>gi|260061391|ref|YP_003194471.1| hypothetical protein RB2501_07320 [Robiginitalea biformata
HTCC2501]
gi|88785523|gb|EAR16692.1| hypothetical protein RB2501_07320 [Robiginitalea biformata
HTCC2501]
Length = 255
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 7/121 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + + G+P V+ GD N + +S + F Q ++
Sbjct: 141 RESVSLILRQMARVNAAGLPVVLMGDLNLEPDSAPIRQLANS------MDDAFDQAGQAA 194
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV-SYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ R V S+ T S H P+ +F
Sbjct: 195 YGPPGTFNGFDCTQPVTRRIDYIFTGPGDFTVRSHAILSEFTGLGFPSDHFPVLARLEFS 254
Query: 122 K 122
+
Sbjct: 255 E 255
>gi|325860217|ref|ZP_08173342.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
denticola CRIS 18C-A]
gi|325482304|gb|EGC85312.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
denticola CRIS 18C-A]
Length = 366
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 21/118 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E + ++ + + +P ++ GDFN S + + C
Sbjct: 264 QAEAVARYVRKYLDRKVPVILCGDFNDSPLSYTHRTIVREL---------------TDCY 308
Query: 65 VIKRNKSSLDY--FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V N + Y + + + F + S H P+ +
Sbjct: 309 VASGNGPGISYHKSGMYFRIDHIFCSDDFEPYGAKVDN----SVTASDHYPICCWLKY 362
>gi|323144610|ref|ZP_08079198.1| exodeoxyribonuclease III [Succinatimonas hippei YIT 12066]
gi|322415619|gb|EFY06365.1| exodeoxyribonuclease III [Succinatimonas hippei YIT 12066]
Length = 268
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 29/126 (23%), Gaps = 23/126 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRF 55
QK++ P V+ GDFN N I +
Sbjct: 147 AQKLRESKPIVVCGDFNIAHNEIDLARPKTNVKNTGFLPLERAFLDKFVAAGYIDTFRFV 206
Query: 56 PQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ + + ++ F + + S HCP+
Sbjct: 207 HGDLKDQYTWWSYKTRARAKNVGW--RIDYFFVSEELKENI--KDAWIENDVFGSDHCPI 262
Query: 115 TIEYDF 120
+ F
Sbjct: 263 GLCLSF 268
>gi|295698348|ref|YP_003603003.1| exodeoxyribonuclease III [Candidatus Riesia pediculicola USDA]
gi|291157399|gb|ADD79844.1| exodeoxyribonuclease III [Candidatus Riesia pediculicola USDA]
Length = 267
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 25/136 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDFWQ 44
L K+ +KI ++ GD N +
Sbjct: 131 LIKYVQKKIFENKNIILMGDMNISPEDQDIGIDPYHQNRWINLGKCGFLPEERIWMKKLK 190
Query: 45 KMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ K++ R+ L+ + D S S
Sbjct: 191 SFGLIDTYRKRNFFKKNKFSWFDYRSNGFLNKVGLRIDFILVSKKLFDSCRSSGIDYSIR 250
Query: 104 RRSKLSTHCPLTIEYD 119
+ S H P+ ++
Sbjct: 251 SMKRPSDHAPIWAFFE 266
>gi|240140848|ref|YP_002965328.1| Exodeoxyribonuclease III (Exonuclease III) (EXO III) (AP
endonuclease VI) [Methylobacterium extorquens AM1]
gi|240010825|gb|ACS42051.1| Exodeoxyribonuclease III (Exonuclease III) (EXO III) (AP
endonuclease VI) [Methylobacterium extorquens AM1]
Length = 269
Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 35/134 (26%), Gaps = 25/134 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--------------------QKMDP 48
L+ W +++ P ++ GD N +
Sbjct: 139 LRVWGGRRVSG--PAILVGDLNVAPLEHDVWSHKQLLDVVSHTPVETEALETLRGEAGWI 196
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDTRRS 106
D + P+ ++ R+ + R + + + +
Sbjct: 197 DAARLLTPEPEKIYTWWSYRSPNWEL-ANKGRRLDHTWVSPDLAGTVRRVAVFREARGWE 255
Query: 107 KLSTHCPLTIEYDF 120
K S H P+T+ +
Sbjct: 256 KPSDHVPVTLTLEL 269
>gi|121613613|ref|YP_999970.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
81-176]
gi|121504268|gb|EAQ73304.2| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
81-176]
Length = 259
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLI 53
+ D+ +K G +I GD N I T K+
Sbjct: 136 YLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLKLGFIDTFR 195
Query: 54 RFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E + R K+ F I + S H
Sbjct: 196 EINGEIKEKYSWWSYRMKARERNVGW--RIDYFFISKGLKDKLKNA--FIRDDIFGSDHA 251
Query: 113 PLTIEYD 119
P+ IE D
Sbjct: 252 PVGIEID 258
>gi|307747194|gb|ADN90464.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni M1]
Length = 198
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLI 53
+ D+ +K G +I GD N I T K+
Sbjct: 75 YLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLKLGFIDTFR 134
Query: 54 RFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E + R K+ F I + S H
Sbjct: 135 EINGEIKEKYSWWSYRMKARERNVGW--RIDYFFISKGLKDKLKNA--FIRDDIFGSDHA 190
Query: 113 PLTIEYD 119
P+ IE D
Sbjct: 191 PVGIEID 197
>gi|283955677|ref|ZP_06373170.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
gi|283792902|gb|EFC31678.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
Length = 252
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 30/128 (23%), Gaps = 23/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLL 52
+ D+ +K G +I GD N I T K+
Sbjct: 128 AYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANVNTSGFLPIERAWIDDLLKLGFIDTF 187
Query: 53 IRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E + R K+ D + + S H
Sbjct: 188 REINGEIKEKYSWWSYRMKARERNVGWRIDYFFISKGLKDKLKNAFI----RDDIFGSDH 243
Query: 112 CPLTIEYD 119
P+ IE D
Sbjct: 244 APVGIEID 251
>gi|165932926|ref|YP_001649715.1| exodeoxyribonuclease III [Rickettsia rickettsii str. Iowa]
gi|165908013|gb|ABY72309.1| exodeoxyribonuclease III [Rickettsia rickettsii str. Iowa]
Length = 261
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 12/138 (8%), Positives = 31/138 (22%), Gaps = 23/138 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKM 46
+++W +I GD N + + +
Sbjct: 116 IRLMQEWLTTNRTKNDKMIIVGDLNIAPHEHDVWSSKQLRNVISHTDIERSLLVELQNAL 175
Query: 47 DPDGLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDT 103
F +++ RN R + + ++ +
Sbjct: 176 GFIDSSRHFVSLDEKFYTWWSYRNIDWKK-SNRGRRLDHIWVSDNLKGALFSMHLLSEAR 234
Query: 104 RRSKLSTHCPLTIEYDFE 121
S H P + ++ +
Sbjct: 235 DWFSPSDHVPYFVTFNLQ 252
>gi|233305|gb|AAB19427.1| Rrp1=recombination repair protein 1 [Drosophila, Peptide, 253 aa]
Length = 253
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 22/131 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDP 48
+ + + + + P VI GD N I + +
Sbjct: 126 KLFQAYVKK-LDALKPVVICGDMNVSHMPIDLENPKNNTKNAGFTQEERDKMTELLGLGF 184
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+++ ++ + L+ V +
Sbjct: 185 VDTFRHLYPDRK-GAYTFWTYMANARARNVGWRLDYCLVSE--RFVPKVVEHEIRSQCLG 241
Query: 109 STHCPLTIEYD 119
S HCP+TI ++
Sbjct: 242 SDHCPITIFFN 252
>gi|296135801|ref|YP_003643043.1| exodeoxyribonuclease III Xth [Thiomonas intermedia K12]
gi|295795923|gb|ADG30713.1| exodeoxyribonuclease III Xth [Thiomonas intermedia K12]
Length = 267
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 34/139 (24%), Gaps = 25/139 (17%)
Query: 3 SQQG--EWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------- 49
QQ +L + + + ++ GD N I + +
Sbjct: 130 RQQAKFRFLADFYEHLLALKAAGEVLLCGDVNIAHKEIDLKNWKGNLKNSGFLPEERAWM 189
Query: 50 ----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
+ + + R ++ L + + S
Sbjct: 190 TRLIDEAGYVDVFRQLDPAPDRYTWWSNRGQARAKNVGW--RIDYHLATPGIAAQAKSDS 247
Query: 100 DLDTRRSKLSTHCPLTIEY 118
+ S H PLTI+Y
Sbjct: 248 AWIYTEQRFSDHAPLTIDY 266
>gi|170749328|ref|YP_001755588.1| exodeoxyribonuclease III Xth [Methylobacterium radiotolerans JCM
2831]
gi|170655850|gb|ACB24905.1| exodeoxyribonuclease III Xth [Methylobacterium radiotolerans JCM
2831]
Length = 264
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 33/130 (25%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDG 50
E L+ A ++ I V+AGD+N + F +
Sbjct: 132 ERLRLHARALLEDEIAVVLAGDYNVIPEAADAADPEAWRSDALFLGTTRAAFRAILAEGY 191
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKL 108
+ ++ + L+ +VS K
Sbjct: 192 TDALRACDPRDGLYTFWDYQAGCWQRNAGIRIDHLLLSPQAGDRLVSASVQKHLRGLDKP 251
Query: 109 STHCPLTIEY 118
S H P+T E
Sbjct: 252 SDHVPVTAEL 261
>gi|15890010|ref|NP_355691.1| exodeoxyribonuclease III [Agrobacterium tumefaciens str. C58]
gi|15157983|gb|AAK88476.1| exodeoxyribonuclease III [Agrobacterium tumefaciens str. C58]
Length = 267
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 34/132 (25%), Gaps = 24/132 (18%)
Query: 13 ADQKIKTGIP---FVIAGDFNRKINSIGDT--------------------DDFWQKMDPD 49
G+P ++ GD N D + D
Sbjct: 136 MKALRADGVPGTSSILVGDLNIAPLENDVWSHKQLLKIVSHTPVETEGMLDIMKKGNWLD 195
Query: 50 GLLIRFPQEKESTCNVIKRNKSS-LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + P+ ++ R K D+ D S+ + ++
Sbjct: 196 LMRLNVPETEKIYTWWSYRAKDWEAANRGRRLDHIWSSQDLGSSLEKIEILREARGWNRP 255
Query: 109 STHCPLTIEYDF 120
S H P+T + F
Sbjct: 256 SDHVPVTAHFRF 267
>gi|157828223|ref|YP_001494465.1| exodeoxyribonuclease III [Rickettsia rickettsii str. 'Sheila
Smith']
gi|157800704|gb|ABV75957.1| exodeoxyribonuclease III [Rickettsia rickettsii str. 'Sheila
Smith']
Length = 271
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 12/138 (8%), Positives = 31/138 (22%), Gaps = 23/138 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKM 46
+++W +I GD N + + +
Sbjct: 126 IRLMQEWLTTNRTKNDKMIIVGDLNIAPHEHDVWSSKQLRNVISHTDIERSLLVELQNAL 185
Query: 47 DPDGLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDT 103
F +++ RN R + + ++ +
Sbjct: 186 GFIDSSRHFVSLDEKFYTWWSYRNIDWKK-SNRGRRLDHIWVSDNLKGALFSMHLLSEAR 244
Query: 104 RRSKLSTHCPLTIEYDFE 121
S H P + ++ +
Sbjct: 245 DWFSPSDHVPYFVTFNLQ 262
>gi|302382164|ref|YP_003817987.1| exodeoxyribonuclease III Xth [Brevundimonas subvibrioides ATCC
15264]
gi|302192792|gb|ADL00364.1| exodeoxyribonuclease III Xth [Brevundimonas subvibrioides ATCC
15264]
Length = 264
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 25/127 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFW--------------------QKMDPDGLLIRFP 56
P ++ GDFN + + + D + FP
Sbjct: 138 QDRSRPLLMCGDFNIAPSEFDVWNHRYMSKIVSHTPIEVETLNRLQVAGAFTDVVREAFP 197
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV----SYDQSDLDTRRSKLSTHC 112
+ ++ R + + + S + ++ S HC
Sbjct: 198 EPQKLASWWSYRAEDFRKSAR-GLRLDHIWTSPGLTPAVVAGSATIHEPVRAWTQPSDHC 256
Query: 113 PLTIEYD 119
P+T++ D
Sbjct: 257 PITVDLD 263
>gi|238928084|ref|ZP_04659844.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
gi|238884044|gb|EEQ47682.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
Length = 250
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 12/121 (9%), Positives = 25/121 (20%), Gaps = 23/121 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
++ P V+ GD N I + + + +
Sbjct: 133 LRAKKPVVVCGDLNVAHTEIDLKNPKSNRRNAGFTDEERGKFTELLQAGFIDTFRALYPD 192
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + FL+ S HCP+++
Sbjct: 193 RTGAYTWWSYLRHARETNAGW--RIDYFLVSAELRDRIAAAEIHA--DIFGSDHCPVSLT 248
Query: 118 Y 118
Sbjct: 249 L 249
>gi|313675898|ref|YP_004053894.1| endonuclease/exonuclease/phosphatase [Marivirga tractuosa DSM 4126]
gi|312942596|gb|ADR21786.1| Endonuclease/exonuclease/phosphatase [Marivirga tractuosa DSM 4126]
Length = 272
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 8/104 (7%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+++ ++ GDFN + S +++ + +
Sbjct: 177 ELEHNGKVILMGDFNLEPQSKPIQKIIDSELNDAFEAELNLGPIGT-------YNAFKIG 229
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+R F I SY L + + LS H P+ +E++
Sbjct: 230 ENYERRIDYVFY-QGFKIKSYKNYSLRIQDTFLSDHFPVVVEFE 272
>gi|322378535|ref|ZP_08052983.1| exodeoxyribonuclease [Helicobacter suis HS1]
gi|321149049|gb|EFX43501.1| exodeoxyribonuclease [Helicobacter suis HS1]
Length = 306
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 19/121 (15%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRFPQ-- 57
Q + V+ GD N N I T+ ++++ GL+ F
Sbjct: 182 QNLMQKKAVVVCGDLNVAHNEIDLTNPQSNRYNAGFSDPERDAFRQLLNLGLIDTFRHFY 241
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
++ + I FL + + S QS S HCP+ ++
Sbjct: 242 PTKAESYTWWSYINQARAKNIGWRIDYFLTSQTLN--SCLQSAYIYNHILGSDHCPVGLD 299
Query: 118 Y 118
Sbjct: 300 L 300
>gi|78045838|ref|YP_362013.1| putative extracellular nuclease [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78034268|emb|CAJ21913.1| putative extracellular nuclease [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 572
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 12/126 (9%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L +W D V+ GDFN + + Q
Sbjct: 450 ESAKRLHQWLQTDPTGAQTKLAVLLGDFNAYAMEMPMRSLRASGWQDAFAVAGVKQP--- 506
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPL 114
V LD+ ++ L + ++ D D + S H P+
Sbjct: 507 YSYVYDGLSGRLDHALLSPAMAKQLRGAAEWHINADVMDDAGYAKRNLPGPWRSSDHDPV 566
Query: 115 TIEYDF 120
+ +
Sbjct: 567 LLGFSL 572
>gi|304320984|ref|YP_003854627.1| Exodeoxyribonuclease III [Parvularcula bermudensis HTCC2503]
gi|303299886|gb|ADM09485.1| Exodeoxyribonuclease III [Parvularcula bermudensis HTCC2503]
Length = 273
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 15/136 (11%), Positives = 33/136 (24%), Gaps = 23/136 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDG 50
+ A + + GD+N + G ++++ G
Sbjct: 128 MAAFEDHARDLLAQEEAVCLLGDYNVIPDPSGVYAPDRWTEDALFRLETRKAFRRLLNLG 187
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTR---- 104
+ Q K++ + + L+ + D
Sbjct: 188 YVDALAQVKDAPFYTFWDYQRGAWDKDHGLRIDHCLLSPQAADRLTGGDVDRQVRDPALG 247
Query: 105 --RSKLSTHCPLTIEY 118
+K S H P+ I
Sbjct: 248 NQDAKPSDHVPVWISI 263
>gi|127513098|ref|YP_001094295.1| endonuclease/exonuclease/phosphatase [Shewanella loihica PV-4]
gi|126638393|gb|ABO24036.1| Endonuclease/exonuclease/phosphatase [Shewanella loihica PV-4]
Length = 945
Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 39/139 (28%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ L W + +P ++ GD N + L + +
Sbjct: 654 RAATALGAWLASEYGE-LPTLVIGDMNAYAKEDPID--ALRGAGYLELFDHLGK-SGAYS 709
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDTRRS 106
V LD+ + + + + ++ Y++ S +
Sbjct: 710 YVFSGETGQLDHALANTQLADRVVDVTEWHINTDEPRLLDYNEEFKSAGQIESLYSSDAY 769
Query: 107 KLSTHCPLTIEYDFEKGNV 125
+ S H P+ I E+ +
Sbjct: 770 RSSDHDPVVISLLLERETI 788
>gi|282852873|ref|ZP_06262214.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|282555981|gb|EFB61602.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
Length = 254
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 38/134 (28%), Gaps = 23/134 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ + + + + P +I GD + + I + F + ++
Sbjct: 123 AQTFRNYVTKLM-QYKPVIIGGDMSVAHDKIDLAEPDDNHRHAGFTGIERKEFSELLNAG 181
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ R + D + +++ +
Sbjct: 182 FIDTFRYFHPDEAKYTYWSYREDARAKNIGWRLDYFLVSNNLEDKMINAQILNNIMG--- 238
Query: 108 LSTHCPLTIEYDFE 121
S HCP+ ++ D E
Sbjct: 239 -SDHCPIELDLDIE 251
>gi|209559126|ref|YP_002285598.1| Endonuclease/Exonuclease/phosphatase family protein [Streptococcus
pyogenes NZ131]
gi|209540327|gb|ACI60903.1| Endonuclease/Exonuclease/phosphatase family protein [Streptococcus
pyogenes NZ131]
Length = 910
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--ESTC 63
L ++A + K V+ GDFN + Q ++ ++ + +
Sbjct: 745 ANMLAQFAKEGTKHQANIVMLGDFNDFEFTKTI-----QLIEEGDMVNLVSRHDISDRYS 799
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ R + + S + S H PL ++ F K
Sbjct: 800 YFHQGNNQTLDNILVSRHLLDHYEFDMVH----VNSPFMEAHGRASDHDPLLLQLSFSKE 855
Query: 124 N 124
N
Sbjct: 856 N 856
>gi|56807877|ref|ZP_00365710.1| COG2374: Predicted extracellular nuclease [Streptococcus pyogenes
M49 591]
Length = 846
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 11/121 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--ESTC 63
L ++A + K V+ GDFN + Q ++ ++ + +
Sbjct: 681 ANMLAQFAKEGTKHQANIVMLGDFNDFEFTKTI-----QLIEEGDMVNLVSRHDISDRYS 735
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ R + + S + S H PL ++ F K
Sbjct: 736 YFHQGNNQTLDNILVSRHLLDHYEFDMVH----VNSPFMEAHGRASDHDPLLLQLSFSKE 791
Query: 124 N 124
N
Sbjct: 792 N 792
>gi|325189143|emb|CCA23668.1| conserved hypothetical protein [Albugo laibachii Nc14]
gi|325190841|emb|CCA25329.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 423
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 26/129 (20%), Gaps = 7/129 (5%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE--- 60
Q L + T GDFN + T + P +
Sbjct: 255 QSARLLWHRIESIAGTNAIVFTLGDFNVYRDDAIYTYLTKYEEGPKFHDAWANAASKDGG 314
Query: 61 -STCNVIKRNKSSL---DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S + + D L ++ S H P+
Sbjct: 315 VSYTYHAWQGPAYHLEKDKVEGLYHIDWILSRPYVKVLETKVITECRNGLYPSDHYPVQT 374
Query: 117 EYDFEKGNV 125
+ V
Sbjct: 375 KLVLPASTV 383
>gi|303234331|ref|ZP_07320970.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
gi|302494447|gb|EFL54214.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
Length = 253
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 33/121 (27%), Gaps = 19/121 (15%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRF--PQEK 59
++ P ++ GD N N I + + DG + F
Sbjct: 135 LRDRKPVIVCGDLNVAHNEIDLKNPQSNRRSAGFTDEERNKMSLLLNDGYIDTFRYFYPD 194
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ + F++ + + S HCP+ +E +
Sbjct: 195 KTDEYSYWSYFAKARERNAGWRIDYFIVSDDLKDNL--VDAKIHQSIMGSDHCPVELEIN 252
Query: 120 F 120
F
Sbjct: 253 F 253
>gi|289524110|ref|ZP_06440964.1| exodeoxyribonuclease III [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289502766|gb|EFD23930.1| exodeoxyribonuclease III [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 261
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 12/120 (10%), Positives = 23/120 (19%), Gaps = 19/120 (15%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDGLL 52
+ + K + GD N T ++ +
Sbjct: 133 DLLESEFKADDKIIWVGDMNVAPEEKDVTKPETKRNHVCFHEEIRDIFDTVKSWGFVDVF 192
Query: 53 IRFPQEKESTCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ E+ R + D+ + V K S H
Sbjct: 193 RKHHPEEGQYTFWDYRVKNALERNIGWRVDHILATPSVADRSVDCYIDREPRSWEKPSDH 252
>gi|300774456|ref|ZP_07084319.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
gi|300506271|gb|EFK37406.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
Length = 340
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + ++K D + P ++AGDFN NS + + D K S
Sbjct: 244 QVKRIRKMVD---LSPYPVILAGDFNSVPNSYEYYN-----LGKDLQDAFLVAGKGSAS- 294
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
S DY V S +SY + KLS H P+ E+
Sbjct: 295 ------SFHDYKV-PLRIDYIFSSKSIIPLSYKVD----QSVKLSDHYPVIAEFLLN 340
>gi|254388845|ref|ZP_05004077.1| exodeoxyribonuclease [Streptomyces clavuligerus ATCC 27064]
gi|294813139|ref|ZP_06771782.1| Putative exodeoxyribonuclease [Streptomyces clavuligerus ATCC
27064]
gi|326441562|ref|ZP_08216296.1| exodeoxyribonuclease III [Streptomyces clavuligerus ATCC 27064]
gi|197702564|gb|EDY48376.1| exodeoxyribonuclease [Streptomyces clavuligerus ATCC 27064]
gi|294325738|gb|EFG07381.1| Putative exodeoxyribonuclease [Streptomyces clavuligerus ATCC
27064]
Length = 283
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 18/150 (12%), Positives = 37/150 (24%), Gaps = 38/150 (25%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------- 48
L + + G V+ GD+N + + K +
Sbjct: 134 LSELRARSAAAGREVVVCGDWNIAHHEADLKNWRGNKKNAGFLPEERAWLSRVLDGGDGG 193
Query: 49 ------------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS 90
D + P ++ R ++ + D + +
Sbjct: 194 EGDQGGEGGDSAGYAGYVDVVRALHPDQEGPYTWWSYRGRAFDNDSGWRIDLQAATPSLA 253
Query: 91 FSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V T + S H P+T+ Y+
Sbjct: 254 ARAVKGYVERAATHEERWSDHAPVTVVYEL 283
>gi|332800472|ref|YP_004461971.1| exodeoxyribonuclease III Xth [Tepidanaerobacter sp. Re1]
gi|332698207|gb|AEE92664.1| exodeoxyribonuclease III Xth [Tepidanaerobacter sp. Re1]
Length = 251
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 29/123 (23%), Gaps = 23/123 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ P + GD N I + + +
Sbjct: 132 KLDGIKPVICCGDKNVAHQEIDLKNPKSNRKNAGFTDEERQKMTELLNSGFIDAFRYLYP 191
Query: 58 EKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+K+ + K+ F++ D S HCP+ +
Sbjct: 192 DKKDAYTWWSYMFKAREKNVGW--RIDYFIVSERLKDKIKDVEIHS--HVMGSDHCPVLL 247
Query: 117 EYD 119
+ D
Sbjct: 248 DID 250
>gi|312067871|ref|XP_003136947.1| exodeoxyribonuclease III family protein [Loa loa]
gi|307767891|gb|EFO27125.1| exodeoxyribonuclease III family protein [Loa loa]
Length = 306
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 20/124 (16%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF----------------WQKMDPDGLLIRFPQ- 57
+K+ P V GD N I + + ++ G + F +
Sbjct: 185 KKLDLNKPIVYVGDLNVAHQEIDLANPKTNYNKTAGFTDQERNDFTRLLDAGFVDVFRRL 244
Query: 58 -EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ N + + F++ + L + K S HCPL++
Sbjct: 245 NPEKEGVYTFWSNMRNAREKNVGWRLDYFVVSERIMNKVKECDILCS--VKGSDHCPLSL 302
Query: 117 EYDF 120
+
Sbjct: 303 TIEL 306
>gi|294627485|ref|ZP_06706068.1| extracellular nuclease [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292598116|gb|EFF42270.1| extracellular nuclease [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 572
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 12/126 (9%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L +W D V+ GDFN + + Q
Sbjct: 450 ESAKRLHQWLQTDPTGAQTKLAVLLGDFNAYAMEMPMRSLRASGWQDAFAVAGVKQP--- 506
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPL 114
V LD+ ++ L + ++ D D + S H P+
Sbjct: 507 YSYVYDGLSGRLDHALLSPAMAKQLRGAAEWHINADVMDAAGYAKRNLPGPWRSSDHDPV 566
Query: 115 TIEYDF 120
+ +
Sbjct: 567 LLGFSL 572
>gi|199597303|ref|ZP_03210734.1| Exonuclease III [Lactobacillus rhamnosus HN001]
gi|199591819|gb|EDY99894.1| Exonuclease III [Lactobacillus rhamnosus HN001]
Length = 253
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 40/133 (30%), Gaps = 25/133 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQK 45
+Q +W + + ++ P V GD N I +D F ++
Sbjct: 120 RQ-QWDRDFLAYTNELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQ 178
Query: 46 MDPD--GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
++ F + + + + F+ ++F Y Q
Sbjct: 179 LNSGFIDTFRHFYPDTVTYSWWSYHFHARANNAGW--RIDYFVASSAFQ--PYIQDAKIL 234
Query: 104 RRSKLSTHCPLTI 116
+ S HCP+ +
Sbjct: 235 TQIMGSDHCPVEL 247
>gi|114571487|ref|YP_758167.1| exodeoxyribonuclease III [Maricaulis maris MCS10]
gi|114341949|gb|ABI67229.1| exodeoxyribonuclease III [Maricaulis maris MCS10]
Length = 270
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 33/139 (23%), Gaps = 28/139 (20%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--------------------QKM 46
+ ++++ + V+ GDFN
Sbjct: 131 DRIERYFAGRASENAALVLVGDFNIAPYEHDVWSHKQLLKVVSHTPVEVEALERIRQAGQ 190
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS-------IVSYDQS 99
D P +++ R K R + + ++
Sbjct: 191 FSDVARELIPMDEKIYTWWSYRAKDW-RAANRGRRLDHIWASPAARDRALAGGRDAFRIW 249
Query: 100 DLDTRRSKLSTHCPLTIEY 118
+ + R K S H P+ +
Sbjct: 250 EDERSREKPSDHAPVALTL 268
>gi|224418520|ref|ZP_03656526.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|253826925|ref|ZP_04869810.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313142047|ref|ZP_07804240.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|253510331|gb|EES88990.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313131078|gb|EFR48695.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
Length = 252
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 13/129 (10%), Positives = 31/129 (24%), Gaps = 24/129 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ P ++ GD N I + + +
Sbjct: 127 RAYLK-NLEKTKPVIVCGDLNVAHQEIDLKNPKTNRRNAGFTDEEREKMTQLLDSGFTDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + K+ + D ++ S
Sbjct: 186 FRHFYPTLEGAYSWWSYMGKARENNTGWRIDYFLCSKALDSKLLDAKI----YPEVFGSD 241
Query: 111 HCPLTIEYD 119
HCP+ +E +
Sbjct: 242 HCPVGLEIN 250
>gi|294667784|ref|ZP_06732994.1| extracellular nuclease [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292602410|gb|EFF45851.1| extracellular nuclease [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 572
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 12/126 (9%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L +W D V+ GDFN + + Q
Sbjct: 450 ESAKRLHQWLQTDPTGAQTKLAVLLGDFNAYAMEMPMRSLRASGWQDAFAVAGVKQP--- 506
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPL 114
V LD+ ++ L + ++ D D + S H P+
Sbjct: 507 YSYVYDGLSGRLDHALLSPAMAKQLRGAAEWHINADVMDAAGYAKRNLPGPWRSSDHDPV 566
Query: 115 TIEYDF 120
+ +
Sbjct: 567 LLGFSL 572
>gi|187927152|ref|YP_001897639.1| exodeoxyribonuclease III Xth [Ralstonia pickettii 12J]
gi|241661660|ref|YP_002980020.1| exodeoxyribonuclease III Xth [Ralstonia pickettii 12D]
gi|309780146|ref|ZP_07674897.1| exodeoxyribonuclease III [Ralstonia sp. 5_7_47FAA]
gi|187724042|gb|ACD25207.1| exodeoxyribonuclease III Xth [Ralstonia pickettii 12J]
gi|240863687|gb|ACS61348.1| exodeoxyribonuclease III Xth [Ralstonia pickettii 12D]
gi|308920849|gb|EFP66495.1| exodeoxyribonuclease III [Ralstonia sp. 5_7_47FAA]
Length = 261
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 29/142 (20%)
Query: 3 SQQGEW------LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D + + G V+ GD N I +
Sbjct: 119 RQQAKFRFMDLFMEHLKDLRHEKGREVVLCGDVNIVHKEIDIKNWKGNQKNSGCLPEERA 178
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + Q E R ++ + + +
Sbjct: 179 WLTKLFDEVGYVDVFRTLDQRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGIAATARR 236
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
S + K S H PLTI+YD
Sbjct: 237 ASIF--KDIKFSDHAPLTIDYD 256
>gi|187479651|ref|YP_787676.1| catabolite repression control protein [Bordetella avium 197N]
gi|115424238|emb|CAJ50791.1| catabolite repression control protein [Bordetella avium 197N]
Length = 260
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 21/130 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGL 51
+ I G VI GD+N + + ++ +
Sbjct: 132 RHLADLIGRGREVVICGDWNIAHKEADLKNWKGNLKNSGFLPEERAWLTQVFDELKWVDV 191
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
R + N+ + + + + + + + + S H
Sbjct: 192 YRRLAPDATGEGYTWWSNRGQAWAKNVGWRIDYHIASGALAATAQQAAIY--KDVRFSDH 249
Query: 112 CPLTIEYDFE 121
PLTI+YDF
Sbjct: 250 APLTIDYDFS 259
>gi|86153870|ref|ZP_01072073.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|85842831|gb|EAQ60043.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
HB93-13]
Length = 252
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLI 53
+ D+ +K G +I GD N I T K+
Sbjct: 129 YLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLKLGFIDTFR 188
Query: 54 RFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E + R K+ F I + S H
Sbjct: 189 EINGEIKEKYSWWSYRMKARERNVGW--RIDYFFISKGLKDKLKNA--FIRDDIFGSDHA 244
Query: 113 PLTIEYD 119
P+ IE D
Sbjct: 245 PVGIEID 251
>gi|315128102|ref|YP_004070105.1| hypothetical protein PSM_A3040 [Pseudoalteromonas sp. SM9913]
gi|315016615|gb|ADT69953.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
Length = 887
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 12/133 (9%), Positives = 30/133 (22%), Gaps = 21/133 (15%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
W + K ++ GD N + + ++
Sbjct: 643 ANAFADWLNSKPTGVDDEDIILVGDMNAYAMEDPIRAFADKGL--KNVVAELDGNTLGYS 700
Query: 64 NVIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQS---------DLDTRRS 106
SLD+ ++ + + + Y+
Sbjct: 701 YSFSGRAGSLDHALVSPSLLNKVVSATDWHINADEPISLDYNVEFKSDAQQSTLYAQGPY 760
Query: 107 KLSTHCPLTIEYD 119
+ S H P+ ++
Sbjct: 761 RASDHDPVIVDIR 773
>gi|126657241|ref|ZP_01728407.1| hypothetical protein CY0110_24971 [Cyanothece sp. CCY0110]
gi|126621512|gb|EAZ92223.1| hypothetical protein CY0110_24971 [Cyanothece sp. CCY0110]
Length = 652
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 33/122 (27%), Gaps = 8/122 (6%)
Query: 3 SQQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + + + ++AGD N I+S + +
Sbjct: 296 EKQATAVGNFVKTLLSEDDKANVIVAGDLNDVIDSEPIAILEASGLTNLSE---LLPPSD 352
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N LDY ++ + + LS H P+ ++
Sbjct: 353 RYTYEFRNNLQQLDYILVSDNLFTTGKS---QFDIVHVNVNQPSNLALSDHDPVLAQFTL 409
Query: 121 EK 122
K
Sbjct: 410 PK 411
>gi|260550183|ref|ZP_05824396.1| catabolite repression control protein [Acinetobacter sp. RUH2624]
gi|260406711|gb|EEX00191.1| catabolite repression control protein [Acinetobacter sp. RUH2624]
Length = 280
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 36/139 (25%), Gaps = 27/139 (19%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------F 42
L + + LK+W D+ +I GD+N I +
Sbjct: 149 LGEYAKILKQWRDE----NKSIIICGDYNIVHKRIDIKNWSGNQKSSGCLPHERAWLDHI 204
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ ++ E E R ++ + +
Sbjct: 205 YDELGYVDTFRVVRTEAELYSWWSNRGQARAKNVGW--RIDYQACSPDWKA--RTVNAWV 260
Query: 103 TRRSKLSTHCPLTIEYDFE 121
+ S H P+ I+Y +
Sbjct: 261 YKDQWFSDHAPVIIDYKIQ 279
>gi|224372849|ref|YP_002607221.1| exodeoxyribonuclease III [Nautilia profundicola AmH]
gi|223588651|gb|ACM92387.1| exodeoxyribonuclease III [Nautilia profundicola AmH]
Length = 250
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 32/130 (24%), Gaps = 20/130 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLL 52
L ++ + + V+ GD N + + D ++ +
Sbjct: 121 LFEFLSRFDLSKDKVVLCGDMNVAYSDLDVWDPEIWEGEVTFLPEEKAMINNILNMGFVD 180
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN----SFSIVSYDQSDLDTRRSKL 108
+ K + + Y + V S R+
Sbjct: 181 VIREFNKNERVYTFYDYRGAKVYKNEGMRLDYVFLSPTLAKEVKNVEILTSVRRKRKPTP 240
Query: 109 STHCPLTIEY 118
S H P+ +E
Sbjct: 241 SDHVPIIVEL 250
>gi|149914379|ref|ZP_01902910.1| endonuclease/exonuclease/phosphatase family protein [Roseobacter
sp. AzwK-3b]
gi|149811898|gb|EDM71731.1| endonuclease/exonuclease/phosphatase family protein [Roseobacter
sp. AzwK-3b]
Length = 343
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 40/144 (27%), Gaps = 28/144 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-----------------------DD 41
Q WL+ ++ + G ++ GD N D
Sbjct: 200 QAVWLRHRIEEHLAQGETLIVLGDLNDGPGLDEYEHLFGRSSVEIVMGEGGDAAAQLFDP 259
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSY 96
++ + + + ++ LDY ++ D + + +
Sbjct: 260 HARRALTRRIGAMIATARFYLPTEKRYLQALLDYIMVSSDLEARQPRWRIWHPFDDPGCF 319
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
+L S H P+T++ D
Sbjct: 320 RIPELREALLAASDHFPVTMDVDL 343
>gi|166714173|ref|ZP_02245380.1| nuclease [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 572
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 33/126 (26%), Gaps = 12/126 (9%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L +W D V+ GDFN + + Q
Sbjct: 450 ESAKRLHQWLQTDPTGAQTKRAVLLGDFNAYAMEMPMRSLRASGWQDAFAVAGVKQP--- 506
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPL 114
V LD+ ++ L ++ D D + S H P+
Sbjct: 507 YSFVYDGMSGRLDHALLSPAMAKQLRGAVEWHINADVMDAAGYAKRNLPGPWRSSDHDPV 566
Query: 115 TIEYDF 120
+ +
Sbjct: 567 LLGFSL 572
>gi|290963099|ref|YP_003494281.1| hypothetical protein SCAB_88221 [Streptomyces scabiei 87.22]
gi|260652625|emb|CBG75758.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 332
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 37/131 (28%), Gaps = 14/131 (10%)
Query: 5 QGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDG---------LLI 53
Q +++ DQ V+AGDFN + + D + +
Sbjct: 202 QALEVRRLVDQILHDDPDARIVVAGDFNAEPEEVPVLAICGNVEDTNNGELATRVLVPIE 261
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR---RSKLST 110
+ +D+ ++ R+ + + + S
Sbjct: 262 HTIPNEARYTLFHHGRGQMIDHMLVTRNLLAHYRGSEIHNEILHDDSIAFATDVKYPESD 321
Query: 111 HCPLTIEYDFE 121
H P+ +DF+
Sbjct: 322 HAPVVATFDFD 332
>gi|225620509|ref|YP_002721766.1| exodeoxyribonuclease [Brachyspira hyodysenteriae WA1]
gi|225215328|gb|ACN84062.1| exodeoxyribonuclease [Brachyspira hyodysenteriae WA1]
Length = 261
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 32/122 (26%), Gaps = 22/122 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGLLIRFPQ 57
K+K ++ GD N +I + F +
Sbjct: 142 KLKKNTNVILCGDMNIAHEAIDLARPKENEKSIGFLPEEREKITEFLNKGFTDTFRMFVK 201
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E + +S D + + +I D S HCP+ IE
Sbjct: 202 EGGHYSWWDMKTRSREKNVGWRIDYFFVNNEMAPNIKRADILT----DVMGSDHCPILIE 257
Query: 118 YD 119
+D
Sbjct: 258 WD 259
>gi|313156920|gb|EFR56358.1| putative lipoprotein [Alistipes sp. HGB5]
Length = 673
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 8/117 (6%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ L + GIP ++ GD N ++ D + + E +
Sbjct: 200 AKLLIEREKMYNPDGIPSILVGDMNAAMD-----DASSKTLRTHWNDSFLTVESDFVSGP 254
Query: 66 IKRNKSSL---DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + SY + S HCPLTI++D
Sbjct: 255 VGTFNGHKITADLTQATARIDYIYSRGDVELKSYKVDNTVYGNIYPSDHCPLTIQFD 311
>gi|149184981|ref|ZP_01863298.1| exonuclease III [Erythrobacter sp. SD-21]
gi|148831092|gb|EDL49526.1| exonuclease III [Erythrobacter sp. SD-21]
Length = 263
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 35/135 (25%), Gaps = 26/135 (19%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDG 50
E + +WAD P +I GDFN + + MD G
Sbjct: 132 ERMTRWADAV---DRPTLIVGDFNIAPLESDVWNHKQLLKVVSHTPIEVESLQRFMDAHG 188
Query: 51 LLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTR 104
+ ++ R K R + + +
Sbjct: 189 WADIGREHIKAPERYYSWWSYRAKDWKAN-DRGRRLDHMWASPELAKQASGHSVHEYARD 247
Query: 105 RSKLSTHCPLTIEYD 119
K S H PL E+D
Sbjct: 248 WEKPSDHVPLVTEFD 262
>gi|114769839|ref|ZP_01447449.1| exodeoxyribonuclease III, putative [alpha proteobacterium HTCC2255]
gi|114549544|gb|EAU52426.1| exodeoxyribonuclease III, putative [alpha proteobacterium HTCC2255]
Length = 262
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 26/118 (22%), Gaps = 22/118 (18%)
Query: 24 VIAGDFNRKINSIGDTD----------------DFWQKMDPDGLLIRFPQEKES---TCN 64
++ GD N D + M + ++ S
Sbjct: 146 ILVGDLNIAPGEEDVWDHKKLLKIVSHTPQEIQALNEVMLSANWVDIIRKDIPSGLLYSW 205
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--QSDLDTRRSKLSTHCPLTIEYDF 120
R D R + + Y S K S H P+ +D
Sbjct: 206 WSYR-ARDWDTANKGRRLDHIWATKDIADKGYGSYISRDVRGWEKPSDHAPIFSSFDL 262
>gi|303241137|ref|ZP_07327646.1| exodeoxyribonuclease III Xth [Acetivibrio cellulolyticus CD2]
gi|302591397|gb|EFL61136.1| exodeoxyribonuclease III Xth [Acetivibrio cellulolyticus CD2]
Length = 251
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 29/122 (23%), Gaps = 23/122 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
++ P ++ GD N I + K + F +
Sbjct: 134 LERYKPVIVCGDLNVAHKEIDLKNPQSNKKNAGFTEEERSKFDSYVNNGFIDTFRYFYPD 193
Query: 59 K-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ S + F++ + L S HCP+ I
Sbjct: 194 RIGVYTWWSYMFNSRQNNAGW--RIDYFIVSERIK--DRLKDALVYSEITGSDHCPVGIL 249
Query: 118 YD 119
D
Sbjct: 250 LD 251
>gi|258512235|ref|YP_003185669.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478961|gb|ACV59280.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 252
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 23/123 (18%), Gaps = 23/123 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
+ P + GD N I + + +
Sbjct: 134 LDREKPVIACGDLNVAHEEIDIKNAKSNRGNSGFTDEERAKMTELLAAGFVDTFRALHPN 193
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ D I+ D S HCP+ +E
Sbjct: 194 VTDKYTWWSNMPGVRERNIGWRIDYFLVSERLRDRILDARIDDHVLG----SDHCPVVLE 249
Query: 118 YDF 120
D
Sbjct: 250 VDL 252
>gi|315057682|gb|ADT72011.1| Exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni S3]
Length = 252
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLI 53
+ D+ +K G +I GD N I T K+
Sbjct: 129 YLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLKLGFIDTFR 188
Query: 54 RFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E + R K+ D + + S H
Sbjct: 189 EINGEIKEKYSWWSYRMKARERNVGWRIDYFFISKGLKDKLKNAFI----RDDIFGSDHA 244
Query: 113 PLTIEYD 119
P+ IE D
Sbjct: 245 PVGIEID 251
>gi|255692701|ref|ZP_05416376.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
finegoldii DSM 17565]
gi|260621535|gb|EEX44406.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
finegoldii DSM 17565]
Length = 317
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 38/144 (26%), Gaps = 30/144 (20%)
Query: 4 QQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ +++ + K +P ++ GDFN + + D + +
Sbjct: 175 ESAYLVQEKMKELGKGKNLPAILTGDFNVDQTHQSYNAFVEKGVLCDSYEKCDFRYATNG 234
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY------------------------DQ 98
S + + +F + Y +
Sbjct: 235 T-----FNSFDPNSFTKSRIDHVFVSPAFHVKRYGILTDTYRSIVGNGEKENANDCPEEI 289
Query: 99 SDLDTRRSKLSTHCPLTIEYDFEK 122
+ S H P+ +E +F++
Sbjct: 290 DIKAYQARTPSDHFPVKVELEFDE 313
>gi|148654820|ref|YP_001275025.1| endonuclease/exonuclease/phosphatase [Roseiflexus sp. RS-1]
gi|148566930|gb|ABQ89075.1| Endonuclease/exonuclease/phosphatase [Roseiflexus sp. RS-1]
Length = 348
Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 24/116 (20%), Gaps = 10/116 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E + + + P V+AGD N +
Sbjct: 237 ERQAEAINAFVQAQRT---PVVVAGDMNATPFHRAYHILEHGALSDVWRE---CGSGAGF 290
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + + N + D +S H +
Sbjct: 291 TWPGNRTIGGVPVLPWFVRIDHLFTTNGIVCLDASVGPWD----GVSDHRAVVATL 342
>gi|307728165|ref|YP_003905389.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1003]
gi|307582700|gb|ADN56098.1| exodeoxyribonuclease III Xth [Burkholderia sp. CCGE1003]
Length = 259
Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 39/142 (27%), Gaps = 31/142 (21%)
Query: 3 SQQGEWLKKWADQK------IKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ + ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAGLAREREVIVCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + Q E R ++ + + +
Sbjct: 177 WLTKLFDEVGYVDVFRTLDQRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGIAGKAKR 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
R K S H PLT++YD
Sbjct: 235 TEVF--RDIKFSDHAPLTVDYD 254
>gi|238650485|ref|YP_002916337.1| exodeoxyribonuclease III [Rickettsia peacockii str. Rustic]
gi|238624583|gb|ACR47289.1| exodeoxyribonuclease III [Rickettsia peacockii str. Rustic]
Length = 271
Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 12/138 (8%), Positives = 31/138 (22%), Gaps = 23/138 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKM 46
+++W +I GD N + + +
Sbjct: 126 VRLMQEWLTTNRTKNDKMIIVGDLNIAPHEHDVWSSKQLRNVISHTDIERSLLVELQNAL 185
Query: 47 DPDGLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDT 103
F +++ RN R + + ++ +
Sbjct: 186 GFIDSSRHFVSLDEKFYTWWSYRNIDWKK-SNRGRRLDHIWVSDNLKGALFSMHLLSEAR 244
Query: 104 RRSKLSTHCPLTIEYDFE 121
S H P + ++ +
Sbjct: 245 DWFSPSDHVPYFVTFNLQ 262
>gi|300859239|ref|YP_003784222.1| exodeoxyribonuclease III [Corynebacterium pseudotuberculosis FRC41]
gi|300686693|gb|ADK29615.1| exodeoxyribonuclease III [Corynebacterium pseudotuberculosis FRC41]
gi|302206930|gb|ADL11272.1| Putative exodeoxyribonuclease III [Corynebacterium
pseudotuberculosis C231]
gi|302331494|gb|ADL21688.1| Putative exodeoxyribonuclease III [Corynebacterium
pseudotuberculosis 1002]
gi|308277184|gb|ADO27083.1| Putative exodeoxyribonuclease III [Corynebacterium
pseudotuberculosis I19]
Length = 255
Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 26/125 (20%), Gaps = 11/125 (8%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-----------QKMDPDGLLIRF 55
WL P V GDFN D + ++
Sbjct: 131 RWLFALQLHAQDVTEPTVFLGDFNIAPRDQDVWDMSFFEGKTHVTEPERQAFEALTTSGL 190
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
++ L ++ + + S H P+
Sbjct: 191 HIASPLEGYSYWDYQAGRFLKNQGMLIDFQLATTDLTVENSFIDVDERSGKAASDHAPVI 250
Query: 116 IEYDF 120
++Y
Sbjct: 251 VDYIL 255
>gi|238854034|ref|ZP_04644388.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
gi|238833354|gb|EEQ25637.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
Length = 254
Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 36/136 (26%), Gaps = 23/136 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD 49
+ + + + + P +I GD + I + F + ++
Sbjct: 123 AQTFRNYVTKLM-QYKPVIIGGDMSVAHEKIDLAEPDDNHRHAGFTGIERKEFSELLNAG 181
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ R + D + + +
Sbjct: 182 FIDTFRYFHPDEAKYTYWSYREDARAKNIGWRLDYFLASHNLEDKM----INTKILNNIM 237
Query: 108 LSTHCPLTIEYDFEKG 123
S HCP+ ++ D E G
Sbjct: 238 GSDHCPIELDLDIETG 253
>gi|86156859|ref|YP_463644.1| exodeoxyribonuclease III [Anaeromyxobacter dehalogenans 2CP-C]
gi|85773370|gb|ABC80207.1| exodeoxyribonuclease III [Anaeromyxobacter dehalogenans 2CP-C]
Length = 262
Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 34/134 (25%), Gaps = 23/134 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDP 48
+ E ++++A +G P V+ GD N + ++++
Sbjct: 118 RFLEAMERFAADAQASGRPLVLCGDLNVARTDMDVHPKERKAGAIGQLPEERALFERILA 177
Query: 49 DGLLI----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
GL+ P + D + S
Sbjct: 178 HGLVDVGRALDPANEGLFTWWAPWRNLRQRNIGWRIDYVLASAPLAASATRCRV----LA 233
Query: 105 RSKLSTHCPLTIEY 118
S H P+ E+
Sbjct: 234 DFGTSDHAPVVAEF 247
>gi|325925887|ref|ZP_08187256.1| putative extracellular nuclease [Xanthomonas perforans 91-118]
gi|325543718|gb|EGD15132.1| putative extracellular nuclease [Xanthomonas perforans 91-118]
Length = 572
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 12/126 (9%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L +W D V+ GDFN + + Q
Sbjct: 450 ESAKRLHQWLQTDPTGAQTKLAVLLGDFNAYAMEMPMRSLRASGWQDAFAVAGVKQP--- 506
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPL 114
V LD+ ++ L + ++ D D + S H P+
Sbjct: 507 YSYVYDGLSGRLDHALLSPAMAKQLRGAAEWHINADVMDDAGYAKRNLPGPWRSSDHDPV 566
Query: 115 TIEYDF 120
+ +
Sbjct: 567 LLAFSL 572
>gi|329930518|ref|ZP_08284058.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
gi|328934896|gb|EGG31386.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
Length = 250
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 30/132 (22%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + Q + P ++ GD N I + +
Sbjct: 124 ERFRTYLLQ-LDERKPVIVCGDLNVAHQEIDLKNAKSNHGNSGFTLEERGKMTDLLAAGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ K D + + +
Sbjct: 183 IDSFRHFYPDRTDVYSWWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAEIDCHVLG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+++ +
Sbjct: 240 -SDHCPVSLTLE 250
>gi|323699266|ref|ZP_08111178.1| exodeoxyribonuclease III [Desulfovibrio sp. ND132]
gi|323459198|gb|EGB15063.1| exodeoxyribonuclease III [Desulfovibrio desulfuricans ND132]
Length = 255
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 26/124 (20%), Gaps = 22/124 (17%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRF 55
Q ++ P V+ GDFN I + F
Sbjct: 135 AQALRRTKPIVVGGDFNTAHREIDLKNPKANSERSGFLPVERAWIDKFIEHGYVDTFRLF 194
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
R + + F + S HCP+
Sbjct: 195 EDGPHHYSWWSYRFNARKNNAGW--RIDYFFVSEELKDK--VVRAWIEPDVLGSDHCPIG 250
Query: 116 IEYD 119
+E D
Sbjct: 251 VEID 254
>gi|302039598|ref|YP_003799920.1| exodeoxyribonuclease III [Candidatus Nitrospira defluvii]
gi|300607662|emb|CBK43995.1| Exodeoxyribonuclease III [Candidatus Nitrospira defluvii]
Length = 257
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 31/132 (23%), Gaps = 19/132 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
+ L+K + + P + GD N I
Sbjct: 125 DRLRKHFETHLSPKEPAIWCGDMNVAPRPIDVHSPEKHLKHVCYHEDARNAYGKTVAWGF 184
Query: 49 DGLLIRFPQEKESTCNVIKRNK-SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + R +++ R + D+ + D R +
Sbjct: 185 EDVFCRLYPDRQQFTFFDYRAPSALAANKGWRIDHILATPPLAQRCRRVDVDLEPRRATD 244
Query: 108 LSTHCPLTIEYD 119
S H L E+
Sbjct: 245 PSDHTVLWAEFS 256
>gi|255320035|ref|ZP_05361231.1| exodeoxyribonuclease III [Acinetobacter radioresistens SK82]
gi|262380541|ref|ZP_06073695.1| exodeoxyribonuclease III [Acinetobacter radioresistens SH164]
gi|255302903|gb|EET82124.1| exodeoxyribonuclease III [Acinetobacter radioresistens SK82]
gi|262297987|gb|EEY85902.1| exodeoxyribonuclease III [Acinetobacter radioresistens SH164]
Length = 273
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 29/128 (22%), Gaps = 23/128 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLI 53
Q + G +I GD+N I + + ++
Sbjct: 150 LKQWREEGKSIIICGDYNIVHKRIDIKNWSGNQKSSGCLPHERAWLDHIYDELGYVDTFR 209
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
E E R ++ + + + S H P
Sbjct: 210 EVRPEAELYSWWSNRGQARAKNVGW--RIDYQACSPDWKN--RTVNAWVYKEQWFSDHAP 265
Query: 114 LTIEYDFE 121
+ I+Y
Sbjct: 266 VIIDYKIN 273
>gi|34580716|ref|ZP_00142196.1| exodeoxyribonuclease III [Rickettsia sibirica 246]
gi|28262101|gb|EAA25605.1| exodeoxyribonuclease III [Rickettsia sibirica 246]
Length = 271
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 33/138 (23%), Gaps = 23/138 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKM 46
+++W +I GD N + + +
Sbjct: 126 VRLMQEWLTTNRTKNDKMIIVGDLNIAPHEHDVWSSKQLRNVISHTDIERSLLVELQNAL 185
Query: 47 DPDGLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDT 103
F +++ RN R + + ++ VS
Sbjct: 186 GFIDSSRHFVSLDEKFYTWWSYRNIDWKK-SNRGRRLDHIWVSDNLKGALVSMHLLSEAR 244
Query: 104 RRSKLSTHCPLTIEYDFE 121
S S H P + ++ +
Sbjct: 245 DWSSPSDHVPYFVTFNLQ 262
>gi|119471476|ref|ZP_01613917.1| hypothetical protein ATW7_16665 [Alteromonadales bacterium TW-7]
gi|119445575|gb|EAW26860.1| hypothetical protein ATW7_16665 [Alteromonadales bacterium TW-7]
Length = 910
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 31/132 (23%), Gaps = 21/132 (15%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
W D K ++ GD N + + ++ +
Sbjct: 644 ASAFADWLDSKPTGVDDEDIILVGDMNAYAMEDPIR--KFDEKGYKNVVAELDGNTLAYS 701
Query: 64 NVIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQS---------DLDTRRS 106
SLD+ V + + ++ Y+
Sbjct: 702 YSFSGRAGSLDHAVATESLLSKVVAAKDWHINADEPIVLDYNVEFKSEGHQSTLYSESAY 761
Query: 107 KLSTHCPLTIEY 118
+ S H P+ ++
Sbjct: 762 RASDHDPVIVDI 773
>gi|4106095|gb|AAD02702.1| apurinic/apyrimidinic endonuclease [Cricetulus griseus]
Length = 317
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 26/124 (20%), Gaps = 24/124 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLIRFPQ 57
+ + P V+ GD N I + Q +
Sbjct: 198 LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLTDSFRHLYP 257
Query: 58 EKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + D S+ ++ S HCP+T+
Sbjct: 258 NTPYAYTFWTYMMNARAKNVGWRLDYFLLSHSLLSSLCDSKI----RSKALGSDHCPITL 313
Query: 117 EYDF 120
Sbjct: 314 YLAL 317
>gi|86149633|ref|ZP_01067863.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88597280|ref|ZP_01100515.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
gi|218561918|ref|YP_002343697.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni NCTC
11168]
gi|85839901|gb|EAQ57160.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|88190341|gb|EAQ94315.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
gi|112359624|emb|CAL34409.1| exodeoxyribonuclease [Campylobacter jejuni subsp. jejuni NCTC
11168]
gi|284925531|gb|ADC27883.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315927175|gb|EFV06525.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315928582|gb|EFV07877.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 305]
Length = 252
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLI 53
+ D+ +K G +I GD N I T K+
Sbjct: 129 YLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLKLGFIDTFR 188
Query: 54 RFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E + R K+ D + + S H
Sbjct: 189 EINGEIKEKYSWWSYRMKARERNVGWRIDYFFISKGLKDKLKNAFI----RDDIFGSDHA 244
Query: 113 PLTIEYD 119
P+ IE D
Sbjct: 245 PVGIEID 251
>gi|294676364|ref|YP_003576979.1| endonuclease/exonuclease/phosphatase family protein [Rhodobacter
capsulatus SB 1003]
gi|294475184|gb|ADE84572.1| endonuclease/exonuclease/phosphatase family protein [Rhodobacter
capsulatus SB 1003]
Length = 342
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 39/149 (26%), Gaps = 37/149 (24%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-----------------------TDD 41
Q WL++ D+ + G ++ GDFN D
Sbjct: 198 QCLWLRRRVDEVLDAGESLIVLGDFNDGPGLDEYEALFGRSGLEIVLGTGGPPARQLHDP 257
Query: 42 FWQKMD-----PDGLLIRFPQEKESTCNVIKRNKSSLDYF-----VIDRDNKNFLIDNSF 91
+ F E + LDY + K +
Sbjct: 258 HARLPRGKTTALPASARFFIPEPPPGQF----FSAMLDYIALSPDLCAHAPKWRIWHPFD 313
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
Y ++L + S H P++++ F
Sbjct: 314 DPGCYRVAELREALLQASDHFPVSVDLAF 342
>gi|254450397|ref|ZP_05063834.1| exodeoxyribonuclease III [Octadecabacter antarcticus 238]
gi|198264803|gb|EDY89073.1| exodeoxyribonuclease III [Octadecabacter antarcticus 238]
Length = 262
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 24/133 (18%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ + ++ GD N D D D
Sbjct: 133 MRDYFGANAPEKS--ILVGDLNIAPREDDVWDHKKLLKVVSHTPVEVEHLADVQGAGDWV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ R R + + S +
Sbjct: 191 DVTRADIPHGNLYSWWSYRAPDWES-ADKGRRLDHVWATPDIANSAHSSRVIRAVRGWEQ 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFATFDL 262
>gi|289664940|ref|ZP_06486521.1| nuclease [Xanthomonas campestris pv. vasculorum NCPPB702]
Length = 572
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 12/126 (9%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L +W D V+ GDFN + + Q
Sbjct: 450 ESAKRLHQWLQTDPTGAQTKLAVLLGDFNAYAMEMPMRSLRASGWQDAFAVAGVKQP--- 506
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPL 114
V LD+ ++ L + ++ D D + S H P+
Sbjct: 507 YSFVYDGMSGRLDHALLSPAMAKQLRGAAEWHINADVMDAAGYAKRNLPGPWRSSDHDPV 566
Query: 115 TIEYDF 120
+ +
Sbjct: 567 LLGFSL 572
>gi|226355795|ref|YP_002785535.1| extracellular nuclease [Deinococcus deserti VCD115]
gi|226317785|gb|ACO45781.1| putative extracellular nuclease,
Endonuclease/Exonuclease/phosphatase family [Deinococcus
deserti VCD115]
Length = 865
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 13/141 (9%), Positives = 34/141 (24%), Gaps = 27/141 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L ++A + ++ GD N + L + ++
Sbjct: 448 QAKALLEFAGRLKAVDPDVLLMGDLNAYGEEDPIKTIEAAGFES---LNKRIPAEDRYSY 504
Query: 65 VIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ----------------SD 100
LD+ + + + ++ Y+
Sbjct: 505 QFNGEFGYLDHALSSSTLSAQVTGITEWHINSDEPVVLDYNIEFKKHPECTATNCTSPDL 564
Query: 101 LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ + +
Sbjct: 565 YAPTPYRSSDHDPVLVGLTLK 585
>gi|294643627|ref|ZP_06721429.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CC 2a]
gi|294808046|ref|ZP_06766819.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
xylanisolvens SD CC 1b]
gi|292641004|gb|EFF59220.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CC 2a]
gi|294444687|gb|EFG13381.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
xylanisolvens SD CC 1b]
Length = 296
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 29/118 (24%), Gaps = 13/118 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
ML +Q KI G P GDFN + + +
Sbjct: 187 MLLEQVR--------KIAKGRPTFCTGDFNATPDEEPIQL-LLKDSLLLDSYKCTLTPPK 237
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIE 117
+ + + I+SY D S H P+ +E
Sbjct: 238 GPSGSFY---AYDKTGKTAKRIDFIFVTPKIKILSYHTIDDDIKYNKYSSDHFPVMVE 292
>gi|254439233|ref|ZP_05052727.1| exodeoxyribonuclease III (xth) subfamily [Octadecabacter
antarcticus 307]
gi|198254679|gb|EDY78993.1| exodeoxyribonuclease III (xth) subfamily [Octadecabacter
antarcticus 307]
Length = 262
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 26/133 (19%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ + ++ GD N D D D
Sbjct: 133 MRDYFRANAPEKS--ILVGDLNIAPREDDVWDHKKLLKVVSHTTVEVEHLADVQGAGDWV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ + R D R + + S +
Sbjct: 191 DVTRADIPDGNLYSWWSYRAPDW-DTADKGRRLDHIWATPDIANSAHSSRVIRAVRGWEQ 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVFAMFDL 262
>gi|260903873|ref|ZP_05912195.1| hypothetical protein BlinB_00970 [Brevibacterium linens BL2]
Length = 255
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 30/107 (28%), Gaps = 7/107 (6%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
AD + P V+ GDFN S + F ++ P E R K
Sbjct: 153 ADHLAEAAGPCVVTGDFNVATGS-PVYNYFCTELGLTDTGAAVPGE---NIGTFHRYKGP 208
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
D D L + VS + S H P+
Sbjct: 209 KDG---DPRIDWILTTSDLQTVSTRINTFSAGGEYPSDHFPVEAVLR 252
>gi|167004926|ref|ZP_02270684.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
81-176]
Length = 252
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLI 53
+ D+ +K G +I GD N I T K+
Sbjct: 129 YLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLKLGFIDTFR 188
Query: 54 RFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E + R K+ D + + S H
Sbjct: 189 EINGEIKEKYSWWSYRMKARERNVGWRIDYFFISKGLKDKLKNAFI----RDDIFGSDHA 244
Query: 113 PLTIEYD 119
P+ IE D
Sbjct: 245 PVGIEID 251
>gi|293371502|ref|ZP_06617922.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CMC 3f]
gi|292633539|gb|EFF52102.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CMC 3f]
Length = 296
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 29/118 (24%), Gaps = 13/118 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
ML +Q KI G P GDFN + + +
Sbjct: 187 MLLEQVR--------KIAKGRPTFCTGDFNATPDEEPVQL-LLKDSLLLDSYKCTLTPPK 237
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIE 117
+ + + I+SY D S H P+ +E
Sbjct: 238 GPSGSFY---AYDKTGKTAKRIDFIFVTPKIKILSYHTIDDDIKYNKYSSDHFPVMVE 292
>gi|262198814|ref|YP_003270023.1| exodeoxyribonuclease III Xth [Haliangium ochraceum DSM 14365]
gi|262082161|gb|ACY18130.1| exodeoxyribonuclease III Xth [Haliangium ochraceum DSM 14365]
Length = 260
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 21/128 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRF-- 55
+ V+ GDFN + ++ +Q++ G + F
Sbjct: 133 LSEVAGASAGAVLCGDFNLCPTPLDSYNEDLLRGSIFHTDAERERYQRILDHGFVDLFRA 192
Query: 56 -PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS---KLSTH 111
E+ + R + + D D + + ++ S H
Sbjct: 193 AHPEERAFSWWDYRGGAFHKRQGLRIDFVLGTADIAARTERVEIDRTYRKKHDGLTASDH 252
Query: 112 CPLTIEYD 119
P+ E
Sbjct: 253 APVIAELR 260
>gi|294794491|ref|ZP_06759627.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
gi|294454821|gb|EFG23194.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
Length = 251
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 28/133 (21%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P ++ GD N I + + +
Sbjct: 124 DAFRNYLLE-LDKKKPVILCGDLNVAHQEIDLKNPKMNRKNAGFSDEERAKMTELLGAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ E K+ D I
Sbjct: 183 TDTFRHLYPDAIEQYSWWSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIHQQIFG--- 239
Query: 108 LSTHCPLTIEYDF 120
S HCP+ + D
Sbjct: 240 -SDHCPVELVIDL 251
>gi|301121913|ref|XP_002908683.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262099445|gb|EEY57497.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 388
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 8/119 (6%)
Query: 12 WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQ----KMDPDGLLIRFPQEKESTCNVI 66
WA Q+I PF + GDFN ++ + Q ++ S
Sbjct: 260 WARIQQISGDAPFFLMGDFNTYRHTSTYSYFTSQEGGPQLREAWPEAAKQIGDVSYTYHG 319
Query: 67 K---RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+N +++ + D + S H P+ E F
Sbjct: 320 WAGVKNDGEKTAVRAANHIDWIFYRPQMKVLATEVITEDRKGRYPSDHYPIQAELLFPS 378
>gi|237716422|ref|ZP_04546903.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|229444069|gb|EEO49860.1| conserved hypothetical protein [Bacteroides sp. D1]
Length = 279
Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 29/118 (24%), Gaps = 13/118 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
ML +Q KI G P GDFN + + +
Sbjct: 170 MLLEQVR--------KIAKGRPTFCTGDFNATPDEEPIQL-LLKDSLLLDSYKCTLTPPK 220
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIE 117
+ + + I+SY D S H P+ +E
Sbjct: 221 GPSGSFY---AYDKTGKTAKRIDFIFVTPKIKILSYHTIDDDIKYNKYSSDHFPVMVE 275
>gi|325283955|ref|YP_004256496.1| Endonuclease/exonuclease/phosphatase [Deinococcus proteolyticus
MRP]
gi|324315764|gb|ADY26879.1| Endonuclease/exonuclease/phosphatase [Deinococcus proteolyticus
MRP]
Length = 1050
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 15/146 (10%), Positives = 34/146 (23%), Gaps = 29/146 (19%)
Query: 4 QQGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ L + ++ ++ GDFN + +E
Sbjct: 643 QQARALLGFVERLKAQSGDSDVLLMGDFNAYGAEKPIQTIVDGGFVSEN---LRIPAEER 699
Query: 62 TCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQSD------------- 100
LD+ + R + + ++ Y+
Sbjct: 700 YSYQFGGQFGYLDHALASRSLDAQVSGVTEWHINADEPTLADYNVEYKANPECRTNVCTS 759
Query: 101 ---LDTRRSKLSTHCPLTIEYDFEKG 123
+ S H P+ + + +
Sbjct: 760 PDLWQNNPFRASDHDPVLVGLNLTRD 785
>gi|57168378|ref|ZP_00367512.1| exodeoxyribonuclease III [Campylobacter coli RM2228]
gi|305432793|ref|ZP_07401952.1| exodeoxyribonuclease III [Campylobacter coli JV20]
gi|57020186|gb|EAL56860.1| exodeoxyribonuclease III [Campylobacter coli RM2228]
gi|304444190|gb|EFM36844.1| exodeoxyribonuclease III [Campylobacter coli JV20]
Length = 252
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLI 53
+ ++ +K G +I GD N I T K+
Sbjct: 129 YLEKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLKLGFIDTFR 188
Query: 54 RFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + R K+ D + + S H
Sbjct: 189 EINGDIKEKYSWWSYRMKARERNVGWRIDYFFISTGLKDKLKNAFI----RDDIFGSDHA 244
Query: 113 PLTIEYD 119
P+ IE D
Sbjct: 245 PVGIEID 251
>gi|298345652|ref|YP_003718339.1| exodeoxyribonuclease III [Mobiluncus curtisii ATCC 43063]
gi|298235713|gb|ADI66845.1| exodeoxyribonuclease III [Mobiluncus curtisii ATCC 43063]
Length = 269
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 15/147 (10%), Positives = 32/147 (21%), Gaps = 36/147 (24%)
Query: 9 LKKWADQKIKTGIPFV--IAGDFNRKINSIGDTDD----------------FWQKMDPDG 50
L+ + + T + GDFN D F + +DPD
Sbjct: 123 LRSHVIRTLDTDPESLGLYLGDFNVAPRDEDVWDLADFAAATHVSEPERQVFAKLLDPDT 182
Query: 51 LLIRFPQEK------------------ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
+ + + D
Sbjct: 183 VADAVTLHDDLIGGLPGNLTEITRKFAPGWTYWDYQRARWRRNQGMKIDFALATPRLVSR 242
Query: 93 IVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + S H P+ ++++
Sbjct: 243 VTGAYIDTAERDGEQPSDHAPVIVDFE 269
>gi|169823955|ref|YP_001691566.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|167830760|dbj|BAG07676.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
Length = 253
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 19/121 (15%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRF--PQEK 59
++ P ++ GD N N I + + DG + F
Sbjct: 135 LRDRKPVIVCGDLNVAHNEIDLKNPQSNRRSAGFTDEERNKMSLLLNDGYIDTFRYFYPD 194
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ + FL+ + + S HCP+ +E +
Sbjct: 195 KTDEYSYWSYFAKARERNAGWRIDYFLVSDDLKDNL--VDAKIHQSIMGSDHCPVELEIN 252
Query: 120 F 120
F
Sbjct: 253 F 253
>gi|227509865|ref|ZP_03939914.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190789|gb|EEI70856.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 252
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 32/129 (24%), Gaps = 24/129 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
+ + +Q + + P ++ GD N + I + + K+ G
Sbjct: 124 KAFHAYLNQ-LDSHKPVILCGDLNVAHHEIDLKNPKSNHHNAGFTDEERQSFTKLLDQGF 182
Query: 52 LIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ F R S D + I
Sbjct: 183 MDTFRHFYPDKEDIYSWWSYRFHSRDRNAGWRIDYFVTSKRLADHISDSKILTDIFG--- 239
Query: 108 LSTHCPLTI 116
S HCP+ +
Sbjct: 240 -SDHCPVEL 247
>gi|84516350|ref|ZP_01003710.1| exodeoxyribonuclease III [Loktanella vestfoldensis SKA53]
gi|84510046|gb|EAQ06503.1| exodeoxyribonuclease III [Loktanella vestfoldensis SKA53]
Length = 259
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 31/119 (26%), Gaps = 18/119 (15%)
Query: 19 TGIPFVIAGDFNRKIN----------------SIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+P ++AGD+N + + ++ E +
Sbjct: 140 DEMPALMAGDYNIIPQGMDAARPQVWRDDALFRPESRAAYRRILNLGFTEAFRTLEPGAG 199
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLSTHCPLTIEYD 119
++ +FL+ + + R K S H P+ +E
Sbjct: 200 HYSFWDYQAGAWEKNNGIRIDHFLLTPQCADLLAGAWIEKDLRARDKPSDHVPVWVELR 258
>gi|184216050|gb|ACC77471.1| putative large secreted protein [Streptomyces rimosus]
Length = 581
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 14/118 (11%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ + + + + ++ V+AGD N S + D + E+
Sbjct: 473 QQAQAVHAFVEDVLRVDPKADVVVAGDLNDFQFSPALKTLTAGGVLTDLVDRLPRGERYG 532
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEY 118
+ + L V YD + S H P +
Sbjct: 533 YVY-----------QGNSQVLDHMLTSRHLRRVDYDIVHINAEYADQSSDHDPQVLRL 579
>gi|188989673|ref|YP_001901683.1| putative extracellular nuclease [Xanthomonas campestris pv.
campestris str. B100]
gi|167731433|emb|CAP49608.1| putative extracellular nuclease [Xanthomonas campestris pv.
campestris]
Length = 572
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 12/126 (9%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L +W D V+ GDFN ++ Q
Sbjct: 450 ESAKRLHQWLQSDPTGAQTKLAVLLGDFNAYAMETPMRSLRASGWQDAFAVVGVKQP--- 506
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPL 114
V LD+ ++ L + ++ D D + S H P+
Sbjct: 507 YSYVYDGMSGRLDHALLSPAMAKQLRGAAEWHINADAMDDAGYAKRNLPGPWRSSDHDPV 566
Query: 115 TIEYDF 120
+ +
Sbjct: 567 LLGFAL 572
>gi|90421064|ref|ZP_01228967.1| exodeoxyribonuclease III [Aurantimonas manganoxydans SI85-9A1]
gi|90334699|gb|EAS48476.1| exodeoxyribonuclease III [Aurantimonas manganoxydans SI85-9A1]
Length = 268
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 34/130 (26%), Gaps = 21/130 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKMDPDG 50
+ + + G+ ++ GD N D
Sbjct: 137 RLISAEAEPGVSSLLVGDLNIAPFETDVWSHKQLLKVVSHTPIECEGLLRAQADGRWTDL 196
Query: 51 LLIRFPQEKESTCNVIKRNKSSL-DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ P +++ R+K D+ D + ++ + D + S
Sbjct: 197 MRHHVPMDEQLFTWWSYRSKDWAASNRGRRLDHIWGSQDLAPALTAIDVMSAARSWERPS 256
Query: 110 THCPLTIEYD 119
H P+ +D
Sbjct: 257 DHVPVLASFD 266
>gi|21229733|ref|NP_635650.1| nuclease [Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|66766610|ref|YP_241372.1| nuclease [Xanthomonas campestris pv. campestris str. 8004]
gi|21111221|gb|AAM39574.1| nuclease [Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|66571942|gb|AAY47352.1| nuclease [Xanthomonas campestris pv. campestris str. 8004]
Length = 606
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 12/126 (9%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L +W D V+ GDFN ++ Q
Sbjct: 484 ESAKRLHQWLQSDPTGAQTKLAVLLGDFNAYAMETPMRSLRASGWQDAFAVVGVKQP--- 540
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPL 114
V LD+ ++ L + ++ D D + S H P+
Sbjct: 541 YSYVYDGMSGRLDHALLSPAMAKQLRGAAEWHINADAMDDAGYAKRNLPGPWRSSDHDPV 600
Query: 115 TIEYDF 120
+ +
Sbjct: 601 LLGFAL 606
>gi|302334904|ref|YP_003800111.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
gi|301318744|gb|ADK67231.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
Length = 263
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 31/124 (25%), Gaps = 23/124 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRFPQ--- 57
++ P V GDFN I + + ++ G F
Sbjct: 144 ELDAHKPIVTCGDFNVAHQEIDLRNPSTNHENPGFSDAERDSFGRLLDAGFTDTFRSLNP 203
Query: 58 -EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + R ++ D + I D S HCP+ +
Sbjct: 204 DLEGAYSWWSYRMRARERNVGWRIDYFLTSERVADRIEGASIHDEVFG----SDHCPIEL 259
Query: 117 EYDF 120
+
Sbjct: 260 QIRL 263
>gi|325679379|ref|ZP_08158964.1| exodeoxyribonuclease III [Ruminococcus albus 8]
gi|324108976|gb|EGC03207.1| exodeoxyribonuclease III [Ruminococcus albus 8]
Length = 250
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 25/121 (20%), Gaps = 23/121 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLIRFPQ 57
+ P + GD N I + D +P+
Sbjct: 132 LDKLKPVIYCGDLNVAHEEIDLKNPKSNVGNAGFSDQERGKFTELLAAGFADTFRRLYPE 191
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
R + + F++ S HCP+ ++
Sbjct: 192 TTGVYSWWSYRFNARKNNAGW--RIDYFVVSERLMDK--VGDSKILTDVMGSDHCPVQLD 247
Query: 118 Y 118
Sbjct: 248 I 248
>gi|297587792|ref|ZP_06946436.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302380031|ref|ZP_07268510.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
gi|297574481|gb|EFH93201.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302312257|gb|EFK94259.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
Length = 253
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 33/121 (27%), Gaps = 19/121 (15%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRF--PQEK 59
++ P ++ GD N N I + + DG + F
Sbjct: 135 LRDRKPVIVCGDLNVAHNEIDLKNPQSNRRSAGFTDEERNKMSLLLNDGYIDTFRYFYPD 194
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ + F++ + + S HCP+ +E +
Sbjct: 195 KTDEYSYWSYFAKARERNAGWRIDYFIVSDDLKDNL--VDAKIHQSIMGSDHCPVELEIN 252
Query: 120 F 120
F
Sbjct: 253 F 253
>gi|134098128|ref|YP_001103789.1| hypothetical protein SACE_1542 [Saccharopolyspora erythraea NRRL
2338]
gi|133910751|emb|CAM00864.1| hypothetical protein SACE_1542 [Saccharopolyspora erythraea NRRL
2338]
Length = 305
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 12/118 (10%), Positives = 29/118 (24%), Gaps = 5/118 (4%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ ++ G+P ++ GDFN + DG + +
Sbjct: 192 QRSAALVRDRIAG-FDAGLPVLLTGDFNTRAGDSESYRILTSGGLADGWETAAERLTPA- 249
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ L ++ ++ + S H P+ +
Sbjct: 250 ---WGTFGGYEEPVEGGDRIDWLLANDRVRVLKAAINPFRKDGWFPSDHLPVHALVEL 304
>gi|157414552|ref|YP_001481808.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
gi|157385516|gb|ABV51831.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
gi|315932053|gb|EFV11006.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni 327]
Length = 252
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLI 53
+ D+ +K G +I GD N I T K+
Sbjct: 129 YLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLKLGFIDTFR 188
Query: 54 RFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E + R K+ D + + S H
Sbjct: 189 EINGEIKEKYSWWSYRMKARERNVGWRIDYFFISKGLKDKLKNAFI----RDDIFGSDHA 244
Query: 113 PLTIEYD 119
P+ IE D
Sbjct: 245 PVGIEID 251
>gi|147920374|ref|YP_685852.1| exodeoxyribonuclease III [uncultured methanogenic archaeon RC-I]
gi|110621248|emb|CAJ36526.1| exodeoxyribonuclease III [uncultured methanogenic archaeon RC-I]
Length = 257
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 27/130 (20%), Gaps = 22/130 (16%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------ 49
++AD+ G V+ GD N I
Sbjct: 131 AFLEYADRLKAQGRKIVVCGDVNTAHKEIDIARPRENSKISGFLPVERAWMDKLIAHGYV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F + ++ D + + + S
Sbjct: 191 DTFRLFNDQPGQYTFWDTVTRARERNVGWRIDYFFVSENLKEQLKAAFIMTEIMG----S 246
Query: 110 THCPLTIEYD 119
HCP+ I D
Sbjct: 247 DHCPIGIRLD 256
>gi|51473457|ref|YP_067214.1| exonuclease III [Rickettsia typhi str. Wilmington]
gi|51459769|gb|AAU03732.1| E.coli exonuclease III [Rickettsia typhi str. Wilmington]
Length = 261
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 29/137 (21%), Gaps = 23/137 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKM 46
+K+W +I GD N + + +
Sbjct: 126 VRLMKEWFTTNRTKNDKIIIVGDLNIAPHEHDVWSSKQMRNVISHTDIERSLLVELQNSL 185
Query: 47 DPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDT 103
F + RN R + + ++ + +
Sbjct: 186 GFIDSNRYFISLDKKCYTWWSYRNVDWKK-SNRGRRLDHIWVSDNLKDALFSMNVLSEAR 244
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P + F
Sbjct: 245 DWLRPSDHVPYFVTLHF 261
>gi|261854669|ref|YP_003261952.1| exodeoxyribonuclease III Xth [Halothiobacillus neapolitanus c2]
gi|261835138|gb|ACX94905.1| exodeoxyribonuclease III Xth [Halothiobacillus neapolitanus c2]
Length = 256
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 31/123 (25%), Gaps = 23/123 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLIRFP 56
K P ++ GD+N I + + ++
Sbjct: 137 LQKQHKPLILCGDWNIAHKEIDLKNWKSNQKNSGFLPHERAWLDELFDRLGFVDAHRLVA 196
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ R + + D + D + + R K S H PL I
Sbjct: 197 PGEAVYTWWSNRANAWENNVGWRIDYQIITPDLADRVERATV----YRDMKFSDHAPLII 252
Query: 117 EYD 119
+Y
Sbjct: 253 DYR 255
>gi|262373770|ref|ZP_06067048.1| exodeoxyribonuclease III [Acinetobacter junii SH205]
gi|262311523|gb|EEY92609.1| exodeoxyribonuclease III [Acinetobacter junii SH205]
Length = 280
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 34/136 (25%), Gaps = 27/136 (19%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKM 46
+ LK+W D+ ++ GD+N I + + +
Sbjct: 153 AKILKQWRDE----NKSIIVCGDYNIVHKRIDIKNWSGNQKSSGCLPHERAWLDHIYDDL 208
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
QE E R ++ + + +
Sbjct: 209 GYVDTFREVRQEAELYSWWSNRGQARAKNVGW--RIDYQACSPDWKA--RTTNAWVYKEQ 264
Query: 107 KLSTHCPLTIEYDFEK 122
S H P+ I+Y +
Sbjct: 265 WFSDHAPVIIDYKINE 280
>gi|224007765|ref|XP_002292842.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971704|gb|EED90038.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 193
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 32/133 (24%), Gaps = 28/133 (21%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP---------------------DGLLIR 54
+ P + GD N + ++ + + D
Sbjct: 63 EKDGDKPIIWVGDLNVAFDEKDTWNEGAKHLAKSAGTTAEERASFAEQLGAGYIDAFRHL 122
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS-----IVSYDQSDLDTRRSKLS 109
P+ + +R + F+ + + S
Sbjct: 123 HPEGRGHYSYWSQRAGNREPNKG--LRLDYFVCSKGIMGDGDGTKAIVRDSYMVPDQLGS 180
Query: 110 THCPLTIEYDFEK 122
HCP+ +E + +K
Sbjct: 181 DHCPIVLEIEIKK 193
>gi|167583843|ref|ZP_02376231.1| Endonuclease/exonuclease/phosphatase [Burkholderia ubonensis Bu]
Length = 604
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 34/137 (24%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ E + W + T ++ GD N + L+ ++
Sbjct: 437 RAAERIAGWLAGNPTGATAEGVLLIGDLNSYAKEDPIRALEARGY---ANLVARFHGDDA 493
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTR 104
V LD+ + + ++ D+
Sbjct: 494 YSYVFGGEAGYLDHALATSTLAARVKAVHAWHINADEPVALQYTPGYKTREQQARYYAPD 553
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ I+ E
Sbjct: 554 PYRSSDHDPIVIDLALE 570
>gi|298482489|ref|ZP_07000675.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. D22]
gi|298271468|gb|EFI13043.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. D22]
Length = 316
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 39/144 (27%), Gaps = 30/144 (20%)
Query: 4 QQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ +++ + K +P ++ GDFN + + D + +
Sbjct: 174 ESAYLVQEKMKELGKGKNLPAILTGDFNVDQTHQSYNAFVEKGVLCDSYEKCDFRYATNG 233
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY------------------------DQ 98
S + + + +F + Y +
Sbjct: 234 T-----FNSFNPNSFTESRIDHVFVSPAFHVKRYGILTDTYRSIVGNGEKENANDCPEEI 288
Query: 99 SDLDTRRSKLSTHCPLTIEYDFEK 122
+ S H P+ +E +F++
Sbjct: 289 DIKAYQARTPSDHFPVKVELEFDE 312
>gi|293376548|ref|ZP_06622776.1| endonuclease/exonuclease/phosphatase family protein [Turicibacter
sanguinis PC909]
gi|325839350|ref|ZP_08166789.1| endonuclease/exonuclease/phosphatase family protein [Turicibacter
sp. HGF1]
gi|292644774|gb|EFF62856.1| endonuclease/exonuclease/phosphatase family protein [Turicibacter
sanguinis PC909]
gi|325490470|gb|EGC92786.1| endonuclease/exonuclease/phosphatase family protein [Turicibacter
sp. HGF1]
Length = 260
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 12/111 (10%), Positives = 31/111 (27%), Gaps = 4/111 (3%)
Query: 7 EWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ + ++ +++ + P V+ GDFN N ++ + +K
Sbjct: 146 KKISEYIERQQEIDQIPVVLMGDFNATPNHRIIKTFTEGELSHKRFVAVQEYDKSIYNKP 205
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ +++ + + S H PL
Sbjct: 206 T---MGRFKDSEKGMHLDYIFVSEECAVLHAEIIKDNVNGQYPSDHYPLLA 253
>gi|315652833|ref|ZP_07905807.1| exodeoxyribonuclease III [Eubacterium saburreum DSM 3986]
gi|315485035|gb|EFU75443.1| exodeoxyribonuclease III [Eubacterium saburreum DSM 3986]
Length = 259
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 26/123 (21%), Gaps = 23/123 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K++ P + GD N I + + +
Sbjct: 140 KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERAKMDIILSSGFVDSFRLLYP 199
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ ++ + D I S HCP+ +
Sbjct: 200 DKTDAYSWWSYMGGARAKNVGWRIDYFIVSAKLKDRIKEAKIHSEVLG----SDHCPVEL 255
Query: 117 EYD 119
+ +
Sbjct: 256 DIE 258
>gi|307700400|ref|ZP_07637439.1| putative exodeoxyribonuclease III [Mobiluncus mulieris FB024-16]
gi|307614385|gb|EFN93615.1| putative exodeoxyribonuclease III [Mobiluncus mulieris FB024-16]
Length = 288
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 18/154 (11%), Positives = 32/154 (20%), Gaps = 42/154 (27%)
Query: 7 EWLKKWADQKIKTGIPFV--IAGDFNRKINSIGDTDD----------------FWQKMDP 48
E L+ A + + GDFN D F + +
Sbjct: 135 EALRSHAHTLLAANPTALGLFMGDFNIAPCDEDVWDIQEFVGATHVSVPEREAFARLLQS 194
Query: 49 DGLLIRFPQEK------------------------ESTCNVIKRNKSSLDYFVIDRDNKN 84
D L ++ + + D
Sbjct: 195 DTLAQAVSLDETAISRIRTDSTNCGGLVEVTRQFAPGWTYWDYQKARWRRNQGMKIDFAL 254
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + I + K S H P+ +E
Sbjct: 255 ATPNLADKITGAFIGREERDGEKPSDHVPVVLEL 288
>gi|290789945|pdb|3FZI|A Chain A, 1.9 Angstrom Structure Of The Thermophilic Exonuclease Iii
Homologue Mth0212
gi|290789950|pdb|3G0A|A Chain A, Mth0212 With Two Bound Manganese Ions
gi|290789955|pdb|3G1K|A Chain A, Mth0212 (Wt) Crystallized In A Monoclinic Space Group
gi|290789956|pdb|3G1K|B Chain B, Mth0212 (Wt) Crystallized In A Monoclinic Space Group
gi|290789957|pdb|3G2C|A Chain A, Mth0212 In Complex With A Short Ssdna (Cgta)
gi|290789958|pdb|3G2C|B Chain B, Mth0212 In Complex With A Short Ssdna (Cgta)
gi|290789969|pdb|3G3C|A Chain A, Mth0212 (Wt) In Complex With A 6bp Dsdna Containing A
Single One Nucleotide Long 3'-Overhang
gi|290789970|pdb|3G3C|B Chain B, Mth0212 (Wt) In Complex With A 6bp Dsdna Containing A
Single One Nucleotide Long 3'-Overhang
gi|290789976|pdb|3G3Y|A Chain A, Mth0212 In Complex With Ssdna In Space Group P32
gi|290789977|pdb|3G3Y|B Chain B, Mth0212 In Complex With Ssdna In Space Group P32
gi|290789979|pdb|3G4T|A Chain A, Mth0212 (Wt) In Complex With A 7bp Dsdna
gi|290789980|pdb|3G4T|B Chain B, Mth0212 (Wt) In Complex With A 7bp Dsdna
Length = 265
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 29/120 (24%), Gaps = 22/120 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD------------------TDDFWQKMDPDGLLIR 54
+++ +G +I GDFN I D + +
Sbjct: 136 VNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTFRM 195
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
F + R ++ F ++ F S HCP+
Sbjct: 196 FNSDPGQYTWWSYRTRARERNVGW--RLDYFFVNEEFKGKVKR--SWILSDVMGSDHCPI 251
>gi|84500676|ref|ZP_00998925.1| exodeoxyribonuclease III, putative [Oceanicola batsensis HTCC2597]
gi|84391629|gb|EAQ03961.1| exodeoxyribonuclease III, putative [Oceanicola batsensis HTCC2597]
Length = 262
Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 27/133 (20%), Gaps = 24/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W + V+ GD N +
Sbjct: 133 MRDWF--HAERPEKAVLVGDLNIAPREDDVWNHKQLLRIVSHTPIEVEHLGQTQDAGKWV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ + + R+ D R + + S +
Sbjct: 191 DITRKDIPQGNLYSWWSYRSPDW-DAADKGRRLDHVWATPDIANAGHSSRILRHIRGYEQ 249
Query: 108 LSTHCPLTIEYDF 120
S H P+ +D
Sbjct: 250 PSDHAPVLATFDL 262
>gi|90421802|ref|YP_530172.1| exodeoxyribonuclease III (xth) [Rhodopseudomonas palustris BisB18]
gi|90103816|gb|ABD85853.1| exodeoxyribonuclease III (xth) [Rhodopseudomonas palustris BisB18]
Length = 270
Score = 57.1 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 10/128 (7%), Positives = 26/128 (20%), Gaps = 25/128 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD---------------------DFWQKMDPDGLLIR 54
+ ++ GD N +
Sbjct: 145 HPQGDARHILVGDLNVAPHEHDVWSHKQLLKVVSHTPIECEKLLAAQHQGGWLDVARERI 204
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHC 112
+ + R + R + + + + Y + + S H
Sbjct: 205 ALSD-KIYTWWSYR-AADWTIANRGRRLDHIWVSPALGPCVQDYQVTRDARGWERPSDHV 262
Query: 113 PLTIEYDF 120
P+T+ +
Sbjct: 263 PVTVTMEL 270
>gi|167772884|ref|ZP_02444937.1| hypothetical protein ANACOL_04272 [Anaerotruncus colihominis DSM
17241]
gi|167664817|gb|EDS08947.1| hypothetical protein ANACOL_04272 [Anaerotruncus colihominis DSM
17241]
Length = 300
Score = 57.1 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 29/119 (24%), Gaps = 3/119 (2%)
Query: 6 GEWLKKWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ + + +P ++ GDFN K S D L +
Sbjct: 183 IRVILDYMRSFNEERPMPTILMGDFNAKPTSRPVR-LLRACSDEYPQLHLTDVYTRFPAH 241
Query: 65 VIKRNKSSL-DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + + + F IV S H PL +
Sbjct: 242 INNTLHNFSGRVRPGAQPIDYIFVSDEFEIVEAHIMTDPVDGHYPSDHYPLEATLLLKS 300
>gi|224536510|ref|ZP_03677049.1| hypothetical protein BACCELL_01385 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521867|gb|EEF90972.1| hypothetical protein BACCELL_01385 [Bacteroides cellulosilyticus
DSM 14838]
Length = 296
Score = 57.1 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 13/106 (12%), Positives = 25/106 (23%), Gaps = 5/106 (4%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I +P +I GDFN + M+ +
Sbjct: 195 KEIAPHMPAIITGDFNCTPDETPLQTLEKGGMENASKVAAITYGP---SWSFHDFGRLPL 251
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + Y LS H P+ ++
Sbjct: 252 EERVL--LDYVFVSGGMKTNRYRVIQDRPENGFLSDHDPVLVDVIL 295
>gi|193215004|ref|YP_001996203.1| exodeoxyribonuclease III Xth [Chloroherpeton thalassium ATCC 35110]
gi|193088481|gb|ACF13756.1| exodeoxyribonuclease III Xth [Chloroherpeton thalassium ATCC 35110]
Length = 281
Score = 57.1 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/140 (16%), Positives = 32/140 (22%), Gaps = 24/140 (17%)
Query: 2 LSQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------DD 41
L Q E L A ++ G +I GDFN D
Sbjct: 145 LKLQMLEQLTLRAQGLMQNGADVLICGDFNVAHTEKDVHSSQNKPNATGLRPKERAAIDR 204
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
D +P E + D + +
Sbjct: 205 LLSAGLIDITRALYPDNSELFTWWPYWKGAREKNLGWRIDCFYVSPQLATRTRKVEVDTE 264
Query: 102 DTRRSKLSTHCPLTIEYDFE 121
K S H P+T+ DF
Sbjct: 265 ----EKSSDHSPVTLVLDFP 280
>gi|224543695|ref|ZP_03684234.1| hypothetical protein CATMIT_02905 [Catenibacterium mitsuokai DSM
15897]
gi|224523348|gb|EEF92453.1| hypothetical protein CATMIT_02905 [Catenibacterium mitsuokai DSM
15897]
Length = 248
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 32/133 (24%), Gaps = 23/133 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----FWQKMDPD------------ 49
EW + P ++ GD N + I +
Sbjct: 120 MEWEDAFLAYLDALNKPVILCGDLNVAHHEIDLKNPSSNHHNAGFSDQERSKMTELLSHG 179
Query: 50 --GLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+K+ + KS F++ S + L
Sbjct: 180 YIDTFRYLYPDKKDAYTWWSYMFKSRERNAGW--RIDYFIVSESLKERIKE--SLIYSDI 235
Query: 107 KLSTHCPLTIEYD 119
S HCP+ +E +
Sbjct: 236 LGSDHCPIGLEME 248
>gi|290789984|pdb|3G91|A Chain A, 1.2 Angstrom Structure Of The Exonuclease Iii Homologue
Mth0212
Length = 265
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 29/120 (24%), Gaps = 22/120 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD------------------TDDFWQKMDPDGLLIR 54
+++ +G +I GDFN I D + +
Sbjct: 136 VNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTFRM 195
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
F + R ++ F ++ F S HCP+
Sbjct: 196 FNSDPGQYTWWSYRTRARERNVGW--RLDYFFVNEEFKGKVKR--SWILSDVMGSDHCPI 251
>gi|256833636|ref|YP_003162363.1| exodeoxyribonuclease III Xth [Jonesia denitrificans DSM 20603]
gi|256687167|gb|ACV10060.1| exodeoxyribonuclease III Xth [Jonesia denitrificans DSM 20603]
Length = 264
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 13/135 (9%), Positives = 32/135 (23%), Gaps = 22/135 (16%)
Query: 7 EWLKKW--ADQKIKTGIP---FVIAGDFNRKINSIGDTD---------------DFWQKM 46
+WL + + Q+ P + GD+N D +
Sbjct: 127 QWLHQLKNSAQQWTADDPAAQVALVGDWNVAPRDTDVWDREFFEGKTHVTDPERAAFAAF 186
Query: 47 DPDGLLIR--FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
G ++ + + D + + + + +
Sbjct: 187 GDIGYTEVSRVHVPEDVYTYWDYQQLRFPKNQGMRIDFAWCSPALTKRVTGVEIDRNERK 246
Query: 105 RSKLSTHCPLTIEYD 119
S H P+ ++
Sbjct: 247 GKGASDHVPVILDIS 261
>gi|158521790|ref|YP_001529660.1| endonuclease/exonuclease/phosphatase [Desulfococcus oleovorans
Hxd3]
gi|158510616|gb|ABW67583.1| Endonuclease/exonuclease/phosphatase [Desulfococcus oleovorans
Hxd3]
Length = 261
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 27/118 (22%), Gaps = 7/118 (5%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ L ++ T +P +I GDFN S F S
Sbjct: 150 KSAAILLARLEKFSNTALPVLITGDFNAGPGS-DCHRAFTHPGRLTRPFFDVFDGDNSGT 208
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ D L N S H P+ E+ +
Sbjct: 209 FHKFTGDAVSD------RIDWILCRNMGGPREKRIITDRFAGIFPSDHFPVYAEFSLD 260
>gi|304390659|ref|ZP_07372612.1| exodeoxyribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|315654251|ref|ZP_07907159.1| exodeoxyribonuclease III [Mobiluncus curtisii ATCC 51333]
gi|304326415|gb|EFL93660.1| exodeoxyribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|315491286|gb|EFU80903.1| exodeoxyribonuclease III [Mobiluncus curtisii ATCC 51333]
Length = 286
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 15/147 (10%), Positives = 32/147 (21%), Gaps = 36/147 (24%)
Query: 9 LKKWADQKIKTGIPFV--IAGDFNRKINSIGDTD----------------DFWQKMDPDG 50
L+ + + T + GDFN D F + +DPD
Sbjct: 140 LRSHVIRTLDTDPESLGLYLGDFNVAPRDEDVWDMADFAGATHVSEPERQVFAKLLDPDT 199
Query: 51 LLIRFPQEK------------------ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
+ + + D
Sbjct: 200 VADAVTLHDDLIEGLPGNLTEITRKFAPGWTYWDYQRARWRRNQGMKIDFALATPRLVSR 259
Query: 93 IVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + S H P+ ++++
Sbjct: 260 VTGAYIDTAERDGEQPSDHAPVIVDFE 286
>gi|293115606|ref|ZP_05792271.2| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
gi|292809044|gb|EFF68249.1| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
Length = 237
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 32/123 (26%), Gaps = 23/123 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
++ P V+ GD N I + + + F +
Sbjct: 119 LRKTKPVVVTGDMNVAHKEIDLKNPKTNRKNAGFTDEERQKMTELLDSGFIDTFRYFYPD 178
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
++ KS D + ++S + D S HCP+ +
Sbjct: 179 VEQKYSWWSYMFKSREKNAGWRIDYFLASKELEDRLISAEIHDKVLG----SDHCPIELV 234
Query: 118 YDF 120
D
Sbjct: 235 IDL 237
>gi|170782608|ref|YP_001710942.1| hypothetical protein CMS_2268 [Clavibacter michiganensis subsp.
sepedonicus]
gi|169157178|emb|CAQ02359.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 273
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 4/98 (4%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
G+P V+ GDFN ++S + D L Q + V
Sbjct: 175 AGLPLVLMGDFNAPVDSFPYDALTRRAGLRDSWLDTARQATPAFG----TFPDYRPPVVG 230
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
L+ + + +D R +S H P+
Sbjct: 231 APRIDWILVSERVDVRAAAVNDFTWRGRMMSDHLPVQA 268
>gi|189345695|ref|YP_001942224.1| exodeoxyribonuclease III Xth [Chlorobium limicola DSM 245]
gi|189339842|gb|ACD89245.1| exodeoxyribonuclease III Xth [Chlorobium limicola DSM 245]
Length = 258
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 33/134 (24%), Gaps = 23/134 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------DDFWQKMD 47
E L+++ + +G ++AGD N I D
Sbjct: 126 ESLRRYICSLLDSGRQVILAGDMNIAHRDIDVHRSQNKPGAVGLRPEERAAIDAQIASGL 185
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D + P + + D + + + K
Sbjct: 186 QDIMRSMHPDAADLFTWWPYWKPARERNLGWRIDCFYLSSELAAKVTVASVD----LEEK 241
Query: 108 LSTHCPLTIEYDFE 121
S H P+ +E +
Sbjct: 242 SSDHAPVILELSLQ 255
>gi|329114100|ref|ZP_08242864.1| Exodeoxyribonuclease III [Acetobacter pomorum DM001]
gi|326696639|gb|EGE48316.1| Exodeoxyribonuclease III [Acetobacter pomorum DM001]
Length = 261
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 13/129 (10%), Positives = 29/129 (22%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGL 51
L A + FV+AGD+N I + + +
Sbjct: 125 ALTARARLLLAEETDFVLAGDYNICPAPIDCAPGALGPEDALVRPQSRAAYRRLLWLGLT 184
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLS 109
++ + L+ + + + + + S
Sbjct: 185 DALRAVHPTGAAYTFWDYQARAWERDCGLRIDHMLLSPRLAERLQTAEPDKNERAMPRPS 244
Query: 110 THCPLTIEY 118
H P +
Sbjct: 245 DHVPFIVTL 253
>gi|310817228|ref|YP_003965192.1| exodeoxyribonuclease III, putative [Ketogulonicigenium vulgare Y25]
gi|308755963|gb|ADO43892.1| exodeoxyribonuclease III, putative [Ketogulonicigenium vulgare Y25]
Length = 262
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 24/125 (19%), Gaps = 20/125 (16%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPDGLLIRFP 56
+ ++ GD N + D +
Sbjct: 138 HGEKPQKAILVGDLNIAPREDDVWNHKALLKIVSHTPIEVDHLGAAMDSGDWVDITRANI 197
Query: 57 QEKESTCNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
E R+ D+ D + + S S H P+
Sbjct: 198 PEGRLYSWWSYRSPDWDAADKGRRLDHIWATRDIAAAGHSSRVLRPARGWEGPSDHAPVF 257
Query: 116 IEYDF 120
+D
Sbjct: 258 ATFDL 262
>gi|299143331|ref|ZP_07036411.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298517816|gb|EFI41555.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 250
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 34/132 (25%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + ++ +T P V+ GD N I + +
Sbjct: 124 DVFRNYLNKLRET-KPVVLCGDLNVAHEEIDLANPATNHKNAGFTNEERSKFTELLKSGY 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +++ KS F++ D +
Sbjct: 183 IDTFRYFYPDRKDEYSWWSNFAKSRERNIGW--RIDYFVVSEELKGNLSDAKIHQS--VM 238
Query: 108 LSTHCPLTIEYD 119
S HCP+ + +
Sbjct: 239 GSDHCPVELVLE 250
>gi|227522924|ref|ZP_03952973.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
gi|227089953|gb|EEI25265.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
Length = 252
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 32/129 (24%), Gaps = 24/129 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ + +Q + + P ++ GD N + I + + K+ G
Sbjct: 124 KAFHAYLNQ-LDSHKPVILCGDLNVAHHEIDLKNPQSNHHNAGFTDEERQSFTKLLDQGF 182
Query: 52 LIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ F R S D + I
Sbjct: 183 MDTFRHFYPDKEDIYSWWSYRFHSRDRNAGWRIDYFVTSKRLADHISDSKILTDIFG--- 239
Query: 108 LSTHCPLTI 116
S HCP+ +
Sbjct: 240 -SDHCPVEL 247
>gi|221201880|ref|ZP_03574917.1| exodeoxyribonuclease III [Burkholderia multivorans CGD2M]
gi|221207614|ref|ZP_03580622.1| exodeoxyribonuclease III [Burkholderia multivorans CGD2]
gi|221172460|gb|EEE04899.1| exodeoxyribonuclease III [Burkholderia multivorans CGD2]
gi|221178300|gb|EEE10710.1| exodeoxyribonuclease III [Burkholderia multivorans CGD2M]
Length = 256
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 40/143 (27%), Gaps = 31/143 (21%)
Query: 3 SQQGEWLKKWADQK------IKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
QQ ++ ++ D+ +K ++ GD N I +
Sbjct: 119 RQQAKY--RFMDEFMPHLAALKKTREVILCGDVNIVHKEIDIKNWKSNQKNSGCLPEERA 176
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + + E R ++ + + +
Sbjct: 177 WLSKLFDDVGYVDVFRTLDPRPEQYTWWSNRGQAYAKNVGW--RIDYQIATPGVAATAKS 234
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
S + K S H PLT++YD+
Sbjct: 235 TSIF--KDIKFSDHAPLTVDYDY 255
>gi|227876386|ref|ZP_03994498.1| possible exodeoxyribonuclease III [Mobiluncus mulieris ATCC 35243]
gi|269975950|ref|ZP_06182954.1| exodeoxyribonuclease III Xth [Mobiluncus mulieris 28-1]
gi|306817278|ref|ZP_07451024.1| exodeoxyribonuclease III [Mobiluncus mulieris ATCC 35239]
gi|227842927|gb|EEJ53124.1| possible exodeoxyribonuclease III [Mobiluncus mulieris ATCC 35243]
gi|269935778|gb|EEZ92308.1| exodeoxyribonuclease III Xth [Mobiluncus mulieris 28-1]
gi|304649958|gb|EFM47237.1| exodeoxyribonuclease III [Mobiluncus mulieris ATCC 35239]
Length = 288
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 18/154 (11%), Positives = 32/154 (20%), Gaps = 42/154 (27%)
Query: 7 EWLKKWADQKIKTGIPFV--IAGDFNRKINSIGDTDD----------------FWQKMDP 48
E L+ A + + GDFN D F + +
Sbjct: 135 EALRSHAHTLLAANPTALGLFMGDFNIAPCDEDVWDIQEFVGATHVSVPEREAFARLLQS 194
Query: 49 DGLLIRFPQEK------------------------ESTCNVIKRNKSSLDYFVIDRDNKN 84
D L ++ + + D
Sbjct: 195 DTLAQAVSLDETAISRIGTDSTNCGGLVEVTRQFAPGWTYWDYQKARWRRNQGMKIDFAL 254
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + I + K S H P+ +E
Sbjct: 255 ATPNLADKITGAFIGREERDGEKPSDHVPVVLEL 288
>gi|167765272|ref|ZP_02437385.1| hypothetical protein BACSTE_03660 [Bacteroides stercoris ATCC
43183]
gi|167696900|gb|EDS13479.1| hypothetical protein BACSTE_03660 [Bacteroides stercoris ATCC
43183]
Length = 287
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 26/105 (24%), Gaps = 3/105 (2%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDF-WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++ G+P ++ GDFN + S +
Sbjct: 185 ELSDGLPVIVTGDFNAEPESDVIKHMTDAENPKHLQDTRLMSPIVYGPSWSFHDFGKIPY 244
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N ++ Y LS H P+ + +
Sbjct: 245 DKRPL--IDYVFVRNDLKVLRYGVLAETEGSEFLSDHAPVLVTVE 287
>gi|317478380|ref|ZP_07937544.1| endonuclease/Exonuclease/phosphatase [Bacteroides sp. 4_1_36]
gi|316905539|gb|EFV27329.1| endonuclease/Exonuclease/phosphatase [Bacteroides sp. 4_1_36]
Length = 283
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 6/118 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + Q + +P ++ GDFN ++S + G+ K +
Sbjct: 172 RESAVLILEKIKQ-MAGDLPVIVTGDFNGTVDSEPV-----TVLTEGGMKNACVTAKVAY 225
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ R I + + Y D LS H P+
Sbjct: 226 GPTWSFHDFGRIPVEKRRLIDFIFIKGAVEVERYRTIDDKPDNGYLSDHAPVMAILKL 283
>gi|301066021|ref|YP_003788044.1| exonuclease III [Lactobacillus casei str. Zhang]
gi|300438428|gb|ADK18194.1| Exonuclease III [Lactobacillus casei str. Zhang]
Length = 252
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 37/133 (27%), Gaps = 25/133 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQK 45
+Q +W K + ++ P V GD N I +D F ++
Sbjct: 119 RQ-QWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERADFTKQ 177
Query: 46 MDPD--GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+D + + R + + F+ F Y Q
Sbjct: 178 LDSGFIDTFRNLYPDTVTYSWWSYRFHARANNAGW--RIDYFVSSRDFK--PYIQDAKIL 233
Query: 104 RRSKLSTHCPLTI 116
S HCP+ +
Sbjct: 234 TDIMGSDHCPVEL 246
>gi|331002672|ref|ZP_08326187.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
gi|330407085|gb|EGG86589.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
Length = 262
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 26/123 (21%), Gaps = 23/123 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K++ P + GD N I + + +
Sbjct: 143 KLEEKKPVIFCGDLNVAHKEIDLKNPKTNRKNAGFTDEERGKMDIVLSSGFADSFRVLYP 202
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + + + D I S HCP+ +
Sbjct: 203 DKEGAYSWWSYMGGARAKNVGWRIDYFIVSDKLKDRIKEAKIHSDILG----SDHCPVEL 258
Query: 117 EYD 119
+ +
Sbjct: 259 DIE 261
>gi|291007593|ref|ZP_06565566.1| hypothetical protein SeryN2_23964 [Saccharopolyspora erythraea NRRL
2338]
Length = 295
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 12/118 (10%), Positives = 29/118 (24%), Gaps = 5/118 (4%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ ++ G+P ++ GDFN + DG + +
Sbjct: 182 QRSAALVRDRIAG-FDAGLPVLLTGDFNTRAGDSESYRILTSGGLADGWETAAERLTPA- 239
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ L ++ ++ + S H P+ +
Sbjct: 240 ---WGTFGGYEEPVEGGDRIDWLLANDRVRVLKAAINPFRKDGWFPSDHLPVHALVEL 294
>gi|262408023|ref|ZP_06084571.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|262354831|gb|EEZ03923.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
Length = 292
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 29/118 (24%), Gaps = 13/118 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
ML +Q KI G P GDFN + + +
Sbjct: 183 MLLEQVR--------KIAKGRPTFCTGDFNATPDEEPIQL-LLKDSLLLDSYKCTLTPPK 233
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIE 117
+ + + I+SY D S H P+ +E
Sbjct: 234 GPSGSFY---AYDKTGKTAKRIDFIFVTPKIKILSYHTIDDDIKYNKYSSDHFPVMVE 288
>gi|255530733|ref|YP_003091105.1| endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
gi|255343717|gb|ACU03043.1| Endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
Length = 281
Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 7/118 (5%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + +KK Q+I +P V+ GD N + T + + P
Sbjct: 171 ESAKLIKKKI-QEIAPALPVVLTGDLNVTPETEAITTIK-TFLTDSKEVSEEPAYGPEGT 228
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ I+ F + + + S H P+ F+
Sbjct: 229 -----FNGFKFNAPLKEKIDYIFINRGFKVQKFAVLTDSKNQRYPSDHLPIMARLFFK 281
>gi|304320394|ref|YP_003854037.1| exodeoxyribonuclease III [Parvularcula bermudensis HTCC2503]
gi|303299296|gb|ADM08895.1| exodeoxyribonuclease III [Parvularcula bermudensis HTCC2503]
Length = 264
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 31/126 (24%), Gaps = 28/126 (22%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQE-----K 59
P ++ GD N + + I +E +
Sbjct: 140 DQPHILVGDLNIAPHENDVWSHKQLLKVVSHTPPETERLAALMEAAPFIDVMRELTADEQ 199
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS-------IVSYDQSDLDTRRSKLSTHC 112
+ R+K R + + + ++ D + S H
Sbjct: 200 KLYTWWSYRSKDWRK-SNRGRRLDHIWVSPALKDRALAKGRRAFTVHDDVRGWDRPSDHA 258
Query: 113 PLTIEY 118
P+T++
Sbjct: 259 PVTLDL 264
>gi|84501585|ref|ZP_00999757.1| endonuclease/exonuclease/phosphatase family protein [Oceanicola
batsensis HTCC2597]
gi|84390206|gb|EAQ02765.1| endonuclease/exonuclease/phosphatase family protein [Oceanicola
batsensis HTCC2597]
Length = 336
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 38/143 (26%), Gaps = 29/143 (20%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD--------------------TDDFWQ 44
Q WL++ + G P ++ GD N D
Sbjct: 196 QAIWLRRRVAGHLAAGEPLIVMGDLNDGPGLDEYENLFGRSSVEIVLGDEAPRLYDPHVD 255
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ L + + ++ LDY +I + + I
Sbjct: 256 QALAARLTAAPTTARFHIQPDDRYLQALLDYIMISP--DLMSHNPRWRIWHPFDDPGCWS 313
Query: 105 RSKL-------STHCPLTIEYDF 120
R +L S H P+ ++ D
Sbjct: 314 RPQLRDALITASDHFPVVLDIDL 336
>gi|332533496|ref|ZP_08409359.1| hypothetical protein PH505_aq00380 [Pseudoalteromonas haloplanktis
ANT/505]
gi|332037043|gb|EGI73501.1| hypothetical protein PH505_aq00380 [Pseudoalteromonas haloplanktis
ANT/505]
Length = 910
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 31/132 (23%), Gaps = 21/132 (15%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
W D K ++ GD N + ++ +
Sbjct: 644 ANAFADWLDSKPTGVDDEDTILVGDMNAYAMEDPIR--AFADKGYKNVVAEIDGDTLGYS 701
Query: 64 NVIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQ---------SDLDTRRS 106
SLD+ V + + + + Y+ S
Sbjct: 702 YSFSGRAGSLDHAVATQSLLSKVVAATDWHINADEPISLDYNVEFKSEGQQSSLYSESAY 761
Query: 107 KLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 762 RASDHDPVIIDI 773
>gi|330448573|ref|ZP_08312221.1| endonuclease/Exonuclease/phosphatase family protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328492764|dbj|GAA06718.1| endonuclease/Exonuclease/phosphatase family protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 283
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 47/122 (38%), Gaps = 3/122 (2%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L+ Q + +++W + + +PF++ GDFN +I+ D+ + + L Q
Sbjct: 159 LNLQRKIVQQWVNNQQTKQVPFIVVGDFNHRIHQPPSIDNGFISSSANKPLKWLSQNING 218
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS---DLDTRRSKLSTHCPLTIEY 118
+C + + Y + + F + S Q + +LS HCPL
Sbjct: 219 SCLAKVTKNNRVYYRQYKQLIDHGFSSVHFILNSAQQIQFAKHQVEQYQLSDHCPLLFNL 278
Query: 119 DF 120
Sbjct: 279 TL 280
>gi|118592059|ref|ZP_01549453.1| exodeoxyribonuclease III [Stappia aggregata IAM 12614]
gi|118435355|gb|EAV42002.1| exodeoxyribonuclease III [Stappia aggregata IAM 12614]
Length = 269
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 32/128 (25%), Gaps = 22/128 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDGLLIRF 55
W + +T P ++ GD N F Q + G L
Sbjct: 141 WLKGE-ETAKPAILVGDLNVAPYEHDVWSHKKLLKVVSHTPVETELFEQVREAGGWLDAM 199
Query: 56 PQ----EKESTCNVIKRNKSS-LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
Q +++ R K D+ + + K S
Sbjct: 200 RQFTPLDEKLYTWWSYRAKDWSAADKGRRLDHVWVSQPLAPHVKGTTVLRDARGWEKPSD 259
Query: 111 HCPLTIEY 118
H P+ E+
Sbjct: 260 HAPVIAEF 267
>gi|94985077|ref|YP_604441.1| endonuclease/exonuclease/phosphatase [Deinococcus geothermalis DSM
11300]
gi|94555358|gb|ABF45272.1| Extracellular nuclease containing Fibronectin III domain
[Deinococcus geothermalis DSM 11300]
Length = 1266
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/145 (8%), Positives = 32/145 (22%), Gaps = 29/145 (20%)
Query: 5 QGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L + Q ++ GD N + + ++
Sbjct: 848 QAQELLNFVQTVQTAAGDPDVLLLGDLNAYGDEDPIRTLVGGGFESLNR---RIPAEDRY 904
Query: 63 CNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQSD-------------- 100
LD+ + + + + + Y+
Sbjct: 905 SYQFGGQFGYLDHALASAALSGQVTGITEWHVNSDEPTFLDYNVEYKNNPNCTSSSCTTP 964
Query: 101 --LDTRRSKLSTHCPLTIEYDFEKG 123
+ S H P+ + + +
Sbjct: 965 DLYQPDAFRSSDHDPVLVGLNLKSD 989
>gi|323357077|ref|YP_004223473.1| exonuclease III [Microbacterium testaceum StLB037]
gi|323273448|dbj|BAJ73593.1| exonuclease III [Microbacterium testaceum StLB037]
Length = 282
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/151 (7%), Positives = 33/151 (21%), Gaps = 35/151 (23%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------GLLIRFPQE- 58
+ +++ ++ GD N + + + + F
Sbjct: 132 DAMEQRLATLKAERELALVTGDLNVGHRELDIKNWRGNRKNAGFLPRERAYFDRFFGPAG 191
Query: 59 ---------------------------KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF 91
+ R K+ D +
Sbjct: 192 EQVEGVDGSVGTGLGWVDVGRRRMGEVEGPYTFWSMRGKAFDTDSGWRIDYHVATPALAE 251
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ Y + ++ S H P+ ++Y +
Sbjct: 252 RVTDYRVDRAPSYDTRWSDHSPVIVDYTLGR 282
>gi|291222020|ref|XP_002731016.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 338
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/129 (10%), Positives = 33/129 (25%), Gaps = 22/129 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGL 51
+++ + + P + GD N I T+ ++
Sbjct: 214 REYMKK-LDEKKPIIWCGDLNVAHQEIDLTNPKTNKKTAGFSKEEREGFTKHLEIGLVDS 272
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E ++ + I F++ ++ + + S H
Sbjct: 273 YRHLNPE-KTGEWSFWTYMMNARGKNIGWRLDYFVLSK--RLLPCLCDSIIRSQVYGSDH 329
Query: 112 CPLTIEYDF 120
P+ + F
Sbjct: 330 APIVLFMAF 338
>gi|268316715|ref|YP_003290434.1| Endonuclease/exonuclease/phosphatase [Rhodothermus marinus DSM
4252]
gi|262334249|gb|ACY48046.1| Endonuclease/exonuclease/phosphatase [Rhodothermus marinus DSM
4252]
Length = 370
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 39/126 (30%), Gaps = 24/126 (19%)
Query: 1 MLSQ--QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
ML + Q L+ W DQ+ +P +++GDFN + F+ +
Sbjct: 252 MLQRAAQVRQLRAWIDQE---ELPVILSGDFNSTPD-----QWFYGWLSRGLQAAGRLGG 303
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ R + L+ + + + LS H P+
Sbjct: 304 IAAPSWPAGR---------PLVRIDHVLVSREW-----EVLGGAVPAAGLSDHRPVIARL 349
Query: 119 DFEKGN 124
+ + +
Sbjct: 350 RWRRTS 355
>gi|303236641|ref|ZP_07323222.1| AP endonuclease domain family protein [Prevotella disiens
FB035-09AN]
gi|302483145|gb|EFL46159.1| AP endonuclease domain family protein [Prevotella disiens
FB035-09AN]
Length = 168
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 21/122 (17%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +QQ E + K+ + IP ++ GDFN S R E
Sbjct: 62 IRAQQVEIVAKYVKTYLDKKIPVILCGDFNDSPIS---------------YARRTISEGL 106
Query: 61 STCNVIKRNKSSLDY--FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ C V N + Y + N + F D T S H P+ +
Sbjct: 107 TDCYVASGNGPGISYHQSGMYVRIDNIFCSDDFVPYGAKVDDKITN----SDHYPIYVWL 162
Query: 119 DF 120
+
Sbjct: 163 KY 164
>gi|257452215|ref|ZP_05617514.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
gi|317058758|ref|ZP_07923243.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
gi|313684434|gb|EFS21269.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
Length = 250
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 34/131 (25%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P V+ GD N I + + +
Sbjct: 124 DEFRSYLAKLNEA-KPVVVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERTKFTELLKAGF 182
Query: 50 -GLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
++ + R + + F++ N + Q +
Sbjct: 183 TDSFRYLYPDRLHAYSWWSYRANARKNNTGW--RIDYFVVSNDWKEQI--QEAEIHAEQE 238
Query: 108 LSTHCPLTIEY 118
S HCP+ +
Sbjct: 239 GSDHCPVALYL 249
>gi|221069494|ref|ZP_03545599.1| exodeoxyribonuclease III Xth [Comamonas testosteroni KF-1]
gi|220714517|gb|EED69885.1| exodeoxyribonuclease III Xth [Comamonas testosteroni KF-1]
Length = 271
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 34/128 (26%), Gaps = 25/128 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-----------------------GLL 52
+K FV+ GD N + + + +
Sbjct: 144 HLKAERDFVLCGDINIAHQQADLKNWRGNQKNSGFLPEERDWMTKLLHKTEISGGLVDVY 203
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ C N+ + L + + ++ +S + K S H
Sbjct: 204 RLLQPDTTDACYTWWSNRGQAYANNVGWRLDYHLATPAVAALARTESIY--KGEKFSDHA 261
Query: 113 PLTIEYDF 120
P+TI YD
Sbjct: 262 PITIGYDL 269
>gi|149202233|ref|ZP_01879206.1| endonuclease/exonuclease/phosphatase family protein [Roseovarius
sp. TM1035]
gi|149144331|gb|EDM32362.1| endonuclease/exonuclease/phosphatase family protein [Roseovarius
sp. TM1035]
Length = 341
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 41/144 (28%), Gaps = 28/144 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-----------------------TDD 41
Q WL++ + + T ++ GD N D
Sbjct: 198 QAVWLRQRIEAHLATDDSLIVLGDLNDGPGLDEYEHLFGRSSVEIIMGEGQDAAAALYDP 257
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK-----NFLIDNSFSIVSY 96
+ + + + + ++ LDY +I D + V +
Sbjct: 258 HARGALLQRFGVVHTSARFYLRDQRRYMQALLDYILISPDLMARRPVWRIWHPFDDPVCW 317
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
D +L S H P++++ +
Sbjct: 318 DNKELRDALLMASDHFPVSLDLEL 341
>gi|189025772|ref|YP_001933544.1| hypothetical protein TPASS_0544 [Treponema pallidum subsp. pallidum
SS14]
gi|189018347|gb|ACD70965.1| hypothetical protein TPASS_0544 [Treponema pallidum subsp. pallidum
SS14]
Length = 624
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 10/106 (9%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++ + +P V+AGDFN S M + E E V + +LD
Sbjct: 529 RRERADLPVVVAGDFNDFWFSDVIQKFTAVGMHSA---LDLLPETERYTYVYRGYSQTLD 585
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + R ++S H P+ ++ +
Sbjct: 586 NILSVG-------ARTETADILHINAEQPARERVSDHDPVFVQLSW 624
>gi|115360279|ref|YP_777417.1| endonuclease/exonuclease/phosphatase [Burkholderia ambifaria AMMD]
gi|115285567|gb|ABI91083.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria AMMD]
Length = 627
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 33/139 (23%), Gaps = 22/139 (15%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ E + W ++ GD N + L+
Sbjct: 490 RAAERVAGWLATSPTGAAADGVLLIGDLNSYAKEDPLRALESRGY---TNLVARFVGNAG 546
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTR 104
V +LD+ + + ++ D+
Sbjct: 547 YTYVFHGEAGNLDHALATPPLAARVKAVHTWHINADEPIALQAVPDYKTPAQQAAYYAPD 606
Query: 105 RSKLSTHCPLTIEYDFEKG 123
+ S H P+ I+ E+G
Sbjct: 607 AYRSSDHDPVVIDVALEEG 625
>gi|269798609|ref|YP_003312509.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282849823|ref|ZP_06259207.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294792738|ref|ZP_06757885.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
gi|269095238|gb|ACZ25229.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282580760|gb|EFB86159.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294456637|gb|EFG25000.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
Length = 251
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 28/133 (21%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P ++ GD N I + + +
Sbjct: 124 DAFRNYLLE-LDKKKPVILCGDLNVAHQEIDLKNPKTNRKNAGFSDEERAKMTELLGAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ E K+ D I
Sbjct: 183 TDTFRHLYPDAIEQYSWWSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIHQQIFG--- 239
Query: 108 LSTHCPLTIEYDF 120
S HCP+ + D
Sbjct: 240 -SDHCPVELVIDL 251
>gi|220904154|ref|YP_002479466.1| exodeoxyribonuclease III Xth [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868453|gb|ACL48788.1| exodeoxyribonuclease III Xth [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 268
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/125 (9%), Positives = 29/125 (23%), Gaps = 23/125 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGLLIRF 55
++ + P V+ GDFN I + +
Sbjct: 147 AEECRKSKPIVVCGDFNIAHRPIDLARPKPNEKCTGFLPEERAFLDRFTALGYVDTFRHV 206
Query: 56 PQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ ++ + ++ F + + S HCP+
Sbjct: 207 HGDAPDNYSWWSYKTRARAKNVGW--RIDYFFVSQELAPAIR--DAWIENDVYGSDHCPV 262
Query: 115 TIEYD 119
+ +
Sbjct: 263 GLSLE 267
>gi|298253361|ref|ZP_06977153.1| exonuclease III [Gardnerella vaginalis 5-1]
gi|297532756|gb|EFH71642.1| exonuclease III [Gardnerella vaginalis 5-1]
Length = 288
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 20/120 (16%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDP--------------------DGLLIRFPQEK 59
G ++ GDFN S+ + + D + + +
Sbjct: 168 GNQAILCGDFNIAHTSLDIKNAKANEKSAGFLPEERAYIDRWINEYEFVDVMRMLAGDIQ 227
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+R K+ + D + + + S + ++ ++ S H PL+I+YD
Sbjct: 228 GPYTWWSQRGKAFDNNVGWRLDYQFATPEIAESARGFVIDRAESYDARWSDHAPLSIKYD 287
>gi|326789162|ref|YP_004306983.1| endonuclease/exonuclease/phosphatase [Clostridium lentocellum DSM
5427]
gi|326539926|gb|ADZ81785.1| Endonuclease/exonuclease/phosphatase [Clostridium lentocellum DSM
5427]
Length = 257
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 27/111 (24%), Gaps = 4/111 (3%)
Query: 11 KWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
++ + K +P ++ GDFN S + KE +
Sbjct: 150 EYVGECYQKEKLPCILMGDFNAGPQSKLIQQFSQGSYSDKRFIAVQDVRKEIY---NEAT 206
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ F I + S H P+ E +
Sbjct: 207 MGHFKGKTRGLHIDYIFVSEEFEIKDVEIIKYQKNNKYPSDHYPILAEINL 257
>gi|163757409|ref|ZP_02164498.1| putative exodeoxyribonuclease iii protein [Hoeflea phototrophica
DFL-43]
gi|162284911|gb|EDQ35193.1| putative exodeoxyribonuclease iii protein [Hoeflea phototrophica
DFL-43]
Length = 270
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 33/131 (25%), Gaps = 23/131 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--------------------QKMDPDGL 51
A+ ++K GI ++ GD N D +
Sbjct: 141 HAESELKDGISSILVGDLNIAPLETDVWSHKQLLKVVSHTPVETENLTGMQQGGAWVDLI 200
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLS 109
P E++ R K R + + + + S
Sbjct: 201 RTHIPPEEKVFTWWSYRAKDWA-AADRGRRLDHVWSSADLADGLSKIEVLREARGWERPS 259
Query: 110 THCPLTIEYDF 120
H P+T +DF
Sbjct: 260 DHVPVTAHFDF 270
>gi|148271891|ref|YP_001221452.1| hypothetical protein CMM_0712 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829821|emb|CAN00742.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 276
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 4/98 (4%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
G+P V+ GDFN ++S + D L Q + V
Sbjct: 178 AGLPLVLIGDFNAPVDSFPYDALTRRAGLRDSWLDTARQATPAFG----TFPDYRPPVVD 233
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
L+ + + + +D R +S H P+
Sbjct: 234 GPRIDWILVSDRVDVRAAAVNDFAWRGRMMSDHLPVQA 271
>gi|331657785|ref|ZP_08358747.1| exodeoxyribonuclease III (Exonuclease III) (EXO III)
(APendonuclease VI) [Escherichia coli TA206]
gi|331056033|gb|EGI28042.1| exodeoxyribonuclease III (Exonuclease III) (EXO III)
(APendonuclease VI) [Escherichia coli TA206]
Length = 123
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 26/122 (21%), Gaps = 25/122 (20%)
Query: 23 FVIAGDFNRKINSIGD----------------------TDDFWQKMDPDGLLIRFPQEKE 60
+I GD N + + + M + +
Sbjct: 1 MLIMGDMNISPGDLDIGIGEENRKRWLRTGKCSFLPEEREWMERLMSWGLVDTFRHANPQ 60
Query: 61 S---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ R+K D + D + V K S H P+
Sbjct: 61 TADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWAT 120
Query: 118 YD 119
+
Sbjct: 121 FR 122
>gi|283782977|ref|YP_003373731.1| putative exodeoxyribonuclease III [Gardnerella vaginalis 409-05]
gi|283441148|gb|ADB13614.1| putative exodeoxyribonuclease III [Gardnerella vaginalis 409-05]
Length = 288
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 20/120 (16%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDP--------------------DGLLIRFPQEK 59
G ++ GDFN S+ + + D + + +
Sbjct: 168 GNQAILCGDFNIAHTSLDIKNAKANEKSAGFLPEERAYIDRWINEYEFVDVMRMLAGDIQ 227
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+R K+ + D + + + S + ++ ++ S H PL+I+YD
Sbjct: 228 GPYTWWSQRGKAFDNNVGWRLDYQFATPEIAESARGFVIDRAESYDARWSDHAPLSIKYD 287
>gi|154491719|ref|ZP_02031345.1| hypothetical protein PARMER_01330 [Parabacteroides merdae ATCC
43184]
gi|154087960|gb|EDN87005.1| hypothetical protein PARMER_01330 [Parabacteroides merdae ATCC
43184]
Length = 287
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 9/110 (8%), Positives = 25/110 (22%), Gaps = 13/110 (11%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE------STCNVIKR 68
+ + +P ++ GDFN + + + +
Sbjct: 182 KLLSRNLPVIVTGDFNAVPTDDPI-----KVLTDEKDPRHLTHARTLAPLCYGPEWTFHD 236
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + ++ + S HCP+
Sbjct: 237 YGRVPLDERVW--IDYIFVKGNVKVLRHGVLAESLDNLYPSDHCPVISRI 284
>gi|297154471|gb|ADI04183.1| hypothetical protein SBI_01062 [Streptomyces bingchenggensis BCW-1]
Length = 297
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 10/119 (8%), Positives = 22/119 (18%), Gaps = 5/119 (4%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + + +P ++ GDFN + D +
Sbjct: 184 ERAAALITERLGG-LDAALPRIVTGDFNVAAHGNPVYDAMLGGGTLVDSWDAAERRSAQY 242
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
L + + S H P+
Sbjct: 243 A----TFHGYRPLVPDGDRIDWILTSPTVHTHYAAINPYSRDGQFPSDHLPVQAVMQLP 297
>gi|257463916|ref|ZP_05628302.1| exodeoxyribonuclease III [Fusobacterium sp. D12]
gi|317061443|ref|ZP_07925928.1| exodeoxyribonuclease III [Fusobacterium sp. D12]
gi|313687119|gb|EFS23954.1| exodeoxyribonuclease III [Fusobacterium sp. D12]
Length = 250
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 33/131 (25%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P V+ GD N I + + +
Sbjct: 124 DEFRNYLSK-LNEKKPVVVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERNKFTELLQAGF 182
Query: 50 -GLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + R + + F++ N + Q +
Sbjct: 183 TDSFRYLYPDTLHAYSWWSYRANARKNNTGW--RIDYFVVSNDWKEQI--QEAEIHAEQE 238
Query: 108 LSTHCPLTIEY 118
S HCP+ +
Sbjct: 239 GSDHCPVALYL 249
>gi|154149895|ref|YP_001403513.1| exodeoxyribonuclease III Xth [Candidatus Methanoregula boonei 6A8]
gi|153998447|gb|ABS54870.1| exodeoxyribonuclease III Xth [Methanoregula boonei 6A8]
Length = 269
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 27/137 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDG 50
L + + + +I GDFN + +++
Sbjct: 135 LLGFVKELLSQKKNVIICGDFNIAHKDKDLVNAKTTPLIVGIYPEEREKLNELERLGFVD 194
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS-------IVSYDQSDLDT 103
+N S F + ++ +
Sbjct: 195 AFRYKHPNLVRYSRWPYQNNSRELNLGW--RLDYFFVSAGLKDSITESEMLYHPGESDSH 252
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S HCP+T+E
Sbjct: 253 PQIAGSDHCPITLELSM 269
>gi|257465990|ref|ZP_05630301.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
gi|315917146|ref|ZP_07913386.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
gi|313691021|gb|EFS27856.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
Length = 250
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 34/131 (25%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + + P V+ GD N I + + +
Sbjct: 124 DEFRSYLAKLNEA-KPVVVCGDMNVAHEEIDLKNPKTNRRNAGFTDEERSKFTELLKAGF 182
Query: 50 -GLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
++ + R + + F++ N + Q +
Sbjct: 183 TDSFRYLYPDRLHAYSWWSYRANARKNNTGW--RIDYFVVSNDWKEQI--QEAEIHAEQE 238
Query: 108 LSTHCPLTIEY 118
S HCP+ +
Sbjct: 239 GSDHCPVALYL 249
>gi|241888975|ref|ZP_04776279.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
gi|241864224|gb|EER68602.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
Length = 254
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 25/115 (21%), Gaps = 23/115 (20%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE-KESTC 63
V+ GD N I + + + + +
Sbjct: 139 VVVCGDLNVAHTEIDLKNPKSNMKNAGFTPEEREKFTKLLDAGFIDTFRYYNPDLTGAYS 198
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + + D D + S + S HCP+ +
Sbjct: 199 WWSYRFNARKNNAGWRIDYFLVSRDLEEYLESAAIHNEIFG----SDHCPVELVL 249
>gi|301165660|emb|CBW25231.1| putative endonuclease/exonuclease/phosphatase family protein
[Bacteriovorax marinus SJ]
Length = 256
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 29/120 (24%), Gaps = 10/120 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSI--GDTDDFWQKMDPDGLLIRFPQEKE 60
Q + L + +P ++ GDFN + W + + +E
Sbjct: 145 RSQIQVLISEIKKINTKSLPIILTGDFNESPAEDVREVINREWTNLYDAWQFLGKEEET- 203
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
L D F S + S H P+ + +
Sbjct: 204 -------SFHKFDGVHDEGSRIDWILTDRFFKTKSIEIIKEHREEIYPSDHFPVFASFTY 256
>gi|15639533|ref|NP_218983.1| hypothetical protein TP0544 [Treponema pallidum subsp. pallidum
str. Nichols]
gi|3322837|gb|AAC65531.1| predicted coding region TP0544 [Treponema pallidum subsp. pallidum
str. Nichols]
gi|291059921|gb|ADD72656.1| endonuclease/exonuclease/phosphatase family [Treponema pallidum
subsp. pallidum str. Chicago]
Length = 622
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 10/106 (9%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++ + +P V+AGDFN S M + E E V + +LD
Sbjct: 527 RRERADLPVVVAGDFNDFWFSDVIQKFTAVGMHSA---LDLLPETERYTYVYRGYSQTLD 583
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + R ++S H P+ ++ +
Sbjct: 584 NILSVG-------ARTETADILHINAEQPARERVSDHDPVFVQLSW 622
>gi|113969876|ref|YP_733669.1| PKD domain-containing protein [Shewanella sp. MR-4]
gi|113884560|gb|ABI38612.1| PKD domain containing protein [Shewanella sp. MR-4]
Length = 948
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 36/139 (25%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ +W + ++ GD N + L + +
Sbjct: 653 RAATAAGQWIAAQYPEQG-VLLIGDLNSYAKEDPLSALANAGFSE--LFAKLEKANP-YS 708
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDLDTRRS 106
V LD+ + + + + ++ Y+ Q +
Sbjct: 709 YVFSGESGQLDHALANAALVDKVLDVTEWHINTDEPRVLDYNEEFKTAAQVQDLYASDAY 768
Query: 107 KLSTHCPLTIEYDFEKGNV 125
+ S H P+ I E N+
Sbjct: 769 RSSDHDPVVISLLLEAENL 787
>gi|325914373|ref|ZP_08176720.1| putative extracellular nuclease [Xanthomonas vesicatoria ATCC
35937]
gi|325539381|gb|EGD11030.1| putative extracellular nuclease [Xanthomonas vesicatoria ATCC
35937]
Length = 572
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 32/126 (25%), Gaps = 12/126 (9%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L +W D V+ GDFN + Q
Sbjct: 450 ESAKRLHQWLQTDPTGAQTKLAVLLGDFNAYAMETPMRSLRASGWQDAFAVAGVKQP--- 506
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPL 114
V LD+ ++ L V+ D D + S H P+
Sbjct: 507 YSYVYDGMSGRLDHALLSPAMAKQLRGAVEWHVNADAMDDAGYAKRNLPGPWRSSDHDPV 566
Query: 115 TIEYDF 120
+ +
Sbjct: 567 LLGFSL 572
>gi|260754011|ref|YP_003226904.1| exodeoxyribonuclease III Xth [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258553374|gb|ACV76320.1| exodeoxyribonuclease III Xth [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 261
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 39/133 (29%), Gaps = 20/133 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSI-----------------GDTDDFWQKMDPD 49
+ A + P ++AGD+N + ++ +W+++
Sbjct: 126 KAFLAHARSLWQQEKPVILAGDYNVVPSFDIKDIRNAAALADNALLAPESLFYWRQLLAM 185
Query: 50 GLL---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
G + + +S + D+ D + + +
Sbjct: 186 GWTDSLRVRHLSEPLYSFWDYQAQSWPRDDGMRIDHILLTPDLADGLTDSGVDRQMRGQE 245
Query: 107 KLSTHCPLTIEYD 119
K S H P+ IE D
Sbjct: 246 KASDHAPVWIEID 258
>gi|253574957|ref|ZP_04852296.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845413|gb|EES73422.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 251
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 29/123 (23%), Gaps = 23/123 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
+ P ++ GD N N I + + + F +
Sbjct: 133 LDAVKPVIVCGDLNVAHNPIDIKNAKSNEGNSGYTLEERGKMTELLASGFIDTFRHFYPD 192
Query: 59 KES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+E K D + + S HCP+++
Sbjct: 193 REGVYSWWSYMPKIRERNIGWRIDYFLASSRLAPKLQDAGIDCHILG----SDHCPVSLT 248
Query: 118 YDF 120
++
Sbjct: 249 VEW 251
>gi|239631265|ref|ZP_04674296.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239525730|gb|EEQ64731.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 252
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 37/133 (27%), Gaps = 25/133 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQK 45
+Q +W K + ++ P V GD N I +D F ++
Sbjct: 119 RQ-QWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNASFTDEERADFTKQ 177
Query: 46 MDPD--GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+D + + R + + F+ F Y Q
Sbjct: 178 LDSGFIDTFRNLYPDTVTYSWWSYRFHARANNAGW--RIDYFVSSRDFK--PYIQDAKIL 233
Query: 104 RRSKLSTHCPLTI 116
S HCP+ +
Sbjct: 234 TDIMGSDHCPVEL 246
>gi|146279157|ref|YP_001169316.1| exodeoxyribonuclease III Xth [Rhodobacter sphaeroides ATCC 17025]
gi|145557398|gb|ABP72011.1| exodeoxyribonuclease III Xth [Rhodobacter sphaeroides ATCC 17025]
Length = 262
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/134 (10%), Positives = 28/134 (20%), Gaps = 24/134 (17%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGLL 52
++ W + T ++ GD N + D + G
Sbjct: 132 RMRDWC--RSDTPRKAILVGDLNIAPREDDVWNHKALLKIVSHTPIEVDHLNALMEAGAW 189
Query: 53 ----IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRS 106
+ E R+ R + +
Sbjct: 190 IDVTRKDLPEGRLYSWWSYRSPDWE-AADKGRRLDHIWATPDIANAAHGSRILRAARGWL 248
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+ +D
Sbjct: 249 QPSDHAPVFATFDL 262
>gi|15805383|ref|NP_294077.1| exodeoxyribonuclease III [Deinococcus radiodurans R1]
gi|6458033|gb|AAF09936.1|AE001896_1 exodeoxyribonuclease III [Deinococcus radiodurans R1]
Length = 283
Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 34/132 (25%), Gaps = 25/132 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ------------ 57
+ W + + G P VI GD+N I + + + L
Sbjct: 159 QAWVSELLAAGEPVVIGGDYNIAHREIDLKNWRSNQKNSGFLPHERTWMTAHLAAGLVDC 218
Query: 58 ------EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E+ R + + D + R +LS H
Sbjct: 219 HRDCLGEEAEYTWWSNRANAYANNVGWRIDYLL---SAGVRVSGVRSD----RSVRLSDH 271
Query: 112 CPLTIEYDFEKG 123
PLT + E
Sbjct: 272 APLTGWVELESE 283
>gi|27379180|ref|NP_770709.1| exodeoxyribonuclease III [Bradyrhizobium japonicum USDA 110]
gi|27352331|dbj|BAC49334.1| exodeoxyribonuclease III [Bradyrhizobium japonicum USDA 110]
Length = 256
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 31/130 (23%), Gaps = 18/130 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDPDGLL 52
LK+ A IK +P V+AGD+N +I + + G
Sbjct: 127 RLKRHAKTFIKQDLPVVLAGDYNVAPTAIDIYPTRSWDKDALIQPKSRAAFASLVAQGWG 186
Query: 53 IR---FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+K + + D+ + S
Sbjct: 187 DAIRELHPDKRIYTFWDYKRNRWPRDAGLRLDHLLLSPALISRLAKAGVDKKVRGEDGAS 246
Query: 110 THCPLTIEYD 119
H P I
Sbjct: 247 DHAPAWIVLR 256
>gi|328541797|ref|YP_004301906.1| exodeoxyribonuclease III [polymorphum gilvum SL003B-26A1]
gi|326411549|gb|ADZ68612.1| Exodeoxyribonuclease III [Polymorphum gilvum SL003B-26A1]
Length = 269
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 34/132 (25%), Gaps = 22/132 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-----------DFWQKMDP--------- 48
+K W + +T P V+ GD N ++
Sbjct: 138 MKAWLNG-AETERPAVLVGDLNVAPYEHDVWSHKALLKIVSHTPVETELLEAIRSHGGWI 196
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D + P E++ R + D+ + + + K
Sbjct: 197 DAMRRFVPMEEKLYTWWSYRARDWAAADKGRRLDHVWVSPPLADRLKAMRVLRAARGWDK 256
Query: 108 LSTHCPLTIEYD 119
S H P+ ++
Sbjct: 257 PSDHAPVIAVFE 268
>gi|251800194|ref|YP_003014925.1| endonuclease/exonuclease/phosphatase [Paenibacillus sp. JDR-2]
gi|247547820|gb|ACT04839.1| Endonuclease/exonuclease/phosphatase [Paenibacillus sp. JDR-2]
Length = 264
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/108 (14%), Positives = 24/108 (22%), Gaps = 1/108 (0%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A Q+ G+P ++ GDFN + + N S
Sbjct: 158 AKQRALDGLPALLTGDFNSYPGEFPIRFLRGEIEIDGKKSGLTDAYSQIAENPGLTFHSF 217
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
F +S S H P+ F
Sbjct: 218 -KGGDSGEPIDYIFATAEFQFLSVQIDRSQVNGRYPSDHYPVVAAIRF 264
>gi|254468203|ref|ZP_05081609.1| exodeoxyribonuclease III [beta proteobacterium KB13]
gi|207087013|gb|EDZ64296.1| exodeoxyribonuclease III [beta proteobacterium KB13]
Length = 259
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 27/137 (19%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ---------------------K 45
+++ + + K + ++ GD N I +
Sbjct: 127 KFMTELLNLKTQKKEKIILCGDLNIAHKEIDLKNHKGNKKNSGFLPEERAWITNLIEEIG 186
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
I +E+ + R ++ + + S +++ D +
Sbjct: 187 WKDTYRNIYPNEEELAYTWWSNRGQAWANNVGW--RIDYQMTSPS---LTFQIKDAVVYK 241
Query: 106 S-KLSTHCPLTIEYDFE 121
+ S H PL ++YDF
Sbjct: 242 EERFSDHSPLIVDYDFN 258
>gi|197123175|ref|YP_002135126.1| endonuclease/exonuclease/phosphatase [Anaeromyxobacter sp. K]
gi|196173024|gb|ACG73997.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter sp. K]
Length = 261
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 33/121 (27%), Gaps = 15/121 (12%)
Query: 3 SQQGEWL-KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L + P V+ GDFN + + + + P
Sbjct: 134 RRQAAALLSADILRDAALSHPLVLVGDFNSPSDRSAVPRWLRRTLTDCAVAAGRPAATFP 193
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ +D + ++ + R + S H PL +E +
Sbjct: 194 SAWP-------------LLRLDRAYVDAALRVLGCEVIRTPLAR-RASDHLPLVVELELT 239
Query: 122 K 122
+
Sbjct: 240 E 240
>gi|50954256|ref|YP_061544.1| exodeoxyribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50950738|gb|AAT88439.1| exodeoxyribonuclease III [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 278
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 9/87 (10%), Positives = 23/87 (26%)
Query: 34 NSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI 93
+D D + R ++ + D + + ++
Sbjct: 192 EDEPGYNDGAGLGWVDVGRKWAGEVDGPYTWWTWRGQAFDNDTGWRIDYQLATPALAATV 251
Query: 94 VSYDQSDLDTRRSKLSTHCPLTIEYDF 120
Y + + S H P+ ++Y
Sbjct: 252 TDYSVDRAASYAERWSDHTPVVVDYAL 278
>gi|11498188|ref|NP_069414.1| exodeoxyribonuclease III (xthA) [Archaeoglobus fulgidus DSM 4304]
gi|2650040|gb|AAB90657.1| exodeoxyribonuclease III (xthA) [Archaeoglobus fulgidus DSM 4304]
Length = 257
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 28/132 (21%), Gaps = 19/132 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
E L + + + V GD N I ++
Sbjct: 125 ERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVCFHEDARRAYKKILELGF 184
Query: 49 DGLLIRFPQEKESTCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+L + + R + D + V K
Sbjct: 185 VDVLRKIHPNERIYTFYDYRVKGAIERGLGWRVDAILATPPLAERCVDCYADIKPRLAEK 244
Query: 108 LSTHCPLTIEYD 119
S H PL +D
Sbjct: 245 PSDHLPLVAVFD 256
>gi|260172862|ref|ZP_05759274.1| hypothetical protein BacD2_13418 [Bacteroides sp. D2]
gi|315921145|ref|ZP_07917385.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313695020|gb|EFS31855.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 290
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 33/130 (25%), Gaps = 16/130 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + + P ++ GDFN S + D + + +
Sbjct: 166 RESAKLVISKIKEMCGKD-PVILTGDFNVDQTSESYQVLHESGILSDSYEVAQMRYATNG 224
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--SDLDTRRSK--------LSTHC 112
+ + + +F++ Y T+ S H
Sbjct: 225 TCTGWNPNTYTPN-----RIDHIFVTPNFTVEKYGVLTDTYRTKNETTGKYESHIPSDHF 279
Query: 113 PLTIEYDFEK 122
P+ F +
Sbjct: 280 PVKAVLRFNR 289
>gi|296126298|ref|YP_003633550.1| exodeoxyribonuclease III Xth [Brachyspira murdochii DSM 12563]
gi|296018114|gb|ADG71351.1| exodeoxyribonuclease III Xth [Brachyspira murdochii DSM 12563]
Length = 257
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 33/122 (27%), Gaps = 22/122 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGLLIRFPQ 57
K+K+ ++ GD N +I + F +
Sbjct: 139 KLKSKTNVILCGDMNIAHEAIDLARPKENEKSIGFLPEEREKITEFLNKGFTDTFRMFVK 198
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E + +S D + + +I D S HCP+ IE
Sbjct: 199 EGGHYSWWDMKTRSREKNVGWRIDYFFVNNEIAQNIKRADIMT----DVMGSDHCPILIE 254
Query: 118 YD 119
+D
Sbjct: 255 WD 256
>gi|255597554|ref|XP_002536800.1| ap endonuclease, putative [Ricinus communis]
gi|223518503|gb|EEF25584.1| ap endonuclease, putative [Ricinus communis]
Length = 130
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 33/128 (25%), Gaps = 23/128 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDPDGLL 52
+ G VI GD+N I + + ++ +
Sbjct: 7 HLQELKAEGREIVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWMTRIFDELGLVDVH 66
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
Q E R ++ + + ++ S + + S H
Sbjct: 67 RGIDQRPEQYTWWSNRGQAWAKNVGW--RIDYHVATPGIAARAHAVSIY--KDERFSDHA 122
Query: 113 PLTIEYDF 120
PL I+Y
Sbjct: 123 PLIIDYHL 130
>gi|116494506|ref|YP_806240.1| exonuclease III [Lactobacillus casei ATCC 334]
gi|191637944|ref|YP_001987110.1| Exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227535523|ref|ZP_03965572.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|116104656|gb|ABJ69798.1| Exonuclease III [Lactobacillus casei ATCC 334]
gi|190712246|emb|CAQ66252.1| Exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227186845|gb|EEI66912.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|327382014|gb|AEA53490.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|327385172|gb|AEA56646.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
Length = 252
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 37/133 (27%), Gaps = 25/133 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQK 45
+Q +W K + ++ P V GD N I +D F ++
Sbjct: 119 RQ-QWDKDFLAYTNQLAAKKPLVYCGDLNVAHQEIDLKNDKTNHHNAGFTDEERADFTKQ 177
Query: 46 MDPD--GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+D + + R + + F+ F Y Q
Sbjct: 178 LDSGFIDTFRNLYPDTVTYSWWSYRFHARANNAGW--RIDYFVSSRDFK--PYIQDAKIL 233
Query: 104 RRSKLSTHCPLTI 116
S HCP+ +
Sbjct: 234 TDIMGSDHCPVEL 246
>gi|213626805|gb|AAI70146.1| Deoxyribonuclease I [Xenopus laevis]
Length = 350
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 4/118 (3%)
Query: 5 QGEWLKK-WADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L W D K + +I GD+N + + ++ L+ +KE T
Sbjct: 162 EVDALYDAWVDAKQRLKMENILILGDYNAACSYVASRHWPIIRLRHVEELVWLIGDKEDT 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEY 118
N + + + ++ ++ +Y + T +S H P+ +E
Sbjct: 222 TVSTNTNCAYDRMVAGGEELQRGIVPDTAKAFNYHVAYDLTYEMAKAVSDHYPVEVEL 279
>gi|213623922|gb|AAI70402.1| Deoxyribonuclease I [Xenopus laevis]
gi|213625346|gb|AAI70400.1| Deoxyribonuclease I [Xenopus laevis]
gi|213626040|gb|AAI70148.1| Deoxyribonuclease I [Xenopus laevis]
Length = 350
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 4/118 (3%)
Query: 5 QGEWLKK-WADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L W D K + +I GD+N + + ++ L+ +KE T
Sbjct: 162 EVDALYDAWVDAKQRLKMENILILGDYNAACSYVASRHWPIIRLRHVEELVWLIGDKEDT 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEY 118
N + + + ++ ++ +Y + T +S H P+ +E
Sbjct: 222 TVSTNTNCAYDRMVAGGEELQRGIVPDTAKAFNYHVAYDLTYEMAKAVSDHYPVEVEL 279
>gi|260907098|ref|ZP_05915420.1| exodeoxyribonuclease III [Brevibacterium linens BL2]
Length = 251
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 32/130 (24%), Gaps = 20/130 (15%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM------DPDGLLIRFPQE------- 58
+ K +I GD N + + + F +
Sbjct: 119 RLPELAKQADHVLITGDLNVCHTERDLKNWKANRKKAGFLPEERAYFDGFFGDVGYVDVH 178
Query: 59 -------KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
R ++ + D + + + V D+ + S H
Sbjct: 179 RDLSGDVDGPYTWWSMRGQAFDNNAGWRIDYQMATPALAKAAVKATVDKADSWAERWSDH 238
Query: 112 CPLTIEYDFE 121
PL I+YD
Sbjct: 239 APLVIDYDLP 248
>gi|148234330|ref|NP_001081058.1| deoxyribonuclease I [Xenopus laevis]
gi|12249029|dbj|BAB20384.1| deoxyribonuclease I [Xenopus laevis]
Length = 350
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 4/118 (3%)
Query: 5 QGEWLKK-WADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L W D K + +I GD+N + + ++ L+ +KE T
Sbjct: 162 EVDALYDAWVDAKQRLKMENILILGDYNAACSYVASRHWPIIRLRHVEELVWLIGDKEDT 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEY 118
N + + + ++ ++ +Y + T +S H P+ +E
Sbjct: 222 TVSTNTNCAYDRMVAGGEELQRGIVPDTAKAFNYHVAYDLTYEMAKAVSDHYPVEVEL 279
>gi|315636243|ref|ZP_07891495.1| exodeoxyribonuclease III [Arcobacter butzleri JV22]
gi|315479452|gb|EFU70133.1| exodeoxyribonuclease III [Arcobacter butzleri JV22]
Length = 262
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 30/126 (23%), Gaps = 23/126 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRF 55
+ K G ++ GD N I +
Sbjct: 141 ENLKKDGKSIIVCGDVNTAHTEIDIARPKANENTSGFLQMERDWITKFLSHGYIDTFRLI 200
Query: 56 PQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ + R + + F + + Y + + S HCP+
Sbjct: 201 NGDIKDKYSWWSYRANARANNVGW--RIDYFYVSSDLK--DYVKDAYILDNIEGSDHCPI 256
Query: 115 TIEYDF 120
+E +F
Sbjct: 257 GLEMEF 262
>gi|291294670|ref|YP_003506068.1| Endonuclease/exonuclease/phosphatase [Meiothermus ruber DSM 1279]
gi|290469629|gb|ADD27048.1| Endonuclease/exonuclease/phosphatase [Meiothermus ruber DSM 1279]
Length = 641
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 32/136 (23%), Gaps = 22/136 (16%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L W ++ GD+N ++
Sbjct: 499 RAVQQLVAWLATHPTGIADPDILLIGDYNSYAQEDPIATLKKAGFINLLEARL---GPDA 555
Query: 62 TCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDLDTR 104
V LDY + + + +++ Y+
Sbjct: 556 YSYVFDGQWGYLDYALASASLNAQVSGVAEYHINADEPNVLDYNTNFKTPNLQVLLYAPD 615
Query: 105 RSKLSTHCPLTIEYDF 120
+ + S H P+ + +
Sbjct: 616 QYRTSDHDPVVVGLNL 631
>gi|301162733|emb|CBW22280.1| putative endonuclease/exonuclease/phosphatase family protein
[Bacteroides fragilis 638R]
Length = 279
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 29/105 (27%), Gaps = 3/105 (2%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDF-WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++ G+P ++ GDFN + S + + +
Sbjct: 177 ELSDGLPVIVTGDFNSEPESDVIKHVTDFANPEHLTDARQASPIVYGPSWSFHDFGKIPY 236
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N ++ Y + LS H P+ + +
Sbjct: 237 NKRPL--IDYVFVRNGLKVLRYGILAETENNAFLSDHTPVLVTVE 279
>gi|156362086|ref|XP_001625612.1| predicted protein [Nematostella vectensis]
gi|156212454|gb|EDO33512.1| predicted protein [Nematostella vectensis]
Length = 257
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 24/136 (17%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------ 49
+Q +W K + +K+ P ++ GD N I +
Sbjct: 125 RQ-QWNKDFLSYLKKLDEIKPVILCGDLNVAHKDIDLANPKTNTRTAGFTKEERADFTTL 183
Query: 50 ------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+K+S + F++ + +
Sbjct: 184 LGEGFKDTFRELYPDKKSA-YTFWSYMGGARAKNVGWRLDYFVVSDRLVPKVC--DSIIR 240
Query: 104 RRSKLSTHCPLTIEYD 119
R S HCPL++
Sbjct: 241 SRVMGSDHCPLSLLLS 256
>gi|86151219|ref|ZP_01069434.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
260.94]
gi|315123837|ref|YP_004065841.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|85841566|gb|EAQ58813.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
260.94]
gi|315017559|gb|ADT65652.1| exodeoxyribonuclease III [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 252
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDGLLI 53
+ D+ +K G +I GD N I T K+
Sbjct: 129 YLDKLLKDGFEIIICGDVNTAHKEIDLTHPKANANTSGFLPIERAWIDDLLKLGFIDTFR 188
Query: 54 RFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E + R K+ F I + S H
Sbjct: 189 EINGEIKEKYSWWSYRMKARERNVGW--RIDYFFISKGLKDKLKNA--FIRDDIFGSDHA 244
Query: 113 PLTIEYD 119
P+ IE D
Sbjct: 245 PIGIEID 251
>gi|294055155|ref|YP_003548813.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
gi|293614488|gb|ADE54643.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
Length = 262
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/136 (10%), Positives = 31/136 (22%), Gaps = 25/136 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------ 49
+ EW + + ++ P V GD N I + + +
Sbjct: 129 RTLEWDVDFLAYVKGLEVTKPVVFCGDLNVAHTEIDLANPKTNRKNAGFTDEERGRFDAI 188
Query: 50 ------GLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
++ R + F + ++
Sbjct: 189 IEAGFIDTFRHLYPDRTEQYSWWSYRAAARQRNIGW--RIDYFCVSDAVKNQIR--DATI 244
Query: 103 TRRSKLSTHCPLTIEY 118
+ S HCP+ +
Sbjct: 245 LADTLGSDHCPVGLRL 260
>gi|322417960|ref|YP_004197183.1| endonuclease/exonuclease/phosphatase [Geobacter sp. M18]
gi|320124347|gb|ADW11907.1| Endonuclease/exonuclease/phosphatase [Geobacter sp. M18]
Length = 346
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 34/123 (27%), Gaps = 16/123 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E + ++ ++ F++AGDFN D + + G+ F +
Sbjct: 237 QAERVAEYLGRERGD---FLVAGDFN-----SPDHSLVCETLRKTGMTDAFAEAGRGYGY 288
Query: 65 VIKRNKSSLDYFV---IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + S H P+ ++ +
Sbjct: 289 SYGHFLLKDRIPYLRASWMRIDHIMTSAGLRARNCRVGT-----RRASDHRPVIADFILK 343
Query: 122 KGN 124
N
Sbjct: 344 DSN 346
>gi|220917964|ref|YP_002493268.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955818|gb|ACL66202.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter dehalogenans
2CP-1]
Length = 261
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 15/121 (12%)
Query: 3 SQQGEWL-KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L + P V+ GDFN + + + + P
Sbjct: 134 RRQAAALLSADILRDAALSHPLVLVGDFNSPSDRSAVPRWLRRTLTDCAVAAGRPAATFP 193
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ +D + +++ + R + S H PL +E +
Sbjct: 194 SAWP-------------LLRLDRAYVDAALRVLACEVIRTPLAR-RASDHLPLVVELELT 239
Query: 122 K 122
+
Sbjct: 240 E 240
>gi|148223007|ref|NP_001081376.1| DNase I [Xenopus laevis]
gi|6683039|dbj|BAA89002.1| DNase I [Xenopus laevis]
Length = 350
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 4/118 (3%)
Query: 5 QGEWLKK-WADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L W D K + +I GD+N + + ++ L+ +KE T
Sbjct: 162 EVDALYDAWVDAKQRLKMENILILGDYNAACSYVASRHWPIIRLRHVEELVWLIGDKEDT 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEY 118
N + + + ++ ++ +Y + T +S H P+ +E
Sbjct: 222 TVSTNTNCAYDRMVAGGEELQRGIVPDTAKAFNYHVAYDLTYEMAKAVSDHYPVEVEL 279
>gi|225166446|ref|ZP_03728100.1| endonuclease/exonuclease/phosphatase [Opitutaceae bacterium TAV2]
gi|224799314|gb|EEG17887.1| endonuclease/exonuclease/phosphatase [Opitutaceae bacterium TAV2]
Length = 313
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 12/126 (9%)
Query: 3 SQQGEWLKKWADQKIKT-------GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF 55
+++ E ++ Q+ G F+IAGD N ++S + +
Sbjct: 193 AKEAEAIRNRVLQRFPNPAATGGGGGRFLIAGDCNDVVSSRPIRALLKR--GNTEIARLL 250
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
P Y +D + + + + S S H P+
Sbjct: 251 PATDSRGETWTHYYAREETYSRVDNILVSPALAAAVVRMWVVDS---PGVLVASDHRPVA 307
Query: 116 IEYDFE 121
+E ++
Sbjct: 308 VELRWK 313
>gi|288556715|ref|YP_003428650.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
gi|288547875|gb|ADC51758.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
Length = 251
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 30/132 (22%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ LK++ + P V GD N + + +
Sbjct: 124 DALKEYLLD-LDRHKPVVYCGDLNVAHAEVDLKNARSNHGNSGFTLEERGKMTTLLESGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
E ++ F++ + S
Sbjct: 183 IDSFRYLYPERTDAFTWWSYMRDVRARNIGW--RIDYFIVSTQLKEKINEASIYA--EVL 238
Query: 108 LSTHCPLTIEYD 119
S HCP+ +E D
Sbjct: 239 GSDHCPIGLELD 250
>gi|227512799|ref|ZP_03942848.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227083999|gb|EEI19311.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
Length = 252
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 31/129 (24%), Gaps = 24/129 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ + +Q + + P ++ GD N I + + K+ G
Sbjct: 124 KAFHAYLNQ-LDSHKPVILCGDLNVAHYEIDLKNPQSNHHNAGFTDEERQSFTKLLDQGF 182
Query: 52 LIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ F R S D + I
Sbjct: 183 MDTFRHFYPDKEDIYSWWSYRFHSRDRNAGWRIDYFVTSKRLADHISDSKILTDIFG--- 239
Query: 108 LSTHCPLTI 116
S HCP+ +
Sbjct: 240 -SDHCPVEL 247
>gi|317374848|sp|A0MTA1|APEX1_DANRE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; Short=zAP1
gi|117549778|gb|ABK35081.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549788|gb|ABK35082.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549790|gb|ABK35083.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
gi|117549792|gb|ABK35084.1| apurinic/apyrimidinic endonuclease 1 [Danio rerio]
Length = 310
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 19/117 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQ--EK 59
+ P V+ GD N I + + ++ G F +
Sbjct: 192 LDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAGFTPEEREGFTQLLEAGFTDSFRELYPD 251
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ + + F++ ++ + S HCP+T+
Sbjct: 252 QAYAYTFWTYMMNARSKNVGWRLDYFVLSSALLPGLC--DSKIRNTAMGSDHCPITL 306
>gi|55962497|emb|CAI11781.1| novel protein (zgc:66204) [Danio rerio]
Length = 310
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 19/117 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQ--EK 59
+ P V+ GD N I + + ++ G F +
Sbjct: 192 LDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAGFTPEEREGFTQLLEAGFTDSFRELYPD 251
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ + + F++ ++ + S HCP+T+
Sbjct: 252 QAYAYTFWTYMMNARSKNVGWRLDYFVLSSALLPGLC--DSKIRNTAMGSDHCPITL 306
>gi|253682566|ref|ZP_04863363.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum D str. 1873]
gi|253562278|gb|EES91730.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum D str. 1873]
Length = 631
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 9/124 (7%)
Query: 1 MLSQQGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
+ +Q + K+A++ +K V+ GD N S T + ++
Sbjct: 515 LRMKQASIVNKFAEEILKANPNGNVVLLGDMNDFNFSNTVTALKGKSF---ENMVDKLPA 571
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+E + + N LD +++++ ++ +I S + + S H P+ I+
Sbjct: 572 EERFTYIHQGNSQVLDNILVNKNIVLKTKVDAVNINSAFTD----AQGRCSDHDPVLIQI 627
Query: 119 DFEK 122
DF K
Sbjct: 628 DFRK 631
>gi|253746967|gb|EET01931.1| Endonuclease/Exonuclease/phosphatase [Giardia intestinalis ATCC
50581]
Length = 322
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 32/131 (24%), Gaps = 22/131 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPD-- 49
E + K+ I G V GD N N I + + K+ D
Sbjct: 192 ELIFKYIGDLIAAGKDVVYCGDLNVAHNEIDLYNPRNNHFSPGFTDEERSAFSKLLDDHG 251
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + N F++ + LD +
Sbjct: 252 LIDVFRTMHPQLVKFSWFS--NFGRARQHKHGWRIDYFVVTYEIFKRVTMVNILDDHNTY 309
Query: 108 LSTHCPLTIEY 118
S H P+ +
Sbjct: 310 -SDHVPIIMRL 319
>gi|209883511|ref|YP_002287368.1| exodeoxyribonuclease III xth [Oligotropha carboxidovorans OM5]
gi|209871707|gb|ACI91503.1| exodeoxyribonuclease III xth [Oligotropha carboxidovorans OM5]
Length = 271
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 11/127 (8%), Positives = 26/127 (20%), Gaps = 25/127 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD---------------------DFWQKMDPDGLLIR 54
+ G ++ GD N +
Sbjct: 146 HAEDGANHILVGDLNVAPHEHDVWSHRQLLNVVSHTPVECEKLLAVQAQGGWIDVARQRI 205
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHC 112
+++ R + R + + + + + + S H
Sbjct: 206 PM-DEKVYTWWSYR-AADWTVGNRGRRLDHIWVSPALGDKVRDFRILRDARSWERPSDHV 263
Query: 113 PLTIEYD 119
P+T D
Sbjct: 264 PVTAVLD 270
>gi|217035255|pdb|2VOA|A Chain A, Structure Of An Ap Endonuclease From Archaeoglobus
Fulgidus
gi|217035256|pdb|2VOA|B Chain B, Structure Of An Ap Endonuclease From Archaeoglobus
Fulgidus
Length = 257
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 28/132 (21%), Gaps = 19/132 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDP 48
E L + + + V GD N I ++
Sbjct: 125 ERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVXFHEDARRAYKKILELGF 184
Query: 49 DGLLIRFPQEKESTCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+L + + R + D + V K
Sbjct: 185 VDVLRKIHPNERIYTFYDYRVKGAIERGLGWRGDAILATPPLAERCVDCYADIKPRLAEK 244
Query: 108 LSTHCPLTIEYD 119
S H PL +D
Sbjct: 245 PSDHLPLVAVFD 256
>gi|188574659|ref|YP_001911588.1| nuclease [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188519111|gb|ACD57056.1| nuclease [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 572
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 32/126 (25%), Gaps = 12/126 (9%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L +W D V+ GDFN + + Q
Sbjct: 450 ESAKGLHEWLQTDPTGAQTKRAVLVGDFNAYAMEMPMRSLRASGWQDAFAVAGVKQP--- 506
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPL 114
V D+ ++ L ++ D D + S H P+
Sbjct: 507 YSFVDDGMSGRQDHALLSPAMAKQLRGAVEWHINADVMDAAGYAKRNLPGPWRSSDHDPV 566
Query: 115 TIEYDF 120
+ +
Sbjct: 567 LLGFSL 572
>gi|118587710|ref|ZP_01545120.1| Endonuclease/exonuclease/phosphatase [Stappia aggregata IAM 12614]
gi|118439332|gb|EAV45963.1| Endonuclease/exonuclease/phosphatase [Stappia aggregata IAM 12614]
Length = 320
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 40/120 (33%), Gaps = 16/120 (13%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + L+K A + KT P ++AGD N ++ + ++ C
Sbjct: 213 HQADILQKLASEVSKTPGPVLVAGDMNAAS-----WAPLLKRFQETAGVR------KAVC 261
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
I + +F + + ++ + + S H P+ E+ +G
Sbjct: 262 GSRWTPTWLAPVPGIGLELDHFFVKDGLAVKNCE-----LGHFNGSDHWPVFAEFTLAEG 316
>gi|116695065|ref|YP_840641.1| extracellular nuclease [Ralstonia eutropha H16]
gi|113529564|emb|CAJ95911.1| extracellular nuclease [Ralstonia eutropha H16]
Length = 600
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 37/133 (27%), Gaps = 21/133 (15%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + L +W G ++ GD N + ++ K +
Sbjct: 464 QAAQALAEWLGTTPTGVAGAGVLVIGDLNSYAMEDPVRVLARRGYAD---MVAEFAGKPA 520
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------------- 105
V LD+ + D ++ ++ D+ +
Sbjct: 521 YSYVYNGQAGYLDHVLADAAAARHVMAVHAWHINADEPPAFSYAPAPGAPAVPGHYAPGP 580
Query: 106 SKLSTHCPLTIEY 118
+ S H PL +++
Sbjct: 581 YRSSDHDPLVVDF 593
>gi|86747505|ref|YP_484001.1| exodeoxyribonuclease III [Rhodopseudomonas palustris HaA2]
gi|86570533|gb|ABD05090.1| exodeoxyribonuclease III [Rhodopseudomonas palustris HaA2]
Length = 270
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 10/127 (7%), Positives = 26/127 (20%), Gaps = 23/127 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDT----------------DDFWQKMDPDGLLIRFPQE- 58
++ GD N + D + +
Sbjct: 145 HPSGDARHILVGDLNVAPHEHDVWSHKQLLKVVSHTPVECDKLLAVQAAGNWVDVARERI 204
Query: 59 ---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLSTHCP 113
++ R + R + + + + + S H P
Sbjct: 205 PLSEKIYTWWSYR-AADWTIGDRGRRLDHIWVSEALRARVTDFKILRDARSWERPSDHVP 263
Query: 114 LTIEYDF 120
+T+ +
Sbjct: 264 VTVTMEL 270
>gi|134093450|ref|YP_001098525.1| putative nuclease [Herminiimonas arsenicoxydans]
gi|133737353|emb|CAL60396.1| Putative Nuclease [Herminiimonas arsenicoxydans]
Length = 259
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 37/140 (26%), Gaps = 26/140 (18%)
Query: 3 SQQG-----EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------------- 42
QQ + + G FVI GD+N N I +
Sbjct: 119 RQQAKFRFMDVFLPHLLELKSQGREFVICGDWNIAHNEIDLKNYKGNRKNSGFLPEEREW 178
Query: 43 ----WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ ++ + R C N+ + + S + ++
Sbjct: 179 LTRVFDEVGLVDVYRRLHPGTTEECYTWWSNRGQAYAKNVGWRIDYQVATPSLAARAHAA 238
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+ S H PLTI Y
Sbjct: 239 EIYKV--ERFSDHAPLTITY 256
>gi|289207257|ref|YP_003459323.1| exodeoxyribonuclease III Xth [Thioalkalivibrio sp. K90mix]
gi|288942888|gb|ADC70587.1| exodeoxyribonuclease III Xth [Thioalkalivibrio sp. K90mix]
Length = 257
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 40/136 (29%), Gaps = 23/136 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQ 44
+ ++ + W ++++ G +VI GD+N I + +
Sbjct: 124 RFLDFFRPWLAERMQDGREWVICGDWNIAHKEIDLRNWKSNQKNSGFLPEERAWLDHLFD 183
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
++ + R E R ++ + + +
Sbjct: 184 EIGMVDVFRRLDDRPEQYTWWSNRGQAWAKNVGW--RIDYQIATPGIAETAR--DPYIHT 239
Query: 105 RSKLSTHCPLTIEYDF 120
+ S H P I+YD+
Sbjct: 240 DDRYSDHAPFWIDYDY 255
>gi|325292791|ref|YP_004278655.1| endonuclease/exonuclease/phosphatase family protein [Agrobacterium
sp. H13-3]
gi|325060644|gb|ADY64335.1| endonuclease/exonuclease/phosphatase family protein [Agrobacterium
sp. H13-3]
Length = 267
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 16/115 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L K + G ++ GDFN S + + L+ +
Sbjct: 169 QAKRLVKLVKDIAEDGDRIIVCGDFNVLPESD-----TFTVLKELDLIELVTTRGFTDTR 223
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
K + L++ + +D +S HCPL IE+
Sbjct: 224 TSHYAKQNRF-------ADYMLVNPVVQVDHFDVVRQPE----VSDHCPLLIEFS 267
>gi|89070957|ref|ZP_01158183.1| possible Endonuclease/Exonuclease/phosphatase fa [Oceanicola
granulosus HTCC2516]
gi|89043464|gb|EAR49678.1| possible Endonuclease/Exonuclease/phosphatase fa [Oceanicola
granulosus HTCC2516]
Length = 333
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 40/141 (28%), Gaps = 26/141 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------------TDDFW 43
Q WL++ + ++ G ++ GDFN D
Sbjct: 192 QCIWLRRRVEAQLARGDSLIVLGDFNDGPGLDEYEKLFGRSGVEIVLGIGEELQLHDPHA 251
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSYDQ 98
+ L R + + + LDY ++ D + +
Sbjct: 252 AAILSRPTLARPSSARFRVPPDGRFLAAMLDYVMVSPDLAARYPAWRIWHPFEDPALFAD 311
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
DL S H P++++ D
Sbjct: 312 PDLRHALLTASDHFPVSLDLD 332
>gi|296130335|ref|YP_003637585.1| exodeoxyribonuclease III Xth [Cellulomonas flavigena DSM 20109]
gi|296022150|gb|ADG75386.1| exodeoxyribonuclease III Xth [Cellulomonas flavigena DSM 20109]
Length = 276
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 1/89 (1%)
Query: 33 INSIGDTDDFWQKMDPDGLLI-RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF 91
D ++ ++ L R K+ + D + +
Sbjct: 188 PEERAYLDRWFDELGWRDLGRDLAGPGPGPYTWWSWRGKAFDNDAGWRIDYQLATPALAA 247
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ T ++ S H PL +EYD
Sbjct: 248 LARTATVDRAATYDARFSDHAPLVVEYDL 276
>gi|171317433|ref|ZP_02906625.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria MEX-5]
gi|171097388|gb|EDT42231.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria MEX-5]
Length = 600
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 33/139 (23%), Gaps = 22/139 (15%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ E + W ++ GD N L+
Sbjct: 463 RAAERVAAWLATSPTGAAADGVLLIGDLNSYAKEDPLRALESHGY---ANLVARFVGNAG 519
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTR 104
V + +LD+ + + ++ D+
Sbjct: 520 YTYVFRGEAGNLDHALATPPLAARVKAVHAWHINADEPIALQAVPDYKTPAQQAAYYAPG 579
Query: 105 RSKLSTHCPLTIEYDFEKG 123
+ S H P+ ++ E+G
Sbjct: 580 AYRSSDHDPIVVDLAMEEG 598
>gi|293376523|ref|ZP_06622751.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
gi|292644749|gb|EFF62831.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
Length = 251
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 27/116 (23%), Gaps = 21/116 (18%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQEKEST 62
P ++ GD N I + + F +
Sbjct: 137 KPVIVCGDLNVAHQQIDLKNPKTNTKNAGFTIEERNEMTKLLNSGFIDTFRYFYP-TKEN 195
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
C ++ + F+ + S + S HCP+ ++
Sbjct: 196 CYSWWSYRAGARAKNVGWRIDYFITSKALE--SRLEDARIYPDVLGSDHCPVGLQL 249
>gi|291302792|ref|YP_003514070.1| endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
gi|290572012|gb|ADD44977.1| Endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
Length = 940
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 14/121 (11%)
Query: 4 QQGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + + + + V+AGD N S ++ D + + E
Sbjct: 689 KQAKAVNAFVKDTLAVDADANVVVAGDINDYQFSPALDALTDGEVLEDLITGL--PDTEQ 746
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYDF 120
V Y I + + L+ + + Y+ + S H P +F
Sbjct: 747 YTYV---------YNGISQVLDHILVSPALAKADYEVVHINAEFAEQNSDHDPQVARLNF 797
Query: 121 E 121
Sbjct: 798 P 798
>gi|268569472|ref|XP_002640531.1| C. briggsae CBR-EXO-3 protein [Caenorhabditis briggsae]
gi|187024770|emb|CAP36093.1| CBR-EXO-3 protein [Caenorhabditis briggsae AF16]
Length = 290
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 27/119 (22%), Gaps = 23/119 (19%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLIRFPQEKES 61
P + GD N I + + M + E++
Sbjct: 176 KPVIYGGDLNVAHEEIDLKNPESNRNKTAGFTDQERGWFTEMLEMGFTDTFRKMHPEEKK 235
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +++ + + K S H P+ + +F
Sbjct: 236 YTFWSYLANAREKDVGW--RLDYYVVSDRIMEK--VKKSEIMSDVKGSDHAPIVLHIEF 290
>gi|227536411|ref|ZP_03966460.1| endonuclease/exonuclease/phosphatase family protein
[Sphingobacterium spiritivorum ATCC 33300]
gi|227243787|gb|EEI93802.1| endonuclease/exonuclease/phosphatase family protein
[Sphingobacterium spiritivorum ATCC 33300]
Length = 371
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 21/119 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
S+Q E LK+ + IP+++ GDFN S + G+ F ++
Sbjct: 273 SEQAEALKEHIET---AKIPYMVMGDFNDTPMSYSVN------LIGKGMQNAFQKKGSGW 323
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N F+I++Y + KLS H P+ + +
Sbjct: 324 GVTHY-------EMLPIFQIDYIFTSNDFNILNYQI-----VKRKLSDHYPIWADVQLK 370
>gi|91205073|ref|YP_537428.1| exodeoxyribonuclease III [Rickettsia bellii RML369-C]
gi|157827591|ref|YP_001496655.1| exodeoxyribonuclease III [Rickettsia bellii OSU 85-389]
gi|91068617|gb|ABE04339.1| Exodeoxyribonuclease III [Rickettsia bellii RML369-C]
gi|157802895|gb|ABV79618.1| Exodeoxyribonuclease III [Rickettsia bellii OSU 85-389]
Length = 273
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/136 (10%), Positives = 30/136 (22%), Gaps = 23/136 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKM 46
+++W +IAGD N + + +
Sbjct: 126 IRLMQEWLTNNRTRDDKIIIAGDLNIAPHPHDVWSSKQLRNVISHTDIERSLLVELQNSL 185
Query: 47 DPDGLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDT 103
+ F +++ RN R + + N+ +
Sbjct: 186 EFIDSSRHFVPLDEKFYTWWSYRNVDWKK-SNRGRRLDHIWVSNNLKDELFSIHLLSEAR 244
Query: 104 RRSKLSTHCPLTIEYD 119
S H P +
Sbjct: 245 DWMPPSDHVPYFVTLR 260
>gi|32475548|ref|NP_868542.1| hypothetical protein RB8783 [Rhodopirellula baltica SH 1]
gi|32446090|emb|CAD75919.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 321
Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 5/120 (4%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q G + DQ+ T +P ++ GDFN +S Q + LL +
Sbjct: 206 EQSGRLVAAEVDQR-ATDLPVIVMGDFNAMPDSAPLK--ALQSGEKVKLLDARDEVDGKP 262
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR-RSKLSTHCPLTIEYDFE 121
DR + L+++ + Y D T S H P+ I D +
Sbjct: 263 TGPTGTWNGF-KAIQPDRRIDHVLVNDRVVVQEYRTLDPRTEAGRYASDHLPIAIRIDLK 321
>gi|312797575|ref|YP_004030497.1| Exodeoxyribonuclease III [Burkholderia rhizoxinica HKI 454]
gi|312169350|emb|CBW76353.1| Exodeoxyribonuclease III (EC 3.1.11.2) [Burkholderia rhizoxinica
HKI 454]
Length = 262
Score = 56.0 bits (133), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 32/123 (26%), Gaps = 23/123 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDPDGLLIRFPQ 57
++ + GD N I + + K+ +
Sbjct: 137 LRREREVIFCGDINIVHKEIDIKNWKSNQKNSGCLPEERAWLSKVFDKLGYVDVFRALDP 196
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E R ++ + + + S R K S H PLTI+
Sbjct: 197 RPEQYTWWSNRGQAYAKNVGW--RIDYQIATAGIASTARRTSIF--RDIKFSDHAPLTID 252
Query: 118 YDF 120
YD+
Sbjct: 253 YDY 255
>gi|47087383|ref|NP_998586.1| DNA-(apurinic or apyrimidinic site) lyase [Danio rerio]
gi|33416367|gb|AAH55545.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Danio rerio]
Length = 310
Score = 56.0 bits (133), Expect = 1e-06, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 19/117 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQ--EK 59
+ P V+ GD N I + + ++ G F +
Sbjct: 192 LDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAGFTPEEREGFTQLLEAGFTDSFRELYPD 251
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ + + F++ ++ + S HCP+T+
Sbjct: 252 QAYAYTFWTYMMNARSKNVGWRLDYFVLSSALLPGLC--DSKIRNTAMGSDHCPITL 306
>gi|145225449|ref|YP_001136127.1| exodeoxyribonuclease III Xth [Mycobacterium gilvum PYR-GCK]
gi|315445802|ref|YP_004078681.1| exodeoxyribonuclease III [Mycobacterium sp. Spyr1]
gi|145217935|gb|ABP47339.1| exodeoxyribonuclease III Xth [Mycobacterium gilvum PYR-GCK]
gi|315264105|gb|ADU00847.1| exodeoxyribonuclease III [Mycobacterium sp. Spyr1]
Length = 274
Score = 56.0 bits (133), Expect = 1e-06, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 31/125 (24%), Gaps = 19/125 (15%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQ 57
+ + G V+ GD+N + ++ G + Q
Sbjct: 149 LQRSVVDGHESVLCGDWNIAHTENDIKNWKGNVKKAGFLPQERQWLTEVLGTGWVDVVRQ 208
Query: 58 EKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
R K+ + D + S + S HCP
Sbjct: 209 AHPDVAGPYAWWSWRGKAFDNDAGWRIDYHLATPGLAARATSVLTERPAAYALRWSDHCP 268
Query: 114 LTIEY 118
+T+ Y
Sbjct: 269 VTVHY 273
>gi|260172525|ref|ZP_05758937.1| hypothetical protein BacD2_11731 [Bacteroides sp. D2]
gi|315920818|ref|ZP_07917058.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313694693|gb|EFS31528.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 299
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 40/118 (33%), Gaps = 8/118 (6%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD-PDGLLIRFPQEKESTC 63
+ L + Q+I +P+ GD N + + + + + +
Sbjct: 188 SAKLLVQKV-QEIAGDLPYFCTGDLNCDPDEEPISFILNSGLFKDSYSISETTPKGPAGT 246
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYDF 120
+ ++ L++ S ++S++ +D + S H P+ I+ +
Sbjct: 247 LHYWNFDFNPEH-----RIDYILVEKSIKVLSFETITDDARQGRFSSDHYPIMIKAEL 299
>gi|302547749|ref|ZP_07300091.1| putative secreted protein [Streptomyces hygroscopicus ATCC 53653]
gi|302465367|gb|EFL28460.1| putative secreted protein [Streptomyces himastatinicus ATCC 53653]
Length = 182
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 10/104 (9%), Positives = 20/104 (19%), Gaps = 4/104 (3%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ +P ++ GDFN + D + +
Sbjct: 83 LNPALPRIVTGDFNVAAHGNPVYDTLLNGGSLTDAWDTADRRSKLYA----TFHGYKPLV 138
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
L + S H P+ +
Sbjct: 139 PDGDRIDWILTSPGVRTRYAAIDTYSSGGQFPSDHLPVHAVLEL 182
>gi|77464426|ref|YP_353930.1| exodeoxyribonuclease III [Rhodobacter sphaeroides 2.4.1]
gi|221640316|ref|YP_002526578.1| Exodeoxyribonuclease III Xth [Rhodobacter sphaeroides KD131]
gi|332559315|ref|ZP_08413637.1| exodeoxyribonuclease III [Rhodobacter sphaeroides WS8N]
gi|77388844|gb|ABA80029.1| Exodeoxyribonuclease III [Rhodobacter sphaeroides 2.4.1]
gi|221161097|gb|ACM02077.1| Exodeoxyribonuclease III Xth [Rhodobacter sphaeroides KD131]
gi|332277027|gb|EGJ22342.1| exodeoxyribonuclease III [Rhodobacter sphaeroides WS8N]
Length = 262
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/134 (10%), Positives = 27/134 (20%), Gaps = 24/134 (17%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGLL 52
++ W + T ++ GD N + D + G
Sbjct: 132 RMRDWC--RADTPKKAILVGDLNIAPREDDVWNHKSLLKIVSHTPIEVDHLNALMEAGAW 189
Query: 53 ----IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRS 106
+ E R+ R +
Sbjct: 190 IDVTRKDLPEGRLYSWWSYRSPDWE-AADKGRRLDHIWATPDIVNAAHGSRILKAARGWL 248
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+ +D
Sbjct: 249 QPSDHAPVFATFDL 262
>gi|154251747|ref|YP_001412571.1| exodeoxyribonuclease III Xth [Parvibaculum lavamentivorans DS-1]
gi|154155697|gb|ABS62914.1| exodeoxyribonuclease III Xth [Parvibaculum lavamentivorans DS-1]
Length = 268
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 26/127 (20%), Gaps = 23/127 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDGLLIRF 55
+ K+ V+ GD N D +
Sbjct: 143 RTKSQNRMVLVGDLNIAPLEHDVWSHKQLLKVVSHTPVEVALMNELIASHDWVDVMRRFV 202
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--QSDLDTRRSKLSTHCP 113
P ++ R K L R + + + + + S H P
Sbjct: 203 PDNEKLYSWWSYRAKDWL-AADRGRRLDHIWVTPALADTPVSMTVRKDARGWERASDHAP 261
Query: 114 LTIEYDF 120
+
Sbjct: 262 VVATLRL 268
>gi|317051122|ref|YP_004112238.1| endonuclease/exonuclease/phosphatase [Desulfurispirillum indicum
S5]
gi|316946206|gb|ADU65682.1| Endonuclease/exonuclease/phosphatase [Desulfurispirillum indicum
S5]
Length = 554
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 14/128 (10%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ L + F+IAGD N Q+ L F ++ ++
Sbjct: 431 QQARMLLQQLGS--PAESRFLIAGDLNAYGREDPVR--LLQEAGMVNSLGAFDRQTQNYT 486
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR----------SKLSTHCP 113
+ +LDY + ++ D+ + + + S H P
Sbjct: 487 YIFFGQSGTLDYIFRSSALNDLARGGGIWHINVDEPPFLSYQNPQHSRSDEPWRSSDHDP 546
Query: 114 LTIEYDFE 121
+ ++ F+
Sbjct: 547 VWADFAFD 554
>gi|32266427|ref|NP_860459.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
gi|32262477|gb|AAP77525.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
Length = 252
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 30/128 (23%), Gaps = 24/128 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + ++ +I GD N I + + +
Sbjct: 127 RAFVK-NLENHKSVIICGDLNVAHQEIDLKNPKTNRRNAGFTDEERNKMSALLDAGFIDT 185
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + K+ + D + S+ + S
Sbjct: 186 FRYFYPTLTGAYSWWSYMGKARENNTGWRIDYFLCSQSLTPSLKDANI----YPHIFGSD 241
Query: 111 HCPLTIEY 118
HCP+ +E
Sbjct: 242 HCPVGLEL 249
>gi|320354767|ref|YP_004196106.1| endonuclease/exonuclease/phosphatase [Desulfobulbus propionicus DSM
2032]
gi|320123269|gb|ADW18815.1| Endonuclease/exonuclease/phosphatase [Desulfobulbus propionicus DSM
2032]
Length = 259
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 7/117 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L++W D+ + +P ++ GDFN D ++ + G L+ ++
Sbjct: 150 ARCLRQWLDRHCRE-MPCIVTGDFNA-----DKRSDAYRLLTDGGNLLDALRQVAPQGGN 203
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L+ + F + S H P+T D+++
Sbjct: 204 ESTFHAFGRPEEQAA-IDWILVSSHFRVTEARIDRSCHGHLFPSDHYPITAVLDWQR 259
>gi|149914506|ref|ZP_01903036.1| exodeoxyribonuclease III [Roseobacter sp. AzwK-3b]
gi|149811299|gb|EDM71134.1| exodeoxyribonuclease III [Roseobacter sp. AzwK-3b]
Length = 262
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 27/132 (20%), Gaps = 24/132 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W + ++ GD N D +
Sbjct: 133 MRDWF--RDGRPQKAILVGDLNIAPREDDVWSHKQLLKVVSHTPIEVAHLGDVQEAGGWV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSK 107
+ E + R K D R + S +
Sbjct: 191 DVTRSDIPEGQLYSWWSYRAKDW-DAADKGRRLDHVWASADLRHAFHSSRVLRAARGWEQ 249
Query: 108 LSTHCPLTIEYD 119
S H P+ +D
Sbjct: 250 PSDHAPVFATFD 261
>gi|120599204|ref|YP_963778.1| endonuclease/exonuclease/phosphatase [Shewanella sp. W3-18-1]
gi|120559297|gb|ABM25224.1| Endonuclease/exonuclease/phosphatase [Shewanella sp. W3-18-1]
Length = 944
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 39/139 (28%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + +W ++ ++ GD N T + ++
Sbjct: 649 RAATAVGQWLGEQYPEQG-VLLIGDLNAYAKEDPLTALANAGFSELFAEL---RKPNPYT 704
Query: 64 NVIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYD---------QSDLDTRRS 106
V LD+ + + + + + + ++ Y+ Q T
Sbjct: 705 YVFSAESGQLDHALANAELLDKVVDVTQWHINTDEPRVLDYNEEFKTPAQIQDLYSTDAY 764
Query: 107 KLSTHCPLTIEYDFEKGNV 125
+ S H P+ I E V
Sbjct: 765 RSSDHDPVVISLLLEAEKV 783
>gi|146292722|ref|YP_001183146.1| endonuclease/exonuclease/phosphatase [Shewanella putrefaciens
CN-32]
gi|145564412|gb|ABP75347.1| Endonuclease/exonuclease/phosphatase [Shewanella putrefaciens
CN-32]
Length = 944
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 39/139 (28%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + +W ++ ++ GD N T + ++
Sbjct: 649 RAATAVGQWLGEQYPEQG-VLLIGDLNAYAKEDPLTALANAGFSELFAEL---RKPNPYT 704
Query: 64 NVIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYD---------QSDLDTRRS 106
V LD+ + + + + + + ++ Y+ Q T
Sbjct: 705 YVFSAESGQLDHALANAELLDKVVDVTQWHINTDEPRVLDYNEEFKTPAQIQDLYSTDAY 764
Query: 107 KLSTHCPLTIEYDFEKGNV 125
+ S H P+ I E V
Sbjct: 765 RSSDHDPVVISLLLEAEKV 783
>gi|254480722|ref|ZP_05093969.1| exodeoxyribonuclease III [marine gamma proteobacterium HTCC2148]
gi|214039305|gb|EEB79965.1| exodeoxyribonuclease III [marine gamma proteobacterium HTCC2148]
Length = 260
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 36/137 (26%), Gaps = 23/137 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+ + + + F+I D+N I + + +
Sbjct: 125 RFMDLFMEHLKGLRRKRREFIICADWNICHKEIDLRNWRSNRKNSGFLPEERAWLDQLYD 184
Query: 50 -----GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+E + R ++ D + + +++ D
Sbjct: 185 EVGYIDSFRLVNEEPDQYTWWSNRGQAWAKNVGWRLDYQVITPRLADKVLAADIYT---- 240
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P ++YD E
Sbjct: 241 DERFSDHAPQIMDYDLE 257
>gi|66910408|gb|AAH97053.1| Apex1 protein [Danio rerio]
gi|197246969|gb|AAI64240.1| Apex1 protein [Danio rerio]
Length = 296
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 19/117 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQ--EK 59
+ P V+ GD N I + + ++ G F +
Sbjct: 178 LDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAGFTPEEREGFTQLLEAGFTDSFRELYPD 237
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ + + F++ ++ + S HCP+T+
Sbjct: 238 QAYAYTFWTYMMNARSKNVGWRLDYFVLSSALLPGLC--DSKIRNTAMGSDHCPITL 292
>gi|126463266|ref|YP_001044380.1| exodeoxyribonuclease III Xth [Rhodobacter sphaeroides ATCC 17029]
gi|126104930|gb|ABN77608.1| exodeoxyribonuclease III Xth [Rhodobacter sphaeroides ATCC 17029]
Length = 262
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/134 (10%), Positives = 27/134 (20%), Gaps = 24/134 (17%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGLL 52
++ W + T ++ GD N + D + G
Sbjct: 132 RMRDWC--RADTPKKAILVGDLNIAPREDDVWNHKSLLKIVSHTPIEVDHLNALMESGAW 189
Query: 53 ----IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRS 106
+ E R+ R +
Sbjct: 190 IDVTRKDLPEGRLYSWWSYRSPDWE-AADKGRRLDHIWATPDIVNAAHGSRILKAARGWL 248
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+ +D
Sbjct: 249 QPSDHAPVFATFDL 262
>gi|325268539|ref|ZP_08135169.1| AP endonuclease domain protein [Prevotella multiformis DSM 16608]
gi|324989067|gb|EGC21020.1| AP endonuclease domain protein [Prevotella multiformis DSM 16608]
Length = 366
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 21/118 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + ++ + + +P ++ GDFN S + + C
Sbjct: 264 QAVAVARYVRKYLDRKVPVILCGDFNDSPLSYTHRTIAREL---------------TDCY 308
Query: 65 VIKRNKSSLDY--FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V N + Y + + + F D S H P+ +
Sbjct: 309 VASGNGPGISYHRSGMYFRIDHIFCSDDFEPYGAKVDDSAE----TSDHYPVCCWLKY 362
>gi|284034261|ref|YP_003384192.1| endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
gi|283813554|gb|ADB35393.1| Endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
Length = 252
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 28/118 (23%), Gaps = 14/118 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ L +WA + P+V+ GDFN + S
Sbjct: 149 ESSRLLDRWAAA--EPDRPWVLLGDFNAEPGSPPLQVLTEAGWTD------AIPAAAGGT 200
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + L+ + +V S S H P+
Sbjct: 201 WHD------FTGATDGQRIDHILVSKPWQVVEAAVSYHRPANRLPSDHWPVAATLHLP 252
>gi|205373614|ref|ZP_03226417.1| exodeoxyribonuclease [Bacillus coahuilensis m4-4]
Length = 195
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 33/132 (25%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDP 48
+ ++ + D+ + P + GD N + +D + +
Sbjct: 68 DLVQGYLDK-LNQKKPVIFCGDLNVAHTELDVKNDRANQGNSGFTQVEREKMNGLLDLGF 126
Query: 49 DGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++ F++ SF +
Sbjct: 127 TDTYRYFNPARDDQFTWWSYMKGVRERNIGW--RIDYFIVSTSFMNTISNSDIH--DHVY 182
Query: 108 LSTHCPLTIEYD 119
S HCP+ +E
Sbjct: 183 GSDHCPIVLELS 194
>gi|226467620|emb|CAX69686.1| APEX nuclease [Schistosoma japonicum]
Length = 319
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 26/137 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD-------------------F 42
++ EW + + +K+ P ++ GD N I
Sbjct: 185 REKEWDPDFLEYLRKLDATKPVIVCGDLNVAHEEIDLARPDTNHKTAGFTDQERSGFTKL 244
Query: 43 WQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ F + +E+ R + L FL+ DQ
Sbjct: 245 LSSANLIDTYRHFYPDRREAYSFWSYRTGARLINNGW--RLDYFLVSQRILANVGDQ--E 300
Query: 102 DTRRSKLSTHCPLTIEY 118
S HCP+ +
Sbjct: 301 IRCGVTGSDHCPVVLYL 317
>gi|325962168|ref|YP_004240074.1| extracellular nuclease [Arthrobacter phenanthrenivorans Sphe3]
gi|323468255|gb|ADX71940.1| putative extracellular nuclease [Arthrobacter phenanthrenivorans
Sphe3]
Length = 1467
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 32/132 (24%), Gaps = 16/132 (12%)
Query: 5 QGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L +A Q+ K + GDFN R
Sbjct: 668 QAKSLLDFATSLQESKGTDKVFLIGDFNAYAKEDPINVFTAAGYVNQDGKARNADGTSKH 727
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--------------QSDLDTRRSKL 108
+ SLD+ + + ++ + + +
Sbjct: 728 SYLYGGMVGSLDHILASPAADAAVTGADIWNINSVESVALEYSRYNSNITNYYAPDQYRA 787
Query: 109 STHCPLTIEYDF 120
S H P+ + D
Sbjct: 788 SDHDPVIVGLDL 799
>gi|300771464|ref|ZP_07081339.1| endonuclease/exonuclease/phosphatase family protein
[Sphingobacterium spiritivorum ATCC 33861]
gi|300761453|gb|EFK58274.1| endonuclease/exonuclease/phosphatase family protein
[Sphingobacterium spiritivorum ATCC 33861]
Length = 371
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 21/119 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
S+Q E LK+ + IP+++ GDFN S + G+ F ++
Sbjct: 273 SEQAEALKEHIET---AKIPYMVMGDFNDTPMSYSVN------LIGKGMQNAFQKKGSGW 323
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ F+I++Y + KLS H P+ + +
Sbjct: 324 GVTHY-------EMLPIFQIDYIFTSKDFNILNYQI-----VKRKLSDHYPIWADVQLK 370
>gi|114800092|ref|YP_762220.1| putative exodeoxyribonuclease III [Hyphomonas neptunium ATCC 15444]
gi|114740266|gb|ABI78391.1| putative exodeoxyribonuclease III [Hyphomonas neptunium ATCC 15444]
Length = 269
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 33/127 (25%), Gaps = 23/127 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFW-------------------QKMDPDGLLIRF 55
+K+K G+ V+ GD N + + + +
Sbjct: 141 KKLKKGVKRVLVGDLNVAPHENDVWSHKQLLGIVSHTPQETERLEDSRKSAGFEDIARLA 200
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS----FSIVSYDQSDLDTRRSKLSTH 111
E++ + R + + + + SY K S H
Sbjct: 201 VPEEQKLYTWWSYRAADWAASNRGRRLDHIWANKAAMEDVKVSSYRIHPAWRSGWKPSDH 260
Query: 112 CPLTIEY 118
P+++
Sbjct: 261 APVSLTL 267
>gi|311032922|ref|ZP_07711012.1| exodeoxyribonuclease III [Bacillus sp. m3-13]
Length = 254
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 29/128 (22%), Gaps = 24/128 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
+ + ++ GD N I + + +
Sbjct: 131 AYIK-MLDQQKSVIVCGDLNVAHAEIDLKNPKSNRNNSGFTEEERGKMTRLLGEGFSDTF 189
Query: 53 IRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
F E + NK F++ ++ + S H
Sbjct: 190 RHFYPELTDKYTWWSYMNKVRERNIGW--RIDYFIVSDNLKGSL--KDAEIHSDIMGSDH 245
Query: 112 CPLTIEYD 119
CP+ + +
Sbjct: 246 CPVVLILN 253
>gi|300870922|ref|YP_003785793.1| exodeoxyribonuclease [Brachyspira pilosicoli 95/1000]
gi|300688621|gb|ADK31292.1| exodeoxyribonuclease [Brachyspira pilosicoli 95/1000]
Length = 261
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 32/122 (26%), Gaps = 22/122 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGLLIRFPQ 57
K+K ++ GD N +I + F +
Sbjct: 142 KLKDKTNVILCGDMNIAHEAIDLARPKENEKSIGFLPIERERITKFLNSGFTDTFRMFVK 201
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E + +S D + S +I D S HCP+ IE
Sbjct: 202 EGGHYSWWDMKTRSREKNVGWRIDYFFVNNEISNNIKRADILTDVLG----SDHCPILIE 257
Query: 118 YD 119
+D
Sbjct: 258 WD 259
>gi|260428642|ref|ZP_05782621.1| endonuclease/exonuclease/phosphatase family protein [Citreicella
sp. SE45]
gi|260423134|gb|EEX16385.1| endonuclease/exonuclease/phosphatase family protein [Citreicella
sp. SE45]
Length = 341
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 29/145 (20%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TD 40
Q WL++ + ++ G ++ GD N D
Sbjct: 197 QAIWLRRRVETHLQAGESVIVMGDLNDGPGLDEYEHLFGRSSVEIVLGEGVVDEAMRLHD 256
Query: 41 DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVS 95
+ + L + + + + ++ LDY ++ D + V
Sbjct: 257 PHAAQALCNRLGPQPTTARFFLKSQGRYLQAMLDYIMVSADLAATRPHWRIWHPFDDPVC 316
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +L S H P+TI+
Sbjct: 317 WRTPELREALLTASDHFPVTIDLAL 341
>gi|197120879|ref|YP_002132830.1| exodeoxyribonuclease III Xth [Anaeromyxobacter sp. K]
gi|196170728|gb|ACG71701.1| exodeoxyribonuclease III Xth [Anaeromyxobacter sp. K]
Length = 265
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 33/134 (24%), Gaps = 23/134 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDP 48
+ E ++++A +G V+ GD N + ++++
Sbjct: 118 RFLEAMERFAADAQASGRRLVLCGDLNVARTDLDVHPKERKAGAIGQLPEERALFERILS 177
Query: 49 DGLLI----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
GL+ P + D + S
Sbjct: 178 RGLVDVGRALDPANEGLFTWWAPWRNLRQRNIGWRIDYVLASASLAASATRCRV----LA 233
Query: 105 RSKLSTHCPLTIEY 118
S H P+ E+
Sbjct: 234 DFGTSDHAPVVAEF 247
>gi|312130396|ref|YP_003997736.1| endonuclease/exonuclease/phosphatase [Leadbetterella byssophila DSM
17132]
gi|311906942|gb|ADQ17383.1| Endonuclease/exonuclease/phosphatase [Leadbetterella byssophila DSM
17132]
Length = 275
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/108 (12%), Positives = 31/108 (28%), Gaps = 6/108 (5%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I +P + GD N ++ Q + P +
Sbjct: 174 KEIAGKLPVIAMGDLNSTPDTEQVVYI-SQHYNDTFNASEMPPYGPIGT-----FNAFKY 227
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + F + Y ++ S H P+ ++ + +K
Sbjct: 228 DAALKDRIDYIFVSEHFKVKKYATLTDSYQQKFPSDHLPVVVDLEIKK 275
>gi|311032597|ref|ZP_07710687.1| hypothetical protein Bm3-1_19034 [Bacillus sp. m3-13]
Length = 294
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/107 (12%), Positives = 27/107 (25%), Gaps = 8/107 (7%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+ +P ++ GDFN S + F +E++ +
Sbjct: 166 EQSLPVILTGDFNDAPESEA----LAEVSSMKSCYSCFTEEEKENSLTFHAYEGGTKGS- 220
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
N ++ S H P+ +G+
Sbjct: 221 ---PIDYIFGSNGVEFLTARILRDSFNGGYPSDHYPVLATVKILEGD 264
>gi|160895788|ref|YP_001561370.1| exodeoxyribonuclease III Xth [Delftia acidovorans SPH-1]
gi|160361372|gb|ABX32985.1| exodeoxyribonuclease III Xth [Delftia acidovorans SPH-1]
Length = 267
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 36/129 (27%), Gaps = 25/129 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-----------------------GLL 52
++K F++ GD N I + + + +
Sbjct: 140 RMKGEREFILCGDINIAHQQIDLKNWRSNQKNSGFTPEEREWMTKLLHKTDPTGGLVDVY 199
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ C N+ + L + + ++ + + K S H
Sbjct: 200 RLLQPDTTDACYTWWSNRGQAYANNVGWRLDYHLATPAIAALARTEHIY--KDVKFSDHA 257
Query: 113 PLTIEYDFE 121
P+TI YD +
Sbjct: 258 PVTIGYDMK 266
>gi|319426026|gb|ADV54100.1| Endonuclease/exonuclease/phosphatase [Shewanella putrefaciens 200]
Length = 944
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 38/139 (27%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + +W ++ ++ GD N T + ++
Sbjct: 649 RAATAVGQWLGEQYPEQG-VLLIGDLNAYAKEDPLTALANAGFSELFAEL---RKPNPYT 704
Query: 64 NVIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYD---------QSDLDTRRS 106
V LD+ + + + + + ++ Y+ Q T
Sbjct: 705 YVFSAESGQLDHALANAKLLDKVVDVTQWHINTDEPRVLDYNEEFKTPAQIQDLYSTDAY 764
Query: 107 KLSTHCPLTIEYDFEKGNV 125
+ S H P+ I E V
Sbjct: 765 RSSDHDPVVISLLLEAEKV 783
>gi|45657327|ref|YP_001413.1| exodeoxyribonuclease [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|294828126|ref|NP_712697.2| exodeoxyribonuclease [Leptospira interrogans serovar Lai str.
56601]
gi|45600565|gb|AAS70050.1| exodeoxyribonuclease [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|293385973|gb|AAN49715.2| exodeoxyribonuclease [Leptospira interrogans serovar Lai str.
56601]
Length = 254
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 26/124 (20%), Gaps = 22/124 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
++ K ++ GD N D
Sbjct: 135 KRRKKQPNIIVCGDVNIAHTPQDIHDPKGNAKSSGFLPEEREWLSEFLNKGWVDTFRYLY 194
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+K+ R + D + ++ S+ R S H PL
Sbjct: 195 PDKQEYSWWTFRAGARAKNKGWRIDYFFVTEELKKNVKSHSI----FRDKPFSDHAPLEF 250
Query: 117 EYDF 120
E
Sbjct: 251 EIKL 254
>gi|120402563|ref|YP_952392.1| exodeoxyribonuclease III Xth [Mycobacterium vanbaalenii PYR-1]
gi|119955381|gb|ABM12386.1| exodeoxyribonuclease III Xth [Mycobacterium vanbaalenii PYR-1]
Length = 270
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 19/125 (15%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQ 57
+ ++ G V++GD+N + ++ G + Q
Sbjct: 145 LARSVEDGRHAVLSGDWNIAHTENDIKNWKGNVKKAGFLPQERQWLTELLGTGWVDVVRQ 204
Query: 58 EKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
R K+ + D + + + + + S HCP
Sbjct: 205 AHPDVAGPYAWWSWRGKAFDNDAGWRIDYQLATPGLAGRVAAVTTERPAAYALRWSDHCP 264
Query: 114 LTIEY 118
+T+ Y
Sbjct: 265 VTVHY 269
>gi|312194022|ref|YP_004014083.1| endonuclease/exonuclease/phosphatase [Frankia sp. EuI1c]
gi|311225358|gb|ADP78213.1| Endonuclease/exonuclease/phosphatase [Frankia sp. EuI1c]
Length = 324
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 31/117 (26%), Gaps = 13/117 (11%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
L + T +P V+AGDFN + + + +
Sbjct: 221 QLADLRREVRATTLPVVLAGDFNATRDMRPFRNVLAAGVTDAHDDVHA--------GWAP 272
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ + LI F+ L +S S H PL + +
Sbjct: 273 TWNAHFPILPPVWRLDHVLISPQFTAT-----GLRVGKSYGSDHLPLVADLALRPSS 324
>gi|84625788|ref|YP_453160.1| nuclease [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|84369728|dbj|BAE70886.1| nuclease [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 572
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 32/126 (25%), Gaps = 12/126 (9%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L +W D V+ GDFN + + Q
Sbjct: 450 ESAKGLHEWLQTDPTGAQTKRAVLVGDFNAYAMEMPMRSLRASGWQDAFAVAGVKQP--- 506
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPL 114
V D+ ++ L ++ D D + S H P+
Sbjct: 507 YSFVYDGMSGRQDHALLSPAMAKQLRGAVEWHINADVMDAAGYAKRNLPGPWRSSDHDPV 566
Query: 115 TIEYDF 120
+ +
Sbjct: 567 LLGFSL 572
>gi|78046289|ref|YP_362464.1| putative secreted protein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78034719|emb|CAJ22364.1| putative secreted protein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 287
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 34/120 (28%), Gaps = 11/120 (9%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + Q + +P V+ GDFN + I + D +
Sbjct: 179 ERSARLILSRIAQ-LPATVPVVLTGDFNSDPDKITY--PTLTAVLRDARAQASKRSGPEN 235
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
D+ ++++ + D S H P+ E+D+ +
Sbjct: 236 T--------FQDFTTHPTRRIDWILYRGLRPTRFATLDDRPGGILPSDHYPVMAEFDWPR 287
>gi|116669682|ref|YP_830615.1| exodeoxyribonuclease III Xth [Arthrobacter sp. FB24]
gi|116609791|gb|ABK02515.1| exodeoxyribonuclease III Xth [Arthrobacter sp. FB24]
Length = 273
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 36/138 (26%), Gaps = 21/138 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMD 47
+ + ++ + K ++ GD N + + F +
Sbjct: 136 RFLDVMENRLPELAKHSDHALVVGDLNVGHTELDIKNWKGNVKRAGFLPEERAYFDRFFG 195
Query: 48 PDGLLIRFPQE-----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
D + +R K+ D + + +S
Sbjct: 196 EDIGWRDVHRGLAGNVDGPYTWWSQRGKAFDTDTGWRIDYHMATPALAAAAISATVDRAP 255
Query: 103 TRRSKLSTHCPLTIEYDF 120
+ ++ S H PL ++Y
Sbjct: 256 SWDTRFSDHAPLVVDYQL 273
>gi|255691864|ref|ZP_05415539.1| transmembrane endonuclease/exonuclease/phosphatase family protein
[Bacteroides finegoldii DSM 17565]
gi|260622589|gb|EEX45460.1| transmembrane endonuclease/exonuclease/phosphatase family protein
[Bacteroides finegoldii DSM 17565]
Length = 378
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 8/116 (6%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + LK+ + P ++ GDFN +S K + + ++
Sbjct: 271 QADVLKQLIA---DSPHPTLVCGDFNSLPSSYVYHTIKGDKKGDKKGNKKGNKLQDGFQT 327
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +F L Y D S H P+ +
Sbjct: 328 SGHGYMYTFKFFKHLLRIDYVLHSPELKSTDYFSPDWSY-----SDHNPVVMRMKL 378
>gi|84515771|ref|ZP_01003132.1| exodeoxyribonuclease III, putative [Loktanella vestfoldensis SKA53]
gi|84510213|gb|EAQ06669.1| exodeoxyribonuclease III, putative [Loktanella vestfoldensis SKA53]
Length = 262
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 27/126 (21%), Gaps = 22/126 (17%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDT----------------DDFWQKMDPDGLLIRFPQEK 59
++ GD N D F Q MD G + Q+
Sbjct: 138 HASRPQKSILVGDLNIAPREDDVWNHKALLKVVSHTPIEVDHFGQVMDAGGWVDVTRQDI 197
Query: 60 ES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPL 114
R+ D R + + K S H P+
Sbjct: 198 PQGNLYSWWSYRSPDW-DAADKGRRLDHVWATPDISGAAHGSRVLRHVRGWDKPSDHAPV 256
Query: 115 TIEYDF 120
+D
Sbjct: 257 FASFDL 262
>gi|242309877|ref|ZP_04809032.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
gi|239523878|gb|EEQ63744.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
Length = 256
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 30/124 (24%), Gaps = 23/124 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+ ++ P ++ GD N I + + + F
Sbjct: 135 KNLEVTKPVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEEREKMSVLLDSGFTDTFRYFH 194
Query: 57 QE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + K+ + D + S S HCP+
Sbjct: 195 PTLEGAYSWWSYMGKARENNTGWRIDYFLCSKALDSKLKSASIYPEIFG----SDHCPVG 250
Query: 116 IEYD 119
+E +
Sbjct: 251 LEIN 254
>gi|261337556|ref|ZP_05965440.1| exodeoxyribonuclease III [Bifidobacterium gallicum DSM 20093]
gi|270277965|gb|EFA23819.1| exodeoxyribonuclease III [Bifidobacterium gallicum DSM 20093]
Length = 286
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 41/139 (29%), Gaps = 20/139 (14%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------ 48
ML E + D+ G +I GDFN + D +
Sbjct: 147 MLDAIMERAAQLRDEAAHGGKQSLIVGDFNIAHTDLDIKDATTNETHSGFSPKERAYITK 206
Query: 49 --------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
D + + R ++ + D + + + + ++ S
Sbjct: 207 LIDEYEFVDVVRDLAGDIQGPYTWWSNRGRAFENNVGWRIDYQFATPEIAQTARGFEISR 266
Query: 101 LDTRRSKLSTHCPLTIEYD 119
++ S H PLT+ YD
Sbjct: 267 AKAWYARWSDHAPLTVTYD 285
>gi|307566177|ref|ZP_07628632.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
amnii CRIS 21A-A]
gi|307345142|gb|EFN90524.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
amnii CRIS 21A-A]
Length = 365
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 29/116 (25%), Gaps = 17/116 (14%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + + + IP ++ GDFN S + ++ + +
Sbjct: 263 QADAVATFVKKHLDKNIPVILCGDFNDNPISYSYYTI-SKVLNDS------YKSSGNGIG 315
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + N F S H P+ +
Sbjct: 316 WTYNENR------MYFRIDHIFASNEFEPYGAKVDKSIKN----SDHYPIYCWLKY 361
>gi|282855380|ref|ZP_06264703.1| exodeoxyribonuclease III [Pyramidobacter piscolens W5455]
gi|282586760|gb|EFB92005.1| exodeoxyribonuclease III [Pyramidobacter piscolens W5455]
Length = 307
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/136 (11%), Positives = 29/136 (21%), Gaps = 25/136 (18%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK---------------- 45
L + + + GD N + T+ +K
Sbjct: 176 LRRTAALIAAR------KDEKLLWTGDLNVAPTELDVTNPANKKDHVCFVKELRDLFAEL 229
Query: 46 --MDPDGLLIRFPQEKESTCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
LL +E R + D+ + +
Sbjct: 230 CAPLVVDLLRVHHPGEELYSFFDYRIKNALERRIGWRIDHMLATPALAGQSRACWIDTEP 289
Query: 103 TRRSKLSTHCPLTIEY 118
K S H P+ ++
Sbjct: 290 RGWEKPSDHTPMLADF 305
>gi|225870288|ref|YP_002746235.1| endonuclease/exonuclease/phosphatase family surface anchored
protein [Streptococcus equi subsp. equi 4047]
gi|225699692|emb|CAW93409.1| endonuclease/exonuclease/phosphatase family surface anchored
protein [Streptococcus equi subsp. equi 4047]
Length = 926
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 7/118 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L ++ + V+ GDFN + + L+ + +
Sbjct: 753 ARLLSQFTKEGASQQANIVMLGDFNDYEFTKTIK---LIEEGDMANLVSRHELSDRYSYF 809
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ R+ + S + S H PL ++ F K
Sbjct: 810 YRGNNQTLDNMLVSRNLLGRYEFDMVH----VNSPFMEAHGRASDHDPLLLQLSFGKD 863
>gi|195977910|ref|YP_002123154.1| extracellular nuclease [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|195974615|gb|ACG62141.1| extracellular nuclease [Streptococcus equi subsp. zooepidemicus
MGCS10565]
Length = 926
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 7/118 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L ++ + V+ GDFN + + L+ + +
Sbjct: 753 ARLLSQFTKEGASQQANIVMLGDFNDYEFTKTIK---LIEEGDMANLVSRHELSDRYSYF 809
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ R+ + S + S H PL ++ F K
Sbjct: 810 YRGNNQTLDNMLVSRNLLGRYEFDMVH----VNSPFMEAHGRASDHDPLLLQLSFGKD 863
>gi|225351376|ref|ZP_03742399.1| hypothetical protein BIFPSEUDO_02970 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157720|gb|EEG71003.1| hypothetical protein BIFPSEUDO_02970 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 286
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 39/132 (29%), Gaps = 20/132 (15%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------- 48
+++ D+ G V+ GDFN + + +
Sbjct: 154 RMEQLRDEAAHGGKQAVLCGDFNIAHTPLDIKNAKANETHAGFLPEERAYVDKWLGELEF 213
Query: 49 -DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D + + +R ++ + D + + + + + T +
Sbjct: 214 VDVMRNLAGDIQGPYTWWSQRGRAFDNNVGWRIDYQFATPELAETACGFVIDKAPTYDLR 273
Query: 108 LSTHCPLTIEYD 119
S H PL+I YD
Sbjct: 274 WSDHAPLSIMYD 285
>gi|262370848|ref|ZP_06064172.1| catabolite repression control protein [Acinetobacter johnsonii
SH046]
gi|262314210|gb|EEY95253.1| catabolite repression control protein [Acinetobacter johnsonii
SH046]
Length = 272
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 30/128 (23%), Gaps = 23/128 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDG 50
K+ Q ++ GD+N I + + ++
Sbjct: 147 KQILKQWRDENKSVIVCGDYNIVHKRIDIKNWSGNQKASGCLPHERSWLDHIYDELGYVD 206
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
E E R ++ + + + + S
Sbjct: 207 TFREVRPEAELYSWWSNRGQARAKNVGW--RIDYQACSPDWKA--RTVNAWVYKETWFSD 262
Query: 111 HCPLTIEY 118
H P+ I+Y
Sbjct: 263 HAPVIIDY 270
>gi|313682316|ref|YP_004060054.1| exodeoxyribonuclease iii [Sulfuricurvum kujiense DSM 16994]
gi|313155176|gb|ADR33854.1| exodeoxyribonuclease III [Sulfuricurvum kujiense DSM 16994]
Length = 258
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 31/131 (23%), Gaps = 23/131 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + + G +I GD N I + +
Sbjct: 130 ERFLDYCEALRREGKKIIICGDVNTAHRPIDLKNPKSNEKTSGFLPIERDWIDKLLSHGY 189
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+KE+ R + F I + + + +
Sbjct: 190 IDTFRHVHGDKENEYSWWSYRFSARSKNVGW--RIDYFFISDDLAESL--EDAFILQEIM 245
Query: 108 LSTHCPLTIEY 118
S HCP+ I
Sbjct: 246 GSDHCPVGIRL 256
>gi|225018561|ref|ZP_03707753.1| hypothetical protein CLOSTMETH_02510 [Clostridium methylpentosum
DSM 5476]
gi|224948663|gb|EEG29872.1| hypothetical protein CLOSTMETH_02510 [Clostridium methylpentosum
DSM 5476]
Length = 300
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 29/120 (24%), Gaps = 4/120 (3%)
Query: 3 SQQGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + K+ P ++ GDFN K S + L F S
Sbjct: 179 KLSAQTILKYIRDYNSKDPLPVILTGDFNAKPYSKAIK-MLITSNEYVSLNNIFTAFDIS 237
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ D + N F + + S H P+ +
Sbjct: 238 DTYIN-TYHGFSD-RLSKYPIDYIFFSNDFVVNDFQILKNKPNGEYPSDHFPILARLQIQ 295
>gi|163752163|ref|ZP_02159367.1| extracellular nuclease, putative [Shewanella benthica KT99]
gi|161327940|gb|EDP99116.1| extracellular nuclease, putative [Shewanella benthica KT99]
Length = 559
Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 39/139 (28%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ E + W + ++ GD N T L +E +
Sbjct: 266 RAAEAVSLWLAAEYGE-ADVLVMGDLNAYAEENPLTALKNAGFTE--LFDHLDKE-NAYS 321
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDTRRS 106
V LD+ + + + + + ++ Y+Q +
Sbjct: 322 YVYSGESGQLDHALANANLLDKIIDVTEWHINTDEPRLLDYNQEFKSDAQLTDLYNADAY 381
Query: 107 KLSTHCPLTIEYDFEKGNV 125
+ S H P+ I + N+
Sbjct: 382 RSSDHDPVVISVLLGEDNI 400
>gi|159490968|ref|XP_001703445.1| hypothetical protein CHLREDRAFT_143864 [Chlamydomonas reinhardtii]
gi|158280369|gb|EDP06127.1| predicted protein [Chlamydomonas reinhardtii]
Length = 437
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/148 (11%), Positives = 25/148 (16%), Gaps = 40/148 (27%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------------------FWQKMD 47
+ G P V+ GD N I +
Sbjct: 285 AFAAFLQGLQARGKPVVVTGDLNCAHKEIDIHAPKTNLKSAGFTPEERESFGRLLLAEAG 344
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--------- 98
R + + +R FL S Q
Sbjct: 345 LADTFRRLYPDTVAYTYFTRRFNCREKNKGW--RLDYFLTSESMMPPELQQGGEGAAAAA 402
Query: 99 ---------SDLDTRRSKLSTHCPLTIE 117
+ S H PL +
Sbjct: 403 GPASAWAVYDTWIMQDVYGSDHLPLGLT 430
>gi|308273030|emb|CBX29634.1| hypothetical protein N47_J06150 [uncultured Desulfobacterium sp.]
Length = 273
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 8/119 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + ++K + K G P ++ GDFN +S G ++F K+D
Sbjct: 161 KSAKLIRKRLRRHSKKG-PIILMGDFNATPDS-GCYNEFTSKVDAYPKFFDAFNNSAI-- 216
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
R L + I + S H PL + F
Sbjct: 217 ----RTCHRFSGKNKGEAIDWILYSGNLIIDNSQVITSKFSGRYPSDHYPLIASFVFPS 271
>gi|296124108|ref|YP_003631886.1| endonuclease/exonuclease/phosphatase [Planctomyces limnophilus DSM
3776]
gi|296016448|gb|ADG69687.1| Endonuclease/exonuclease/phosphatase [Planctomyces limnophilus DSM
3776]
Length = 387
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 11/120 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
M S++ + L+ + + + G+P ++ GDFN S + W +
Sbjct: 275 MRSEEMQQLRHFI-ENARNGLPLIVVGDFN-TPASSHVFQEAWGDLTGGFETAAIGPSHT 332
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ C R S + + + + T S H + E +
Sbjct: 333 APC----RPISFWPGTWPWSRIDHIRVTPEWKFHQFV-----TGDRNGSDHRLVACELEL 383
>gi|241761646|ref|ZP_04759733.1| exodeoxyribonuclease III Xth [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|241373954|gb|EER63487.1| exodeoxyribonuclease III Xth [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 261
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 20/133 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSI-----------------GDTDDFWQKMDPD 49
+ A + ++AGD+N + D+ +W+++
Sbjct: 126 KAFLAHARSLWQQEKSVILAGDYNVVPSFDIKDIRNAAALADNALLAPDSLFYWRQLLAM 185
Query: 50 GLL---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
G + + +S + D+ D + + +
Sbjct: 186 GWTDSLRVRHPSEPLYSFWDYQAQSWPRDDGMRIDHILLTPDLADGLTDSGVDRQMRGQE 245
Query: 107 KLSTHCPLTIEYD 119
K S H P+ IE D
Sbjct: 246 KASDHAPVWIEID 258
>gi|282880539|ref|ZP_06289246.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
timonensis CRIS 5C-B1]
gi|281305642|gb|EFA97695.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
timonensis CRIS 5C-B1]
Length = 361
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 33/115 (28%), Gaps = 19/115 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ +Q ++ GDFN NS F ++ L + E +
Sbjct: 262 QAKAVAQYIEQHQDKT--IILCGDFNDGPNS------FARRTIAKHLRDCYI-ETGNGPG 312
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + + K S H P+ +
Sbjct: 313 ISYHLGGFY------VRIDQLMCSKNLKPYHCQVDN----KIKTSDHYPIYCWLE 357
>gi|262199576|ref|YP_003270785.1| exodeoxyribonuclease III Xth [Haliangium ochraceum DSM 14365]
gi|262082923|gb|ACY18892.1| exodeoxyribonuclease III Xth [Haliangium ochraceum DSM 14365]
Length = 301
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 27/129 (20%), Gaps = 18/129 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------QKMDPDG 50
L G ++ GDFN I + +
Sbjct: 163 RALFDALGALRDAGQRVLVMGDFNTAHRDIDLARPKQNRKTSGFLPEERAELDRWVAAGW 222
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ E ++ + I + +S + S
Sbjct: 223 VDTFRHFEPGPGHYTWWSQRAGVRARNIGWRIDYVFACPEAM--PFVRSAFLMPQVGGSD 280
Query: 111 HCPLTIEYD 119
HCP + D
Sbjct: 281 HCPHGVVLD 289
>gi|162329921|pdb|2O3C|A Chain A, Crystal Structure Of Zebrafish Ape
gi|162329922|pdb|2O3C|B Chain B, Crystal Structure Of Zebrafish Ape
gi|162329923|pdb|2O3C|C Chain C, Crystal Structure Of Zebrafish Ape
Length = 282
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 19/117 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQ--EK 59
+ P V+ GD N I + + ++ G F +
Sbjct: 164 LDARKPLVLCGDLNVAHQEIDLKNPKGNRKNAGFTPEEREGFTQLLEAGFTDSFRELYPD 223
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ + + F++ ++ + S HCP+T+
Sbjct: 224 QAYAYTFWTYMMNARSKNVGWRLDYFVLSSALLPGLC--DSKIRNTAMGSDHCPITL 278
>gi|304310166|ref|YP_003809764.1| Exodeoxyribonuclease III [gamma proteobacterium HdN1]
gi|301795899|emb|CBL44100.1| Exodeoxyribonuclease III [gamma proteobacterium HdN1]
Length = 277
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 31/126 (24%), Gaps = 23/126 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLI 53
+ G +++ GD+N +I + + +
Sbjct: 152 MKAWREDGRRYILCGDWNIAHKNIDIKNWRSNQKNSGFLPEERAWLDRVFDEQGWVDAFR 211
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
E + R ++ ++ S + + S H P
Sbjct: 212 AVNSEADQYTWWSNRGQAWAKNVGW--RIDYQIVSPELRDTIS--STEIYKDERFSDHAP 267
Query: 114 LTIEYD 119
L + YD
Sbjct: 268 LLMSYD 273
>gi|294627625|ref|ZP_06706207.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294666886|ref|ZP_06732117.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292597977|gb|EFF42132.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292603334|gb|EFF46754.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 287
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 11/120 (9%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + Q + IP V+ GDFN + I + D +
Sbjct: 179 ERSARLILSRIAQ-LPATIPVVLTGDFNSDPDKITY--PTLTAVLRDARAQASKRSGPEN 235
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
D+ ++++ + D S H P+ E+D+ +
Sbjct: 236 T--------FQDFTTHPTRRIDWILYRGLRPSRFATLDDRPGGILPSDHYPVMAEFDWPR 287
>gi|147898516|ref|NP_001079795.1| hypothetical protein LOC379485 [Xenopus laevis]
gi|32450236|gb|AAH54251.1| MGC64462 protein [Xenopus laevis]
Length = 345
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 4/118 (3%)
Query: 5 QGEWLKK-WADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L W D K + +I GD+N + + ++ L+ +KE T
Sbjct: 154 EVDALYDAWVDAKQRLKMENILILGDYNAACSYVASRHWPIIRLRHVEELVWLIGDKEDT 213
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEY 118
N + + + ++ ++ +Y + T +S H P+ +E
Sbjct: 214 TVSTNTNCAYDRMVAGGEELQRGIVPDTAKAFNYHVAYDLTYEMAKAVSDHYPVEVEL 271
>gi|264676398|ref|YP_003276304.1| exodeoxyribonuclease III Xth [Comamonas testosteroni CNB-2]
gi|262206910|gb|ACY31008.1| exodeoxyribonuclease III Xth [Comamonas testosteroni CNB-2]
Length = 267
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 25/128 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-----------------------GLL 52
+K FV+ GD N + + + +
Sbjct: 140 HLKAERDFVLCGDINIAHQKEDLKNWRGNQKNSGFLPEERDWMSKLLHKTEAGGGLVDVY 199
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + C N+ + L + + ++ +S + K S H
Sbjct: 200 RQLQPDTTDACYTWWSNRGQAYANNVGWRLDYHLATPAIAALARTESIY--KGEKFSDHA 257
Query: 113 PLTIEYDF 120
P+TI YD
Sbjct: 258 PITIGYDM 265
>gi|192288715|ref|YP_001989320.1| exodeoxyribonuclease III Xth [Rhodopseudomonas palustris TIE-1]
gi|192282464|gb|ACE98844.1| exodeoxyribonuclease III Xth [Rhodopseudomonas palustris TIE-1]
Length = 270
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 10/127 (7%), Positives = 29/127 (22%), Gaps = 23/127 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDGLLIRFPQ-- 57
++ GD N + + + +
Sbjct: 145 HPSGDQRHILVGDLNVAPHEHDVWSHKQLLKVVSHTPVECEKLLAVLRAGNWVDVARERI 204
Query: 58 --EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCP 113
+++ R + R + + + +V + + S H P
Sbjct: 205 PLDQKVYTWWSYR-AADWTVGDRGRRLDHIWVSEALKDRVVDFKVLRDARSWERPSDHVP 263
Query: 114 LTIEYDF 120
+T+ +
Sbjct: 264 VTMTMEL 270
>gi|145349696|ref|XP_001419264.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579495|gb|ABO97557.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 249
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 36/129 (27%), Gaps = 13/129 (10%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKIN---SIGDTDDF------WQKMDPDGLLIRF 55
Q E L+ A + G ++AGD N + G+ + + DG+
Sbjct: 89 QVEVLRAIAQARYDAGDAVIVAGDLNDYSDRHVDAGNNSPTSKVLKRLRDFNDDGVDELE 148
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+S L + V D S +S H PL
Sbjct: 149 EVGGRIAQVSRYTWQSGS----SKAKLDYILTSRADIEVVSAAIRHDLVTSSVSDHFPLV 204
Query: 116 IEYDFEKGN 124
D + N
Sbjct: 205 ATLDIKPRN 213
>gi|226310908|ref|YP_002770802.1| hypothetical protein BBR47_13210 [Brevibacillus brevis NBRC 100599]
gi|226093856|dbj|BAH42298.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 1829
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 9/118 (7%)
Query: 6 GEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L + + + V+ GD N S + + ++ + E
Sbjct: 1160 ARVLNSFVKEIHSAQAKANVVVLGDLNDFPFSNPVQELADGVL---TNMVEKLPKGEQYT 1216
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
V + N LD ++ ++ + I + L ++S H P+ ++ D +
Sbjct: 1217 YVYQGNSQVLDQILVSNHLEDDTKVDIVHI----NAGLTENEGRVSDHNPVLVQLDLK 1270
>gi|39933358|ref|NP_945634.1| exodeoxyribonuclease III [Rhodopseudomonas palustris CGA009]
gi|39652983|emb|CAE25725.1| possible exodeoxyribonuclease III [Rhodopseudomonas palustris
CGA009]
Length = 270
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 10/127 (7%), Positives = 29/127 (22%), Gaps = 23/127 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDGLLIRFPQ-- 57
++ GD N + + + +
Sbjct: 145 HPSGDQRHILVGDLNVAPHEHDVWSHKQLLKVVSHTPVECEKLLAVLRAGNWVDVARERI 204
Query: 58 --EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCP 113
+++ R + R + + + +V + + S H P
Sbjct: 205 PLDQKVYTWWSYR-AADWTVGDRGRRLDHIWVSEALKDRVVDFKVLRDARSWERPSDHVP 263
Query: 114 LTIEYDF 120
+T+ +
Sbjct: 264 VTMTMEL 270
>gi|229818864|ref|YP_002880390.1| 5'-Nucleotidase domain protein [Beutenbergia cavernae DSM 12333]
gi|229564777|gb|ACQ78628.1| 5'-Nucleotidase domain protein [Beutenbergia cavernae DSM 12333]
Length = 1577
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 36/128 (28%), Gaps = 18/128 (14%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L+ W Q + GDFN + D + + + +
Sbjct: 708 QATALRDWVGQVAAADDAVALLGDFNSYGQEDPLHVLY----DAGYTDVEAHFDVDGSSY 763
Query: 65 VIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSD------LDTRRSKLST 110
R SLD+ +++ + + Y + + D + S
Sbjct: 764 SFGRQSGSLDHVLLNAPALARATGADIWEINSGEAVALEYSRHNYHGTLFYDATAYRSSD 823
Query: 111 HCPLTIEY 118
H P+ +
Sbjct: 824 HDPVLVGL 831
>gi|157737072|ref|YP_001489755.1| exodeoxyribonuclease [Arcobacter butzleri RM4018]
gi|157698926|gb|ABV67086.1| exodeoxyribonuclease [Arcobacter butzleri RM4018]
Length = 262
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 29/126 (23%), Gaps = 23/126 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRF 55
+ K G ++ GD N I +
Sbjct: 141 ENLKKDGKSIIVCGDVNTAHTEIDIARPKANENTSGFLQMERDWITKFLSHGYIDTFRLI 200
Query: 56 PQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ + R + + F + + Y + + S HCP+
Sbjct: 201 NGDIKDKYSWWSYRANARANNVGW--RIDYFYVSSDLK--DYVKDAYILDNIEGSDHCPI 256
Query: 115 TIEYDF 120
+E +
Sbjct: 257 GLEMEL 262
>gi|110798703|ref|YP_695757.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens ATCC 13124]
gi|110673350|gb|ABG82337.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens ATCC 13124]
Length = 262
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 4/100 (4%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P++I GDFN + ++ + + + K + K D
Sbjct: 167 PYIIMGDFNCYLEDNIFNIIREEETNNTCFNVCYDNIKNNILGTFHYFKGGYDGR----I 222
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
L I S + D S H P+ E + +
Sbjct: 223 IDYILYSKECEIKSLNIDDRKINGGYPSDHYPVICELELK 262
>gi|86141529|ref|ZP_01060075.1| hypothetical protein MED217_05907 [Leeuwenhoekiella blandensis
MED217]
gi|85832088|gb|EAQ50543.1| hypothetical protein MED217_05907 [Leeuwenhoekiella blandensis
MED217]
Length = 285
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 28/116 (24%), Gaps = 4/116 (3%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
L + + I P ++ GDFN + + L + Q
Sbjct: 171 SAALLTQKIKE-ITGTSPVLLTGDFNSSPKTEAIATLLSSGLKDPYLNLDADQ---IYGP 226
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
N D ++ D +S H P+ + +
Sbjct: 227 EYSANGWDATGRTSDSRIDYIFYSGGVQPLTLQILDGQRGERYISDHFPVIAKVEL 282
>gi|282878202|ref|ZP_06286998.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
buccalis ATCC 35310]
gi|281299620|gb|EFA91993.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
buccalis ATCC 35310]
Length = 305
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 38/144 (26%), Gaps = 29/144 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + + + + P ++ GDFN + + D + E+
Sbjct: 167 REAAKLVVRKIKEIAGSNAPVILTGDFNVDQHDEIYQIFTQSGLLKDSYTAARMRFAENG 226
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL--------------------- 101
+ + D + + N F + Y
Sbjct: 227 T-----FQGFKSSLLTDSRIDHVFVSNKFQVNQYGILTNGYWTEGTSREVSKEGAAPQEL 281
Query: 102 ---DTRRSKLSTHCPLTIEYDFEK 122
S H P+ ++ +++K
Sbjct: 282 NFRQYVHRLPSDHYPVMVKLNYQK 305
>gi|220915579|ref|YP_002490883.1| exodeoxyribonuclease III Xth [Anaeromyxobacter dehalogenans 2CP-1]
gi|219953433|gb|ACL63817.1| exodeoxyribonuclease III Xth [Anaeromyxobacter dehalogenans 2CP-1]
Length = 264
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 33/134 (24%), Gaps = 23/134 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------------DDFWQKMDP 48
+ E ++++A +G V+ GD N + ++++
Sbjct: 118 RFLEAMERFAADAQASGRRLVLCGDLNVARTDLDVHPKERKAGAIGQLPEERALFERILS 177
Query: 49 DGLLI----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
GL+ P + D + S
Sbjct: 178 RGLVDVGRALDPANEGLFTWWAPWRNLRQRNIGWRIDYVLASASLAASATRCRV----LA 233
Query: 105 RSKLSTHCPLTIEY 118
S H P+ E+
Sbjct: 234 DFGTSDHAPVVAEF 247
>gi|189464427|ref|ZP_03013212.1| hypothetical protein BACINT_00769 [Bacteroides intestinalis DSM
17393]
gi|189438217|gb|EDV07202.1| hypothetical protein BACINT_00769 [Bacteroides intestinalis DSM
17393]
Length = 277
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/107 (12%), Positives = 22/107 (20%), Gaps = 5/107 (4%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++ +P +I GDFN M +
Sbjct: 176 KETAPHMPAIITGDFNCTPGEAPLQTLEKGGMKNTSKVATVMYGP---SWSFHDFGRLP- 231
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N Y LS H P+ + +
Sbjct: 232 -MEKRVLLDYVFVTNGTKTDRYRVIQDTPENGFLSDHNPVLVNITLQ 277
>gi|291615489|ref|YP_003522597.1| Endonuclease/exonuclease/phosphatase [Nitrosococcus halophilus Nc4]
gi|291582551|gb|ADE17007.1| Endonuclease/exonuclease/phosphatase [Nitrosococcus halophilus Nc4]
Length = 396
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 33/119 (27%), Gaps = 9/119 (7%)
Query: 3 SQQGEWLKK---WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
++ L W ++++ G P ++ GDFN S G D K
Sbjct: 157 RREARQLDDYVNWLEEEVAEGDPVILTGDFNLPPESAGFRDLARVLKPAIREGASTLSAK 216
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
E R + D D + R +S H P+ I
Sbjct: 217 EG------RYANLYDNIWYRPDALKIQETRIDRFPQRLGISHNLARKTVSDHAPVVIAL 269
>gi|327312514|ref|YP_004327951.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
denticola F0289]
gi|326944378|gb|AEA20263.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
denticola F0289]
Length = 290
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 10/125 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + Q + P ++ GDFN + D + +
Sbjct: 167 RESTRLILQRIGQ-LAKSQPTILTGDFNVDQTDEIYGIFSRSAILRDCYAHARQRMAPTG 225
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR----RSKLSTHCPLTIEY 118
+ + + + + F I Y R +S H P+ ++
Sbjct: 226 TW-----NDFMQDSRSNARIDHVFVSSDFDIQHYAIFTNSYWFGKSRRNISDHYPVMVKL 280
Query: 119 DFEKG 123
F +G
Sbjct: 281 SFSRG 285
>gi|313232077|emb|CBY09188.1| unnamed protein product [Oikopleura dioica]
Length = 392
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 36/132 (27%), Gaps = 22/132 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ-------------------KMDPD 49
L+ + K+ P + GD N +I +D ++
Sbjct: 264 LRNYL-TKLNKDKPVIYCGDLNVAHTAIDLKNDKSNYNKSAGYTQAEIDELEKLLELGYV 322
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ +E C + FL+ + + + + S
Sbjct: 323 DAYRKLYPAEE-DCYTFWSYMGGARSKNVGWRLDYFLMKIKDCEEWIE-DVVVHSKVQGS 380
Query: 110 THCPLTIEYDFE 121
HCP+ I+ +
Sbjct: 381 DHCPVEIKLNLP 392
>gi|313158021|gb|EFR57427.1| endonuclease/exonuclease/phosphatase family protein [Alistipes sp.
HGB5]
Length = 279
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/102 (13%), Positives = 27/102 (26%), Gaps = 4/102 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ + G P ++ GDFN + S + D I + +
Sbjct: 176 ETLSGGRPVILTGDFNSEPGSSVVAHVQKDGVLRDAKAIAAQRSGTDWSFSDFGQIPEAE 235
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + V Y+ +S H P+
Sbjct: 236 RPL----LDYIFVSGDIEAVRYEVLPDTFDGGYVSDHAPVMA 273
>gi|222087552|ref|YP_002546089.1| exodeoxyribonuclease III [Agrobacterium radiobacter K84]
gi|221725000|gb|ACM28156.1| exodeoxyribonuclease III [Agrobacterium radiobacter K84]
Length = 267
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 28/132 (21%), Gaps = 23/132 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDG 50
K + ++ GD N + D
Sbjct: 137 KHLHANAEQNTSAILVGDLNIAPLEHDVWSHKQLLKIVSHTPVETDGLLEVMKRGAWLDL 196
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKL 108
+ P ++ R K R + + + D +
Sbjct: 197 MRQHVPANEKLYTWWSYRAKDWE-VADRGRRLDHIWSSSDLGPLLQRIDILKAARGWDRP 255
Query: 109 STHCPLTIEYDF 120
S H P+T ++
Sbjct: 256 SDHVPVTAHFNL 267
>gi|158421717|ref|YP_001523009.1| exodeoxyribonuclease III protein [Azorhizobium caulinodans ORS 571]
gi|158328606|dbj|BAF86091.1| exodeoxyribonuclease III protein [Azorhizobium caulinodans ORS 571]
Length = 290
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 35/139 (25%), Gaps = 22/139 (15%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKM 46
L + W +K + G ++ GD N + D +
Sbjct: 152 LDEAIAW-EKLTEAGRPAGAHAILVGDLNIAPLETDVWNHKQLLSVVSHTPVEVDLLTRF 210
Query: 47 DPDGLLIRFPQE-----KESTCNVIKRNKSSLDY-FVIDRDNKNFLIDNSFSIVSYDQSD 100
G I +E ++ R+ D+ + +
Sbjct: 211 QAAGPWIDVMREFVPPTEKLFTWWSYRSPDHTVNDRGRRLDHVWTSRSLAGKAKAMTVLK 270
Query: 101 LDTRRSKLSTHCPLTIEYD 119
K S H P+ + ++
Sbjct: 271 EARSWEKPSDHVPVAVTFE 289
>gi|148272146|ref|YP_001221707.1| putative exonuclease III [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147830076|emb|CAN01005.1| putative exonuclease III [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 281
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/145 (9%), Positives = 33/145 (22%), Gaps = 35/145 (24%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--------------- 53
+++ + V+ GD N + + L
Sbjct: 135 MERRLPEIAAHSELAVVVGDLNVGHRELDIRNWKGNVKRAGFLPRERAYLDRILGARGEE 194
Query: 54 --------------------RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI 93
+ + R K+ + D + + +
Sbjct: 195 ITGVDGSTGPGLGWVDVGRQQAGEVDGPYTWWSWRGKAFDNDTGWRIDYQLATPALAEKV 254
Query: 94 VSYDQSDLDTRRSKLSTHCPLTIEY 118
V Y + + S H P+ ++Y
Sbjct: 255 VGYAVDRAEAYDQRWSDHTPVVVDY 279
>gi|325294131|ref|YP_004279995.1| exodeoxyribonuclease III [Agrobacterium sp. H13-3]
gi|325061984|gb|ADY65675.1| exodeoxyribonuclease III [Agrobacterium sp. H13-3]
Length = 267
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 33/132 (25%), Gaps = 24/132 (18%)
Query: 13 ADQKIKTGIP---FVIAGDFNRKINSIGDT--------------------DDFWQKMDPD 49
G+P ++ GD N D + D
Sbjct: 136 MKALRADGVPGTSSILVGDLNIAPLENDVWSHKQLLKIVSHTPVETDGMLDIMKKGNWLD 195
Query: 50 GLLIRFPQEKESTCNVIKRNKSS-LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + P ++ R K D+ D S+ D ++
Sbjct: 196 LMRLNVPDSEKIYTWWSYRAKDWEAADRGRRLDHIWSSQDLGPSLEKIDILREARGWNRP 255
Query: 109 STHCPLTIEYDF 120
S H P+T + F
Sbjct: 256 SDHVPVTAHFRF 267
>gi|49474726|ref|YP_032768.1| exodeoxyribonuclease III [Bartonella quintana str. Toulouse]
gi|49240230|emb|CAF26700.1| Exodeoxyribonuclease III [Bartonella quintana str. Toulouse]
Length = 269
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 29/132 (21%), Gaps = 23/132 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIR-- 54
+ + ++ GD N G +
Sbjct: 139 IRANQEDDLASLLVGDLNIAPLEDDVWSHQQLLKVVSHTPIETERLQALCCQGGWVDLMR 198
Query: 55 --FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--QSDLDTRRSKLST 110
FP + R + R + + + + ++ S
Sbjct: 199 LHFPPPTKIYTWWSYRARDWAL-ADRGRRLDHIWSSPNLAPFVANLSIFRDARGWNQPSD 257
Query: 111 HCPLTIEYDFEK 122
H P+ +DF +
Sbjct: 258 HVPVQTVFDFSR 269
>gi|301612064|ref|XP_002935555.1| PREDICTED: deoxyribonuclease-1-like isoform 2 [Xenopus (Silurana)
tropicalis]
Length = 350
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 4/118 (3%)
Query: 5 QGEWLKK-WADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L W D K + +I GD+N + + ++ L +KE T
Sbjct: 162 EVDALYDAWVDAKQRLKMENILILGDYNAACSYVAARHWPIIRLRHAEELAWLIGDKEDT 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEY 118
N + + ++ +I + +Y + T +S H P+ +E
Sbjct: 222 TVSTNTNCAYDRMVAGGQQLQSGIIPGTAKAFNYHVAYDLTYEMAKAVSDHYPIEVEL 279
>gi|301612062|ref|XP_002935554.1| PREDICTED: deoxyribonuclease-1-like isoform 1 [Xenopus (Silurana)
tropicalis]
Length = 353
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 4/118 (3%)
Query: 5 QGEWLKK-WADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L W D K + +I GD+N + + ++ L +KE T
Sbjct: 162 EVDALYDAWVDAKQRLKMENILILGDYNAACSYVAARHWPIIRLRHAEELAWLIGDKEDT 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEY 118
N + + ++ +I + +Y + T +S H P+ +E
Sbjct: 222 TVSTNTNCAYDRMVAGGQQLQSGIIPGTAKAFNYHVAYDLTYEMAKAVSDHYPIEVEL 279
>gi|47213945|emb|CAF94476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 20/124 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
+ + + + P V+ GD N I + + ++ G +
Sbjct: 196 RTYLSE-LDVQKPVVLCGDLNVAHQEIDLKNPKGNKKNAGFTAEEREGFGQLLEAGFVDS 254
Query: 55 FPQ--EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
F + ++S + + F++ +S + K S HC
Sbjct: 255 FRELYPEQSHAYSFWTYMMNARDKNVGWRLDYFVLSSSLLPGLC--DSKIRNQVKGSDHC 312
Query: 113 PLTI 116
P+T+
Sbjct: 313 PITL 316
>gi|297564320|ref|YP_003683293.1| Endonuclease/exonuclease/phosphatase [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296848769|gb|ADH70787.1| Endonuclease/exonuclease/phosphatase [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 634
Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 18/116 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + A + + G P V+AGD N + + D W + GLL F +
Sbjct: 533 RRQLREIAEIARRARERGTPVVVAGDLNIEPD-----DPAWGLLTEHGLLDAFRNTRPFP 587
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
D+ + L + D+ S H P+ +
Sbjct: 588 TLPG--------ETGSDQQIDHVLHTGDLAPSDPANPDVP-----HSDHRPVAVTL 630
>gi|325929159|ref|ZP_08190302.1| metal-dependent hydrolase [Xanthomonas perforans 91-118]
gi|325540478|gb|EGD12077.1| metal-dependent hydrolase [Xanthomonas perforans 91-118]
Length = 287
Score = 55.6 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 34/120 (28%), Gaps = 11/120 (9%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + Q + +P V+ GDFN + I + D +
Sbjct: 179 ERSARLILSRIAQ-LPATVPVVLTGDFNSDPDKITY--PTLTAVLRDARAQASKRSGPEN 235
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
D+ ++++ + D S H P+ E+D+ +
Sbjct: 236 T--------FQDFTTHPTRRIDWILYRGLRPTRFATLDDRPGGILPSDHYPVMAEFDWPR 287
>gi|298293365|ref|YP_003695304.1| exodeoxyribonuclease III [Starkeya novella DSM 506]
gi|296929876|gb|ADH90685.1| exodeoxyribonuclease III [Starkeya novella DSM 506]
Length = 272
Score = 55.6 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 28/125 (22%), Gaps = 23/125 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDGLLIRFP 56
V+ GD N D + P
Sbjct: 148 EDPTARSVLVGDLNIAPLETDVWSHKQLLDVVSHTPIEVEKLEKLQAAGRWVDVMRNFVP 207
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCPL 114
++ R + + R + +F+ + + + S H P+
Sbjct: 208 PDERLYTWWSYR-AADWEASNRGRRLDHVWATPAFAPTARAMNVVRAARSWERPSDHVPV 266
Query: 115 TIEYD 119
+ +D
Sbjct: 267 VVTFD 271
>gi|310831095|ref|YP_003969738.1| putative apurinic-apyrimidinic endonuclease 1 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386279|gb|ADO67139.1| putative apurinic-apyrimidinic endonuclease 1 [Cafeteria
roenbergensis virus BV-PW1]
Length = 262
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 11/123 (8%), Positives = 25/123 (20%), Gaps = 23/123 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLIRF 55
++ P +I GD N +I + K++
Sbjct: 143 ANLQKIKPIIICGDLNVANENIDLANPSSNKKNAGFTDVERKSFKLTLTKLNLIDTFRYL 202
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + D + + S H P+
Sbjct: 203 YPTDIKYSFWTYYHNARPKNIGWRIDYFLVSEKLLPKVKDSNILTHIMG----SDHAPVI 258
Query: 116 IEY 118
++
Sbjct: 259 LKL 261
>gi|255264183|ref|ZP_05343525.1| endonuclease/exonuclease/phosphatase [Thalassiobium sp. R2A62]
gi|255106518|gb|EET49192.1| endonuclease/exonuclease/phosphatase [Thalassiobium sp. R2A62]
Length = 341
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 38/142 (26%), Gaps = 26/142 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-----MDPDGLLIRFPQEK 59
Q W+++ DQ + ++ GDFN F + + D + F
Sbjct: 200 QCIWIRQRVDQHLDRKDSVIVLGDFNDGPGLDSYEKLFGRSGVEIVLGEDDPVQLFDPHA 259
Query: 60 E-------STCNVIKRNKSSLDYFVIDRDNKNFLID-------NSFSIVSYDQSDLDTRR 105
+ R + + ++ S+ I +
Sbjct: 260 KMALTQRIGAAPTSSRFFLRHENRYLSALLDYIMVSPDLAELAPSWHIWHPFEDPACWGD 319
Query: 106 S-------KLSTHCPLTIEYDF 120
S H P+T++ +
Sbjct: 320 VELRDALLTASDHFPVTLDIEL 341
>gi|260593422|ref|ZP_05858880.1| AP endonuclease domain protein [Prevotella veroralis F0319]
gi|260534698|gb|EEX17315.1| AP endonuclease domain protein [Prevotella veroralis F0319]
Length = 367
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 31/116 (26%), Gaps = 17/116 (14%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ Q + +P ++ GDFN S + L+ F
Sbjct: 265 QADMVARYVKQYLDKKVPIILCGDFNDNPLSYTHR------VIDKELIDCFVASGNGPGI 318
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + + F + S H P+ +
Sbjct: 319 SYHR-------SGMYFRIDHIFCSDDFEPYDAHVDN----SVTASDHYPIYCWLKY 363
>gi|322390045|ref|ZP_08063581.1| endonuclease/exonuclease/phosphatase [Streptococcus parasanguinis
ATCC 903]
gi|321143252|gb|EFX38694.1| endonuclease/exonuclease/phosphatase [Streptococcus parasanguinis
ATCC 903]
Length = 793
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 9/119 (7%)
Query: 5 QGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + ++ + +K FV+ GDFN S ++ +
Sbjct: 565 QASVIHQFVQEGLKQNPKTTFVLTGDFNDYDFSTTAQILAGNELTNLMAQHDA---GDRY 621
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + LD I + I + + S H P+ ++ DF
Sbjct: 622 SYFYRGSNQVLDNIFISNNMAAKARFEPVHI----NASFMKEHGRASDHDPVLVQIDFS 676
>gi|91974922|ref|YP_567581.1| exodeoxyribonuclease III [Rhodopseudomonas palustris BisB5]
gi|91681378|gb|ABE37680.1| exodeoxyribonuclease III [Rhodopseudomonas palustris BisB5]
Length = 352
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 9/127 (7%), Positives = 26/127 (20%), Gaps = 23/127 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPDGLLIRFP 56
++ GD N + + + +
Sbjct: 227 HPSGDARHILVGDLNVAPHEHDVWSHKQLLKVVSHTPVECEKLLAVLRAGNWVDVARDRI 286
Query: 57 Q-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLSTHCP 113
++ R + R + + + + + S H P
Sbjct: 287 PLSEKIYTWWSYR-AADWTVGDRGRRLDHIWVSEALRTRVTDFKILRDARSWERPSDHVP 345
Query: 114 LTIEYDF 120
+T+ +
Sbjct: 346 VTVTMEL 352
>gi|255020174|ref|ZP_05292243.1| Exodeoxyribonuclease III [Acidithiobacillus caldus ATCC 51756]
gi|254970316|gb|EET27809.1| Exodeoxyribonuclease III [Acidithiobacillus caldus ATCC 51756]
Length = 253
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 27/125 (21%), Gaps = 22/125 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGLLIR 54
++ G + GD N + W++
Sbjct: 133 VTALVRRGRSVIFCGDVNTAHTPLDLARPEANRRVSGFLPEERAWLDRWREAGFIDSFRH 192
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
F E+ R+ + D + + HCP+
Sbjct: 193 FHPEERRYSWWSLRSGARERDVGWRLDYFWVHESLLPRLKGAGIATEVRGA----DHCPV 248
Query: 115 TIEYD 119
+E D
Sbjct: 249 WLELD 253
>gi|256851997|ref|ZP_05557384.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260661433|ref|ZP_05862346.1| metal-dependent hydrolase [Lactobacillus jensenii 115-3-CHN]
gi|282931878|ref|ZP_06337357.1| endonuclease/exonuclease/phosphatase family protein [Lactobacillus
jensenii 208-1]
gi|297205131|ref|ZP_06922527.1| endonuclease/exonuclease/phosphatase [Lactobacillus jensenii
JV-V16]
gi|256615409|gb|EEU20599.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260547888|gb|EEX23865.1| metal-dependent hydrolase [Lactobacillus jensenii 115-3-CHN]
gi|281303989|gb|EFA96112.1| endonuclease/exonuclease/phosphatase family protein [Lactobacillus
jensenii 208-1]
gi|297149709|gb|EFH30006.1| endonuclease/exonuclease/phosphatase [Lactobacillus jensenii
JV-V16]
Length = 369
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 17/132 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------TDDFW----QKMDPD 49
+Q L + +IK G + GDFN + D + +
Sbjct: 242 KKQLALLNQVMKAEIKKGNYVICGGDFNHAFGAKYVAHFKSQQKQHDWLAVLSQKDLASS 301
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
G+ + + + + FL+ + VSY+ S
Sbjct: 302 GMKMVTAKNADEVPTCRGSDIPYKKGVTYTTIVDGFLVSPNVKAVSYNIDTQFAY----S 357
Query: 110 THCPLTIEYDFE 121
H P+ + + +
Sbjct: 358 DHNPVKLSFSLK 369
>gi|269127256|ref|YP_003300626.1| endonuclease/exonuclease/phosphatase [Thermomonospora curvata DSM
43183]
gi|268312214|gb|ACY98588.1| Endonuclease/exonuclease/phosphatase [Thermomonospora curvata DSM
43183]
Length = 235
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 27/120 (22%), Gaps = 10/120 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L+ E L + + P V+ GD N + + +
Sbjct: 125 LAHTAELLALLKRARDRYEAPVVLCGDINEEP-EGPSWNALTGFFTDAYAAA---PRGPA 180
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+R +D D + + S H P+ E
Sbjct: 181 ATYSSRRPARRIDGIFTDPRIEVLGCGLPPGPAPAADY------PRASDHLPVLAELRLP 234
>gi|221134816|ref|ZP_03561119.1| endonuclease/exonuclease/phosphatase [Glaciecola sp. HTCC2999]
Length = 321
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 45/118 (38%), Gaps = 4/118 (3%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+QQ L W + + I +V+ GDFN ++++ + + DG
Sbjct: 207 FAQQAPILDAWVETQESEDIQYVLLGDFNHRLSAPYNHLTRQLMTNSDGSESTLYNTTGQ 266
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +D + + N ++ +++ ++ LS HC ++++ +
Sbjct: 267 LIGCHPYYPAPIDLVFVGGMSDNKYDY-TYQAHTFNN---MAPKAMLSDHCAVSLQIE 320
>gi|160885625|ref|ZP_02066628.1| hypothetical protein BACOVA_03628 [Bacteroides ovatus ATCC 8483]
gi|156109247|gb|EDO10992.1| hypothetical protein BACOVA_03628 [Bacteroides ovatus ATCC 8483]
Length = 316
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 33/128 (25%), Gaps = 29/128 (22%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+P ++ GDFN + + D + + +
Sbjct: 190 KELPAILTGDFNVDQTHQSYDAFVSKGVLCDSYEKAGFRYAINGT-----FNNFDPNSFT 244
Query: 79 DRDNKNFLIDNSFSIVSY------------------------DQSDLDTRRSKLSTHCPL 114
+ + + SF + Y + + S H P+
Sbjct: 245 ESRIDHIFVSPSFQVKRYGVLTDTYRSIVGKGEKKQANDCPEEIDIKTYQARTPSDHFPV 304
Query: 115 TIEYDFEK 122
+E +F++
Sbjct: 305 KVELEFDQ 312
>gi|323126982|gb|ADX24279.1| endonuclease/exonuclease/phosphatase family surface anchored
protein [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
Length = 941
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 11/120 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--ESTC 63
L K+A + V+ GDFN + Q ++ + + +
Sbjct: 760 ANMLAKFAKEGATHQANIVMLGDFNDYEFTKTI-----QLIEEGDMANLVSRHDLADRYS 814
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ + + S + S H PL ++ F+K
Sbjct: 815 YFYQGNNQTLDNMLVSHNLLGQYEFDMVH----VNSPFMEVHGRASDHDPLLLQLSFKKA 870
>gi|251782127|ref|YP_002996429.1| extracellular nuclease [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242390756|dbj|BAH81215.1| extracellular nuclease [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 941
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 11/120 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--ESTC 63
L K+A + V+ GDFN + Q ++ + + +
Sbjct: 760 ANMLAKFAKEGATHQANIVMLGDFNDYEFTKTI-----QLIEEGDMANLVSRHDLADRYS 814
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ + + S + S H PL ++ F+K
Sbjct: 815 YFYQGNNQTLDNMLVSHNLLGQYEFDMVH----VNSPFMEVHGRASDHDPLLLQLSFKKA 870
>gi|164688495|ref|ZP_02212523.1| hypothetical protein CLOBAR_02140 [Clostridium bartlettii DSM
16795]
gi|164602908|gb|EDQ96373.1| hypothetical protein CLOBAR_02140 [Clostridium bartlettii DSM
16795]
Length = 252
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 31/120 (25%), Gaps = 23/120 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
K+ + ++ GD N I + + + F
Sbjct: 132 KLNSKKGVIVCGDLNVAHKEIDLKNPKTNRKNAGFTDQEREKFTELLESGFIDTYRHFNP 191
Query: 58 E-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + R K+ D D ++VS D S HCP+ +
Sbjct: 192 DKEGIYSWWSYRFKAREKNAGWRIDYFCASKDLENNLVSADIHTQILG----SDHCPIEL 247
>gi|327537315|gb|EGF24049.1| endonuclease/exonuclease/phosphatase family protein [Rhodopirellula
baltica WH47]
Length = 275
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 5/120 (4%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q G + DQ+ T +P ++ GDFN +S Q + LL +
Sbjct: 160 EQSGRLVAAEVDQR-ATDLPVIVMGDFNAMPDSAPLK--ALQSGEKVKLLDARDEVDGKP 216
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR-RSKLSTHCPLTIEYDFE 121
DR + L+++ + Y D T S H P+ I D +
Sbjct: 217 TGPTGTWNGF-KAIQPDRRIDHVLVNDRVVVQEYRTLDPRTEAGRYASDHLPIAIRIDLK 275
>gi|284047996|ref|YP_003398335.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952217|gb|ADB47020.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 250
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 25/124 (20%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRFPQ---- 57
+ P ++ GD N I + +Q+ G + F
Sbjct: 133 LARKKPVIVCGDLNVAAQPIDLKNPDSNHKNAGFTDEERAKFQQFLDHGFVDSFRSLYPD 192
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
++ + K+ FL+ + Q + S HCP+ E
Sbjct: 193 KEGAYTWWSYMFKARERNAGW--RIDYFLVSQN--GKDRIQDVIIHNEVMGSDHCPV--E 246
Query: 118 YDFE 121
+++
Sbjct: 247 LEWK 250
>gi|58584011|ref|YP_203027.1| nuclease [Xanthomonas oryzae pv. oryzae KACC10331]
gi|58428605|gb|AAW77642.1| nuclease [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 637
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 32/126 (25%), Gaps = 12/126 (9%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L +W D V+ GDFN + + Q
Sbjct: 515 ESAKGLHEWLQTDPTGAQTKRAVLVGDFNAYAMEMPMRSLRASGWQDAFAVAGVKQP--- 571
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPL 114
V D+ ++ L ++ D D + S H P+
Sbjct: 572 YSFVYDGMSGRQDHALLSPAMAKQLRGAVEWHINADVMDAAGYAKRNLPGPWRSSDHDPV 631
Query: 115 TIEYDF 120
+ +
Sbjct: 632 LLGFSL 637
>gi|258543182|ref|YP_003188615.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-01]
gi|256634260|dbj|BAI00236.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-01]
gi|256637320|dbj|BAI03289.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-03]
gi|256640372|dbj|BAI06334.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-07]
gi|256643429|dbj|BAI09384.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-22]
gi|256646484|dbj|BAI12432.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-26]
gi|256649537|dbj|BAI15478.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-32]
gi|256652523|dbj|BAI18457.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256655581|dbj|BAI21508.1| exodeoxyribonuclease III [Acetobacter pasteurianus IFO 3283-12]
Length = 261
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/129 (9%), Positives = 28/129 (21%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGL 51
L A + F +AGD+N I + + +
Sbjct: 125 ALTGRARLLLAEETDFALAGDYNICPAPIDCAPGALGPEDALVRPQSRAAYRRLLWLGLT 184
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLS 109
++ + L+ + + + + + S
Sbjct: 185 DALRALHPTGAAYTFWDYQARAWERDCGLRIDHMLLSPRLAERLQTAEPDRNERAMPRPS 244
Query: 110 THCPLTIEY 118
H P +
Sbjct: 245 DHVPFIVTL 253
>gi|186681878|ref|YP_001865074.1| outer membrane adhesin like proteiin [Nostoc punctiforme PCC 73102]
gi|186464330|gb|ACC80131.1| putative outer membrane adhesin like proteiin [Nostoc punctiforme PCC
73102]
Length = 2156
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 26/140 (18%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L W +++ GD N T + S
Sbjct: 1482 RQAQDLAAWLATKPTGTNDTDYLVVGDLNSYAKEDPLTTLAGAGYNNLL-------PDTS 1534
Query: 62 TCNVIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQ---------SDLDTR 104
V SLD+ + K + + S++ Y+ S +
Sbjct: 1535 YSYVFDGQVGSLDHALATSSLAAQVSGAEKWHINADEPSVLDYNTNFKSAGQISSLYNAD 1594
Query: 105 RSKLSTHCPLTIEYDFEKGN 124
+ + S H P+ + + N
Sbjct: 1595 QFRASDHDPVLVGLNLVSTN 1614
>gi|239813296|ref|YP_002942206.1| exodeoxyribonuclease III Xth [Variovorax paradoxus S110]
gi|239799873|gb|ACS16940.1| exodeoxyribonuclease III Xth [Variovorax paradoxus S110]
Length = 267
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 25/127 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD-----------------------FWQKMDPDGLLI 53
+K F++ GD N I + +
Sbjct: 141 LKKEREFILCGDINIAHKEIDLKNWRGNQKNSGFLPEERAWMTRLLDAGADGAGLVDVYR 200
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ N+ + L + ++ + T K S H P
Sbjct: 201 LLKPDTTGEAYTWWSNRGQAYANNVGWRLDYHLATPALGALARSEQIYKT--IKFSDHAP 258
Query: 114 LTIEYDF 120
+T++YDF
Sbjct: 259 ITVDYDF 265
>gi|220911600|ref|YP_002486909.1| 5'-nucleotidase domain protein [Arthrobacter chlorophenolicus A6]
gi|219858478|gb|ACL38820.1| 5'-Nucleotidase domain protein [Arthrobacter chlorophenolicus A6]
Length = 1512
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 33/135 (24%), Gaps = 16/135 (11%)
Query: 5 QGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L +A Q+ K + GDFN +
Sbjct: 713 QAKSLLDFATSLQQSKGTDKVFLIGDFNSYGKEDPINVLTAAGYVNQDDKAKNADGSAKH 772
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--------------QSDLDTRRSKL 108
+ SLD+ + + ++ + + +
Sbjct: 773 SYLFGGLVGSLDHILASPAANGVVTGADIWNINSVESVALEYSRYNNNVTNYYAPDQFRA 832
Query: 109 STHCPLTIEYDFEKG 123
S H P+ + D +
Sbjct: 833 SDHDPVVVGLDLKSA 847
>gi|302787589|ref|XP_002975564.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
gi|300156565|gb|EFJ23193.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
Length = 306
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 27/118 (22%), Gaps = 23/118 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLIRFP 56
+++ P ++ GD N I D + +
Sbjct: 185 ELEKRKPVIVTGDLNCAHEEIDIYDPDGNKRSAGFTCEERTSFQTNFIDKGLVDTFRKQH 244
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
R+ + FL+ VS + S HCP+
Sbjct: 245 PLAVGFTYWSYRSNARPQNKGW--RLDYFLVSQGL--VSNVADSYVLPQLDGSDHCPI 298
>gi|21241443|ref|NP_641025.1| hypothetical protein XAC0672 [Xanthomonas axonopodis pv. citri str.
306]
gi|21106782|gb|AAM35561.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 287
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 34/120 (28%), Gaps = 11/120 (9%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + Q + IP V+ GDFN + I + D +
Sbjct: 179 ERSARLILSRIAQ-LPATIPVVLTGDFNSDPDKITY--PTLTAVLRDARAQASKRSGPEN 235
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
D+ ++++ + D S H P+ E+++ +
Sbjct: 236 T--------FQDFTTHPTRRIDWILYRGLRPSRFATLDDRPGGILPSDHYPVMAEFEWPR 287
>gi|299533724|ref|ZP_07047096.1| exodeoxyribonuclease III Xth [Comamonas testosteroni S44]
gi|298718273|gb|EFI59258.1| exodeoxyribonuclease III Xth [Comamonas testosteroni S44]
Length = 267
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 25/128 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-----------------------GLL 52
+K FV+ GD N + + + +
Sbjct: 140 HLKAERDFVLCGDINIAHQKEDLKNWRGNQKNSGFLPEERDWMSKLLHKTEASGGLVDVY 199
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + C N+ + L + + ++ +S + K S H
Sbjct: 200 RQLQPDTTDACYTWWSNRGQAYANNVGWRLDYHLATPAIAALARTESIY--KGEKFSDHA 257
Query: 113 PLTIEYDF 120
P+TI YD
Sbjct: 258 PITIGYDM 265
>gi|81428949|ref|YP_395949.1| exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
gi|78610591|emb|CAI55642.1| Exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
Length = 254
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 32/129 (24%), Gaps = 24/129 (18%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------ 49
+ + Q++ T P + GD N +I +D
Sbjct: 125 AFRAYV-QQLGTQKPVIFCGDLNVAHEAIDLKNDRTNHKSAGFSDEERVQMTTLLQSGFT 183
Query: 50 GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F + + R + + D + ++
Sbjct: 184 DTFRYFYPDQTDIYSWWSYRFHARDNNAGWRIDYFITSDELQPKLMDAKIHTEIYG---- 239
Query: 109 STHCPLTIE 117
S HCP+ ++
Sbjct: 240 SDHCPVELD 248
>gi|319948930|ref|ZP_08023037.1| exodeoxyribonuclease III Xth [Dietzia cinnamea P4]
gi|319437410|gb|EFV92423.1| exodeoxyribonuclease III Xth [Dietzia cinnamea P4]
Length = 284
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 22/140 (15%)
Query: 2 LSQQGEWLKKWADQKI-KTGIPFVIAGDFNRKINSIGDT--------------------D 40
L E+L + A + + G +I GD+N D
Sbjct: 145 LKTFREFLAERAAELKSREGHEMIICGDWNIAHREEDLKNHKGNHKSSGFLPHEREWMTD 204
Query: 41 DFWQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
F ++ ++ +R K+ + D + V
Sbjct: 205 VFADGSGWTDIVRHRRPDEVGPYSWWSQRGKAFDNDAGWRIDYQVVSDGLVDRAVKDWVD 264
Query: 100 DLDTRRSKLSTHCPLTIEYD 119
+ + S H P+T+ Y+
Sbjct: 265 RAEAYDMRWSDHAPVTVVYE 284
>gi|327537861|gb|EGF24563.1| endonuclease/exonuclease/phosphatase [Rhodopirellula baltica WH47]
Length = 383
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 30/113 (26%), Gaps = 16/113 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L W + + P VI GD N + L+ + +
Sbjct: 239 LVIWGKELAEDDRPIVIGGDLNDVA-----WSPSTRLFLRLSQLLDPRRGRGFF------ 287
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
N D+ + + + DL S H P+ I+ +
Sbjct: 288 NSFHADHIWMRFPLDHVFHS-----THFGVRDLQRLGHVGSDHFPILIDLQLQ 335
>gi|299538266|ref|ZP_07051551.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|298726468|gb|EFI67058.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
Length = 251
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 34/132 (25%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGL 51
+ L + Q++ P V GD N I + + + G
Sbjct: 124 DRLANYL-QELNCQKPVVYCGDLNVAHTEIDLKNAKSNIGNSGFTYEERAKFSALLESGF 182
Query: 52 LIRF----PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ F P+E + NK D I S
Sbjct: 183 VDSFRYKHPEETDHYTWWSYMNKVRERNIGWRIDYFVVSNQLKEQIESATIHPHIMG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ ++
Sbjct: 240 -SDHCPIELQLQ 250
>gi|169342361|ref|ZP_02863427.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens C str. JGS1495]
gi|169299481|gb|EDS81545.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens C str. JGS1495]
Length = 262
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P++I GDFN + ++ + + + K + K D
Sbjct: 167 PYIIMGDFNCYLEDNLFNIIREEETNNTCFNVCYDNIKNNILGTFHYFKGGYDGK----I 222
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
L + I S + D S H P+ E + +
Sbjct: 223 IDYILYSKEYEIKSLNIDDRKIDGGYPSDHYPVICELELK 262
>gi|290789946|pdb|3G00|A Chain A, Mth0212 In Complex With A 9bp Blunt End Dsdna At 1.7
Angstrom
gi|290789947|pdb|3G00|B Chain B, Mth0212 In Complex With A 9bp Blunt End Dsdna At 1.7
Angstrom
gi|290789951|pdb|3G0R|A Chain A, Complex Of Mth0212 And An 8bp Dsdna With Distorted Ends
gi|290789952|pdb|3G0R|B Chain B, Complex Of Mth0212 And An 8bp Dsdna With Distorted Ends
gi|290789960|pdb|3G2D|A Chain A, Complex Of Mth0212 And A 4 Bp Dsdna With 3'-Overhang
gi|290789961|pdb|3G2D|B Chain B, Complex Of Mth0212 And A 4 Bp Dsdna With 3'-Overhang
gi|290789966|pdb|3G38|A Chain A, The Catalytically Inactive Mutant Mth0212 (D151n) In
Complex With An 8 Bp Dsdna
gi|290789983|pdb|3G8V|A Chain A, The Rationally Designed Catalytically Inactive Mutant
Mth0212(D151n)
gi|290789985|pdb|3GA6|A Chain A, Mth0212 In Complex With Two Dna Helices
gi|290789986|pdb|3GA6|B Chain B, Mth0212 In Complex With Two Dna Helices
Length = 265
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 29/120 (24%), Gaps = 22/120 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD------------------TDDFWQKMDPDGLLIR 54
+++ +G +I G+FN I D + +
Sbjct: 136 VNRERDSGRNVIICGNFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTFRM 195
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
F + R ++ F ++ F S HCP+
Sbjct: 196 FNSDPGQYTWWSYRTRARERNVGW--RLDYFFVNEEFKGKVKR--SWILSDVMGSDHCPI 251
>gi|296137256|ref|YP_003644498.1| Endonuclease/exonuclease/phosphatase [Thiomonas intermedia K12]
gi|295797378|gb|ADG32168.1| Endonuclease/exonuclease/phosphatase [Thiomonas intermedia K12]
Length = 278
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 7/122 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + L + ++ ++AGDFN IG + GL+ ++
Sbjct: 145 QRQTDRLLDYIAARVPAQAALIVAGDFNDWHGRIGPQ------LLQQGLVDVSEPPLKTN 198
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
R + + + + +FS ++LS H PL ++
Sbjct: 199 GKTSWRKRVRTYPARLPLMPLDRIYARAFSASEIG-LGWGRAWARLSDHAPLLASLRCDQ 257
Query: 123 GN 124
+
Sbjct: 258 PD 259
>gi|121592667|ref|YP_984563.1| exodeoxyribonuclease III Xth [Acidovorax sp. JS42]
gi|120604747|gb|ABM40487.1| exodeoxyribonuclease III Xth [Acidovorax sp. JS42]
Length = 267
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 36/129 (27%), Gaps = 25/129 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-----------------------GLL 52
++K F++ GD N I + + + +
Sbjct: 140 RLKAEREFILCGDINIAHQQIDLKNWRSNQKNSGFLPEERAWMTKLLHISDPAGGLVDVY 199
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ E C N+ + L + + ++ + + K S H
Sbjct: 200 RQLQPETTDACYTWWSNRGQAYANNVGWRLDYHLATPAIAALARTEEIY--KAQKFSDHA 257
Query: 113 PLTIEYDFE 121
P+T+ Y+
Sbjct: 258 PITVGYELS 266
>gi|332886426|gb|EGK06670.1| hypothetical protein HMPREF9456_00544 [Dysgonomonas mossii DSM
22836]
Length = 384
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/122 (9%), Positives = 29/122 (23%), Gaps = 19/122 (15%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ Q + ++ D++ ++ GDFN S +
Sbjct: 281 IREAQAKIIRSIIDKQETDA--TIVCGDFNDSPISYAYYTIKGDNLVDS------YANTG 332
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + +F + + S H P+ F
Sbjct: 333 FGQGITYHENKF------WFRIDFIMHSMAFQSYNCTVDKIKY-----SDHYPVWTYLAF 381
Query: 121 EK 122
++
Sbjct: 382 KE 383
>gi|329847403|ref|ZP_08262431.1| exodeoxyribonuclease III [Asticcacaulis biprosthecum C19]
gi|328842466|gb|EGF92035.1| exodeoxyribonuclease III [Asticcacaulis biprosthecum C19]
Length = 265
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 32/136 (23%), Gaps = 24/136 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E L Q+ P +I GD N F D
Sbjct: 130 ERLCTHLAQR-NRDHPLLICGDLNIAPGEFDVWSHRQMLRVVSHTPLEIEAFGNFMACGD 188
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS----FSIVSYDQSDLDT 103
E + S + L++ + + ++ D
Sbjct: 189 FHDPFRVAYPEPQKIFTWWSYRASDYRASNRGLRLDHVLLNPALMARVANLTAKIHDDVR 248
Query: 104 RRSKLSTHCPLTIEYD 119
++ S H P + ++
Sbjct: 249 GWTQPSDHVPAQVTFE 264
>gi|32473147|ref|NP_866141.1| hypothetical protein RB4505 [Rhodopirellula baltica SH 1]
gi|32397826|emb|CAD73827.1| conserved hypothetical protein-putative integral membrane protein
[Rhodopirellula baltica SH 1]
Length = 383
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 30/113 (26%), Gaps = 16/113 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L W + + P VI GD N + L+ + +
Sbjct: 239 LVIWGKELAEDDRPIVIGGDLNDVA-----WSPSTRLFLRLSQLLDPRRGRGFF------ 287
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
N D+ + + + DL S H P+ I+ +
Sbjct: 288 NSFHADHIWMRFPLDHVFHS-----THFGVRDLQRLGHVGSDHFPILIDLQLQ 335
>gi|294141415|ref|YP_003557393.1| extracellular nuclease [Shewanella violacea DSS12]
gi|293327884|dbj|BAJ02615.1| extracellular nuclease, putative [Shewanella violacea DSS12]
Length = 943
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 38/139 (27%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ E + W + + ++ GD N T + L ++ +
Sbjct: 650 RAAEAVGLWLEAEYGE-ADVLVMGDLNAYGQENPLT--ALKNAGFTELFDHLDKD-NAYS 705
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDLDTRRS 106
V LD+ + + + + ++ Y+ +
Sbjct: 706 YVYSGESGQLDHALANVSLLDKIIDVTEWHINTDEPRLLDYNQEFKSDAQLIDLYNADAY 765
Query: 107 KLSTHCPLTIEYDFEKGNV 125
+ S H P+ I N+
Sbjct: 766 RSSDHDPVIISVLLGANNI 784
>gi|94987281|ref|YP_595214.1| exonuclease III [Lawsonia intracellularis PHE/MN1-00]
gi|94731530|emb|CAJ54893.1| Exonuclease III [Lawsonia intracellularis PHE/MN1-00]
Length = 259
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 12/125 (9%), Positives = 27/125 (21%), Gaps = 23/125 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRF 55
++ + P V+ GDFN I +
Sbjct: 138 AEEARKTKPIVVCGDFNTAHRPIDLARPKANEETSGFLPIERTWMDRFIAAGYIDTFRYV 197
Query: 56 PQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ + + ++ F + + S HCP+
Sbjct: 198 HGDIPNNYSWWSYQQRARERNVGW--RIDYFFVSIELMPTIR--DAWIEMDIQGSDHCPV 253
Query: 115 TIEYD 119
+ +
Sbjct: 254 GLTLE 258
>gi|120436892|ref|YP_862578.1| endonuclease/exonuclease/phosphatase family protein [Gramella
forsetii KT0803]
gi|117579042|emb|CAL67511.1| endonuclease/exonuclease/phosphatase family protein [Gramella
forsetii KT0803]
Length = 276
Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 7/118 (5%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + + + + +P + GDFN + S G + +
Sbjct: 165 ESSKLIIQKIKELNREALPVFLMGDFNLEQESEGIRLISEFMEKSKEKADFKFGPEGTF- 223
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ R +N I Y S H P+ I DF+
Sbjct: 224 ------NGYNFTEAVTRRIDYIFTNNQVHIKKYAVLSDSKNLKYPSDHFPVLIIADFK 275
>gi|254509674|ref|ZP_05121741.1| endonuclease/exonuclease/phosphatase family protein
[Rhodobacteraceae bacterium KLH11]
gi|221533385|gb|EEE36373.1| endonuclease/exonuclease/phosphatase family protein
[Rhodobacteraceae bacterium KLH11]
Length = 333
Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 22/138 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-----------------TDDFWQKMD 47
Q WL + + ++ P ++ GD N D +
Sbjct: 196 QAIWLSRRVEALVEAKEPVILLGDLNDGPGLDEFEHLFGRSSVEILLQAGLYDPHAAQAH 255
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSYDQSDLD 102
+ + + + ++ LDY +I D + + +L
Sbjct: 256 GPRPGSVPATARFARPDEGRYLEALLDYIMISTDLRDRHPNWRIWHPFRDTDCWGNPELR 315
Query: 103 TRRSKLSTHCPLTIEYDF 120
S H P+T++ D
Sbjct: 316 EALLTASDHFPVTLDIDL 333
>gi|331006177|ref|ZP_08329501.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC1989]
gi|330420008|gb|EGG94350.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC1989]
Length = 271
Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 33/134 (24%), Gaps = 29/134 (21%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------------------WQK 45
+ F+I GD+N + +
Sbjct: 139 LRSMQRKKREFIICGDWNIAHKKVDIKNWRGNQKNSGFLPEERSWMDWLLNEEDSLRNDN 198
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ QE+ R ++ + ++ SDL +
Sbjct: 199 LQFVDAFRIINQEEHQYTWWSNRGQAWANNTGW--RIDYHIVSKGLRDKVVAGSDLIYKE 256
Query: 106 SKLSTHCPLTIEYD 119
+ S H PL IEYD
Sbjct: 257 ERFSDHAPLAIEYD 270
>gi|260575902|ref|ZP_05843897.1| Endonuclease/exonuclease/phosphatase [Rhodobacter sp. SW2]
gi|259021828|gb|EEW25129.1| Endonuclease/exonuclease/phosphatase [Rhodobacter sp. SW2]
Length = 353
Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 38/144 (26%), Gaps = 28/144 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-----------------------TDD 41
Q WL++ + + G ++ GDFN D
Sbjct: 210 QCVWLRRRVEGHLGAGESLIVLGDFNDGPGLDEYERLFGHSGIEVVLGHDADPALQLYDP 269
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSY 96
+ + + + + ++ LD+ ++ D +
Sbjct: 270 HARMALTQRMGMAATTARFYLAPQKRYFEALLDFIMVSPDLVAAGPDWRIWHPLNDPGCL 329
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
+L S H P+T++
Sbjct: 330 KVPELREALLAASDHFPVTLDLPL 353
>gi|302783529|ref|XP_002973537.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
gi|300158575|gb|EFJ25197.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
Length = 306
Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 25/118 (21%), Gaps = 23/118 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLIRFP 56
+++ P ++ GD N I D + +
Sbjct: 185 ELEKRKPVIVTGDLNCAHEEIDIYDPDGNKRSAGFTSEERTSFQTNFIDKGLVDTFRKQH 244
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
R+ + FL+ + S HCP+
Sbjct: 245 PLAVGFTYWSYRSNARPQNKGW--RLDYFLVSQGLVCSVA--DSYVLPQLDGSDHCPI 298
>gi|328464771|gb|EGF36088.1| exodeoxyribonuclease III [Lactobacillus rhamnosus MTCC 5462]
Length = 152
Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 25/133 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQK 45
+Q +W + + ++ P V GD N I +D F ++
Sbjct: 19 RQ-QWDRDFLAYTNELAAKKPLVYCGDLNVAHEPIDLKNDKTNHHNAGFTDEERADFTKQ 77
Query: 46 MDPD--GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
++ F + + R + + F+ ++F Y Q
Sbjct: 78 LNSGFIDTFRHFYPDTVTYSWWSYRFHARANNAGW--RIDYFVASSAFQ--PYIQDAKIL 133
Query: 104 RRSKLSTHCPLTI 116
+ S HCP+ +
Sbjct: 134 TQIMGSDHCPVEL 146
>gi|218291327|ref|ZP_03495287.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius LAA1]
gi|218238773|gb|EED05987.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius LAA1]
Length = 174
Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 29/133 (21%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------ 48
+ + + + P + GD N I + + +
Sbjct: 47 DAFRAYLCA-LDREKPVIACGDLNVAHEEIDIKNAKSNRGNSGFTDEERAKMTELLDAGF 105
Query: 49 -DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D +P + D I+ D
Sbjct: 106 VDTFRALYPNVTDKYTWWSNMPGVRERNIGWRIDYFLVSERLRDRILEARIDDHVLG--- 162
Query: 108 LSTHCPLTIEYDF 120
S HCP+ +E D
Sbjct: 163 -SDHCPVVLEVDL 174
>gi|116669243|ref|YP_830176.1| 5'-nucleotidase domain-containing protein [Arthrobacter sp. FB24]
gi|116609352|gb|ABK02076.1| 5'-Nucleotidase domain protein [Arthrobacter sp. FB24]
Length = 1525
Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 14/134 (10%), Positives = 33/134 (24%), Gaps = 16/134 (11%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +++ + + GDFN R
Sbjct: 713 EQAKSLLAFSNDLQASKGTDKVFLMGDFNAYAKEDPINVLTAAGYINQDEKARNADGSAK 772
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--------------QSDLDTRRSK 107
+ SLD+ + + + ++ + + +
Sbjct: 773 HSYLFGGLVGSLDHVLATPGADSVVTGADIWNINSVESVALEYSRYNSNVTNYYAPDQFR 832
Query: 108 LSTHCPLTIEYDFE 121
S H P+ + D
Sbjct: 833 ASDHDPVVVGLDLP 846
>gi|291276452|ref|YP_003516224.1| putative exodeoxyribonuclease [Helicobacter mustelae 12198]
gi|290963646|emb|CBG39478.1| putative exodeoxyribonuclease [Helicobacter mustelae 12198]
Length = 250
Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 32/130 (24%), Gaps = 25/130 (19%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+W + + + ++ P +I GD N I + + +
Sbjct: 120 MQWEDDFLNFLKNLERKKPLIICGDLNVAHKEIDLKNPKTNRRNAGFTDEEREKMTTLLE 179
Query: 50 ----GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
F + + + ++ + D ++
Sbjct: 180 NGFIDTFRYFYPDLEGAYSWWSYMGRARQNNTGWRIDYFLCSEILQKRLIEAKIYSEILG 239
Query: 105 RSKLSTHCPL 114
S HCP+
Sbjct: 240 ----SDHCPV 245
>gi|254254895|ref|ZP_04948212.1| hypothetical protein BDAG_04216 [Burkholderia dolosa AUO158]
gi|124899540|gb|EAY71383.1| hypothetical protein BDAG_04216 [Burkholderia dolosa AUO158]
Length = 607
Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 33/137 (24%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ L W G ++ GDFN + L+ ++
Sbjct: 470 RAAAKLADWLAGTPTGVAGQGVLLIGDFNSYTFEDPIRVLEARGY---RNLVSRWVGADA 526
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTR 104
V LD+ + + + ++ D+
Sbjct: 527 YSYVYNGEAGYLDHALASLPLASHVKAVHEWHINADEPIALQYTLAYKSAEQQNTYYAPD 586
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ ++
Sbjct: 587 AYRSSDHDPVLVDIALP 603
>gi|254472466|ref|ZP_05085866.1| exodeoxyribonuclease III protein [Pseudovibrio sp. JE062]
gi|211958749|gb|EEA93949.1| exodeoxyribonuclease III protein [Pseudovibrio sp. JE062]
Length = 243
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 24/117 (20%), Gaps = 21/117 (17%)
Query: 24 VIAGDFNRKINSIGDT--------------------DDFWQKMDPDGLLIRFPQEKESTC 63
++ GD N D D + P +++
Sbjct: 126 IVVGDLNIAPYENDVWSHKQLIKVVSHTPLECQRLEDVREAGNYVDTMRKHMPMDQKIYT 185
Query: 64 NVIKRNKSS-LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R K D+ + + K S H P+ +
Sbjct: 186 WWSYRAKDWSASDKGRRLDHVWMTPETAQHTKDVQIMRDARGWEKPSDHAPVMAVLE 242
>gi|56963720|ref|YP_175451.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
gi|56909963|dbj|BAD64490.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
Length = 260
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 24/136 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ +++ + T P V GD N I +D +
Sbjct: 124 KAAREYL-TLLATQKPVVFCGDLNVAHQPIDVRNDRANVGNSGFTDEERAEFGKLLEAGF 182
Query: 50 -GLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F ++++ D +V
Sbjct: 183 VDTFRHFYPDDEDAFTWWSYMANVRARNIGWRIDYFLISRALMPYLVDASIHSSVLG--- 239
Query: 108 LSTHCPLTIEYDFEKG 123
S HCP+ + D +
Sbjct: 240 -SDHCPIELCLDLQPN 254
>gi|27375729|ref|NP_767258.1| exodeoxyribonuclease III [Bradyrhizobium japonicum USDA 110]
gi|27348867|dbj|BAC45883.1| exodeoxyribonuclease III [Bradyrhizobium japonicum USDA 110]
Length = 271
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 10/127 (7%), Positives = 25/127 (19%), Gaps = 25/127 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD---------------------DFWQKMDPDGLLIR 54
+ ++ GD N + +
Sbjct: 146 HPRGDDRHILVGDLNVAPHENDVWSHKQLLKVVSHTPVETEKLKAALAAGEWVDVARERI 205
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLSTHC 112
E + R + R + + + + + S H
Sbjct: 206 PMSE-KVYTWWSYR-SADWTVGDRGRRLDHIWVSRALKDAVQDFKILRDARSWERPSDHV 263
Query: 113 PLTIEYD 119
P+T+ +
Sbjct: 264 PVTVTLE 270
>gi|317133644|ref|YP_004092958.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
gi|315471623|gb|ADU28227.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
Length = 256
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 29/127 (22%), Gaps = 24/127 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDP 48
+ + + + P V+ GD N I + +
Sbjct: 124 DAFRAYLLT-LNRDKPVVVCGDMNVAHREIDIKNPKSNIHNAGFTPEERQKMTDLLEAGF 182
Query: 49 DGLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
E++ + K+ FL+ + +
Sbjct: 183 IDTFRALYPEQKDAYTWWSYMRKARERNAGW--RIDYFLVSDRLRGQ--VEDSTIYADVP 238
Query: 108 LSTHCPL 114
S HCP+
Sbjct: 239 GSDHCPV 245
>gi|25029040|ref|NP_739094.1| hypothetical protein CE2484 [Corynebacterium efficiens YS-314]
gi|259505969|ref|ZP_05748871.1| 5'-nucleotidase family protein [Corynebacterium efficiens YS-314]
gi|23494327|dbj|BAC19294.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259166450|gb|EEW51004.1| 5'-nucleotidase family protein [Corynebacterium efficiens YS-314]
Length = 850
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 37/135 (27%), Gaps = 21/135 (15%)
Query: 5 QGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + L + + P I GD N + G +
Sbjct: 684 QAQALIDHLENQDDWADKPVFILGDLNAYSRET-----VLSTLAGAGYSNIAAEYDAGYS 738
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK---------------L 108
SLD+ + + N ++D ++ D+S +
Sbjct: 739 YQFSGRIGSLDHALGNDAAMNRVVDAEVWDINADESIAFEYSRRNYNTVDVFEADNVFRS 798
Query: 109 STHCPLTIEYDFEKG 123
S H P+ + ++ E
Sbjct: 799 SDHDPIKVGFNLEST 813
>gi|260072724|gb|ACX30620.1| exonuclease III [uncultured bacterium ARCTIC96BD-19]
Length = 254
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 23/128 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------------GLL 52
+ K +VI GD+N I + + +
Sbjct: 131 HLRELQKDNRRYVICGDWNIAHKKIDLKNWRSNQKNSGFLPEERAWLDILYDEVGYIDSF 190
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E+ R ++ L+ D + + + S + + + S H
Sbjct: 191 REINNEEFQYTWWSNRGQAWLNNTGWRLDYHVVSSNMAGTATSCEI----YKAERFSDHS 246
Query: 113 PLTIEYDF 120
PL I+Y
Sbjct: 247 PLIIDYQL 254
>gi|152982063|ref|YP_001354787.1| endonuclease/exonuclease/phosphatase family protein
[Janthinobacterium sp. Marseille]
gi|151282140|gb|ABR90550.1| endonuclease/exonuclease/phosphatase family protein
[Janthinobacterium sp. Marseille]
Length = 264
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 8/125 (6%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L + + P +IAGDFN N +D+ ++ + ++
Sbjct: 142 KRQTEALIEAVTSSAQKDEPLIIAGDFNDWSN--DLSDELRARLGVHEVYDENLVKRGFG 199
Query: 63 CNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR----RSKLSTHCPLTI 116
+ + + FL + + + + +KLS H PL
Sbjct: 200 TYIRQLAGRGPKIQPARTFPAAMPFLRLDRIYVRGFKVESAEVLHGAIWAKLSDHAPLVA 259
Query: 117 EYDFE 121
+
Sbjct: 260 TLRLK 264
>gi|308813431|ref|XP_003084022.1| Glucose-repressible alcohol dehydrogenase transcriptional effector
CCR4 and related proteins (ISS) [Ostreococcus tauri]
gi|116055904|emb|CAL57989.1| Glucose-repressible alcohol dehydrogenase transcriptional effector
CCR4 and related proteins (ISS) [Ostreococcus tauri]
Length = 603
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 16/126 (12%)
Query: 4 QQGEWL----KKWADQKIKTG----IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF 55
QQ + L +++ D++ G +I GDFN + +S
Sbjct: 486 QQAKRLVEECERFVDERASAGSDVRPHVIIGGDFNSEPDS-DVYRVMTATFSSASSGR-- 542
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + NV + +DY + + + + + S H P+
Sbjct: 543 ---EPAFTNVTPSFTACIDYIFVSDGITVTRVKEQPRRETLGEG--LPNETHPSDHLPVV 597
Query: 116 IEYDFE 121
++ FE
Sbjct: 598 VDVSFE 603
>gi|16124778|ref|NP_419342.1| hypothetical protein CC_0523 [Caulobacter crescentus CB15]
gi|221233494|ref|YP_002515930.1| endonuclease/exonuclease/phosphatase family protein [Caulobacter
crescentus NA1000]
gi|13421706|gb|AAK22510.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220962666|gb|ACL94022.1| endonuclease/exonuclease/phosphatase family protein [Caulobacter
crescentus NA1000]
Length = 259
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 33/119 (27%), Gaps = 14/119 (11%)
Query: 3 SQQGEWLK--KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q L +W ++ P V+ GDFN +
Sbjct: 139 KRQAAALLGPEWIGEE-AWRAPGVLLGDFNATP-YSATYRMLRTALRDAQAPSPAWLRPA 196
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +D+ + + + + S D R S H PL I+ +
Sbjct: 197 TATFPSSFPFMRIDHVFVTKGLETRAVS----------SPYDARARIASDHLPLVIDLE 245
>gi|325962565|ref|YP_004240471.1| exodeoxyribonuclease III [Arthrobacter phenanthrenivorans Sphe3]
gi|323468652|gb|ADX72337.1| exodeoxyribonuclease III [Arthrobacter phenanthrenivorans Sphe3]
Length = 273
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 21/138 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------- 44
+ + + + K ++ GD N + +
Sbjct: 136 RFLDVMTTRLPELSKHSDHALVVGDLNVAHTPLDIRNSKGNVKKAGHLPEERAYFDRFFG 195
Query: 45 --KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
D Q +R K+ + D + S +S
Sbjct: 196 EEIGWHDVHRNLAGQVDGPYTWWSQRGKAFDNDTGWRIDYHLATPALAASAISAVVDRAP 255
Query: 103 TRRSKLSTHCPLTIEYDF 120
+ ++ S H PL ++Y
Sbjct: 256 SWDTRFSDHAPLVVDYQL 273
>gi|40063316|gb|AAR38134.1| exodeoxyribonuclease III [uncultured marine bacterium 578]
Length = 254
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 38/128 (29%), Gaps = 23/128 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------------GLL 52
+ K G ++I GD+N I + + +
Sbjct: 131 HLRKLQKDGRKYIICGDWNIAHKKIDLKNWRSNQKNSGFLPEERAWLDTLYDEVGYIDSF 190
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
++ R ++ L+ D + + + S + ++ + S H
Sbjct: 191 REINYDEFQYTWWSNRGQAWLNNTGWRLDYQVVSSNLAGLASSCEI----YKKERFSDHS 246
Query: 113 PLTIEYDF 120
PL I+Y+
Sbjct: 247 PLIIDYNL 254
>gi|227498619|ref|ZP_03928763.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904075|gb|EEH89993.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 251
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 30/123 (24%), Gaps = 23/123 (18%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDGLLIRFP 56
+ + ++ GD N I + +
Sbjct: 131 EDLSKKKTTIVCGDMNVAHEPIDLKNPDSNHHNAGFSDEERQKLDAFLARGFVDSFRMLY 190
Query: 57 QEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
++ + K+ FL+ + D + + S HCP+
Sbjct: 191 PDREGAYTWWSYMFKARERNAGW--RIDYFLVSEAGRDKIRDVTIM--NEIMGSDHCPVV 246
Query: 116 IEY 118
+EY
Sbjct: 247 LEY 249
>gi|119485388|ref|ZP_01619716.1| Endonuclease/exonuclease/phosphatase [Lyngbya sp. PCC 8106]
gi|119457144|gb|EAW38270.1| Endonuclease/exonuclease/phosphatase [Lyngbya sp. PCC 8106]
Length = 1127
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 39/134 (29%), Gaps = 20/134 (14%)
Query: 6 GEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
E L W D F+I GD N T + LI ++
Sbjct: 861 AEALDAWLNSDPTGSGDSDFLIVGDLNAYAQEDPITFLEAEGYTD---LIEEFVGDDAYS 917
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------------SKL 108
V LDY + ++ + + + V+ D+ D +
Sbjct: 918 FVFDGQFGYLDYGLANQSLLSQVTGTTEWHVNADEPDAFDYNLDFGRDPSLFDGQDPFRN 977
Query: 109 STHCPLTIEYDFEK 122
S H P+ I D E
Sbjct: 978 SDHDPVIIGLDLES 991
>gi|120553053|ref|YP_957404.1| endonuclease/exonuclease/phosphatase [Marinobacter aquaeolei VT8]
gi|120322902|gb|ABM17217.1| Endonuclease/exonuclease/phosphatase [Marinobacter aquaeolei VT8]
Length = 586
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 32/128 (25%), Gaps = 12/128 (9%)
Query: 5 QGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE-- 60
+ W P +I GD N +
Sbjct: 455 SANAIVIWLQALAGDPETTPVLITGDLNSYAREAPVERFQEAGFTSLVHQYYPCLPMQCE 514
Query: 61 STCNVIKRNKSSLDY--------FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ K +LDY I++ + + +SY Q+ + + S H
Sbjct: 515 HYTYRYQGQKGTLDYALASPALMPWIEQAQIWNINADEPRALSYRQTPDQSGPWRSSDHN 574
Query: 113 PLTIEYDF 120
P+ +
Sbjct: 575 PVLTDLKL 582
>gi|269926406|ref|YP_003323029.1| Endonuclease/exonuclease/phosphatase [Thermobaculum terrenum ATCC
BAA-798]
gi|269790066|gb|ACZ42207.1| Endonuclease/exonuclease/phosphatase [Thermobaculum terrenum ATCC
BAA-798]
Length = 271
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 27/110 (24%), Gaps = 2/110 (1%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ + P +I GDFN + + + ++ R
Sbjct: 164 IESIVPNRFPVLITGDFNCTPETEPYK--LFMDAGFKDAYLEAGCMEDKEGFTFHRFTGK 221
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + I S+ S H PL + +
Sbjct: 222 PTHSGRIDWILVRDGNARWYIRSFHLDRTGEPPIFPSDHFPLIADLSLGQ 271
>gi|170783171|ref|YP_001711505.1| putative nuclease [Clavibacter michiganensis subsp. sepedonicus]
gi|169157741|emb|CAQ02943.1| putative nuclease [Clavibacter michiganensis subsp. sepedonicus]
Length = 281
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 34/145 (23%), Gaps = 35/145 (24%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--------------- 53
++K + + V+ GD N + + L
Sbjct: 135 MEKRLPEIAEHSELAVVVGDLNVGHRELDIRNWKGNVKRAGFLPRERAYLDRILGARGED 194
Query: 54 --------------------RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI 93
+ + R K+ + D + + +
Sbjct: 195 VTGVDGSTGPGLGWVDVGRQQAGEVDGPYTWWSWRGKAFDNDTGWRIDYQLATPALAEKV 254
Query: 94 VSYDQSDLDTRRSKLSTHCPLTIEY 118
V Y + + S H P+ ++Y
Sbjct: 255 VGYAVDRAEAYDKRWSDHTPVVVDY 279
>gi|182420508|ref|ZP_02643101.2| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens NCTC 8239]
gi|182380424|gb|EDT77903.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens NCTC 8239]
Length = 262
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P++I GDFN + ++ + + + K + K D
Sbjct: 167 PYIIMGDFNCYLEDNLFNIIREEETNNTCFNVCYDNIKNNILGTFHYFKGGYDGR----I 222
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
L + I S + D S H P+ E + +
Sbjct: 223 IDYILYSKEYEIKSLNIDDRKINGGYPSDHYPVICELELK 262
>gi|332141756|ref|YP_004427494.1| extracellular ribonuclease/nuclease fusion protein [Alteromonas
macleodii str. 'Deep ecotype']
gi|327551778|gb|AEA98496.1| extracellular ribonuclease/nuclease fusion protein [Alteromonas
macleodii str. 'Deep ecotype']
Length = 1346
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 33/138 (23%), Gaps = 21/138 (15%)
Query: 4 QQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + +Q ++ GD N L+ F +
Sbjct: 1151 QAAQGIISLVEQNSDILSDRVIVMGDLNAYAKEEPILALEEAGYSN---LVNFFDGDSAY 1207
Query: 63 CNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDTRR 105
LD+ + + + + Y+ S
Sbjct: 1208 SYSFGGEMGYLDHALSSPSLTEYVVDATVWHINADEPRVFDYNVEFKSETQLSSYYGADA 1267
Query: 106 SKLSTHCPLTIEYDFEKG 123
+ S H P+ + +F +
Sbjct: 1268 YRSSDHDPVVVVLNFPEE 1285
>gi|329847963|ref|ZP_08262991.1| endonuclease/Exonuclease/phosphatase family protein [Asticcacaulis
biprosthecum C19]
gi|328843026|gb|EGF92595.1| endonuclease/Exonuclease/phosphatase family protein [Asticcacaulis
biprosthecum C19]
Length = 278
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 9/104 (8%), Positives = 24/104 (23%), Gaps = 4/104 (3%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
++G ++ GD N +S + +
Sbjct: 179 ESGALVIVLGDMNSGPDSAPYRVLTGDALGLKDARKAATVDFGPPG----TFNGFDLSAT 234
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + ++ Y +S H P+ + +
Sbjct: 235 QGEAIDHIFVPRGLAVTRYGVLTDSFSGKVISDHFPVVADIRVD 278
>gi|227834100|ref|YP_002835807.1| exodeoxyribonuclease III [Corynebacterium aurimucosum ATCC 700975]
gi|262183414|ref|ZP_06042835.1| exodeoxyribonuclease III [Corynebacterium aurimucosum ATCC 700975]
gi|227455116|gb|ACP33869.1| exodeoxyribonuclease III [Corynebacterium aurimucosum ATCC 700975]
Length = 269
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 19/128 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGLLI 53
L ++A+ + T ++ GDFN D +Q ++ GL+
Sbjct: 136 LARYAENR--TQSKLLLTGDFNIAPWDEDVWDMSPFRGKTHVTEPERAAFQMLEEAGLVE 193
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLSTH 111
+ E KS L + + ++ K S H
Sbjct: 194 VTRRFTEEDRWTYFDYKSLRFQKNEGMRIDFQLASEPLARLVEGAQVDMVERAGDKTSDH 253
Query: 112 CPLTIEYD 119
PL ++D
Sbjct: 254 VPLIADFD 261
>gi|121608588|ref|YP_996395.1| exodeoxyribonuclease III Xth [Verminephrobacter eiseniae EF01-2]
gi|121553228|gb|ABM57377.1| exodeoxyribonuclease III Xth [Verminephrobacter eiseniae EF01-2]
Length = 266
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/149 (12%), Positives = 47/149 (31%), Gaps = 36/149 (24%)
Query: 2 LSQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD-------- 47
L QQ ++ ++ + +++ F++ GD N +I + + +
Sbjct: 122 LRQQAKF--RFLAEFHPHLMRLRAEREFILCGDINIAHQTIDLKNWRSNQKNSGFLPEER 179
Query: 48 ----------------PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF 91
++ + R ++ + L +
Sbjct: 180 LWMTNLLDVNDKNGVIDVYRRLQPCATDTAYTWWSNRGRAYANNVGW--RLDYHLATPAL 237
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ ++ QS + K S H P+T++Y+
Sbjct: 238 AALARAQSIY--KGEKFSDHAPITVDYEL 264
>gi|321479408|gb|EFX90364.1| hypothetical protein DAPPUDRAFT_309679 [Daphnia pulex]
Length = 132
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 29/128 (22%), Gaps = 23/128 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
+ L + + + P +I GD N I + + ++
Sbjct: 4 KLLSELVKD-LDSKKPVIICGDMNVAHQEIDIANPKSNKRNAGFTQEERDGFSELLKSVN 62
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + ++ I L+ S
Sbjct: 63 LTDGFRHKNPDVK-GAYTFWTYMANARKKNIGWRLDYCLLSEKLSSNFC--DCCHRHEVY 119
Query: 108 LSTHCPLT 115
S HCP+
Sbjct: 120 GSDHCPVV 127
>gi|284992404|ref|YP_003410958.1| endonuclease/exonuclease/phosphatase [Geodermatophilus obscurus DSM
43160]
gi|284065649|gb|ADB76587.1| Endonuclease/exonuclease/phosphatase [Geodermatophilus obscurus DSM
43160]
Length = 271
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 31/118 (26%), Gaps = 5/118 (4%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
E + A + V+ GDFN + + L +++
Sbjct: 158 AEQIAAIAQLHTEPMETGVLVGDFNADPRAPELARLTGR-FTDAWELAPDREDRAGWRFW 216
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
R + R + + D + S H PL ++ + G
Sbjct: 217 QARRGGTHPARRPHRRIDQVWVSPGVGVSRAHVLD----GAGASDHLPLVVDLEVRSG 270
>gi|87303227|ref|ZP_01086020.1| Exodeoxyribonuclease III xth [Synechococcus sp. WH 5701]
gi|87282122|gb|EAQ74083.1| Exodeoxyribonuclease III xth [Synechococcus sp. WH 5701]
Length = 117
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 10/92 (10%), Positives = 23/92 (25%), Gaps = 2/92 (2%)
Query: 35 SIGDTDDFWQKMDP--DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
S + D +D + F + R+ + D+ +
Sbjct: 9 SDPERDALRLALDERQADVFRLFEPDSGHWSWWDYRSGAWDRDSGWRIDHIYLSEELQER 68
Query: 93 IVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
K S H P+ ++ + +
Sbjct: 69 ATGCRIQKAVRGNDKPSDHAPVVVQLQWPPES 100
>gi|325269449|ref|ZP_08136066.1| endonuclease/exonuclease/phosphatase [Prevotella multiformis DSM
16608]
gi|324988370|gb|EGC20336.1| endonuclease/exonuclease/phosphatase [Prevotella multiformis DSM
16608]
Length = 290
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 10/123 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + + P ++ GDFN + D + +
Sbjct: 167 RESARLILQRIG-LLAKAQPTILTGDFNVDQTDEIYGIFSRSGILRDCYANARQRMAPTG 225
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--SDLDTRRSK--LSTHCPLTIEY 118
+ + + + + F I Y + T +S+ +S H P+ ++
Sbjct: 226 TW-----NDFMQDSRSNARIDHVFVSSDFDIPHYAIFTNSYWTGKSRRNISDHYPVMVKL 280
Query: 119 DFE 121
F
Sbjct: 281 SFS 283
>gi|225868757|ref|YP_002744705.1| endonuclease/exonuclease/phosphatase family surface anchored
protein [Streptococcus equi subsp. zooepidemicus]
gi|225702033|emb|CAW99629.1| endonuclease/exonuclease/phosphatase family surface anchored
protein [Streptococcus equi subsp. zooepidemicus]
Length = 926
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 7/118 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L ++ + V+ GDFN + + L+ + +
Sbjct: 753 ARLLSQFTKEGASQQANIVMLGDFNDYEFTKTIK---LIEEGAMANLVSRHELSDRYSYF 809
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ R+ + S + S H PL ++ F K
Sbjct: 810 YRGNNQTLDNMLLSRNLLGHYEFDMVH----VNSPFMEAHGRASDHDPLLLQLSFGKD 863
>gi|331702430|ref|YP_004399389.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
gi|329129773|gb|AEB74326.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
Length = 256
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 32/135 (23%), Gaps = 24/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
+ ++ + + P ++ GD N I + +
Sbjct: 124 KAFYQYLTE-LDAKKPVILCGDLNVAHKEIELKNPQSNHHNAGFTDEERQDFTKLLKAGF 182
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D +P + + R S D + I
Sbjct: 183 MDTFRHFYPDQTDIYSWWSYRFHSRDRNAGWRIDYFVASNRLADQIEDSKILT----DVF 238
Query: 108 LSTHCPLTIEYDFEK 122
S HCP+ ++ +
Sbjct: 239 GSDHCPVELDTKLPR 253
>gi|332525705|ref|ZP_08401854.1| exodeoxyribonuclease III Xth [Rubrivivax benzoatilyticus JA2]
gi|332109264|gb|EGJ10187.1| exodeoxyribonuclease III Xth [Rubrivivax benzoatilyticus JA2]
Length = 227
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 38/141 (26%), Gaps = 27/141 (19%)
Query: 3 SQQGEWLK--KWADQKI---KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------- 49
+Q + + K F++ GD N I + + +
Sbjct: 89 ERQAAKYRFLDLLQPHLMALKAEREFILVGDVNIAHKEIDLKNWRGNQKNSGFLPEERAW 148
Query: 50 ----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
+ R + E R ++ L + + + +
Sbjct: 149 MTRLLDSGVVDVFRRLNPQPEQYTWWSNRGQAWAKNVGW--RLDYHLATPALAETARRE- 205
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
+ S H PLTI+YDF
Sbjct: 206 -QIFLAQRFSDHAPLTIDYDF 225
>gi|304383804|ref|ZP_07366262.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
marshii DSM 16973]
gi|304335060|gb|EFM01332.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
marshii DSM 16973]
Length = 325
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 15/123 (12%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++ +IAGDFN ++ + M Q + SLD
Sbjct: 203 RRQSPEAKILIAGDFNDYSDNEAVRSIVAKGMADVSEHATGKQG-AGGTYRYQGQWGSLD 261
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------------LSTHCPLTIEYDF 120
+ F+ + + + D T + +S H PL + +
Sbjct: 262 HLFASPSLLPFIQECYINDAPFLTEDDPTYGGRMPHRSFRGTRYVGGISDHLPLVVHLRW 321
Query: 121 EKG 123
EK
Sbjct: 322 EKS 324
>gi|194363979|ref|YP_002026589.1| endonuclease/exonuclease/phosphatase [Stenotrophomonas maltophilia
R551-3]
gi|194346783|gb|ACF49906.1| Endonuclease/exonuclease/phosphatase [Stenotrophomonas maltophilia
R551-3]
Length = 481
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 12/124 (9%)
Query: 5 QGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L W D V+ GDFN + +
Sbjct: 360 SAQQLHAWLQTDPTGTGAKDAVLLGDFNAYAMEDPIRTLHDLGWQDAFKVAKVEHP---Y 416
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPLT 115
V LD+ +++ L + + D+ D + + S H PL
Sbjct: 417 SYVYNGYTGRLDHALLNPGMAKRLRGAAEWHSNADEQDASGYQGRNVQGPWRSSDHDPLL 476
Query: 116 IEYD 119
+ +D
Sbjct: 477 LGFD 480
>gi|170764286|ref|ZP_02640401.2| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens CPE str. F4969]
gi|170713790|gb|EDT25972.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens CPE str. F4969]
Length = 262
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P++I GDFN + ++ + + + K + K D
Sbjct: 167 PYIIMGDFNCYLEDNLFNIIREEETNNTCFNVCYDNIKNNILGTFHYFKGGYDGR----I 222
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
L + I S + D S H P+ E + +
Sbjct: 223 IDYILYSKEYEIKSLNIDDRKINGGYPSDHYPVICELELK 262
>gi|92115724|ref|YP_575453.1| exodeoxyribonuclease III (xth) [Nitrobacter hamburgensis X14]
gi|91798618|gb|ABE60993.1| exodeoxyribonuclease III (xth) [Nitrobacter hamburgensis X14]
Length = 293
Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 12/126 (9%), Positives = 27/126 (21%), Gaps = 23/126 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFW-------------QKMDPDGLLIRFPQEKES- 61
+ G V+ GD N + + + +
Sbjct: 168 HPRDGDRHVLVGDLNVAPHEHDVWSHKQLLKIVSHTPVECEKLLGLQSHGNWVDIARARI 227
Query: 62 ------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLDTRRSKLSTHCP 113
R + R + + + I + + + S H P
Sbjct: 228 PMSEKVYTWWSYR-AADWVAANRGRRLDHIWVSEALRGGIRDFRITRAARGWERPSDHVP 286
Query: 114 LTIEYD 119
+T +
Sbjct: 287 VTAVIE 292
>gi|148251797|ref|YP_001236382.1| putative exodeoxyribonuclease III (xthA) [Bradyrhizobium sp. BTAi1]
gi|146403970|gb|ABQ32476.1| putative exodeoxyribonuclease III (xthA) [Bradyrhizobium sp. BTAi1]
Length = 271
Score = 54.5 bits (129), Expect = 4e-06, Method: Composition-based stats.
Identities = 10/126 (7%), Positives = 26/126 (20%), Gaps = 23/126 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFW-------------QKMDPDGLLIRFPQEK--- 59
+ ++ GD N + + + +
Sbjct: 146 HPRGDDRHILVGDLNVAPHEHDVWSHKQLLKVVSHTPIECEKLLAAQSHGAWVDVARERI 205
Query: 60 ----ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLSTHCP 113
+ R + R + + + + + S H P
Sbjct: 206 PMSEKVYTWWSYR-AADWTVGNRGRRLDHIWVSRALKDNVTDFSILRDARSWERPSDHVP 264
Query: 114 LTIEYD 119
+T+ D
Sbjct: 265 VTVTLD 270
>gi|269796627|ref|YP_003316082.1| extracellular nuclease [Sanguibacter keddieii DSM 10542]
gi|269098812|gb|ACZ23248.1| predicted extracellular nuclease [Sanguibacter keddieii DSM 10542]
Length = 1591
Score = 54.5 bits (129), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 37/137 (27%), Gaps = 27/137 (19%)
Query: 5 QGEWLKKWADQKI------KTGIPF---VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF 55
Q L W D+ + G+P ++ GDFN + D
Sbjct: 672 QATALATWVDETALPAVSAEAGVPVEDVLLLGDFNAYTHE----DPLLHLYGAGYQDATT 727
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--------------SDL 101
+ + + SLD+ +++ + ++ +
Sbjct: 728 LEGRGELTYSYQGLNGSLDHVLLNESAAERFTGSDVWEINAPESIALEYSRFNVTAGDFY 787
Query: 102 DTRRSKLSTHCPLTIEY 118
+ S H P+ +
Sbjct: 788 RADAFRSSDHDPVVVGL 804
>gi|262201711|ref|YP_003272919.1| exodeoxyribonuclease III Xth [Gordonia bronchialis DSM 43247]
gi|262085058|gb|ACY21026.1| exodeoxyribonuclease III Xth [Gordonia bronchialis DSM 43247]
Length = 278
Score = 54.5 bits (129), Expect = 4e-06, Method: Composition-based stats.
Identities = 12/111 (10%), Positives = 25/111 (22%), Gaps = 19/111 (17%)
Query: 28 DFNRKINSIGDTDDFWQKMDPDGLLIRFPQ-------------------EKESTCNVIKR 68
D+N + + P L + R
Sbjct: 168 DWNIAHAEADIKNWKGNRKSPGFLPHERDWVGEQLAGGWRDVVREQYPDDDGPYSWWSWR 227
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
K+ + D + + V + S H P+T+++
Sbjct: 228 GKAFDNDAGWRIDYQLTNRSLAQRAVKATVDRAPAYDLRWSDHAPVTVKFQ 278
>gi|110803483|ref|YP_698449.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens SM101]
gi|110683984|gb|ABG87354.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens SM101]
Length = 262
Score = 54.5 bits (129), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 4/100 (4%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P++I GDFN + ++ + + + K + K D
Sbjct: 167 PYIIMGDFNCYLEDNLFNIIREEETNNTCFNVCYDNIKNNILGTFHYFKGGYDGR----I 222
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
L I S + D S H P+ E + +
Sbjct: 223 IDYILYSKECEIKSLNIDDRKINWGYPSDHYPVICELELK 262
>gi|319441976|ref|ZP_07991132.1| exodeoxyribonuclease III [Corynebacterium variabile DSM 44702]
Length = 293
Score = 54.5 bits (129), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 36/133 (27%), Gaps = 21/133 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDG 50
+L + G F++ GD N + F +++ P
Sbjct: 157 RYLTATRRAALAEGREFLLMGDMNIAHTRHDLTHWRRNQSHDGFLPEEREWFDRQLSPRT 216
Query: 51 LLI----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
L+ P E +S D + + S
Sbjct: 217 LVDVVRSLHPDEDGPYSWWSWAGQSFAKDAGWRIDYHLATPRLARTATSAGVDRDFR-GM 275
Query: 107 KLSTHCPLTIEYD 119
+LS H P+ ++YD
Sbjct: 276 RLSDHSPVVVDYD 288
>gi|290993412|ref|XP_002679327.1| predicted protein [Naegleria gruberi]
gi|284092943|gb|EFC46583.1| predicted protein [Naegleria gruberi]
Length = 332
Score = 54.5 bits (129), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 2/103 (1%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P VI GD+N N + D L PQ +E+ +K Y+ R
Sbjct: 228 PIVILGDYNEHDNDPSCEFLKLSNLFQDALNEFVPQNRETHRWPLKFVWGLYTYWWHKRL 287
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ F + D S H P+ +F+ +
Sbjct: 288 DHCVYSKQFFKCLDCKVIDG--YEMNASDHQPVLTTLEFQTES 328
>gi|85375221|ref|YP_459283.1| exonuclease III [Erythrobacter litoralis HTCC2594]
gi|84788304|gb|ABC64486.1| exonuclease III [Erythrobacter litoralis HTCC2594]
Length = 265
Score = 54.5 bits (129), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 35/136 (25%), Gaps = 26/136 (19%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDG 50
E + +WAD+ P +I GDFN + + MD G
Sbjct: 134 ERMTRWADKV---DRPTLIVGDFNIAPLESDVWNHKQLLKVVSHTPVEVETLQRFMDAHG 190
Query: 51 LLI----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTR 104
+ R+ R + + +
Sbjct: 191 WSDIGREHIRAPERYYSWWSYRSPDWRKN-DRGRRLDHMWASPELAAQATGHRLLEDARS 249
Query: 105 RSKLSTHCPLTIEYDF 120
K S H PLT E+ F
Sbjct: 250 WEKPSDHIPLTTEFTF 265
>gi|326795198|ref|YP_004313018.1| exodeoxyribonuclease III [Marinomonas mediterranea MMB-1]
gi|326545962|gb|ADZ91182.1| exodeoxyribonuclease III [Marinomonas mediterranea MMB-1]
Length = 268
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 30/138 (21%), Gaps = 28/138 (20%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQKM 46
L + ++ GD N + + F +
Sbjct: 132 LMAYLASH-SKDEKIIVMGDVNISPTDLDIGIGEKNAKRWLKTGKCSFLPEEREWFDALL 190
Query: 47 DPDGLLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDL 101
D + Q ES R+K D L N + +
Sbjct: 191 DWGFVDTYRSQNPESNELFSWFDYRSKGFEDTPKRGLRIDVILASNGLINQLEATGIDYD 250
Query: 102 DTRRSKLSTHCPLTIEYD 119
K S H P+ +
Sbjct: 251 IRGIEKPSDHAPIWASFS 268
>gi|299133181|ref|ZP_07026376.1| exodeoxyribonuclease III Xth [Afipia sp. 1NLS2]
gi|298593318|gb|EFI53518.1| exodeoxyribonuclease III Xth [Afipia sp. 1NLS2]
Length = 271
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 11/126 (8%), Positives = 28/126 (22%), Gaps = 23/126 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDGLLIRFPQ-- 57
+ ++ GD N + + Q
Sbjct: 146 HPQGDARHILVGDLNVAPHEHDVWSHKQLLNVVSHTPVECEKLLAVQSQGNWVDIARQRI 205
Query: 58 --EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCP 113
+++ R + R + + + + + + + S H P
Sbjct: 206 PMDEKVYTWWSYR-AADWTVGNRGRRLDHIWVSPALGDKVSDFRITRDARSWERPSDHVP 264
Query: 114 LTIEYD 119
+T D
Sbjct: 265 VTAVLD 270
>gi|289669936|ref|ZP_06491011.1| nuclease [Xanthomonas campestris pv. musacearum NCPPB4381]
Length = 378
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 32/126 (25%), Gaps = 12/126 (9%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L +W D V+ GDFN + Q
Sbjct: 256 ESAKRLHQWLQTDPTGAQTKLAVLLGDFNAYALETPMRSLRASGWQDAFAVAGVKQP--- 312
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPL 114
V LD+ ++ L ++ D D + S H P+
Sbjct: 313 YSFVYDGMSGRLDHALLSPAMAKQLRGAVEWHINADVMDAAGYAKRNLPGPWRSSDHDPV 372
Query: 115 TIEYDF 120
+ +
Sbjct: 373 LLGFSL 378
>gi|282879047|ref|ZP_06287807.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
buccalis ATCC 35310]
gi|281298781|gb|EFA91190.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
buccalis ATCC 35310]
Length = 362
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 32/118 (27%), Gaps = 19/118 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + Q + + ++ ++ GDFN NS Q D E
Sbjct: 258 IRAAQADAIAQYIAAHRDKS--VILCGDFNDGPNSYARRTIAKQLRDC-------YVETA 308
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + ++ + + + K S H P+
Sbjct: 309 NGPGISYHLGGFY------VRIDHMMCSKDWTPYNCKVDN----KIKASDHYPIYCWL 356
>gi|170582912|ref|XP_001896345.1| exodeoxyribonuclease III family protein [Brugia malayi]
gi|158596475|gb|EDP34813.1| exodeoxyribonuclease III family protein [Brugia malayi]
Length = 314
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 20/124 (16%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF----------------WQKMDPDGLLIRFPQ- 57
+K+ P V GD N I + + ++ G + F +
Sbjct: 193 KKLDLSKPVVYVGDLNVAHQEIDLANPKTNRNKTAGFTDQERNDFTRLLDAGFVDVFRRL 252
Query: 58 -EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ N + + F++ L + K S HCPL++
Sbjct: 253 NPDKEGAYTFWSNMHNAREKNVGWRLDYFVVSERIMNKVKKCDILHS--IKGSDHCPLSL 310
Query: 117 EYDF 120
+
Sbjct: 311 TIEL 314
>gi|329906029|ref|ZP_08274330.1| Endonuclease/exonuclease/phosphatase [Oxalobacteraceae bacterium
IMCC9480]
gi|327547361|gb|EGF32191.1| Endonuclease/exonuclease/phosphatase [Oxalobacteraceae bacterium
IMCC9480]
Length = 264
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 8/125 (6%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L + G P +IAGDFN N ++ ++ +
Sbjct: 142 RRQAEALIEAVLDSAPPGAPVIIAGDFNDWGNH--LSEALRSRLGVTEVFDERVPSVGMG 199
Query: 63 CNVI--KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD----TRRSKLSTHCPLTI 116
+ + + + FL + + + + ++LS H P+
Sbjct: 200 SFLRRLRGPDAKIQPARTFPAMLPFLQLDRIYVRGFAIDSAEVLHGALWARLSDHAPIVA 259
Query: 117 EYDFE 121
+
Sbjct: 260 TLQLK 264
>gi|313156903|gb|EFR56341.1| endonuclease/exonuclease/phosphatase family protein [Alistipes sp.
HGB5]
Length = 294
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 17/120 (14%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+++ G ++ GDFN S + D + E+
Sbjct: 179 EELCRGERVILTGDFNVGETSRSYAILRDSGILSDTYDTAEIRYAETGTE-----NWFDP 233
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDL------------DTRRSKLSTHCPLTIEYDFEK 122
R + F ++ Y R S H P+ +E +F K
Sbjct: 234 DIKTFRRIDYLFVTPGFRVLRYGILTDTYRSENPDGGERKFRARTPSDHFPVQVELEFTK 293
>gi|163745969|ref|ZP_02153328.1| possible Endonuclease/Exonuclease/phosphatase fa [Oceanibulbus
indolifex HEL-45]
gi|161380714|gb|EDQ05124.1| possible Endonuclease/Exonuclease/phosphatase fa [Oceanibulbus
indolifex HEL-45]
Length = 333
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 38/141 (26%), Gaps = 25/141 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKI--------------------NSIGDTDDFWQ 44
Q WL++ D + P ++ GD N D +
Sbjct: 193 QAIWLRRRIDMHLAADRPVMVMGDLNDGPGLDEFESLFGRSSVEIILGEGEAALFDPHAK 252
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSYDQS 99
+ L + + ++ LDY ++ + + +
Sbjct: 253 QALSRRLGAAPTSARFWIAPEERFLQALLDYIMVSPQIRARDARWRIWHPMDDPACWRNE 312
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
L S H P+T++ D
Sbjct: 313 ALRDALLAASDHFPVTLDVDL 333
>gi|262405075|ref|ZP_06081625.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294643581|ref|ZP_06721385.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CC 2a]
gi|294808680|ref|ZP_06767414.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
xylanisolvens SD CC 1b]
gi|262355950|gb|EEZ05040.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292641076|gb|EFF59290.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CC 2a]
gi|294444119|gb|EFG12852.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
xylanisolvens SD CC 1b]
Length = 316
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 29/128 (22%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+P ++ GDFN + + D + +
Sbjct: 190 KELPAILTGDFNVDQTHQSYDAFVSKGVLCDSYEKAGFRYAINGT-----FNDFDPNSFT 244
Query: 79 DRDNKNFLIDNSFSIVSY------------------------DQSDLDTRRSKLSTHCPL 114
+ + + SF + Y + + S H P+
Sbjct: 245 ESRIDHIFVSPSFQVKRYGVLTDTYRSIVGKGEKKQANDCPEEIDIKTYQARTPSDHFPV 304
Query: 115 TIEYDFEK 122
+E +F++
Sbjct: 305 KVELEFDQ 312
>gi|45361461|ref|NP_989307.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
gi|39794455|gb|AAH64266.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|51703687|gb|AAH80950.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|89267865|emb|CAJ83004.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
Length = 316
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 20/124 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
+ + + + P ++ GD N I + + ++ +G L
Sbjct: 192 RAYLKG-LDSKKPLILCGDLNVAHQEIDLKNPKTNKKTPGFTPQERQGFGELLAEGYLDS 250
Query: 55 FPQ--EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
F + + + + + F++ + + S HC
Sbjct: 251 FRELYPDKPSAYTFWTYMMNARAKNVGWRLDYFVLSKALRPALC--DSKVRSKIMGSDHC 308
Query: 113 PLTI 116
P+T+
Sbjct: 309 PITL 312
>gi|307353485|ref|YP_003894536.1| exodeoxyribonuclease III [Methanoplanus petrolearius DSM 11571]
gi|307156718|gb|ADN36098.1| exodeoxyribonuclease III [Methanoplanus petrolearius DSM 11571]
Length = 254
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 28/120 (23%), Gaps = 22/120 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD--GLLIRFPQE 58
+ +G +I GD N I + +D F E
Sbjct: 137 LDSGKNVIICGDVNTAHKEIDLARPKENSKVSGFLEIERKWIDRLLDAGFKDSFRMFTSE 196
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ + D S + S S HCP+ +E
Sbjct: 197 GGYYSWWDLKSGARERNVGWRIDYFFVSDGISGRVKSASILSQVEG----SDHCPVELEL 252
>gi|29348040|ref|NP_811543.1| hypothetical protein BT_2630 [Bacteroides thetaiotaomicron
VPI-5482]
gi|260172059|ref|ZP_05758471.1| hypothetical protein BacD2_09356 [Bacteroides sp. D2]
gi|293371640|ref|ZP_06618051.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CMC 3f]
gi|315920369|ref|ZP_07916609.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|29339942|gb|AAO77737.1| conserved hypothetical protein with
endonuclease/exonuclease/phosphatase family domain
[Bacteroides thetaiotaomicron VPI-5482]
gi|292633337|gb|EFF51907.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CMC 3f]
gi|313694244|gb|EFS31079.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 316
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 29/128 (22%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+P ++ GDFN + + D + +
Sbjct: 190 KELPAILTGDFNVDQTHQSYDAFVSKGVLCDSYEKAGFRYAINGT-----FNDFDPNSFT 244
Query: 79 DRDNKNFLIDNSFSIVSY------------------------DQSDLDTRRSKLSTHCPL 114
+ + + SF + Y + + S H P+
Sbjct: 245 ESRIDHIFVSPSFQVKRYGVLTDTYRSIVGKGEKKQANDCPEEIDIKTYQARTPSDHFPV 304
Query: 115 TIEYDFEK 122
+E +F++
Sbjct: 305 KVELEFDQ 312
>gi|115522424|ref|YP_779335.1| exodeoxyribonuclease III Xth [Rhodopseudomonas palustris BisA53]
gi|115516371|gb|ABJ04355.1| exodeoxyribonuclease III Xth [Rhodopseudomonas palustris BisA53]
Length = 270
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 10/127 (7%), Positives = 29/127 (22%), Gaps = 23/127 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPDGLLIRFP 56
+ ++ GD N + Q + +
Sbjct: 145 HPQGEARHILVGDLNVAPHEHDVWSHKQLLKVVSHTPIECDKLLAAQQYGNWIDVARDRI 204
Query: 57 Q-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLSTHCP 113
+++ R + R + + + ++ + S H P
Sbjct: 205 PLDQKVYTWWSYR-AADWTVGDRGRRLDHIWVSKALQSHVQDFNILRDARGWERPSDHVP 263
Query: 114 LTIEYDF 120
+T ++
Sbjct: 264 VTAVFEL 270
>gi|325856403|ref|ZP_08172119.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
denticola CRIS 18C-A]
gi|325483587|gb|EGC86559.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
denticola CRIS 18C-A]
Length = 291
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 33/123 (26%), Gaps = 10/123 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + Q + P ++ GDFN + D + +
Sbjct: 175 RESTRLILQRIGQ-LAKSQPTILTGDFNVDQTDEIYGIFSRSGILRDCYAHARQRMAPTG 233
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR----RSKLSTHCPLTIEY 118
+ + + + + F I Y R +S H P+ ++
Sbjct: 234 TW-----NDFMQDSRSNARIDHVFVSSDFDIQHYAIFTNSYWLGKSRRNISDHYPVMVKL 288
Query: 119 DFE 121
F
Sbjct: 289 SFS 291
>gi|296876028|ref|ZP_06900084.1| endonuclease/exonuclease/phosphatase [Streptococcus parasanguinis
ATCC 15912]
gi|296432939|gb|EFH18730.1| endonuclease/exonuclease/phosphatase [Streptococcus parasanguinis
ATCC 15912]
Length = 770
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 9/119 (7%)
Query: 5 QGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + ++ + +K FV+ GDFN S ++ +
Sbjct: 546 QASVIHQFVQEGLKQNSKTTFVLTGDFNDYDFSTTAQILAGNELTNLMDQHDA---GDRY 602
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + LD I + I + + S H P+ ++ +F
Sbjct: 603 SYFYRGSNQVLDNIFISNNMAAKARFEPVHI----NASFMKEHGRASDHDPVLVQIEFS 657
>gi|317486298|ref|ZP_07945130.1| exodeoxyribonuclease III [Bilophila wadsworthia 3_1_6]
gi|316922468|gb|EFV43722.1| exodeoxyribonuclease III [Bilophila wadsworthia 3_1_6]
Length = 263
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 31/124 (25%), Gaps = 23/124 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DGLLIR 54
++++ P V+ GDFN I + + D
Sbjct: 141 AEELRRTKPIVVCGDFNTAHRPIDLARPKANEENSGFLPIERAWVDRFIAAGYVDTFRHI 200
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
E + ++ ++ F + + S HCP+
Sbjct: 201 HGDEPHQYSWWSYKQRARVNNVGW--RIDYFFVSEELAPAIR--DAWIENNVYGSDHCPV 256
Query: 115 TIEY 118
+E
Sbjct: 257 GLEL 260
>gi|91215919|ref|ZP_01252888.1| extracellular nuclease [Psychroflexus torquis ATCC 700755]
gi|91185896|gb|EAS72270.1| extracellular nuclease [Psychroflexus torquis ATCC 700755]
Length = 1215
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 40/151 (26%), Gaps = 33/151 (21%)
Query: 3 SQQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF----- 55
++ L W D ++I GD N + D +G F
Sbjct: 973 AEAASALVDWLATDPTDSGDSDYLIIGDLNSYQKEDPIDNILLGSDDIEGTTDDFTDLIA 1032
Query: 56 -PQEKESTCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQSD------ 100
Q ++ V +LDY + + + + S+ Y+
Sbjct: 1033 DYQGQDGYGYVFDGQLGNLDYALATDNLAEQITGTTVWHINADEISLFDYNDDIQDSSEA 1092
Query: 101 -----------LDTRRSKLSTHCPLTIEYDF 120
+ + S H P+ + D
Sbjct: 1093 SFQRESSALPIYEANAFRASDHDPVLLGLDL 1123
>gi|320160160|ref|YP_004173384.1| hypothetical protein ANT_07500 [Anaerolinea thermophila UNI-1]
gi|319994013|dbj|BAJ62784.1| hypothetical protein ANT_07500 [Anaerolinea thermophila UNI-1]
Length = 1278
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 37/133 (27%), Gaps = 19/133 (14%)
Query: 9 LKKWADQKI---KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L W + + ++ GDFN + G + + V
Sbjct: 815 LLNWINNTLIPTTGDPDVIVMGDFNAYGAEAPILTLENGGLVNMGK---QYEGVNTYSYV 871
Query: 66 IKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYD-----QSDLDTRRSKLSTHC 112
+LD+ + + + S++ Y+ + S H
Sbjct: 872 FDGMAGALDHLFVTSSLADEVTGAGHWHINADEPSVIDYNTEFKTVDLYQPHPYRSSDHD 931
Query: 113 PLTIEYDFEKGNV 125
P+ + D + +V
Sbjct: 932 PILVGLDLRRYSV 944
>gi|296272687|ref|YP_003655318.1| exodeoxyribonuclease III [Arcobacter nitrofigilis DSM 7299]
gi|296096861|gb|ADG92811.1| exodeoxyribonuclease III [Arcobacter nitrofigilis DSM 7299]
Length = 261
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 29/128 (22%), Gaps = 23/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DGL 51
+ K G ++ GD N I + D L
Sbjct: 137 DHCESLKKQGKSIIVCGDVNTAHKEIDLARPKANEGTSGFLPMEREWIDKFLSHGYIDTL 196
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E ++ R + + F + + S H
Sbjct: 197 RHVIGDEPDNYSWWSYRANARANNVGW--RIDYFYVSEDLKEHISNA--YIMSDIMGSDH 252
Query: 112 CPLTIEYD 119
CP+ +E +
Sbjct: 253 CPIALEME 260
>gi|254521169|ref|ZP_05133224.1| nuclease [Stenotrophomonas sp. SKA14]
gi|219718760|gb|EED37285.1| nuclease [Stenotrophomonas sp. SKA14]
Length = 481
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 12/124 (9%)
Query: 5 QGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L W D V+ GDFN + +
Sbjct: 360 SAQQLHAWLQTDPTGTGAKDAVLLGDFNAYAMEDPIRTLHDLGWQDAFKVAKVEHP---Y 416
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPLT 115
V LD+ +++ L + + D+ D + + S H PL
Sbjct: 417 SYVYNGYTGRLDHALLNPGMAKRLRGAAEWHSNADEQDASGYQGRNVQGPWRSSDHDPLL 476
Query: 116 IEYD 119
+ +D
Sbjct: 477 LGFD 480
>gi|172040107|ref|YP_001799821.1| putative exodeoxyribonuclease [Corynebacterium urealyticum DSM
7109]
gi|171851411|emb|CAQ04387.1| putative exodeoxyribonuclease [Corynebacterium urealyticum DSM
7109]
Length = 344
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 18/76 (23%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
Q D + P E R K+ D T
Sbjct: 269 QPGWHDAVRHLHPDEDGPYSWWSYRGKAFDTNAGWRIDLHAVTGGLLEHTTVARVDKAPT 328
Query: 104 RRSKLSTHCPLTIEYD 119
+ S H P+ +E+
Sbjct: 329 YDQRWSDHSPVILEFR 344
>gi|257092320|ref|YP_003165961.1| exodeoxyribonuclease III Xth [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257044844|gb|ACV34032.1| exodeoxyribonuclease III Xth [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 266
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 21/137 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------- 49
+ + + +G V+ GD+N I + + +
Sbjct: 125 RFMALIYPHLLELAASGRDVVVCGDWNIAHQEIDLKNWRSNRRNSGFLPEERAWVSRLLN 184
Query: 50 -----GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ R E N+ + L + + + + +
Sbjct: 185 EGGWCDVYRRLHPESTEESYTWWSNRGQAWAKNVGWRLDYQLATPAIAATARHAAVY--K 242
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H PLTI+Y+++
Sbjct: 243 EQRFSDHAPLTIDYEYD 259
>gi|114775670|ref|ZP_01451238.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Mariprofundus ferrooxydans PV-1]
gi|114553781|gb|EAU56162.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth
[Mariprofundus ferrooxydans PV-1]
Length = 263
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 22/125 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIR 54
+ G +I GD N +I + + + L +
Sbjct: 139 ITRLKDQGRELIICGDINIAHRNIDLKNWRGNRKNSGFLPEERAWFDQCLNAGFVDLFRQ 198
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
E+E R ++ + L + + + S S H P+
Sbjct: 199 LYPEREQYSWWSNRGQARANNVGW--RIDYHLCTQKTAATACEVSVFTDAWF--SDHAPV 254
Query: 115 TIEYD 119
T ++
Sbjct: 255 TANFN 259
>gi|229109650|ref|ZP_04239236.1| hypothetical protein bcere0018_19110 [Bacillus cereus Rock1-15]
gi|228673691|gb|EEL28949.1| hypothetical protein bcere0018_19110 [Bacillus cereus Rock1-15]
Length = 151
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 11/129 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + W K+ ++ GDFN S+ + + +
Sbjct: 25 QEQMNAVNNWITNKVSDYE--LLCGDFNDDPYSMVHQYLIRKHWIDVAQFKEIEENMIAQ 82
Query: 63 CNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSI--------VSYDQSDLDTRRSKLSTHCP 113
+ R +L ++ +I + +I + S L + S H
Sbjct: 83 PTLDYRKNPNLKGDVKQEKRYDWVMIQENAAIEFPTIENVSIFGDSVLTSTGVFPSDHYS 142
Query: 114 LTIEYDFEK 122
+ +E F +
Sbjct: 143 VFVELKFNE 151
>gi|237715231|ref|ZP_04545712.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|237719602|ref|ZP_04550083.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229444540|gb|EEO50331.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|229450871|gb|EEO56662.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 314
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 29/128 (22%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+P ++ GDFN + + D + +
Sbjct: 188 KELPAILTGDFNVDQTHQSYDAFVSKGVLCDSYEKAGFRYAINGT-----FNDFDPNSFT 242
Query: 79 DRDNKNFLIDNSFSIVSY------------------------DQSDLDTRRSKLSTHCPL 114
+ + + SF + Y + + S H P+
Sbjct: 243 ESRIDHIFVSPSFQVKRYGVLTDTYRSIVGKGEKKQANDCPEEIDIKTYQARTPSDHFPV 302
Query: 115 TIEYDFEK 122
+E +F++
Sbjct: 303 KVELEFDQ 310
>gi|158338616|ref|YP_001519793.1| hypothetical protein AM1_5519 [Acaryochloris marina MBIC11017]
gi|158308857|gb|ABW30474.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length = 316
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 16/118 (13%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +QQ E L + Q ++ GDFN D F Q+ +
Sbjct: 212 VRNQQFERLAPFIQQV---PNRVIVLGDFNTSP-WSPYFDQFLQEANLWSATR------G 261
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+SSL ++ + + D R+ S H P+ E
Sbjct: 262 QGIWATWSYESSLPHWFAKIPIDHITNRGFVCM------DAWAGRANGSDHRPVIAEL 313
>gi|170764194|ref|ZP_02634166.2| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens E str. JGS1987]
gi|170660566|gb|EDT13249.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens E str. JGS1987]
Length = 262
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 4/100 (4%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P++I GDFN + ++ + + + K + K D
Sbjct: 167 PYIIMGDFNCYLEDNLFNIIREEETNNTCFNVCYDNIKNNILGTFHYFKGGYDGR----I 222
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
L + I S + D R S H P+ E + +
Sbjct: 223 IDYILYSKEYEIKSLNIDDRKINRGYPSDHYPVICELELK 262
>gi|29828020|ref|NP_822654.1| hypothetical protein SAV_1479 [Streptomyces avermitilis MA-4680]
gi|29605122|dbj|BAC69189.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 303
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 21/104 (20%), Gaps = 5/104 (4%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ P V+ GDFN + + D + K
Sbjct: 204 LDRSQPLVVTGDFNAAAHKNAVYETMLGAGLVDTWDTAAERGKLYGT-----FHGYKPLV 258
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
L + + + S H P+
Sbjct: 259 PDGDRIDWILASPGVAAHCASINAFSSNGQFPSDHLPVQASLRL 302
>gi|270009978|gb|EFA06426.1| hypothetical protein TcasGA2_TC009305 [Tribolium castaneum]
Length = 1118
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------ 48
E +K+ + + P +I GD N I +
Sbjct: 991 EQFEKFIK-NLDSQKPVIICGDMNVAHKEIDLANPKTNTNSAGFSVEERDGMTAFLGNGY 1049
Query: 49 -DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D +P+++++ I + + FL+ V ++
Sbjct: 1050 VDIYRHLYPEKEKAYTFWIYMRNARPNNVGW--RLDYFLVSQ--RFVDNVCDNIIHSDVM 1105
Query: 108 LSTHCPLTIEYD 119
S HCPL++
Sbjct: 1106 GSDHCPLSLHIQ 1117
>gi|189238808|ref|XP_001815482.1| PREDICTED: similar to ap endonuclease, partial [Tribolium castaneum]
Length = 1545
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------ 48
E +K+ + + P +I GD N I +
Sbjct: 1418 EQFEKFIK-NLDSQKPVIICGDMNVAHKEIDLANPKTNTNSAGFSVEERDGMTAFLGNGY 1476
Query: 49 -DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D +P+++++ I + + FL+ V ++
Sbjct: 1477 VDIYRHLYPEKEKAYTFWIYMRNARPNNVGW--RLDYFLVSQ--RFVDNVCDNIIHSDVM 1532
Query: 108 LSTHCPLTIEYD 119
S HCPL++
Sbjct: 1533 GSDHCPLSLHIQ 1544
>gi|189238676|ref|XP_969559.2| PREDICTED: similar to ap endonuclease [Tribolium castaneum]
Length = 1246
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------ 48
E +K+ + + P +I GD N I +
Sbjct: 1119 EQFEKFIK-NLDSQKPVIICGDMNVAHKEIDLANPKTNTNSAGFSVEERDGMTAFLGNGY 1177
Query: 49 -DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D +P+++++ I + + FL+ V ++
Sbjct: 1178 VDIYRHLYPEKEKAYTFWIYMRNARPNNVGW--RLDYFLVSQ--RFVDNVCDNIIHSDVM 1233
Query: 108 LSTHCPLTIEYD 119
S HCPL++
Sbjct: 1234 GSDHCPLSLHIQ 1245
>gi|148271905|ref|YP_001221466.1| hypothetical protein CMM_0726 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829835|emb|CAN00758.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 349
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 28/113 (24%), Gaps = 4/113 (3%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + + Q++ +G P V+ GDFN D +
Sbjct: 233 KSADLITERL-QEVASGAPVVVTGDFNAPAEESAAYDILTRDAGLADTWTTAAHHATPGI 291
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ D L + +V + S H +
Sbjct: 292 GT---FTAYGDPVPEGERIDWILAGSGVEVVDSAINPYTFEGRSPSDHAAVQA 341
>gi|316931738|ref|YP_004106720.1| exodeoxyribonuclease III Xth [Rhodopseudomonas palustris DX-1]
gi|315599452|gb|ADU41987.1| exodeoxyribonuclease III Xth [Rhodopseudomonas palustris DX-1]
Length = 270
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 9/127 (7%), Positives = 28/127 (22%), Gaps = 23/127 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDGLLIRFPQ-- 57
++ GD N + + + +
Sbjct: 145 HPAGDQRHILVGDLNVAPHEHDVWSHKQLLKVVSHTPVECEKLLAVLRAGNWVDVARERI 204
Query: 58 --EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCP 113
+++ R + R + + + + + + S H P
Sbjct: 205 PLDQKVYTWWSYR-AADWTVGDRGRRLDHIWVSEALKDRVTDFKILRDARSWDRPSDHVP 263
Query: 114 LTIEYDF 120
+T+ +
Sbjct: 264 VTMTMEL 270
>gi|288803465|ref|ZP_06408897.1| AP endonuclease domain protein [Prevotella melaninogenica D18]
gi|288334075|gb|EFC72518.1| AP endonuclease domain protein [Prevotella melaninogenica D18]
Length = 366
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 21/118 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E + ++ + + +P ++ GDFN S ++++ C
Sbjct: 264 QAETVARYVKKYLDKKVPVILCGDFNDSPLSYT-HRTIAKELND--------------CF 308
Query: 65 VIKRNKSSLDY--FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V N + Y + + + F + S H P+ +
Sbjct: 309 VESGNGPGISYHKSGMYFRIDHIFRSDDFESYGAKVDN----SVTTSDHYPIYCWLKY 362
>gi|146329616|ref|YP_001209809.1| exodeoxyribonuclease III [Dichelobacter nodosus VCS1703A]
gi|146233086|gb|ABQ14064.1| exodeoxyribonuclease III [Dichelobacter nodosus VCS1703A]
Length = 258
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 22/130 (16%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------FWQKMDP------D 49
L + ++ ++G ++ GD N + Q +
Sbjct: 130 RLLPYLEELAQSGRRVIVCGDINIAHCERDIKNWRGNIHNSGFLPHERQWLTDLFAGAYK 189
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
Q +R K+ + D + + + ++S + R S
Sbjct: 190 DGFRLKNQNDHEYTWWSQRGKARANNAGWRIDYQIVSNNLAADVLSAEI----YRAQNFS 245
Query: 110 THCPLTIEYD 119
H PL + Y
Sbjct: 246 DHAPLILTYR 255
>gi|229043947|ref|ZP_04191641.1| hypothetical protein bcere0027_19890 [Bacillus cereus AH676]
gi|229144804|ref|ZP_04273201.1| hypothetical protein bcere0012_19640 [Bacillus cereus BDRD-ST24]
gi|296502778|ref|YP_003664478.1| hypothetical protein BMB171_C1945 [Bacillus thuringiensis BMB171]
gi|228638526|gb|EEK94959.1| hypothetical protein bcere0012_19640 [Bacillus cereus BDRD-ST24]
gi|228725387|gb|EEL76650.1| hypothetical protein bcere0027_19890 [Bacillus cereus AH676]
gi|296323830|gb|ADH06758.1| hypothetical protein BMB171_C1945 [Bacillus thuringiensis BMB171]
Length = 151
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 38/129 (29%), Gaps = 11/129 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + W K+ ++ GDFN S+ + + +
Sbjct: 25 QEQMNAVNNWITNKVSDYE--LLCGDFNDDPYSMVHQYLIRKHWIDVAQFKEIEENMIAQ 82
Query: 63 CNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSI--------VSYDQSDLDTRRSKLSTHCP 113
+ R +L ++ +I + + + S L + S H
Sbjct: 83 PTLDYRKNPNLKGDVKQEKRYDWVMIQENAAFEFPTIENVSIFGDSVLTSTGVFPSDHYS 142
Query: 114 LTIEYDFEK 122
+ +E F +
Sbjct: 143 VFVELKFNE 151
>gi|148225041|ref|NP_001085229.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
laevis]
gi|47937489|gb|AAH72056.1| MGC78928 protein [Xenopus laevis]
Length = 316
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 20/124 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
+ + + + P ++ GD N I + + ++ +G L
Sbjct: 192 RAYLKG-LDSKKPLILCGDLNVAHQEIDLKNPKTNKKTPGFTPQERQGFGELLAEGYLDS 250
Query: 55 FPQ--EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
F + + + + + F++ + + S HC
Sbjct: 251 FRELYPDKPSAYTFWTYMMNARAKNVGWRLDYFVLSKALRPALC--DCKIRSKVMGSDHC 308
Query: 113 PLTI 116
P+T+
Sbjct: 309 PITL 312
>gi|256828980|ref|YP_003157708.1| Endonuclease/exonuclease/phosphatase [Desulfomicrobium baculatum
DSM 4028]
gi|256578156|gb|ACU89292.1| Endonuclease/exonuclease/phosphatase [Desulfomicrobium baculatum
DSM 4028]
Length = 837
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 30/119 (25%), Gaps = 16/119 (13%)
Query: 5 QGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q E L W ++ P ++ GDFN +S G + +D L +
Sbjct: 706 QIEALLGDDWLG-RLNADQPVILCGDFNCVPSSKGYKLMRSRFLDAQAELKEYRPVCTFY 764
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + I + S H PL +
Sbjct: 765 S------------RLPSFRIDHVFIQPGIQVTGITVP-CSELAKVASDHLPLIADLTIP 810
>gi|289663955|ref|ZP_06485536.1| endonuclease/exonuclease/phosphatase family protein [Xanthomonas
campestris pv. vasculorum NCPPB702]
gi|289667545|ref|ZP_06488620.1| endonuclease/exonuclease/phosphatase family protein [Xanthomonas
campestris pv. musacearum NCPPB4381]
Length = 288
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 35/108 (32%), Gaps = 10/108 (9%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ IP V+ GDFN + D + + +++ D
Sbjct: 191 ATLPADIPVVVTGDFNSDPDQGTYRTLTAVLGDARAHVAKPQGPEKT----------FQD 240
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ ++++ + + D+ S H P+ E+++ +
Sbjct: 241 FTTQPTRRIDWILFRGLTPTRFSTLDMRPGGILPSDHYPVLAEFEWPQ 288
>gi|289645316|ref|ZP_06477309.1| Endonuclease/exonuclease/phosphatase [Frankia symbiont of Datisca
glomerata]
gi|289504875|gb|EFD25980.1| Endonuclease/exonuclease/phosphatase [Frankia symbiont of Datisca
glomerata]
Length = 327
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 11/121 (9%)
Query: 3 SQQGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+QQ ++ + + + V+AGD N S + + + E
Sbjct: 216 NQQATVVRNFVQSILAIDSQARIVVAGDLNDFPYSAPVQTLTSAGLTDLPATL---ADAE 272
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V N LD+ ++ V+ + + S H P
Sbjct: 273 RYTYVYDGNSQVLDHILLSAALAGAAHSYDVVHVNSEFATQQ------SDHDPQVARLTL 326
Query: 121 E 121
Sbjct: 327 P 327
>gi|152967922|ref|YP_001363706.1| exodeoxyribonuclease III Xth [Kineococcus radiotolerans SRS30216]
gi|151362439|gb|ABS05442.1| exodeoxyribonuclease III Xth [Kineococcus radiotolerans SRS30216]
Length = 273
Score = 54.5 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 28/123 (22%), Gaps = 20/123 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKM-----------DPDGLLIRFPQEKES---- 61
+TG ++AGD N + + + +
Sbjct: 150 AETGREALVAGDLNVGHTERDIKNWKGNRGKAGFLEDERAHFDHWFGDLGWVDTQREVAG 209
Query: 62 -----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
R ++ + D + + + + + S H P+
Sbjct: 210 DVDGPYAWWSWRGQAFDNDTGWRIDYQLVTPGLGARLQGVETDRAASYAERFSDHAPVVA 269
Query: 117 EYD 119
Y
Sbjct: 270 TYR 272
>gi|315452849|ref|YP_004073119.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
gi|315131901|emb|CBY82529.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
Length = 255
Score = 54.5 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 30/128 (23%), Gaps = 23/128 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
Q + + +I GD N I T+ + + F
Sbjct: 131 QNLASHKEVLICGDLNVAHTEIDLTNPQSNRYNAGFSDPERNAFGQLLQLGLIDTYRHFY 190
Query: 57 QE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ E N+S D + S HCP+
Sbjct: 191 PDKTEVYTWWSYMNQSRARNIGWRIDYFLASQGLRSQLKDACI----YAHILGSDHCPVG 246
Query: 116 IEYDFEKG 123
+E E G
Sbjct: 247 LEMSIEHG 254
>gi|262372803|ref|ZP_06066082.1| nuclease [Acinetobacter junii SH205]
gi|262312828|gb|EEY93913.1| nuclease [Acinetobacter junii SH205]
Length = 812
Score = 54.5 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 37/145 (25%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ E L +W + ++ GD N + + +
Sbjct: 636 KAVEQLTQWIAKNPTQVKNPNILLLGDMNSYAKEDPILAFEKANYKVLLNDSKIGEGTNA 695
Query: 62 TCNVI--------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD------------- 100
V +LD+ + D + ++ ++ D+
Sbjct: 696 YSYVFGVSSNSDGYGGAGNLDHAIADANLYKRVVKAFAWHINADEPTVLDYNEEYKTDEQ 755
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D +
Sbjct: 756 KELFFAADPYRSSDHDPVIVDLDLK 780
>gi|300774457|ref|ZP_07084320.1| AP endonuclease domain protein [Chryseobacterium gleum ATCC 35910]
gi|300506272|gb|EFK37407.1| AP endonuclease domain protein [Chryseobacterium gleum ATCC 35910]
Length = 261
Score = 54.5 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 20/115 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q +++ + + P ++AGDFN NS DGL F + +
Sbjct: 163 QVALIREAIE---NSPYPVILAGDFNSVPNSYEYYH------LSDGLEDTFLTAGKGSAT 213
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
K S +SY + +S H P+ +++
Sbjct: 214 SFHDYK-------FPIRIDYVFSSKSLKAISYKVDRSVS----ISDHYPVIVKFS 257
>gi|24373409|ref|NP_717452.1| extracellular nuclease, putative [Shewanella oneidensis MR-1]
gi|24347681|gb|AAN54896.1|AE015627_14 extracellular nuclease, putative [Shewanella oneidensis MR-1]
Length = 948
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 36/139 (25%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ +W + ++ GD N T L ++ +
Sbjct: 653 RAATAAGQWIAAQYPEQG-VLLIGDLNAYAKEDPLTALANTGFSE---LFAKLEKANAYS 708
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDLDTRRS 106
V LD+ + + + + ++ Y+ Q +
Sbjct: 709 YVFSGESGQLDHALANAALVDKVVDVTEWHINTDEPRVLDYNEEFKTPTQVQDLYASDAY 768
Query: 107 KLSTHCPLTIEYDFEKGNV 125
+ S H P+ I E V
Sbjct: 769 RSSDHDPVVISLLLEAEKV 787
>gi|330994641|ref|ZP_08318564.1| Exodeoxyribonuclease III [Gluconacetobacter sp. SXCC-1]
gi|329758282|gb|EGG74803.1| Exodeoxyribonuclease III [Gluconacetobacter sp. SXCC-1]
Length = 302
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 30/131 (22%), Gaps = 24/131 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFWQKMDP-DG 50
+ W + V+ GD N WQ+ D
Sbjct: 174 RHWFSAR--AMRRTVLVGDLNIAPLEHDVWSHKQLLKIVSHTPAETERLLAWQQTGFIDA 231
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKL 108
+ P ++ RN+ R + + K
Sbjct: 232 MRHFVPPAEKLYTWWSYRNRDWS-ASDRGRRLDHVWVTPDLRDALRGMQVLRPARDWDKP 290
Query: 109 STHCPLTIEYD 119
S H P+ ++ D
Sbjct: 291 SDHVPVIVDMD 301
>gi|190572318|ref|YP_001970163.1| hypothetical protein Smlt0242 [Stenotrophomonas maltophilia K279a]
gi|190010240|emb|CAQ43848.1| unnamed protein product [Stenotrophomonas maltophilia K279a]
Length = 570
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 33/124 (26%), Gaps = 12/124 (9%)
Query: 5 QGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L W D V+ GDFN + +
Sbjct: 449 SAQQLHAWLQTDPTGTGAKDAVLLGDFNAYAMEDPIRTLHDLGWQDAFKVAKVEHP---Y 505
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLSTHCPLT 115
V LD+ ++ L + + D+ D + + S H PL
Sbjct: 506 SYVYNGYTGRLDHALLSPGMAKRLRGAAEWHSNADEQDASGYQGRNVQGPWRSSDHDPLL 565
Query: 116 IEYD 119
+ +D
Sbjct: 566 LGFD 569
>gi|152967558|ref|YP_001363342.1| endonuclease/exonuclease/phosphatase [Kineococcus radiotolerans
SRS30216]
gi|151362075|gb|ABS05078.1| Endonuclease/exonuclease/phosphatase [Kineococcus radiotolerans
SRS30216]
Length = 868
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 35/131 (26%), Gaps = 15/131 (11%)
Query: 4 QQGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + ++ V GDFN D +
Sbjct: 635 RQAQSLAGFLARLRESTGDADVVALGDFNAYTQEDPIEVLRTDAGLVDLGERF---DAGR 691
Query: 62 TCNVIKRNKSSLDYFVIDRDNKN------FLIDNSFSIVSYDQSDLD----TRRSKLSTH 111
V SLD+ + + NS +Y + + S H
Sbjct: 692 YSYVFDALSGSLDHALASAELTAKVTDATHWNINSVESFAYQYTGDPALYAPNPYRSSDH 751
Query: 112 CPLTIEYDFEK 122
P+ D ++
Sbjct: 752 DPVVFGIDLDE 762
>gi|302346017|ref|YP_003814370.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
melaninogenica ATCC 25845]
gi|302149189|gb|ADK95451.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
melaninogenica ATCC 25845]
Length = 355
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 21/118 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E + ++ + + +P ++ GDFN S ++++ C
Sbjct: 253 QAETVARYVKKYLDKKVPVILCGDFNDSPLSYT-HRTIAKELND--------------CF 297
Query: 65 VIKRNKSSLDY--FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V N + Y + + + F + S H P+ +
Sbjct: 298 VESGNGPGISYHKSGMYFRIDHIFCSDDFDSYGAKVDN----SVTTSDHYPIYCWLKY 351
>gi|298345296|ref|YP_003717983.1| putative exodeoxyribonuclease III [Mobiluncus curtisii ATCC 43063]
gi|315655715|ref|ZP_07908613.1| exodeoxyribonuclease III [Mobiluncus curtisii ATCC 51333]
gi|298235357|gb|ADI66489.1| possible exodeoxyribonuclease III [Mobiluncus curtisii ATCC 43063]
gi|315489779|gb|EFU79406.1| exodeoxyribonuclease III [Mobiluncus curtisii ATCC 51333]
Length = 294
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 35/146 (23%), Gaps = 30/146 (20%)
Query: 6 GEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLI---------- 53
+ L A + + P +I GDFN + + G++
Sbjct: 148 VQQLSARAMAGVGSDTPQEALICGDFNIVRTARDIKNWKSNHNKTSGVMDEEIAFLDAWM 207
Query: 54 ------------------RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS 95
R K+ + D + S
Sbjct: 208 ADTLSGSKGLPCVDVGRALVGDTDGPYTWWSWRGKAYDNNAGWRLDYHMATPGLAGQAQS 267
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ + H P+T+ YDF
Sbjct: 268 AAVYRAPAYDARFTDHAPVTVTYDFP 293
>gi|254436903|ref|ZP_05050397.1| endonuclease/exonuclease/phosphatase family [Octadecabacter
antarcticus 307]
gi|198252349|gb|EDY76663.1| endonuclease/exonuclease/phosphatase family [Octadecabacter
antarcticus 307]
Length = 236
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 23/118 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
S+Q + L D P V+AGD N + + + L
Sbjct: 141 SRQAQDLAAHIDPLQ----PTVLAGDLNAAGKAPPSLSPIYACLSEVAL----------- 185
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S ++ +V D + S H P++ + F
Sbjct: 186 -------GPSFPTRWPMIRFDRIFHNSVLRLVGAQVHD-SALARQASDHFPVSATFAF 235
>gi|75674284|ref|YP_316705.1| exodeoxyribonuclease III xth [Nitrobacter winogradskyi Nb-255]
gi|74419154|gb|ABA03353.1| exodeoxyribonuclease III xth [Nitrobacter winogradskyi Nb-255]
Length = 295
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 28/126 (22%), Gaps = 23/126 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFW--------------------QKMDPDGLLIRF 55
G V+ GD N + + D R
Sbjct: 170 HPDNGDRHVLVGDLNVAPHENDVWSHKQLLKIVSHTPIECEKLLGVQDRGNWVDIARARI 229
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLSTHCP 113
P ++ R + R + + + + + + S H P
Sbjct: 230 PMSEKVYTWWSYR-AADWVAANRGRRLDHIWVSEALRDGIRDFRITRDARGWERPSDHVP 288
Query: 114 LTIEYD 119
+T +
Sbjct: 289 VTAVIE 294
>gi|198420194|ref|XP_002123983.1| PREDICTED: similar to APEX nuclease (multifunctional DNA repair
enzyme) 1 [Ciona intestinalis]
Length = 337
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 35/123 (28%), Gaps = 20/123 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------WQKMDPDGLLIRFP------- 56
+ + P V+ GD N + I + + + + DG+
Sbjct: 213 AYIKS-LDEKKPVVLCGDMNVSHHEIDLANPKGNKKNAGFSQEERDGMTELLQSGFTDTY 271
Query: 57 ---QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ + + F++ N + ++ + S HCP
Sbjct: 272 RDLYPDLTGQYTFWTYMGNCRAKNVGWRLDYFILSNKWKDNVC--DNIIETSAMGSDHCP 329
Query: 114 LTI 116
+T+
Sbjct: 330 ITL 332
>gi|319949616|ref|ZP_08023657.1| hypothetical protein ES5_09158 [Dietzia cinnamea P4]
gi|319436722|gb|EFV91801.1| hypothetical protein ES5_09158 [Dietzia cinnamea P4]
Length = 319
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 14/112 (12%), Positives = 28/112 (25%), Gaps = 9/112 (8%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-MDPDGLLIRFPQEKEST 62
+ L + + G+P V+ GD N +S + + R ++
Sbjct: 186 RSARALLEVVAAR---GLPAVVTGDLNAGSSSPAVRVLLSDGTLVDSWRVARARHSEQWG 242
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
R L ++ + L S H +
Sbjct: 243 TYADYRRPRRD-----GARIDWILTTPDLTVTDAAINPLRHEGGWPSDHLAV 289
>gi|120601181|ref|YP_965581.1| exodeoxyribonuclease III [Desulfovibrio vulgaris DP4]
gi|120561410|gb|ABM27154.1| exodeoxyribonuclease III [Desulfovibrio vulgaris DP4]
Length = 257
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 31/125 (24%), Gaps = 23/125 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQ- 57
+ ++ P V+ GDFN I + G + F
Sbjct: 136 AETLRRDRPIVVCGDFNTAHRPIDLARPKENETVSGFLPEERAWMDRFVATGYVDTFRHV 195
Query: 58 ---EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
E + + ++ F + + S HCP+
Sbjct: 196 RGDEADRYSWWSYKTRARARNVGW--RIDYFFVSEELRG--AVRDAWIEMDVMGSDHCPV 251
Query: 115 TIEYD 119
+E +
Sbjct: 252 GLELE 256
>gi|229366136|gb|ACQ58048.1| DNA-apurinic or apyrimidinic site lyase [Anoplopoma fimbria]
Length = 310
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 30/131 (22%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E + + + + P V+ GD N I + K +
Sbjct: 183 EDFRAYLSE-LDMQKPLVLCGDLNVAHQEIDLKNPKGNKKNAGFTVEEREGFGQLLGSGF 241
Query: 50 -GLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
E+ + S D + ++
Sbjct: 242 ADSFRELYPEQANAYTFWTYMMNSRGKNVGWRLDYFLLSSSLLPGLCDSKI----RSKAL 297
Query: 108 LSTHCPLTIEY 118
S HCP+T+
Sbjct: 298 GSDHCPITLHI 308
>gi|19553788|ref|NP_601790.1| extracellular nuclease [Corynebacterium glutamicum ATCC 13032]
gi|62391431|ref|YP_226833.1| extracellular nuclease [Corynebacterium glutamicum ATCC 13032]
gi|21325364|dbj|BAB99985.1| Predicted extracellular nuclease [Corynebacterium glutamicum ATCC
13032]
gi|41326772|emb|CAF21254.1| Predicted extracellular nuclease [Corynebacterium glutamicum ATCC
13032]
Length = 916
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 20/134 (14%)
Query: 5 QGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + L + + P I GD N + G +
Sbjct: 691 QAQALIDHLENQDDWASKPIFILGDTNSYAKET-----AMTTLYGAGYTNIATEFDAGYS 745
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------------S 109
SLD+ + + +ID ++ D++ +L S
Sbjct: 746 YQFSGRIGSLDHALGNEAAMKHVIDAEVWDINADEAIAFEYSRRLNNTSDVFENNVFRSS 805
Query: 110 THCPLTIEYDFEKG 123
H P+ + ++ +
Sbjct: 806 DHDPIKVGFNLSET 819
>gi|126735134|ref|ZP_01750880.1| Endonuclease/exonuclease/phosphatase [Roseobacter sp. CCS2]
gi|126715689|gb|EBA12554.1| Endonuclease/exonuclease/phosphatase [Roseobacter sp. CCS2]
Length = 332
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 41/141 (29%), Gaps = 25/141 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ--------------KMDPDG 50
Q WL+K +Q + G ++ GDFN F + DP
Sbjct: 192 QCVWLRKRVEQHLAAGEHLIVLGDFNDGPGLDEYEKLFGRSGIEIVLGEGAEEQLFDPHA 251
Query: 51 LLIRFPQEKESTCNVI------KRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSYDQS 99
++ + S ++ LDY ++ + + Y
Sbjct: 252 QMVLSRRFGASPSTARFKRKGEPYLQALLDYVMVSQGLRQKAPIWQIWHPFDHPACYADV 311
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
L S H P+ ++ D
Sbjct: 312 VLRDGLLAASDHFPVVLDIDL 332
>gi|312898827|ref|ZP_07758215.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
gi|310619989|gb|EFQ03561.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
Length = 250
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 30/129 (23%), Gaps = 24/129 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + + + P + GD N I + + +
Sbjct: 127 RNYVTE-LNRTKPVIFCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKMTELLAAGFTDT 185
Query: 52 LIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +KE R K+ + D + S
Sbjct: 186 WRYFYPDKEGVYSWWSYRFKARQNNSGWRIDYFITSSALDSRLKEALIYTNIEG----SD 241
Query: 111 HCPLTIEYD 119
HCP+ + +
Sbjct: 242 HCPVGLVIE 250
>gi|296116318|ref|ZP_06834934.1| exodeoxyribonuclease III Xth [Gluconacetobacter hansenii ATCC
23769]
gi|295977137|gb|EFG83899.1| exodeoxyribonuclease III Xth [Gluconacetobacter hansenii ATCC
23769]
Length = 264
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 30/130 (23%), Gaps = 24/130 (18%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFWQKMDPDGL 51
+ W Q+ V+ GD N WQ
Sbjct: 136 RAWFAQR--DVCRTVVVGDLNIAPLEHDVWSHRQLLKIVSHTPEETSRLLAWQNSGFVDA 193
Query: 52 LIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--QSDLDTRRSKL 108
+ F +++ RN+ R + + D K
Sbjct: 194 MRHFVPADEKLYTWWSYRNRDWS-ASNRGRRLDHVWVTPDLVPALRDMSVLRPVRDWEKP 252
Query: 109 STHCPLTIEY 118
S H P+ ++
Sbjct: 253 SDHVPVIVDL 262
>gi|166710547|ref|ZP_02241754.1| hypothetical protein Xoryp_03535 [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 288
Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ IP V+ GDFN + D + + +++ D
Sbjct: 191 ATLPADIPVVVTGDFNSDPDQGTYRTLTAVLGDARAHVAKPQGPEKT----------FQD 240
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ ++++ + + D S H P+ E+++ +
Sbjct: 241 FTTQPTRRIDWILFRGLTPTRFSTLDARPGGILPSDHYPVLAEFEWPQ 288
>gi|294013493|ref|YP_003546953.1| exodeoxyribonuclease III [Sphingobium japonicum UT26S]
gi|292676823|dbj|BAI98341.1| exodeoxyribonuclease III [Sphingobium japonicum UT26S]
Length = 265
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 39/135 (28%), Gaps = 23/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDG 50
E + +W+ P ++ GDFN + + +
Sbjct: 133 ERMIQWSSTL--EDKPTILTGDFNIAPMECDVWSHKQLLNVVSHTPIECEILARLQESND 190
Query: 51 LLI----RFPQEKESTCNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ +P + R + + D+ D + VS+ +
Sbjct: 191 WVDIGRKFYPAPQRLYTWWSYRARDWAESDRGRRLDHMWMTRDVAEKAVSHRVVEPIRGW 250
Query: 106 SKLSTHCPLTIEYDF 120
S+ S H P+ E+ F
Sbjct: 251 SRPSDHVPIITEFAF 265
>gi|46581661|ref|YP_012469.1| exodeoxyribonuclease III [Desulfovibrio vulgaris str.
Hildenborough]
gi|46451084|gb|AAS97729.1| exodeoxyribonuclease III [Desulfovibrio vulgaris str.
Hildenborough]
gi|311235301|gb|ADP88155.1| exodeoxyribonuclease III [Desulfovibrio vulgaris RCH1]
Length = 257
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 31/125 (24%), Gaps = 23/125 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQ- 57
+ ++ P V+ GDFN I + G + F
Sbjct: 136 AETLRRDRPIVVCGDFNTAHRPIDLARPKENETVSGFLPEERAWMDRFVAAGYVDTFRHV 195
Query: 58 ---EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
E + + ++ F + + S HCP+
Sbjct: 196 RGDEADRYSWWSYKTRARARNVGW--RIDYFFVSEELRG--AVRDAWIEMDVMGSDHCPV 251
Query: 115 TIEYD 119
+E +
Sbjct: 252 GLELE 256
>gi|322411464|gb|EFY02372.1| endonuclease/exonuclease/phosphatase family surface anchored
protein [Streptococcus dysgalactiae subsp. dysgalactiae
ATCC 27957]
Length = 941
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 11/120 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--ESTC 63
L K+A + V+ GDFN + Q ++ + + +
Sbjct: 760 ANMLAKFAKEGATHQANIVMLGDFNDYEFTKTI-----QLIEEGDMANLVSRHDLADRYS 814
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N +LD ++ R+ + S + S H PL ++ F+K
Sbjct: 815 YFYQGNNQTLDNMLVSRNLLGQYEFDMVH----VNSPFMEIHGRASDHDPLLLQLSFKKA 870
>gi|226228652|ref|YP_002762758.1| hypothetical protein GAU_3246 [Gemmatimonas aurantiaca T-27]
gi|226091843|dbj|BAH40288.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 1078
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 28/136 (20%), Gaps = 22/136 (16%)
Query: 6 GEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L+ W + +I GD N +
Sbjct: 850 ATQLRNWLTTNPTGTGDPDVLILGDLNAYAKEDPIMVLRNAGFIDLLESRI---GPNAYS 906
Query: 64 NVIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSDLDTR---------RS 106
V LD+ + + + SI+ Y+
Sbjct: 907 YVFDGQWGYLDHAMASSSIASQITGVTTWHINADEPSILDYNTDYKSAGQIVSLTDNSAF 966
Query: 107 KLSTHCPLTIEYDFEK 122
+ S H P+ I
Sbjct: 967 RTSDHDPVLIGLTLTS 982
>gi|319899949|ref|YP_004159677.1| Endonuclease/exonuclease/phosphatase [Bacteroides helcogenes P
36-108]
gi|319414980|gb|ADV42091.1| Endonuclease/exonuclease/phosphatase [Bacteroides helcogenes P
36-108]
Length = 287
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 2/114 (1%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ D+ + G+P ++ GDFN S +P L +
Sbjct: 176 IRLILDRVDE-LSNGLPVIVTGDFNADPESDVIKHVT-DPANPRHLTDARMESPVVYGPA 233
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + N ++ Y + LS H P+ + +
Sbjct: 234 WTFHDFGKIPYDQRPLIDYVFVRNGLKVLRYGVLAETEGNAFLSDHSPVLVTVE 287
>gi|294341555|emb|CAZ89972.1| putative Endonuclease/Exonuclease/phosphatase [Thiomonas sp. 3As]
Length = 278
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 7/122 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + L + ++ ++AGDFN IG + GL+ ++
Sbjct: 145 QRQTDRLLDYIAAQVPAQAALIVAGDFNDWHGRIGPQ------LLQQGLVDVSEPPLKTN 198
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
R + + + + +FS ++LS H PL ++
Sbjct: 199 GKTSWRKRVRTYPARLPLMPLDRIYARAFSASEIG-LGWGRAWARLSDHAPLLAWLRCDQ 257
Query: 123 GN 124
+
Sbjct: 258 PD 259
>gi|271964770|ref|YP_003338966.1| extracellular nuclease-like protein [Streptosporangium roseum DSM
43021]
gi|270507945|gb|ACZ86223.1| extracellular nuclease-like protein [Streptosporangium roseum DSM
43021]
Length = 795
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 32/131 (24%), Gaps = 17/131 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E D ++ GD N + F
Sbjct: 665 RQAEATLGLIDSLELPNP--LVLGDLNAYGEEDPIDTLETGGLTSVTKR--FVPAPLRYS 720
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-------------LDTRRSKLST 110
+ + LD+ ++ + + + ++ D+S + S
Sbjct: 721 YLYEGQLGELDHALVGKALLKRVTSATIWHINADESRILDYNTEYNPPALYRPDAFRSSD 780
Query: 111 HCPLTIEYDFE 121
H P+ I
Sbjct: 781 HDPVVIGLTLP 791
>gi|255723798|ref|XP_002546828.1| hypothetical protein CTRG_01133 [Candida tropicalis MYA-3404]
gi|240134719|gb|EER34273.1| hypothetical protein CTRG_01133 [Candida tropicalis MYA-3404]
Length = 309
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 32/115 (27%), Gaps = 4/115 (3%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ + Q + P + GDFN K + + D M + E
Sbjct: 196 SANLISDYIKQ-LPHKFPTFLIGDFNSKESDVA-YDIISDTMLDSSKVSEIVSGSELDTF 253
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY-DQSDLDTRRSKLSTHCPLTIEY 118
NK + ++ + SY + + S H P+ Y
Sbjct: 254 SGFGNKK-EFNIDFIWSFNSSDSYSTVTPTSYTVIDNYMENGYRFSDHRPIVARY 307
>gi|302895743|ref|XP_003046752.1| hypothetical protein NECHADRAFT_66713 [Nectria haematococca mpVI
77-13-4]
gi|256727679|gb|EEU41039.1| hypothetical protein NECHADRAFT_66713 [Nectria haematococca mpVI
77-13-4]
Length = 602
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 7/119 (5%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ + + Q +K + AGDFN + D E E
Sbjct: 488 QQAQVTADFIAQILKKDRKAHIIAAGDFNEFTQVAPIRTFVEESGLVDLDDAAKVPETER 547
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N +LD+ I ++ + + + ++S H P +D
Sbjct: 548 YTYLFDSNCQALDHMFISKELRY-----GVKYEHLHINTWQDKAGEVSDHDPSVALFDM 601
>gi|89055881|ref|YP_511332.1| endonuclease/exonuclease/phosphatase [Jannaschia sp. CCS1]
gi|88865430|gb|ABD56307.1| Endonuclease/exonuclease/phosphatase [Jannaschia sp. CCS1]
Length = 337
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 41/142 (28%), Gaps = 28/142 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKIN-----------------------SIGDTDD 41
Q WL++ + + G ++AGD N D
Sbjct: 195 QCIWLRRRVEAHLDAGDALIVAGDLNDGPGLDEYEALFGRSGLEIILGTAGVAERRLFDP 254
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSY 96
+ L + + + ++ LDY ++ + + +
Sbjct: 255 HAAQALQSKLSATPTTARFFKRHENRYLQALLDYVMVSPALRLRADRWHIWHPFDDPDCW 314
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
Q+DL S H P++++
Sbjct: 315 GQTDLREALLTASDHFPVSLDL 336
>gi|297625750|ref|YP_003687513.1| exodeoxyribonuclease III/exonuclease III [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296921515|emb|CBL56069.1| Exodeoxyribonuclease III/exonuclease III [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 313
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 10/118 (8%), Positives = 27/118 (22%), Gaps = 20/118 (16%)
Query: 23 FVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLIRFPQEKES-T 62
F++ GDFN + + ++ +++
Sbjct: 196 FLVVGDFNIAHTRLDVKNWRPAQKASGFLPEERAWLSEQLSPRTLVDVVRAAHPDQDGPY 255
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++ D + ++S H + ++YD
Sbjct: 256 SWWSWMGQAFARDTGWRIDYHLASPQLARRSARAFVDRDHGADERVSDHAAVVVDYDL 313
>gi|237750354|ref|ZP_04580834.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
gi|229373884|gb|EEO24275.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
Length = 255
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 30/122 (24%), Gaps = 23/122 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
++ P ++ GD N I + + + F +
Sbjct: 133 LEQYKPVIVCGDLNVAHKEIDLKNPKTNRRNAGFTDEEREKMSVLLDSGFIDSYRYFYPD 192
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + K+ + D + ++ S HCP+ I
Sbjct: 193 KEHAYTWWSYMGKARQNNTGWRIDYFLLSRCLAKNLKEAHI----YPEIMGSDHCPVGIV 248
Query: 118 YD 119
D
Sbjct: 249 ID 250
>gi|323343049|ref|ZP_08083280.1| endonuclease/exonuclease/phosphatase [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|322463113|gb|EFY08308.1| endonuclease/exonuclease/phosphatase [Erysipelothrix rhusiopathiae
ATCC 19414]
Length = 360
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 11/127 (8%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ +K+ + + G V+ GDFN ++ + + W PD ++ S
Sbjct: 236 QQLAQMKEVLESEYNQGNYVVLGGDFNHELPTTDSHNFTWTDSYPDWIMELPEDFAPSGY 295
Query: 64 NV--IKRNK-------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ N + FL+ ++ I+ D L T K S H P+
Sbjct: 296 HWGVDPDNPSVRAVDKAYRPQETFMAVIDGFLVSDNIEII--DTVGLGTVDFKYSDHNPV 353
Query: 115 TIEYDFE 121
++ F+
Sbjct: 354 SMTIIFK 360
>gi|89070627|ref|ZP_01157907.1| exodeoxyribonuclease III, putative [Oceanicola granulosus HTCC2516]
gi|89043774|gb|EAR49976.1| exodeoxyribonuclease III, putative [Oceanicola granulosus HTCC2516]
Length = 262
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 13/126 (10%), Positives = 26/126 (20%), Gaps = 22/126 (17%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDT----------------DDFWQKMDPDGLLIRFPQEK 59
+ ++ GD N + F + G + Q+
Sbjct: 138 HAERPERSILVGDLNVAPREDDVWSHKQLLRVVSHTPVEVNHFTDAQEAGGWVDVTRQDI 197
Query: 60 ES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLSTHCPL 114
S R+ R + + + S H P+
Sbjct: 198 PSGRLYSWWSYRSPDWQ-AADKGRRLDHVWASADIASAAHGSRVLRDVRGWEQPSDHVPV 256
Query: 115 TIEYDF 120
+D
Sbjct: 257 FASFDL 262
>gi|317124663|ref|YP_004098775.1| endonuclease/exonuclease/phosphatase [Intrasporangium calvum DSM
43043]
gi|315588751|gb|ADU48048.1| Endonuclease/exonuclease/phosphatase [Intrasporangium calvum DSM
43043]
Length = 805
Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 39/139 (28%), Gaps = 22/139 (15%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ L W D + +I GD N T ++ L+ + + +
Sbjct: 663 RAAGLLTDWLAADPTGTSEKDVLILGDLNSYAMEDPIT--TLREAGYTNLVRK-YGGEAA 719
Query: 62 TCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQS---------DLDTR 104
V LD+ + + + S++ Y+
Sbjct: 720 YSYVFDGQWGYLDHALATASLAPQVTGVAEWHVNADEPSVLDYNTDFKSAAQIGYLYAPD 779
Query: 105 RSKLSTHCPLTIEYDFEKG 123
+ + S H P+ + D G
Sbjct: 780 QFRNSDHDPVVVGLDLTPG 798
>gi|323344671|ref|ZP_08084895.1| endonuclease/exonuclease/phosphatase [Prevotella oralis ATCC 33269]
gi|323093941|gb|EFZ36518.1| endonuclease/exonuclease/phosphatase [Prevotella oralis ATCC 33269]
Length = 305
Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats.
Identities = 14/144 (9%), Positives = 37/144 (25%), Gaps = 29/144 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + + + P ++ GDFN D+ ++ G+L +
Sbjct: 167 RESAKLVIRKIKEITGGNAPVILTGDFNV-----DQNDEIFKIFSASGILKDSYSAAKMR 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL--------------------- 101
+ + + F++ Y
Sbjct: 222 FAENGTFNDFDTELKTESRIDHIFVSPKFNVKRYGVLTNGYWTEKGSKENLSSNKAPKEL 281
Query: 102 ---DTRRSKLSTHCPLTIEYDFEK 122
R S H P+ ++ +++
Sbjct: 282 KFKKYARRTPSDHYPVLVKIAYKQ 305
>gi|305667408|ref|YP_003863695.1| hypothetical protein FB2170_14213 [Maribacter sp. HTCC2170]
gi|88709456|gb|EAR01689.1| hypothetical protein FB2170_14213 [Maribacter sp. HTCC2170]
Length = 252
Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats.
Identities = 12/103 (11%), Positives = 26/103 (25%), Gaps = 6/103 (5%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+ +P ++ GDFN ++ ++
Sbjct: 156 SSNLPVILMGDFNLNPVEKPIKSIK------KVMVDGLDATQKPFYGPSGTFNGFNPTMK 209
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+D + N D +S H P+ I ++
Sbjct: 210 LDNRIDYIFVKNIKVKSYTHIDDRMENNKHISDHLPVLIHIEY 252
>gi|289207222|ref|YP_003459288.1| endonuclease/exonuclease/phosphatase [Thioalkalivibrio sp. K90mix]
gi|288942853|gb|ADC70552.1| Endonuclease/exonuclease/phosphatase [Thioalkalivibrio sp. K90mix]
Length = 290
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 23/121 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q + + ++I++ V+ GD N + +S+ +
Sbjct: 183 ARQAQL--DYVAERIQSERHAVVMGDLNCQQDSLEIRRLVARTG-------LLEPISCPA 233
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ D+ ++ D SD+ LS H P+ IE +
Sbjct: 234 TYPSWDPRLVFDHILLTPDLH--------------VSDMRVYNVALSDHLPVGIEIELPA 279
Query: 123 G 123
Sbjct: 280 A 280
>gi|110635562|ref|YP_675770.1| exodeoxyribonuclease III Xth [Mesorhizobium sp. BNC1]
gi|110286546|gb|ABG64605.1| exodeoxyribonuclease III Xth [Chelativorans sp. BNC1]
Length = 284
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 30/133 (22%), Gaps = 22/133 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--------------------QKM 46
+ ++ + ++ GD N
Sbjct: 152 QEMRDII-PTLDANTGSILVGDLNVAPLETDVWSHKQMLNVVSHTPVETEGLESVRKGGG 210
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSL-DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
D + P E++ R K D+ D + ++ D
Sbjct: 211 WVDLMRRHIPPEEKLFTWWSYRAKDWSLSNRGRRLDHVWSSDDLAPALSRVDVLRDARGW 270
Query: 106 SKLSTHCPLTIEY 118
+ S H P+ +
Sbjct: 271 DRPSDHVPVIAAF 283
>gi|330836714|ref|YP_004411355.1| exodeoxyribonuclease III Xth [Spirochaeta coccoides DSM 17374]
gi|329748617|gb|AEC01973.1| exodeoxyribonuclease III Xth [Spirochaeta coccoides DSM 17374]
Length = 252
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 26/133 (19%), Gaps = 24/133 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGL 51
+ + + ++ P + GD N I + + G
Sbjct: 125 DAFRAYILS-LEAMKPVFVCGDLNVAHKEIDLKNPKSNVRNAGFTQEERDKFSLFLDAGF 183
Query: 52 LIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + D + I D
Sbjct: 184 TDSFRHLYPHVIDRYSWWSYMANARAKNIGWRIDYWLTSNRYADKIHDSLIDDHIPG--- 240
Query: 108 LSTHCPLTIEYDF 120
S H P+ + D
Sbjct: 241 -SDHAPVALLLDL 252
>gi|146337348|ref|YP_001202396.1| putative exodeoxyribonuclease III (xthA) [Bradyrhizobium sp.
ORS278]
gi|146190154|emb|CAL74146.1| putative exodeoxyribonuclease III (xthA) [Bradyrhizobium sp.
ORS278]
Length = 271
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 12/127 (9%), Positives = 27/127 (21%), Gaps = 25/127 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFW---------------------QKMDPDGLLIR 54
+ ++ GD N + +
Sbjct: 146 HPRGDDRHILVGDLNVAPHEHDVWSHKQLLKVVSHTPIETEKLLAAQSHGEWVDVARERI 205
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHC 112
E + R + R + + + + +D + S H
Sbjct: 206 PMSE-KVYTWWSYR-AADWTVGDRGRRLDHIWVSRALKDRVSDFDILRDARSWERPSDHV 263
Query: 113 PLTIEYD 119
P+T+ D
Sbjct: 264 PVTVTLD 270
>gi|254563662|ref|YP_003070757.1| endonuclease/exonuclease/phosphatase [Methylobacterium extorquens
DM4]
gi|254270940|emb|CAX26945.1| putative endonuclease/exonuclease/phosphatase [Methylobacterium
extorquens DM4]
Length = 275
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 32/121 (26%), Gaps = 13/121 (10%)
Query: 5 QGEWLK--KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L W P V+ GDFN S + +
Sbjct: 166 QAKALLGPDWLGD-PACHAPTVLLGDFNATGWSRAYHRL---------SGRLTDARRLTG 215
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+R ++ + + ++ D R K S H P+ E E
Sbjct: 216 ERRWRRGGATFPSRFPLLRVDHVFVSERVAVERIAVVDTPLAR-KASDHLPVLAEIRIEP 274
Query: 123 G 123
G
Sbjct: 275 G 275
>gi|229917556|ref|YP_002886202.1| Endonuclease/exonuclease/phosphatase [Exiguobacterium sp. AT1b]
gi|229468985|gb|ACQ70757.1| Endonuclease/exonuclease/phosphatase [Exiguobacterium sp. AT1b]
Length = 1168
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 9/120 (7%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + + + + V GDFN S M ++ +
Sbjct: 940 KKIAQVVHNFVADVKTKNPEANVVALGDFNDFEFSDALQIFKGDLM---TNMVEKVPAVD 996
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V + N LD+ ++ + SD + S H P+ + DF
Sbjct: 997 RYSYVYQGNSQVLDHILVSNRLAASTKIDMIH----VNSDFTEMSGRASDHDPVLAQIDF 1052
>gi|145296587|ref|YP_001139408.1| hypothetical protein cgR_2495 [Corynebacterium glutamicum R]
gi|140846507|dbj|BAF55506.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 928
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 20/134 (14%)
Query: 5 QGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + L + + P I GD N + G +
Sbjct: 691 QAQALIDHLENQDDWASKPIFILGDTNSYAKET-----AMTTLYGAGYTNIATEFDAGYS 745
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------------S 109
+LD+ + + ++D ++ D++ +L S
Sbjct: 746 YQFSGRIGTLDHALGNEAAMKHVVDAEVWDINADEAIAFEYSRRLNNTSDVFENNVFRSS 805
Query: 110 THCPLTIEYDFEKG 123
H P+ + ++ +
Sbjct: 806 DHDPIKVGFNLSET 819
>gi|57157723|dbj|BAD83830.1| hypothetical protein [Corynebacterium glutamicum]
Length = 934
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 20/134 (14%)
Query: 5 QGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + L + + P I GD N + G +
Sbjct: 691 QAQALIDHLENQDDWASKPIFILGDTNSYAKET-----AMTTLYGAGYTNIATEFDAGYS 745
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------------S 109
+LD+ + + ++D ++ D++ +L S
Sbjct: 746 YQFSGRIGTLDHALGNEAAMKHVVDAEVWDINADEAIAFEYSRRLNNTSDVFENNVFRSS 805
Query: 110 THCPLTIEYDFEKG 123
H P+ + ++ +
Sbjct: 806 DHDPIKVGFNLSET 819
>gi|299147485|ref|ZP_07040550.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_23]
gi|298514763|gb|EFI38647.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_23]
Length = 316
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 29/128 (22%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+P ++ GDFN + + D + +
Sbjct: 190 KELPAILTGDFNVDQTHQSYDAFVSKGVLCDSYEKAGFRYAINGT-----FNDFDPNSFT 244
Query: 79 DRDNKNFLIDNSFSIVSY------------------------DQSDLDTRRSKLSTHCPL 114
+ + + SF + Y + + S H P+
Sbjct: 245 ESRIDHIFVSPSFHVKKYGVLTDTYRSIVGKGEKKQANDCPEEIDIKTYQARTPSDHFPV 304
Query: 115 TIEYDFEK 122
+E +F++
Sbjct: 305 KVELEFDQ 312
>gi|56696006|ref|YP_166360.1| endonuclease/exonuclease/phosphatase family protein [Ruegeria
pomeroyi DSS-3]
gi|56677743|gb|AAV94409.1| endonuclease/exonuclease/phosphatase family protein [Ruegeria
pomeroyi DSS-3]
Length = 337
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 37/137 (27%), Gaps = 22/137 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKIN-----------------SIGDTDDFWQKMD 47
Q WL++ + + G V+ GD N G D K
Sbjct: 200 QAIWLRERVEDHLTRGDEVVLLGDLNDGPGLDEFEHLFGRSSVEILLEAGLYDPHADKAR 259
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFV-----IDRDNKNFLIDNSFSIVSYDQSDLD 102
+ + + LDY + + R + + +L
Sbjct: 260 QVRPGPLPATARFQLPGEGRYLSALLDYVMISKGLMARRPAWRIWHPFDDAECWQMVELR 319
Query: 103 TRRSKLSTHCPLTIEYD 119
S H P+T++ D
Sbjct: 320 EALLTASDHFPVTLDID 336
>gi|324515683|gb|ADY46281.1| Recombination repair protein 1 [Ascaris suum]
Length = 378
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 30/130 (23%), Gaps = 25/130 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQE---- 58
+ Q + + AGD N I + + +
Sbjct: 254 DYIKQ-LDASKAVIYAGDLNVAHEEIDLANPKTNRNKTAGFTDQERGDFTRLLQAGFVDV 312
Query: 59 --------KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + D +V + + R S
Sbjct: 313 YRSLHPDKTGAYTFWSTMHNARATNIGWRLDYFVVSERLMDKVVKCEINS----RVMGSD 368
Query: 111 HCPLTIEYDF 120
HCPLT++ +
Sbjct: 369 HCPLTLQINL 378
>gi|84499578|ref|ZP_00997866.1| extracellular nuclease [Oceanicola batsensis HTCC2597]
gi|84392722|gb|EAQ04933.1| extracellular nuclease [Oceanicola batsensis HTCC2597]
Length = 1215
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 21/132 (15%)
Query: 6 GEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
E L W D + +I GD N G ++
Sbjct: 936 AEMLSDWLATDPTGQGAENVLILGDLNSYAREDPIKALQADGYVDLGHAA----NPDAYS 991
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQS-------DLDTRRSKL 108
V +LDY + + + + + Y+ ++
Sbjct: 992 YVFDGQVGTLDYALANGALFEDFAGATEWNINSDEADALDYNLDFGKDPSLYTGDTATRY 1051
Query: 109 STHCPLTIEYDF 120
S H P+ + +DF
Sbjct: 1052 SDHDPVIVGFDF 1063
>gi|312891039|ref|ZP_07750563.1| Endonuclease/exonuclease/phosphatase [Mucilaginibacter paludis DSM
18603]
gi|311296506|gb|EFQ73651.1| Endonuclease/exonuclease/phosphatase [Mucilaginibacter paludis DSM
18603]
Length = 279
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 29/118 (24%), Gaps = 6/118 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + K Q I + GD N S + + L+ F Q K+
Sbjct: 168 QESAKLVLKMIKQ-IAGNEKAIFTGDLNGDHESS----WYQLLASSNYLVDTFAQAKQPY 222
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + S H P+ E +
Sbjct: 223 TF-NASFNGFGKELNGNGIIDHIFTTGKADVKRWGILTDSYHGKYPSDHFPVLAEVNL 279
>gi|295689833|ref|YP_003593526.1| endonuclease/exonuclease/phosphatase [Caulobacter segnis ATCC
21756]
gi|295431736|gb|ADG10908.1| Endonuclease/exonuclease/phosphatase [Caulobacter segnis ATCC
21756]
Length = 283
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 25/113 (22%), Gaps = 7/113 (6%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L+ Q G V+ GDFN D L
Sbjct: 175 ARQLRD---QPTWPGARLVVLGDFNSAPGEPP-HDVLTSG---GDGLRDARAASPIVFGP 227
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+D + ++ + +S H P+ ++
Sbjct: 228 AGTFNDFSPGAPPVGPIDYVFVDRALQVLRFATLTDTEGGVAISDHFPIIVQI 280
>gi|256374352|ref|YP_003098012.1| endonuclease/exonuclease/phosphatase [Actinosynnema mirum DSM
43827]
gi|255918655|gb|ACU34166.1| Endonuclease/exonuclease/phosphatase [Actinosynnema mirum DSM
43827]
Length = 821
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 14/124 (11%)
Query: 4 QQGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q LK + D+ G V+AGD N S D + E+ S
Sbjct: 689 KQATLLKGFVDEVKSVDRGANVVLAGDLNDYQFSPVVAKLTEGGQVVDLMSTLPANERYS 748
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR-RSKLSTHCPLTIEYDF 120
+ + L+ ++ YD ++ + S H P ++
Sbjct: 749 YVY-----------EGNSQTLDHILLSSNVKRYRYDVVRINAEFADQASDHDPQVVKIRP 797
Query: 121 EKGN 124
GN
Sbjct: 798 STGN 801
>gi|253566723|ref|ZP_04844175.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251944286|gb|EES84775.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
Length = 287
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 26/105 (24%), Gaps = 3/105 (2%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-GLLIRFPQEKESTCNVIKRNKSSLD 74
++ G+P ++ GDFN + S +
Sbjct: 185 ELSDGLPVIVTGDFNSEPESDVIKHVTDSANPEHLTDARQASSIVYGPSWSFHDFGKIPY 244
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N ++ Y LS H P+ + +
Sbjct: 245 NKRPL--IDYVFVRNGLKVLRYGILAETENNGFLSDHTPVLVTVE 287
>gi|160947302|ref|ZP_02094469.1| hypothetical protein PEPMIC_01235 [Parvimonas micra ATCC 33270]
gi|158446436|gb|EDP23431.1| hypothetical protein PEPMIC_01235 [Parvimonas micra ATCC 33270]
Length = 250
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 32/131 (24%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + KT ++ GD N I + + +
Sbjct: 124 DAFRNYLLDLNKTKS-VIVCGDLNVAHKEIDLKNPKTNRKNAGFTDEEREKMSILLDSGF 182
Query: 50 -GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F +KE+ KS FL + +
Sbjct: 183 TDTFRYFYPDKENEYSWWSYFGKSRERNTGW--RIDYFLTSK--DMDDRLVDAQIHQSIL 238
Query: 108 LSTHCPLTIEY 118
S HCP+ +E
Sbjct: 239 GSDHCPVYLEI 249
>gi|265763129|ref|ZP_06091697.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263255737|gb|EEZ27083.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 287
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 26/105 (24%), Gaps = 3/105 (2%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-GLLIRFPQEKESTCNVIKRNKSSLD 74
++ G+P ++ GDFN + S +
Sbjct: 185 ELSDGLPVIVTGDFNSEPESDVIKHVTDSVNPEHLTDARQASSIVYGPSWSFHDFGKIPY 244
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N ++ Y LS H P+ + +
Sbjct: 245 NKRPL--IDYVFVRNGLKVLRYGILAETENNGFLSDHTPVLVTVE 287
>gi|182626212|ref|ZP_02953970.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens D str. JGS1721]
gi|177908476|gb|EDT71009.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens D str. JGS1721]
Length = 262
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P++I GDFN + ++ + + + K + K D
Sbjct: 167 PYIIMGDFNCYLEDNLFNIIREEETNNTCFNVCYDNIKNNILGTFHYFKGGYDGR----I 222
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
L + I S + + S H P+ E + +
Sbjct: 223 IDYILYSKEYEIKSLNIDNRKINGGYPSDHYPVICELELK 262
>gi|78063133|ref|YP_373041.1| endonuclease/exonuclease/phosphatase [Burkholderia sp. 383]
gi|77971018|gb|ABB12397.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. 383]
Length = 621
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 14/136 (10%), Positives = 31/136 (22%), Gaps = 22/136 (16%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + W ++ GD N + L+ +
Sbjct: 469 RAATRVADWLGTSPAGTAADGVLLIGDLNSYAKEDPVRALESRGY---ANLVARFVGDAA 525
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTR 104
V + SLD+ + + ++ D+
Sbjct: 526 YSYVFRGEAGSLDHALATPPLAARVKAVHVWHINADEPVALQPVPDYKTSAQRATYYAPD 585
Query: 105 RSKLSTHCPLTIEYDF 120
+ S H P+ I+
Sbjct: 586 AYRSSDHDPVVIDVAL 601
>gi|170763963|ref|ZP_02636372.2| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens B str. ATCC 3626]
gi|170711168|gb|EDT23350.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens B str. ATCC 3626]
Length = 262
Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats.
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 4/103 (3%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P++I GDFN + ++ + + + K + K +
Sbjct: 164 EKTPYIIMGDFNCYLEDNLFNIIREEETNNTCFNVCYDNIKNNILGTFHYFKGGYEGK-- 221
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
L + I S + D S H P+ E + +
Sbjct: 222 --IIDYILYSKEYEIKSLNIDDRKINGGYPSDHYPVICELELK 262
>gi|167584771|ref|ZP_02377159.1| Endonuclease/exonuclease/phosphatase [Burkholderia ubonensis Bu]
Length = 572
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 32/137 (23%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ L W + ++ GDFN + + L+ +
Sbjct: 436 RAAARLADWLAGTPTGASTQGVLLIGDFNSYTHEDPIRLLESRGY---RNLVSRWIGANA 492
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTR 104
V LD+ + + ++ D+
Sbjct: 493 YSYVYNGEAGYLDHALASLPLAAHVKAVHEWHINADEPVALQYTLAYKSAEQQRTWYAPD 552
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ ++
Sbjct: 553 AYRSSDHDPVLVDIALP 569
>gi|330470654|ref|YP_004408397.1| 5'-nucleotidase domain-containing protein [Verrucosispora maris
AB-18-032]
gi|328813625|gb|AEB47797.1| 5'-Nucleotidase domain protein [Verrucosispora maris AB-18-032]
Length = 1369
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 34/128 (26%), Gaps = 19/128 (14%)
Query: 4 QQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L + DQ ++ GDFN + +
Sbjct: 632 RQATALATFVDQVKADSDTDNVLLLGDFNAYTQEDPMQVLYGKDYRN-------LNNTGK 684
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR----------SKLSTH 111
T V SLD+ + + + ++ +S + S H
Sbjct: 685 TSYVFNGESGSLDHALASPSLADRVTGVDVWQINAVESYAFQYDGLAAFYAPDPYRASDH 744
Query: 112 CPLTIEYD 119
PL + +
Sbjct: 745 NPLVVGIN 752
>gi|222109447|ref|YP_002551711.1| exodeoxyribonuclease iii xth [Acidovorax ebreus TPSY]
gi|221728891|gb|ACM31711.1| exodeoxyribonuclease III Xth [Acidovorax ebreus TPSY]
Length = 267
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 36/129 (27%), Gaps = 25/129 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-----------------------GLL 52
++K F++ GD N I + + + +
Sbjct: 140 RLKAEREFILCGDINIAHQQIDLKNWRSNQKNSGFLPEERAWMTKLLHISDPTGGLVDVY 199
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ E C N+ + L + + ++ + + K S H
Sbjct: 200 RQLQPEATDACYTWWSNRGQAYANNVGWRLDYHLATPAIAALARTEEIY--KAQKFSDHA 257
Query: 113 PLTIEYDFE 121
P+T+ Y+
Sbjct: 258 PITVGYELS 266
>gi|282859926|ref|ZP_06269014.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
bivia JCVIHMP010]
gi|282587329|gb|EFB92546.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
bivia JCVIHMP010]
Length = 384
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 19/122 (15%)
Query: 1 MLSQ--QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
M+ + Q + + + + + G P ++ GDFN S D +
Sbjct: 276 MMRRAPQVDAVAAYVKKYLDKGTPVILCGDFNDTPISYS-HDVINGLLTD---------- 324
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S + S + + + + F S H P++
Sbjct: 325 --SYASSGNGLGFSYNKSKMYFRIDHIFASSEFEPYGAKVDKSINN----SDHYPISCWL 378
Query: 119 DF 120
+
Sbjct: 379 KY 380
>gi|114047106|ref|YP_737656.1| PKD domain-containing protein [Shewanella sp. MR-7]
gi|113888548|gb|ABI42599.1| PKD domain containing protein [Shewanella sp. MR-7]
Length = 948
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 35/139 (25%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ +W + ++ GD N + L + +
Sbjct: 653 RAATAAGQWIAAQYPEQG-VLLIGDLNSYAKEDPLSALANAGFSE--LFAKLEKANP-YS 708
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDLDTRRS 106
V LD+ + + + + ++ Y+ Q +
Sbjct: 709 YVFSGESGQLDHALANAALVDKVLDVTEWHINTDEPRVLDYNEEFKTAAQVQDLYASDAY 768
Query: 107 KLSTHCPLTIEYDFEKGNV 125
+ S H P+ I E V
Sbjct: 769 RSSDHDPVVISLLLEAEKV 787
>gi|221197415|ref|ZP_03570462.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD2M]
gi|221204089|ref|ZP_03577107.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD2]
gi|221176255|gb|EEE08684.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD2]
gi|221183969|gb|EEE16369.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD2M]
Length = 603
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 33/137 (24%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ L W G ++ GDFN + L+ +
Sbjct: 466 RAAAKLADWLAGTPTGVAGQGVLLIGDFNSYTYEDPIRLLESRGY---RNLVSRWIGANA 522
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-----------------QSDLDTR 104
V LD+ + + + ++ D Q+
Sbjct: 523 YSYVYNGEAGYLDHALASLPLASHVKAVHEWHINADEPVALQYTLAYKSAEQQQTYYAPD 582
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ I+
Sbjct: 583 AYRSSDHDPVLIDIALP 599
>gi|221210702|ref|ZP_03583682.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD1]
gi|221169658|gb|EEE02125.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD1]
Length = 603
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 33/137 (24%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ L W G ++ GDFN + L+ +
Sbjct: 466 RAAAKLADWLAGTPTGVAGQGVLLIGDFNSYTYEDPIRLLESRGY---RNLVSRWIGANA 522
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-----------------QSDLDTR 104
V LD+ + + + ++ D Q+
Sbjct: 523 YSYVYNGEAGYLDHALASLPLASHVKAVHEWHINADEPVALQYTLAYKSAEQQQTYYAPD 582
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ I+
Sbjct: 583 AYRSSDHDPVLIDIALP 599
>gi|213512198|ref|NP_001135227.1| DNA-(apurinic or apyrimidinic site) lyase [Salmo salar]
gi|197631957|gb|ACH70702.1| APEX nuclease 1 [Salmo salar]
gi|209154634|gb|ACI33549.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
gi|209154684|gb|ACI33574.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
Length = 312
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 19/117 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQ--EK 59
+ P V+ GD N I + + ++ G F + +
Sbjct: 194 LDKRKPLVLCGDLNVAHEEIDLKNSKGNKKNAGFTAEEREGFNQLLAAGFTDSFRELYPE 253
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ + + F++ ++ ++ S HCP+T+
Sbjct: 254 QANAYTFWTYMMNSRSKNVGWRLDYFVLSSALLPGLC--DSKIRNQAMGSDHCPITL 308
>gi|161521728|ref|YP_001585155.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans ATCC
17616]
gi|189352108|ref|YP_001947735.1| putative extracellular endonuclease/exonuclease/phosphatase
[Burkholderia multivorans ATCC 17616]
gi|160345778|gb|ABX18863.1| Endonuclease/exonuclease/phosphatase [Burkholderia multivorans ATCC
17616]
gi|189336130|dbj|BAG45199.1| putative extracellular endonuclease/exonuclease/phosphatase
[Burkholderia multivorans ATCC 17616]
Length = 603
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 33/137 (24%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ L W G ++ GDFN + L+ +
Sbjct: 466 RAAAKLADWLAGTPTGVAGQGVLLIGDFNSYTYEDPIRLLESRGY---RNLVSRWIGANA 522
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-----------------QSDLDTR 104
V LD+ + + + ++ D Q+
Sbjct: 523 YSYVYNGEAGYLDHALASLPLASHVKAVHEWHINADEPVALQYTLAYKSAEQQQTYYAPD 582
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ I+
Sbjct: 583 AYRSSDHDPVLIDIALP 599
>gi|188575171|ref|YP_001912100.1| endonuclease/exonuclease/phosphatase family [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|188519623|gb|ACD57568.1| endonuclease/exonuclease/phosphatase family [Xanthomonas oryzae pv.
oryzae PXO99A]
Length = 319
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ IP V+ GDFN + D + + +++ N + +D
Sbjct: 222 ATLPADIPVVVTGDFNSDPDQGTYRTLTAVLGDARAHVAKPQGPEKTFQNFTTQPTRRID 281
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + + D S H P+ E+++ +
Sbjct: 282 WILFR----------GLTPTRFSTLDARPGGILPSDHYPVLAEFEWPQ 319
>gi|114764770|ref|ZP_01443953.1| alkaline phosphatase [Pelagibaca bermudensis HTCC2601]
gi|114542819|gb|EAU45841.1| alkaline phosphatase [Roseovarius sp. HTCC2601]
Length = 2191
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 11/126 (8%)
Query: 3 SQQGE--WLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
+Q + ++ + D+ + V+ GDFN + + + E
Sbjct: 1819 ERQAQSAEVQGFVDELLAEDGAANVVVLGDFNEFEFVSPLEELEGSGLVNLTNSL---PE 1875
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
E + N SLD+ ++ + ++ S+ S H P+ +
Sbjct: 1876 DERYSYSFQGNSQSLDHILVSNNLGLDAEFDAVH----VNSEFAVTDESASDHDPVLAKV 1931
Query: 119 DFEKGN 124
+
Sbjct: 1932 SLGSKS 1937
>gi|312878938|ref|ZP_07738738.1| exodeoxyribonuclease III Xth [Aminomonas paucivorans DSM 12260]
gi|310782229|gb|EFQ22627.1| exodeoxyribonuclease III Xth [Aminomonas paucivorans DSM 12260]
Length = 261
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 12/131 (9%), Positives = 28/131 (21%), Gaps = 19/131 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------ 45
+ E + ++ + P + GD N T ++
Sbjct: 126 RFFERVLALLERHCREADPVLWTGDLNVAPTDRDVTHPENKRDHVCFHRDVQRAFRDVLS 185
Query: 46 MDPDGLLIRFPQEKESTCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + + R S D+ + V
Sbjct: 186 WGLEDVYRKHRPGDGEFSFWDYRVRDSLARNIGWRIDHLLASPPLAERSVDAYAVRELRA 245
Query: 105 RSKLSTHCPLT 115
+ + S H +
Sbjct: 246 QERPSDHTAVV 256
>gi|159487062|ref|XP_001701554.1| predicted protein [Chlamydomonas reinhardtii]
gi|158271495|gb|EDO97312.1| predicted protein [Chlamydomonas reinhardtii]
Length = 1288
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 8/122 (6%)
Query: 3 SQQGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL-----IRF 55
+QQ L + Q + + V+ GD N S + + LL +
Sbjct: 1110 AQQASILAGFVSQILALEEQSRVVVMGDLNDFAGSSALGVLYASGLTNAYLLPEQSGLLR 1169
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + N +LD+ ++ V+ + +D ++ S H PL
Sbjct: 1170 TPPNQRYSYNFEGNAQALDHILLSPSLVGGAE-VGVLHVNSEFADDAASGTRFSDHDPLM 1228
Query: 116 IE 117
+
Sbjct: 1229 VR 1230
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 8/123 (6%)
Query: 3 SQQGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL-----IRF 55
++Q E + Q + V+ GD N S + + LL +
Sbjct: 498 AKQAEVVAGAVSQILALDAQARVVVMGDLNDFAGSSALGVLYASGLTNAYLLPEQSGLLR 557
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + N +LD+ ++ V+ + +D ++ S H PL
Sbjct: 558 TPPNQRYSYNFEGNAQALDHILLSPSLVGGAE-VGVLHVNSEFADDAPASTRFSDHDPLL 616
Query: 116 IEY 118
+
Sbjct: 617 VRL 619
>gi|18310037|ref|NP_561971.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens str. 13]
gi|18144716|dbj|BAB80761.1| hypothetical protein [Clostridium perfringens str. 13]
Length = 256
Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 4/103 (3%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P++I GDFN + ++ + + + K + K +
Sbjct: 158 EKTPYIIMGDFNCYLEDNLFNIIREEETNNTCFNVCYDNIKNNILGTFHYFKGGYEGK-- 215
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
L + I S + D S H P+ E + +
Sbjct: 216 --IIDYILYSKEYEIKSLNIDDRKIDGGYPSDHYPVICELELK 256
>gi|190573815|ref|YP_001971660.1| hypothetical protein Smlt1836 [Stenotrophomonas maltophilia K279a]
gi|190011737|emb|CAQ45357.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
Length = 298
Score = 53.7 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 11/117 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
E + K + + +P V+ GDFN + + ++ D +
Sbjct: 192 AELIGKRVEA-LPADLPVVLTGDFNSEPGGDTYK--AFTRLLQDTRTQVKVPQGPRLT-- 246
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
D+ ++++ F S+ D S H PL +E D+ K
Sbjct: 247 ------FHDFTGKATVQLDWVLVRGFHARSFLTDDRRIDGVLPSDHFPLVVELDWPK 297
>gi|217973633|ref|YP_002358384.1| PKD domain-containing protein [Shewanella baltica OS223]
gi|217498768|gb|ACK46961.1| PKD domain containing protein [Shewanella baltica OS223]
Length = 944
Score = 53.7 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 36/139 (25%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ +W ++ ++ GD N T L ++
Sbjct: 649 RAATAAGQWISEQY-PDQGVLLIGDLNAYAKEDPLTALGNAGFSE---LFAKLEKPNPYS 704
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDLDTRRS 106
V LD+ + + + + ++ Y+ Q T
Sbjct: 705 YVFSAESGQLDHALANAALLDKVVDVTEWHINTDEPRVLDYNEEFKTPAQIQDLFATDAY 764
Query: 107 KLSTHCPLTIEYDFEKGNV 125
+ S H P+ I + V
Sbjct: 765 RSSDHDPVVISLLLDAEKV 783
>gi|327438448|dbj|BAK14813.1| exonuclease III [Solibacillus silvestris StLB046]
Length = 252
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 11/131 (8%), Positives = 28/131 (21%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ ++ + + + P + GD N + + + +
Sbjct: 124 DRMRIYLKE-LDAKKPVIYCGDLNVAHSELDIKNVKSNIGNSGFTYEERGKMTDLLTSGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + K D +
Sbjct: 183 TDTFRHFHPDVTDHFTWWSYMAKVRERNIGWRIDYFIISDRLVEKVEEASIHSEILG--- 239
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 240 -SDHCPIVLKL 249
>gi|87201202|ref|YP_498459.1| exodeoxyribonuclease III [Novosphingobium aromaticivorans DSM
12444]
gi|87136883|gb|ABD27625.1| exodeoxyribonuclease III [Novosphingobium aromaticivorans DSM
12444]
Length = 263
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 38/134 (28%), Gaps = 23/134 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDG 50
E + +WA++ P +I GDFN D + D G
Sbjct: 133 ERMTRWAEKI---ERPTLIVGDFNIAPLECDVYDHKALLKVVSHTPLEVETLQRFADAHG 189
Query: 51 LLIR----FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ P + + R+ D+ + + + + +
Sbjct: 190 WVDLGRKHIPAPERNYSWWSYRSYWRAKDQGRRLDHMWASPEAAAQTRGHRFVEETRKWD 249
Query: 107 KLSTHCPLTIEYDF 120
+ S H PL E D
Sbjct: 250 QPSDHIPLITELDL 263
>gi|188990144|ref|YP_001902154.1| hypothetical protein xccb100_0749 [Xanthomonas campestris pv.
campestris str. B100]
gi|167731904|emb|CAP50088.1| putative exported protein [Xanthomonas campestris pv. campestris]
Length = 288
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 34/120 (28%), Gaps = 11/120 (9%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + Q + IP V+ GDFN + I + D +
Sbjct: 180 ERSARLILSRIAQ-LPADIPVVLTGDFNSDPDKITY--PTLTAVLGDARAKAPKRSGPEN 236
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
D+ ++++ + + D S H P+ E+ + +
Sbjct: 237 T--------FQDFSTHPTRRIDWILFRGLTPTQFTTLDDRPGGVLPSDHYPVLAEFAWPR 288
>gi|123385824|ref|XP_001299171.1| exodeoxyribonuclease III family protein [Trichomonas vaginalis G3]
gi|121879954|gb|EAX86241.1| exodeoxyribonuclease III family protein [Trichomonas vaginalis G3]
Length = 467
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 18/127 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLL 52
LK++ D+ KT + GD N I D F + ++
Sbjct: 138 LKEYLDELSKTKA-VIWTGDLNVAHEEIDIFDPKGKDKTAGYTPQEREWFHKFLESGYTD 196
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
I + + + F++ ++ +D S H
Sbjct: 197 IFRKRYPDKKEFSFYTYRGQAKAKGNGWRLDYFIM-DNAHYKDELVNDCAMETGDFSDHV 255
Query: 113 PLTIEYD 119
P+++ D
Sbjct: 256 PVSLFLD 262
>gi|300767631|ref|ZP_07077541.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300494616|gb|EFK29774.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 265
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 31/124 (25%), Gaps = 23/124 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRFPQ---- 57
+ P + GD N +I + + ++ G F
Sbjct: 144 LSANKPLIFCGDLNVAHENIDLKNWRSNHHSAGFTDEERTKFDRLLAAGYTDTFRHFYPD 203
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + R + + D +++ + S HCP+ ++
Sbjct: 204 QTDIYSWWSYRGHARDNNSGWRIDYFITSQQLDSQLLNARIHNEIFG----SDHCPVELD 259
Query: 118 YDFE 121
Sbjct: 260 IILP 263
>gi|160891511|ref|ZP_02072514.1| hypothetical protein BACUNI_03962 [Bacteroides uniformis ATCC 8492]
gi|156858918|gb|EDO52349.1| hypothetical protein BACUNI_03962 [Bacteroides uniformis ATCC 8492]
Length = 283
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 6/118 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + Q + +P ++ DFN ++S + G+ K +
Sbjct: 172 RESAVLILEKIKQ-MAGDLPVIVTRDFNGTVDSEPV-----TVLTEGGMKNACVTAKVAY 225
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ R I + + Y D LS H P+
Sbjct: 226 GPTWSFHDFGRIPVEKRRLIDFIFIKGAVEVERYRTIDDKPDNGYLSDHAPVMAILKL 283
>gi|84500561|ref|ZP_00998810.1| hypothetical protein OB2597_11401 [Oceanicola batsensis HTCC2597]
gi|84391514|gb|EAQ03846.1| hypothetical protein OB2597_11401 [Oceanicola batsensis HTCC2597]
Length = 266
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 31/114 (27%), Gaps = 16/114 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q ++ G P V GDFN S ++ M Q
Sbjct: 167 EQARKFATMVQSVLQPGDPVVACGDFNVLPGSE-----TFRVMARVAPYNLVTQRGFDGT 221
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
K L++ ++D +S HCPL ++
Sbjct: 222 RTSHYEKPERW-------ADYMLVNGPLKDAAFDVIRTPE----ISDHCPLVLD 264
>gi|330508676|ref|YP_004385104.1| extracellular nuclease [Methanosaeta concilii GP-6]
gi|328929484|gb|AEB69286.1| extracellular nuclease, putative [Methanosaeta concilii GP-6]
Length = 596
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 30/127 (23%), Gaps = 13/127 (10%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ L W D ++I GD N N + S
Sbjct: 472 RAANELIDWLSSDPTGSHDPDYLILGDMNSYRNEDPIMALKRAGYVNQISSLLA---SNS 528
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--------YDQSDLDTRRSKLSTHCP 113
V + LD+ + + S ++ Y + + S H P
Sbjct: 529 YSYVFQGRWGELDHILASPSLTGQVTGASIWHINSDESPDFGYSGIWSSPDKYRCSDHDP 588
Query: 114 LTIEYDF 120
L
Sbjct: 589 LIAGISL 595
>gi|229824863|ref|ZP_04450932.1| hypothetical protein GCWU000182_00212 [Abiotrophia defectiva ATCC
49176]
gi|229790866|gb|EEP26980.1| hypothetical protein GCWU000182_00212 [Abiotrophia defectiva ATCC
49176]
Length = 258
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 14/119 (11%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ LKK ++ I IP +IAGDFN + +S + + +
Sbjct: 153 QLLKKIDEEIIFPDIPVIIAGDFNAEPDSPE----MQAVITSEKYYDLTAGIDFT----- 203
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
DY + + + ++ D +S H P+ ++ G +
Sbjct: 204 -----FHDYGKTKEKIDYIFVSRNITCKKTEKWDDVKNGVYISDHYPIQVDISINNGGI 257
>gi|299141468|ref|ZP_07034604.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
oris C735]
gi|298576804|gb|EFI48674.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
oris C735]
Length = 299
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 29/123 (23%), Gaps = 10/123 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + + + G ++ GDFN D + + +
Sbjct: 183 RESARLIIQRMKE-LTGGKHTILTGDFNANQTDESYKMFSESGFLHDCYVNAHQRMAPAG 241
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR----RSKLSTHCPLTIEY 118
+ + F I Y R +S H P+ ++
Sbjct: 242 TWNDYMQDCP-----GMARIDHIFVTKDFDINHYGIFTNSYWLGKTRRNISDHYPVMVKL 296
Query: 119 DFE 121
Sbjct: 297 QMN 299
>gi|253573925|ref|ZP_04851267.1| endonuclease/exonuclease/phosphatase [Paenibacillus sp. oral taxon
786 str. D14]
gi|251846402|gb|EES74408.1| endonuclease/exonuclease/phosphatase [Paenibacillus sp. oral taxon
786 str. D14]
Length = 258
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 7/113 (6%)
Query: 6 GEWLKKWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
E +++ + + +TG+P V+ GDFN + + T + + QEK+
Sbjct: 148 MELIRERMKEFRTQTGLPVVLTGDFNVEPANAVITGLEQEGYRNAYSV--LQQEKKEVGA 205
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + I + S H P+ E
Sbjct: 206 TVHHFLGGE----SGEPIDYIFVSPDLQIQNVRVDRELYEGRYPSDHYPVIAE 254
>gi|254514282|ref|ZP_05126343.1| exodeoxyribonuclease III [gamma proteobacterium NOR5-3]
gi|219676525|gb|EED32890.1| exodeoxyribonuclease III [gamma proteobacterium NOR5-3]
Length = 267
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 32/135 (23%), Gaps = 23/135 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
E + + F+I D+N +I + + +
Sbjct: 134 MELFLEHLRVLKRKRREFIICADWNTCHQNIDLRNWRANQKNSGFLPEERAWLDQIYDEI 193
Query: 50 ---GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
E + R ++ + +I S
Sbjct: 194 GFVDSFRVADTEPDRYTWWSNRGQAWANNVGW--RLDYQMITPKLVPAVSGASIYT--EE 249
Query: 107 KLSTHCPLTIEYDFE 121
+ S H P +E++ E
Sbjct: 250 RFSDHAPQIMEFELE 264
>gi|308179822|ref|YP_003923950.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308045313|gb|ADN97856.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 254
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 31/124 (25%), Gaps = 23/124 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQ---- 57
+ P + GD N +I + + ++ G F
Sbjct: 133 LSANKPLIFCGDLNVAHENIDLKNWHSNHHSAGFTDEERTKFDRLLAAGYTDTFRHFYPD 192
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + R + + D +++ + S HCP+ ++
Sbjct: 193 QTDIYSWWSYRGHARDNNSGWRIDYFITSQQLDSQLLNARIHNEIFG----SDHCPVELD 248
Query: 118 YDFE 121
Sbjct: 249 IILP 252
>gi|254418698|ref|ZP_05032422.1| endonuclease/exonuclease/phosphatase family [Brevundimonas sp.
BAL3]
gi|196184875|gb|EDX79851.1| endonuclease/exonuclease/phosphatase family [Brevundimonas sp.
BAL3]
Length = 298
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 11/104 (10%), Positives = 26/104 (25%), Gaps = 5/104 (4%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
V+ GDFN ++ + + + D
Sbjct: 199 ATAAVVLMGDFNAGPDTAPYRRVLAAGLRDARAVSPVVFG-PAGTYNDFDIARDNDGV-- 255
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + S+ Y +S H P+ ++ ++
Sbjct: 256 --AIDHVFVAPGLSVERYGVPTDSFSGQVISDHFPVVVDVAPDE 297
>gi|218532583|ref|YP_002423399.1| endonuclease/exonuclease/phosphatase [Methylobacterium
chloromethanicum CM4]
gi|218524886|gb|ACK85471.1| Endonuclease/exonuclease/phosphatase [Methylobacterium
chloromethanicum CM4]
Length = 328
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 32/121 (26%), Gaps = 13/121 (10%)
Query: 5 QGEWLK--KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L W P V+ GDFN S + +
Sbjct: 219 QAKALLGPDWLGD-PACHAPTVLLGDFNATGWSRAYRRL---------SGRLTDARRLTG 268
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+R ++ + + ++ D R K S H P+ E E
Sbjct: 269 ERRWRRGGATFPSRFPLLRVDHVFVSERVAVERIAVVDTPLAR-KASDHLPVLAEIRIEP 327
Query: 123 G 123
G
Sbjct: 328 G 328
>gi|295088164|emb|CBK69687.1| Metal-dependent hydrolase [Bacteroides xylanisolvens XB1A]
Length = 316
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 29/128 (22%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+P ++ GDFN + + D + +
Sbjct: 190 KELPAILTGDFNVDQTHQSYDAFVSKGVLCDSYEKAGFRYAINGT-----FNDFDPNSFT 244
Query: 79 DRDNKNFLIDNSFSIVSY------------------------DQSDLDTRRSKLSTHCPL 114
+ + + SF + Y + + S H P+
Sbjct: 245 ESRIDHVFVSPSFHVKKYGVLTDTYRSIVGKGEKKQANDCPEEIDIKTYQARTPSDHFPV 304
Query: 115 TIEYDFEK 122
+E +FE+
Sbjct: 305 KVELEFEQ 312
>gi|224537627|ref|ZP_03678166.1| hypothetical protein BACCELL_02509 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520769|gb|EEF89874.1| hypothetical protein BACCELL_02509 [Bacteroides cellulosilyticus
DSM 14838]
Length = 284
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 27/116 (23%), Gaps = 6/116 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L + I + +P VI GDFN ++S + M
Sbjct: 172 RESAVLLLAKIRE-IASDLPVVIMGDFNGTVDSDPISVLTEGGMQNTYSTSDVVYGPA-- 228
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ ++ + LS H P+
Sbjct: 229 -WSFHDFG--RIPVEERQLIDFIFVNGQVVANKFRVIADKPDNGYLSDHAPILANL 281
>gi|153000336|ref|YP_001366017.1| PKD domain-containing protein [Shewanella baltica OS185]
gi|151364954|gb|ABS07954.1| PKD domain containing protein [Shewanella baltica OS185]
Length = 944
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 36/139 (25%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ +W ++ ++ GD N T L ++
Sbjct: 649 RAATAAGQWISEQY-PDQGILLIGDLNAYAKEDPLTALGNAGFSE---LFAKLEKPNPYS 704
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDLDTRRS 106
V LD+ + + + + ++ Y+ Q T
Sbjct: 705 YVFSAESGQLDHALANTALLDKVVDVTEWHINTDEPRVLDYNEEFKTPTQIQDLFATDAY 764
Query: 107 KLSTHCPLTIEYDFEKGNV 125
+ S H P+ I E V
Sbjct: 765 RSSDHDPVVISLLLEAEKV 783
>gi|304411405|ref|ZP_07393019.1| PKD domain containing protein [Shewanella baltica OS183]
gi|307305273|ref|ZP_07585021.1| PKD domain containing protein [Shewanella baltica BA175]
gi|304350260|gb|EFM14664.1| PKD domain containing protein [Shewanella baltica OS183]
gi|306911576|gb|EFN42001.1| PKD domain containing protein [Shewanella baltica BA175]
Length = 944
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 36/139 (25%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ +W ++ ++ GD N T L ++
Sbjct: 649 RAATAAGQWISEQY-PDQGVLLIGDLNAYAKEDPLTALGNAGFSE---LFAKLEKPNPYS 704
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDLDTRRS 106
V LD+ + + + + ++ Y+ Q T
Sbjct: 705 YVFSAESGQLDHALANAALLDKVVDVTEWHINTDEPRVLDYNEEFKTPAQIQDLFATDAY 764
Query: 107 KLSTHCPLTIEYDFEKGNV 125
+ S H P+ I E V
Sbjct: 765 RSSDHDPVVISLLLEAEKV 783
>gi|289706866|ref|ZP_06503207.1| endonuclease/exonuclease/phosphatase family protein [Micrococcus
luteus SK58]
gi|289556416|gb|EFD49766.1| endonuclease/exonuclease/phosphatase family protein [Micrococcus
luteus SK58]
Length = 925
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 10/127 (7%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q E L +A++ ++ GDFN G L
Sbjct: 717 QAEALVAFAERMKAETGTDRVLLMGDFNAYEKEDPIRVLEAAGYVSQGALTGEYSYAFGG 776
Query: 63 C-------NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-LDTRRSKLSTHCPL 114
+++ I N N + +S +Y D + + S H P+
Sbjct: 777 AVGSLDGIYASPSAAAAITGQDIWMINANESVALEYSRHNYVAEDLYSADQWRSSDHNPI 836
Query: 115 TIEYDFE 121
+ +
Sbjct: 837 LVGLQLD 843
>gi|254561286|ref|YP_003068381.1| hypothetical protein METDI2865 [Methylobacterium extorquens DM4]
gi|254268564|emb|CAX24521.1| hypothetical protein, putative 5'-nucleotidase domain
[Methylobacterium extorquens DM4]
Length = 2796
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/135 (10%), Positives = 34/135 (25%), Gaps = 21/135 (15%)
Query: 6 GEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L +W + ++ GDFN +
Sbjct: 1499 ATALAQWVSMRPTGTQDSDTLLLGDFNAYLKEDALDILKAAGFTNLAEDRLANP----YS 1554
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------------SKL 108
V +LD+ + + + ++ D++D ++
Sbjct: 1555 YVFDGAYGALDHALASASLNRQVTGVTEWHINADEADAIDYNLDFGRSPSSFDGRSPARE 1614
Query: 109 STHCPLTIEYDFEKG 123
S H P+ + ++
Sbjct: 1615 SDHDPVLVGLRLDQT 1629
>gi|240138687|ref|YP_002963159.1| hypothetical protein MexAM1_META1p2085 [Methylobacterium extorquens
AM1]
gi|240008656|gb|ACS39882.1| hypothetical protein, putative 5'-nucleotidase domain
[Methylobacterium extorquens AM1]
Length = 2794
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/135 (10%), Positives = 34/135 (25%), Gaps = 21/135 (15%)
Query: 6 GEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L +W + ++ GDFN +
Sbjct: 1497 ATALAQWVSMRPTGTQDSDTLLLGDFNAYLKEDALDILKAAGFTNLAEDRLANP----YS 1552
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------------SKL 108
V +LD+ + + + ++ D++D ++
Sbjct: 1553 YVFDGAYGALDHALASASLNRQVTGVTEWHINADEADAIDYNLDFGRSPSSFDGRSPARE 1612
Query: 109 STHCPLTIEYDFEKG 123
S H P+ + ++
Sbjct: 1613 SDHDPVLVGLRLDQT 1627
>gi|160874973|ref|YP_001554289.1| PKD domain-containing protein [Shewanella baltica OS195]
gi|160860495|gb|ABX49029.1| PKD domain containing protein [Shewanella baltica OS195]
gi|315267207|gb|ADT94060.1| Endonuclease/exonuclease/phosphatase [Shewanella baltica OS678]
Length = 944
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 36/139 (25%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ +W ++ ++ GD N T L ++
Sbjct: 649 RAATAAGQWISEQY-PDQGVLLIGDLNAYAKEDPLTALGNAGFSE---LFAKLEKPNPYS 704
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDLDTRRS 106
V LD+ + + + + ++ Y+ Q T
Sbjct: 705 YVFSAESGQLDHALANAALLDKVVDVTEWHINTDEPRVLDYNEEFKTPAQIQDLFATDAY 764
Query: 107 KLSTHCPLTIEYDFEKGNV 125
+ S H P+ I E V
Sbjct: 765 RSSDHDPVVISLLLEAEKV 783
>gi|242219979|ref|XP_002475762.1| predicted protein [Postia placenta Mad-698-R]
gi|220725034|gb|EED79041.1| predicted protein [Postia placenta Mad-698-R]
Length = 415
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/141 (9%), Positives = 32/141 (22%), Gaps = 39/141 (27%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD-----------------FWQKMDPD-------- 49
+++ P + GD N + + F + ++P
Sbjct: 275 RELDMRKPVIWTGDLNVAPTELDLANPKTNWNKTPGYTEVETSAFARILNPSSAAASDAA 334
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ + + R + D + +
Sbjct: 335 SQDDAAPGKFVDVWRKLHPDDRHYTYFSYRFNCRMKGIGWRLDMFVVSERIEERVKMCEI 394
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
+ S HCP+ +E +
Sbjct: 395 ---RSEIYGASDHCPVALEIE 412
>gi|118594300|ref|ZP_01551647.1| Exodeoxyribonuclease III:Exodeoxyribonuclease III xth
[Methylophilales bacterium HTCC2181]
gi|118440078|gb|EAV46705.1| Exodeoxyribonuclease III:Exodeoxyribonuclease III xth
[Methylophilales bacterium HTCC2181]
Length = 259
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 36/132 (27%), Gaps = 21/132 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E + + +KI + GDFN + I + + K+
Sbjct: 127 EDIMRILKKKISQTKYVAVCGDFNIAHHEIDLKNFKGNKKNSGFLPEERDWLSTLFSKLQ 186
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + N+ + + + + + + S + +
Sbjct: 187 WVDVYRKISPHTTEDAYTWWSNRGQAWVNNVGWRIDYQIANQNLANKALSASVYKEK--R 244
Query: 108 LSTHCPLTIEYD 119
S H PL I Y
Sbjct: 245 FSDHAPLIINYS 256
>gi|281421496|ref|ZP_06252495.1| AP endonuclease domain protein [Prevotella copri DSM 18205]
gi|281404568|gb|EFB35248.1| AP endonuclease domain protein [Prevotella copri DSM 18205]
Length = 365
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 31/118 (26%), Gaps = 23/118 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ E + K+ Q + ++ GDFN S + C
Sbjct: 263 EAEAVAKYIQQHKEQS--IILCGDFNDGPISYAHRTIAKDL---------------TDCY 305
Query: 65 VIKRNKSSL--DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N + + N + + + D +S H P+ +
Sbjct: 306 IASGNGPGISYHHGGFFVRIDNIMCSDDWEPYECKVDDKIA----VSDHYPIICKLKM 359
>gi|294674945|ref|YP_003575561.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
ruminicola 23]
gi|294472469|gb|ADE81858.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
ruminicola 23]
Length = 364
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 30/119 (25%), Gaps = 19/119 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ E + + + P ++ GDFN S Q + QE
Sbjct: 264 EAEAVHDYIEAH--RHYPIIVCGDFNDNPISYS-RRTIAQGLTDC------YQETGKGIG 314
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ K + L+ + F + S H P+ +
Sbjct: 315 LSYNQKGF------FVRIDHILVSDHFEPYNCHIDSKMD----ASDHNPIICTLKMKSN 363
>gi|225016166|ref|ZP_03705370.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
gi|224951039|gb|EEG32248.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
Length = 253
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 28/118 (23%), Gaps = 23/118 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQ 57
+++ P V+ GD N N I + + +
Sbjct: 132 RLQESKPVVVCGDLNVAHNEIDLKNYKTNRGNAGFSDEERGKMTELLQSGLTDSFRYLYP 191
Query: 58 EKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
EK + + FL + + + S HCP+
Sbjct: 192 EKTGCYTWWSYMFNARANNAGW--RIDYFLTSDVLKDQI--EDSVIYSEVLGSDHCPI 245
>gi|261404204|ref|YP_003240445.1| 5'-Nucleotidase domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261280667|gb|ACX62638.1| 5'-Nucleotidase domain protein [Paenibacillus sp. Y412MC10]
Length = 2084
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 10/126 (7%)
Query: 3 SQQ-GEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q + + V+ GD N + ++ LI K
Sbjct: 1021 RHQIAAVVNSFVKDVVSANPDANIVVLGDLNDFQFTETANILKGNEL---DNLIETLPLK 1077
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
E N LD+ ++ ++ + + +D + ++S H P+ + D
Sbjct: 1078 EQYTYTYDGNSQVLDHILVSKNLTRSTQVDIVHL----NADFPASKGRVSDHDPVVAQID 1133
Query: 120 FEKGNV 125
++ V
Sbjct: 1134 LKEEAV 1139
>gi|58580132|ref|YP_199148.1| exodeoxyribonuclease III [Xanthomonas oryzae pv. oryzae KACC10331]
gi|58424726|gb|AAW73763.1| exodeoxyribonuclease III [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 285
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/142 (11%), Positives = 37/142 (26%), Gaps = 33/142 (23%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+WL+ D+ + +G +V+ GD+N ++ + + +
Sbjct: 146 MQWLRPILDEWLASGRQYVLCGDWNIVRTALDIKNWKSNQKNSGCLPPERDWLNGLCADV 205
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + R + + L+
Sbjct: 206 PDDANAAEGRGWVDSYRVLHPQGQDYTWWSNRGAARTNNVGW--RIDYQLVTPGLRDTLR 263
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
S R + S H P ++Y
Sbjct: 264 ACSIY--REERFSDHAPYIVDY 283
>gi|159030909|emb|CAO88590.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 1562
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 35/143 (24%), Gaps = 30/143 (20%)
Query: 6 GEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L+ W D ++I GD N L+ ++
Sbjct: 663 ALALRDWIATDPTNSGDRDYLIIGDLNAYAQEDPIRALESAGY---TNLVSQFGGIDAYS 719
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQSDLDTRR---------- 105
V LD+ + + + + ++ Y+ +D
Sbjct: 720 FVFDGQAGYLDHALANASLASQVTGVAEWHINADEPNVFDYNDDIIDPGENPSNPPLNPS 779
Query: 106 -------SKLSTHCPLTIEYDFE 121
+ S H P+ I D
Sbjct: 780 ALYQVNPYRTSDHDPVLIGLDLS 802
>gi|148235150|ref|NP_001082408.1| similar to deoxyribonuclease I-like 3 [Xenopus laevis]
gi|49118064|gb|AAH73008.1| LOC398451 protein [Xenopus laevis]
Length = 295
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 41/119 (34%), Gaps = 4/119 (3%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D ++ F+ GD N + + ++ + + +
Sbjct: 160 REIDELYDVYLDVKEKWDSENFIFMGDLNAGCSYVPKKSWKNIRLRNHTEFVWLIGDNKD 219
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
T N + V+ + ++ S S+ + + T L S H P+ ++
Sbjct: 220 TTVKSSTNCAYDRIVVVGDKLISSIVPASASVFDFMAAYGLTEEQALEVSDHFPVEVQL 278
>gi|85860240|ref|YP_462442.1| endonuclease/exonuclease/phosphatase family protein [Syntrophus
aciditrophicus SB]
gi|85723331|gb|ABC78274.1| endonuclease/exonuclease/phosphatase family protein [Syntrophus
aciditrophicus SB]
Length = 335
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 33/127 (25%), Gaps = 9/127 (7%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-----DFWQKMDPDGLLIRFPQ 57
+ L + ++ P V+ GDFN + S K+ L
Sbjct: 192 KKSVILLTRHIHER-PFTEPLVLTGDFNSRERSAAIQYLKGEVPLKIKIKAKVLNPVPLM 250
Query: 58 EKESTCNVIKRNKS---SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ RN + + + S ++ + + S H PL
Sbjct: 251 DTFRVKYPDNRNIATFHGYRSYFFRFKIDYIFVSGSARVIDAEIIQRRWGKCYPSDHFPL 310
Query: 115 TIEYDFE 121
D
Sbjct: 311 LAHVDLP 317
>gi|282890589|ref|ZP_06299112.1| hypothetical protein pah_c022o186 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499586|gb|EFB41882.1| hypothetical protein pah_c022o186 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 330
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 11/129 (8%), Positives = 33/129 (25%), Gaps = 16/129 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-------------QKMDPDGL 51
+ + + + + +P ++ GD N N D + + ++
Sbjct: 200 EARLISEHIQKH-ASHLPIILTGDLNTFPNRPDLIDLPFYDGDYILSILKGKKFLNDAKD 258
Query: 52 LIRFPQEKESTCNVI--KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ K + + + ++ N + + S
Sbjct: 259 ISLLGHLGPLATFTSNGKDSTPFKGIGLPGVFLDHIMVSNDIQVWVHAVQAGTVEGHFPS 318
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 319 DHMPVIADI 327
>gi|170782595|ref|YP_001710928.1| hypothetical protein CMS_2252 [Clavibacter michiganensis subsp.
sepedonicus]
gi|169157164|emb|CAQ02344.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 264
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 28/113 (24%), Gaps = 4/113 (3%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + + Q++ +G P V+ GDFN D +
Sbjct: 148 KSADLITERL-QEVASGAPVVVTGDFNAPAEESAAYDILTRDAGLADTWTTAAHHATPGI 206
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ D L + +V + S H +
Sbjct: 207 GT---FTAYGDPVPEGERIDWILAGDGVEVVDSAINPYTYEGRSPSDHAAVQA 256
>gi|148229324|ref|NP_001079750.1| deoxyribonuclease I-like 3 [Xenopus laevis]
gi|3757883|gb|AAC64266.1| deoxyribonuclease gamma [Xenopus laevis]
Length = 295
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 39/119 (32%), Gaps = 4/119 (3%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D ++ F+ GD N + + ++ + +
Sbjct: 160 REIDELYDVYLDVKQKWNSENFIFMGDLNAGCSYVPKKSWKNIRLRNHTEFVWLIGDNND 219
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
T N + V+ + ++ S ++ + + T L S H P+ +
Sbjct: 220 TTVKSSTNCAYDRIVVVGEKLVSSIVPGSANVFDFMVAYGLTEEQALEVSDHFPIEVRL 278
>gi|257093975|ref|YP_003167616.1| Endonuclease/exonuclease/phosphatase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257046499|gb|ACV35687.1| Endonuclease/exonuclease/phosphatase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 294
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 40/128 (31%), Gaps = 12/128 (9%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q +L + +++ P +IAGDFN + ++ + +
Sbjct: 145 RQATFLADFVQREVPASAPLIIAGDFNDWQQRVD--GLLRDRLGVQEVAVAATSPPPEGG 202
Query: 64 ------NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT----RRSKLSTHCP 113
+ + + +L + + + D+ ++ S H P
Sbjct: 203 LLDRLLSWRPASDAQSGVSRTFPSFAPWLTLDRIYVRGFRVLDMQVPQGLAWARCSDHAP 262
Query: 114 LTIEYDFE 121
L E + +
Sbjct: 263 LIAELELD 270
>gi|58040696|ref|YP_192660.1| exodeoxyribonuclease III [Gluconobacter oxydans 621H]
gi|58003110|gb|AAW62004.1| Exodeoxyribonuclease III [Gluconobacter oxydans 621H]
Length = 282
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/122 (10%), Positives = 24/122 (19%), Gaps = 22/122 (18%)
Query: 19 TGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDGLLIRFPQE 58
++ GD N I E
Sbjct: 160 PPARSILVGDLNIAPLEHDVWSHKQLLKIVSHTPPEIERLKAWMATGFQDAMRTITPEPE 219
Query: 59 KESTCNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ RN+ D+ D + + S H P+ ++
Sbjct: 220 -KLYTWWSYRNRDWKKSNRGRRLDHVWMTPDLMPGLRNVRVLQEVRDWGSPSDHVPVVLD 278
Query: 118 YD 119
+D
Sbjct: 279 FD 280
>gi|229091174|ref|ZP_04222397.1| hypothetical protein bcere0021_19920 [Bacillus cereus Rock3-42]
gi|228692305|gb|EEL46041.1| hypothetical protein bcere0021_19920 [Bacillus cereus Rock3-42]
Length = 213
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 40/131 (30%), Gaps = 11/131 (8%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +Q + W + + ++ GDFN S+ + +
Sbjct: 85 IRQEQMNTVNNWIENRASDYE--LLCGDFNDDPFSMVHQYLIRKHWIDVAQFKEIEENMI 142
Query: 61 STCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSI--------VSYDQSDLDTRRSKLSTH 111
+ + R N + D ++ +I + + + S L + S H
Sbjct: 143 AQPTLDYRKNPNLKDDVKQEKRYDWIMIQENAAFEFPTIENVSIFGDSALTSTGMFPSEH 202
Query: 112 CPLTIEYDFEK 122
+ ++ F +
Sbjct: 203 YGVFVDLKFNE 213
>gi|315498220|ref|YP_004087024.1| endonuclease/exonuclease/phosphatase [Asticcacaulis excentricus CB
48]
gi|315416232|gb|ADU12873.1| Endonuclease/exonuclease/phosphatase [Asticcacaulis excentricus CB
48]
Length = 275
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 4/103 (3%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
G ++ GDFN + S L
Sbjct: 177 PGAHLIVLGDFNTGMGSAPYKRFTA----ETSPLKDSRVASTRRFGPTGTFNGFDIRQTD 232
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ +D + + S+ +S H P+ + + +
Sbjct: 233 GEAIDHIFVDRTLMVKSFATLTDSYSGKVISDHFPIVADIELK 275
>gi|10957459|ref|NP_051603.1| extracellular nuclease, putative [Deinococcus radiodurans R1]
gi|6460888|gb|AAF12592.1|AE001826_61 extracellular nuclease, putative [Deinococcus radiodurans R1]
Length = 1067
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/144 (11%), Positives = 37/144 (25%), Gaps = 30/144 (20%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + D ++ ++ GDFN + L ++
Sbjct: 651 RQAQALLGFVDTVKQKSGDQDVLLLGDFNAYGAEDPIKVLQGGGFES---LNLRIPAEDR 707
Query: 62 TCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------------- 97
LD+ + ++ + + I Y+
Sbjct: 708 YSYQFNGLFGYLDHALASQNLSAQVSGITEWHVNSDEPVIADYNTEFKKVAGCTGTNCTG 767
Query: 98 -QSDLDTRRSKLSTHCPLTIEYDF 120
T + S H P+ + +
Sbjct: 768 IDLFDPTNPFRASDHDPVLVGLNL 791
>gi|84622132|ref|YP_449504.1| exodeoxyribonuclease III [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84366072|dbj|BAE67230.1| exodeoxyribonuclease III [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 266
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/142 (11%), Positives = 37/142 (26%), Gaps = 33/142 (23%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+WL+ D+ + +G +V+ GD+N ++ + + +
Sbjct: 127 MQWLRPILDEWLASGRQYVLCGDWNIVRTALDIKNWKSNQKNSGCLPPERDWLNGLCADV 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + R + + L+
Sbjct: 187 PEDANAAEGRGWVDSYRVLHPQGQDYTWWSNRGAARTNNVGW--RIDYQLVTPGLRDTLR 244
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
S R + S H P ++Y
Sbjct: 245 ACSIY--REERFSDHAPYIVDY 264
>gi|255590873|ref|XP_002535386.1| conserved hypothetical protein [Ricinus communis]
gi|223523279|gb|EEF26997.1| conserved hypothetical protein [Ricinus communis]
Length = 249
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 8/124 (6%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + L + G P VIAGDFN N + + + + +
Sbjct: 127 RRQTQALIAAVKESAPNGEPVVIAGDFNDWRN--TLSAELYNALGVVEAFDEIEGSNTAL 184
Query: 63 CNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR----RSKLSTHCPLTI 116
+++ R KSS+ F + + + + +KLS H P+
Sbjct: 185 GEIMRKLRRKSSIVPARTFPAALPFFRLDRIYVRGFKVDTAEVMHGSLWAKLSDHAPIVA 244
Query: 117 EYDF 120
Sbjct: 245 SLTL 248
>gi|84386405|ref|ZP_00989433.1| putative phospholipase C precursor [Vibrio splendidus 12B01]
gi|84378829|gb|EAP95684.1| putative phospholipase C precursor [Vibrio splendidus 12B01]
Length = 448
Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 9/130 (6%)
Query: 1 MLSQQGEWLKKWADQKIKTG-IPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQE 58
+ +QQ E ++ + D + G P VIAGD N I + + +D + + + +
Sbjct: 314 VRAQQFEQMRAFIDAQYINGAEPVVIAGDLNVDKIKYLPEYEDMLKTLVSEEVPRFKSYP 373
Query: 59 KESTC----NVIK---RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
V + K LDY + + + +S I+ + + LS H
Sbjct: 374 YTFDGAVNAWVTDEEKKQKEYLDYVLYSTSHLSPDSSSSKVIIPRSTNVDLFTKYDLSDH 433
Query: 112 CPLTIEYDFE 121
++ F
Sbjct: 434 FAVSARLTFS 443
>gi|326315164|ref|YP_004232836.1| exodeoxyribonuclease III Xth [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323372000|gb|ADX44269.1| exodeoxyribonuclease III Xth [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 271
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 25/128 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-----------------------GLL 52
++K F++ GD N I + + + +
Sbjct: 144 RVKEEREFILCGDVNIAHQQIDLKNWRSNQKNSGFLPEEREWMTKLLHQTDPGGGLVDVY 203
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ T N+ + L + + ++ +S ++ K S H
Sbjct: 204 RLLQPDTTETAYTWWSNRGQAYANNVGWRLDYHLATPAIAALARTESIY--KQQKFSDHA 261
Query: 113 PLTIEYDF 120
P+T+ YD
Sbjct: 262 PITVGYDL 269
>gi|77361838|ref|YP_341413.1| periplasmic calcium binding protein [Pseudoalteromonas haloplanktis
TAC125]
gi|76876749|emb|CAI87971.1| conserved protein of unknown function ; putative periplasmic
calcium binding protein [Pseudoalteromonas haloplanktis
TAC125]
Length = 906
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 31/132 (23%), Gaps = 21/132 (15%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
W + K ++ GD N + +
Sbjct: 640 ANAYASWLNSKPTGIDDEDIILIGDLNAYAMEDPIR--AFADNGYKNAVAELDGNTLGYS 697
Query: 64 NVIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQ---------SDLDTRRS 106
SLDY ++ + + +++ Y+ S
Sbjct: 698 YSFSGRAGSLDYALVSPSLLSKIVATNDWHINADEPTLLDYNVEFKSDAQQSSLYAAGPY 757
Query: 107 KLSTHCPLTIEY 118
+ S H P+ ++
Sbjct: 758 RASDHDPIIVDI 769
>gi|315656371|ref|ZP_07909260.1| exodeoxyribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|315492930|gb|EFU82532.1| exodeoxyribonuclease III [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length = 294
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 34/146 (23%), Gaps = 30/146 (20%)
Query: 6 GEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDD----------------FWQKMD 47
+ L A + P +I GDFN + + F
Sbjct: 148 VQQLSARAMAGAGSDTPQEALICGDFNIVRTARDIKNWKPNHNKTSGVMDEEIAFLDAWM 207
Query: 48 PDGL------------LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS 95
D L R K+ + D + S
Sbjct: 208 ADTLSGSKRLPCVDVGRALAGDTDGPYTWWSWRGKAYDNNAGWRLDYHMATPGLAGQAQS 267
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ + H P+T+ YDF
Sbjct: 268 AAVYRAPAYDARFTDHAPVTVTYDFP 293
>gi|229489432|ref|ZP_04383295.1| exodeoxyribonuclease III [Rhodococcus erythropolis SK121]
gi|229323529|gb|EEN89287.1| exodeoxyribonuclease III [Rhodococcus erythropolis SK121]
Length = 281
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 27/121 (22%), Gaps = 21/121 (17%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------------------GLLIRFPQE- 58
V++GD+N + + K +
Sbjct: 161 DRHVVVSGDWNIAHTELDLKNWKTNKKSSGFLPEERAWMDLLFAEDSAWVDVFRTLHPGV 220
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R K+ + D + + + + S H P+T+ Y
Sbjct: 221 DGPYSWWSYRGKAFDNDSGWRIDYQVATRGYAERAKVALVERAEAYDLRWSDHAPVTVSY 280
Query: 119 D 119
Sbjct: 281 R 281
>gi|254522062|ref|ZP_05134117.1| exodeoxyribonuclease III [Stenotrophomonas sp. SKA14]
gi|219719653|gb|EED38178.1| exodeoxyribonuclease III [Stenotrophomonas sp. SKA14]
Length = 268
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 39/144 (27%), Gaps = 33/144 (22%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
EWL+ ++ ++G +V+ GD+N +++ + + +
Sbjct: 129 MEWLRPILEEWARSGRDYVLCGDWNIVRSALDIKNWKSNQKNSGCLPEERDWLNALCADH 188
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
E R + + D + + S
Sbjct: 189 GQATDVAAGRGWADAYRLLNPTGEDYTWWSNRGAARANNVGWRIDYQFITPGLRDRLRSC 248
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
R + S H P ++YD
Sbjct: 249 SI----YRDERFSDHAPFIVDYDL 268
>gi|194364073|ref|YP_002026683.1| exodeoxyribonuclease III Xth [Stenotrophomonas maltophilia R551-3]
gi|194346877|gb|ACF50000.1| exodeoxyribonuclease III Xth [Stenotrophomonas maltophilia R551-3]
Length = 266
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 39/144 (27%), Gaps = 33/144 (22%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
EWL+ ++ ++G +V+ GD+N +++ + + +
Sbjct: 127 MEWLRPILEEWARSGRDYVLCGDWNIVRSALDIKNWKSNQKNSGCLPEERDWLNALCADH 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
E R + + D + + S
Sbjct: 187 GQATDVATGRGWADAYRLLNPTGEDYTWWSNRGAARANNVGWRIDYQFITPGLRDRLRSC 246
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
R + S H P ++YD
Sbjct: 247 SI----YRDERFSDHAPFIVDYDL 266
>gi|182414371|ref|YP_001819437.1| endonuclease/exonuclease/phosphatase [Opitutus terrae PB90-1]
gi|177841585|gb|ACB75837.1| Endonuclease/exonuclease/phosphatase [Opitutus terrae PB90-1]
Length = 257
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 21/123 (17%)
Query: 4 QQGEWLKKWADQKIKTGI-----PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
+Q L W +K + P ++ GD N S T + G + P +
Sbjct: 151 RQIGRLLAWLREKQEHSRGRWRVPAIVCGDLNNPGTSADATAALLSHLSDYGEYVLHPTK 210
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + R + + + + LS H P+ +++
Sbjct: 211 GRTFPSP-----------LPGRLLDFVFLPGACNASHCEIVRCF-----LSDHRPVAVDF 254
Query: 119 DFE 121
Sbjct: 255 TLP 257
>gi|28377662|ref|NP_784554.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|254555843|ref|YP_003062260.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|28270495|emb|CAD63397.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|254044770|gb|ACT61563.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
Length = 254
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 31/124 (25%), Gaps = 23/124 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRFPQ---- 57
+ P + GD N +I + + ++ G F
Sbjct: 133 LSANKPLIFCGDLNVAHENIDLKNWRSNHHSAGFTDEERTKFDRLLAAGYTDTFRHFYPD 192
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + R + + D +++ + S HCP+ ++
Sbjct: 193 QTDIYSWWSYRGHARDNNSGWRIDYFITSQQLDSQLLNARIHNEIFG----SDHCPVELD 248
Query: 118 YDFE 121
Sbjct: 249 IILP 252
>gi|149197514|ref|ZP_01874565.1| hypothetical protein LNTAR_00995 [Lentisphaera araneosa HTCC2155]
gi|149139532|gb|EDM27934.1| hypothetical protein LNTAR_00995 [Lentisphaera araneosa HTCC2155]
Length = 266
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 13/123 (10%)
Query: 5 QGEWLKKWADQKIKT------GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
Q LK D+ + ++ GDFN KI S T
Sbjct: 141 QARNLKSHIDRLREKYLSKEKKKNIIVLGDFNDKIESPALTRLQEAGFHACWK-DLNMNL 199
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+++ N ++ + + + + + S + + LS H P+ E
Sbjct: 200 EKAFTW----NPNNPKSGLKEGVIDHIFYKSKSAKASKAEIIEL--QPPLSDHKPVWAEI 253
Query: 119 DFE 121
DF+
Sbjct: 254 DFK 256
>gi|302884128|ref|XP_003040961.1| hypothetical protein NECHADRAFT_54591 [Nectria haematococca mpVI
77-13-4]
gi|256721855|gb|EEU35248.1| hypothetical protein NECHADRAFT_54591 [Nectria haematococca mpVI
77-13-4]
Length = 303
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 10/118 (8%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL----IRFPQEKESTCN 64
L + +P +AGD N +S Q D + Q+ + +
Sbjct: 187 LADRWSSHKRESLPVFVAGDLNATPDSPAYNLLATQLYDLKYQVPSSKRFGHQKTYTGFS 246
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
V + + LD+ + + YD +S H P+ ++ + +
Sbjct: 247 VDESDDMDLDHMFVRDPMDISFKSFAVLNTRYD------DGIFISDHRPVVVDMEITQ 298
>gi|27881735|gb|AAH43839.1| LOC398451 protein [Xenopus laevis]
Length = 303
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 41/119 (34%), Gaps = 4/119 (3%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D ++ F+ GD N + + ++ + + +
Sbjct: 168 REIDELYDVYLDVKEKWDSENFIFMGDLNAGCSYVPKKSWKNIRLRNHTEFVWLIGDNKD 227
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
T N + V+ + ++ S S+ + + T L S H P+ ++
Sbjct: 228 TTVKSSTNCAYDRIVVVGDKLISSIVPTSASVFDFMAAYGLTEEQALEVSDHFPVEVQL 286
>gi|85714109|ref|ZP_01045098.1| exodeoxyribonuclease III xth [Nitrobacter sp. Nb-311A]
gi|85699235|gb|EAQ37103.1| exodeoxyribonuclease III xth [Nitrobacter sp. Nb-311A]
Length = 271
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 27/123 (21%), Gaps = 23/123 (18%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLIRFPQE- 58
G V+ GD N + + + +
Sbjct: 149 NGDRHVLVGDLNVAPHENDVWSHRQLLKIVSHTPIECEKLLGVQKHGNWVDIARARIPMS 208
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLSTHCPLTI 116
++ R + R + + + + + + S H P+T
Sbjct: 209 EKIYTWWSYR-AADWIASDRGRRLDHIWVSEALRSGIRDFRITRDARGWQRPSDHVPVTA 267
Query: 117 EYD 119
D
Sbjct: 268 VID 270
>gi|288922333|ref|ZP_06416526.1| Endonuclease/exonuclease/phosphatase [Frankia sp. EUN1f]
gi|288346325|gb|EFC80661.1| Endonuclease/exonuclease/phosphatase [Frankia sp. EUN1f]
Length = 321
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 13/114 (11%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L + + +P V+AGDFN ++ + + ++
Sbjct: 220 DQLDHLRTEVEASRLPVVLAGDFNATRDNRPLRELISAGVRDAHDVV--------GAGWT 271
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+S+ + L +F+I Y S H P+ +
Sbjct: 272 PTWNASMFAVPPIARIDHILASPAFAITGYQI-----GSEFGSDHKPVLADLAM 320
>gi|126653851|ref|ZP_01725711.1| endonuclease/exonuclease/phosphatase family protein [Bacillus sp.
B14905]
gi|126589639|gb|EAZ83777.1| endonuclease/exonuclease/phosphatase family protein [Bacillus sp.
B14905]
Length = 1502
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 42/124 (33%), Gaps = 9/124 (7%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + + + + V GDFN + Q M +I + +
Sbjct: 943 KKIAQIVYDFVKDIKTNNKDANIVSLGDFNDYQFAEALKIHEGQLM---TNMINKVDDSD 999
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V + N LD+ ++ + N + I +D + S H P+ ++ D
Sbjct: 1000 RYTYVYQGNSQVLDHILVSNNLVNKTEIDILHI----NADFTDMAGRASDHDPVMVQIDL 1055
Query: 121 EKGN 124
+ G+
Sbjct: 1056 KSGS 1059
>gi|120608991|ref|YP_968669.1| exodeoxyribonuclease III Xth [Acidovorax citrulli AAC00-1]
gi|120587455|gb|ABM30895.1| exodeoxyribonuclease III Xth [Acidovorax citrulli AAC00-1]
Length = 264
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 37/128 (28%), Gaps = 25/128 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-----------------------GLL 52
++K F++ GD N I + + + +
Sbjct: 137 RVKEEREFILCGDVNIAHQQIDLKNWRSNQKNSGFLPEEREWMTKLLHKTDPGGGLVDVY 196
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ T N+ + L + + ++ +S ++ K S H
Sbjct: 197 RLLQPDTTETAYTWWSNRGQAYANNVGWRLDYHLATPAIAALARTESIY--KQQKFSDHA 254
Query: 113 PLTIEYDF 120
P+T+ Y+
Sbjct: 255 PITVGYEL 262
>gi|226355160|ref|YP_002784900.1| exodeoxyribonuclease III [Deinococcus deserti VCD115]
gi|226317150|gb|ACO45146.1| putative exodeoxyribonuclease III [Deinococcus deserti VCD115]
Length = 260
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 26/122 (21%), Gaps = 25/122 (20%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES---------- 61
W + P VI GD+N I + + + L
Sbjct: 140 WVQALLDEQTPVVIGGDYNIAHREIDLKNWRSNRKNSGFLPHEREWMTAHLSAGLVDCHR 199
Query: 62 --------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
R + + D + +LS H P
Sbjct: 200 NCLGEAAEYTWWSNRGNAYANNVGWRIDYLL---SAGVQVRGVCVDREA----RLSDHAP 252
Query: 114 LT 115
LT
Sbjct: 253 LT 254
>gi|260664810|ref|ZP_05865661.1| endonuclease/exonuclease/phosphatase [Lactobacillus jensenii
SJ-7A-US]
gi|260561293|gb|EEX27266.1| endonuclease/exonuclease/phosphatase [Lactobacillus jensenii
SJ-7A-US]
Length = 291
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 35/131 (26%), Gaps = 17/131 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------TDDFW----QKMDPD 49
+Q L +I+ G + GDFN + D + +
Sbjct: 164 KKQLALLNHVMKAEIQKGNYVICGGDFNHAFGTKYVAHFKSEQKQHDWLAVLSQKDLASS 223
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
G+ + Q + + FL+ + VSY+
Sbjct: 224 GMRMITAQNADDVPTCRGSDIPYKKGVTYTTIVDGFLVSPNVQAVSYNIDTQFAYA---- 279
Query: 110 THCPLTIEYDF 120
H P+ + +
Sbjct: 280 DHNPVKLSFSL 290
>gi|237795265|ref|YP_002862817.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum Ba4 str. 657]
gi|229264066|gb|ACQ55099.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum Ba4 str. 657]
Length = 352
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 41/130 (31%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNR-KINSIGD--------TDDFWQKMDPDGL 51
+ QQ +LK + ++ K G ++ GD+N + D + +
Sbjct: 226 IRKQQLSFLKNYIIKEYKKGNYIIVGGDWNHLIPGTDPLMFKTTEKWPDWLQKIPNDFKP 285
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++ FL+ ++ + S ++ + + H
Sbjct: 286 EGFKWVADKNVPTTRTDATPYKKGENFTAVIDGFLVSDNIEVTSVKAHSMEFKNT---DH 342
Query: 112 CPLTIEYDFE 121
P+ +E+ +
Sbjct: 343 NPVNMEFKLK 352
>gi|238854506|ref|ZP_04644844.1| endonuclease/exonuclease/phosphatase family protein [Lactobacillus
jensenii 269-3]
gi|282934100|ref|ZP_06339379.1| endonuclease/exonuclease/phosphatase family protein [Lactobacillus
jensenii 208-1]
gi|238832859|gb|EEQ25158.1| endonuclease/exonuclease/phosphatase family protein [Lactobacillus
jensenii 269-3]
gi|281301847|gb|EFA94112.1| endonuclease/exonuclease/phosphatase family protein [Lactobacillus
jensenii 208-1]
Length = 369
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 35/131 (26%), Gaps = 17/131 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------TDDFW----QKMDPD 49
+Q L +I+ G + GDFN + D + +
Sbjct: 242 KKQLALLNHVMKAEIQKGNYVICGGDFNHAFGTKYVAHFKSEQKQHDWLAVLSQKDLASS 301
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
G+ + Q + + FL+ + VSY+
Sbjct: 302 GMRMITAQNADDVPTCRGSDIPYKKGVTYTTIVDGFLVSPNVQAVSYNIDTQFAYA---- 357
Query: 110 THCPLTIEYDF 120
H P+ + +
Sbjct: 358 DHNPVKLSFSL 368
>gi|50084486|ref|YP_045996.1| putative extracellular nuclease [Acinetobacter sp. ADP1]
gi|49530462|emb|CAG68174.1| putative extracellular nuclease [Acinetobacter sp. ADP1]
Length = 807
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 40/147 (27%), Gaps = 27/147 (18%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ E L +WA + + GD N + Q K++
Sbjct: 637 KAVEQLIQWAAKNPTRVQQPNILFLGDMNSYAKEDPILAFEKANYKVLLNDEKIGQGKQA 696
Query: 62 TCNVI--------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD------------- 100
V ++D+ + D + F+ ++ D+
Sbjct: 697 YSYVFGVSSNALGYGGAGNIDHAIADSNLYRFVKRAFVWHINADEPTALDYNEEYKTDEQ 756
Query: 101 ----LDTRRSKLSTHCPLTIEYDFEKG 123
+ S H P+ ++ D ++
Sbjct: 757 KTLFYADDAYRSSDHDPVIVDLDLKES 783
>gi|126174046|ref|YP_001050195.1| PKD domain-containing protein [Shewanella baltica OS155]
gi|125997251|gb|ABN61326.1| PKD domain containing protein [Shewanella baltica OS155]
Length = 944
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 36/139 (25%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ +W ++ ++ GD N T L ++
Sbjct: 649 RAATAAGQWISEQY-PDQGVLLIGDLNAYAKEDPLTALGNAGFSE---LFAKLEKSNPYS 704
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDLDTRRS 106
V LD+ + + + + ++ Y+ Q T
Sbjct: 705 YVFSAESGQLDHALANAALLDKVVDVTEWHINTDEPRVLDYNEEFKTPAQIQDLFATDAY 764
Query: 107 KLSTHCPLTIEYDFEKGNV 125
+ S H P+ I E V
Sbjct: 765 RSSDHDPVVISLLLEAEKV 783
>gi|166710372|ref|ZP_02241579.1| exodeoxyribonuclease III [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 266
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/142 (10%), Positives = 39/142 (27%), Gaps = 33/142 (23%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+WL+ D+ + +G +V+ GD+N ++ + + +
Sbjct: 127 MQWLRPILDEWLASGRQYVLCGDWNIVRTALDIKNWKSNQKNSGCLPPERDWLNGLCADV 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + R + + D + ++ +
Sbjct: 187 PEDANAAEGRGWVDSYRVLHPQGQDYTWWSNRGAARTNNVGWRIDYQLVTPCLRDTLKAC 246
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
R + S H P ++Y
Sbjct: 247 SI----YREERFSDHAPYIVDY 264
>gi|29653648|ref|NP_819340.1| exodeoxyribonuclease III [Coxiella burnetii RSA 493]
gi|29540910|gb|AAO89854.1| exodeoxyribonuclease III [Coxiella burnetii RSA 493]
Length = 259
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 23/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------DDFWQKMDPDGL 51
K + + F+I GD+N I D+ + K+
Sbjct: 131 KRLKNIVHSKRSFIICGDWNIVHKEIDIKNFKSNQKYSGCLPEERAWLDEVFTKVGLVDA 190
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
Q+ + R ++ +I + +S+ + + S H
Sbjct: 191 FRVVNQKPDQYTWWSSRGRAWEKNVGW--RIDYQVITSDLKNS--VKSERIYKDKRFSDH 246
Query: 112 CPLTIEYD 119
PL I+Y+
Sbjct: 247 APLIIDYE 254
>gi|167743665|ref|ZP_02416439.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 14]
gi|167899281|ref|ZP_02486682.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 7894]
gi|167915957|ref|ZP_02503048.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 112]
gi|167923801|ref|ZP_02510892.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei BCC215]
gi|237509278|ref|ZP_04521993.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei MSHR346]
gi|254184827|ref|ZP_04891416.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1655]
gi|184215419|gb|EDU12400.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1655]
gi|235001483|gb|EEP50907.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei MSHR346]
Length = 624
Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 34/136 (25%), Gaps = 24/136 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIP---FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
S+ + W + TG P ++ GD N + L+
Sbjct: 466 SRAAAKIADWL-ARNPTGAPSEGVLLIGDLNSYTYEDPVRTLESRGYVN---LVSSKTGA 521
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLD 102
+ V LD+ + + ++ D+
Sbjct: 522 GAYSYVYNGEAGYLDHALATNALAWRVKAVHDWHINADEPIALQYTLAYKSAEQQRTYYA 581
Query: 103 TRRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 582 PDAYRSSDHDPVLIDI 597
>gi|212213194|ref|YP_002304130.1| exodeoxyribonuclease III [Coxiella burnetii CbuG_Q212]
gi|212011604|gb|ACJ18985.1| exodeoxyribonuclease III [Coxiella burnetii CbuG_Q212]
Length = 259
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 23/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------DDFWQKMDPDGL 51
K + + F+I GD+N I D+ + K+
Sbjct: 131 KRLKNIVHSKRSFIICGDWNIVHKDIDIKNFKSNQKHSGCLPEERAWLDEVFTKVGLVDA 190
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
Q+ + R ++ +I + +S+ + + S H
Sbjct: 191 FRVVNQKPDQYTWWSSRGRAWEKNVGW--RIDYQVITSDLKNS--VKSERIYKDKRFSDH 246
Query: 112 CPLTIEYD 119
PL I+Y+
Sbjct: 247 APLIIDYE 254
>gi|86742342|ref|YP_482742.1| endonuclease/exonuclease/phosphatase [Frankia sp. CcI3]
gi|86569204|gb|ABD13013.1| Endonuclease/exonuclease/phosphatase [Frankia sp. CcI3]
Length = 356
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L+ Q +P V+AGDFN + + ++
Sbjct: 254 RTQLDTLRA---QLEHATLPVVMAGDFNATRDHRPFRRLVNSGVRDAHDVV--------G 302
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + L +F++ ++ S H P+ +
Sbjct: 303 GGWQPTWNSKSLILPPVLRIDHVLASPAFAVTGFEV-----GGDFGSDHRPVIADLAM 355
>gi|240141150|ref|YP_002965630.1| putative endonuclease/exonuclease/phosphatase [Methylobacterium
extorquens AM1]
gi|240011127|gb|ACS42353.1| putative endonuclease/exonuclease/phosphatase [Methylobacterium
extorquens AM1]
Length = 275
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 32/121 (26%), Gaps = 13/121 (10%)
Query: 5 QGEWLK--KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L W P V+ GDFN S + +
Sbjct: 166 QAKALLGPDWLGD-PACHAPTVLLGDFNAMGWSRAYRRL---------SGRLTDARRLTG 215
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+R ++ + + ++ D R K S H P+ E E
Sbjct: 216 ERRWRRGGATFPSRFPLLRVDHVFVSERVAVERIAVVDTPLAR-KASDHLPVLAEIRIEP 274
Query: 123 G 123
G
Sbjct: 275 G 275
>gi|190572480|ref|YP_001970325.1| putative endonuclease/exonuclease/phosphatase family protein
[Stenotrophomonas maltophilia K279a]
gi|190010402|emb|CAQ44010.1| putative endonuclease/exonuclease/phosphatase family protein
[Stenotrophomonas maltophilia K279a]
Length = 266
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 40/144 (27%), Gaps = 33/144 (22%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
EWL+ ++ ++G +V+ GD+N +++ + + +
Sbjct: 127 MEWLRPILEEWARSGRDYVLCGDWNIVRSALDIKNWKSNQKNSGCLPEERDWLNALCADH 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
E R + + D + + S
Sbjct: 187 GQATDVTAGRGWADAYRLLNPTGEDYTWWSNRGAARANNVGWRIDYQFITPGLRDRLRSC 246
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
R + S H P T++YD
Sbjct: 247 SI----YRDERFSDHAPFTVDYDL 266
>gi|168184533|ref|ZP_02619197.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum Bf]
gi|182672340|gb|EDT84301.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum Bf]
Length = 352
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 41/130 (31%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNR-KINSIGD--------TDDFWQKMDPDGL 51
+ QQ +LK + ++ K G ++ GD+N + D + +
Sbjct: 226 IRKQQLSFLKNYIIKEYKKGNYIIVGGDWNHLIPGTDPLMFKTTEKWPDWLQKIPNDFKP 285
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++ FL+ ++ + S ++ + + H
Sbjct: 286 EGFKWVADKNVPTTRTDATPYKKGENFTAVIDGFLVSDNIEVTSVKAHSMEFKNT---DH 342
Query: 112 CPLTIEYDFE 121
P+ +E+ +
Sbjct: 343 NPVNMEFKLK 352
>gi|182701737|ref|ZP_02615102.2| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum NCTC 2916]
gi|182668752|gb|EDT80730.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum NCTC 2916]
Length = 360
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 41/130 (31%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNR-KINSIGD--------TDDFWQKMDPDGL 51
+ QQ +LK + ++ K G ++ GD+N + D + +
Sbjct: 234 IRKQQLSFLKNYIIKEYKKGNYIIVGGDWNHLIPGTDPLMFKTTEKWPDWLQKIPNDFKP 293
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++ FL+ ++ + S ++ + + H
Sbjct: 294 EGFKWVADKNVPTTRTDATPYKKGENFTAVIDGFLVSDNIEVTSVKAHSMEFKNT---DH 350
Query: 112 CPLTIEYDFE 121
P+ +E+ +
Sbjct: 351 NPVNMEFKLK 360
>gi|108803660|ref|YP_643597.1| endonuclease/exonuclease/phosphatase [Rubrobacter xylanophilus DSM
9941]
gi|108764903|gb|ABG03785.1| Endonuclease/exonuclease/phosphatase [Rubrobacter xylanophilus DSM
9941]
Length = 265
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 9/103 (8%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P ++ GDFN S P E N R +
Sbjct: 164 PVLLTGDFNCNPGSRTYEVFASAGFADAHRRAGNPPE-----NTFHRFMGEGYRSGKEGR 218
Query: 82 NKNFLIDNS----FSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
L+ + + ++S S H P+ +
Sbjct: 219 IDWILVRDGGRARWEVLSCRVVRDCEPPLYPSDHYPVVADLAL 261
>gi|282859573|ref|ZP_06268677.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
bivia JCVIHMP010]
gi|282587624|gb|EFB92825.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
bivia JCVIHMP010]
Length = 296
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/143 (11%), Positives = 33/143 (23%), Gaps = 29/143 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + K + P ++ GDFN K+ D + + E+
Sbjct: 155 REAAKLVIKRIKEIAGDKAPVILTGDFNVDQKDEIYKIFAESKILKDTYIAAKQRFAENG 214
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD---------------------- 100
+ + + + N F + Y
Sbjct: 215 TY-----QGFKSDLYTESRIDHIFVSNEFEVNHYGILTNGYWSKNASTNTTKEANAPQQI 269
Query: 101 --LDTRRSKLSTHCPLTIEYDFE 121
S H P+ + F
Sbjct: 270 SFEHYTHRLPSDHYPVLAKIHFN 292
>gi|161831527|ref|YP_001596246.1| exodeoxyribonuclease III [Coxiella burnetii RSA 331]
gi|161763394|gb|ABX79036.1| exodeoxyribonuclease III [Coxiella burnetii RSA 331]
Length = 259
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 23/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------DDFWQKMDPDGL 51
K + + F+I GD+N I D+ + K+
Sbjct: 131 KRLKNIVHSKRSFIICGDWNIVHKEIDIKNFKSNQKHSGCLPEERAWLDEVFTKVGLVDA 190
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
Q+ + R ++ +I + +S+ + + S H
Sbjct: 191 FRVVNQKPDQYTWWSSRGRAWEKNVGW--RIDYQVITSDLKNS--VKSERIYKDKRFSDH 246
Query: 112 CPLTIEYD 119
PL I+Y+
Sbjct: 247 APLIIDYE 254
>gi|114562882|ref|YP_750395.1| endonuclease/exonuclease/phosphatase [Shewanella frigidimarina
NCIMB 400]
gi|114334175|gb|ABI71557.1| Endonuclease/exonuclease/phosphatase [Shewanella frigidimarina
NCIMB 400]
Length = 955
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 37/138 (26%), Gaps = 21/138 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + +W + ++ GD N T L S
Sbjct: 656 RATDAIGQWLMAQYPEQK-ILVIGDLNAYAKENPLTQLANHGYSE---LNAHFGNVNSYS 711
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQSD---------LDTRRS 106
+ LD+ + ++ + + I+ Y++
Sbjct: 712 YMFSGESGQLDHALANQALLDNVLAITEWHINADEPRILDYNEEYKSAAQILDLYHADGF 771
Query: 107 KLSTHCPLTIEYDFEKGN 124
+ S H P+ + FE N
Sbjct: 772 RSSDHDPVIVSLQFEIQN 789
>gi|170758666|ref|YP_001787187.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum A3 str. Loch Maree]
gi|169405655|gb|ACA54066.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum A3 str. Loch Maree]
Length = 352
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNR-KINSIGD--------TDDFWQKMDPDGL 51
+ QQ +LK + ++ K G ++ GD+N + D + +
Sbjct: 226 IRKQQLSFLKNYIIKEYKKGNYIIVGGDWNHLIPGTDPLMFKTTEKWPDWLQKIPNDFKP 285
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ + FL+ ++ S ++ + + H
Sbjct: 286 EGFKWVADKDVPTTRTDARPYKKGENFTAVIDGFLVSDNIEATSVKAYSMEFKNT---DH 342
Query: 112 CPLTIEYDFE 121
P+ +E+ +
Sbjct: 343 NPVKMEFKLK 352
>gi|304390853|ref|ZP_07372805.1| exodeoxyribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|304325736|gb|EFL92982.1| exodeoxyribonuclease III [Mobiluncus curtisii subsp. curtisii ATCC
35241]
Length = 294
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/146 (12%), Positives = 37/146 (25%), Gaps = 30/146 (20%)
Query: 6 GEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDF--------------------- 42
+ L A + + P +I GDFN + +
Sbjct: 148 VQQLSARAIAGVGSDTPQEALICGDFNIVRTARDIKNWKPNHNKTSGVMDEEIAFLDAWM 207
Query: 43 ------WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS 95
+ + + + + R K+ + D + S
Sbjct: 208 ADTLSGSKGLPCVDVGRALVGDTDGPYTWWSWRGKAYDNNAGWRLDYHMATPGLAGQAQS 267
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ + H P+T+ YDF
Sbjct: 268 AAVYRAPAYDARFTDHAPVTVTYDFP 293
>gi|188578884|ref|YP_001915813.1| exodeoxyribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188523336|gb|ACD61281.1| exodeoxyribonuclease III [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 266
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/142 (11%), Positives = 37/142 (26%), Gaps = 33/142 (23%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+WL+ D+ + +G +V+ GD+N ++ + + +
Sbjct: 127 MQWLRPILDEWLASGRQYVLCGDWNIVRTALDIKNWKSNQKNSGCLPPERDWLNGLCADV 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + R + + L+
Sbjct: 187 PDDANAAEGRGWVDSYRVLHPQGQDYTWWSNRGAARTNNVGW--RIDYQLVTPGLRDTLR 244
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
S R + S H P ++Y
Sbjct: 245 ACSIY--REERFSDHAPYIVDY 264
>gi|149728780|ref|XP_001491101.1| PREDICTED: similar to Deoxyribonuclease gamma precursor (DNase
gamma) (Deoxyribonuclease I-like 3) (DNase I homolog
protein DHP2) (Liver and spleen DNase) (LS-DNase) (LSD)
[Equus caballus]
Length = 380
Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 6/124 (4%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D ++ F+ GDFN + + ++ D + ++E
Sbjct: 163 KEIDELADVYVDVKRRWKAENFIFMGDFNAGCSYVPKKAWKNIRLRTDLGFVWLIGDEED 222
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYD 119
T + + R+ + ++ S S+ ++ +S T L S H P+ E+
Sbjct: 223 TTVKSSTKCAYDRIVLRGREIVSSVVPKSNSVFNFQKSYALTEEEALGVSDHFPV--EFK 280
Query: 120 FEKG 123
+
Sbjct: 281 LQSS 284
>gi|189465293|ref|ZP_03014078.1| hypothetical protein BACINT_01641 [Bacteroides intestinalis DSM
17393]
gi|189437567|gb|EDV06552.1| hypothetical protein BACINT_01641 [Bacteroides intestinalis DSM
17393]
Length = 284
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 27/116 (23%), Gaps = 6/116 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L + I + +P VI GDFN ++S + M
Sbjct: 172 RESAVLLLAKIRE-IASDLPVVITGDFNGTVDSDPISVLTEGGMQNTYSASDIVYGP--- 227
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ ++ + LS H P+
Sbjct: 228 TWSFHDFG--RIPVEERQLIDFIFVNGQVVANKFRVIADKPDNGYLSDHAPIQANL 281
>gi|94984569|ref|YP_603933.1| exodeoxyribonuclease III (xth) [Deinococcus geothermalis DSM 11300]
gi|94554850|gb|ABF44764.1| exodeoxyribonuclease III (xth) [Deinococcus geothermalis DSM 11300]
Length = 267
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 26/134 (19%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
W + G+P VI GD+N + + + + +
Sbjct: 139 HAWTQAALAEGLPLVIGGDYNIAHSELDLKNWRSNRKNSGFLPHERAWMSAHLACGLTDT 198
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E+ +R K+ + D + R ++LS H
Sbjct: 199 HRAHLGERSEYTWWSQRGKAYANDVGWRIDYLLAAGVP-------VRDLWVDRAARLSDH 251
Query: 112 CPLTIEYDF-EKGN 124
PLT D KGN
Sbjct: 252 APLTGTVDLGGKGN 265
>gi|163853725|ref|YP_001641768.1| endonuclease/exonuclease/phosphatase [Methylobacterium extorquens
PA1]
gi|163665330|gb|ABY32697.1| Endonuclease/exonuclease/phosphatase [Methylobacterium extorquens
PA1]
Length = 328
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 32/121 (26%), Gaps = 13/121 (10%)
Query: 5 QGEWLK--KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L W P V+ GDFN S + +
Sbjct: 219 QAKALLGPDWLGD-PACHAPTVLLGDFNAMGWSRAYRRL---------SGRLTDARRLTG 268
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+R ++ + + ++ D R K S H P+ E E
Sbjct: 269 DRRWRRGGATFPSRFPLLRVDHVFVSERVAVERIAVVDTPLAR-KASDHLPVLAEIRIEP 327
Query: 123 G 123
G
Sbjct: 328 G 328
>gi|226305494|ref|YP_002765454.1| exodeoxyribonuclease [Rhodococcus erythropolis PR4]
gi|226184611|dbj|BAH32715.1| putative exodeoxyribonuclease [Rhodococcus erythropolis PR4]
Length = 278
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 28/121 (23%), Gaps = 21/121 (17%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------------------GLLIRFPQE- 58
V++GD+N + + K +
Sbjct: 158 DRHVVVSGDWNIAHTELDLKNWKTNKKSSGFLSEERAWMDLLFAEDSAWVDVFRTLHPGV 217
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R K+ + D + + ++ + S H P+T+ Y
Sbjct: 218 DGPYSWWSYRGKAFDNDSGWRIDYQVATRGYAERAKVALVERAESYDLRWSDHAPVTVSY 277
Query: 119 D 119
Sbjct: 278 R 278
>gi|188584031|ref|YP_001927476.1| endonuclease/exonuclease/phosphatase [Methylobacterium populi
BJ001]
gi|179347529|gb|ACB82941.1| Endonuclease/exonuclease/phosphatase [Methylobacterium populi
BJ001]
Length = 283
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 29/121 (23%), Gaps = 13/121 (10%)
Query: 5 QGEWLK--KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q E L W P V+ GDFN S + D L + +
Sbjct: 170 QAEALLGPDWLGD-PACREPVVLLGDFNATGWSRAYRRLGRRLTDARRLTGERRWRRGTA 228
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + + + D R S H P+ E
Sbjct: 229 SFPSR---------LPLLRIDHVFVSEGVRVDRIAVVDTPLARL-ASDHLPVLAEIRIGP 278
Query: 123 G 123
Sbjct: 279 A 279
>gi|16125115|ref|NP_419679.1| hypothetical protein CC_0862 [Caulobacter crescentus CB15]
gi|221233842|ref|YP_002516278.1| hypothetical protein CCNA_00905 [Caulobacter crescentus NA1000]
gi|13422121|gb|AAK22847.1| conserved hypothetical protein [Caulobacter crescentus CB15]
gi|220963014|gb|ACL94370.1| hypothetical protein CCNA_00905 [Caulobacter crescentus NA1000]
Length = 305
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 28/117 (23%), Gaps = 10/117 (8%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L W ++ + GDFN P+G S +
Sbjct: 190 QILALAPWPKARL------ITLGDFNSAPEEAPYRLLTA----PEGPYRDARAAASSVFS 239
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ I +D ++ + +S H P+ E
Sbjct: 240 PSTGTFNRFTPASIGPPIDYIFVDRRLNVARFAVPTDVADAGVISDHFPVLAEITLS 296
>gi|282877908|ref|ZP_06286717.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
buccalis ATCC 35310]
gi|281299909|gb|EFA92269.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
buccalis ATCC 35310]
Length = 228
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 23/120 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E++ + K P +I GDFN D ++
Sbjct: 132 KEQAEFI---VQELQKCNYPVLIGGDFNAGPTEPAIEKVM------DKWGRNMTIMDQTY 182
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + ++ T RS LS H P+ E ++
Sbjct: 183 SSTTPK-----------IKIDYIYAYP---KNRWEVKTSQTVRSYLSDHFPIVSEIILKR 228
>gi|282901382|ref|ZP_06309307.1| Endonuclease/exonuclease/phosphatase [Cylindrospermopsis raciborskii
CS-505]
gi|281193661|gb|EFA68633.1| Endonuclease/exonuclease/phosphatase [Cylindrospermopsis raciborskii
CS-505]
Length = 2198
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 35/134 (26%), Gaps = 20/134 (14%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L W + +++ GDFN L + +
Sbjct: 1855 KAIQALVDWLNTNPTKVNDSDYLLLGDFNAYAQEDPVKVLKNAGYID---LASAFHQGTT 1911
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------------S 106
V +LDY + + ++ D++D
Sbjct: 1912 ASYVFDGQTGTLDYAFASASLAQQVTGATEWAINSDEADGIDYNLDFGRDAAIFDGTTPY 1971
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+ + +
Sbjct: 1972 RSSDHDPVIVGLNL 1985
>gi|323490963|ref|ZP_08096158.1| endonuclease yhcR [Planococcus donghaensis MPA1U2]
gi|323395443|gb|EGA88294.1| endonuclease yhcR [Planococcus donghaensis MPA1U2]
Length = 1164
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 38/124 (30%), Gaps = 9/124 (7%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + + + + ++AGD N + + + ++
Sbjct: 874 ELATAINGFIAEGLEQNPDLNVIVAGDMNDFEFTPALQALKGDILTNKVEDV---PLEDR 930
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N LD+ ++ + + I + + S H PL + FE
Sbjct: 931 YSYYYQGNSQVLDHLLVTNNLAQRTELDMVHI----NAMFMEEHGRASDHDPLLAQISFE 986
Query: 122 KGNV 125
K V
Sbjct: 987 KPAV 990
>gi|167907619|ref|ZP_02494824.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei NCTC 13177]
Length = 624
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 32/136 (23%), Gaps = 24/136 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIP---FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
S+ + W + TG P ++ GD N +
Sbjct: 466 SRAAAKIADWL-ARNPTGAPSEGVLLIGDLNSYTYEDPVRTLESRGYVNLVSSKV---GS 521
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLD 102
+ V LD+ + + ++ D+
Sbjct: 522 GAYSYVYNGEAGYLDHALATNALAWRVKAVHDWHINADEPIALQYTLAYKSAEQQRTYYA 581
Query: 103 TRRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 582 PDAYRSSDHDPVLIDI 597
>gi|167850682|ref|ZP_02476190.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei B7210]
Length = 624
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 32/136 (23%), Gaps = 24/136 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIP---FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
S+ + W + TG P ++ GD N +
Sbjct: 466 SRAAAKIADWL-ARNPTGAPSEGVLLIGDLNSYTYEDPVRTLESRGYVNLVSSKV---GS 521
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLD 102
+ V LD+ + + ++ D+
Sbjct: 522 GAYSYVYNGEAGYLDHALATNALAWRVKAVHDWHINADEPIALQYTLAYKSAEQQRTYYA 581
Query: 103 TRRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 582 PDAYRSSDHDPVLIDI 597
>gi|134278080|ref|ZP_01764794.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 305]
gi|134249864|gb|EBA49944.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 305]
Length = 624
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 32/136 (23%), Gaps = 24/136 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIP---FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
S+ + W + TG P ++ GD N +
Sbjct: 466 SRAAAKIADWL-ARNPTGAPSEGVLLIGDLNSYTYEDPVRTLESRGYVNLVSSKV---GS 521
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLD 102
+ V LD+ + + ++ D+
Sbjct: 522 GAYSYVYNGEAGYLDHALATNALAWRVKAVHDWHINADEPIALQYTLAYKSAEQQRTYYA 581
Query: 103 TRRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 582 PDAYRSSDHDPVLIDI 597
>gi|254301107|ref|ZP_04968551.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 406e]
gi|157811458|gb|EDO88628.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 406e]
Length = 624
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 32/136 (23%), Gaps = 24/136 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIP---FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
S+ + W + TG P ++ GD N +
Sbjct: 466 SRAAAKIADWL-ARNPTGAPSEGVLLIGDLNSYTYEDPVRTLESRGYVNLVSSKV---GS 521
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLD 102
+ V LD+ + + ++ D+
Sbjct: 522 GAYSYVYNGEAGYLDHALATNALAWRVKAVHDWHINADEPIALQYTLAYKSAEQQRTYYA 581
Query: 103 TRRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 582 PDAYRSSDHDPVLIDI 597
>gi|126442413|ref|YP_001063630.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 668]
gi|167724713|ref|ZP_02407949.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei DM98]
gi|217422484|ref|ZP_03453987.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 576]
gi|254193781|ref|ZP_04900213.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei S13]
gi|126221904|gb|ABN85409.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 668]
gi|169650532|gb|EDS83225.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei S13]
gi|217394715|gb|EEC34734.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 576]
Length = 624
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 32/136 (23%), Gaps = 24/136 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIP---FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
S+ + W + TG P ++ GD N +
Sbjct: 466 SRAAAKIADWL-ARNPTGAPSEGVLLIGDLNSYTYEDPVRTLESRGYVNLVSSKV---GS 521
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLD 102
+ V LD+ + + ++ D+
Sbjct: 522 GAYSYVYNGEAGYLDHALATNALAWRVKAVHDWHINADEPIALQYTLAYKSAEQQRTYYA 581
Query: 103 TRRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 582 PDAYRSSDHDPVLIDI 597
>gi|126455741|ref|YP_001076529.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1106a]
gi|242311247|ref|ZP_04810264.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1106b]
gi|254186048|ref|ZP_04892566.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei Pasteur 52237]
gi|254264734|ref|ZP_04955599.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1710a]
gi|126229509|gb|ABN92922.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1106a]
gi|157933734|gb|EDO89404.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei Pasteur 52237]
gi|242134486|gb|EES20889.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1106b]
gi|254215736|gb|EET05121.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1710a]
Length = 624
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 32/136 (23%), Gaps = 24/136 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIP---FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
S+ + W + TG P ++ GD N +
Sbjct: 466 SRAAAKIADWL-ARNPTGAPSEGVLLIGDLNSYTYEDPVRTLESRGYVNLVSSKV---GS 521
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLD 102
+ V LD+ + + ++ D+
Sbjct: 522 GAYSYVYNGEAGYLDHALATNALAWRVKAVHDWHINADEPIALQYTLAYKSAEQQRTYYA 581
Query: 103 TRRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 582 PDAYRSSDHDPVLIDI 597
>gi|53716715|ref|YP_105078.1| putative extracellular nuclease [Burkholderia mallei ATCC 23344]
gi|53722864|ref|YP_111849.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei K96243]
gi|67643158|ref|ZP_00441906.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei GB8 horse 4]
gi|121597344|ref|YP_991036.1| putative extracellular nuclease [Burkholderia mallei SAVP1]
gi|124382710|ref|YP_001025437.1| putative extracellular nuclease [Burkholderia mallei NCTC 10229]
gi|126447726|ref|YP_001077497.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei NCTC 10247]
gi|167820854|ref|ZP_02452534.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 91]
gi|254177252|ref|ZP_04883908.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei ATCC 10399]
gi|254203011|ref|ZP_04909373.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei FMH]
gi|254208344|ref|ZP_04914693.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei JHU]
gi|52213278|emb|CAH39321.1| putative endonuclease/exonuclease/phosphatase family protein
[Burkholderia pseudomallei K96243]
gi|52422685|gb|AAU46255.1| putative extracellular nuclease [Burkholderia mallei ATCC 23344]
gi|121225142|gb|ABM48673.1| putative extracellular nuclease [Burkholderia mallei SAVP1]
gi|126240580|gb|ABO03692.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei NCTC 10247]
gi|147746056|gb|EDK53134.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei FMH]
gi|147751031|gb|EDK58099.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei JHU]
gi|160698292|gb|EDP88262.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei ATCC 10399]
gi|238524427|gb|EEP87860.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei GB8 horse 4]
gi|261826943|gb|ABN00602.2| putative extracellular nuclease [Burkholderia mallei NCTC 10229]
Length = 624
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 32/136 (23%), Gaps = 24/136 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIP---FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
S+ + W + TG P ++ GD N +
Sbjct: 466 SRAAAKIADWL-ARNPTGAPSEGVLLIGDLNSYTYEDPVRTLESRGYVNLVSSKV---GS 521
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLD 102
+ V LD+ + + ++ D+
Sbjct: 522 GAYSYVYNGEAGYLDHALATNALAWRVKAVHDWHINADEPIALQYTLAYKSAEQQRTYYA 581
Query: 103 TRRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 582 PDAYRSSDHDPVLIDI 597
>gi|172062389|ref|YP_001810040.1| endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
MC40-6]
gi|171994906|gb|ACB65824.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
MC40-6]
Length = 604
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 32/137 (23%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ L W G ++ GDFN + L+ +
Sbjct: 467 RAAAKLADWLAGTPTGVAGQGTLLIGDFNSYTYEDPIRLLEARGY---RNLVSRWIGANA 523
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTR 104
V LD+ + + + ++ D+
Sbjct: 524 YSYVYNGEAGYLDHALASLPLASHVKAVHEWHINADEPLALQYTLAYKSAEQQKTYYAPD 583
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ I+
Sbjct: 584 AYRSSDHDPVLIDIALP 600
>gi|115359939|ref|YP_777077.1| endonuclease/exonuclease/phosphatase [Burkholderia ambifaria AMMD]
gi|115285227|gb|ABI90743.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria AMMD]
Length = 604
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 32/137 (23%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ L W G ++ GDFN + L+ +
Sbjct: 467 RAAAKLADWLAGTPTGVAGQGTLLIGDFNSYTYEDPIRLLEARGY---RNLVSRWIGANA 523
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTR 104
V LD+ + + + ++ D+
Sbjct: 524 YSYVYNGEAGYLDHALASLPLASHVKAVHEWHINADEPLALQYTLAYKSTEQQKTYYAPD 583
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ I+
Sbjct: 584 AYRSSDHDPVLIDIALP 600
>gi|315023440|gb|EFT36448.1| AP endonuclease domain protein [Riemerella anatipestifer RA-YM]
Length = 325
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 34/118 (28%), Gaps = 20/118 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q E ++ K+ P ++ GDFN NS + F + +
Sbjct: 228 QTQVEQIR---LAVEKSPYPVILGGDFNAVPNSYEYY------YLSQNMTDSFLEVGKGL 278
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
K VS D R +LS HCP+ E+ +
Sbjct: 279 GTTFHDYK-------FPIRIDYLFSTKEIKPVSLDTD----RSRQLSDHCPIIGEFKY 325
>gi|313206564|ref|YP_004045741.1| endonuclease/exonuclease/phosphatase [Riemerella anatipestifer DSM
15868]
gi|312445880|gb|ADQ82235.1| Endonuclease/exonuclease/phosphatase [Riemerella anatipestifer DSM
15868]
gi|325335988|gb|ADZ12262.1| Endonuclease/exonuclease/phosphatase [Riemerella anatipestifer
RA-GD]
Length = 326
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 34/118 (28%), Gaps = 20/118 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q E ++ K+ P ++ GDFN NS + F + +
Sbjct: 229 QTQVEQIR---LAVEKSPYPVILGGDFNAVPNSYEYY------YLSQNMTDSFLEVGKGL 279
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
K VS D R +LS HCP+ E+ +
Sbjct: 280 GTTFHDYK-------FPIRIDYLFSTKEIKPVSLDTD----RSRQLSDHCPIIGEFKY 326
>gi|153208660|ref|ZP_01946912.1| exodeoxyribonuclease III [Coxiella burnetii 'MSU Goat Q177']
gi|165919791|ref|ZP_02219534.1| exodeoxyribonuclease III [Coxiella burnetii RSA 334]
gi|212218132|ref|YP_002304919.1| exodeoxyribonuclease III [Coxiella burnetii CbuK_Q154]
gi|120575846|gb|EAX32470.1| exodeoxyribonuclease III [Coxiella burnetii 'MSU Goat Q177']
gi|165916874|gb|EDR35478.1| exodeoxyribonuclease III [Coxiella burnetii RSA 334]
gi|212012394|gb|ACJ19774.1| exodeoxyribonuclease III [Coxiella burnetii CbuK_Q154]
Length = 259
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 23/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------DDFWQKMDPDGL 51
K + + F+I GD+N I D+ + K+
Sbjct: 131 KRLKNIVHSKRSFIICGDWNIVHKEIDIKNFKSNQKHSGCLPEERAWLDEVFTKVGLVDA 190
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
Q+ + R ++ +I + +S+ + + S H
Sbjct: 191 FRVVNQKPDQYTWWSSRGRAWEKNVGW--RIDYQVITSDLKNS--VKSERIYKDKRFSDH 246
Query: 112 CPLTIEYD 119
PL I+Y+
Sbjct: 247 APLIIDYE 254
>gi|29346594|ref|NP_810097.1| hypothetical protein BT_1184 [Bacteroides thetaiotaomicron
VPI-5482]
gi|253568042|ref|ZP_04845453.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|29338490|gb|AAO76291.1| putative transmembrane endonuclease/exonuclease [Bacteroides
thetaiotaomicron VPI-5482]
gi|251842115|gb|EES70195.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 370
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 20/119 (16%)
Query: 3 SQQGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +Q I P ++ GDFN +S +KM+ F
Sbjct: 271 KRAAQA--EHINQLISDSPYPTLVCGDFNSLPSSYVYQTVKGEKMNDG-----FQTCGHG 323
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ K L + F V Y DL+ S H P+ +
Sbjct: 324 YMYTFRYFK-------HLLRIDYILHSSEFQGVDYFSPDLEY-----SDHNPVVMRMRL 370
>gi|284992406|ref|YP_003410960.1| endonuclease/exonuclease/phosphatase [Geodermatophilus obscurus DSM
43160]
gi|284065651|gb|ADB76589.1| Endonuclease/exonuclease/phosphatase [Geodermatophilus obscurus DSM
43160]
Length = 278
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 31/127 (24%), Gaps = 14/127 (11%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------DFWQKMDPDGLLIRFPQ 57
Q E + ++ + T P V+ GD N + +S
Sbjct: 149 QVEEVVRFVAARAGTAHPPVVTGDLNAEPDSDEIRRLCGHKTAPVVPGTVLVDAWRYAGP 208
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS------YDQSDLDTRRSKLSTH 111
++ +RN F L+ + D S H
Sbjct: 209 DEAGWT-WDRRNPHVAATFEPSARIDYVLVGPPTAGGRGHVRGVRLVGDRPVDGVWPSDH 267
Query: 112 CPLTIEY 118
C + E
Sbjct: 268 CGVLAEL 274
>gi|226949104|ref|YP_002804195.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum A2 str. Kyoto]
gi|226842810|gb|ACO85476.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum A2 str. Kyoto]
Length = 360
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNR-KINSIGD--------TDDFWQKMDPDGL 51
+ QQ +LK + ++ K G ++ GD+N + D + +
Sbjct: 234 IRKQQLSFLKNYIIKEYKKGNYIIVGGDWNHLIPGTDPLMFKTTEKWPDWLQKIPNDFKP 293
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++ FL+ ++ S ++ + + H
Sbjct: 294 EGFKWVADKNVPTTRTDATPYKKGENFTAVIDGFLVSDNIEATSVKAYSMEFKNT---DH 350
Query: 112 CPLTIEYDFE 121
P+ +E+ +
Sbjct: 351 NPVKMEFKLK 360
>gi|189499147|ref|YP_001958617.1| exodeoxyribonuclease III Xth [Chlorobium phaeobacteroides BS1]
gi|189494588|gb|ACE03136.1| exodeoxyribonuclease III Xth [Chlorobium phaeobacteroides BS1]
Length = 256
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 32/130 (24%), Gaps = 23/130 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------DDFWQKMDPD 49
L + + ++ G + GD N + D + D
Sbjct: 127 LGTYILELLREGRQVIHTGDINVAHTDLDVHHSQNKPGIVGLRPEERAAIDRHLEIGLHD 186
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ RFP +K+ + D +V K S
Sbjct: 187 IMRERFPDKKDMFTWWPYWKGARERNLGWRIDCFYLSKGLIGDVVDVRIDS----AEKSS 242
Query: 110 THCPLTIEYD 119
H P+ ++
Sbjct: 243 DHAPVILDIR 252
>gi|149198151|ref|ZP_01875198.1| hypothetical protein LNTAR_15857 [Lentisphaera araneosa HTCC2155]
gi|149138753|gb|EDM27159.1| hypothetical protein LNTAR_15857 [Lentisphaera araneosa HTCC2155]
Length = 336
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 41/120 (34%), Gaps = 3/120 (2%)
Query: 1 MLSQQGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
M + L D+ + + ++AGD N +S + +++ + L
Sbjct: 176 MRRYEARQLHYLVDEILKKEPEANIIVAGDMNDTFDSSPIKEIQYRRYKAEKRLYDLRPY 235
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+S + S +Y ID ++ + + + + S H P+ + +
Sbjct: 236 DKSHASWTHYYDKSDEYSRIDYFFSSYAMLSEINYDTLVIPHSPH-WFIASDHRPMLLSF 294
>gi|148379821|ref|YP_001254362.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum A str. ATCC 3502]
gi|153932125|ref|YP_001384119.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum A str. ATCC 19397]
gi|153935873|ref|YP_001387659.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum A str. Hall]
gi|148289305|emb|CAL83401.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum A str. ATCC 3502]
gi|152928169|gb|ABS33669.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum A str. ATCC 19397]
gi|152931787|gb|ABS37286.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum A str. Hall]
Length = 352
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNR-KINSIGD--------TDDFWQKMDPDGL 51
+ QQ +LK + ++ K G ++ GD+N + D + +
Sbjct: 226 IRKQQLSFLKNYIIKEYKKGNYIIVGGDWNHLIPGTDPLMFKTTEKWPDWLQKIPNDFKP 285
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++ FL+ ++ S ++ + + H
Sbjct: 286 EGFKWVADKNVPTTRTDATPYKKGENFTAVIDGFLVSDNIEATSVKAYSMEFKNT---DH 342
Query: 112 CPLTIEYDFE 121
P+ +E+ +
Sbjct: 343 NPVKMEFKLK 352
>gi|218530329|ref|YP_002421145.1| 5'-nucleotidase domain protein [Methylobacterium chloromethanicum
CM4]
gi|218522632|gb|ACK83217.1| 5'-Nucleotidase domain protein [Methylobacterium chloromethanicum
CM4]
Length = 2796
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/135 (10%), Positives = 34/135 (25%), Gaps = 21/135 (15%)
Query: 6 GEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L +W + ++ GDFN +
Sbjct: 1499 ATALAQWVSMRPTGTQDSDTLLLGDFNAYLKEDALDILRAAGFTNLAEDRLANP----YS 1554
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------------SKL 108
V +LD+ + + + ++ D++D ++
Sbjct: 1555 YVFDGAYGALDHALASASLNRQVTGVTEWHINADEADAIDYNLDFGRSPRSFDGRSPARE 1614
Query: 109 STHCPLTIEYDFEKG 123
S H P+ + ++
Sbjct: 1615 SDHDPVLVGLRLDQT 1629
>gi|265763356|ref|ZP_06091924.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263255964|gb|EEZ27310.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 361
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 28/116 (24%), Gaps = 19/116 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L++ T P ++ GDFN +S + + F
Sbjct: 265 QAKTLEQLIRT---TPYPVLVCGDFNSLPSSYTYSTVKGDNLQDG-----FQTCGHGYMY 316
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ K L F S H P+ +E
Sbjct: 317 TFRYFKRLL-------RIDYIFHSKEFK----GVDYYSPDLDLCSDHNPVVMEVKM 361
>gi|240851283|ref|YP_002972686.1| exodeoxyribonuclease III [Bartonella grahamii as4aup]
gi|240268406|gb|ACS51994.1| exodeoxyribonuclease III [Bartonella grahamii as4aup]
Length = 269
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 31/132 (23%), Gaps = 23/132 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKMDPDGLL 52
G+ ++ GD N + D Q D +
Sbjct: 139 IRADQGDGLSSLLVGDLNIAPLAEDVWSHQQLLKVVSHTPIETERLQDLCCQGGWVDLMR 198
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQSDLDTRRSKLST 110
+ P + R + R + + +V + S
Sbjct: 199 LHIPVPTKLYTWWSYRARDWAF-TDYGRRLDHIWSSPDLAPFVVDLSIFRDARGWERPSD 257
Query: 111 HCPLTIEYDFEK 122
H P+ +DF +
Sbjct: 258 HIPVQTVFDFSR 269
>gi|60681531|ref|YP_211675.1| putative transmembrane endonuclease/exonuclease/phosphatase family
protein [Bacteroides fragilis NCTC 9343]
gi|60492965|emb|CAH07743.1| putative transmembrane endonuclease/exonuclease/phosphatase family
protein [Bacteroides fragilis NCTC 9343]
Length = 361
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 19/116 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L++ T P ++ GDFN +S + + F
Sbjct: 265 QAKTLEQLIRT---TPYPILVCGDFNSLPSSYTYSTVKGDNLQDG-----FQTCGHGYMY 316
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ K L F + S H P+ +E
Sbjct: 317 TFRYFKRLL-------RIDYIFHSKEFK----GVDYYSPDLNLCSDHNPVVMEVKM 361
>gi|291302648|ref|YP_003513926.1| endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
gi|290571868|gb|ADD44833.1| Endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
Length = 278
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 17/117 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + + G P ++ GDFN + W+K+ + + Q
Sbjct: 178 RQAQVADMRRIMRCDHGEPQLLLGDFNAPPEAPELR-PLWRKLSD--VWAKSGQPDPGYT 234
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+DY + + T + S H P+ E
Sbjct: 235 YPASAPDRRIDYI--------------AASKRFKVKSAATPTTLASDHLPVVAELTL 277
>gi|254785075|ref|YP_003072503.1| extracellular nuclease [Teredinibacter turnerae T7901]
gi|237685604|gb|ACR12868.1| extracellular nuclease [Teredinibacter turnerae T7901]
Length = 796
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 24/137 (17%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + W D G +I GD N Q + +
Sbjct: 571 QAARAVAAWLDTAPTGVAGQERIILGDLNSYAMEDPIQYLLSQGYHNADPV-------GA 623
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS--------------- 106
V +LDY ++ + L ++ ++ D++D
Sbjct: 624 YSYVFDGQVGTLDYMLVSDALSSTLEESLIWNINADEADALDYNLDFGRSPTYFNAASPL 683
Query: 107 KLSTHCPLTIEYDFEKG 123
+ S H P+ + + E
Sbjct: 684 RSSDHDPVLVGFQLEPS 700
>gi|53713283|ref|YP_099275.1| hypothetical protein BF1993 [Bacteroides fragilis YCH46]
gi|52216148|dbj|BAD48741.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
Length = 361
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 28/116 (24%), Gaps = 19/116 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L++ T P ++ GDFN +S + + F
Sbjct: 265 QAKTLEQLIRT---TPYPILVCGDFNSLPSSYTYSTVKGDNLQDG-----FQTCGHGYMY 316
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ K L F S H P+ +E
Sbjct: 317 TFRYFKRLL-------RIDYIFHSKEFK----GVDYYSPDLDLCSDHNPVVMEVKM 361
>gi|319442911|ref|ZP_07992067.1| putative exodeoxyribonuclease [Corynebacterium variabile DSM 44702]
Length = 327
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 30/111 (27%), Gaps = 9/111 (8%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQ---------KMDPDGLLIRFPQEKESTCNVIKR 68
+ G P GDF ++ + + + +E+ R
Sbjct: 217 RNGNPAGGVGDFFGAVDYTPGRVAQARVAGGAPGDPQWFDVLRQLHADEEEGPYSWWTWR 276
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
K+ D + V+ + S H P+ +EY+
Sbjct: 277 GKAFDTGAGWRIDYQIASRPLFERAVAAWVDKAPDYDLRWSDHSPVLVEYN 327
>gi|103488148|ref|YP_617709.1| exodeoxyribonuclease III (xth) [Sphingopyxis alaskensis RB2256]
gi|98978225|gb|ABF54376.1| exodeoxyribonuclease III (xth) [Sphingopyxis alaskensis RB2256]
Length = 264
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 29/124 (23%), Gaps = 23/124 (18%)
Query: 19 TGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDGLLIRFPQEKES- 61
G P V+ GDFN + + + + +
Sbjct: 142 NGTPTVLTGDFNVAPLASDVWNHKALLDVVSHTPIEVETLARLQAASDWVDLGRHFIAAP 201
Query: 62 ---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLSTHCPLTI 116
R K R + + V++ + S H PL
Sbjct: 202 APLYTWWSYRAKDWE-ASNRGRRLDHMWVTPDLKDKAVAHRIVQPARSWERPSDHVPLIT 260
Query: 117 EYDF 120
E+ F
Sbjct: 261 EFAF 264
>gi|119358281|ref|YP_912925.1| exodeoxyribonuclease III Xth [Chlorobium phaeobacteroides DSM 266]
gi|119355630|gb|ABL66501.1| exodeoxyribonuclease III Xth [Chlorobium phaeobacteroides DSM 266]
Length = 256
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/127 (10%), Positives = 27/127 (21%), Gaps = 23/127 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDGLLI 53
+ + + G V GD N I + + ++
Sbjct: 131 FIENLLLEGRQIVFTGDMNVAHRDIDVHRSQNKPGAVGLRAEERSSIDACLALGLRDVMR 190
Query: 54 RFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E+ + D + + R + S H
Sbjct: 191 ERAPERNDLFTWWPYWKNARERNLGWRIDCFFLSAAIAERVTMVAVD----RDERSSDHA 246
Query: 113 PLTIEYD 119
P+ +E
Sbjct: 247 PIILELS 253
>gi|119486376|ref|ZP_01620435.1| hypothetical protein L8106_17019 [Lyngbya sp. PCC 8106]
gi|119456589|gb|EAW37719.1| hypothetical protein L8106_17019 [Lyngbya sp. PCC 8106]
Length = 282
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 40/127 (31%), Gaps = 13/127 (10%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKIN-SIGDTDDFWQKMDPDGLLIRFPQE--- 58
+QQ E L+ WA + +P + GD+N + + + ++
Sbjct: 161 NQQAENLRDWAAAQ---SLPVIAVGDYNFDFDLDKKKGNKAFDLFVRKDVMTWIKPNCLK 217
Query: 59 ----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ + S LDY + + K + ++ V + S H PL
Sbjct: 218 TNSCPLTGTQCDPKYASILDYVFVSQMAKKWPCESDILFVQNQV--CQKEKEGFSDHYPL 275
Query: 115 TIEYDFE 121
+
Sbjct: 276 MANFSIP 282
>gi|86747929|ref|YP_484425.1| 5'-nucleotidase [Rhodopseudomonas palustris HaA2]
gi|86570957|gb|ABD05514.1| 5'-nucleotidase [Rhodopseudomonas palustris HaA2]
Length = 2667
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 22/130 (16%)
Query: 8 WLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L WA D ++ GDFN ++ G ++ ++ V
Sbjct: 839 ALTAWAQSDPTGSGDSDVLLLGDFNGYAKEQSIG-----LLEDAGYENLQTRQDDAYSYV 893
Query: 66 IKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSD-------LDTRRSKLST 110
+LDY + + + + Y+ T ++S
Sbjct: 894 FDGQTGTLDYAFANDSMGSQVTGVTTWHINADEADALDYNTDYGRDTAIFDGTEPVRVSD 953
Query: 111 HCPLTIEYDF 120
H P+ I D
Sbjct: 954 HDPVIIGLDL 963
>gi|194333003|ref|YP_002014863.1| exodeoxyribonuclease III Xth [Prosthecochloris aestuarii DSM 271]
gi|194310821|gb|ACF45216.1| exodeoxyribonuclease III Xth [Prosthecochloris aestuarii DSM 271]
Length = 258
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 10/129 (7%), Positives = 28/129 (21%), Gaps = 23/129 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------------KMDPDG 50
+ + + G ++ GD N ++ + ++
Sbjct: 130 VATYIGGLLDEGREIILTGDMNVAHTALDVHHSQNKPGAVGLRAEERSALDRQLQLGLHD 189
Query: 51 LLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ +E + D + K S
Sbjct: 190 IMRERHPGREGLYTWWPYWKGARERNLGWRIDCFYLSGGLLSQVQDVVVDIE----EKSS 245
Query: 110 THCPLTIEY 118
H P+ ++
Sbjct: 246 DHAPVILDI 254
>gi|254248843|ref|ZP_04942163.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
PC184]
gi|124875344|gb|EAY65334.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
PC184]
Length = 684
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 31/132 (23%), Gaps = 22/132 (16%)
Query: 11 KWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
W ++ GD N + L+ + V +
Sbjct: 543 DWLATSPTGIAADGVLLIGDLNSYAKEDPLRTLEARGY---ANLVVRFVGDAAYSYVFRG 599
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTRRSKLSTH 111
+LD+ + + F ++ D+ + S H
Sbjct: 600 EAGNLDHALATPALAARVKAVRFWHINADEPVVLQPVPDYKTSAQRSAYYAPDAYRSSDH 659
Query: 112 CPLTIEYDFEKG 123
P+ I+ +
Sbjct: 660 DPVVIDLALDDA 671
>gi|124265282|ref|YP_001019286.1| DNA-(apurinic or apyrimidinic site) lyase [Methylibium
petroleiphilum PM1]
gi|124258057|gb|ABM93051.1| DNA-(apurinic or apyrimidinic site) lyase [Methylibium
petroleiphilum PM1]
Length = 263
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 35/126 (27%), Gaps = 21/126 (16%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLIRF 55
+ +K F++ GD N I + ++ +
Sbjct: 139 ELLKATREFILVGDVNIAHREIDLKNWKSNQKNSGFLPEERAWMSRALDELGLVDVHRTL 198
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N+ + L + + ++ S + + S H PLT
Sbjct: 199 RPDDTGEAYTWWSNRGQAWANNVGWRIDYHLATPALAALARSASVY--KAQRFSDHAPLT 256
Query: 116 IEYDFE 121
++Y+
Sbjct: 257 VDYELS 262
>gi|153939510|ref|YP_001391121.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum F str. Langeland]
gi|152935406|gb|ABS40904.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum F str. Langeland]
gi|295319165|gb|ADF99542.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum F str. 230613]
Length = 352
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNR-KINSIGD--------TDDFWQKMDPDGL 51
+ QQ +LK + ++ K G ++ GD+N + D + +
Sbjct: 226 IRKQQLSFLKNYIIKEYKKGNYIIVGGDWNHLIPGTDPLMFKTTEKWPDWLQKIPNDFKP 285
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++ FL+ ++ S K + H
Sbjct: 286 EGFKWVADKNVPTTRTDATPYKKGENFTAVIDGFLVSDNIEATSVK---AYPMEFKNTDH 342
Query: 112 CPLTIEYDFE 121
P+ +E+ +
Sbjct: 343 NPVKMEFKLK 352
>gi|114328405|ref|YP_745562.1| hypothetical protein GbCGDNIH1_1741 [Granulibacter bethesdensis
CGDNIH1]
gi|114316579|gb|ABI62639.1| hypothetical protein GbCGDNIH1_1741 [Granulibacter bethesdensis
CGDNIH1]
Length = 358
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 30/141 (21%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L Q L W ++ + G+PF+I GDFNR ++ DD QKM+ L +
Sbjct: 218 LQAQTIPLTGWIAERKQEGVPFLILGDFNRWLHP---GDDVLQKMEQVAPLTLLTVNRRD 274
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD--------------------- 100
C S +D+ + ++++ S +++Y +
Sbjct: 275 PC---HHGASFIDHILAGGVARSWIDPESLRVMTYGPATTSKPEGQAMRYQLPWTRMPPG 331
Query: 101 ---LDTRRSKLSTHCPLTIEY 118
LS HCP++I
Sbjct: 332 KLIQPDSSDGLSDHCPVSIRL 352
>gi|148259431|ref|YP_001233558.1| exodeoxyribonuclease III Xth [Acidiphilium cryptum JF-5]
gi|146401112|gb|ABQ29639.1| exodeoxyribonuclease III Xth [Acidiphilium cryptum JF-5]
Length = 267
Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 10/124 (8%), Positives = 23/124 (18%), Gaps = 20/124 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDGLLIRFPQE 58
+ ++ GD N W+ + F +
Sbjct: 144 MNRPHRTMLVGDLNIAPLENDVWSHKQLLNVVSHTPPETEGLNAWRTEGFIDAIRHFVPD 203
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLSTHCPLTI 116
+ R + + + + S H P+ +
Sbjct: 204 DQKLFTWWSYRNRDWRASNRGRRLDHIWVSTDLIGNLARHAILQDARDWERGSDHVPVVL 263
Query: 117 EYDF 120
D
Sbjct: 264 TLDL 267
>gi|313158737|gb|EFR58124.1| endonuclease/exonuclease/phosphatase family protein [Alistipes sp.
HGB5]
Length = 318
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/98 (13%), Positives = 22/98 (22%), Gaps = 3/98 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ G P +I GDFN I + + + K
Sbjct: 215 AQYADGFPQIICGDFNSGIENAPV-ACLRDAGWQEAYEAVHGPGEAGFTY--HGFKGPDY 271
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
R + + V+ + S H
Sbjct: 272 RKKNARRIDFIFVRGNLQPVAAEILRDKVDGLYPSDHY 309
>gi|170755597|ref|YP_001781409.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum B1 str. Okra]
gi|169120809|gb|ACA44645.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum B1 str. Okra]
Length = 352
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 40/130 (30%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNR-KINSIGD--------TDDFWQKMDPDGL 51
+ QQ +LK + ++ K G ++ GD+N + D + +
Sbjct: 226 IRKQQLSFLKNYIIKEYKKGNYIIVGGDWNHLIPGTDPLMFKTTEKWPDWLQKIPNDFKP 285
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++ FL+ ++ S ++ + + H
Sbjct: 286 EGFKWIADKNVPTTRTDATPYKKGENFTAVIDGFLVSDNIEATSVKAYSMEFKNT---DH 342
Query: 112 CPLTIEYDFE 121
P+ +E+ +
Sbjct: 343 NPVKMEFKLK 352
>gi|312130952|ref|YP_003998292.1| endonuclease/exonuclease/phosphatase [Leadbetterella byssophila DSM
17132]
gi|311907498|gb|ADQ17939.1| Endonuclease/exonuclease/phosphatase [Leadbetterella byssophila DSM
17132]
Length = 274
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/106 (13%), Positives = 27/106 (25%), Gaps = 6/106 (5%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
Q+I P ++ GDFN + + P S
Sbjct: 175 QEIAGKFPVILTGDFNSLPETDQIKAI-SGLLKDAYTSSIAPPYGPVGT-----ANSFKL 228
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + ++ Y + S H P+ + F
Sbjct: 229 DAPLKNRIDYIFVSGTMEVLKYASLTDHKDQRYPSDHLPIAAKIRF 274
>gi|302837660|ref|XP_002950389.1| hypothetical protein VOLCADRAFT_104648 [Volvox carteri f.
nagariensis]
gi|300264394|gb|EFJ48590.1| hypothetical protein VOLCADRAFT_104648 [Volvox carteri f.
nagariensis]
Length = 1732
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 32/133 (24%), Gaps = 16/133 (12%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-----DDFWQKMDPD----------GL 51
L+ D+ G V+ GD N D + K + +
Sbjct: 161 RALRTKMDELTALGRQVVLVGDLNIAAERRDVHPTLDFDSMYDKQELAELSGLIAAYPDV 220
Query: 52 LIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ S +R + + D + S + K S
Sbjct: 221 WRHLHPDTEGSYTVWDERTSARAFNTGLRIDYVLVSPGLLPYVQSCEILTAAAIPPKWSD 280
Query: 111 HCPLTIEYDFEKG 123
H + + ++
Sbjct: 281 HAAILLTLRVQRA 293
>gi|297583298|ref|YP_003699078.1| 5'-nucleotidase domain-containing protein [Bacillus selenitireducens
MLS10]
gi|297141755|gb|ADH98512.1| 5'-Nucleotidase domain protein [Bacillus selenitireducens MLS10]
Length = 1992
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 10/118 (8%)
Query: 6 GEWLKKWA----DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
E + + + G V+ GDFN S T+ + + + +
Sbjct: 1477 AEVIGDFVGDLNEAHGDDGANVVVVGDFNDYPWSPPVTEMAERGDLHNAIFELPRNAQ-- 1534
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
SLD ++ L +S +I SD + S H P+ +++
Sbjct: 1535 YTYNYNGYSQSLDSILVTGSLTAELEVDSMNI----NSDFMEVHGRASDHDPMMVQFS 1588
>gi|21232876|ref|NP_638793.1| hypothetical protein XCC3447 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767053|ref|YP_241815.1| hypothetical protein XC_0717 [Xanthomonas campestris pv. campestris
str. 8004]
gi|21114707|gb|AAM42717.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66572385|gb|AAY47795.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 288
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 11/120 (9%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ Q + IP V+ GDFN + I + D +
Sbjct: 180 EHSARLILSRIAQ-LPADIPVVLTGDFNSDPDKITY--PTLTAVLGDARARAPKRSGPEN 236
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
D+ ++++ + + D S H P+ E+ + +
Sbjct: 237 T--------FQDFSTHPTRRIDWILFRGLTPTQFTTLDDRPGGVLPSDHYPVLAEFAWPR 288
>gi|332529941|ref|ZP_08405892.1| exodeoxyribonuclease III Xth [Hylemonella gracilis ATCC 19624]
gi|332040638|gb|EGI77013.1| exodeoxyribonuclease III Xth [Hylemonella gracilis ATCC 19624]
Length = 265
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/147 (10%), Positives = 39/147 (26%), Gaps = 35/147 (23%)
Query: 3 SQQGEWLKKWADQK------IKTGIPFVIAGDFNRKINSIGDTDDFWQ------------ 44
QQ ++ ++ D+ ++ F++ GD N + +
Sbjct: 123 RQQAKF--RFLDEMWAHLQSLRGQREFILCGDVNIAHKEMDLKNWKGNLKNSGFLPEERA 180
Query: 45 -----------KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI 93
+ + + R ++ L + +
Sbjct: 181 WMTKLLDPQQGGLVDVYRTLEPEAIDTAYTWWSNRGQAYAKNVGW--RIDYHLATPALAA 238
Query: 94 VSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++ + K S H PL++ YD
Sbjct: 239 LARQTGVY--KDEKFSDHAPLSVRYDL 263
>gi|253565260|ref|ZP_04842715.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251945539|gb|EES85946.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
Length = 361
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 28/116 (24%), Gaps = 19/116 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L++ T P ++ GDFN +S + + F
Sbjct: 265 QAKTLEQLIRT---TPYPVLVCGDFNSLPSSYTYSTVKGDNLQDG-----FQTCGHGYMY 316
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ K L F S H P+ +E
Sbjct: 317 TFRYFKRLL-------RIDYIFHSKEFK----GVDYYSPDLDLCSDHNPVVMEVKM 361
>gi|301755468|ref|XP_002913572.1| PREDICTED: deoxyribonuclease gamma-like [Ailuropoda melanoleuca]
Length = 304
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 6/124 (4%)
Query: 4 QQGEWLKK--WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L W ++ F+ GDFN + + ++ D + ++E
Sbjct: 163 KEIDELADVYWDVKRRWKTENFIFMGDFNAGCSYVPKKAWKNIRLRTDPEFVWLIGDQED 222
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYD 119
T + + + ++ + ++ S S ++ ++ T L S H P+ E+
Sbjct: 223 TTVKRSTSCAYDRIVLRGQEIISSIVPKSNSTFNFQKAYELTEEEALDVSDHFPV--EFK 280
Query: 120 FEKG 123
+
Sbjct: 281 LQSS 284
>gi|293338471|gb|ADE43488.1| AmpN [Stenotrophomonas maltophilia]
Length = 220
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 40/144 (27%), Gaps = 33/144 (22%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
EWL+ ++ ++G +V+ GD+N +++ + + +
Sbjct: 81 MEWLRPILEEWARSGRDYVLCGDWNIVRSALDIKNWKSNQKNSGCLPEERDWLNALCADH 140
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
E R + + D + + S
Sbjct: 141 GQATDVAAGRGWADAYRLLNPTGEDYTWWSNRGAARANNVGWRIDYQFITPGLRDRLRSC 200
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
R + S H P T++YD
Sbjct: 201 SI----YRDERFSDHAPFTVDYDL 220
>gi|301166270|emb|CBW25845.1| putative exodeoxyribonuclease [Bacteriovorax marinus SJ]
Length = 256
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 23/123 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDGLLIRFPQ 57
+ +I GD+N + I + ++++ + F
Sbjct: 138 HQQFKKDIIITGDYNTAHHPIDLANPKTNTKSTGFLPLEREWMDHFEEIGYVDIFRHFTP 197
Query: 58 EK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
E+ R+ D D +I S HCP+++
Sbjct: 198 EENGHYTWWTYRSNCRERNIGWRIDYFWTNKDMLKNIKGCSHHTDILG----SDHCPISL 253
Query: 117 EYD 119
E +
Sbjct: 254 ELN 256
>gi|171915906|ref|ZP_02931376.1| exodeoxyribonuclease III [Verrucomicrobium spinosum DSM 4136]
Length = 250
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 29/128 (22%), Gaps = 23/128 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + ++ P + GD N N I + P
Sbjct: 125 DAFRLYLK-NLEQTKPVLACGDLNVAHNEIDIARPKENRFSPGFSDQERASFGKLLESGF 183
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F R + + +L +S +
Sbjct: 184 VDTFRHFDSRPHQYSWWSYRANARGNNVGW--RIDYWLASQGLK--DGLKSSIIRPDIHG 239
Query: 109 STHCPLTI 116
S HCP+ +
Sbjct: 240 SDHCPVEL 247
>gi|319944727|ref|ZP_08018991.1| endonuclease/exonuclease/phosphatase [Lautropia mirabilis ATCC
51599]
gi|319741976|gb|EFV94399.1| endonuclease/exonuclease/phosphatase [Lautropia mirabilis ATCC
51599]
Length = 253
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 19/118 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q L W ++ G P +IAGDFN D + + + +
Sbjct: 152 ARQAGALIDWIRAEVPPGAPLLIAGDFNDW------QDALSRLLVERLGVYEVLDSARTF 205
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + L +LS H P+ +
Sbjct: 206 P-----------ALMPCLRMDRIYVRGFAVETAQVLRGLSWA--RLSDHAPVVADLTL 250
>gi|301163088|emb|CBW22637.1| putative transmembrane endonuclease/exonuclease/phosphatase family
protein [Bacteroides fragilis 638R]
Length = 361
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 28/116 (24%), Gaps = 19/116 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L++ T P ++ GDFN +S + + F
Sbjct: 265 QAKTLEQLIRT---TPYPILVCGDFNSLPSSYTYSTVKGDNLQDG-----FQTCGHGYMY 316
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ K L F S H P+ +E
Sbjct: 317 TFRYFKRLL-------RIDYIFHSKEFK----GVDYYSPDLDLCSDHNPVVMEVKM 361
>gi|145534702|ref|XP_001453095.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420795|emb|CAK85698.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 33/126 (26%), Gaps = 22/126 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+ ++ P ++ GD N + I + K
Sbjct: 226 EDLRKKKPTILCGDLNVSHHEIDLANPAGNKKTAGFTQEERDQFTNYLQKGWVDSFRHLH 285
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ R S D +++ +I+ D + S H P+
Sbjct: 286 PKEVKYSYFSARFNSKQSNKGWRLDYFIINKESTDAIIMSDINTAVEG----SDHVPIEC 341
Query: 117 EYDFEK 122
E D K
Sbjct: 342 EVDLRK 347
>gi|289580690|ref|YP_003479156.1| endonuclease/exonuclease/phosphatase [Natrialba magadii ATCC 43099]
gi|289530243|gb|ADD04594.1| Endonuclease/exonuclease/phosphatase [Natrialba magadii ATCC 43099]
Length = 261
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 17/116 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + G V+ GDFN + + Q + +
Sbjct: 162 RQLAELATLIRDR-AGGREVVVTGDFNTFAATDELHEFTDQAALELQVPGETVPARP--- 217
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
D+ V R F S + D D+ +LS H P+ +E D
Sbjct: 218 --------FDDWLVGSRSLDLFCCSPSLDVGRCDVLDV-----QLSDHRPIVLELD 260
>gi|159042592|ref|YP_001531386.1| exodeoxyribonuclease III [Dinoroseobacter shibae DFL 12]
gi|157910352|gb|ABV91785.1| exodeoxyribonuclease III [Dinoroseobacter shibae DFL 12]
Length = 262
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 27/132 (20%), Gaps = 22/132 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPD 49
++ W V+ GD N + +
Sbjct: 133 MRAWFTDTAPEKS--VLVGDLNIAPREDDVWSHKQLLKVVSHTPIEVDTFETTREAGNWV 190
Query: 50 GLLIRFPQEKESTCNVIKRNKSS-LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ E + R + D+ D + + +
Sbjct: 191 DVTRADIPEGQLYSWWSYRARDWSAADKGRRLDHVWASADIAAAAHGSRILREVRGWDQP 250
Query: 109 STHCPLTIEYDF 120
S H P+ +D
Sbjct: 251 SDHAPVFASFDL 262
>gi|289666316|ref|ZP_06487897.1| exodeoxyribonuclease III [Xanthomonas campestris pv. vasculorum
NCPPB702]
Length = 266
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/142 (11%), Positives = 39/142 (27%), Gaps = 33/142 (23%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
EWL+ D+ + +G +V+ GD+N ++ + + +
Sbjct: 127 MEWLRPILDEWLASGRQYVLCGDWNIVRTALDIKNWKSNQKNSGCLPPERDWLNGLCADV 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + R + + D + ++ +
Sbjct: 187 PEDANAAEGRGWVDSYRVLHPQGQDYTWWSNRGAARTNNVGWRIDYQLVTPGLRDTLKAC 246
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
R + S H P ++Y
Sbjct: 247 SI----YREERFSDHAPYIVDY 264
>gi|53713044|ref|YP_099036.1| hypothetical protein BF1755 [Bacteroides fragilis YCH46]
gi|52215909|dbj|BAD48502.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
Length = 287
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 27/105 (25%), Gaps = 3/105 (2%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-GLLIRFPQEKESTCNVIKRNKSSLD 74
++ G+P ++ GDFN ++ S +
Sbjct: 185 ELSDGLPVIVTGDFNSELESDVIKHVTDSANPEHLTDARQASSIVYGPSWSFHDFGKIPY 244
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N ++ Y LS H P+ + +
Sbjct: 245 NKRPL--IDYVFVRNGLKVLRYGILAETENNGFLSDHTPVLVTVE 287
>gi|326798228|ref|YP_004316047.1| endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
gi|326548992|gb|ADZ77377.1| Endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
Length = 282
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 29/107 (27%), Gaps = 3/107 (2%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I G P + GD N + + D + K + +
Sbjct: 179 KEIAQGAPTIFTGDMNGSEETEWYQALAQSALLKDTQKLVAKPYKPNASF---NGFGNEK 235
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + F + + S H P+ ++ + +
Sbjct: 236 SLQATAIIDHIFVTKDFKALKWGVLTDTYHGKFPSDHFPVMVDLEIK 282
>gi|319761098|ref|YP_004125035.1| exodeoxyribonuclease iii xth [Alicycliphilus denitrificans BC]
gi|330822956|ref|YP_004386259.1| exodeoxyribonuclease III Xth [Alicycliphilus denitrificans K601]
gi|317115659|gb|ADU98147.1| exodeoxyribonuclease III Xth [Alicycliphilus denitrificans BC]
gi|329308328|gb|AEB82743.1| exodeoxyribonuclease III Xth [Alicycliphilus denitrificans K601]
Length = 266
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 24/127 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPD------GLLI 53
++K F++ GD N + + + D +
Sbjct: 140 RLKAEREFILCGDINIAHRQADLKNWRSNQKNSGFLPEERAWMTKLLGDDTDGGLVDVYR 199
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
R + C N+ + L + + ++ ++ + K S H P
Sbjct: 200 RLQPDATDACYTWWSNRGQAYANNVGWRLDYHLATPALAQLARTEAIY--KGEKFSDHAP 257
Query: 114 LTIEYDF 120
+T+ Y+
Sbjct: 258 ITVGYEM 264
>gi|188993425|ref|YP_001905435.1| exodeoxyribonuclease III [Xanthomonas campestris pv. campestris
str. B100]
gi|167735185|emb|CAP53397.1| exodeoxyribonuclease III [Xanthomonas campestris pv. campestris]
Length = 296
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 38/142 (26%), Gaps = 33/142 (23%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
EWL+ + + +G +V+ GD+N +++ + + +
Sbjct: 157 MEWLRPILSEWLASGRQYVLCGDWNIVRSALDIKNWKSNQKNSGCLPPERDWLNGLCADL 216
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ E R + + L+
Sbjct: 217 LDEADASNGRGWVDSYRVLHPQGEDYTWWSNRGAARANNVGW--RIDYQLVTPGLRDK-- 272
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
Q+ R + S H P ++Y
Sbjct: 273 VQACSIYREQRFSDHAPYIVDY 294
>gi|329928380|ref|ZP_08282250.1| 5'-nucleotidase, C-terminal domain protein [Paenibacillus sp. HGF5]
gi|328937816|gb|EGG34222.1| 5'-nucleotidase, C-terminal domain protein [Paenibacillus sp. HGF5]
Length = 2084
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 10/124 (8%)
Query: 3 SQQ-GEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q + + V+ GD N + ++ LI K
Sbjct: 1021 RHQIAAVVNGFVKDVVSANPDANVVVLGDLNDFQFTETTNILKGNEL---DNLIETLPLK 1077
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
E N LD+ ++ ++ + + +D + ++S H P+ + D
Sbjct: 1078 EQYTYTYDGNSQVLDHILVSKNLTRSTQVDIVHL----NADFPASKGRVSDHDPVVAQID 1133
Query: 120 FEKG 123
++
Sbjct: 1134 LKEE 1137
>gi|255008849|ref|ZP_05280975.1| putative transmembrane endonuclease/exonuclease/phosphatase family
protein [Bacteroides fragilis 3_1_12]
gi|313146594|ref|ZP_07808787.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313135361|gb|EFR52721.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 361
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 28/116 (24%), Gaps = 19/116 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L++ T P ++ GDFN +S + + F
Sbjct: 265 QAKTLEQLIRT---TPYPILVCGDFNSLPSSYTYSTVKGDNLQDG-----FQTCGHGYMY 316
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ K L F S H P+ +E
Sbjct: 317 TFRYFKRLL-------RIDYIFHSKEFK----GVDYYSPDLDLCSDHNPVVMEVKM 361
>gi|226222950|ref|YP_002757057.1| hypothetical protein Lm4b_00342 [Listeria monocytogenes Clip81459]
gi|225875412|emb|CAS04109.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
Length = 257
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 4/111 (3%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L I+ +P ++ GDFN + S + Q+ LL + P +
Sbjct: 146 ASQLLLHKASLIQEDLPVILLGDFNTEP-STPTYNLITQRYQDAQLLSKTPVKGPLGSFH 204
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
L + N F I SY+ S + S H P+
Sbjct: 205 D---FQPLRPESELEKIDYIFVSNEFHICSYETSTDEIDGCSASDHFPVMA 252
>gi|114328666|ref|YP_745823.1| exodeoxyribonuclease III [Granulibacter bethesdensis CGDNIH1]
gi|114316840|gb|ABI62900.1| exodeoxyribonuclease III [Granulibacter bethesdensis CGDNIH1]
Length = 275
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 12/120 (10%), Positives = 27/120 (22%), Gaps = 22/120 (18%)
Query: 22 PFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLI----RFPQEKEST 62
V+ GD N ++ G + P +++
Sbjct: 157 RTVLVGDLNIAPLEHDVWSHKQLLNVVSHTPPETTRMRQWLETGFVDAIRHFVPSDRKHY 216
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLSTHCPLTIEYDF 120
RN+ R + + + + S H P+++
Sbjct: 217 TWWSYRNRDW-RASDRGRRLDHVWVSPDLVSSLQGHTTLKEARDWERTSDHVPVSVTLSL 275
>gi|167829209|ref|ZP_02460680.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 9]
Length = 624
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 32/136 (23%), Gaps = 24/136 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIP---FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
S+ + W + TG P ++ GD N +
Sbjct: 466 SRAAAKIADWL-ARNPTGTPSEGVLLIGDLNSYTYEDPVRTLESRGYVNLVSSKV---GS 521
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLD 102
+ V LD+ + + ++ D+
Sbjct: 522 GAYSYVYNGEAGYLDHALATNALAWRVKAVHDWHINADEPIALQYTLAYKSAEQQRTYYA 581
Query: 103 TRRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 582 PDAYRSSDHDPVLIDI 597
>gi|71281061|ref|YP_269348.1| extracellular ribonuclease/nuclease fusion protein [Colwellia
psychrerythraea 34H]
gi|71146801|gb|AAZ27274.1| extracellular ribonuclease/nuclease fusion protein [Colwellia
psychrerythraea 34H]
Length = 1310
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 33/139 (23%), Gaps = 23/139 (16%)
Query: 2 LSQQGEW-LKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
L Q L W + F+I GD N L+
Sbjct: 1109 LRTQAANGLTAWLNTKPTGTSDDDFLIIGDLNAYGKEDPINAITNSNY---HNLVADYMG 1165
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DL 101
LD+ + + ++D + ++ D+
Sbjct: 1166 STGYSYSFGGEIGYLDHALASDKLASQVVDTTVWHINADEPRIFDYNTEYKSSEQLSTYF 1225
Query: 102 DTRRSKLSTHCPLTIEYDF 120
+ S H P+ + +
Sbjct: 1226 AEDAYRASDHDPVIVVLNL 1244
>gi|197119100|ref|YP_002139527.1| metal-dependent hydrolase [Geobacter bemidjiensis Bem]
gi|197088460|gb|ACH39731.1| metal-dependent hydrolase [Geobacter bemidjiensis Bem]
Length = 246
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 32/120 (26%), Gaps = 16/120 (13%)
Query: 4 QQGEWLK--KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + +W + P V+ GDFN S +++ +
Sbjct: 141 RQARAVTGPEWLG-HPECLPPAVLCGDFNALFGSS-VYRLLTRQLHDVQ--RKVKGRLPR 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + ++ + S R S H PL + +
Sbjct: 197 GTWP---------AQLPFMRIDHLFVTHNLKVRSVSVPRNPLTRV-ASDHLPLVVTLELP 246
>gi|325919691|ref|ZP_08181693.1| exodeoxyribonuclease III [Xanthomonas gardneri ATCC 19865]
gi|325549799|gb|EGD20651.1| exodeoxyribonuclease III [Xanthomonas gardneri ATCC 19865]
Length = 266
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 37/142 (26%), Gaps = 33/142 (23%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
EWL+ D+ + +G +V+ GD+N ++ + + +
Sbjct: 127 MEWLRPILDEWLASGRQYVLCGDWNIVRTALDIKNWKSNQKNSGCLPPERDWLNGLCADA 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ E R + + D + +
Sbjct: 187 PEEANAANGRGWVDTYRVLHPQGEDYTWWSNRGAARANNVGWRIDYQLVTPWMRDKLQRC 246
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
R + S H P ++Y
Sbjct: 247 AI----YREQRFSDHAPYIVDY 264
>gi|296119006|ref|ZP_06837579.1| exodeoxyribonuclease III [Corynebacterium ammoniagenes DSM 20306]
gi|295968104|gb|EFG81356.1| exodeoxyribonuclease III [Corynebacterium ammoniagenes DSM 20306]
Length = 269
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 34/131 (25%), Gaps = 19/131 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLL 52
L ++ + K ++ GDFN + D +Q+++ GL
Sbjct: 135 ALARY--AEGKKREKLLLTGDFNIAPRNEDVWDLELFRGKTHVTEPERAAFQRLEEAGLE 192
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLST 110
Q E KS + S + + S
Sbjct: 193 EVTRQYTEKDRWTYFDYKSMRFQKDEGMRIDFQMATKSLAEKVTGAGLDRKERAEKGTSD 252
Query: 111 HCPLTIEYDFE 121
H L ++D
Sbjct: 253 HLLLWADFDLP 263
>gi|297182400|gb|ADI18565.1| exonuclease IIi [uncultured gamma proteobacterium HF4000_23L14]
Length = 254
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/144 (11%), Positives = 39/144 (27%), Gaps = 30/144 (20%)
Query: 3 SQQG-------EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
+Q + L G ++ GD+N I + + +
Sbjct: 115 ERQAFKMEFISDRLLPHLHALQNDGRQYIYCGDWNIAHKKIDLKNWQSNQKNSGFLPEER 174
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
Q++ R ++ L D + + + +
Sbjct: 175 AWLDKLYEEVGYIDAFREINQDEFQYTWWSNRGQAWLHNTGWRLDYQVVSSNLAGLATAC 234
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
+ ++ + S H PL ++Y+
Sbjct: 235 EI----YKKERFSDHSPLIMDYNL 254
>gi|253571354|ref|ZP_04848761.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|251839307|gb|EES67391.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 315
Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 29/128 (22%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+P ++ GDFN + + D + + +
Sbjct: 189 KNLPAILTGDFNVDQTHQSYDAFVSKGVLCDSYEKCDYRYALNGT-----FNNFDPNSFT 243
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSK------------------------LSTHCPL 114
+ + + SF + Y R + S H P+
Sbjct: 244 ESRIDHIFVSPSFHVKRYGVLTDTYRSVRENSKKEEVRDCPEEITIKAYEARTPSDHFPV 303
Query: 115 TIEYDFEK 122
+E F++
Sbjct: 304 KVELVFDQ 311
>gi|307591319|ref|YP_003900118.1| endonuclease I [Cyanothece sp. PCC 7822]
gi|306986173|gb|ADN18052.1| Endonuclease I [Cyanothece sp. PCC 7822]
Length = 573
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 10/117 (8%)
Query: 4 QQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + + ++ ++T ++ GDFN +S + L E
Sbjct: 213 EQAKLVNQFVSDLLETNPTASIIVLGDFNDTPDSPAVQTLLGTVL---ENLTEKIPLAER 269
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ K N+ +D ++ + + V + + + S H P+ +
Sbjct: 270 YSFIFKGNRELIDQILVSENLASGGQ-PEIKAVHVN----AGKPGRASDHDPVIASF 321
>gi|227874670|ref|ZP_03992832.1| possible exodeoxyribonuclease III [Mobiluncus mulieris ATCC 35243]
gi|269976389|ref|ZP_06183379.1| exodeoxyribonuclease III [Mobiluncus mulieris 28-1]
gi|227844743|gb|EEJ54890.1| possible exodeoxyribonuclease III [Mobiluncus mulieris ATCC 35243]
gi|269935410|gb|EEZ91954.1| exodeoxyribonuclease III [Mobiluncus mulieris 28-1]
Length = 294
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 33/147 (22%), Gaps = 30/147 (20%)
Query: 6 GEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDF------------WQKMDPDGL 51
+ L A + P +I GDFN + + +
Sbjct: 148 VQQLSARAMAGAGSDTPQEALICGDFNIVRTARDIKNWKPNHNKTSGVMDEEIAFLDAWM 207
Query: 52 LI----------------RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS 95
R K+ + D + S
Sbjct: 208 ADTLSGSKRLPCVDVGRALAGDTDGPYTWWSWRGKAYDNNAGWRLDYHMATPGLAGQAQS 267
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYDFEK 122
++ + H P+T+ YDF +
Sbjct: 268 AAVYRAPAYDARFTDHAPVTVAYDFPE 294
>gi|154707400|ref|YP_001425116.1| exodeoxyribonuclease III [Coxiella burnetii Dugway 5J108-111]
gi|154356686|gb|ABS78148.1| exodeoxyribonuclease III [Coxiella burnetii Dugway 5J108-111]
Length = 259
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 23/128 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDT-------------------DDFWQKMDPDGL 51
K + + F+I GD+N I D+ + K+
Sbjct: 131 KRLKNIVHSKRSFIICGDWNIVHKEIDIKNFKSNQKHSGCLPEERAWLDEVFTKVGLVDA 190
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
Q+ + R ++ +I + +S+ + + S H
Sbjct: 191 FRVVNQKPDQYTWWSSRGRAWEKNVGW--RIDYQVITSDLKNS--VKSERIYKDKRFSDH 246
Query: 112 CPLTIEYD 119
PL I+Y+
Sbjct: 247 APLIIDYE 254
>gi|325528671|gb|EGD05753.1| putative extracellular endonuclease/exonuclease/phosphatase
[Burkholderia sp. TJI49]
Length = 402
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 34/137 (24%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ L W G ++ GDFN + L+ ++
Sbjct: 265 RAAAKLADWLAGTPTGVAGQGVLLIGDFNSYTYEDPIRLLESRGY---RNLVSRWIGDKA 321
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-----------------QSDLDTR 104
V LD+ + + + ++ D Q+
Sbjct: 322 YSYVYNGEAGYLDHALASLPLASHVKAVHEWHINADEPVALQYTLAYKTAAQQQTYYAPD 381
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ I+
Sbjct: 382 AYRSSDHDPVLIDIALP 398
>gi|153005530|ref|YP_001379855.1| endonuclease/exonuclease/phosphatase [Anaeromyxobacter sp. Fw109-5]
gi|152029103|gb|ABS26871.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter sp. Fw109-5]
Length = 260
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 34/121 (28%), Gaps = 14/121 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L + P V+ GDFN N +++ R
Sbjct: 133 KQAAQLLSADILRDTALAHPLVLVGDFNSLSNRSAVPRWLRRQLVDCAHAARNEAPTF-- 190
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+D++F +V + R + S H PL ++ + +
Sbjct: 191 -----------PSRFPLLRLDRVFVDSAFRVVGCEVVHTPLAR-RASDHLPLVVDLEPAE 238
Query: 123 G 123
Sbjct: 239 S 239
>gi|289671111|ref|ZP_06492186.1| exodeoxyribonuclease III [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 266
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/142 (11%), Positives = 39/142 (27%), Gaps = 33/142 (23%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
EWL+ D+ + +G +V+ GD+N ++ + + +
Sbjct: 127 MEWLRPILDEWLASGRQYVLCGDWNIVRTALDIKNWKSNQKNSGCLPPERDWLNGLCADV 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + R + + D + ++ +
Sbjct: 187 PEDANAAEGRGWVDSYRVLHPQGQDYTWWSNRGAARTNNVGWRIDYQLVTPGLRDTLKAC 246
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
R + S H P ++Y
Sbjct: 247 SI----YREERFSDHAPYIVDY 264
>gi|134096852|ref|YP_001102513.1| putative large secreted protein [Saccharopolyspora erythraea NRRL
2338]
gi|291005103|ref|ZP_06563076.1| putative large secreted protein [Saccharopolyspora erythraea NRRL
2338]
gi|133909475|emb|CAL99587.1| putative large secreted protein [Saccharopolyspora erythraea NRRL
2338]
Length = 602
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 31/117 (26%), Gaps = 14/117 (11%)
Query: 5 QGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + ++ +ADQ V+AGD N S D P E+ S
Sbjct: 495 QAKAVRAFADQLRAVDDQARIVVAGDLNDFGFSPVVRTLTADGALVDAAEGLPPAERYSY 554
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEY 118
+ + L + YD + S H P +
Sbjct: 555 VY-----------EGNSQALDHILTSPAAGTADYDVVHVNAEFADQASDHDPQIVRL 600
>gi|119385102|ref|YP_916158.1| exodeoxyribonuclease III Xth [Paracoccus denitrificans PD1222]
gi|119374869|gb|ABL70462.1| exodeoxyribonuclease III Xth [Paracoccus denitrificans PD1222]
Length = 261
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 10/126 (7%), Positives = 21/126 (16%), Gaps = 22/126 (17%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPDGLLIRFP 56
++ GD N + +
Sbjct: 137 HADRPARSIMVGDLNIAPREDDVWSHKQLLKIVSHTPIEVEHLGAAQDAGKWVDITRKDI 196
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLSTHCPL 114
+ R D R + + + + S H P+
Sbjct: 197 PQGLLYSWWSYR-ARDWDAADKGRRLDHIWATPDIANAGHNSRILRPLRGWQQPSDHVPV 255
Query: 115 TIEYDF 120
+D
Sbjct: 256 LASFDL 261
>gi|56460629|ref|YP_155910.1| extracellular nuclease [Idiomarina loihiensis L2TR]
gi|56179639|gb|AAV82361.1| Extracellular nuclease [Idiomarina loihiensis L2TR]
Length = 589
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 33/127 (25%), Gaps = 18/127 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q L +W + V+ GDFN P +
Sbjct: 468 QSSRELIQWIQSESLANS--VLLGDFNAYYQEDPVRYFADNGF-------YNPSGAKDYS 518
Query: 64 NVIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSY-DQSDLDTRRSKLSTHCPL 114
V +LD+ + + + Y D++ + S H PL
Sbjct: 519 YVYDSQAGALDHVFVTDSLKDAIQEVYHLPFNADEPQLYDYRDEAYFAEGPFRSSDHDPL 578
Query: 115 TIEYDFE 121
++ F
Sbjct: 579 VLDLVFS 585
>gi|302383396|ref|YP_003819219.1| endonuclease/exonuclease/phosphatase [Brevundimonas subvibrioides
ATCC 15264]
gi|302194024|gb|ADL01596.1| Endonuclease/exonuclease/phosphatase [Brevundimonas subvibrioides
ATCC 15264]
Length = 245
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 16/121 (13%)
Query: 3 SQQGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
Q L K W + P ++AGDFN + + Q+
Sbjct: 137 RLQAAALAGKDWMG-HAECQGPTILAGDFNATSITRPYQTLTR---HLADCQRQIGQKPT 192
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+D+ + + + +FS + S H PL ++++F
Sbjct: 193 IKTFPSGFPAIRIDHVFVSPHIRVTGVRAAFSPL----------ARMASDHLPLIVDFEF 242
Query: 121 E 121
+
Sbjct: 243 Q 243
>gi|268679182|ref|YP_003303613.1| exodeoxyribonuclease III [Sulfurospirillum deleyianum DSM 6946]
gi|268617213|gb|ACZ11578.1| exodeoxyribonuclease III [Sulfurospirillum deleyianum DSM 6946]
Length = 254
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 35/141 (24%), Gaps = 26/141 (18%)
Query: 2 LSQQGEWLKKWA---DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------- 45
L + ++ + + G +I GD N I + +
Sbjct: 118 LRHKMQFYSDFLAHTEALRTMGKGIIICGDVNTAHREIDLANPKANEDISGFLPIERAWI 177
Query: 46 --MDPDGLLIRFPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
+ G L F + + R+ + F I +
Sbjct: 178 DTLLAKGYLDTFREVHGNVKDAYSWWSYRSGARERNVGW--RIDYFFISKELQKNL--KD 233
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
+ S HCP+ IE
Sbjct: 234 AFILPHIQGSDHCPVGIEITL 254
>gi|254474796|ref|ZP_05088182.1| endonuclease/exonuclease/phosphatase family protein [Ruegeria sp.
R11]
gi|214029039|gb|EEB69874.1| endonuclease/exonuclease/phosphatase family protein [Ruegeria sp.
R11]
Length = 333
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 33/117 (28%), Gaps = 2/117 (1%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E L D +P VI GD N + D D + + +
Sbjct: 219 QFELLLDAVDD-FAPDMPVVIGGDLNTGNHLPPDFDWKRETLFDLARSRGYDWSATPDGM 277
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
R + F I S S LD+ LS H + ++D
Sbjct: 278 TT-RASLITPHPDRVMKLDWFCIRGLRSTDSALVPSLDSNDRPLSDHDAVWAQFDLS 333
>gi|87303809|ref|ZP_01086533.1| Exodeoxyribonuclease III xth [Synechococcus sp. WH 5701]
gi|87281674|gb|EAQ73663.1| Exodeoxyribonuclease III xth [Synechococcus sp. WH 5701]
Length = 97
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 21/78 (26%)
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ F + R+ + D+ + S
Sbjct: 6 GLQDVFRVFEPDAGHWSWWDYRSGAWDRDRGWRIDHIYLCDELLGLARSCVIHKSVRGND 65
Query: 107 KLSTHCPLTIEYDFEKGN 124
K S H P++++ D+ +
Sbjct: 66 KPSDHAPVSVDLDWPPSD 83
>gi|254932552|ref|ZP_05265911.1| endonuclease/exonuclease/phosphatase [Listeria monocytogenes
HPB2262]
gi|293584109|gb|EFF96141.1| endonuclease/exonuclease/phosphatase [Listeria monocytogenes
HPB2262]
gi|328476050|gb|EGF46765.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes 220]
gi|332310743|gb|EGJ23838.1| Endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes str. Scott A]
Length = 257
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 4/111 (3%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L I+ +P ++ GDFN + S + Q+ LL + P +
Sbjct: 146 ASQLLLHKASLIQEDLPVILLGDFNTEP-STPTYNLITQRYQDAQLLSKTPVKGPLGSFH 204
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
L + N F I SY+ S + S H P+
Sbjct: 205 D---FQPLRPESELEKIDYIFVSNEFHICSYETSTDEIDGCSASDHFPVMA 252
>gi|46906561|ref|YP_012950.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes serotype 4b str. F2365]
gi|47091460|ref|ZP_00229257.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes str. 4b H7858]
gi|46879826|gb|AAT03127.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes serotype 4b str. F2365]
gi|47020137|gb|EAL10873.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes str. 4b H7858]
gi|328467778|gb|EGF38824.1| endonuclease/exonuclease/phosphatase family protein [Listeria
monocytogenes 1816]
Length = 257
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 4/111 (3%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L I+ +P ++ GDFN + S + Q+ LL + P +
Sbjct: 146 ASQLLLHKASLIQEDLPVILLGDFNTEP-STPTYNLITQRYQDAQLLSKTPVKGPLGSFH 204
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
L + N F I SY+ S + S H P+
Sbjct: 205 D---FQPLRPESELEKIDYIFVSNEFHICSYETSTDEIDGCSASDHFPVMA 252
>gi|156742734|ref|YP_001432863.1| endonuclease/exonuclease/phosphatase [Roseiflexus castenholzii DSM
13941]
gi|156234062|gb|ABU58845.1| Endonuclease/exonuclease/phosphatase [Roseiflexus castenholzii DSM
13941]
Length = 1641
Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 34/140 (24%), Gaps = 22/140 (15%)
Query: 1 MLSQQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
+ + L W + +I GD N
Sbjct: 714 VRRNAAQELVAWLAGNPTGTGDNDILILGDLNSYAQEDPIDVLRAAGYTDLAQT---FIG 770
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDL 101
E+ V LDY + + + S++ Y+ S
Sbjct: 771 DEAYSYVFNGQWGYLDYALASPSALAKVSGVVEYHINADEPSVLDYNTNFKSAGQQVSLF 830
Query: 102 DTRRSKLSTHCPLTIEYDFE 121
T + + S H P+ + +
Sbjct: 831 ATDQYRTSDHDPILVGLNLN 850
>gi|325838966|ref|ZP_08166749.1| endonuclease/exonuclease/phosphatase family protein [Turicibacter
sp. HGF1]
gi|325490621|gb|EGC92933.1| endonuclease/exonuclease/phosphatase family protein [Turicibacter
sp. HGF1]
Length = 254
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 12/115 (10%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L ++ +P +I GD N + ++ L +K
Sbjct: 152 QLLNDLHLREQNISLPTLIMGDMNSEPQDEEIKAIVNNEIIELNDL----TDKLDYT--- 204
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
DY I S + LS H P+ + F+
Sbjct: 205 -----FHDYGKIKIKIDYIFATKSVNASKAVAWADCFDGVYLSDHYPVMVRVTFK 254
>gi|153872789|ref|ZP_02001579.1| Endonuclease/Exonuclease/phosphatase [Beggiatoa sp. PS]
gi|152070745|gb|EDN68421.1| Endonuclease/Exonuclease/phosphatase [Beggiatoa sp. PS]
Length = 733
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 34/149 (22%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQE 58
Q + L W D F+I GD N + + + Q
Sbjct: 212 QAAQELTTWLATDPTNSGDPDFLIIGDLNAYAQEAPIVTIQNAGYTNLLDT------YQG 265
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR------------- 105
++ + + LD+ + + + S ++ D+ +
Sbjct: 266 TKAYSYIFDGQRGYLDHALANNSLTAQVTGVSEWPINADEPSVFDYNDGVTDTSSSTDIV 325
Query: 106 ----------SKLSTHCPLTIEYDFEKGN 124
+ S H P+ I + +
Sbjct: 326 NPAGLYSISPFRSSDHDPVLIGLQLQTDS 354
>gi|126665590|ref|ZP_01736572.1| Endonuclease/exonuclease/phosphatase [Marinobacter sp. ELB17]
gi|126630218|gb|EBA00834.1| Endonuclease/exonuclease/phosphatase [Marinobacter sp. ELB17]
Length = 536
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 15/130 (11%)
Query: 4 QQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE- 60
+Q + L + Q K+ +I GDFN ++ ++ F
Sbjct: 409 KQAKTLHQQLGQLDKSNALAGTLITGDFNSYSKEQPISELARAGY--TNMVAHFHPCTPV 466
Query: 61 ---STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------SKLST 110
K + SLD+ + K ++ ++ DQ + R + S
Sbjct: 467 LCEHYSYRFKGARGSLDHALASAALKPRVLSAKVWNINADQPRIADYRSHSSPQPWRSSD 526
Query: 111 HCPLTIEYDF 120
H PL +
Sbjct: 527 HNPLITDIKL 536
>gi|154244152|ref|YP_001415110.1| exodeoxyribonuclease III Xth [Xanthobacter autotrophicus Py2]
gi|154158237|gb|ABS65453.1| exodeoxyribonuclease III Xth [Xanthobacter autotrophicus Py2]
Length = 290
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 26/120 (21%), Gaps = 21/120 (17%)
Query: 20 GIPFVIAGDFNRKINSIGDT--------------------DDFWQKMDPDGLLIRFPQEK 59
G V+ GD N D + P +
Sbjct: 170 GRHAVVVGDLNIAPLETDVWGHKQLLNVVSHTPVEVERLNRFQASGPWVDVMRTFVPPKD 229
Query: 60 ESTCNVIKRNKSSLDY-FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ R+ D+ + S + K S H P+++ +
Sbjct: 230 KLFTWWSYRSPDYTANDRGRRLDHVWASQSLAPSAQAMTVLKDARGWEKPSDHVPVSLTF 289
>gi|293375717|ref|ZP_06621989.1| endonuclease/exonuclease/phosphatase family protein [Turicibacter
sanguinis PC909]
gi|292645660|gb|EFF63698.1| endonuclease/exonuclease/phosphatase family protein [Turicibacter
sanguinis PC909]
Length = 254
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 12/115 (10%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L ++ +P +I GD N + ++ L +K
Sbjct: 152 QLLNDLHLREQNISLPTLIMGDMNSEPQDEEIKAIVNNEIIELNDL----TDKLDYT--- 204
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
DY I S + LS H P+ + F+
Sbjct: 205 -----FHDYGKIKIKIDYIFATKSVNASKAVAWADCFDGVYLSDHYPVMVRVTFK 254
>gi|29349191|ref|NP_812694.1| hypothetical protein BT_3783 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29341099|gb|AAO78888.1| putative endonuclease/exonuclease/phosphatase family protein
[Bacteroides thetaiotaomicron VPI-5482]
Length = 315
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 29/128 (22%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+P ++ GDFN + + D + + +
Sbjct: 189 KNLPAILTGDFNVDQTHQSYDAFVSKGVLCDSYEKCDYRYALNGT-----FNNFDPNSFT 243
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSK------------------------LSTHCPL 114
+ + + SF + Y R + S H P+
Sbjct: 244 ESRIDHIFVSPSFHVKRYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPV 303
Query: 115 TIEYDFEK 122
+E F++
Sbjct: 304 KVELVFDQ 311
>gi|298386889|ref|ZP_06996444.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 1_1_14]
gi|298260563|gb|EFI03432.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 1_1_14]
Length = 315
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 29/128 (22%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+P ++ GDFN + + D + + +
Sbjct: 189 KNLPAILTGDFNVDQTHQSYDAFVSKGVLCDSYEKCDYRYALNGT-----FNNFDPNSFT 243
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSK------------------------LSTHCPL 114
+ + + SF + Y R + S H P+
Sbjct: 244 ESRIDHIFVSPSFHVKRYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPV 303
Query: 115 TIEYDFEK 122
+E F++
Sbjct: 304 KVELVFDQ 311
>gi|325924898|ref|ZP_08186330.1| exodeoxyribonuclease III [Xanthomonas perforans 91-118]
gi|325544685|gb|EGD16036.1| exodeoxyribonuclease III [Xanthomonas perforans 91-118]
Length = 266
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/142 (10%), Positives = 39/142 (27%), Gaps = 33/142 (23%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+WL+ +Q + +G +V+ GD+N ++ + + +
Sbjct: 127 MQWLRPILEQWLASGRQYVLCGDWNIVRTALDIKNWKSNQKNSGCLPPERDWLNGLCADA 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + R + + D + ++ +
Sbjct: 187 PEDTNPAEGRGWVDSYRVLHPQGQDYTWWSNRGAARANNVGWRIDYQLVTPGLRDTLKAC 246
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
R + S H P ++Y
Sbjct: 247 SI----YREERFSDHAPYIVDY 264
>gi|146276446|ref|YP_001166605.1| endonuclease/exonuclease/phosphatase [Rhodobacter sphaeroides ATCC
17025]
gi|145554687|gb|ABP69300.1| Endonuclease/exonuclease/phosphatase [Rhodobacter sphaeroides ATCC
17025]
Length = 339
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/144 (9%), Positives = 40/144 (27%), Gaps = 28/144 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-----------------------TDD 41
+ W+++ + ++ GDFN +
Sbjct: 196 ECVWIRRRVAALLARHQSVMVMGDFNDGPGLDEYEKLFGHSGVEIVLGLDEPPELRLHEP 255
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSY 96
+ + ++ + + ++ LD+ +I D + + +
Sbjct: 256 HARMALTQRVGVQPSSARFWLAPEDQYFEALLDFIMISPDLAEKGPRWRIWHPLNDPNCF 315
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
+L S H P+T++ +
Sbjct: 316 RIPELQEALLAASDHFPVTLDIEL 339
>gi|311742697|ref|ZP_07716506.1| exodeoxyribonuclease III [Aeromicrobium marinum DSM 15272]
gi|311314325|gb|EFQ84233.1| exodeoxyribonuclease III [Aeromicrobium marinum DSM 15272]
Length = 274
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 33/130 (25%), Gaps = 20/130 (15%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDG 50
+ +G ++ GD N + F + D
Sbjct: 145 ARMAEISASGTHGLLTGDLNVAHTPRDIRNAKGNLKKAGFLPEERAHFDRWFDELGWVDV 204
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
R ++ + D++ D + + + ++ + S
Sbjct: 205 PRRLAGDVDGPYTWWSMRGQAFDNDTGWRIDHQIATPDLATAATTAAVDRAESWAERWSD 264
Query: 111 HCPLTIEYDF 120
H PL ++Y
Sbjct: 265 HAPLVVDYAL 274
>gi|261416712|ref|YP_003250395.1| exodeoxyribonuclease III Xth [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373168|gb|ACX75913.1| exodeoxyribonuclease III Xth [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302325662|gb|ADL24863.1| exodeoxyribonuclease III [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 265
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 30/125 (24%), Gaps = 23/125 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRF 55
Q + G V GD+N I +
Sbjct: 134 KQWLADGKHVVTVGDYNTCHKEIDIARPKENENVSGFLPIERAWMDKYVENGFVDTFRTL 193
Query: 56 PQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ ++ R + D ++VS + S HCP+
Sbjct: 194 HPDTRDAYSWWSNRFGARERNVGWRLDYGFVDAALMPNVVSSEI----LSNVMGSDHCPI 249
Query: 115 TIEYD 119
++E +
Sbjct: 250 SLELE 254
>gi|325106309|ref|YP_004275963.1| Endonuclease/exonuclease/phosphatase [Pedobacter saltans DSM 12145]
gi|324975157|gb|ADY54141.1| Endonuclease/exonuclease/phosphatase [Pedobacter saltans DSM 12145]
Length = 287
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 3/108 (2%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ ++ G P ++ GDFN ++ + + D + + + N L
Sbjct: 181 KNMRKGTPVILTGDFNGNPSTEWYKEIAQSNVLFDTYSQTPIKLEGNPTYQEYGNAELLK 240
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + F + + S H P+ ++
Sbjct: 241 GNDV---IDHIFTTKDFKVKKWGILSNTFHGKYPSDHFPVITFLEWNS 285
>gi|78049571|ref|YP_365746.1| exodeoxyribonuclease III [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78038001|emb|CAJ25746.1| exodeoxyribonuclease III [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 266
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/142 (10%), Positives = 39/142 (27%), Gaps = 33/142 (23%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+WL+ +Q + +G +V+ GD+N ++ + + +
Sbjct: 127 MQWLRPILEQWLASGRQYVLCGDWNIVRTALDIKNWKSNQKNSGCLPPERDWLNGLCADA 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + R + + D + ++ +
Sbjct: 187 PEDANPAEGRGWVDSYRVLHPQGQDYTWWSNRGAARANNVGWRIDYQLVTPGLRDTLKAC 246
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
R + S H P ++Y
Sbjct: 247 SI----YREERFSDHAPYIVDY 264
>gi|297671007|ref|XP_002813640.1| PREDICTED: deoxyribonuclease gamma-like isoform 2 [Pongo abelii]
Length = 305
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 6/124 (4%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + + D + F+ GDFN + + ++ D + ++E
Sbjct: 163 REIDELVEVYMDVKHRWKAENFIFMGDFNAGCSYVPKKAWKNIRLRTDPRFVWLIGDQED 222
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYD 119
T N + + ++ + ++ S S+ + ++ T L S H P+ E+
Sbjct: 223 TTVKKSTNCAYDRIVLRGQEIVSSVVPKSNSVFDFQKAYKLTEEEALDVSDHFPV--EFK 280
Query: 120 FEKG 123
+
Sbjct: 281 LQSS 284
>gi|218264592|ref|ZP_03478387.1| hypothetical protein PRABACTJOHN_04093 [Parabacteroides johnsonii
DSM 18315]
gi|218221900|gb|EEC94550.1| hypothetical protein PRABACTJOHN_04093 [Parabacteroides johnsonii
DSM 18315]
Length = 373
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 31/124 (25%), Gaps = 20/124 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ ++Q + + + ++ GDFN S G L
Sbjct: 270 IRARQARAVAEEIKKI--DTDYILVCGDFNDTPISYAHRTI-------QGPLKDAYAASG 320
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V N L + ++ + S H P+
Sbjct: 321 RGVGVTYNENFF------WFRIDNILHSANMKPINCTIDKVRY-----SDHYPMWCYLQL 369
Query: 121 EKGN 124
++G+
Sbjct: 370 KEGD 373
>gi|149371411|ref|ZP_01890897.1| extracellular nuclease [unidentified eubacterium SCB49]
gi|149355549|gb|EDM44108.1| extracellular nuclease [unidentified eubacterium SCB49]
Length = 1580
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 39/154 (25%), Gaps = 33/154 (21%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF------ 55
+ L W D F+I GD N T D G +
Sbjct: 1171 EAAAALVDWLATDPTNSEDPDFLIIGDLNSYKKETPITAIIAGADDTVGTSDDYTDLLEN 1230
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRD--------NKNFLIDNSFSIVSYDQSDLDTRRS- 106
++ V LDY + + + + S++ Y+ D S
Sbjct: 1231 FSGDDAYSYVFDGQLGYLDYSLASNNLLSQITGTISWNINADEISVLDYNDGIQDAGESS 1290
Query: 107 ----------------KLSTHCPLTIEYDFEKGN 124
+ S H P+ + + N
Sbjct: 1291 FERESNALPIYESNMFRASDHDPILVGMNLVSAN 1324
>gi|32450017|gb|AAH54141.1| Drng-A-prov protein [Xenopus laevis]
Length = 265
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 2/106 (1%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++ F+ GD N + + ++ + + T N +
Sbjct: 143 KQKWNSENFIFMGDLNAGCSYVPKKSWKNIRLRNHTEFVWLIGDNNDTTVKSSTNCAYDR 202
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
V+ + ++ S ++ + + T L S H P+ +
Sbjct: 203 IVVVGEKLVSSIVPGSANVFDFMVAYGLTEEQALEVSDHFPIEVRL 248
>gi|21244621|ref|NP_644203.1| exodeoxyribonuclease III [Xanthomonas axonopodis pv. citri str.
306]
gi|21110303|gb|AAM38739.1| exodeoxyribonuclease III [Xanthomonas axonopodis pv. citri str.
306]
Length = 266
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/142 (10%), Positives = 39/142 (27%), Gaps = 33/142 (23%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+WL+ D+ + +G +V+ GD+N ++ + + +
Sbjct: 127 MQWLRPILDEWLASGRQYVLCGDWNIVRTALDIKNWKSNQKNSGCLPPERDWLNGLCADA 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + R + + D + ++ +
Sbjct: 187 PEDASAADGRGWVDSYRVLHPQGQDYTWWSNRGAARANNVGWRIDYQLVTPGLRDALKAC 246
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
R + S H P ++Y
Sbjct: 247 SI----YREERFSDHAPYIVDY 264
>gi|294625183|ref|ZP_06703825.1| exodeoxyribonuclease III [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|294666113|ref|ZP_06731371.1| exodeoxyribonuclease III [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292600502|gb|EFF44597.1| exodeoxyribonuclease III [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292604127|gb|EFF47520.1| exodeoxyribonuclease III [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 266
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/142 (10%), Positives = 39/142 (27%), Gaps = 33/142 (23%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+WL+ D+ + +G +V+ GD+N ++ + + +
Sbjct: 127 MQWLRPILDEWLASGRQYVLCGDWNIVRTALDIKNWKSNQKNSGCLPPERDWLNGLCADA 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + R + + D + ++ +
Sbjct: 187 PEDASAADGRGWVDSYRVLHPQGQDYTWWSNRGAARANNVGWRIDYQLVTPGLRDTLKAC 246
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
R + S H P ++Y
Sbjct: 247 SI----YREERFSDHAPYIVDY 264
>gi|171319848|ref|ZP_02908930.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria MEX-5]
gi|171094910|gb|EDT39940.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria MEX-5]
Length = 606
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 32/137 (23%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ L W G ++ GDFN + L+ +
Sbjct: 469 RAAAKLADWLAGTPTGVAGQGTLLIGDFNSYTYEDPIRLLESRGY---RNLVSRWIGANA 525
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTR 104
V LD+ + + + ++ D+
Sbjct: 526 YSYVYNGEAGYLDHALASLPLASHVKAVHEWHINADEPLALQYTLAYKSTEQQKTYYAPD 585
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ I+
Sbjct: 586 AYRSSDHDPVLIDIALP 602
>gi|170697069|ref|ZP_02888165.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
IOP40-10]
gi|170138243|gb|EDT06475.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
IOP40-10]
Length = 604
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 32/137 (23%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ L W G ++ GDFN + L+ +
Sbjct: 467 RAAAKLADWLAGTPTGVAGQGTLLIGDFNSYTYEDPIRLLESRGY---RNLVSRWIGANA 523
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTR 104
V LD+ + + + ++ D+
Sbjct: 524 YSYVYNGEAGYLDHALASLPLASHVKAVHEWHINADEPLALQYTLAYKSAEQQKTYYAPD 583
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ I+
Sbjct: 584 AYRSSDHDPVLIDIALP 600
>gi|281425257|ref|ZP_06256170.1| hypothetical protein HMPREF0971_02229 [Prevotella oris F0302]
gi|281400550|gb|EFB31381.1| putative endonuclease/exonuclease/phosphatase family protein
[Prevotella oris F0302]
Length = 299
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 12/121 (9%), Positives = 26/121 (21%), Gaps = 6/121 (4%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + + + G ++ GDFN D + +
Sbjct: 183 RESARLIIQRMKE-LTGGKYTILTGDFNANQTDESYKMFSESGFLRDCYVNAHQRMAPVG 241
Query: 63 CNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
I + SY +S H P+ ++
Sbjct: 242 TWNDYMQDYPGVARIDHIFVTKDFDINHYGIFTNSYWLGKTRRN---ISDHYPVMVKLQM 298
Query: 121 E 121
Sbjct: 299 N 299
>gi|298387677|ref|ZP_06997228.1| transmembrane endonuclease/exonuclease/phosphatase [Bacteroides sp.
1_1_14]
gi|298259533|gb|EFI02406.1| transmembrane endonuclease/exonuclease/phosphatase [Bacteroides sp.
1_1_14]
Length = 372
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 20/119 (16%)
Query: 3 SQQGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +Q I P ++ GDFN +S +K++ F
Sbjct: 273 KRAAQA--EHINQLISASPYPTLVCGDFNSLPSSYVYQTVKGEKLNDG-----FQTCGHG 325
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ K L + F V Y DL+ S H P+ +
Sbjct: 326 YMYTFRYFK-------HLLRIDYILHSSEFQGVDYFSPDLEY-----SDHNPVVMRMRL 372
>gi|224159467|ref|XP_002199909.1| PREDICTED: similar to APEX nuclease, partial [Taeniopygia guttata]
Length = 235
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 26/121 (21%), Gaps = 23/121 (19%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-------------------DGLLIRF 55
+++ P ++ GD N I + P D +
Sbjct: 115 RRLDARKPVLLCGDLNVAHADIDLCHPRANRASPGFTPQERDGFSRLLAAGFVDSFRHLY 174
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
P + + + ++ S HCP+T
Sbjct: 175 PAARGAFTFWTYLGGARARNVGW--RLDYAVVSQRLLGALC--DSKIRNTVPGSDHCPIT 230
Query: 116 I 116
Sbjct: 231 A 231
>gi|163848327|ref|YP_001636371.1| endonuclease/exonuclease/phosphatase [Chloroflexus aurantiacus
J-10-fl]
gi|222526243|ref|YP_002570714.1| Endonuclease/exonuclease/phosphatase [Chloroflexus sp. Y-400-fl]
gi|163669616|gb|ABY35982.1| Endonuclease/exonuclease/phosphatase [Chloroflexus aurantiacus
J-10-fl]
gi|222450122|gb|ACM54388.1| Endonuclease/exonuclease/phosphatase [Chloroflexus sp. Y-400-fl]
Length = 1118
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 34/135 (25%), Gaps = 22/135 (16%)
Query: 6 GEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L W D +I GD N Q L+ +
Sbjct: 708 ANTLAAWLASDPTGINDPDVLIIGDLNSYAKEDPIRALETQGY---ENLVERFGGANAYS 764
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDTRRS 106
V LDY + + + + S++ Y+ S
Sbjct: 765 YVFNGQWGYLDYALANASLSPQIAGIAEWHINADEPSVLDYNTNFKSAGQISSLYAPDFY 824
Query: 107 KLSTHCPLTIEYDFE 121
+ S H P+ + D +
Sbjct: 825 RTSDHDPIVVGLDLD 839
>gi|322806100|emb|CBZ03667.1| endonuclease/Exonuclease/phosphatase family protein [Clostridium
botulinum H04402 065]
Length = 327
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------TDDFWQKMDPDGL 51
+ QQ +LK + ++ K G ++ GD+N I D + +
Sbjct: 201 IRKQQLSFLKNYIIKEYKKGNYIIVGGDWNHLILGTDPLMFKTTEKWPDWLQKIPNDFKP 260
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++ FL+ ++ S ++ + + H
Sbjct: 261 EGFKWVADKNVPTTRTDATPYKKGENFTAVIDGFLVSDNIEATSVKAYSMEFKNT---DH 317
Query: 112 CPLTIEYDFE 121
P+ +E+ +
Sbjct: 318 NPVKMEFKLK 327
>gi|187779536|ref|ZP_02996009.1| hypothetical protein CLOSPO_03132 [Clostridium sporogenes ATCC
15579]
gi|187773161|gb|EDU36963.1| hypothetical protein CLOSPO_03132 [Clostridium sporogenes ATCC
15579]
Length = 352
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 42/130 (32%), Gaps = 12/130 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNR-KINSIGD--------TDDFWQKMDPDGL 51
+ QQ +L+ + ++ K G ++ GD+N + D + +
Sbjct: 226 IRKQQLSFLRNYIIKEYKKGNYIIVGGDWNHLIPGTDPLIFKTTEKWPDWLQKIPNDFKP 285
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++ FL+ ++ ++S +D + + H
Sbjct: 286 KEFKWVADKNVPTTRTDATPYKKGENFTAVIDGFLVSDNIEVISVKAHSMDFKNT---DH 342
Query: 112 CPLTIEYDFE 121
P+ +++ +
Sbjct: 343 NPVNMKFKLK 352
>gi|88703392|ref|ZP_01101108.1| Exodeoxyribonuclease III [Congregibacter litoralis KT71]
gi|88702106|gb|EAQ99209.1| Exodeoxyribonuclease III [Congregibacter litoralis KT71]
Length = 266
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 33/135 (24%), Gaps = 23/135 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKM 46
E + + F+I D+N +I + + ++
Sbjct: 133 MELFYEHLRALKRKRRDFIICADWNTCHQNIDLRNWKPNQKNSGFLPEERAWLDRIYDEI 192
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+E + R ++ + +I S
Sbjct: 193 GFVDSFRVIDKEPDRYTWWSNRGQAWANNVGW--RLDYQMITPKLVPAVRAASIYT--DE 248
Query: 107 KLSTHCPLTIEYDFE 121
+ S H P +EY E
Sbjct: 249 RFSDHAPQVMEYALE 263
>gi|257059551|ref|YP_003137439.1| endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 8802]
gi|256589717|gb|ACV00604.1| Endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 8802]
Length = 1148
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 18/130 (13%)
Query: 6 GEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L W D ++I GD N T LI ++
Sbjct: 890 ANALVNWLATDPTNSGDSDYLIIGDLNSYAMEDPITAIKNAGY---TNLIEQFSGADAYS 946
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------------SKLST 110
V LD+ + + + + + ++ D+ ++ + S
Sbjct: 947 YVFDGQFGYLDHALSNSSLTSQVTGVAEWHINADEPNVFDYNEEFNPPSLYSVDPYRTSD 1006
Query: 111 HCPLTIEYDF 120
H P+ I +
Sbjct: 1007 HDPVIIGLNL 1016
>gi|218246518|ref|YP_002371889.1| Endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 8801]
gi|218166996|gb|ACK65733.1| Endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 8801]
Length = 1148
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 18/130 (13%)
Query: 6 GEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L W D ++I GD N T LI ++
Sbjct: 890 ANALVNWLATDPTNSGDSDYLIIGDLNSYAMEDPITAIKNAGY---TNLIEQFSGADAYS 946
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------------SKLST 110
V LD+ + + + + + ++ D+ ++ + S
Sbjct: 947 YVFDGQFGYLDHALSNSSLTSQVTGVAEWHINADEPNVFDYNEEFNPPSLYSVDPYRTSD 1006
Query: 111 HCPLTIEYDF 120
H P+ I +
Sbjct: 1007 HDPVIIGLNL 1016
>gi|76818418|ref|YP_336092.1| extracellular nuclease [Burkholderia pseudomallei 1710b]
gi|76582891|gb|ABA52365.1| Extracellular nuclease [Burkholderia pseudomallei 1710b]
Length = 514
Score = 51.8 bits (122), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 32/136 (23%), Gaps = 24/136 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIP---FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
S+ + W + TG P ++ GD N +
Sbjct: 356 SRAAAKIADWL-ARNPTGAPSEGVLLIGDLNSYTYEDPVRTLESRGYVNLVSSKV---GS 411
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLD 102
+ V LD+ + + ++ D+
Sbjct: 412 GAYSYVYNGEAGYLDHALATNALAWRVKAVHDWHINADEPIALQYTLAYKSAEQQRTYYA 471
Query: 103 TRRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 472 PDAYRSSDHDPVLIDI 487
>gi|317504627|ref|ZP_07962594.1| AP endonuclease domain protein [Prevotella salivae DSM 15606]
gi|315664248|gb|EFV03948.1| AP endonuclease domain protein [Prevotella salivae DSM 15606]
Length = 363
Score = 51.8 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 33/122 (27%), Gaps = 24/122 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ + ++ GDFN S +D C
Sbjct: 263 QADAVARYISNHLDKS--MIVCGDFNDTPISYARHTIAKNLID---------------CY 305
Query: 65 VIKRNKSSLDYF--VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
V N + Y + + + + + S H P+ ++
Sbjct: 306 VSTGNGPGVSYHAGGMYVRIDHIMCTKDWQPYACKVDHSIGE----SDHYPIVCWLK-KR 360
Query: 123 GN 124
GN
Sbjct: 361 GN 362
>gi|14861058|dbj|BAB62088.1| deoxyribonuclease I precursor [Rana catesbeiana]
Length = 353
Score = 51.8 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 4/120 (3%)
Query: 4 QQGEWLKK-WADQKIKT-GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L W D K + I GD+N + + ++ + L +
Sbjct: 161 REVDALFDVWEDAKQRLLMEDIFILGDYNAGCSYVKSAHWPTIRLRQEASLQWLIGDNAD 220
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPLTIEYD 119
T N V ++ ++ S +Y ++ T S H P+ +E
Sbjct: 221 TTVSTNTNCPYDRIVVGGSRLQDSVVPGSAKAFNYQEAYGLTYEETKAASDHYPVEVELR 280
>gi|126336177|ref|XP_001368612.1| PREDICTED: similar to DNase1-Like III protein [Monodelphis
domestica]
Length = 316
Score = 51.8 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 4/120 (3%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D ++ F+ GDFN + + ++ D + + E
Sbjct: 165 REIDELFDVYMDVKRQWKPENFIFMGDFNAGCSYVPKKSWKEIRLRMDPKFVWLIGDNED 224
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYD 119
T + + + + ++ +S SI + ++ T L S H P+ E
Sbjct: 225 TTVKGTTKCAYDRIVLQGQKINSSVVPDSASIFDFQKAYRMTEEEALGISDHFPVEFELQ 284
>gi|285017614|ref|YP_003375325.1| hypothetical protein XALc_0819 [Xanthomonas albilineans GPE PC73]
gi|283472832|emb|CBA15337.1| conserved hypothetical protein [Xanthomonas albilineans]
Length = 289
Score = 51.8 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 10/104 (9%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ +P V+ GDFN +S D + + + + D+
Sbjct: 194 LPANVPVVLTGDFNTVQDSPTYRTLTRTLTDARTQVTQPQGPEAT----------FHDFT 243
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++++ Y D + S H P+ E+ +
Sbjct: 244 GHPDRRIDWILTRGLHATRYATLDARPQGHWPSDHFPVIAEFAW 287
>gi|257141810|ref|ZP_05590072.1| extracellular nuclease, putative [Burkholderia thailandensis E264]
Length = 613
Score = 51.8 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 13/135 (9%), Positives = 29/135 (21%), Gaps = 22/135 (16%)
Query: 3 SQQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
S+ + W + ++ GD N +
Sbjct: 455 SRAAAKVADWLARNPTGAHSEGVLLIGDLNSYTYEDPVRTLESRGYVNLVSSKI---GAP 511
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDT 103
+ V LD+ + + ++ D+
Sbjct: 512 AYSYVYNGEAGYLDHALATNALAWRVKAVHDWHINADEPIALQYTLAYKTAEQQRTYYAP 571
Query: 104 RRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 572 DAYRSSDHDPVLIDI 586
>gi|167615248|ref|ZP_02383883.1| extracellular nuclease, putative [Burkholderia thailandensis Bt4]
Length = 622
Score = 51.8 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 13/135 (9%), Positives = 29/135 (21%), Gaps = 22/135 (16%)
Query: 3 SQQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
S+ + W + ++ GD N +
Sbjct: 464 SRAAAKVADWLARNPTGAHSEGVLLIGDLNSYTYEDPVRTLESRGYVNLVSSKI---GAP 520
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDT 103
+ V LD+ + + ++ D+
Sbjct: 521 AYSYVYNGEAGYLDHALATNALAWRVKAVHDWHINADEPIALQYTLAYKTAEQQRTYYAP 580
Query: 104 RRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 581 DAYRSSDHDPVLIDI 595
>gi|167577079|ref|ZP_02369953.1| extracellular nuclease, putative [Burkholderia thailandensis TXDOH]
Length = 613
Score = 51.8 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 13/135 (9%), Positives = 29/135 (21%), Gaps = 22/135 (16%)
Query: 3 SQQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
S+ + W + ++ GD N +
Sbjct: 455 SRAAAKVADWLARNPTGAHSEGVLLIGDLNSYTYEDPVRTLESRGYVNLVSSKI---GAP 511
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDT 103
+ V LD+ + + ++ D+
Sbjct: 512 AYSYVYNGEAGYLDHALATNALAWRVKAVHDWHINADEPIALQYTLAYKTAEQQRTYYAP 571
Query: 104 RRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 572 DAYRSSDHDPVLIDI 586
>gi|83718276|ref|YP_438732.1| extracellular nuclease [Burkholderia thailandensis E264]
gi|83652101|gb|ABC36165.1| extracellular nuclease, putative [Burkholderia thailandensis E264]
Length = 622
Score = 51.8 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 13/135 (9%), Positives = 29/135 (21%), Gaps = 22/135 (16%)
Query: 3 SQQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
S+ + W + ++ GD N +
Sbjct: 464 SRAAAKVADWLARNPTGAHSEGVLLIGDLNSYTYEDPVRTLESRGYVNLVSSKI---GAP 520
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDT 103
+ V LD+ + + ++ D+
Sbjct: 521 AYSYVYNGEAGYLDHALATNALAWRVKAVHDWHINADEPIALQYTLAYKTAEQQRTYYAP 580
Query: 104 RRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 581 DAYRSSDHDPVLIDI 595
>gi|218887544|ref|YP_002436865.1| exodeoxyribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218758498|gb|ACL09397.1| exodeoxyribonuclease III [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 259
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 13/127 (10%), Positives = 28/127 (22%), Gaps = 23/127 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDF------------------WQKMDPDGLLIRF 55
+ ++ P V+ GDFN I +
Sbjct: 136 AEDLRRHKPIVVCGDFNTAHRPIDLARPKDNEDISGFLPIERAWMDRFTAAGYVDTFRLV 195
Query: 56 PQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ + + ++ F + + S HCP+
Sbjct: 196 QGDTPHAYSWWSYKTRARERNVGW--RIDYFFVSEELRG--AVRDAWIDMHVMGSDHCPV 251
Query: 115 TIEYDFE 121
+ D +
Sbjct: 252 GLALDVD 258
>gi|134096002|ref|YP_001101077.1| DNase [Herminiimonas arsenicoxydans]
gi|133739905|emb|CAL62956.1| Putative endonuclease/exonuclease/phosphatase family protein
[Herminiimonas arsenicoxydans]
Length = 264
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 8/125 (6%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L + ++G P +IAGDFN N +++ + + +
Sbjct: 142 KRQTAALIEAVSASAESGAPIIIAGDFNDWGN--RLSEELRDTLGVTEVFDANLSRRGFG 199
Query: 63 CNVI--KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD----TRRSKLSTHCPLTI 116
+ + + FL + + + + KLS H P+
Sbjct: 200 TYLRQLSGRGTKIQPARTFPAAMPFLQLDRIYVRGFKVESAEVLHGAMWGKLSDHAPIVA 259
Query: 117 EYDFE 121
+
Sbjct: 260 NLQLK 264
>gi|297671005|ref|XP_002813639.1| PREDICTED: deoxyribonuclease gamma-like isoform 1 [Pongo abelii]
Length = 275
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 6/124 (4%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + + D + F+ GDFN + + ++ D + ++E
Sbjct: 133 REIDELVEVYMDVKHRWKAENFIFMGDFNAGCSYVPKKAWKNIRLRTDPRFVWLIGDQED 192
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYD 119
T N + + ++ + ++ S S+ + ++ T L S H P+ E+
Sbjct: 193 TTVKKSTNCAYDRIVLRGQEIVSSVVPKSNSVFDFQKAYKLTEEEALDVSDHFPV--EFK 250
Query: 120 FEKG 123
+
Sbjct: 251 LQSS 254
>gi|281348003|gb|EFB23587.1| hypothetical protein PANDA_001388 [Ailuropoda melanoleuca]
Length = 259
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 6/124 (4%)
Query: 4 QQGEWLKK--WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L W ++ F+ GDFN + + ++ D + ++E
Sbjct: 118 KEIDELADVYWDVKRRWKTENFIFMGDFNAGCSYVPKKAWKNIRLRTDPEFVWLIGDQED 177
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYD 119
T + + + ++ + ++ S S ++ ++ T L S H P+ E+
Sbjct: 178 TTVKRSTSCAYDRIVLRGQEIISSIVPKSNSTFNFQKAYELTEEEALDVSDHFPV--EFK 235
Query: 120 FEKG 123
+
Sbjct: 236 LQSS 239
>gi|88856446|ref|ZP_01131104.1| exodeoxyribonuclease III [marine actinobacterium PHSC20C1]
gi|88814313|gb|EAR24177.1| exodeoxyribonuclease III [marine actinobacterium PHSC20C1]
Length = 286
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 13/148 (8%), Positives = 31/148 (20%), Gaps = 35/148 (23%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------MDPDGLLI------- 53
E + + +I GD N + + + ++
Sbjct: 138 EAMLVRLPELAAHSDHALIVGDLNVGHRELDIKNWRGNRKKAGFLLEERAYFDRIFGANG 197
Query: 54 ----------------------RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF 91
+ +R ++ D +
Sbjct: 198 ETVECVDGTTGPGLGWVDVGRQFAGEIDGPYTWWSQRGQAFDTDTGWRIDYHVATPALAA 257
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
S+ Y + S H P+ ++Y
Sbjct: 258 SVADYRIDKAGAWDERWSDHAPVVVDYS 285
>gi|291393905|ref|XP_002713317.1| PREDICTED: deoxyribonuclease I-like 3 [Oryctolagus cuniculus]
Length = 307
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 6/124 (4%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D ++ F+ GDFN + + ++ D + ++E
Sbjct: 165 KEIDELVDVYMDVKRRWNAENFIFMGDFNAGCSYVPKKAWKNIRLRTDPRFVWLIGDEED 224
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYD 119
T + + + +D ++ +S + + ++ T L S H P+ E+
Sbjct: 225 TTVKKSTSCAYDRIVLRGQDIIRSVVPDSNGVFDFRKAYKLTEEEALDVSDHFPV--EFK 282
Query: 120 FEKG 123
+
Sbjct: 283 LQSS 286
>gi|91786127|ref|YP_547079.1| exodeoxyribonuclease III (xth) [Polaromonas sp. JS666]
gi|91695352|gb|ABE42181.1| exodeoxyribonuclease III (xth) [Polaromonas sp. JS666]
Length = 349
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 41 DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
M ++ + R ++ L +F+ ++ +
Sbjct: 272 PLGGGMVDVYRKLQPTTTDAAYTWWSNRGQAYAKNVGW--RLDYHLATPAFAALARSEHI 329
Query: 101 LDTRRSKLSTHCPLTIEYDFE 121
R + S H P+T++YD+
Sbjct: 330 Y--RAERFSDHAPITVDYDWS 348
>gi|77736625|ref|NP_001029987.1| deoxyribonuclease gamma [Gallus gallus]
gi|73532981|gb|AAZ76744.1| DNase-gamma [Gallus gallus]
Length = 307
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 40/122 (32%), Gaps = 6/122 (4%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D ++ FV GDFN + + ++ +
Sbjct: 161 REIDELYDVYLDIKQHWDTENFVFMGDFNAGCSYVPRKHWKNIRLRTSSEFAWLIGDTND 220
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYD 119
T + V ++ +S +I + + + L S H P+ E++
Sbjct: 221 TTVRRSTSCPYDRIVVSGEQLSQAVVPHSATIFDFQTAFQMSEEQALGVSDHFPV--EFE 278
Query: 120 FE 121
+
Sbjct: 279 LK 280
>gi|227541681|ref|ZP_03971730.1| endonuclease/exonuclease/phosphatase [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227182649|gb|EEI63621.1| endonuclease/exonuclease/phosphatase [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 880
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 20/135 (14%)
Query: 1 MLSQQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+ ++Q L K + +P + GD N + ++ G
Sbjct: 677 LRAEQARALTKAIAAHEEWNDMPVFVVGDLNSYTKED-----TMKVLEDAGYTNIAATYD 731
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS------------- 106
SLD+ + ++D ++ D+S
Sbjct: 732 SGHSYQFAGRIGSLDHAFGNAAAMKLVVDADVWDINSDESIAFEYSRENYNIAPLVDDSV 791
Query: 107 -KLSTHCPLTIEYDF 120
+ S H P+ + ++
Sbjct: 792 FRSSDHDPIKVAFNL 806
>gi|227487001|ref|ZP_03917317.1| possible exodeoxyribonuclease III [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227093075|gb|EEI28387.1| possible exodeoxyribonuclease III [Corynebacterium glucuronolyticum
ATCC 51867]
Length = 294
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 18/70 (25%)
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R E R K+ D + S D ++ S
Sbjct: 224 DVARRLHPEDAPYTWWTYRGKAFDTNAGWRIDVQAATKAMMERAESTRVDRADEWGTRWS 283
Query: 110 THCPLTIEYD 119
H PL + Y
Sbjct: 284 DHAPLVVTYR 293
>gi|227487151|ref|ZP_03917467.1| endonuclease/exonuclease/phosphatase [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227092809|gb|EEI28121.1| endonuclease/exonuclease/phosphatase [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 880
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 20/135 (14%)
Query: 1 MLSQQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+ ++Q L K + +P + GD N + ++ G
Sbjct: 677 LRAEQARALTKAIAAHEEWNDMPVFVVGDLNSYTKED-----TMKVLEDAGYTNIAATYD 731
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS------------- 106
SLD+ + ++D ++ D+S
Sbjct: 732 SGHSYQFAGRIGSLDHAFGNAAAMKLVVDADVWDINSDESIAFEYSRENYNIAPLVDDSV 791
Query: 107 -KLSTHCPLTIEYDF 120
+ S H P+ + ++
Sbjct: 792 FRSSDHDPIKVAFNL 806
>gi|149199457|ref|ZP_01876492.1| endonuclease/exonuclease/phosphatase family protein [Lentisphaera
araneosa HTCC2155]
gi|149137392|gb|EDM25810.1| endonuclease/exonuclease/phosphatase family protein [Lentisphaera
araneosa HTCC2155]
Length = 590
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 31/126 (24%), Gaps = 13/126 (10%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD-------PDGLLIRFPQE 58
E + K + F++ GDFN S E
Sbjct: 180 AEMIMKHLHGQKLKDA-FIVMGDFNAAEESKAIAQVKGTGAFVNAVYPKAVDPFRVLNPE 238
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ + + +++ + + S H P+T
Sbjct: 239 AKNVG-TYHGFSG----KDSGAKIDYIFVPKNAQVLAAEILKTNHNGRYPSDHFPVTARV 293
Query: 119 DFEKGN 124
F++ +
Sbjct: 294 SFKQTS 299
>gi|319790980|ref|YP_004152620.1| exodeoxyribonuclease iii xth [Variovorax paradoxus EPS]
gi|315593443|gb|ADU34509.1| exodeoxyribonuclease III Xth [Variovorax paradoxus EPS]
Length = 267
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 25/127 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-----------------------GLLI 53
+K FV+ GD N I + + + +
Sbjct: 141 LKKEREFVLCGDINIAHQQIDLKNWRSNQKNSGFLPEERAWMTKLLDAGAEGAGLVDVYR 200
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
E N+ + L + ++ + T K S H P
Sbjct: 201 MLKPETTDEAYTWWSNRGQAYANNVGWRLDYHLATPKTAALARTEQIFKT--IKFSDHAP 258
Query: 114 LTIEYDF 120
+T++YDF
Sbjct: 259 ITVDYDF 265
>gi|111225231|ref|YP_716025.1| hypothetical protein FRAAL5881 [Frankia alni ACN14a]
gi|111152763|emb|CAJ64506.1| hypothetical protein; putative membrane protein [Frankia alni
ACN14a]
Length = 356
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L+ + +P V+AGDFN + + ++
Sbjct: 254 RTQLTALRH---EAQHATLPVVMAGDFNATRDHRPLRRLVSAGVRDAHDVV--------G 302
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + L +F++ + S H P+ +
Sbjct: 303 GGWEPTWNARSVVLPPVLRIDHVLTSPAFAVTGFQV-----GHDFGSDHLPVIADLAM 355
>gi|94496587|ref|ZP_01303163.1| exonuclease III [Sphingomonas sp. SKA58]
gi|94423947|gb|EAT08972.1| exonuclease III [Sphingomonas sp. SKA58]
Length = 265
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 32/135 (23%), Gaps = 23/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
+ + +W+ P ++ GDFN D
Sbjct: 133 QRMIEWSAAL--EDKPTILTGDFNIAPLECDVWSHRQLLDVVSHTPIECEILGRLQASND 190
Query: 48 PDGLLIRFPQEKES-TCNVIKRNKSSL-DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ F R K D+ D + V + +
Sbjct: 191 WVDIGRHFHPAPARLYTWWSYRAKDWAASDRGRRLDHMWMTRDVAEKAVGHRVIEPARSW 250
Query: 106 SKLSTHCPLTIEYDF 120
K S H P+ ++ F
Sbjct: 251 IKPSDHIPIITDFAF 265
>gi|146343957|ref|YP_001201813.1| putative exported DNAse, extended at the C-terminus relative to
other homologues [Pseudomonas fluorescens SBW25]
gi|146187769|emb|CAM96097.1| putative exported DNAse, extended at the C-terminus relative to
other homologues [Pseudomonas fluorescens SBW25]
Length = 376
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 8/109 (7%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+W +Q G P ++ GDFN + + + + N R
Sbjct: 171 EWLEQVY-PGEPIMLMGDFNMPPSDPAFESLRARAIPMVTDGA------STLSNTSGRFA 223
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-STHCPLTIEY 118
+ D ++ ++ + + S H P+ +
Sbjct: 224 NLYDNVFANQSARSMMSGVGIVNYPAMLKVSHEDGRRAVSDHAPVFFQL 272
>gi|85710025|ref|ZP_01041090.1| exonuclease III [Erythrobacter sp. NAP1]
gi|85688735|gb|EAQ28739.1| exonuclease III [Erythrobacter sp. NAP1]
Length = 262
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 35/134 (26%), Gaps = 26/134 (19%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGLL 52
+ KWAD+ P +I GDFN + Q+
Sbjct: 132 RMTKWADKV---DKPTLIVGDFNIAPLESDVWSHKQLLKVVSHTPIEVETLQRFKDAHGW 188
Query: 53 IRFPQE-----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRR 105
+ +E + R+ R + ++ +
Sbjct: 189 VDIGREHIRDPERYYSWWSYRSPDWRKN-DRGRRLDHMWASPELAAQAKAHRLLEEARSW 247
Query: 106 SKLSTHCPLTIEYD 119
K S H PL E+D
Sbjct: 248 EKPSDHIPLVTEFD 261
>gi|90022485|ref|YP_528312.1| extracellular nuclease-like protein [Saccharophagus degradans 2-40]
gi|89952085|gb|ABD82100.1| Endonuclease/exonuclease/phosphatase [Saccharophagus degradans
2-40]
Length = 945
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 37/137 (27%), Gaps = 24/137 (17%)
Query: 4 QQGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + W +I GD N + + + +
Sbjct: 717 EAAQAVIAWLQTSPTGLVDSDQIILGDLNAYAAEEPIQYLLAEGFNNVES-------EHA 769
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------------S 106
V +LDY ++ L V+ D++D +
Sbjct: 770 YSYVFDGQVGTLDYLLVSDSLFEKLTAAQVWNVNADEADAIDYNLDYGRSASYFDASVAA 829
Query: 107 KLSTHCPLTIEYDFEKG 123
+ S H P+ + ++ K
Sbjct: 830 RNSDHDPVLVGFELTKA 846
>gi|307297053|ref|ZP_07576869.1| exodeoxyribonuclease III Xth [Sphingobium chlorophenolicum L-1]
gi|306877579|gb|EFN08807.1| exodeoxyribonuclease III Xth [Sphingobium chlorophenolicum L-1]
Length = 265
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 30/123 (24%), Gaps = 21/123 (17%)
Query: 19 TGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDGLLIRFPQEKES- 61
P ++ GDFN + + + +
Sbjct: 143 EDKPTILTGDFNIAPMECDVWSHKQLLNVVSHTPIECEILARLQASNDWVDIGRHFYPAP 202
Query: 62 ---TCNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
R K + D+ D + +S+ + K S H P+ E
Sbjct: 203 QRLYTWWSYRAKDWAESDRGRRLDHMWMTRDVAGKAISHRVVEPARNWGKPSDHIPIITE 262
Query: 118 YDF 120
+ F
Sbjct: 263 FAF 265
>gi|46135919|ref|XP_389651.1| hypothetical protein FG09475.1 [Gibberella zeae PH-1]
Length = 602
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 34/119 (28%), Gaps = 7/119 (5%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q E + Q +K ++AGDFN + D E
Sbjct: 488 KQSEVTADFVAQILKKDKKAHVIVAGDFNEFADVEPIDTFVKTSGLVDIDDAAKIPMTER 547
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N +LD+ I ++ + ++S H P +D
Sbjct: 548 YTYLFDSNCQALDHMFISKEL-----RKGIKYEHMHINTWQDTAGEVSDHDPSVALFDL 601
>gi|269123835|ref|YP_003306412.1| Endonuclease/exonuclease/phosphatase [Streptobacillus moniliformis
DSM 12112]
gi|268315161|gb|ACZ01535.1| Endonuclease/exonuclease/phosphatase [Streptobacillus moniliformis
DSM 12112]
Length = 597
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 39/121 (32%), Gaps = 9/121 (7%)
Query: 3 SQQGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++Q ++ + + + V+ GD N S + ++ + +
Sbjct: 484 NKQATYINNFVKEILSKDKDASIVVMGDINDYDFSTTSKNIRGNELIDVMGELAPN---K 540
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V LD I+++ + + I + + S H P+ I++
Sbjct: 541 RYSYVYGGMSQVLDNMFINKEYSGKVNVDVIRI----NPEFTKAQGAFSDHDPVFIQFKI 596
Query: 121 E 121
+
Sbjct: 597 K 597
>gi|75910924|ref|YP_325220.1| endonuclease/exonuclease/phosphatase [Anabaena variabilis ATCC 29413]
gi|75704649|gb|ABA24325.1| Endonuclease/exonuclease/phosphatase [Anabaena variabilis ATCC 29413]
Length = 2346
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 15/141 (10%), Positives = 36/141 (25%), Gaps = 26/141 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L W T ++I GD N + +
Sbjct: 1925 RASQDLAAWLATNPTGTTDTDYLILGDLNAYAQEDPIRALENAGYNNLL-------PNTT 1977
Query: 62 TCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDTR 104
V +LD+ + + + + +++ Y+ S
Sbjct: 1978 YSYVFDGQWGALDHALANASLTAQLSGAVKWHINADEPNVLDYNTNFKSVGQQTSLYSPD 2037
Query: 105 RSKLSTHCPLTIEYDFEKGNV 125
+ S H P+ + + +
Sbjct: 2038 AFRSSDHDPVIVGLNLNTAPI 2058
>gi|17227772|ref|NP_484320.1| hypothetical protein alr0276 [Nostoc sp. PCC 7120]
gi|17135254|dbj|BAB77800.1| alr0276 [Nostoc sp. PCC 7120]
Length = 2348
Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/141 (11%), Positives = 37/141 (26%), Gaps = 26/141 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L W T ++I GD N + +
Sbjct: 1927 RASQDLAAWLATNPTGTTDTDYLILGDLNAYAQEDPIRALENAGYNNLL-------PNTT 1979
Query: 62 TCNVIKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQ---------SDLDTR 104
V +LD+ + + K + + +++ Y+ S
Sbjct: 1980 YSYVFDGQWGALDHALANASLASQVSTAVKWHINADEPNVLDYNTNFKSVGQQTSLYSPD 2039
Query: 105 RSKLSTHCPLTIEYDFEKGNV 125
+ S H P+ + + +
Sbjct: 2040 AFRSSDHDPVIVGLNLNTAPI 2060
>gi|310794858|gb|EFQ30319.1| endonuclease/Exonuclease/phosphatase [Glomerella graminicola
M1.001]
Length = 603
Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 5/118 (4%)
Query: 4 QQGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + + + + + +GDFN + D + +E
Sbjct: 487 EQAQLAGSFIAEILAADPDASVISSGDFNEFAFVEPLKVFAAKSGLFDLDEVVGTPAEER 546
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N LD+ + I + + +S H P +
Sbjct: 547 YTYAYDMNAQELDHIFVSPALAARNGTAYEHIH---VNSWELYDELVSDHDPSVARLN 601
>gi|148656942|ref|YP_001277147.1| endonuclease/exonuclease/phosphatase [Roseiflexus sp. RS-1]
gi|148569052|gb|ABQ91197.1| Endonuclease/exonuclease/phosphatase [Roseiflexus sp. RS-1]
Length = 1641
Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 33/140 (23%), Gaps = 22/140 (15%)
Query: 1 MLSQQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
+ + L W D +I GD N
Sbjct: 714 VRRNAAQELVTWLATDPTGTGDPDILIIGDLNSYAQEDPIDVLRAAGYTDLART---FVG 770
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDL 101
+ + V LDY + + + +++ Y+ S
Sbjct: 771 ESAYSYVFNGQWGYLDYALASPPALAKVSGVSEYHINADEPNVLDYNLNFKSVGQQTSLF 830
Query: 102 DTRRSKLSTHCPLTIEYDFE 121
+ + S H P+ + +
Sbjct: 831 APDQYRTSDHDPILVGLNLN 850
>gi|196005147|ref|XP_002112440.1| hypothetical protein TRIADDRAFT_25141 [Trichoplax adhaerens]
gi|190584481|gb|EDV24550.1| hypothetical protein TRIADDRAFT_25141 [Trichoplax adhaerens]
Length = 267
Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 5/126 (3%)
Query: 1 MLSQQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+ +Q +L Q I IP +I GDFN N+ T+ + E+
Sbjct: 142 IRKEQSAFLLNKVGQLINFEYIPIIICGDFNTDPNTPTYTNFANFQPCHLKSAYALNGEE 201
Query: 60 ESTCNVIKRNKSS----LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
R K +DY + + +S + S H L
Sbjct: 202 PKFTTWKFRPKCQVCHTIDYIWFSDKFLKRVQFLAIPTMSEIGPNALPAEHYPSDHMSLV 261
Query: 116 IEYDFE 121
E+ +
Sbjct: 262 AEFKYN 267
>gi|325917542|ref|ZP_08179745.1| exodeoxyribonuclease III [Xanthomonas vesicatoria ATCC 35937]
gi|325536258|gb|EGD08051.1| exodeoxyribonuclease III [Xanthomonas vesicatoria ATCC 35937]
Length = 266
Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 38/142 (26%), Gaps = 33/142 (23%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
EWL+ D+ + +G +V+ GD+N ++ + + +
Sbjct: 127 MEWLRPILDEWLASGRQYVLCGDWNIVRTALDIKNWKSNQKNSGCLPPERDWLNGLCADT 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ E R + + L+
Sbjct: 187 ASDASPADGRGWVDSYRVLHPQGEDYTWWSNRGAARANNVGW--RIDYQLVTPGLR--DA 242
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
Q+ R + S H P ++Y
Sbjct: 243 LQACTIYREQRFSDHAPYIVDY 264
>gi|296532202|ref|ZP_06894954.1| exodeoxyribonuclease III [Roseomonas cervicalis ATCC 49957]
gi|296267473|gb|EFH13346.1| exodeoxyribonuclease III [Roseomonas cervicalis ATCC 49957]
Length = 268
Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 12/124 (9%), Positives = 25/124 (20%), Gaps = 23/124 (18%)
Query: 19 TGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDGLLIRFPQE 58
V+ GD N D + P
Sbjct: 146 PAKRAVMVGDLNIAPLECDVWSHRQLLDVVSHTPVEVAALTAWQQAGAWHDAIRHFVPPP 205
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLSTHCPLTI 116
++ R + R + + + + ++ S H P+ +
Sbjct: 206 EKVYTWWSYRARDWE-ASDRGRRLDHVWVSQDLAGSLRRHHIHKAARGWTQASDHVPVLV 264
Query: 117 EYDF 120
E
Sbjct: 265 ELAL 268
>gi|295687845|ref|YP_003591538.1| endonuclease/exonuclease/phosphatase [Caulobacter segnis ATCC
21756]
gi|295429748|gb|ADG08920.1| Endonuclease/exonuclease/phosphatase [Caulobacter segnis ATCC
21756]
Length = 259
Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 14/119 (11%)
Query: 3 SQQGEWLK--KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q L W + P V+ GDFN +
Sbjct: 139 KRQAAALLGPDWMGD-DRWVAPGVVLGDFNATP-YSATYRMLRTALRDAQAPSPAWPRPA 196
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +D+ + + + + S D R S H PL ++ +
Sbjct: 197 TATFPSSFPFMRIDHVFLTKGLETRGVR----------SPYDARARIASDHLPLVVDLE 245
>gi|134292654|ref|YP_001116390.1| endonuclease/exonuclease/phosphatase [Burkholderia vietnamiensis
G4]
gi|134135811|gb|ABO56925.1| Endonuclease/exonuclease/phosphatase [Burkholderia vietnamiensis
G4]
Length = 603
Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 32/137 (23%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ L W G ++ GDFN + + L+ +
Sbjct: 466 RAAVKLADWLAGAPTGVAGQGTLLIGDFNSYTHEDPIRMLESRGY---RNLVSRWIGANA 522
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTR 104
V LD+ + + ++ D+
Sbjct: 523 YSYVYNGEAGYLDHALASLPLAAHVKAVHEWHINADEPLALQYTLAYKSADQQKTYYAPD 582
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ I+
Sbjct: 583 AYRSSDHDPVLIDIALP 599
>gi|302868995|ref|YP_003837632.1| endonuclease/exonuclease/phosphatase [Micromonospora aurantiaca
ATCC 27029]
gi|315504534|ref|YP_004083421.1| endonuclease/exonuclease/phosphatase [Micromonospora sp. L5]
gi|302571854|gb|ADL48056.1| Endonuclease/exonuclease/phosphatase [Micromonospora aurantiaca
ATCC 27029]
gi|315411153|gb|ADU09270.1| Endonuclease/exonuclease/phosphatase [Micromonospora sp. L5]
Length = 232
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 17/117 (14%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q K+ + + +P V D N + + L ++ +
Sbjct: 131 QAAAFKR---ELAASTLPVVAGADINEGP-DGPAWQTLAEGLTDTALAADR-ADRHTFSC 185
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
R +D ++V YD D R + S H P+ ++
Sbjct: 186 ADPRR-----------RIDALFVDPRITVVDYDVVDTPAAR-RASDHFPVLVDLLLP 230
>gi|121602111|ref|YP_988433.1| exodeoxyribonuclease III [Bartonella bacilliformis KC583]
gi|120614288|gb|ABM44889.1| exodeoxyribonuclease III [Bartonella bacilliformis KC583]
Length = 271
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 27/132 (20%), Gaps = 23/132 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIR-- 54
G+ ++ GD N G +
Sbjct: 139 IRADQGDGLSSLLMGDLNIAPLEDDVWSHKQLLNVVSHTPIETERLKALCHEGGWVDLMR 198
Query: 55 --FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLST 110
FP + R + R + + SK S
Sbjct: 199 MKFPVPIKLYTWWSYRARDWAL-ADRGRRLDHIWSSPDLAPFVEDLSIFREARGWSKPSD 257
Query: 111 HCPLTIEYDFEK 122
H P+ ++F +
Sbjct: 258 HVPVQSVFNFSR 269
>gi|302690596|ref|XP_003034977.1| hypothetical protein SCHCODRAFT_43911 [Schizophyllum commune H4-8]
gi|300108673|gb|EFJ00075.1| hypothetical protein SCHCODRAFT_43911 [Schizophyllum commune H4-8]
Length = 261
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/126 (10%), Positives = 23/126 (18%), Gaps = 31/126 (24%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL------------------------- 51
+ P + GD N +I + G
Sbjct: 139 LDKKKPVIWTGDLNVAPTAIDLANPKTNWNKTPGYTEAETTAFKNILTPPSNAPEDSPRF 198
Query: 52 ---LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + R + D + + D
Sbjct: 199 IDVWRHLHPDTQHYTYFSYRFRCREKNLGWRLDMFVLSERLLEKVKMCEIRDEIYG---A 255
Query: 109 STHCPL 114
S HCP+
Sbjct: 256 SDHCPV 261
>gi|282880129|ref|ZP_06288849.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
timonensis CRIS 5C-B1]
gi|281306002|gb|EFA98042.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
timonensis CRIS 5C-B1]
Length = 311
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 38/144 (26%), Gaps = 29/144 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + K + P ++ GDFN D+ ++ G+L +
Sbjct: 167 REAAKLVIKKIKEIAGNNAPVILTGDFNV-----DQHDEIYKIFSESGILKDSYVAAKHR 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------------- 107
+ + + + N F + +Y +
Sbjct: 222 FAENGTFQDFDSSMKSESRIDHIFVSNKFEVNNYAIHTDAYWTANEKMPKLKSGNAPKEL 281
Query: 108 ---------LSTHCPLTIEYDFEK 122
S H P+ + +EK
Sbjct: 282 EFQQYTHRLPSDHYPVLAKIRYEK 305
>gi|260428526|ref|ZP_05782505.1| extracellular nuclease [Citreicella sp. SE45]
gi|260423018|gb|EEX16269.1| extracellular nuclease [Citreicella sp. SE45]
Length = 1183
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 16/130 (12%)
Query: 6 GEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L +W G V+ GD N L+ + ++E+
Sbjct: 1050 AVELAEWIGTGYNGGGVSNVVMLGDMNSYAEEDPVQY-LDDDAGFTDLIDAYIGQEEAYS 1108
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS-------------KLST 110
V + +LD +D F+ + ++ D+ DL + S
Sbjct: 1109 YVFDGQQGTLDQGFVDDMLAGFVTGVTEWHINADEPDLLSYDESFVESAFYDAGVFGSSD 1168
Query: 111 HCPLTIEYDF 120
H PL + DF
Sbjct: 1169 HDPLIVGLDF 1178
>gi|253700139|ref|YP_003021328.1| endonuclease/exonuclease/phosphatase [Geobacter sp. M21]
gi|251774989|gb|ACT17570.1| Endonuclease/exonuclease/phosphatase [Geobacter sp. M21]
Length = 246
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 30/119 (25%), Gaps = 16/119 (13%)
Query: 5 QGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + +W + P ++ GDFN S + + +
Sbjct: 142 QARAVTSHEWLG-HPECLPPAILCGDFNALFGSS-VYRLLTRHLHDVQ--RKVKGRLPRG 197
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + ++ + S R S H PL + +
Sbjct: 198 TWP---------AQLPFMRIDHLFVTHNLKVRSVSVPRTPLTRV-ASDHLPLVVTLELP 246
>gi|116748060|ref|YP_844747.1| endonuclease/exonuclease/phosphatase [Syntrophobacter fumaroxidans
MPOB]
gi|116697124|gb|ABK16312.1| Endonuclease/exonuclease/phosphatase [Syntrophobacter fumaroxidans
MPOB]
Length = 291
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 26/116 (22%), Gaps = 10/116 (8%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E + +WA ++ GDFN S + + +++
Sbjct: 185 QAERVAEWA---CGRDGSCILMGDFNDVPGSPA-HRLLTDVLQDCWEALGRSEDESGMTY 240
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
L ++ S H P + +
Sbjct: 241 HK------FTGIPQIARMDWVLASRDMRVLDQVVVRDQESGRYPSDHFPCFADVKW 290
>gi|332883625|gb|EGK03906.1| hypothetical protein HMPREF9456_01447 [Dysgonomonas mossii DSM
22836]
Length = 285
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 1/108 (0%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+++ G+P V+ GDFN S + L + K S + N L
Sbjct: 179 AEELGKGLPIVLTGDFNDTPQSEAIKNITDASKTNHLLDSKTIALKTSGTDWTFHNFGRL 238
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + Y + +S H + + E
Sbjct: 239 AESERPL-IDYIFVSKQIKVQDYAVLPDTLNGTFVSDHKAVLSKLIIE 285
>gi|294650031|ref|ZP_06727419.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
gi|292824124|gb|EFF82939.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
Length = 822
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/145 (11%), Positives = 39/145 (26%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ E L +WA + ++ GD N Q +++
Sbjct: 639 KAVEQLIQWAAKNPTQVETPNILLLGDMNSYAKEDPILALEKANYKVLLNDKTIGQGEQA 698
Query: 62 TCNVI--------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD------------- 100
V +LD+ + D + + + ++ D+
Sbjct: 699 YSYVFGVSSNAEGYGGAGNLDHAIADSNLYSKVKKAFVWHINADEPTVLDYNEEYKTDEQ 758
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D +
Sbjct: 759 KALFFAEDPYRSSDHDPVIVDIDLQ 783
>gi|288920362|ref|ZP_06414673.1| Endonuclease/exonuclease/phosphatase [Frankia sp. EUN1f]
gi|288348239|gb|EFC82505.1| Endonuclease/exonuclease/phosphatase [Frankia sp. EUN1f]
Length = 484
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 36/125 (28%), Gaps = 20/125 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ LK + D T + GD+N +++ F +
Sbjct: 201 QALKAYLDTTYPT-QNVFVIGDWNDDVDTS-------ITSGNASPYANFVNDTARYTFPT 252
Query: 67 K-----------RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ +D+ + + + + S Q+ + + S H P+
Sbjct: 253 RALSLAGVASTASYSDFIDHQLTTNEVQAKYVTGSAKAFQ-PQAYVSNYATTTSDHYPVL 311
Query: 116 IEYDF 120
YD+
Sbjct: 312 ARYDY 316
>gi|196230561|ref|ZP_03129423.1| Endonuclease/exonuclease/phosphatase [Chthoniobacter flavus
Ellin428]
gi|196225491|gb|EDY19999.1| Endonuclease/exonuclease/phosphatase [Chthoniobacter flavus
Ellin428]
Length = 303
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 5/120 (4%)
Query: 1 MLSQQGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
+ + L+K D+ + + V GDFN N + P + ++
Sbjct: 181 VRRNEASLLRKHLDEILVADPNVRLVCFGDFNDLKNEPAYHEVAGVH-GPTYMTALPAKD 239
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ K++ Y ID + ++ S S + S H P+
Sbjct: 240 ELGDTWTEY-WKAADLYSRIDYIFVSPVLHREISPGSPRV-YRSAYWNDASDHRPVYATI 297
>gi|288801368|ref|ZP_06406822.1| endonuclease/exonuclease/phosphatase family protein [Prevotella sp.
oral taxon 299 str. F0039]
gi|288331751|gb|EFC70235.1| endonuclease/exonuclease/phosphatase family protein [Prevotella sp.
oral taxon 299 str. F0039]
Length = 310
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 13/139 (9%), Positives = 32/139 (23%), Gaps = 19/139 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL----IRFPQE 58
+ + + + + P ++ GDFN + D
Sbjct: 171 REAAKLVIRKIKEIAGQNAPVILTGDFNVDQKDETYDLFVNSGLLNDSYTIAKNRFAENG 230
Query: 59 KESTCNVIKRNKSSLDYFVIDRDN---------------KNFLIDNSFSIVSYDQSDLDT 103
+ + + S +D+ + + +
Sbjct: 231 TFNDFDSDTKTDSRIDHIFLTKPFEVQRYGVLTNSYWTEDKTSEARKGKDAPQQINLKHF 290
Query: 104 RRSKLSTHCPLTIEYDFEK 122
R S H P+ + + K
Sbjct: 291 TRRNPSDHYPVFAKIKWTK 309
>gi|328954136|ref|YP_004371470.1| Endonuclease/exonuclease/phosphatase [Desulfobacca acetoxidans DSM
11109]
gi|328454460|gb|AEB10289.1| Endonuclease/exonuclease/phosphatase [Desulfobacca acetoxidans DSM
11109]
Length = 253
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 10/121 (8%)
Query: 2 LSQQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
L++Q L+++ Q P ++AGDFN S +
Sbjct: 141 LARQKAATMLREFFLQL---NQPAILAGDFNDHPQSSVHRVLARGDSPFRDSWEVLGHFE 197
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
E + D LI F + + + + + S H P +E +
Sbjct: 198 EGVS-----TQHKFDGEFFGGRIDWILITEPFRLKAAEIITYNQAKQYPSDHFPYYVEVN 252
Query: 120 F 120
+
Sbjct: 253 Y 253
>gi|39940404|ref|XP_359739.1| hypothetical protein MGG_05038 [Magnaporthe oryzae 70-15]
gi|145010717|gb|EDJ95373.1| hypothetical protein MGG_05038 [Magnaporthe oryzae 70-15]
Length = 307
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 12/103 (11%), Positives = 27/103 (26%), Gaps = 6/103 (5%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P + GDFN + L + + + + +
Sbjct: 206 PVSLTGDFNSAPYADAFKTLADTGFMKGELYDLATPAQHAGPYTT-TYTTFREGAG-ESR 263
Query: 82 NKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + V Y+ D ++S H P+ +
Sbjct: 264 IDFIWLGAAQNYPYSVVKYEIWDHTVDGMRVSDHRPVVGDVIL 306
>gi|289621687|emb|CBI51598.1| unnamed protein product [Sordaria macrospora]
Length = 289
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 2/111 (1%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST-CNVIKRN 69
+W + P V+ GD N + FP E + + +
Sbjct: 178 EWRQTNRDSDPPLVLGGDLNSTPTDLAYKTLTSSDSGLQDASAVFPDELKYGNRKITYTS 237
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYD 119
D D +F ++ + S+ LS H P+ ++ +
Sbjct: 238 FGEPDEKAKTIDFLFVQRPPTFKLMLFGILSNKFDDGVFLSDHRPVFLDVE 288
>gi|319785778|ref|YP_004145253.1| exodeoxyribonuclease III Xth [Pseudoxanthomonas suwonensis 11-1]
gi|317464290|gb|ADV26022.1| exodeoxyribonuclease III Xth [Pseudoxanthomonas suwonensis 11-1]
Length = 270
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 37/144 (25%), Gaps = 34/144 (23%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
EWLK D+ + +G +V+ GD+N + + +
Sbjct: 127 MEWLKPVLDEWLASGREYVLCGDWNIVRCRKDIRNWTSNQKNSGCLPPERAWLNGMIGPD 186
Query: 50 --------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS 95
+ E R + + D + +
Sbjct: 187 EGSDGTPPRPGGWVDAYRALHPQGEDYTWWSNRGAARANNVGWRIDYQFVTPGLGSRLRG 246
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYD 119
R + S H P T++Y+
Sbjct: 247 CSI----YREQRFSDHAPFTVDYE 266
>gi|3236320|gb|AAC23652.1| DNase gamma [Homo sapiens]
Length = 305
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ F+ GDFN + + ++ D + ++E T N +
Sbjct: 176 KHRWKAENFIFMGDFNAGCSYVPKKAWKNIRLRTDPRFVWLIGDQEDTTVKKSTNCAYDR 235
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDFEKG 123
+ ++ + ++ S S+ + ++ T L S H P+ E+ +
Sbjct: 236 IVLRGQEIVSSVVPKSNSVFDFQKAYKLTEEEALDVSDHFPV--EFKLQSS 284
>gi|88799886|ref|ZP_01115458.1| predicted extracellular nuclease [Reinekea sp. MED297]
gi|88777317|gb|EAR08520.1| predicted extracellular nuclease [Reinekea sp. MED297]
Length = 851
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 33/124 (26%), Gaps = 24/124 (19%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+I GD N T + Q ++ V +LD+ +
Sbjct: 655 ETDHVMILGDLNAYSQEDPLTTLM-------ENGYQRLQTEDGYTYVYSGETGTLDHALA 707
Query: 79 DRDNK--------NFLIDNSFSIVSYDQSD---------LDTRRSKLSTHCPLTIEYDFE 121
+ + ++ Y+ + S H P+ +++ F
Sbjct: 708 TGPLSSNVVGVQQWHINTDEPRVLDYNTEYKTESQILGFYAPDAYRSSDHDPVIVDFAFN 767
Query: 122 KGNV 125
+ V
Sbjct: 768 QAPV 771
>gi|295691527|ref|YP_003595220.1| endonuclease/exonuclease/phosphatase [Caulobacter segnis ATCC
21756]
gi|295433430|gb|ADG12602.1| Endonuclease/exonuclease/phosphatase [Caulobacter segnis ATCC
21756]
Length = 319
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 30/119 (25%), Gaps = 3/119 (2%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + LK++ + G P ++ GDFN + +
Sbjct: 199 RLQADELKRFMQEDRTPGAPLIVGGDFNVMHSPERFNHVMADYPFEVVSRWCHHRPGACD 258
Query: 63 CNVIKRNKS-SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + LD + + + V LS H + +
Sbjct: 259 TQISYDGDAPWLDTQDLIGFLDGEQVTVTPVAVEATFDGAS--EPVLSDHDGYKVTFKL 315
>gi|114587559|ref|XP_001174037.1| PREDICTED: deoxyribonuclease gamma isoform 2 [Pan troglodytes]
gi|114587561|ref|XP_001174043.1| PREDICTED: deoxyribonuclease I-like 3 isoform 3 [Pan troglodytes]
gi|114587563|ref|XP_001174051.1| PREDICTED: deoxyribonuclease I-like 3 isoform 4 [Pan troglodytes]
Length = 305
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ F+ GDFN + + ++ D + ++E T N +
Sbjct: 176 KHRWKAENFIFMGDFNAGCSYVPKKAWKNIRLRTDPRFVWLIGDQEDTTVKKSTNCAYDR 235
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDFEKG 123
+ ++ + ++ S S+ + ++ T L S H P+ E+ +
Sbjct: 236 IVLRGQEIVSSVVPKSNSVFDFQKAYKLTEEEALDVSDHFPV--EFKLQSS 284
>gi|4826698|ref|NP_004935.1| deoxyribonuclease gamma precursor [Homo sapiens]
gi|2494173|sp|Q13609|DNSL3_HUMAN RecName: Full=Deoxyribonuclease gamma; Short=DNase gamma; AltName:
Full=DNase I homolog protein DHP2; AltName:
Full=Deoxyribonuclease I-like 3; Short=DNase I-like 3;
AltName: Full=Liver and spleen DNase; Short=LS-DNase;
Short=LSD; Flags: Precursor
gi|1399719|gb|AAB63967.1| DNase1-Like III protein [Homo sapiens]
gi|2905786|gb|AAC35752.1| liver and spleen DNase precursor [Homo sapiens]
gi|16198371|gb|AAH15831.1| DNASE1L3 protein [Homo sapiens]
gi|119585762|gb|EAW65358.1| deoxyribonuclease I-like 3, isoform CRA_a [Homo sapiens]
gi|119585763|gb|EAW65359.1| deoxyribonuclease I-like 3, isoform CRA_a [Homo sapiens]
gi|123986698|gb|ABM83776.1| deoxyribonuclease I-like 3 [synthetic construct]
gi|123999020|gb|ABM87096.1| deoxyribonuclease I-like 3 [synthetic construct]
gi|189053848|dbj|BAG36108.1| unnamed protein product [Homo sapiens]
Length = 305
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ F+ GDFN + + ++ D + ++E T N +
Sbjct: 176 KHRWKAENFIFMGDFNAGCSYVPKKAWKNIRLRTDPRFVWLIGDQEDTTVKKSTNCAYDR 235
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDFEKG 123
+ ++ + ++ S S+ + ++ T L S H P+ E+ +
Sbjct: 236 IVLRGQEIVSSVVPKSNSVFDFQKAYKLTEEEALDVSDHFPV--EFKLQSS 284
>gi|126661140|ref|ZP_01732219.1| 5'-nucleotidase [Cyanothece sp. CCY0110]
gi|126617583|gb|EAZ88373.1| 5'-nucleotidase [Cyanothece sp. CCY0110]
Length = 1664
Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 40/137 (29%), Gaps = 20/137 (14%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L W D ++I GD N T Q L+ E+
Sbjct: 692 EASQALDAWLKSDPTGSGDSDYLITGDLNAYAQEDPITFLENQGYTD---LVEQFVGDEA 748
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------------S 106
+ +LDY + + + + + ++ D+ D
Sbjct: 749 YSFLFDGQYGTLDYALANETLQTQVTGATEWRINADEPDALDYNLDFGRNPDLFDGSTPY 808
Query: 107 KLSTHCPLTIEYDFEKG 123
+ S H P+ + D E
Sbjct: 809 RTSDHDPVIVGLDLEST 825
>gi|300813916|ref|ZP_07094220.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300511979|gb|EFK39175.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 275
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 25/139 (17%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------- 49
+Q W KK+ + Q++ P V+ GDFN I +
Sbjct: 141 DRQV-WDKKYLEYCQELDKNKPLVLCGDFNVAHKEIDLANPNNNHFSAGFTDEERMGFTN 199
Query: 50 -------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + +R K+S FL+ +
Sbjct: 200 LLDGGFVDTFRLINGDVEGKYTWWAQRIKTSKIN-NSGWRIDYFLVSQRIKDKVKKSHMM 258
Query: 102 DTRRSKLSTHCPLTIEYDF 120
D+ + + H P+ +E D
Sbjct: 259 DSGQRQ--DHTPIILEIDL 275
>gi|282882297|ref|ZP_06290928.1| exodeoxyribonuclease III [Peptoniphilus lacrimalis 315-B]
gi|281297847|gb|EFA90312.1| exodeoxyribonuclease III [Peptoniphilus lacrimalis 315-B]
Length = 275
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 40/139 (28%), Gaps = 25/139 (17%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------- 49
+Q W KK+ + Q++ P V+ GDFN I +
Sbjct: 141 DRQV-WDKKYLEYCQELDKNKPLVLCGDFNVAHKEIDLANPNNNHFSAGFTDEERTGFTN 199
Query: 50 -------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + +R K+S FL+ +
Sbjct: 200 LLEGGFVDTFRLINGDVEGKYTWWAQRIKTSKIN-NSGWRIDYFLVSQRIKDRVKKSHMM 258
Query: 102 DTRRSKLSTHCPLTIEYDF 120
D+ + + H P+ +E D
Sbjct: 259 DSGQRQ--DHTPIILEIDL 275
>gi|108759975|ref|YP_631081.1| endonuclease/exonuclease/phosphatase family protein [Myxococcus
xanthus DK 1622]
gi|108463855|gb|ABF89040.1| endonuclease/exonuclease/phosphatase family protein [Myxococcus
xanthus DK 1622]
Length = 715
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 12/131 (9%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSI---------GDTDDFWQKMDPDGLLI 53
+ LK + D+++ T FVI GD+N ++ + +
Sbjct: 335 ERASAALKAYLDEQLPTQHVFVI-GDWNDDVDESISLDPTSGAPLATPYQNFVSDSAHFT 393
Query: 54 RFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+E + + ++ +D+ + + + + S ++ Y + +S H
Sbjct: 394 FITRELSLAGDDTSIGFENVVDHTLATNEAADRYVAESARVL-YVDEWFPDFLNVVSDHR 452
Query: 113 PLTIEYDFEKG 123
P+ Y F
Sbjct: 453 PVVSSYAFSAA 463
>gi|55821526|ref|YP_139968.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMG 18311]
gi|55737511|gb|AAV61153.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMG 18311]
Length = 275
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 25/141 (17%)
Query: 1 MLSQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----------------F 42
+L +Q W KK+AD ++ P + GD+N I + F
Sbjct: 139 LLERQI-WDKKYADYLAELDAQKPVLATGDYNVAHKEIDLANPSSNRRSPGFTDEERAGF 197
Query: 43 WQKMDPDGLLIRFPQE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
++ + + +R+K+S +L N + +
Sbjct: 198 TNLLNKGFIDTYRHLNGDVTGAYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVIKSN 256
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
+D+ + H P+ +E D
Sbjct: 257 MIDSGDRQ--DHTPIVLEIDL 275
>gi|307596055|ref|YP_003902372.1| exodeoxyribonuclease III Xth [Vulcanisaeta distributa DSM 14429]
gi|307551256|gb|ADN51321.1| exodeoxyribonuclease III Xth [Vulcanisaeta distributa DSM 14429]
Length = 246
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 13/126 (10%), Positives = 34/126 (26%), Gaps = 21/126 (16%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKIN--------------SIGDTDDFWQKMDPDGLLI 53
++K+ ++ +++ P ++ GDFN + + + Q + +
Sbjct: 127 AIEKFLNE-LRSRKPVIVCGDFNIARDRLDSSFWDEKHPGLTPEERAWLSQLIKDGFIDA 185
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ + K ++ + S H P
Sbjct: 186 FRELHPNARVFTWRSYKERWR----AMRIDYCMVSEELRGK--VIKAEVLSDVEGSDHVP 239
Query: 114 LTIEYD 119
+ IE
Sbjct: 240 VMIEIS 245
>gi|206562702|ref|YP_002233465.1| putative endonuclease/exonuclease/phosphatase family protein
[Burkholderia cenocepacia J2315]
gi|198038742|emb|CAR54703.1| putative endonuclease/exonuclease/phosphatase family protein
[Burkholderia cenocepacia J2315]
Length = 618
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 30/116 (25%), Gaps = 20/116 (17%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
++ GD N + L+ + V + +LD+ +
Sbjct: 491 VLLIGDLNSYAKEDPVRALEARGY---ANLVARFVGDAAYSYVFRGEAGNLDHALATPPL 547
Query: 83 KNFLIDNSFSIVSYDQS-----------------DLDTRRSKLSTHCPLTIEYDFE 121
+ F ++ D+ + S H P+ I+ +
Sbjct: 548 AARVKAVRFWHINADEPLVLQPVPDYKTSARRSTYYAPDAYRSSDHDPVVIDVALD 603
>gi|108759756|ref|YP_628914.1| endonuclease/exonuclease/phosphatase family protein [Myxococcus
xanthus DK 1622]
gi|108463636|gb|ABF88821.1| endonuclease/exonuclease/phosphatase family protein [Myxococcus
xanthus DK 1622]
Length = 360
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 4/121 (3%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE-ST 62
+ L ++ Q + P+++ GDFN S + S
Sbjct: 230 HEARKLTEFM-QGLTGDEPYIVCGDFNSPPASPVYRYLTTDGRLTCAQAAVGQIDPNVSR 288
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ ++ + DL +R LS H P+ + +
Sbjct: 289 GFPTAGFLHMRMHLDHVFSGAGVRWLDTQETSPFG--DLRSRFHGLSDHMPIVARFALDS 346
Query: 123 G 123
G
Sbjct: 347 G 347
>gi|78063607|ref|YP_373515.1| endonuclease/exonuclease/phosphatase [Burkholderia sp. 383]
gi|77971492|gb|ABB12871.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. 383]
Length = 604
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 32/137 (23%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + W G ++ GDFN + L+ +
Sbjct: 467 RAAAKVADWLAGNPTGVAGQGVLLIGDFNSYTYEDPIRTLETRGY---RNLVARWIGANA 523
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-----------------LDTR 104
V LD+ + + + ++ D+
Sbjct: 524 YSYVYNGEAGYLDHALATLPLASHVKAVHEWHINADEPLALQYTLAYKSAEQQKTFYAPD 583
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ I+
Sbjct: 584 AYRSSDHDPVLIDIALP 600
>gi|332216281|ref|XP_003257277.1| PREDICTED: deoxyribonuclease gamma-like [Nomascus leucogenys]
Length = 304
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 6/124 (4%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + + D + F+ GDFN + + ++ D + ++E
Sbjct: 162 KEIDELVEVYMDVKHRWKAENFIFMGDFNAGCSYVPKKAWKNIRLRTDPRFVWLIGDQED 221
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYD 119
T N + + ++ + ++ S S+ + ++ T L S H P+ E+
Sbjct: 222 TTVKKSTNCAYDRIVLRGQEIVSSVVPKSNSVFDFQKAYKLTEEEALDVSDHFPV--EFK 279
Query: 120 FEKG 123
+
Sbjct: 280 LQSS 283
>gi|241831529|ref|XP_002414867.1| glucose-repressible alcohol dehydrogenase, putative [Ixodes
scapularis]
gi|215509079|gb|EEC18532.1| glucose-repressible alcohol dehydrogenase, putative [Ixodes
scapularis]
Length = 368
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 11/131 (8%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE-- 58
+ ++QG+ L + Q + P +IAGDFN + Q+
Sbjct: 219 LRNEQGKDLLDFV-QNHRGRRPTIIAGDFNAEPTEPVYKTLLAQRDLSLESSYALQPGSG 277
Query: 59 ----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR----SKLST 110
+ R + + + + + + R + S
Sbjct: 278 RREQEPPYTTWKIREDGEVRHTIDYIFFSKADFSLEARLDFPTEDQIGPGRVPSLAYASD 337
Query: 111 HCPLTIEYDFE 121
H L +
Sbjct: 338 HFSLVADLALP 348
>gi|168008755|ref|XP_001757072.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691943|gb|EDQ78303.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 536
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 16/133 (12%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLL 52
+ L++ D +++G VI GDFN I + L
Sbjct: 226 KALEQTCDDLVRSGKHIVIVGDFNVAHKDIDVHSRWKVEEIYSLEEREWLDGFLSRYIDL 285
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
R E + KS + + F + + + + S H
Sbjct: 286 YRHFHPDEKNIFSVWDQKSDARTRNEGLRIDYAICNEGFLTEVLETDIVK-MQKQWSDHA 344
Query: 113 PLTIEYDFEKGNV 125
+ + E+ N+
Sbjct: 345 AVVVTLK-EQPNL 356
>gi|326384660|ref|ZP_08206338.1| exodeoxyribonuclease III [Gordonia neofelifaecis NRRL B-59395]
gi|326196627|gb|EGD53823.1| exodeoxyribonuclease III [Gordonia neofelifaecis NRRL B-59395]
Length = 291
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 34/134 (25%), Gaps = 20/134 (14%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
L + + G F++ GD N T+ +
Sbjct: 155 ARELDRNRLAARRAGREFLLIGDLNIAHLEHDVTNWRPARKMEGFLPMEREWLGEQLSPR 214
Query: 50 ---GLLIRFPQEKEST-CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
++ ++ +S D++ + + +
Sbjct: 215 RLIDVVRVLHGDRPGPLTWWSWAGESFTKDVGWRIDHQLASPGLAARARWTEVDKEPSPD 274
Query: 106 SKLSTHCPLTIEYD 119
+LS H PL + YD
Sbjct: 275 VRLSDHAPLVVGYD 288
>gi|226952709|ref|ZP_03823173.1| endonuclease/exonuclease/phosphatase [Acinetobacter sp. ATCC 27244]
gi|226836550|gb|EEH68933.1| endonuclease/exonuclease/phosphatase [Acinetobacter sp. ATCC 27244]
Length = 821
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/145 (11%), Positives = 41/145 (28%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ E L +WA + ++ GD N Q +++
Sbjct: 638 KAVEQLIQWAAKNPTQVETPNILLLGDMNSYAKEDPILALEKANYKVLLNDKTIGQGEQA 697
Query: 62 TCNVI--------KRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSD----- 100
V +LD+ + D + + + +++ Y++
Sbjct: 698 YSYVFGVSSNAEGYGGAGNLDHAIADSNLYSKVKKAFAWHINADEPTVLDYNEEYKNDEQ 757
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D +
Sbjct: 758 KALFFAEDPYRSSDHDPVIVDIDLQ 782
>gi|108757277|ref|YP_635313.1| endonuclease/exonuclease/phosphatase family protein [Myxococcus
xanthus DK 1622]
gi|108461157|gb|ABF86342.1| endonuclease/exonuclease/phosphatase family protein [Myxococcus
xanthus DK 1622]
Length = 996
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 38/129 (29%), Gaps = 15/129 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ LK + D + ++ GD+N ++ + F + +
Sbjct: 701 QRSSAALKSYLDTSL-PSERVLVIGDWNDDVDQSITQGSDGAPLPS--PFAPFVADTQRY 757
Query: 63 CN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++D+ ++ + + S I+ + + +S H
Sbjct: 758 TFITEPLSLRGLRTTVDYPDAIDHTLVSNELAANYLPGSVEILR-PDAWIPNYGDIVSDH 816
Query: 112 CPLTIEYDF 120
P+ YD
Sbjct: 817 YPVISSYDL 825
>gi|294646775|ref|ZP_06724398.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
gi|292637935|gb|EFF56330.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
Length = 213
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 31/113 (27%), Gaps = 20/113 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + LK+ + P ++ GDFN +S K+ F
Sbjct: 119 QADLLKQLIA---ASPYPTLVCGDFNSLPSSYVYHTIKGDKLQDG-----FQTSGHGYMY 170
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
K K L + Y DL+ S H P+ +
Sbjct: 171 TFKYFK-------HLLRIDYILHSPELNSTDYFSPDLNY-----SDHNPVVMR 211
>gi|290998796|ref|XP_002681966.1| predicted protein [Naegleria gruberi]
gi|284095592|gb|EFC49222.1| predicted protein [Naegleria gruberi]
Length = 354
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 23/137 (16%)
Query: 5 QGEWLKKWADQKIKTGI---PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q +++ ++ K F++ GD N + + D + Q S
Sbjct: 221 QVDYICDRIEKSWKDKNYKGNFIVLGDMND---YNDSETSLGKLLKHDHMADIISQRLPS 277
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFL---IDNSFSIVSYD--------------QSDLDTR 104
Y +D + + V + +
Sbjct: 278 DEQWTHYYNRGNAYNQLDYMFISKHLLLRNPRAKPVIFRKGLPKRAHSFTGKRIKGVGQN 337
Query: 105 RSKLSTHCPLTIEYDFE 121
K S HCP+ ++ F+
Sbjct: 338 EPKASDHCPVYVDLSFD 354
>gi|307316912|ref|ZP_07596354.1| Endonuclease/exonuclease/phosphatase [Sinorhizobium meliloti AK83]
gi|306897534|gb|EFN28278.1| Endonuclease/exonuclease/phosphatase [Sinorhizobium meliloti AK83]
Length = 261
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 31/118 (26%), Gaps = 16/118 (13%)
Query: 4 QQGEWLKK--WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W + V+AGD N S +++ LL
Sbjct: 152 RQATALLGPGWLGGMAEGDAHVVLAGDLNATGRSTAYR-LLARQLSDAQLLTGVKPRPTF 210
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + L+ + S RS S H PL E D
Sbjct: 211 PS------------RLPLLRIDHVLVGKGVEVASCRVHGSTLARS-ASDHLPLLAELD 255
>gi|319761678|ref|YP_004125615.1| endonuclease/exonuclease/phosphatase [Alicycliphilus denitrificans
BC]
gi|330823549|ref|YP_004386852.1| endonuclease/exonuclease/phosphatase [Alicycliphilus denitrificans
K601]
gi|317116239|gb|ADU98727.1| Endonuclease/exonuclease/phosphatase [Alicycliphilus denitrificans
BC]
gi|329308921|gb|AEB83336.1| Endonuclease/exonuclease/phosphatase [Alicycliphilus denitrificans
K601]
Length = 253
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 18/117 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E L+++ +++ G P V+AGDFN + M L + ++
Sbjct: 155 RQVERLQRFIAREVPAGAPLVVAGDFND-------WGLQIKHMLAGFGLYEYDDAPQAFT 207
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + ++S H PL E+
Sbjct: 208 YP---------ARLPLVQLDHVYVR-GLTPLGLQVPRG-RIWWRMSDHLPLIAEFRL 253
>gi|262369657|ref|ZP_06062985.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262315725|gb|EEY96764.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 817
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/147 (10%), Positives = 39/147 (26%), Gaps = 27/147 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L +W + + ++ GD N + Q K +
Sbjct: 634 KAVQTLMQWVAKNPTQVSKPNVLLLGDLNSYAKEDPILALEQANYKVLLNDEKIGQGKAA 693
Query: 62 TCNVI--------KRNKSSLDY--------FVIDRDNKNFLIDNSFSIVSYDQSD----- 100
V +LD+ ++ + + + + + Y++
Sbjct: 694 YSYVFGVASNAQGYGGAGNLDHAIADAALYPLVKKAFALHINADEPTALDYNEEYKTEEQ 753
Query: 101 ----LDTRRSKLSTHCPLTIEYDFEKG 123
+ S H P+ ++ D
Sbjct: 754 IAAFYADDAYRSSDHDPVIVDLDLNDA 780
>gi|241762159|ref|ZP_04760242.1| exodeoxyribonuclease III Xth [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|260753749|ref|YP_003226642.1| exodeoxyribonuclease III Xth [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|283856531|ref|YP_163434.2| exodeoxyribonuclease III Xth [Zymomonas mobilis subsp. mobilis ZM4]
gi|241373409|gb|EER63009.1| exodeoxyribonuclease III Xth [Zymomonas mobilis subsp. mobilis ATCC
10988]
gi|258553112|gb|ACV76058.1| exodeoxyribonuclease III Xth [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|283775536|gb|AAV90323.2| exodeoxyribonuclease III Xth [Zymomonas mobilis subsp. mobilis ZM4]
Length = 264
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 31/123 (25%), Gaps = 23/123 (18%)
Query: 20 GIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGLL-----IRFPQEK 59
P ++ GDFN D ++ +P +
Sbjct: 141 EQPTILVGDFNIAPLESDVWSHKQLLKVVSHTPIEVDHLSRLQASHNWIDLGRHFYPAPE 200
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIE 117
R+K R + S +V + + K S H PL E
Sbjct: 201 RLYTWWSYRSKDWTK-SDRGRRLDHMWASPSLVDHLVGHKVYESCRSWIKPSDHVPLLTE 259
Query: 118 YDF 120
+ F
Sbjct: 260 FSF 262
>gi|221043532|dbj|BAH13443.1| unnamed protein product [Homo sapiens]
Length = 275
Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ F+ GDFN + + ++ D + ++E T N +
Sbjct: 146 KHRWKAENFIFMGDFNAGCSYVPKKAWKNIRLRTDPRFVWLIGDQEDTTVKKSTNCAYDR 205
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDFEKG 123
+ ++ + ++ S S+ + ++ T L S H P+ E+ +
Sbjct: 206 IVLRGQEIVSSVVPKSNSVFDFQKAYKLTEEEALDVSDHFPV--EFKLQSS 254
>gi|326330083|ref|ZP_08196396.1| putative 5'-nucleotidase family protein [Nocardioidaceae bacterium
Broad-1]
gi|325952128|gb|EGD44155.1| putative 5'-nucleotidase family protein [Nocardioidaceae bacterium
Broad-1]
Length = 657
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 31/131 (23%), Gaps = 20/131 (15%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W +AGDFN + L E
Sbjct: 526 RQATALVSWVSSVRSETGVTDVALAGDFNSYTQEDPMQVLYEAGFADSETL----SGNEE 581
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--------------QSDLDTRRSK 107
SLD+ +++R + + ++ +
Sbjct: 582 YSYSFSGLSGSLDHVLLNRHAQRRFTGSDIWSINSGESLLLEYSRYNYTGIDLHTDSPYR 641
Query: 108 LSTHCPLTIEY 118
S H P+ +
Sbjct: 642 SSDHDPVVVGL 652
>gi|314966021|gb|EFT10120.1| conserved domain protein [Propionibacterium acnes HL082PA2]
gi|314981905|gb|EFT25998.1| conserved domain protein [Propionibacterium acnes HL110PA3]
gi|315090720|gb|EFT62696.1| conserved domain protein [Propionibacterium acnes HL110PA4]
gi|315094968|gb|EFT66944.1| conserved domain protein [Propionibacterium acnes HL060PA1]
gi|315104193|gb|EFT76169.1| conserved domain protein [Propionibacterium acnes HL050PA2]
gi|327328097|gb|EGE69866.1| endonuclease/exonuclease/phosphatase family protein
[Propionibacterium acnes HL103PA1]
Length = 242
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 19/131 (14%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L W ++ P + GDFN + + ++
Sbjct: 68 QAKALTGWVNKTFADD-PVFMLGDFNAYAMEDPIRAMKTSGFSE----VVEEHDPDAASY 122
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------------LST 110
SLD+ + + ++ +S + S
Sbjct: 123 EFSGRVGSLDHIFANAKAHELVSGAGIWDINGSESVAMQYSRRNDNVTDFYTTSPFGASD 182
Query: 111 HCPLTIEYDFE 121
H P + + +
Sbjct: 183 HSPALVGFSMQ 193
>gi|282854654|ref|ZP_06263989.1| conserved domain protein [Propionibacterium acnes J139]
gi|282582236|gb|EFB87618.1| conserved domain protein [Propionibacterium acnes J139]
Length = 236
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 19/131 (14%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L W ++ P + GDFN + + ++
Sbjct: 62 QAKALTGWVNKTFADD-PVFMLGDFNAYAMEDPIRAMKTSGFSE----VVEEHDPDAASY 116
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------------LST 110
SLD+ + + ++ +S + S
Sbjct: 117 EFSGRVGSLDHIFANAKAHELVSGAGIWDINGSESVAMQYSRRNDNVTDFYTTSPFGASD 176
Query: 111 HCPLTIEYDFE 121
H P + + +
Sbjct: 177 HSPALVGFSMQ 187
>gi|189242136|ref|XP_001815293.1| PREDICTED: similar to ap endonuclease, partial [Tribolium
castaneum]
Length = 130
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------ 48
E +K+ + + P +I GD N I + +
Sbjct: 3 EQFEKFIK-NLDSQKPVIICGDMNVAHKEIDLANPKTNTKNAGFTVEERDGMTAFLGNGY 61
Query: 49 -DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D +P+++++ + FL+ V ++
Sbjct: 62 VDIYRHLYPEKEKAYTFWTYMGNARAKNVGW--RLDYFLVSQ--RFVDNVCDNIIHSDVL 117
Query: 108 LSTHCPLTIEYD 119
S HCPL++
Sbjct: 118 GSDHCPLSLHIQ 129
>gi|311739953|ref|ZP_07713787.1| possible exodeoxyribonuclease III [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311305026|gb|EFQ81095.1| possible exodeoxyribonuclease III [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 305
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 20/83 (24%)
Query: 37 GDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ D P+E R ++ + D +
Sbjct: 223 EPWSPAAEPQWFDVARRLHPEEDGPYTWWTYRGQAFNNNAGWRIDYQAVTRPMLERAQRT 282
Query: 97 DQSDLDTRRSKLSTHCPLTIEYD 119
T + S H PL +EY
Sbjct: 283 WVDKAPTVEQRWSDHSPLLVEYR 305
>gi|55620521|ref|XP_516558.1| PREDICTED: similar to DNase1-Like III protein isoform 5 [Pan
troglodytes]
Length = 275
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ F+ GDFN + + ++ D + ++E T N +
Sbjct: 146 KHRWKAENFIFMGDFNAGCSYVPKKAWKNIRLRTDPRFVWLIGDQEDTTVKKSTNCAYDR 205
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDFEKG 123
+ ++ + ++ S S+ + ++ T L S H P+ E+ +
Sbjct: 206 IVLRGQEIVSSVVPKSNSVFDFQKAYKLTEEEALDVSDHFPV--EFKLQSS 254
>gi|169829765|ref|YP_001699923.1| exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
gi|168994253|gb|ACA41793.1| Exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
Length = 251
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 32/131 (24%), Gaps = 24/131 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------ 48
E L + Q + + P V GD N I + +
Sbjct: 124 EHLASYL-QDLNSKKPVVYCGDLNVAHTEIDLKNAKSNIGNSGFTYEERAKFSELLASGF 182
Query: 49 -DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D + P E + NK F++ +
Sbjct: 183 VDSFRYKHPNETDHFTWWSYMNKVRERNIGW--RIDYFIVSEQLKNQINQATIHP--HIM 238
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 239 GSDHCPIELQL 249
>gi|320007682|gb|ADW02532.1| Endonuclease/exonuclease/phosphatase [Streptomyces flavogriseus
ATCC 33331]
Length = 804
Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 31/119 (26%), Gaps = 14/119 (11%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + + +K V GD N S K+ + E+
Sbjct: 689 RQAAEVNTFVTSLLKADKSARVVTLGDLNDFAFSPTVKTLTAGKVLRPLITTLPAGEQ-- 746
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYD 119
V N + + L + S YD + S H P + D
Sbjct: 747 YSYVYDGN---------SQTLDHILTSPAVSRFDYDVVHINAEFADQASDHDPQIVRID 796
>gi|239916907|ref|YP_002956465.1| putative glutamate--cysteine ligase/putative amino acid ligase
[Micrococcus luteus NCTC 2665]
gi|281414638|ref|ZP_06246380.1| putative glutamate--cysteine ligase/putative amino acid ligase
[Micrococcus luteus NCTC 2665]
gi|239838114|gb|ACS29911.1| putative glutamate--cysteine ligase/putative amino acid ligase
[Micrococcus luteus NCTC 2665]
Length = 902
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 32/133 (24%), Gaps = 22/133 (16%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q E L +A++ ++ GDFN G L
Sbjct: 705 QAEALVAFAERMKAETGTDRVLLMGDFNSYEKEDPIRVLEAAGYVSQGAL------TGEY 758
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--------------SDLDTRRSKL 108
SLD + +++ ++ + +
Sbjct: 759 SYAFGGAVGSLDGIYASPSAAAAISGQDIWMINANESVALEYSRHNYVAEDLYSADQWRS 818
Query: 109 STHCPLTIEYDFE 121
S H P+ + +
Sbjct: 819 SDHNPILVGLQLD 831
>gi|115372829|ref|ZP_01460134.1| putative hemagglutinin-related protein [Stigmatella aurantiaca
DW4/3-1]
gi|310818499|ref|YP_003950857.1| endonuclease/exonuclease/phosphatase domain-containing protein
[Stigmatella aurantiaca DW4/3-1]
gi|115370096|gb|EAU69026.1| putative hemagglutinin-related protein [Stigmatella aurantiaca
DW4/3-1]
gi|309391571|gb|ADO69030.1| Endonuclease/exonuclease/phosphatase domain protein [Stigmatella
aurantiaca DW4/3-1]
Length = 526
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 12/121 (9%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC---- 63
LK++ D ++ + ++ GD+N ++ D P + P +
Sbjct: 405 ALKQYLDSQLS-NVRVIVLGDWNDDVDISIYRDSGSYLPSPYQNFVEAPASYQFLTMPLS 463
Query: 64 ----NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +D+ +I + + NS ++ + S H P+ +D
Sbjct: 464 VSGVGSTVGYSTFIDHQLISNELFGDYVGNSTQVLYPAI---PNYANTTSDHYPIQSRFD 520
Query: 120 F 120
F
Sbjct: 521 F 521
>gi|298708328|emb|CBJ48391.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 462
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 34/166 (20%), Gaps = 56/166 (33%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM--------------------- 46
LK + + G P V+ GD N + + + +
Sbjct: 297 ALKAYVESLEAQGKPVVLNGDLNVAHLDLDIYNRGAKHLPKNAATTKEERDSFDSWVNGG 356
Query: 47 -DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
D P + + R + F+ N+
Sbjct: 357 KVSDAFRRLHPDAEGAYTYWSVRTGARPVNRG--LRLDYFVCSNAVFEDGAAGGGQAKAT 414
Query: 106 SK--------------------------------LSTHCPLTIEYD 119
++ +S HCP+ I
Sbjct: 415 ARRAKGSAPKGKGATGAKGMVVHDCFMLDEATVGVSDHCPIGITLR 460
>gi|119961986|ref|YP_946639.1| 5'-nucleotidase family protein [Arthrobacter aurescens TC1]
gi|119948845|gb|ABM07756.1| putative 5'-nucleotidase family protein [Arthrobacter aurescens
TC1]
Length = 1509
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 29/133 (21%), Gaps = 22/133 (16%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q E L ++ + + GDFN
Sbjct: 709 KQAESLLAFSKDLQASKGTDKVFLIGDFNAYAKEDPINVLTGAGYTD------LEVGTGK 762
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--------------QSDLDTRRSK 107
+ SLD+ + + ++ + +
Sbjct: 763 HSYLFGGMVGSLDHILASPAAHKVVTGTDIWNINSVESVALEYSRYNNNVTNYYAQDEFR 822
Query: 108 LSTHCPLTIEYDF 120
S H P+ + +
Sbjct: 823 ASDHDPVVVGLNL 835
>gi|167840494|ref|ZP_02467178.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
thailandensis MSMB43]
Length = 624
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 13/135 (9%), Positives = 29/135 (21%), Gaps = 22/135 (16%)
Query: 3 SQQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
S+ + W + ++ GD N +
Sbjct: 466 SRAAAKVADWLARNPTGAHSEGVLLIGDLNSHTYEDPVRALESRGYVNLVSSKI---GAG 522
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDT 103
+ V LD+ + + ++ D+
Sbjct: 523 AYSYVYNGEAGYLDHALATNALAWRVKAVHDWHINADEPIALQYTLAYKTAEQQRTYYAP 582
Query: 104 RRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 583 DAYRSSDHDPVLIDI 597
>gi|21106532|gb|AAM35338.1| nuclease [Xanthomonas axonopodis pv. citri str. 306]
Length = 1131
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 40/152 (26%), Gaps = 32/152 (21%)
Query: 3 SQQGEW--LKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD----------- 47
+Q + L + Q++ ++ GDFN + G D
Sbjct: 710 KRQAQAEYLARLLQTRQQLNPDEKVLVMGDFNAFEFNDGYVDAMGTVTGKPAPDAQTVVG 769
Query: 48 ---------PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
L F +S N SLD+ + + S S+
Sbjct: 770 GDGADLVNPDYTDLTWFNTPDQSYSYAFDGNVQSLDHILANEALMRAPQIASLSVGHARI 829
Query: 99 SDLDTRRS--------KLSTHCPLTIEYDFEK 122
+ + +LS H P + +
Sbjct: 830 NADFPGTARNDANTPTRLSDHDPTVVLLRMRE 861
>gi|77748525|ref|NP_640802.2| nuclease [Xanthomonas axonopodis pv. citri str. 306]
Length = 1193
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 40/152 (26%), Gaps = 32/152 (21%)
Query: 3 SQQGEW--LKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD----------- 47
+Q + L + Q++ ++ GDFN + G D
Sbjct: 772 KRQAQAEYLARLLQTRQQLNPDEKVLVMGDFNAFEFNDGYVDAMGTVTGKPAPDAQTVVG 831
Query: 48 ---------PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
L F +S N SLD+ + + S S+
Sbjct: 832 GDGADLVNPDYTDLTWFNTPDQSYSYAFDGNVQSLDHILANEALMRAPQIASLSVGHARI 891
Query: 99 SDLDTRRS--------KLSTHCPLTIEYDFEK 122
+ + +LS H P + +
Sbjct: 892 NADFPGTARNDANTPTRLSDHDPTVVLLRMRE 923
>gi|325927724|ref|ZP_08188952.1| putative extracellular nuclease [Xanthomonas perforans 91-118]
gi|325541925|gb|EGD13439.1| putative extracellular nuclease [Xanthomonas perforans 91-118]
Length = 1193
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 40/152 (26%), Gaps = 32/152 (21%)
Query: 3 SQQGEW--LKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD----------- 47
+Q + L + Q++ ++ GDFN + G D
Sbjct: 772 KRQAQAEYLARLLQTRQQLNPDEKVLVMGDFNAFEFNDGYVDAMGTVTGKPAPDAQTVVG 831
Query: 48 ---------PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
L F +S N SLD+ + + S S+
Sbjct: 832 GDGTDLVNPDYTDLTWFNTPDQSYSYAFDGNVQSLDHILANDALMRAPQIASLSVGHARI 891
Query: 99 SDLDTRRS--------KLSTHCPLTIEYDFEK 122
+ + +LS H P + K
Sbjct: 892 NADFPGTARNDANTPTRLSDHDPTVVLLRMTK 923
>gi|269217995|ref|ZP_06161849.1| putative extracellular nuclease [Actinomyces sp. oral taxon 848
str. F0332]
gi|269212930|gb|EEZ79270.1| putative extracellular nuclease [Actinomyces sp. oral taxon 848
str. F0332]
Length = 897
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 19/126 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L +WA ++ P + GDFN D D +R +
Sbjct: 518 QAKALAQWAKEQY-GNRPTFLVGDFNSYSAE----DPILALRDAGYSEVRDSIGRADHSY 572
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS--------------KLST 110
SLD+ + + + + V+ +S + S
Sbjct: 573 QFGGAVGSLDHVLANDAARRMVAGADVWSVNAMESPAFEYSRNNYNVKQLWDGGPFRSSD 632
Query: 111 HCPLTI 116
H P+ +
Sbjct: 633 HDPVKV 638
>gi|254471153|ref|ZP_05084555.1| 5'-nucleotidase [Pseudovibrio sp. JE062]
gi|211959299|gb|EEA94497.1| 5'-nucleotidase [Pseudovibrio sp. JE062]
Length = 1553
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 18/135 (13%)
Query: 6 GEWLKKWADQKIKT---GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L +W + ++ GD N + D L E+
Sbjct: 1417 AKELHEWLRTEYAGAGLDPDILVIGDLNTYGKGDSVQELIEGGDMTDLLSQYL--GDEAY 1474
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LS 109
V + SLD+ + + + ++ D+ DL + S+ S
Sbjct: 1475 SFVFDGQRGSLDHALASDSLAEQVTGLAEWHINADEPDLLSYNSRFTDAGFYNDDQYGAS 1534
Query: 110 THCPLTIEYDFEKGN 124
H PL I D +
Sbjct: 1535 DHDPLIIGLDLSSPS 1549
>gi|21233269|ref|NP_639186.1| exodeoxyribonuclease III [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66770227|ref|YP_244989.1| exodeoxyribonuclease III [Xanthomonas campestris pv. campestris
str. 8004]
gi|21115105|gb|AAM43077.1| exodeoxyribonuclease III [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66575559|gb|AAY50969.1| exodeoxyribonuclease III [Xanthomonas campestris pv. campestris
str. 8004]
Length = 266
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/142 (11%), Positives = 37/142 (26%), Gaps = 33/142 (23%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
EWL+ + + +G +V+ GD+N +++ + + +
Sbjct: 127 MEWLRPILSEWLASGRQYVLCGDWNIVRSALDIKNWKSNQKNSGCLPPERDWLNGLCADL 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ E R + + L+
Sbjct: 187 LDEADASNGRGWVDSYRVLHPQGEDYTWWSNRGAARANNVGW--RIDYQLVTPGLRDKVQ 244
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
S R + S H P ++Y
Sbjct: 245 ACSIY--REQRFSDHAPYIVDY 264
>gi|299145020|ref|ZP_07038088.1| endonuclease/exonuclease/phosphatase [Bacteroides sp. 3_1_23]
gi|298515511|gb|EFI39392.1| endonuclease/exonuclease/phosphatase [Bacteroides sp. 3_1_23]
Length = 289
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 10/127 (7%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----GLLIRFPQE 58
+ + + + P ++ GDFN S + D L
Sbjct: 166 RESAKLVISKIKEMCGKD-PVILTGDFNVDQTSESYQVLHESGILSDSYEVAQLRYATNG 224
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK---LSTHCPLT 115
+ N + +D+ + ++ + +Y + T + + S H P+
Sbjct: 225 TCAGWNPNTYTPNRIDHIFVTKN--FAVEKYGVLTDTYRIKNEATGKYEARIPSDHFPVK 282
Query: 116 IEYDFEK 122
+ K
Sbjct: 283 AVLKYTK 289
>gi|254442161|ref|ZP_05055637.1| endonuclease/exonuclease/phosphatase family [Verrucomicrobiae
bacterium DG1235]
gi|198256469|gb|EDY80777.1| endonuclease/exonuclease/phosphatase family [Verrucomicrobiae
bacterium DG1235]
Length = 1171
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 15/135 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIP--FVIAGDFNR----KINSIGDTDDFWQKMDPDGL----- 51
Q L+ +AD + I GDFN + + +
Sbjct: 1028 KLQATVLRDFADILLAENPNALLAITGDFNDFQFGEPGEGDSHTLGIIEGEEGEYPLENI 1087
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR----SK 107
+ E V + N +LD+F++ + K L+ F ++ D +
Sbjct: 1088 VKTRIPENSRFSYVYEGNSQALDHFLLSKKLKKKLLRAEFIHLNAAYLDEFMEDASVLER 1147
Query: 108 LSTHCPLTIEYDFEK 122
S H PL ++++ +
Sbjct: 1148 SSDHDPLLLKFNLTR 1162
>gi|329667966|gb|AEB93914.1| exodeoxyribonuclease A [Lactobacillus johnsonii DPC 6026]
Length = 260
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 35/133 (26%), Gaps = 24/133 (18%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKIN-------SIGDTDDFWQKMDPD--------- 49
+ + + + + P +I GD + + ++
Sbjct: 129 AQIFRNYVTKLM-QYKPVIIGGDMSVAHERIDLAEPDDNHHRPGFTGIERKEFSELLNAG 187
Query: 50 --GLLIRFPQEKESTCNVIKRNK-SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
F ++ R+K + + D + + + +
Sbjct: 188 FIDTFRYFHPDEAKYTYWSYRDKEARAENLGWRLDYFLVSNNLEDKLTNAKILNNIMG-- 245
Query: 107 KLSTHCPLTIEYD 119
S HCP+ ++ D
Sbjct: 246 --SDHCPIELDVD 256
>gi|294667686|ref|ZP_06732898.1| nuclease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535]
gi|292602526|gb|EFF45965.1| nuclease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535]
Length = 1193
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 40/152 (26%), Gaps = 32/152 (21%)
Query: 3 SQQGEW--LKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD----------- 47
+Q + L + Q++ ++ GDFN + G D
Sbjct: 772 KRQAQAEYLARLLQTRQQLNPDEKVLVMGDFNAFEFNDGYVDAMGTVTGKPAPDAQTVVG 831
Query: 48 ---------PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
L F +S N SLD+ + + S S+
Sbjct: 832 GDGADLVNPDYTDLTWFNTPDQSYSYAFDGNVQSLDHILANEALMRAPQIASLSVGHARI 891
Query: 99 SDLDTRRS--------KLSTHCPLTIEYDFEK 122
+ + +LS H P + K
Sbjct: 892 NADFPGTARNDANTPTRLSDHDPTVVLLRMRK 923
>gi|294627209|ref|ZP_06705796.1| nuclease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
gi|292598448|gb|EFF42598.1| nuclease [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122]
Length = 1193
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 40/152 (26%), Gaps = 32/152 (21%)
Query: 3 SQQGEW--LKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD----------- 47
+Q + L + Q++ ++ GDFN + G D
Sbjct: 772 KRQAQAEYLARLLQTRQQLNPDEKVLVMGDFNAFEFNDGYVDAMGTVTGKPAPDAQTVVS 831
Query: 48 ---------PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
L F +S N SLD+ + + S S+
Sbjct: 832 GDGADLVNPDYTDLTWFNTPDQSYSYAFDGNVQSLDHILANEALMRAPQIASLSVGHARI 891
Query: 99 SDLDTRRS--------KLSTHCPLTIEYDFEK 122
+ + +LS H P + K
Sbjct: 892 NADFPGTARNDANTPTRLSDHDPTVVLLRMRK 923
>gi|58337957|ref|YP_194542.1| exodeoxyribonuclease [Lactobacillus acidophilus NCFM]
gi|227902875|ref|ZP_04020680.1| exodeoxyribonuclease [Lactobacillus acidophilus ATCC 4796]
gi|58255274|gb|AAV43511.1| exodeoxyribonuclease [Lactobacillus acidophilus NCFM]
gi|227869391|gb|EEJ76812.1| exodeoxyribonuclease [Lactobacillus acidophilus ATCC 4796]
Length = 253
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 34/134 (25%), Gaps = 23/134 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+ + + K+ P +I GD + + I + K
Sbjct: 123 AQAFRNYV-TKLANNKPVIIGGDMSVAHDEIDLAEPEKNKNHAGFTGDERKEFTELLNAG 181
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ E+ + + + D + + D +
Sbjct: 182 FEDTFRTLHPKDEAYTYWSRHDNARDKNIGERLDYFLVSHALTDKVEGSDILNNIDE--- 238
Query: 108 LSTHCPLTIEYDFE 121
S HCP+ + D +
Sbjct: 239 -SDHCPIELNMDIK 251
>gi|254522846|ref|ZP_05134901.1| endonuclease/exonuclease/phosphatase family protein
[Stenotrophomonas sp. SKA14]
gi|219720437|gb|EED38962.1| endonuclease/exonuclease/phosphatase family protein
[Stenotrophomonas sp. SKA14]
Length = 291
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ +P V+ GDFN + D + + + D
Sbjct: 193 ATLPADLPVVLTGDFNSEPGGETYKAFTRVLQDTRTQVKAPQGPRLT----------FHD 242
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ ++++ F+ S+ D S H PL +E D+ K
Sbjct: 243 FTGKATVQLDWVLVRGFTARSFLTDDRRIDGVLPSDHFPLVVELDWPK 290
>gi|329963050|ref|ZP_08300830.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
fluxus YIT 12057]
gi|328529091|gb|EGF56021.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
fluxus YIT 12057]
Length = 287
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 1/103 (0%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ G+P ++ GDFN + S +P+ L + +
Sbjct: 186 LSDGLPVIVTGDFNSEPESDVIKHVT-DPSNPEHLTDARQASPIVYGPAWSFHDFGKIPY 244
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N ++ Y + LS H P+ + +
Sbjct: 245 DKRPLIDYVFVRNRLKVLRYGVLAETEENAFLSDHAPILVTVE 287
>gi|55823454|ref|YP_141895.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus CNRZ1066]
gi|55739439|gb|AAV63080.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus CNRZ1066]
Length = 275
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 25/141 (17%)
Query: 1 MLSQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----------------- 41
+L +Q W +K+AD ++ P + GD+N I +
Sbjct: 139 LLERQI-WDEKYADYLAELDAQKPVLATGDYNVAHKEIDLANPSSNRRSPGFTDEERAGF 197
Query: 42 --FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
K D + +R+K+S +L N + +
Sbjct: 198 TNLLNKGFTDTYRHLNGDVTGAYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVIKSN 256
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
+D+ + H P+ +E D
Sbjct: 257 MIDSGDRQ--DHTPIVLEIDL 275
>gi|126651518|ref|ZP_01723722.1| exodeoxyribonuclease [Bacillus sp. B14905]
gi|126591771|gb|EAZ85867.1| exodeoxyribonuclease [Bacillus sp. B14905]
Length = 251
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 28/133 (21%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGL 51
+ L + Q + + P V GD N I + + ++ G
Sbjct: 124 DRLAGYL-QDLNSKKPVVYCGDLNVAHTEIDLKNAKSNVGNSGFTYEERAKFSELLASGF 182
Query: 52 LIRF----PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ F P E + NK F++ +Q D T
Sbjct: 183 VDSFRYKHPNETDHFTWWSYMNKVRERNIGW--RIDYFIVSEQLK----NQIDQATIHPH 236
Query: 108 L--STHCPLTIEY 118
+ S HCP+ ++
Sbjct: 237 IMGSDHCPIELQL 249
>gi|46109934|ref|XP_382025.1| hypothetical protein FG01849.1 [Gibberella zeae PH-1]
Length = 298
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 14/110 (12%), Positives = 29/110 (26%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
++W K +I GDFN + + + P+EK +
Sbjct: 186 REWGQAGNKKASAVLIGGDFNSEPDDGAYKTITAPGSGISDVSDLVPKEKRYGNETTYTS 245
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++ ++S H P+ + D
Sbjct: 246 FGGTWPTSRIDFLFIQEPRTATVQTFGVLANSFDDGVRISDHRPVVSDLD 295
>gi|320159473|ref|YP_004172697.1| hypothetical protein ANT_00630 [Anaerolinea thermophila UNI-1]
gi|319993326|dbj|BAJ62097.1| hypothetical protein ANT_00630 [Anaerolinea thermophila UNI-1]
Length = 264
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 11/117 (9%), Positives = 25/117 (21%), Gaps = 7/117 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--QKMDPDGLLIRFPQEKESTC 63
+ L++ + + ++ GDFN S R
Sbjct: 153 AKLLRRRIEA-LPPDCNVLVTGDFNAGKRSCVYRTLLGEGASCHRLRDAYRAVHTDGRGE 211
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ L+ + + + S H P+ +
Sbjct: 212 GTFHAFGMLPR----PQAIDWVLVSKDLPVEDAGVACVSVGGVYPSDHYPVWAKVRL 264
>gi|312219360|emb|CBX99304.1| similar to endonuclease/exonuclease/phosphatase family protein
[Leptosphaeria maculans]
Length = 614
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 28/117 (23%), Gaps = 5/117 (4%)
Query: 5 QGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + + + AGDFN D + E E
Sbjct: 498 QSQITANFVKEILTKDKNAHIITAGDFNEFAFVEPLEQYVNISGLQDLDAVAKLPELERY 557
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N LD+ + + ++ S H P D
Sbjct: 558 TYLFDMNAQQLDHIFVS---DAVAKGQDAQYEHIHVNTWPEDAAQASDHDPSVARLD 611
>gi|209549109|ref|YP_002281026.1| endonuclease/exonuclease/phosphatase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534865|gb|ACI54800.1| Endonuclease/exonuclease/phosphatase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 267
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 16/116 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L ++ G V+ GDFN +S + + GL
Sbjct: 167 KKQAAALVALVERVWPGGEGLVVCGDFNVLPDSE-----TFAILARLGLSELVTGNGLVD 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K L+ I ++ + +S H L ++
Sbjct: 222 TRTSYYLKQGRF-------ADYMLVTPEVKIARFEVVEAPE----VSDHRALLLDI 266
>gi|119492055|ref|XP_001263522.1| endonuclease/exonuclease/phosphatase family protein [Neosartorya
fischeri NRRL 181]
gi|119411682|gb|EAW21625.1| endonuclease/exonuclease/phosphatase family protein [Neosartorya
fischeri NRRL 181]
Length = 606
Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 31/119 (26%), Gaps = 7/119 (5%)
Query: 3 SQQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
Q + + ++ + + +GDFN + + D + E
Sbjct: 490 KAQAKLVAEFTSSILAEDSSAKIIASGDFNEFAFAQPIETFLAESGLKDLDEVAGIAATE 549
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N LD+ + + + + + S H P +
Sbjct: 550 RYTYLYDMNCQQLDHMFVSPAL-----AKGAEMHHLHVNTWVSYDDQASDHDPTVALLN 603
>gi|332883343|gb|EGK03626.1| hypothetical protein HMPREF9456_01693 [Dysgonomonas mossii DSM
22836]
Length = 305
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 36/144 (25%), Gaps = 30/144 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + + P ++ GDFN T + D + +
Sbjct: 167 EESAKLVLAKIKEMCGND-PVILTGDFNVDQTHKSYTLLSTSGILTDSYDRAAVRYALNG 225
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------------- 107
+ + + + S S+ Y R +
Sbjct: 226 T-----FNAFKPDLLTSSRIDHIFVSPSMSVERYGVLTDTYRTPRDGESNIKTGDFPKEY 280
Query: 108 ---------LSTHCPLTIEYDFEK 122
S H P++++ ++K
Sbjct: 281 SFDGCDIRLPSDHFPVSVKLIYKK 304
>gi|311746546|ref|ZP_07720331.1| endonuclease/exonuclease/phosphatase family protein [Algoriphagus
sp. PR1]
gi|311302536|gb|EAZ79778.2| endonuclease/exonuclease/phosphatase family protein [Algoriphagus
sp. PR1]
Length = 348
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 31/123 (25%), Gaps = 20/123 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
S+Q L + + P ++ GD N S ++ +
Sbjct: 245 SKQLSLLVEHIQ---NSPHPIILMGDLNEVPYSYTY----FKLSENLENAFELMGRGFGF 297
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+I + + + S H P++ + +E
Sbjct: 298 TYNR---------ILIFLRIDHIFASPQLKPIQFKTHREVDY----SDHYPVSATFTWEG 344
Query: 123 GNV 125
N+
Sbjct: 345 LNI 347
>gi|153806752|ref|ZP_01959420.1| hypothetical protein BACCAC_01023 [Bacteroides caccae ATCC 43185]
gi|149131429|gb|EDM22635.1| hypothetical protein BACCAC_01023 [Bacteroides caccae ATCC 43185]
Length = 366
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 20/119 (16%)
Query: 3 SQQGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +Q + P ++ GDFN +S K+ F
Sbjct: 267 KRAVQA--NFINQLVSASPYPTLVCGDFNSLPSSYVYHTVKGDKLLDG-----FQTGGHG 319
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
K K L + Y D + S H P+ +
Sbjct: 320 YMYTFKYFK-------HLLRIDYILHSPELKGLDYFSPDWEY-----SDHNPVVMRMKL 366
>gi|126736755|ref|ZP_01752493.1| extracellular nuclease [Roseobacter sp. CCS2]
gi|126713726|gb|EBA10599.1| extracellular nuclease [Roseobacter sp. CCS2]
Length = 1132
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 20/135 (14%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L W D + +I GD N T +
Sbjct: 829 EAADILAAWLNSDPTGQGSENTLILGDLNAYAKEDPLTVLADAGFTDLAAAEL---GDAA 885
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------------S 106
V +LDY + + + ++ + ++ D++D +
Sbjct: 886 YSFVFDGQIGTLDYALANDALADNVVGVTEWHINADEADALDYNLDFGRDPALFDGDSPN 945
Query: 107 KLSTHCPLTIEYDFE 121
+ S H P+ + + F+
Sbjct: 946 RNSDHDPVIVSFQFD 960
>gi|119476762|ref|ZP_01617072.1| exodeoxyribonuclease III [marine gamma proteobacterium HTCC2143]
gi|119450018|gb|EAW31254.1| exodeoxyribonuclease III [marine gamma proteobacterium HTCC2143]
Length = 257
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 32/132 (24%), Gaps = 23/132 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPD 49
+ + F+ D+N + + + +
Sbjct: 129 IMDHFKAMRRKRREFIFCADWNICHREVDIKNWRGNRKNSGFLPHERAWLDSLFDDVGYA 188
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
QE++ R ++ ++ QS + + S
Sbjct: 189 DAFRVINQEEDQYTWWSNRGQAWAKNVGW--RLDYQVVTPGLVDKI--QSASIYKDERFS 244
Query: 110 THCPLTIEYDFE 121
H P ++YD +
Sbjct: 245 DHAPFIMDYDID 256
>gi|58583572|ref|YP_202588.1| hypothetical protein XOO3949 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58428166|gb|AAW77203.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 342
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ IP V+ GDFN + D + + +++ N + +D
Sbjct: 245 ATLPADIPVVVTGDFNSDPDQGTYRTLTAVLGDARAHVAKPQGPEKTFQNFTTQPTRRID 304
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + + D + S H P+ +++ +
Sbjct: 305 WILFR----------GLTPTRFSTLDARSGGILPSDHYPVLAAFEWPQ 342
>gi|109037932|ref|XP_001097104.1| PREDICTED: deoxyribonuclease gamma isoform 1 [Macaca mulatta]
Length = 305
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 45/124 (36%), Gaps = 6/124 (4%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D + F+ GDFN + + ++ D + ++E
Sbjct: 163 KEIDELVDVYMDVKHRWKAENFIFMGDFNAGCSYVPKKAWKNIRLRTDPRFVWLIGDQED 222
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYD 119
T + + ++ + ++ S S+ + ++ T L S H P+ E+
Sbjct: 223 TTVKRSTKCAYDRIVLRGQEIVSSVVPKSNSVFDFQKAYKLTEEEALDVSDHFPV--EFK 280
Query: 120 FEKG 123
+
Sbjct: 281 LQSS 284
>gi|290562880|gb|ADD38834.1| DNA-apurinic or apyrimidinic site lyase [Lepeophtheirus salmonis]
Length = 317
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 13/114 (11%), Positives = 29/114 (25%), Gaps = 22/114 (19%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQK------------------MDPDGLLIRFPQE-KEST 62
P + +GD N I + + + + E +
Sbjct: 203 PVIASGDLNVAHTEIDLANPKTNQKNAGFTPEERAGFDDLLSLGFVDTYRKLNPEKTGAY 262
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ FLI + + + + + S HCP+++
Sbjct: 263 TFWTYMMNARAKNVGW--RLDYFLISDRWFESN-VCDSVIRSKVLGSDHCPISL 313
>gi|289663812|ref|ZP_06485393.1| nuclease [Xanthomonas campestris pv. vasculorum NCPPB702]
Length = 1195
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 40/152 (26%), Gaps = 32/152 (21%)
Query: 3 SQQGEW--LKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQ-------------- 44
+Q + L + Q++ ++ GDFN + G D
Sbjct: 772 KRQAQAEYLARLLQTRQQLNPDEKVLVMGDFNAFEFNDGYVDAMGTVTGKPAPDAQTVVG 831
Query: 45 ------KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
L F +S N SLD+ + + S S+
Sbjct: 832 GDGADLVNTDYTDLTWFTTPDQSYSYAFDGNVQSLDHILANEALMRSPQIASLSVGHARI 891
Query: 99 SDLDTRRS--------KLSTHCPLTIEYDFEK 122
+ + +LS H P + K
Sbjct: 892 NADFPGTARNDANTPTRLSDHDPTVVLLRMSK 923
>gi|154491892|ref|ZP_02031518.1| hypothetical protein PARMER_01519 [Parabacteroides merdae ATCC
43184]
gi|154088133|gb|EDN87178.1| hypothetical protein PARMER_01519 [Parabacteroides merdae ATCC
43184]
Length = 373
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 30/124 (24%), Gaps = 20/124 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ ++Q + + + ++ GDFN S G L
Sbjct: 270 IRARQARAVAEEIKKI--DTDYVLVCGDFNDTPISYAHRTI-------QGPLKDAYAASG 320
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V N L + ++ + S H PL
Sbjct: 321 RGVGVTYNENFF------WFRIDNILHSANMKPINCTVDKVRY-----SDHYPLWCYLQL 369
Query: 121 EKGN 124
++ +
Sbjct: 370 KEND 373
>gi|260910486|ref|ZP_05917155.1| AP endonuclease domain protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260635432|gb|EEX53453.1| AP endonuclease domain protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 362
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 23/117 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ + G ++ GDFN S ++ + C
Sbjct: 263 QVDAVARFVRKH--KGHSVILCGDFNDSPIS---------------YARHRMAKELTDCY 305
Query: 65 VIKRNKSSLDYFVIDR--DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
V N + Y N + + + + + K S H P+ +
Sbjct: 306 VASGNGPGISYHRNAFYVRIDNIMCSDDWQPLKCVV----ENKVKTSDHYPIFCQLQ 358
>gi|116628238|ref|YP_820857.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMD-9]
gi|116101515|gb|ABJ66661.1| Exonuclease III [Streptococcus thermophilus LMD-9]
gi|312278865|gb|ADQ63522.1| Exonuclease III [Streptococcus thermophilus ND03]
Length = 275
Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 25/141 (17%)
Query: 1 MLSQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----------------F 42
+L +Q W +K+AD ++ P + GD+N I + F
Sbjct: 139 LLERQI-WDEKYADYLAELDAQKPVLATGDYNVAHKEIDLANPSSNRRSPGFTDEERAGF 197
Query: 43 WQKMDPDGLLIRFPQE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
++ + + +R+K+S +L N + +
Sbjct: 198 TNLLNKGFIDTYRHLNGDVTGAYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVIKSN 256
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
+D+ + H P+ +E D
Sbjct: 257 MIDSGDRQ--DHTPIVLEIDL 275
>gi|255323939|ref|ZP_05365065.1| exodeoxyribonuclease III [Corynebacterium tuberculostearicum SK141]
gi|255299119|gb|EET78410.1| exodeoxyribonuclease III [Corynebacterium tuberculostearicum SK141]
Length = 305
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 20/83 (24%)
Query: 37 GDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ D P+E R ++ + D +
Sbjct: 223 EPWAPAAEPQWFDVARRLHPEEDGPYTWWTYRGQAFNNNAGWRIDYQAATRPMLERAQRT 282
Query: 97 DQSDLDTRRSKLSTHCPLTIEYD 119
T + S H PL +EY
Sbjct: 283 WVDKAPTVEQRWSDHSPLLVEYR 305
>gi|221194501|ref|ZP_03567558.1| endonuclease/exonuclease/phosphatase family protein [Atopobium
rimae ATCC 49626]
gi|221185405|gb|EEE17795.1| endonuclease/exonuclease/phosphatase family protein [Atopobium
rimae ATCC 49626]
Length = 377
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 37/131 (28%), Gaps = 15/131 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRK--------INSIGDTDDFWQKMDPD--- 49
M ++Q L++ Q+ G + GD+N + D + D D
Sbjct: 246 MRAKQLAMLREVLTQERAKGNYVIAGGDWNHALAGSLSLYPSDQQVPDWVAELKDSDLPE 305
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
G + + + +++ ++ + + S
Sbjct: 306 GFSVVKADNLADVPSCRGDDIPYTKGHTYTTTVDGWIVSDNVKARAENIDTGFAY----S 361
Query: 110 THCPLTIEYDF 120
H P+ + +
Sbjct: 362 DHNPVLLRFTL 372
>gi|55379934|ref|YP_137784.1| hypothetical protein rrnAC3397 [Haloarcula marismortui ATCC 43049]
gi|55232659|gb|AAV48078.1| unknown [Haloarcula marismortui ATCC 43049]
Length = 277
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 1/99 (1%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P V+ GDFN + ++ L+ T D +
Sbjct: 177 RDAPAVVMGDFNCVVGEPAYERAEGHELPDGRRLVDTRNTATVTHGPTTSRTDFHD-LLP 235
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + ++ + S H P+ ++
Sbjct: 236 EMGIDHVFVSEDVAVDTRAVIADRDDDHYGSDHLPVVVD 274
>gi|16263840|ref|NP_436632.1| hypothetical protein SM_b20092 [Sinorhizobium meliloti 1021]
gi|15139964|emb|CAC48492.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti 1021]
Length = 252
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 31/118 (26%), Gaps = 16/118 (13%)
Query: 4 QQGEWLKK--WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W + V+AGD N S +++ LL
Sbjct: 143 RQATALLGPGWLGGMAQGDAHVVLAGDLNATGRSTAYR-LLARQLSDAQLLTGVKPRPTF 201
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + L+ + S RS S H PL E D
Sbjct: 202 PS------------RLPLLRIDHVLVGKGIEVASCRVHGSTLARS-ASDHLPLLAELD 246
>gi|46127109|ref|XP_388108.1| hypothetical protein FG07932.1 [Gibberella zeae PH-1]
Length = 309
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 7/106 (6%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+P I GD N + D ++ + +
Sbjct: 193 DNVPVFIGGDLNSSPDEPAYKHLASAMNDVKSIIPLA----KRFGHSSYTYTGFTVSPSD 248
Query: 79 DRDNKNFLI--DNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYDFE 121
D D + + + S+ ++L +S H P+ ++
Sbjct: 249 DMDLDHIFVKDTSGLQFKSFAVLNNLYEDGVFISDHRPVVVDLRLN 294
>gi|317504528|ref|ZP_07962503.1| endonuclease/exonuclease/phosphatase [Prevotella salivae DSM 15606]
gi|315664350|gb|EFV04042.1| endonuclease/exonuclease/phosphatase [Prevotella salivae DSM 15606]
Length = 283
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 29/123 (23%), Gaps = 10/123 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + I ++ GDFN F Q
Sbjct: 167 RESAHLILNQIKA-IAKNNHVILTGDFNVDQTD-EIYKIFSDSGLLRDCYANAKQRMAPI 224
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR----RSKLSTHCPLTIEY 118
+ D + + N F+I Y R +S H P+ ++
Sbjct: 225 GTWNDYMQDYRD----MARIDHIFVSNDFNIEHYGIFTNSYWLGKTRRNISDHYPVMVKL 280
Query: 119 DFE 121
+
Sbjct: 281 QMK 283
>gi|84625383|ref|YP_452755.1| hypothetical protein XOO_3726 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84369323|dbj|BAE70481.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 319
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ IP V+ GDFN + D + + +++ N + +D
Sbjct: 222 ATLPADIPVVVTGDFNSDPDQGTYRTLTAVLGDARAHVAKPQGPEKTFQNFTTQPTRRID 281
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + + D + S H P+ +++ +
Sbjct: 282 WILFR----------GLTPTRFSTLDARSGGILPSDHYPVLAAFEWPQ 319
>gi|325287411|ref|YP_004263201.1| Endonuclease/exonuclease/phosphatase [Cellulophaga lytica DSM 7489]
gi|324322865|gb|ADY30330.1| Endonuclease/exonuclease/phosphatase [Cellulophaga lytica DSM 7489]
Length = 279
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 12/115 (10%), Positives = 25/115 (21%), Gaps = 7/115 (6%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + P ++ GDFN + T +
Sbjct: 168 KNSAKLIVEKIKNLNTKNYPVILMGDFNVTPTTEAITTIT-NYIPDSYTNSLTTPYGPKG 226
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ ++D N + D +S H P+
Sbjct: 227 TF------NGFTNRILDHRIDYVFAKNLNVLSVKVIDDRLDNNKHISDHLPVLAT 275
>gi|268315822|ref|YP_003289541.1| Endonuclease/exonuclease/phosphatase [Rhodothermus marinus DSM
4252]
gi|262333356|gb|ACY47153.1| Endonuclease/exonuclease/phosphatase [Rhodothermus marinus DSM
4252]
Length = 338
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 15/129 (11%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKM--------DPDGLLI 53
Q E +++ ++++ G + GDFN S+ D + + PD L
Sbjct: 207 QAEVIRRLVERELAAGRAVAVLGDFNDYDESVLDLNGHRPITRTLALVKAAGPGPDDDLY 266
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRD---NKNFLIDNSFSIVSYDQSDLDTRRSK-LS 109
E + D+ V + + L+ + + + ++
Sbjct: 267 NVMAEVPQHDRFTVFYDADEDWQVEWPELAAIDHVLLSPRLRARLREVHYVQAYDPRTVT 326
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 327 DHFPIVVTL 335
>gi|255530398|ref|YP_003090770.1| endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
gi|255343382|gb|ACU02708.1| Endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
Length = 370
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 37/119 (31%), Gaps = 21/119 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
S+Q + +K +PF+IAGDFN S ++M Q
Sbjct: 272 SEQVDIMKAHIKT---CELPFIIAGDFNDTPASYAV-----KQMTKSLKNTFKEQGTGFG 323
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + +F +++Y +KLS H P+ +
Sbjct: 324 KTYNGKFPNFQ--------IDYIATTQNFDVMNYRII-----EAKLSDHFPVRSDLRLN 369
>gi|188994745|ref|YP_001928997.1| hypothetical protein PGN_0881 [Porphyromonas gingivalis ATCC 33277]
gi|188594425|dbj|BAG33400.1| conserved hypothetical protein [Porphyromonas gingivalis ATCC
33277]
Length = 375
Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 27/117 (23%), Gaps = 19/117 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + + ++ GDFN S D +
Sbjct: 278 QADSVSHYI--RCSESEHVIVCGDFNDTPISYARHKIASGLKD-------AYSDTGRGPG 328
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + L + F + + S H P+ F+
Sbjct: 329 FTFNQGAFK------VRIDHILYSSGFLAYNCTVD----KSVHASDHFPVWCYLVFK 375
>gi|270295842|ref|ZP_06202042.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270273246|gb|EFA19108.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 287
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 1/104 (0%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
++ +P V+ GDFN S +P+ L +
Sbjct: 185 ELSGNLPVVVTGDFNASPESDVIKHVT-DPSNPEHLTDARQASAIVYGPAWSFHDFGKIP 243
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + N ++ Y + LS H P+ + +
Sbjct: 244 YDKRPLIDYVFVRNGLKVLRYGVLAETENNAFLSDHAPILVTVE 287
>gi|288942589|ref|YP_003444829.1| endonuclease/exonuclease/phosphatase [Allochromatium vinosum DSM
180]
gi|288897961|gb|ADC63797.1| Endonuclease/exonuclease/phosphatase [Allochromatium vinosum DSM
180]
Length = 255
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 22/119 (18%)
Query: 6 GEWLK-KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
L+ + + +T V+ GDFN NS G + + + E ++ +
Sbjct: 150 ARRLQLDYLSRLAQTYPYLVLMGDFNCGCNSKGLRNMVRR-----SGMRGLDCELKTFPS 204
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
R+ + L+ +V+ D LS H P+++ + G
Sbjct: 205 WRPRHN-----------LDHILVSRPIEVVAARVLDYA-----LSDHLPISMRIELPVG 247
>gi|170736096|ref|YP_001777356.1| endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
MC0-3]
gi|169818284|gb|ACA92866.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
MC0-3]
Length = 620
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 31/132 (23%), Gaps = 22/132 (16%)
Query: 11 KWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
W ++ GD N + L+ + V +
Sbjct: 479 DWLATSPTGIAADGVLLIGDLNSYAKEDPLRTLEARGY---ANLVVRFVGDAAYSYVFRG 535
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTRRSKLSTH 111
+LD+ + + F ++ D+ + S H
Sbjct: 536 EAGNLDHALATPALAARVKAVRFWHINADEPVVLQPVPDYKTSAQRSAYYAPDAYRSSDH 595
Query: 112 CPLTIEYDFEKG 123
P+ I+ +
Sbjct: 596 DPVVIDVALDDA 607
>gi|116691907|ref|YP_837440.1| endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
HI2424]
gi|116649907|gb|ABK10547.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
HI2424]
Length = 599
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 31/132 (23%), Gaps = 22/132 (16%)
Query: 11 KWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
W ++ GD N + L+ + V +
Sbjct: 458 DWLATSPTGIAADGVLLIGDLNSYAKEDPLRTLEARGY---ANLVVRFVGDAAYSYVFRG 514
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTRRSKLSTH 111
+LD+ + + F ++ D+ + S H
Sbjct: 515 EAGNLDHALATPALAARVKAVRFWHINADEPVVLQPVPDYKTSAQRSAYYAPDAYRSSDH 574
Query: 112 CPLTIEYDFEKG 123
P+ I+ +
Sbjct: 575 DPVVIDVALDDA 586
>gi|107026896|ref|YP_624407.1| endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia AU
1054]
gi|105896270|gb|ABF79434.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia AU
1054]
Length = 620
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 31/132 (23%), Gaps = 22/132 (16%)
Query: 11 KWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
W ++ GD N + L+ + V +
Sbjct: 479 DWLATSPTGIAADGVLLIGDLNSYAKEDPLRTLEARGY---ANLVVRFVGDAAYSYVFRG 535
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDTRRSKLSTH 111
+LD+ + + F ++ D+ + S H
Sbjct: 536 EAGNLDHALATPALAARVKAVRFWHINADEPVVLQPVPDYKTSAQRSAYYAPDAYRSSDH 595
Query: 112 CPLTIEYDFEKG 123
P+ I+ +
Sbjct: 596 DPVVIDVALDDA 607
>gi|326402657|ref|YP_004282738.1| exodeoxyribonuclease III [Acidiphilium multivorum AIU301]
gi|325049518|dbj|BAJ79856.1| exodeoxyribonuclease III [Acidiphilium multivorum AIU301]
Length = 267
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 10/124 (8%), Positives = 23/124 (18%), Gaps = 20/124 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDGLLIRFPQE 58
+ ++ GD N W+ + F +
Sbjct: 144 MNRPHRTMLVGDLNIAPLENDVWSHKQLLNVVSHTPPETEGLNAWRTEGFIDAIRHFVPD 203
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLSTHCPLTI 116
+ R + + + + S H P+ +
Sbjct: 204 DQKLFTWWSYRNRDWRASNRGRRLDHIWVSTDLIGNLARHAILQDARDWERGSDHVPVVL 263
Query: 117 EYDF 120
D
Sbjct: 264 ALDL 267
>gi|170739229|ref|YP_001767884.1| endonuclease/exonuclease/phosphatase [Methylobacterium sp. 4-46]
gi|168193503|gb|ACA15450.1| Endonuclease/exonuclease/phosphatase [Methylobacterium sp. 4-46]
Length = 257
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 13/103 (12%), Positives = 24/103 (23%), Gaps = 13/103 (12%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P V+ GD N S + + R + +
Sbjct: 156 PPLVLVGDLNAVPASAAYRR-LARHLRDAQRAAGV-----------PRRQRTFPSGFPLL 203
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + + + R S H PL ++ D
Sbjct: 204 RLDHVFVSEGIRVRHVEVVRGPLARV-ASDHLPLLVDLDLAPA 245
>gi|160890835|ref|ZP_02071838.1| hypothetical protein BACUNI_03280 [Bacteroides uniformis ATCC 8492]
gi|317479733|ref|ZP_07938855.1| endonuclease/Exonuclease/phosphatase [Bacteroides sp. 4_1_36]
gi|156859834|gb|EDO53265.1| hypothetical protein BACUNI_03280 [Bacteroides uniformis ATCC 8492]
gi|316904103|gb|EFV25935.1| endonuclease/Exonuclease/phosphatase [Bacteroides sp. 4_1_36]
Length = 287
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 1/104 (0%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
++ +P V+ GDFN S +P+ L +
Sbjct: 185 ELSGNLPVVVTGDFNASPESDVIKHVT-DPSNPEHLTDARQASAIVYGPAWSFHDFGKIP 243
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + N ++ Y + LS H P+ + +
Sbjct: 244 YDKRPLIDYVFVRNGLKVLRYGVLAETENNAFLSDHAPILVTVE 287
>gi|28493652|ref|NP_787813.1| exodeoxyribonuclease [Tropheryma whipplei str. Twist]
gi|28572845|ref|NP_789625.1| exodeoxyribonuclease [Tropheryma whipplei TW08/27]
gi|28410978|emb|CAD67363.1| putative exodeoxyribonuclease [Tropheryma whipplei TW08/27]
gi|28476694|gb|AAO44782.1| putative exodeoxyribonuclease [Tropheryma whipplei str. Twist]
Length = 281
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 13/143 (9%), Positives = 32/143 (22%), Gaps = 30/143 (20%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------ 48
+ ++K +K V GDFN ++ +
Sbjct: 140 QAVEKRMKSLVKEEFALV-TGDFNVGHTTLDIKNWRGNLDKSGFLPEERAYLDALVGNES 198
Query: 49 -----------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
++R + + + +
Sbjct: 199 DKEYNAGAGQGWIDVVRKIKGGIDGPYTWWSMRGNAFDNDTGWRIDYQFATQRLKALWVA 258
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+ + + H P+ ++YDF
Sbjct: 259 IDRQKSYAQRWTDHAPVVVKYDF 281
>gi|118086197|ref|XP_418838.2| PREDICTED: similar to KIAA1706 protein [Gallus gallus]
Length = 558
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 10/116 (8%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ +K +I GDFN+ +S D ++ P + + S
Sbjct: 423 LQETLKGEKDVIILGDFNQAPDSSD-HDILRKE----KFHHLVPSNTFTNISTKNPQGSK 477
Query: 73 LDYFVIDRDNKNFLIDNSFSIVS-----YDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + + +++V D + S HCP+ E+ EK
Sbjct: 478 SLDNMWISRSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASDHCPVLAEFYMEKD 533
>gi|229495737|ref|ZP_04389465.1| endonuclease/exonuclease/phosphatase [Porphyromonas endodontalis
ATCC 35406]
gi|229317311|gb|EEN83216.1| endonuclease/exonuclease/phosphatase [Porphyromonas endodontalis
ATCC 35406]
Length = 319
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 34/122 (27%), Gaps = 7/122 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ-------KMDPDGLLIRFPQE 58
+WL WA +I GDFN + + F + + +
Sbjct: 198 AQWLSSWAKDINAYHQNLIILGDFNIEARGDLLAETFLSEGLYIPEGLQSKEVSRSIFND 257
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + N S+ + + D + + LS H PL E+
Sbjct: 258 TKFYDQIAWFNGSNGQPKLSLEFVRGGSYDFVATALKNRGLTKQKLSFMLSDHYPLWAEF 317
Query: 119 DF 120
Sbjct: 318 KL 319
>gi|254448412|ref|ZP_05061873.1| sphingomyelinase C [gamma proteobacterium HTCC5015]
gi|198262025|gb|EDY86309.1| sphingomyelinase C [gamma proteobacterium HTCC5015]
Length = 348
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 24/140 (17%)
Query: 5 QGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL----------- 52
Q + +++W D + I P ++ GDFN + + D Q+ +
Sbjct: 208 QLDEMRQWIDNRAISAADPVILTGDFNVEHSRNDHLADMLQRSNSQISFPDPSIGSYSAL 267
Query: 53 -IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK---- 107
Q + +LDY V D ++ ++ D
Sbjct: 268 DNLMTQANAYYYEYSQSYNDTLDYVVTRTDYLLPIVSADMQVIRLKADDSWYWDYMENIN 327
Query: 108 -------LSTHCPLTIEYDF 120
LS H P+ + +
Sbjct: 328 STGMHSELSDHYPVVATFRY 347
>gi|86141714|ref|ZP_01060238.1| hypothetical protein MED217_01245 [Leeuwenhoekiella blandensis
MED217]
gi|85831277|gb|EAQ49733.1| hypothetical protein MED217_01245 [Leeuwenhoekiella blandensis
MED217]
Length = 279
Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats.
Identities = 12/111 (10%), Positives = 28/111 (25%), Gaps = 8/111 (7%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ +P ++GD N + +S ++D L
Sbjct: 174 IKELNPKNLPAFVSGDLNLEPDSAPI-AVLKTELDDTYELAPNGAFGPKGT-----FNGF 227
Query: 73 LDYFVIDRDNKNFLI--DNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ R N+ ++ + S H P+ + +
Sbjct: 228 KFTEPVTRRIDYIFQVKSNTSKVLKHAILSDSKDLHYPSDHLPVYVLIALK 278
>gi|310790575|gb|EFQ26108.1| endonuclease/Exonuclease/phosphatase [Glomerella graminicola
M1.001]
Length = 300
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 6/125 (4%)
Query: 3 SQQGEWL----KKWAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ 57
+ + L ++W K ++AGDFN + + + P+
Sbjct: 168 EESAKLLLRIAREWGKGANGKPPTAVLLAGDFNSTPEDNAYKTMVAPESGMVDVSTQVPE 227
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTI 116
EK + + + D + D + +I ++ S+ LS H P+
Sbjct: 228 EKRYGNKLTYTSFNEPDEEPLRIDFLFVKDPSPVTIKTFGVLSNKFDDDVYLSDHRPVVA 287
Query: 117 EYDFE 121
+ +
Sbjct: 288 DIEIP 292
>gi|162147600|ref|YP_001602061.1| exodeoxyribonuclease III protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209542233|ref|YP_002274462.1| exodeoxyribonuclease III Xth [Gluconacetobacter diazotrophicus PAl
5]
gi|161786177|emb|CAP55759.1| putative exodeoxyribonuclease III protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209529910|gb|ACI49847.1| exodeoxyribonuclease III Xth [Gluconacetobacter diazotrophicus PAl
5]
Length = 270
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 31/121 (25%), Gaps = 20/121 (16%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTD------------------DFWQKMDPDGLLIRF-PQE 58
+T ++ GD N WQ + F P +
Sbjct: 149 RTSHRTILVGDLNIAPLEQDVWSHKQLLNVVSHTPPEVTRLMAWQACGFVDAMRHFVPPD 208
Query: 59 KESTCNVIKRNKSSL-DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
++ RN+ D+ D + ++ S H P+ ++
Sbjct: 209 EKLYTWWSYRNRDWKASNRGRRLDHVWITPDLTAALKDMTVLREARDWPTTSDHVPVAMD 268
Query: 118 Y 118
+
Sbjct: 269 F 269
>gi|154757658|gb|AAI51788.1| DNASE1L3 protein [Bos taurus]
Length = 295
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 6/124 (4%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D ++ F+ GDFN + + ++ D + ++E
Sbjct: 163 REIDELADVYTDVKRRWNAENFIFMGDFNAGCSYVPKKAWKDIRLRTDPKFVWLIGDQED 222
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYD 119
T N + + ++ N ++ S + + ++ + L S H P+ E+
Sbjct: 223 TTVKNSTNCAYDRIVLRGQNIVNSVVPQSNLVFDFQKAYRLSESKALDVSDHFPV--EFK 280
Query: 120 FEKG 123
+
Sbjct: 281 LQSS 284
>gi|299142059|ref|ZP_07035193.1| AP endonuclease domain protein [Prevotella oris C735]
gi|298576521|gb|EFI48393.1| AP endonuclease domain protein [Prevotella oris C735]
Length = 368
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 19/114 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ + + ++ GDFN S + + GL F
Sbjct: 268 QADAVARYISKH--SDRSMIVCGDFNDSPIS------YARHTIAKGLTDCFIATGNGLGV 319
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + S H P+
Sbjct: 320 SYH-------NGGMYVRIDHIMCSKDWQPYGCKVDRSIGE----SDHYPILCWL 362
>gi|192289967|ref|YP_001990572.1| 5'-nucleotidase [Rhodopseudomonas palustris TIE-1]
gi|192283716|gb|ACF00097.1| 5'-Nucleotidase domain protein [Rhodopseudomonas palustris TIE-1]
Length = 2775
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 37/125 (29%), Gaps = 20/125 (16%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
D ++ GDFN + ++ G +E + V +L
Sbjct: 850 DPTGSKDPDVMLLGDFNGYAQEHS-----TKIIETAGFENLHSRETGAYSYVFDGQTGTL 904
Query: 74 DYFVIDRDN--------KNFLIDNSFSIVSYDQSD-------LDTRRSKLSTHCPLTIEY 118
DY + + + ++ Y+ + +++S H P+ +
Sbjct: 905 DYAFTNGSLGSQVSGVTTWHINADEADVLDYNTDYGRDTSIFDGSAPTRVSDHDPVVVGL 964
Query: 119 DFEKG 123
+ K
Sbjct: 965 NLGKS 969
>gi|322373458|ref|ZP_08047994.1| exodeoxyribonuclease III [Streptococcus sp. C150]
gi|321278500|gb|EFX55569.1| exodeoxyribonuclease III [Streptococcus sp. C150]
Length = 275
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 25/141 (17%)
Query: 1 MLSQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----------------- 41
+L +Q W +K+AD ++ P + GD+N I +
Sbjct: 139 LLERQI-WDEKYADYLAELDAQKPVLATGDYNVAHKEIDLANPSSNRRSPGFTDEERTGF 197
Query: 42 --FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
K D + +R+K+S +L N +
Sbjct: 198 TNLLTKGFTDTYRHLNGDVTGAYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVTKSD 256
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
+D+ + H P+ +E D
Sbjct: 257 MIDSGDRQ--DHTPIVLEIDL 275
>gi|271967547|ref|YP_003341743.1| metal-dependent hydrolase-like protein [Streptosporangium roseum
DSM 43021]
gi|270510722|gb|ACZ89000.1| Metal-dependent hydrolase-like protein [Streptosporangium roseum
DSM 43021]
Length = 617
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 18/114 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E L + G P V+AGD N + D W+ + GL + +
Sbjct: 518 QVEQLGRIVRDAAAGGRPVVVAGDLNLEPA-----DPAWEVLMGSGLTDPIAPVRPFSTI 572
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + L+ F+ D+ S H P+ +
Sbjct: 573 PTPGGPA--------QQIDHVLVTPGFTGRDQANVDVP-----HSDHRPIAVTL 613
>gi|257125417|ref|YP_003163531.1| endonuclease/exonuclease/phosphatase [Leptotrichia buccalis
C-1013-b]
gi|257049356|gb|ACV38540.1| Endonuclease/exonuclease/phosphatase [Leptotrichia buccalis
C-1013-b]
Length = 248
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 23/121 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L + P ++AGDFN + + +
Sbjct: 148 QKQIVQLYNFVK---NCKKPVIVAGDFNVFWGEEEIEMFLQASNLRNINIR------KDP 198
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
K + L + SY+ +++LS H P+ ++++ K
Sbjct: 199 TFPSWNPKR---------ELDFILCSKEIKVKSYEVI-----QTQLSDHLPILVDFEIVK 244
Query: 123 G 123
Sbjct: 245 S 245
>gi|196006481|ref|XP_002113107.1| hypothetical protein TRIADDRAFT_25440 [Trichoplax adhaerens]
gi|190585148|gb|EDV25217.1| hypothetical protein TRIADDRAFT_25440 [Trichoplax adhaerens]
Length = 273
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 40/119 (33%), Gaps = 5/119 (4%)
Query: 4 QQGEWLKK-WADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D + G ++ GDFN + I ++ + ++ +
Sbjct: 154 EETDALADVYDDATTRFGESNAILMGDFNADCSYISSSEWSYVRLWTQSRFNWVI-GSNA 212
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPLTIEY 118
N + + ++ + + + +D + +S H P+ +E
Sbjct: 213 DTTTKSTNCAYDRLVLAGSRMQSDYVSGTAKVFRFDSEYGLSYDETTAVSDHYPVEMEL 271
>gi|307308162|ref|ZP_07587877.1| Endonuclease/exonuclease/phosphatase [Sinorhizobium meliloti
BL225C]
gi|306901365|gb|EFN31970.1| Endonuclease/exonuclease/phosphatase [Sinorhizobium meliloti
BL225C]
Length = 265
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 30/118 (25%), Gaps = 16/118 (13%)
Query: 4 QQGEWLKK--WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W V+AGD N S +++ LL
Sbjct: 152 RQATALLGPGWLGGMAHGDAHVVLAGDLNATGRSTAYR-LLARQLSDAQLLTGAKPRPTF 210
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + LI + S RS S H PL E D
Sbjct: 211 PS------------RLPLLRIDHVLIGKGIEVASCRVHGSTLARS-ASDHLPLLAELD 255
>gi|269217062|ref|ZP_06160916.1| endonuclease/exonuclease/phosphatase family protein [Slackia exigua
ATCC 700122]
gi|269129199|gb|EEZ60284.1| endonuclease/exonuclease/phosphatase family protein [Slackia exigua
ATCC 700122]
Length = 372
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 36/133 (27%), Gaps = 15/133 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRK--------INSIGDTDDFWQKMDPD--- 49
+ +QQ L + ++ + G + GD+N + D
Sbjct: 244 VRAQQLAMLNQVLKEEYEAGNYVIAGGDWNHALCGSLEMYPSEQQVPSWVATLSSEDLAE 303
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
G + + F++ ++ + + + + S
Sbjct: 304 GYSVVEASNLADVPTCRGDDIPYQKGVTYTTTIDGFIVSDNVTAAAENIDT----GFEFS 359
Query: 110 THCPLTIEYDFEK 122
H P+ + + +
Sbjct: 360 DHNPVKLTFSLNE 372
>gi|227541836|ref|ZP_03971885.1| possible exodeoxyribonuclease III [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227182279|gb|EEI63251.1| possible exodeoxyribonuclease III [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 294
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 18/70 (25%)
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R E R K+ D + S D ++ S
Sbjct: 224 DVARRLHPEDAPYTWWTYRGKAFDTNAGWRIDVQAATKAMLERAESTRVDRADEWGTRWS 283
Query: 110 THCPLTIEYD 119
H PL + Y
Sbjct: 284 DHAPLVVSYR 293
>gi|304320634|ref|YP_003854277.1| extracellular nuclease [Parvularcula bermudensis HTCC2503]
gi|303299536|gb|ADM09135.1| extracellular nuclease [Parvularcula bermudensis HTCC2503]
Length = 1471
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/144 (11%), Positives = 35/144 (24%), Gaps = 24/144 (16%)
Query: 6 GEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFP---- 56
L W D +I GD N + + + +
Sbjct: 958 AIALDAWLATDPTSSGDADVMILGDLNAYAMEDPIAYLKNAGFTDLVDSLADTDYTYGFP 1017
Query: 57 ------QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS---- 106
+ + + ++ + + + ++ YD T +
Sbjct: 1018 VDLGIVPQAQGYGTLDYAFANASLLSQVVDAAVWHINADEPPVIDYDLDFKPTEQEAYFD 1077
Query: 107 -----KLSTHCPLTIEYDFEKGNV 125
+ S H P+ I + NV
Sbjct: 1078 PSTPFRSSDHDPVLIGLNLTSSNV 1101
>gi|223933529|ref|ZP_03625511.1| LPXTG-motif cell wall anchor domain protein [Streptococcus suis
89/1591]
gi|223897789|gb|EEF64168.1| LPXTG-motif cell wall anchor domain protein [Streptococcus suis
89/1591]
Length = 651
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 35/120 (29%), Gaps = 9/120 (7%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + + V+ GDFN + M L+ +
Sbjct: 437 AQIIADFTKAGLAQNPNANIVMLGDFNDYEFTKTIEILETGGM---ANLVSRHDASDRFS 493
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
N SLD ++ + + + + S + S H PL ++ D K
Sbjct: 494 YFYNGNNQSLDNMLVSTNLLDRYAFDMVHVNSA----FMEEHGRASDHDPLLVQLDVTKA 549
>gi|253756379|ref|YP_003029519.1| surface-anchored DNA nuclease [Streptococcus suis BM407]
gi|251818843|emb|CAZ56686.1| surface-anchored DNA nuclease [Streptococcus suis BM407]
Length = 1039
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 9/120 (7%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + + V+ GDFN + M L+ +
Sbjct: 825 AQTIADFTKAGLAQNPNANIVMLGDFNDYEFTKTIEILEAGGM---ANLVSRHDASDRFS 881
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
N SLD ++ + + + S + S H PL ++ D K
Sbjct: 882 YFYNGNNQSLDNMLVSTNLFERYAFDMVHVNSA----FMEEHGRASDHDPLLVQLDVTKA 937
>gi|284034607|ref|YP_003384538.1| endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
gi|283813900|gb|ADB35739.1| Endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
Length = 266
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 25/129 (19%), Gaps = 14/129 (10%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------DDFWQKMDPDGLLIRFP 56
+Q L + + + P VI GDFN +S +
Sbjct: 134 EQVRALAGFVAEHSRAAHPPVITGDFNALPDSDELRLFSGVRTAPAVPGLVLIDAWEYAE 193
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLI------DNSFSIVSYDQSDLDTRRSKLST 110
+ + N F + S
Sbjct: 194 PGQPAAT-WDTANPHVAATFTPSARVDYIHVGVPGRNGAGHVTAVRRTGAAPVDGVWPSD 252
Query: 111 HCPLTIEYD 119
H + E
Sbjct: 253 HAAVVAELR 261
>gi|194365350|ref|YP_002027960.1| endonuclease/exonuclease/phosphatase [Stenotrophomonas maltophilia
R551-3]
gi|194348154|gb|ACF51277.1| Endonuclease/exonuclease/phosphatase [Stenotrophomonas maltophilia
R551-3]
Length = 284
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 10/107 (9%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ +P V+ GDFN + F + + ++ PQ + D
Sbjct: 186 ASLPADLPVVLTGDFNSEPGG-DTYKAFSRVLQDTRPQVKAPQGP---------RLTFHD 235
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ ++++ F S+ D S H PL +E D+
Sbjct: 236 FTGKATSQLDWVLVRGFHARSFLTDDRRIDGVLPSDHFPLVVELDWP 282
>gi|28493411|ref|NP_787572.1| exodeoxyribonuclease III [Tropheryma whipplei str. Twist]
gi|28476452|gb|AAO44541.1| exodeoxyribonuclease III [Tropheryma whipplei str. Twist]
Length = 285
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 33/135 (24%), Gaps = 22/135 (16%)
Query: 7 EWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDP 48
+ L + GIP ++ GDFN D +Q +
Sbjct: 141 KALASHVRTVLRRTPGIPLMLVGDFNIVTCEQDTADPDFQLPNDITCSGPEREAFQAILD 200
Query: 49 DGLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--- 104
G+ + + + + + D + + + R
Sbjct: 201 TGMFDLIRPFAPIGFTSWSYQRQRFQNNQGLRIDFMLGSDSVQRRTIWGEIDRVQRRHLF 260
Query: 105 RSKLSTHCPLTIEYD 119
S H PL D
Sbjct: 261 GLTPSDHAPLVSVID 275
>gi|312863077|ref|ZP_07723315.1| exodeoxyribonuclease III [Streptococcus vestibularis F0396]
gi|322516276|ref|ZP_08069206.1| exodeoxyribonuclease [Streptococcus vestibularis ATCC 49124]
gi|311100613|gb|EFQ58818.1| exodeoxyribonuclease III [Streptococcus vestibularis F0396]
gi|322125249|gb|EFX96622.1| exodeoxyribonuclease [Streptococcus vestibularis ATCC 49124]
Length = 275
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 25/141 (17%)
Query: 1 MLSQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----------------- 41
+L +Q W +K+AD K+ P + GD+N I +
Sbjct: 139 LLERQI-WDEKYADYLAKLDAQKPVLATGDYNVAHKEIDLANPSSNRRSPGFTDEERAGF 197
Query: 42 --FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
K D + +R+K+S +L N +
Sbjct: 198 TNLLAKGFTDTYRHLNGDVTGAYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVTKSD 256
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
+++ + H P+ +E D
Sbjct: 257 MINSGDRQ--DHTPIVLEIDL 275
>gi|224367710|ref|YP_002601873.1| hypothetical protein HRM2_05950 [Desulfobacterium autotrophicum
HRM2]
gi|223690426|gb|ACN13709.1| conserved hypothetical protein [Desulfobacterium autotrophicum
HRM2]
Length = 253
Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 24/117 (20%), Gaps = 15/117 (12%)
Query: 5 QGEWLKKWADQKIK---TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + T +P VI GDFN +
Sbjct: 147 SAGLVVDFLSEFSPGSLTDLPTVITGDFNSIPGGAAHRVFLDNGFEDAFENAHA------ 200
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
L + ++ S H P+ +E+
Sbjct: 201 --YTFHGFTG----KDRGGHIDWILYRGGITPLNQKIVRERFSGHFPSDHFPVLVEF 251
>gi|330982163|gb|EGH80266.1| exonuclease III [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 114
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 10/106 (9%), Positives = 20/106 (18%), Gaps = 4/106 (3%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDY 75
++ G + + + E R++ D
Sbjct: 10 ADNAKRWLKTGKCSFLPEERE-WMERLKNWGLVDSFRHLYPEVVDLFSWFDYRSRGFEDE 68
Query: 76 FVIDRDNKNFLID--NSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ I K S H P+ +E
Sbjct: 69 PKRGLRIDLIMTSTGLQPRIKEAGVDYDLRAMEKPSDHAPIWLELS 114
>gi|315607053|ref|ZP_07882057.1| AP endonuclease domain protein [Prevotella buccae ATCC 33574]
gi|315251107|gb|EFU31092.1| AP endonuclease domain protein [Prevotella buccae ATCC 33574]
Length = 365
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 18/110 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + + I +P ++ GDFN S + L +
Sbjct: 264 QVDSVAAYVARHIGR-MPVILCGDFNESPISYAHYR------MENLLTDCYVSAGNGPGW 316
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
R + N +++ D + K S H P+
Sbjct: 317 SYHR-------SGMYVRIDNIFCSDNWKPYQCRVDD----KIKESDHYPI 355
>gi|325919446|ref|ZP_08181471.1| putative extracellular nuclease [Xanthomonas gardneri ATCC 19865]
gi|325550066|gb|EGD20895.1| putative extracellular nuclease [Xanthomonas gardneri ATCC 19865]
Length = 1110
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 40/152 (26%), Gaps = 32/152 (21%)
Query: 3 SQQGEW--LKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD----------- 47
+Q + L + Q++ ++ GDFN + G D
Sbjct: 687 KRQAQAEYLARLLQTRQQLDPAEQVLVMGDFNAFEFNDGYVDAMGTVTGRPAPDAQTVVS 746
Query: 48 ---------PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
L F +S N SLD+ + + S S+
Sbjct: 747 GDGVDLVNPDYTDLTWFNTPDQSYSYAFDGNVQSLDHIIANEALMRAPNIASLSVGHASI 806
Query: 99 SDLDTRRS--------KLSTHCPLTIEYDFEK 122
+ + +LS H P + K
Sbjct: 807 NADFPGTARNDANTPTRLSDHDPTVVLLRMSK 838
>gi|281424726|ref|ZP_06255639.1| AP endonuclease domain protein [Prevotella oris F0302]
gi|281401096|gb|EFB31927.1| AP endonuclease domain protein [Prevotella oris F0302]
Length = 363
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/114 (10%), Positives = 27/114 (23%), Gaps = 19/114 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ + + ++ GDFN S + + GL F
Sbjct: 263 QADAVARYISKH--SDRSMIVCGDFNDSPIS------YARHTIAKGLTDCFIATGNGLGV 314
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + S H P+
Sbjct: 315 SYH-------NGGMYVRIDHIMCSKDWQPYGCKVDRSIGE----SDHYPILCWL 357
>gi|78046033|ref|YP_362208.1| putative secreted protein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78034463|emb|CAJ22108.1| putative secreted protein [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 1193
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 40/152 (26%), Gaps = 32/152 (21%)
Query: 3 SQQGEW--LKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD----------- 47
+Q + L + Q++ ++ GDFN + G D
Sbjct: 772 KRQAQAEYLARLLQTRQQLNPDEKVLVMGDFNAFEFNDGYVDAVGTVTGKPAPDAQTVVG 831
Query: 48 ---------PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
L F +S N SLD+ + + S S+
Sbjct: 832 GDGTDLVNPDYTDLTWFNTPDQSYSYAFDGNVQSLDHILANDALMRAPQIASLSVGHARI 891
Query: 99 SDLDTRRS--------KLSTHCPLTIEYDFEK 122
+ + +LS H P + K
Sbjct: 892 NADFPGTARNDANTPTRLSDHDPTVVLLRMTK 923
>gi|329889440|ref|ZP_08267783.1| endonuclease/Exonuclease/phosphatase family protein [Brevundimonas
diminuta ATCC 11568]
gi|328844741|gb|EGF94305.1| endonuclease/Exonuclease/phosphatase family protein [Brevundimonas
diminuta ATCC 11568]
Length = 251
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 16/122 (13%)
Query: 3 SQQGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
Q L + W + G P ++ GDFN + +++D + +
Sbjct: 137 RLQVAALVGRDWLGDPMCDG-PTILTGDFNATSITRP-YQALTRRLDDAQRRLGLKPSIK 194
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + R+ S H PL I+++
Sbjct: 195 TFPSSFP-----------AIRIDHCFVSREIRVTGARTPSSPLARA-ASDHLPLIIDFEI 242
Query: 121 EK 122
++
Sbjct: 243 DQ 244
>gi|237716270|ref|ZP_04546751.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262407875|ref|ZP_06084423.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294807694|ref|ZP_06766487.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
xylanisolvens SD CC 1b]
gi|229443917|gb|EEO49708.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262354683|gb|EEZ03775.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294445130|gb|EFG13804.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
xylanisolvens SD CC 1b]
gi|295084435|emb|CBK65958.1| Metal-dependent hydrolase [Bacteroides xylanisolvens XB1A]
Length = 365
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 31/113 (27%), Gaps = 20/113 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + LK+ + P ++ GDFN +S K+ F
Sbjct: 271 QADLLKQLIA---ASPYPTLVCGDFNSLPSSYVYHTIKGDKLQDG-----FQTSGHGYMY 322
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
K K L + Y DL+ S H P+ +
Sbjct: 323 TFKYFK-------HLLRIDYILHSPELNSTDYFSPDLNY-----SDHNPVVMR 363
>gi|28572478|ref|NP_789258.1| exodeoxyribonuclease III [Tropheryma whipplei TW08/27]
gi|28410610|emb|CAD66996.1| exodeoxyribonuclease III [Tropheryma whipplei TW08/27]
Length = 279
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 33/135 (24%), Gaps = 22/135 (16%)
Query: 7 EWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDP 48
+ L + GIP ++ GDFN D +Q +
Sbjct: 135 KALASHVRTVLRRTPGIPLMLVGDFNIVTCEQDTADPDFQLPNDITCSGPEREAFQAILD 194
Query: 49 DGLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--- 104
G+ + + + + + D + + + R
Sbjct: 195 TGMFDLIRPFAPIGFTSWSYQRQRFQNNQGLRIDFMLGSDSVQRRTIWGEIDRVQRRHLF 254
Query: 105 RSKLSTHCPLTIEYD 119
S H PL D
Sbjct: 255 GLTPSDHAPLVSVID 269
>gi|241766798|ref|ZP_04764623.1| exodeoxyribonuclease III Xth [Acidovorax delafieldii 2AN]
gi|241362815|gb|EER58576.1| exodeoxyribonuclease III Xth [Acidovorax delafieldii 2AN]
Length = 271
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 33/128 (25%), Gaps = 29/128 (22%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------------MDPDGLL 52
K F++ GD N I + + +
Sbjct: 146 KGEREFILCGDINIAHQQIDLKNWRSNQKNSGFLPEERAWMTKLLHTTDPGGGLVDVYRQ 205
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
++ + R ++ + D + + + K S H
Sbjct: 206 LQPTATDTAYTWWSNRGQAYANNVGWRLDYHLATPALAALARAEHI----YKDEKFSDHA 261
Query: 113 PLTIEYDF 120
P+T++Y+F
Sbjct: 262 PITVDYEF 269
>gi|167752898|ref|ZP_02425025.1| hypothetical protein ALIPUT_01160 [Alistipes putredinis DSM 17216]
gi|167659967|gb|EDS04097.1| hypothetical protein ALIPUT_01160 [Alistipes putredinis DSM 17216]
Length = 385
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 22/96 (22%), Gaps = 17/96 (17%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN S + L F + + +
Sbjct: 303 IVCGDFNDTPMSYTYR------VMAQDLDDAFRASGKGYSYTFRGF-------MDVLRID 349
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + Y LS H P+ +
Sbjct: 350 YVLYSEDLECLDYQV----LYDVDLSDHYPVVVRLR 381
>gi|85717081|ref|ZP_01048042.1| exodeoxyribonuclease III [Nitrobacter sp. Nb-311A]
gi|85696119|gb|EAQ34016.1| exodeoxyribonuclease III [Nitrobacter sp. Nb-311A]
Length = 257
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/129 (10%), Positives = 27/129 (20%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGL 51
L K A + P ++ G++N + F +
Sbjct: 127 RLTKHAARLQGQDHPALLVGNYNVAPTDLDMCSTESWTNDARVQQTQRKAFASLLANGWT 186
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLS 109
+ +FL+ + ++ S
Sbjct: 187 DALRDVYRHERVYTFWTYGRDRYEKDHAFRLDHFLLSKAVASRLIKAGVDGDGRSEKNAS 246
Query: 110 THCPLTIEY 118
H P I+
Sbjct: 247 DHAPAWIKL 255
>gi|260888950|ref|ZP_05900213.1| hypothetical protein GCWU000323_00109 [Leptotrichia hofstadii
F0254]
gi|260861397|gb|EEX75897.1| putative endonuclease/exonuclease/phosphatase [Leptotrichia
hofstadii F0254]
Length = 244
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 37/117 (31%), Gaps = 23/117 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L + P ++AGDFN + + + + +
Sbjct: 148 QKQIVQLYNFVK---NCKKPVIVAGDFNVFWGEEEIEMFLQASNLQNINIRK----EPTF 200
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + L + SY+ +++LS H P+ ++++
Sbjct: 201 PSWNPKR-----------ELDFILCSKEIKVKSYEVI-----QTQLSDHLPILVDFE 241
>gi|228476989|ref|ZP_04061627.1| exodeoxyribonuclease III [Streptococcus salivarius SK126]
gi|228251008|gb|EEK10179.1| exodeoxyribonuclease III [Streptococcus salivarius SK126]
Length = 275
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 25/141 (17%)
Query: 1 MLSQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----------------- 41
+L +Q W +K+AD ++ P + GD+N I +
Sbjct: 139 LLERQI-WDEKYADYLAELDAQKPVLATGDYNVAHKEIDLANPSSNRRSPGFTDEERAGF 197
Query: 42 --FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
K D + +R+K+S +L N +
Sbjct: 198 TNLLAKGFTDTYRHLNGDVTGAYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVTKSD 256
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
+D+ + H P+ +E D
Sbjct: 257 MIDSGDRQ--DHTPIVLEIDL 275
>gi|116251825|ref|YP_767663.1| hypothetical protein RL2065 [Rhizobium leguminosarum bv. viciae
3841]
gi|115256473|emb|CAK07557.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 267
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/116 (12%), Positives = 29/116 (25%), Gaps = 16/116 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L ++ ++ GDFN +S + + GL
Sbjct: 167 EKQAAALVGLIERVWPGDEGLIVCGDFNVLPDS-----ATFAILGRLGLSDLVTGSGLVD 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K L+ + ++ +S H L ++
Sbjct: 222 TRTSYYLKQGRF-------ADYMLVTPGVKVAKFEVVKAPE----VSDHRALLLDI 266
>gi|330843681|ref|XP_003293776.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
gi|325075853|gb|EGC29694.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
Length = 249
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/116 (10%), Positives = 26/116 (22%), Gaps = 19/116 (16%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIRFPQEK 59
++ P V GD N I + F ++ +
Sbjct: 136 ELDKKKPVVWCGDLNVAHTEIDLKNPKTNTKSAGFTIQERTSFGDFLNKGFIDSYRHYNP 195
Query: 60 -ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ + F++ + ++ S HCP+
Sbjct: 196 GKEGAFTFWTYMGGARAKNVGWRLDYFVVSK--RYIDSIKTPFIRSTVMGSDHCPI 249
>gi|319899428|ref|YP_004159525.1| exodeoxyribonuclease III [Bartonella clarridgeiae 73]
gi|319403396|emb|CBI76964.1| exodeoxyribonuclease III [Bartonella clarridgeiae 73]
Length = 272
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 32/134 (23%), Gaps = 22/134 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIR-- 54
+ G+ ++ GD N G +
Sbjct: 139 IRADQEDGLESLLLGDLNIAPLPEDVWSHKQLLKVVSHTPIETERLQALCREGGWVDLMR 198
Query: 55 --FPQEKESTCNVIKRNKSSL-DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
FP + R + D+ + + + S+ S H
Sbjct: 199 MKFPVPIKLYTWWSYRARDWALADRGRRLDHVWSSPNLAAFVKDLVIFRDARGWSQPSDH 258
Query: 112 CPLTIEYDFEKGNV 125
P+ +DF GN+
Sbjct: 259 VPVQTLFDF-SGNL 271
>gi|296863686|pdb|3MPR|A Chain A, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE FA
Protein From Bacteroides Thetaiotaomicron, Northeast
Struct Genomics Consortium Target Btr318a
gi|296863687|pdb|3MPR|B Chain B, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE FA
Protein From Bacteroides Thetaiotaomicron, Northeast
Struct Genomics Consortium Target Btr318a
gi|296863688|pdb|3MPR|C Chain C, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE FA
Protein From Bacteroides Thetaiotaomicron, Northeast
Struct Genomics Consortium Target Btr318a
gi|296863689|pdb|3MPR|D Chain D, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE FA
Protein From Bacteroides Thetaiotaomicron, Northeast
Struct Genomics Consortium Target Btr318a
Length = 298
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 31/127 (24%), Gaps = 29/127 (22%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+P ++ GDFN + + D + + +
Sbjct: 169 KNLPAILTGDFNVDQTHQSYDAFVSKGVLCDSYEKCDYRYALNGT-----FNNFDPNSFT 223
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSK------------------------LSTHCPL 114
+ + + SF + Y R + S H P+
Sbjct: 224 ESRIDHIFVSPSFHVKRYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPV 283
Query: 115 TIEYDFE 121
+E F+
Sbjct: 284 KVELVFD 290
>gi|171060686|ref|YP_001793035.1| endonuclease/exonuclease/phosphatase [Leptothrix cholodnii SP-6]
gi|170778131|gb|ACB36270.1| Endonuclease/exonuclease/phosphatase [Leptothrix cholodnii SP-6]
Length = 276
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 36/116 (31%), Gaps = 15/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E L + D KI G V+AGDFN + + GL P +
Sbjct: 174 RQAERLGDYIDAKIPRGALVVVAGDFNDWGERLDP------IIGAAGLQRAAPPDA---- 223
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R + + + +++S H PL +E +
Sbjct: 224 ----RRGPLTFPSRMPLFALDRVYTRGLRCADTFVPRGAA-WARMSDHLPLVVELE 274
>gi|307544063|ref|YP_003896542.1| hypothetical protein HELO_1474 [Halomonas elongata DSM 2581]
gi|307216087|emb|CBV41357.1| K07004 [Halomonas elongata DSM 2581]
Length = 1608
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 37/136 (27%), Gaps = 28/136 (20%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L W D ++ GDFN N ++ DG + +
Sbjct: 1471 EAAKQLADWVASDPTDSGDSDTLLIGDFNSYANEDPI-----TALEDDGYTLL----DDD 1521
Query: 62 TCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDLDTR 104
SLD+ + + + + Y+ + D
Sbjct: 1522 YSYSYDGQWGSLDHALASESMNAQVTGTTTWHINADEPTSFDYNTEYKSDDQVDAYYDDG 1581
Query: 105 RSKLSTHCPLTIEYDF 120
+ S H P+ + D
Sbjct: 1582 PYRASDHDPIVVGVDL 1597
>gi|42519716|ref|NP_965646.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
gi|41584005|gb|AAS09612.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
Length = 261
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 34/133 (25%), Gaps = 24/133 (18%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKIN-------SIGDTDDFWQKMDPD--------- 49
+ + + + + P +I GD + + ++
Sbjct: 130 AQTFRNYVTKLM-QYKPVIIGGDMSVAHERIDLAEPDDNHHRPGFTGIERKEFSELLNAG 188
Query: 50 --GLLIRFPQEKESTCNVIKRNK-SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
F ++ R+K + + D + + +
Sbjct: 189 FIDTFRYFHPDEAKYTYWSYRDKEARAENLGWRLDYFLVSNNLEDRLTNAKILSNIMG-- 246
Query: 107 KLSTHCPLTIEYD 119
S HCP+ ++ D
Sbjct: 247 --SDHCPIELDVD 257
>gi|327189443|gb|EGE56605.1| putative metal-dependent hydrolase protein [Rhizobium etli
CNPAF512]
Length = 239
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 31/119 (26%), Gaps = 16/119 (13%)
Query: 4 QQGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W ++ +P V+ GDFN +S D P+
Sbjct: 134 RQMTTLLNSGWLRGAMEEPLPCVLCGDFNAIPSSATYRLVARSLKDAQLGGTAAPRATFP 193
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + + S H PL E F
Sbjct: 194 SRYP-------------LMRLDHIFVTDDLVVKRAAVL-QNRLTKVASDHLPLFAEISF 238
>gi|308801717|ref|XP_003078172.1| ARP protein (ISS) [Ostreococcus tauri]
Length = 460
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/150 (10%), Positives = 28/150 (18%), Gaps = 30/150 (20%)
Query: 2 LSQQGEWLKKW---ADQKI---KTGIPFVIAGDFNRKINSIGDTDDFWQKM--------- 46
L + +K+W + P + GD N + +
Sbjct: 310 LKRLDYRIKEWERDMKAHLKALDAKKPVIYIGDLNVAHLDADIWNVTASHIKKSAGTTPQ 369
Query: 47 ------------DPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI 93
F + R + + D
Sbjct: 370 ERGAFGVMLEENGLHDSFRFFHGDAAGWFSYWSVRAGNRPFNKGLRLDYAVASKRLFDGD 429
Query: 94 VS--YDQSDLDTRRSKLSTHCPLTIEYDFE 121
S + S H P+ I +
Sbjct: 430 DSGVEVVDAFILDQVTGSDHAPVGITLAIK 459
>gi|116056623|emb|CAL52912.1| ARP protein (ISS) [Ostreococcus tauri]
Length = 466
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/150 (10%), Positives = 28/150 (18%), Gaps = 30/150 (20%)
Query: 2 LSQQGEWLKKW---ADQKI---KTGIPFVIAGDFNRKINSIGDTDDFWQKM--------- 46
L + +K+W + P + GD N + +
Sbjct: 316 LKRLDYRIKEWERDMKAHLKALDAKKPVIYIGDLNVAHLDADIWNVTASHIKKSAGTTPQ 375
Query: 47 ------------DPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI 93
F + R + + D
Sbjct: 376 ERGAFGVMLEENGLHDSFRFFHGDAAGWFSYWSVRAGNRPFNKGLRLDYAVASKRLFDGD 435
Query: 94 VS--YDQSDLDTRRSKLSTHCPLTIEYDFE 121
S + S H P+ I +
Sbjct: 436 DSGVEVVDAFILDQVTGSDHAPVGITLAIK 465
>gi|311114963|ref|YP_003986184.1| exodeoxyribonuclease III [Gardnerella vaginalis ATCC 14019]
gi|310946457|gb|ADP39161.1| exodeoxyribonuclease III [Gardnerella vaginalis ATCC 14019]
Length = 290
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 24/139 (17%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------ 48
ML + GE L+ A G ++ GDFN + + +
Sbjct: 155 MLKRLGE-LRDIAA---SGGNQAILCGDFNIAHTPLDIKNAKANEKSAGFLPEERAYIDR 210
Query: 49 --------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
D + + + +R K+ + D + + + + +
Sbjct: 211 WINEYEFVDVMRMLAGDIQGPYTWWSQRGKAFDNNVGWRLDYQFATPEIAETACGFVIDR 270
Query: 101 LDTRRSKLSTHCPLTIEYD 119
+ S+ S H L I+Y+
Sbjct: 271 AQSYDSRWSDHAALNIKYN 289
>gi|169838781|ref|ZP_02871969.1| Endonuclease/exonuclease/phosphatase [candidate division TM7
single-cell isolate TM7a]
Length = 245
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 23/117 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L P ++AGDFN +M ++ ++
Sbjct: 146 QKQIVQLYDLVK---NCKKPVIVAGDFNVFWGEEEI------EMFLQASDLKNINTRKDP 196
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
K + L + SY+ +++LS H P+ I++D
Sbjct: 197 TFPSWNPKR---------ELDFILCSKEIKVNSYEVI-----QTQLSDHLPILIDFD 239
>gi|34541082|ref|NP_905561.1| AP endonuclease domain-containing protein [Porphyromonas gingivalis
W83]
gi|34397397|gb|AAQ66460.1| AP endonuclease domain protein [Porphyromonas gingivalis W83]
Length = 310
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 27/117 (23%), Gaps = 19/117 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + + ++ GDFN S D +
Sbjct: 213 QADSVSHYI--RCSESEHVIVCGDFNDTPISYARHKIASGLKD-------AYSDTGRGPG 263
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + L + F + + S H P+ F+
Sbjct: 264 FTFNQGAFK------VRIDHILYSSGFLAYNCTVD----KSVHASDHFPVWCYLVFK 310
>gi|294085378|ref|YP_003552138.1| exodeoxyribonuclease III Xth [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292664953|gb|ADE40054.1| exodeoxyribonuclease III Xth [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 259
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 29/122 (23%), Gaps = 21/122 (17%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDGLLIRFPQ 57
V+ GD N + + D + F
Sbjct: 138 NRPENAVLVGDLNIAPLAEDVWSTKQLLKVVSHTPVETDGLKALMAKGSWHDPVRAHFGD 197
Query: 58 EKESTCNVIKRNKSSL-DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+++ R++ + D+ D + ++ + K S H P I
Sbjct: 198 DEQIYSWWSYRSRDWQVNNRGRRLDHIWVSTDLANAVSKAEILTDYRNAEKPSDHVPTII 257
Query: 117 EY 118
Sbjct: 258 TL 259
>gi|289671150|ref|ZP_06492225.1| putative secreted protein [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 801
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 40/152 (26%), Gaps = 32/152 (21%)
Query: 3 SQQGEW--LKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD----------- 47
+Q + L + Q++ ++ GDFN + G D
Sbjct: 378 KRQAQAEYLARLLQTRQQLNPDEKVLVMGDFNAFEFNDGYVDAMGTVTGKPAPDAQTVVG 437
Query: 48 ---------PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
L F +S N SLD+ + + S S+
Sbjct: 438 GDGADLVNPDYTDLTWFNTPDQSYSYAFDGNVQSLDHILANEALMRLPQIASLSVGHSRI 497
Query: 99 SDLDTRRS--------KLSTHCPLTIEYDFEK 122
+ + +LS H P + K
Sbjct: 498 NADFPGTARNDANTPTRLSDHDPTVVLLRMSK 529
>gi|319759037|gb|ADV70979.1| DNA nuclease [Streptococcus suis JS14]
Length = 1039
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 9/120 (7%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + + V+ GDFN + M L+ +
Sbjct: 825 AQTIADFTKAGLAQNPNANIVMLGDFNDYEFTKTIEILEAGGM---ANLVSRHDASDRFS 881
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
N SLD ++ + + + S + S H PL ++ D K
Sbjct: 882 YFYNGNNQSLDNMLVSTNLLERYAFDMVHVNSA----FMEEHGRASDHDPLLVQLDVTKA 937
>gi|253752620|ref|YP_003025761.1| surface-anchored DNA nuclease [Streptococcus suis SC84]
gi|253754446|ref|YP_003027587.1| surface-anchored DNA nuclease [Streptococcus suis P1/7]
gi|251816909|emb|CAZ52558.1| surface-anchored DNA nuclease [Streptococcus suis SC84]
gi|251820692|emb|CAR47454.1| surface-anchored DNA nuclease [Streptococcus suis P1/7]
Length = 1039
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 9/120 (7%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + + V+ GDFN + M L+ +
Sbjct: 825 AQTIADFTKAGLAQNPNANIVMLGDFNDYEFTKTIEILEAGGM---ANLVSRHDASDRFS 881
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
N SLD ++ + + + S + S H PL ++ D K
Sbjct: 882 YFYNGNNQSLDNMLVSTNLLERYAFDMVHVNSA----FMEEHGRASDHDPLLVQLDVTKA 937
>gi|146319622|ref|YP_001199334.1| DNA nuclease [Streptococcus suis 05ZYH33]
gi|146321820|ref|YP_001201531.1| DNA nuclease [Streptococcus suis 98HAH33]
gi|145690428|gb|ABP90934.1| DNA nuclease [Streptococcus suis 05ZYH33]
gi|145692626|gb|ABP93131.1| DNA nuclease [Streptococcus suis 98HAH33]
gi|292559239|gb|ADE32240.1| DNA nuclease [Streptococcus suis GZ1]
Length = 1059
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 9/120 (7%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + + V+ GDFN + M L+ +
Sbjct: 845 AQTIADFTKAGLAQNPNANIVMLGDFNDYEFTKTIEILEAGGM---ANLVSRHDASDRFS 901
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
N SLD ++ + + + S + S H PL ++ D K
Sbjct: 902 YFYNGNNQSLDNMLVSTNLLERYAFDMVHVNSA----FMEEHGRASDHDPLLVQLDVTKA 957
>gi|158335038|ref|YP_001516210.1| 5'-nucleotidase/2',3'-cyclic phosphodiesterase [Acaryochloris marina
MBIC11017]
gi|158305279|gb|ABW26896.1| 5'-nucleotidase/2',3'-cyclic phosphodiesterase, putative
[Acaryochloris marina MBIC11017]
Length = 2593
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 9/126 (7%)
Query: 5 QGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---K 59
Q + + + D ++ ++AGD N + + D L PQ
Sbjct: 1583 QAQAVNDFVDAQLADNPDANIIVAGDLNTFDTTNDLLEILPGVGDEQVLTSLVPQAVETD 1642
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS-IVSYDQSDLDT---RRSKLSTHCPLT 115
++ + N LD+ + + + D S H P+
Sbjct: 1643 DAYTFIFDGNAQVLDHQFATNALAAGAEFDIVHVNNDFVRDDGQAIFDDSIVASDHEPIV 1702
Query: 116 IEYDFE 121
+ E
Sbjct: 1703 GRFTLE 1708
>gi|114321996|ref|YP_743679.1| endonuclease/exonuclease/phosphatase [Alkalilimnicola ehrlichii
MLHE-1]
gi|114228390|gb|ABI58189.1| Endonuclease/exonuclease/phosphatase [Alkalilimnicola ehrlichii
MLHE-1]
Length = 276
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 39/123 (31%), Gaps = 22/123 (17%)
Query: 2 LSQQGEWLK-KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
LS++ + + I ++ GDFN S + + L+ +
Sbjct: 170 LSRRARATQLAYLADLINEHRHVIVMGDFNCHSRSPE-----FTTLVDRTELLEPVHDLH 224
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + L+ +S + D LS H P+T++
Sbjct: 225 TFPSWKPQRN-----------IDHILLSSSLEVGHVRVLDYP-----LSDHLPITMDISL 268
Query: 121 EKG 123
+G
Sbjct: 269 PEG 271
>gi|262381640|ref|ZP_06074778.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262296817|gb|EEY84747.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 353
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 29/114 (25%), Gaps = 21/114 (18%)
Query: 3 SQQGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + Q + G P +I GDFN S L F
Sbjct: 254 KRATQA--DYIRQMLDAGEGPVIICGDFNDTPASYTYRTVK------GDLTDGFRDCGSG 305
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ F V+YD +LD S H P+
Sbjct: 306 FGYTF-------RQLKRIFRIDYIIYSPDFKGVTYDSPNLDY-----SDHKPVV 347
>gi|150007859|ref|YP_001302602.1| hypothetical protein BDI_1219 [Parabacteroides distasonis ATCC
8503]
gi|255013440|ref|ZP_05285566.1| hypothetical protein B2_06000 [Bacteroides sp. 2_1_7]
gi|298376780|ref|ZP_06986735.1| transmembrane endonuclease/exonuclease/phosphatase [Bacteroides sp.
3_1_19]
gi|149936283|gb|ABR42980.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
gi|298266658|gb|EFI08316.1| transmembrane endonuclease/exonuclease/phosphatase [Bacteroides sp.
3_1_19]
Length = 353
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 29/114 (25%), Gaps = 21/114 (18%)
Query: 3 SQQGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + Q + G P +I GDFN S L F
Sbjct: 254 KRATQA--DYIRQMLDAGEGPVIICGDFNDTPASYTYRTVK------GDLTDGFRDCGSG 305
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ F V+YD +LD S H P+
Sbjct: 306 FGYTF-------RQLKRIFRIDYIIYSPDFKGVTYDSPNLDY-----SDHKPVV 347
>gi|295394280|ref|ZP_06804510.1| endonuclease/exonuclease/phosphatase [Brevibacterium mcbrellneri
ATCC 49030]
gi|294972864|gb|EFG48709.1| endonuclease/exonuclease/phosphatase [Brevibacterium mcbrellneri
ATCC 49030]
Length = 843
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 21/134 (15%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + + +AD K + GDFN Q+ G + + +
Sbjct: 715 KQAKAVVTFADAMKKKAQTDNVFLLGDFNSYTQEDP-----MQEFYKAGYVDAGEKFEAE 769
Query: 62 TCNVIKRNKSSLDYFVIDRDN-----------KNFLIDNSFSIVSYDQSDLDTRR---SK 107
V SLD+ + + N + Y+ + + +
Sbjct: 770 PTYVFGGQLGSLDHVLANDAAAKGLKGAYTWTINSRESVALEYSRYNYNVTNFYDPSPFR 829
Query: 108 LSTHCPLTIEYDFE 121
S H P +++D +
Sbjct: 830 SSDHDPTIVDFDLK 843
>gi|332186411|ref|ZP_08388155.1| endonuclease/Exonuclease/phosphatase family protein [Sphingomonas
sp. S17]
gi|332013394|gb|EGI55455.1| endonuclease/Exonuclease/phosphatase family protein [Sphingomonas
sp. S17]
Length = 276
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 10/104 (9%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ G+P ++AGD N + ++ D R + + + +DY
Sbjct: 177 LAKGLPVILAGDMNARPDTAAYRRFAGALTDCWLGAKRREGPEMTFHDFTGTPDRRIDYL 236
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ F + ++ S H P+ F
Sbjct: 237 FLR----------GFRADAIATDTWHRGKTYPSDHFPVRATLSF 270
>gi|15836769|ref|NP_297457.1| exodeoxyribonuclease [Xylella fastidiosa 9a5c]
gi|9104958|gb|AAF82977.1|AE003870_3 exodeoxyribonuclease [Xylella fastidiosa 9a5c]
Length = 266
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 37/144 (25%), Gaps = 33/144 (22%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD------------------------ 41
WL+ + + +G +V+ GD+N +++ +
Sbjct: 127 MRWLRPILCEWLLSGRDYVLCGDWNIVRSALDIRNWKSNQKNSGCLPLERDWLNGLCADS 186
Query: 42 -----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
Q + E R + ++ D + +
Sbjct: 187 LHEVNAAQGRGWVDTYRVLYPQGEDYTWWSNRGAARVNNVGWRIDYQFVSPGLRERVSRC 246
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
R + S H P T+EY
Sbjct: 247 AI----YREQRFSDHAPYTVEYVL 266
>gi|325923708|ref|ZP_08185327.1| metal-dependent hydrolase [Xanthomonas gardneri ATCC 19865]
gi|325545794|gb|EGD17029.1| metal-dependent hydrolase [Xanthomonas gardneri ATCC 19865]
Length = 251
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 34/120 (28%), Gaps = 11/120 (9%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + IP V+ GDFN ++ D + +++
Sbjct: 143 EHSARVILSRI-ATLPADIPVVVTGDFNSDPDNGTYRTLTAVLGDARAHATKRQGPEKT- 200
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
D+ ++++ + + + S H P+ E+ + +
Sbjct: 201 ---------FQDFTTHPTRRIDWILFRGLTPTRFSTLETRPGGILPSDHYPVLAEFAWPQ 251
>gi|319404823|emb|CBI78424.1| exodeoxyribonuclease III [Bartonella rochalimae ATCC BAA-1498]
Length = 272
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 28/135 (20%), Gaps = 24/135 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIR-- 54
G+ ++ GD N G +
Sbjct: 139 IRADQGDGLESLLLGDLNIAPLPEDVWSHKQLLKVVSHTPIETERLQALCCEGGWVDLMR 198
Query: 55 --FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLST 110
FP + R + R + + + S
Sbjct: 199 MKFPIPTKLYTWWSYRARDWAL-SDRGRRLDHIWSSPNLVPFVKELAIFRDTRGWPQPSD 257
Query: 111 HCPLTIEYDFEKGNV 125
H P+ +DF GN+
Sbjct: 258 HVPVQTLFDF-SGNL 271
>gi|328767146|gb|EGF77197.1| hypothetical protein BATDEDRAFT_20862 [Batrachochytrium
dendrobatidis JAM81]
Length = 394
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 20/129 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLL 52
LKK+ + P + +GD N I F + ++
Sbjct: 244 LKKFMGELQSK-KPVIWSGDLNVAHTEIDLARPATNTKSAGFTPEEREDFGNLLTDLDMV 302
Query: 53 IRFP--QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + + + F++ + + +D+ + S
Sbjct: 303 DSFRLKHPTATGMYSYYSFRHNSRANNVGWRLDYFVVSKALQDDIIE-ADIRSEIYGASD 361
Query: 111 HCPLTIEYD 119
H P+ + +
Sbjct: 362 HVPILLLLN 370
>gi|227540901|ref|ZP_03970950.1| possible exodeoxyribonuclease III [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227183161|gb|EEI64133.1| possible exodeoxyribonuclease III [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 233
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 28/114 (24%), Gaps = 14/114 (12%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------WQKMDPDGLLIRFPQEKESTCNV 65
+ + GDFN + D+ + +
Sbjct: 125 ARYAAPSADLAMGDFNVIPGAEDVYDESPFETHVTEPERAAFEYLTDVLPVVSPTGYTYW 184
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + D + V D R +K S H P+ EY+
Sbjct: 185 DYQARRFDRDQGMRIDFHLSTTPATSGFV-----DRAERAAKSSDHAPVICEYE 233
>gi|58271540|ref|XP_572926.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus neoformans
var. neoformans JEC21]
gi|134115276|ref|XP_773936.1| hypothetical protein CNBH3880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256564|gb|EAL19289.1| hypothetical protein CNBH3880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229185|gb|AAW45619.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 654
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 26/131 (19%), Gaps = 22/131 (16%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIG-------------DTDDFWQKMDPDGLLIR 54
L++ G ++ GD N + + + +D
Sbjct: 188 ALQERVQLLQAAGREVMLVGDINIVRQPMDSGEGPVRSSAEQHYSHPARRILDDWCAPKG 247
Query: 55 FPQEKESTCNVI-------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ K L L +
Sbjct: 248 PMIDVVRESWPQRDDMFTCWNQKLDARSANYGSRIDYVLCTPGLRPWIKGGDILP--KVY 305
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 306 GSDHCPVYVDL 316
>gi|308234996|ref|ZP_07665733.1| putative exodeoxyribonuclease III [Gardnerella vaginalis ATCC
14018]
Length = 287
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 24/139 (17%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------ 48
ML + GE L+ A G ++ GDFN + + +
Sbjct: 152 MLKRLGE-LRDIAA---SGGNQAILCGDFNIAHTPLDIKNAKANEKSAGFLPEERAYIDR 207
Query: 49 --------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
D + + + +R K+ + D + + + + +
Sbjct: 208 WINEYEFVDVMRMLAGDIQGPYTWWSQRGKAFDNNVGWRLDYQFATPEIAETACGFVIDR 267
Query: 101 LDTRRSKLSTHCPLTIEYD 119
+ S+ S H L I+Y+
Sbjct: 268 AQSYDSRWSDHAALNIKYN 286
>gi|326517565|dbj|BAK03701.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 296
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 34/142 (23%), Gaps = 27/142 (19%)
Query: 2 LSQQGEWLKKW------ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL---- 51
L + + W +K+++ P ++AGD N SI + + D
Sbjct: 159 LRRLVYRVDNWDPSFSDFVEKLESFKPVIVAGDLNCARQSIDIHNPAAKTEDAGFTEEER 218
Query: 52 -------------LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
Q ++ + FL S +
Sbjct: 219 ESFQINFDMRGFVDTFRKQHPKAVGYTFWGENQRCNNKGW--RLDYFLASGSI--IDRVH 274
Query: 99 SDLDTRRSKLSTHCPLTIEYDF 120
S H P+ +
Sbjct: 275 DSYILPDVTSSDHSPIGLVLKL 296
>gi|159127707|gb|EDP52822.1| endonuclease/exonuclease/phosphatase family protein [Aspergillus
fumigatus A1163]
Length = 606
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 32/117 (27%), Gaps = 7/117 (5%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + ++ + +++GDFN + + D + E
Sbjct: 492 QAKLVAEFTSSILAEDSTAKIIVSGDFNEFTFAQPLETFLAESGLEDLDEVAGIAATERY 551
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N LD+ + + + + + S H P +
Sbjct: 552 TYLYDMNCQQLDHMFVSPAL-----ATGAQMHHLHVNTWVSFDDQASDHDPTVALLN 603
>gi|70999964|ref|XP_754699.1| endonuclease/exonuclease/phosphatase family protein [Aspergillus
fumigatus Af293]
gi|66852336|gb|EAL92661.1| endonuclease/exonuclease/phosphatase family protein [Aspergillus
fumigatus Af293]
Length = 606
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 32/117 (27%), Gaps = 7/117 (5%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + ++ + +++GDFN + + D + E
Sbjct: 492 QAKLVAEFTSSILAEDSTAKIIVSGDFNEFTFAQPLETFLAESGLEDLDEVAGIAATERY 551
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N LD+ + + + + + S H P +
Sbjct: 552 TYLYDMNCQQLDHMFVSPAL-----ATGAQMHHLHVNTWVSFDDQASDHDPTVALLN 603
>gi|222085749|ref|YP_002544279.1| hypothetical protein Arad_2072 [Agrobacterium radiobacter K84]
gi|221723197|gb|ACM26353.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 277
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 29/117 (24%), Gaps = 16/117 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L Q V+ GDFN S ++ + GL
Sbjct: 177 QHQARALVDLIRQVWPGEERLVVCGDFNVLPGS-----VTFEALAALGLSDLITSRGHRD 231
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
K L+ +V++D +S H L ++
Sbjct: 232 TRTSHYRKEPRF-------ADYMLVTPMVEVVAFDAVAEPE----VSDHRALLLDLR 277
>gi|167521904|ref|XP_001745290.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776248|gb|EDQ89868.1| predicted protein [Monosiga brevicollis MX1]
Length = 263
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 38/142 (26%), Gaps = 29/142 (20%)
Query: 2 LSQQGEWLKKW-AD-----QKIKTGIPFVIAGDFNRKINSIGDTDD-------------- 41
L + L +W D ++++ P ++ GD N + +
Sbjct: 123 LKRLDYRLNEWNVDFLAYIRELEASKPVLVVGDLNVAHLDLDIYNAGHLVKSAGCTPQER 182
Query: 42 -FWQKMDPDGLLIRF----PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + G F P+ + R D + N+ +
Sbjct: 183 TAFTEFLDQGFTDTFRKLYPEHTGAFTYWSARTGGRQDSKG--LRLDYAVCSNAL--LEA 238
Query: 97 DQSDLDTRRSKLSTHCPLTIEY 118
+ S HCP+ I
Sbjct: 239 NSPLRCLDSVMGSDHCPIAIVL 260
>gi|85859313|ref|YP_461515.1| hypothetical protein SYN_02542 [Syntrophus aciditrophicus SB]
gi|85722404|gb|ABC77347.1| hypothetical membrane protein [Syntrophus aciditrophicus SB]
Length = 346
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/116 (12%), Positives = 30/116 (25%), Gaps = 16/116 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q ++++ I P +++GD N D + GL F + +
Sbjct: 238 QAATIREYL---IAERGPVILSGDLNA-----PDASLVCSTLRGAGLRDAFAEGGRGYGH 289
Query: 65 VIKRN---KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + + K S H P+ +
Sbjct: 290 TYGHFLLKNRLPWLRFSWMRIDHIMSNAQLKTRNCRVGT-----GKASDHRPVIAD 340
>gi|77555695|gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1621
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 7/104 (6%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE------KESTCNVIKRNKSSLDY 75
P+++AGDFN + S + + RN S
Sbjct: 377 PWLMAGDFNEILFSHEKQGGRMKAQSAMDEFRHALTDCGLDDLGFEGDAFTWRNHSHSQE 436
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + + + + + + + + S H P+ IE +
Sbjct: 437 GYIRERLDRAVANPEWRAM-FPAARVINGDPRHSDHRPVIIELE 479
>gi|186684269|ref|YP_001867465.1| endonuclease I [Nostoc punctiforme PCC 73102]
gi|186466721|gb|ACC82522.1| Endonuclease I [Nostoc punctiforme PCC 73102]
Length = 603
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 39/121 (32%), Gaps = 12/121 (9%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q E + ++ Q ++ ++ GD N +S+ ++ L +
Sbjct: 236 KQAEIVNEFVGQILEVDPQAKVIVLGDLNDLPDSLPLKTLKGNILEN---LTDSLPASDR 292
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-STHCPLTIEYDF 120
K N +D+ ++ + D ++ S+ S H P+ +
Sbjct: 293 FTFKFKGNPQLIDHLLVSENLSRVAQPK------IDIVHVNVGFSRPVSDHDPVIAAFTL 346
Query: 121 E 121
Sbjct: 347 P 347
>gi|227489312|ref|ZP_03919628.1| possible exodeoxyribonuclease III, exonuclease III [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227090685|gb|EEI25997.1| possible exodeoxyribonuclease III, exonuclease III [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 233
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 27/114 (23%), Gaps = 14/114 (12%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------WQKMDPDGLLIRFPQEKESTCNV 65
+ + GDFN D+ + +
Sbjct: 125 ARYAAPGADLAMGDFNVIPGPEDVYDESPFETHVTEPERAAFEYLTDVLPVVSPTGYTYW 184
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + D + V D R +K S H P+ EY+
Sbjct: 185 DYQARRFDRDQGMRIDFHLSTTPATSGFV-----DRAERAAKSSDHAPVICEYE 233
>gi|194291703|ref|YP_002007610.1| endonuclease/exonuclease/phosphatase [Cupriavidus taiwanensis LMG
19424]
gi|193225607|emb|CAQ71553.1| putative Endonuclease/exonuclease/phosphatase [Cupriavidus
taiwanensis LMG 19424]
Length = 614
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 34/133 (25%), Gaps = 21/133 (15%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + L +W ++ GD N + L+ +
Sbjct: 478 QAADNLARWLATAPTGVADAGVLVIGDLNSYAMEDPIRLLARRGYAD---LVARFAGPHA 534
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD----------------LDTRR 105
V LD+ + D ++ ++ D+
Sbjct: 535 YSYVYAAQAGYLDHVLGDATAAAHVVAVQAWHINADEPAALSYAPAPGSRAAPAFYAPDP 594
Query: 106 SKLSTHCPLTIEY 118
+ S H PL +++
Sbjct: 595 YRSSDHDPLVVDF 607
>gi|88854827|ref|ZP_01129493.1| probable 5'-nucleotidase precursor [marine actinobacterium
PHSC20C1]
gi|88815988|gb|EAR25844.1| probable 5'-nucleotidase precursor [marine actinobacterium
PHSC20C1]
Length = 1422
Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 30/128 (23%), Gaps = 16/128 (12%)
Query: 4 QQG---EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + L V+ GDFN
Sbjct: 492 EQATAVKALVDTISADSAKSDQVVLVGDFNSYSEEDPVQVFTSAGYVDT----LAASTDG 547
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------SKLSTH 111
SLD+ ++ + + D + ++ + + S H
Sbjct: 548 QYTYTFDGELGSLDHIIVSPSLADKVTDAAVWNINSPEWGDRGYAFGATEAGTVFRSSDH 607
Query: 112 CPLTIEYD 119
P++I
Sbjct: 608 DPISIGLS 615
>gi|301310113|ref|ZP_07216052.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
gi|300831687|gb|EFK62318.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
Length = 353
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 29/114 (25%), Gaps = 21/114 (18%)
Query: 3 SQQGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + Q + G P ++ GDFN S L F
Sbjct: 254 KRATQA--DYIRQMLDAGEGPVILCGDFNDTPASYTYRTVK------GDLTDGFRDCGSG 305
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ F V+YD +LD S H P+
Sbjct: 306 FGYTF-------RQLKRIFRIDYIIYSPDFKGVTYDSPNLDY-----SDHKPVV 347
>gi|86610191|ref|YP_478953.1| endonuclease/exonuclease/phosphatase family protein [Synechococcus
sp. JA-2-3B'a(2-13)]
gi|86558733|gb|ABD03690.1| endonuclease/exonuclease/phosphatase family protein [Synechococcus
sp. JA-2-3B'a(2-13)]
Length = 840
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 15/136 (11%), Positives = 34/136 (25%), Gaps = 26/136 (19%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L W T +I GD N S
Sbjct: 525 RAAQQLLSWLATNPTGSTDPDVLIMGDLNSYAMEDPIKTLEAGGFIN-------LNGPNS 577
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-----------------LDTR 104
+ SLD+ + + + + ++ ++ D+ +
Sbjct: 578 YSFSFQGQWGSLDHALANSSLRPQVTGSAKWHINADEPVSLDYTLSFKSPSQQSLFYASD 637
Query: 105 RSKLSTHCPLTIEYDF 120
+ S H P+ + +
Sbjct: 638 PFRSSDHDPVLVGLNL 653
>gi|256840117|ref|ZP_05545626.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256739047|gb|EEU52372.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 353
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 29/114 (25%), Gaps = 21/114 (18%)
Query: 3 SQQGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + Q + G P ++ GDFN S L F
Sbjct: 254 KRATQA--DYIRQMLDAGEGPVILCGDFNDTPASYTYRTVK------GDLTDGFRDCGSG 305
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ F V+YD +LD S H P+
Sbjct: 306 FGYTF-------RQLKRIFRIDYIIYSPDFKGVTYDSPNLDY-----SDHKPVV 347
>gi|49476204|ref|YP_034245.1| exodeoxyribonuclease III [Bartonella henselae str. Houston-1]
gi|49239012|emb|CAF28312.1| Exodeoxyribonuclease III [Bartonella henselae str. Houston-1]
Length = 269
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 26/131 (19%), Gaps = 23/131 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIR-- 54
G+ + GD N G +
Sbjct: 139 IQADQGDGVSSFLVGDLNIAPLPEDVWSHKQLLKVVSHTPIETERLQALCCQGGWVDLMR 198
Query: 55 --FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--QSDLDTRRSKLST 110
FP + R + R + + + ++ S
Sbjct: 199 MQFPVPTKLYTWWSYRARDWAL-ADRGRRLDHIWSSPDLTSFVAELSIFRHTRGWNQPSD 257
Query: 111 HCPLTIEYDFE 121
H P+ +DF
Sbjct: 258 HVPVQTVFDFS 268
>gi|298481016|ref|ZP_06999211.1| transmembrane endonuclease/exonuclease/phosphatase [Bacteroides sp.
D22]
gi|298273039|gb|EFI14605.1| transmembrane endonuclease/exonuclease/phosphatase [Bacteroides sp.
D22]
Length = 365
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 20/113 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + LK+ + P ++ GDFN +S K+ F +
Sbjct: 271 QADLLKQLIA---ASPYPTLVCGDFNSLPSSYVYHTIKGDKLQDG-----FQRSGHGYMY 322
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
K K L + Y DL+ S H P+ +
Sbjct: 323 TFKYFK-------HLLRIDYILHSPELNSTDYFSPDLNY-----SDHNPVVMR 363
>gi|308274774|emb|CBX31373.1| hypothetical protein N47_E48850 [uncultured Desulfobacterium sp.]
Length = 335
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 9/124 (7%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ +L K + PF++ GDFN + S + +
Sbjct: 192 KKSVIFLIKRIHARSYPD-PFILTGDFNARERSAPIQYLKGKSPLRIKTKLTVINPTPLV 250
Query: 63 CNVIKRNKSSL--------DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
R+ + + + +S ++ L ++ S H PL
Sbjct: 251 DTFRVRHPKNRNSVTFHGFRKYFFRFRLDYIFVPSSVRVLDAKIIQLRWKKCYPSDHFPL 310
Query: 115 TIEY 118
Sbjct: 311 FTHI 314
>gi|14861060|dbj|BAB62089.1| deoxyribonuclease I precursor [Cynops pyrrhogaster]
Length = 354
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 44/124 (35%), Gaps = 4/124 (3%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L W D Q+ +I GD+N + + ++ + L + E
Sbjct: 164 REVDALFDVWEDVQQRLLTQNILILGDYNADCKYVTNKHWPTIRLRHEPQLHWLISDDED 223
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPLTIEYD 119
T + + + + N + + + +Y ++ T +S H P+ ++
Sbjct: 224 TTVSTNTHCAYDRFVASGVEMLNAIFPETATAFNYHEAYGLTYEEAKDVSDHYPVEMQLR 283
Query: 120 FEKG 123
+
Sbjct: 284 LDSD 287
>gi|206562314|ref|YP_002233077.1| putative extracellular endonuclease/exonuclease/phosphatase family
protein [Burkholderia cenocepacia J2315]
gi|198038354|emb|CAR54309.1| putative extracellular endonuclease/exonuclease/phosphatase family
protein [Burkholderia cenocepacia J2315]
Length = 604
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 31/137 (22%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + W ++ GDFN + L+ +
Sbjct: 467 RAAAKVADWLAGNPTGVKSQGVLLIGDFNSYTYEDPIRALESRGY---RNLVARWIGANA 523
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-----------------LDTR 104
V LD+ + + + ++ D+
Sbjct: 524 YSYVYNGEAGYLDHALATLPLASHVKAVHEWHINADEPLALQYTLAYKSAEQQKTFYAAD 583
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ I+
Sbjct: 584 AYRSSDHDPVLIDIALP 600
>gi|300725857|ref|ZP_07059321.1| AP endonuclease domain protein [Prevotella bryantii B14]
gi|299776845|gb|EFI73391.1| AP endonuclease domain protein [Prevotella bryantii B14]
Length = 352
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/114 (11%), Positives = 32/114 (28%), Gaps = 19/114 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ + + ++ + ++ GDFN S + +D E
Sbjct: 252 EADAVSEFIEHHQ--HESIILCGDFNDGPISYTHHTIVKKLIDC-------YIESGFGPG 302
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ N + + + + + + KLS H P++
Sbjct: 303 ISYHKGGF------FVRIDNIMCTSDWEPFQCNVDN----KIKLSDHYPISCWL 346
>gi|240102422|ref|YP_002958731.1| Metal-dependent hydrolase [Thermococcus gammatolerans EJ3]
gi|239909976|gb|ACS32867.1| Metal-dependent hydrolase [Thermococcus gammatolerans EJ3]
Length = 584
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 34/117 (29%), Gaps = 17/117 (14%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E L K+A+ + + VIAGD N + N E+
Sbjct: 485 QAEELLKFAE---ASPVAQVIAGDTNAEPNERAIE-------ILTRDYRDAFPERPPYTF 534
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ +RN +D ID D +S H P+ +
Sbjct: 535 LWERN-GVVDKENIDYILLKNDWPAEVK------DDGCLCDVLVSDHRPVWAVIELP 584
>gi|209547425|ref|YP_002279343.1| endonuclease/exonuclease/phosphatase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209538669|gb|ACI58603.1| Endonuclease/exonuclease/phosphatase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 242
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 28/119 (23%), Gaps = 16/119 (13%)
Query: 4 QQGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W +P ++ GDFN +S D P+
Sbjct: 137 RQMTTLLNAGWLRGTADEPLPTILCGDFNAIPSSATYRLAARSLKDAQRAGNARPRATFP 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + S H PL E F
Sbjct: 197 ARYP-------------LMRLDHVFVTDDLIVKQATVL-ENRLARVASDHLPLLAEIAF 241
>gi|254249188|ref|ZP_04942508.1| hypothetical protein BCPG_04048 [Burkholderia cenocepacia PC184]
gi|124875689|gb|EAY65679.1| hypothetical protein BCPG_04048 [Burkholderia cenocepacia PC184]
Length = 604
Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 31/137 (22%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + W ++ GDFN + L+ +
Sbjct: 467 RAATKVADWLAGNPTGVKSQGVLLIGDFNSYTYEDPIRTLESRGYSN---LVARWIGANA 523
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-----------------LDTR 104
V LD+ + + + ++ D+
Sbjct: 524 YSYVYNGEAGYLDHALATLPLASHVKAVHEWHINADEPLALQYTLAYKSAEQQKTFYAAD 583
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ I+
Sbjct: 584 AYRSSDHDPVLIDIALP 600
>gi|330720429|gb|EGG98744.1| Endonuclease/exonuclease/phosphatase family protein [gamma
proteobacterium IMCC2047]
Length = 242
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 34/121 (28%), Gaps = 22/121 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L + + I VI GD N I E
Sbjct: 141 QLDQL-AYVKELIADHKHVVIMGDLNTCAEKILHLSPLRD-------AKFQSPEGAGNTY 192
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
R S+LD+ ++ D + LS H PL +E + G+
Sbjct: 193 PSWRPVSNLDHILVSPDL--------------RVKWAEVVPYALSDHLPLAVEIEMPSGH 238
Query: 125 V 125
+
Sbjct: 239 L 239
>gi|149029874|gb|EDL84986.1| deoxyribonuclease 1-like 1, isoform CRA_b [Rattus norvegicus]
Length = 286
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 30/104 (28%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ ++ GDFN S+ + + E T N +
Sbjct: 160 QRWQNENVILLGDFNADCASLAKKRLNSLLLRTKAGFHWVIPDGEDTTVRASTNCTYDRI 219
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + L + + ++S H P+ +E +
Sbjct: 220 VMHGQGCQKLLKAAATFDFPRRFQLTEEEALRVSDHYPVEVELN 263
>gi|146299325|ref|YP_001193916.1| endonuclease/exonuclease/phosphatase [Flavobacterium johnsoniae
UW101]
gi|146153743|gb|ABQ04597.1| Endonuclease/exonuclease/phosphatase [Flavobacterium johnsoniae
UW101]
Length = 279
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 29/109 (26%), Gaps = 8/109 (7%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ P + GDFN + + + + MD + + S
Sbjct: 177 MKELNTKNYPAFLMGDFNSEPETAQIAEIK-KVMDDTKDVSKEKPFGPSGT-----FNDF 230
Query: 73 LDYFVIDRDNKNFLIDNS--FSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ I + ++ + S H P+ IE D
Sbjct: 231 KHNEPVTLLLDYIFISKNSGLTVQKHAVLSDSKDLKYPSDHLPVFIEID 279
>gi|84662732|ref|NP_001014245.2| deoxyribonuclease-1-like 1 precursor [Rattus norvegicus]
gi|91206585|sp|Q2QDE7|DNSL1_RAT RecName: Full=Deoxyribonuclease-1-like 1; AltName: Full=DNase X;
AltName: Full=Deoxyribonuclease I-like 1; Short=DNase
I-like 1; Flags: Precursor
gi|73921496|gb|AAZ94278.1| DNase X [Rattus norvegicus]
gi|149029873|gb|EDL84985.1| deoxyribonuclease 1-like 1, isoform CRA_a [Rattus norvegicus]
Length = 312
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 30/104 (28%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ ++ GDFN S+ + + E T N +
Sbjct: 186 QRWQNENVILLGDFNADCASLAKKRLNSLLLRTKAGFHWVIPDGEDTTVRASTNCTYDRI 245
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + L + + ++S H P+ +E +
Sbjct: 246 VMHGQGCQKLLKAAATFDFPRRFQLTEEEALRVSDHYPVEVELN 289
>gi|237721042|ref|ZP_04551523.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|293372989|ref|ZP_06619358.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CMC 3f]
gi|229449877|gb|EEO55668.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|292632057|gb|EFF50666.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CMC 3f]
Length = 365
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 20/113 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + LK+ + P ++ GDFN +S K+ F +
Sbjct: 271 QADLLKQLIA---ASPYPTLVCGDFNSLPSSYVYHTIKGDKLQDG-----FQRSGHGYMY 322
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
K K L + Y DL+ S H P+ +
Sbjct: 323 TFKYFK-------HLLRIDYILHSPELNSTDYFSPDLNY-----SDHNPVVMR 363
>gi|332797485|ref|YP_004458985.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
gi|332695220|gb|AEE94687.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
Length = 245
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 31/124 (25%), Gaps = 26/124 (20%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDD-----------------FWQKMDPDGLLIRFPQE 58
K++ P +I GDFN + + +
Sbjct: 130 KLRERKPVIICGDFNAVRDRKDSSFWDEREPALTPQEREWLNHVINDLGFIDAYKLVNPN 189
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K R L+ + + + + + + S H PL +E
Sbjct: 190 KNEFTWRSYRF------KWKAMRIDYCLVSSELKN---EIKNCEVLKIEGSDHYPLLLEL 240
Query: 119 DFEK 122
+ E
Sbjct: 241 NIES 244
>gi|309780946|ref|ZP_07675685.1| extracellular ribonuclease/nuclease fusion protein [Ralstonia sp.
5_7_47FAA]
gi|308920249|gb|EFP65907.1| extracellular ribonuclease/nuclease fusion protein [Ralstonia sp.
5_7_47FAA]
Length = 738
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/137 (8%), Positives = 33/137 (24%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPF--VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + W ++ GD N + ++ +F K++
Sbjct: 551 RAAGLIADWLATSPTGVADIGKLLIGDLNSYAKEDPI--VLFADKGYADMVAKFV-GKDA 607
Query: 62 TCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQSD---------LDTR 104
V +D+ + + + + Y +
Sbjct: 608 YSYVYGGEAGYIDHALATPGLAERVRAVHEWHINADEPIALEYSFAYKSAEQQQTFYAPD 667
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ ++
Sbjct: 668 AYRSSDHDPVLVDLALN 684
>gi|229820664|ref|YP_002882190.1| Endonuclease/exonuclease/phosphatase [Beutenbergia cavernae DSM
12333]
gi|229566577|gb|ACQ80428.1| Endonuclease/exonuclease/phosphatase [Beutenbergia cavernae DSM
12333]
Length = 269
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 4/116 (3%)
Query: 5 QGEWLKKWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q L+ D + + +P V+ GD N + + R
Sbjct: 154 QAFGLRVVLDAVRERGDVPAVVLGDLNAGPRTEPL-AVVAGALHDARTRSRTAPTGPGGT 212
Query: 64 NVIKRNKSSLDYFVIDR-DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ D D + L+ ++ +V+YD S H P+ ++
Sbjct: 213 FHDWVPDAVADTAGDDDSRIDHVLVSDAVGVVAYDVPVPGPGVVP-SDHLPVVVDL 267
>gi|241745915|ref|XP_002405543.1| ap endonuclease, putative [Ixodes scapularis]
gi|215505857|gb|EEC15351.1| ap endonuclease, putative [Ixodes scapularis]
Length = 507
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 37/137 (27%), Gaps = 26/137 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------------FWQ 44
E LK+ A ++ G+ +I GD N I D
Sbjct: 163 ELLKRRAMTLLRNGLEVIILGDLNTSHRKIDHCDPSDDEDFDSNPGRIWLSQFLENSTTN 222
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
D P +++ R + + L + V + Q+
Sbjct: 223 TCFHDTYRRLHPTTEKAFTCWNTRLGARQTNYG--TRIDYVLCSPAL--VPFLQTADILP 278
Query: 105 RSKLSTHCPLTIEYDFE 121
S HCP+ + +
Sbjct: 279 HVLGSDHCPVEAIFRCD 295
>gi|71901538|ref|ZP_00683622.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Xylella
fastidiosa Ann-1]
gi|71728693|gb|EAO30840.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Xylella
fastidiosa Ann-1]
Length = 266
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 36/144 (25%), Gaps = 33/144 (22%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
WL+ + + +G +V+ GD+N +++ + + +
Sbjct: 127 MRWLRPILCEWLLSGRDYVLCGDWNIVRSALDIRNWKSNQKNSGCLPLERDWLNGLCADS 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ E R + ++ +
Sbjct: 187 LHDVNSAQGRGWVDTYRVLHPQGEDYTWWSNRGAARINNVGW--RIDYQFVSPGLRERVS 244
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
+ + S H P T+EY
Sbjct: 245 RCAIYC--EQRFSDHAPYTVEYVL 266
>gi|315644659|ref|ZP_07897790.1| 5'-Nucleotidase domain protein [Paenibacillus vortex V453]
gi|315279918|gb|EFU43217.1| 5'-Nucleotidase domain protein [Paenibacillus vortex V453]
Length = 2086
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 3 SQQ-GEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q + + V+ GD N + T ++D + ++
Sbjct: 1022 RHQIAAVVNGFVKSVVTANPDANVVVLGDLNDFQFTQTATILKGNELDNLIDTLPLKEQ- 1080
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N LD+ ++ ++ ++ V + +D + ++S H P+ + D
Sbjct: 1081 --YTYTYDGNSQVLDHILVSKNL----TRSTQVDVVHLNADFPASKGRVSDHDPVVAQID 1134
Query: 120 FE 121
+
Sbjct: 1135 LQ 1136
>gi|257784317|ref|YP_003179534.1| Endonuclease/exonuclease/phosphatase [Atopobium parvulum DSM 20469]
gi|257472824|gb|ACV50943.1| Endonuclease/exonuclease/phosphatase [Atopobium parvulum DSM 20469]
Length = 391
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 36/132 (27%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRK--------INSIGDTDDFWQKMDPD---GL 51
+QQ L K ++ G + GD+N + D + D G
Sbjct: 263 AQQLALLTKVMSEERAKGNYVIAGGDWNHAILGSLTLYPSIQQVPDWVAELKKSDLPEGF 322
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ P + + +++ ++ + + S H
Sbjct: 323 TVVAPDNLNNVPTCRGDDIPYEKDKTYTTTVDGWIVSDNVVATAKNVDTQFAY----SDH 378
Query: 112 CPLTIEYDFEKG 123
P+ + + +
Sbjct: 379 NPVLLSFTLKSA 390
>gi|89095707|ref|ZP_01168601.1| Endonuclease/Exonuclease/phosphatase family protein [Bacillus sp.
NRRL B-14911]
gi|89089453|gb|EAR68560.1| Endonuclease/Exonuclease/phosphatase family protein [Bacillus sp.
NRRL B-14911]
Length = 1532
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 9/114 (7%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + V+ GDFN S Q++ +I +E
Sbjct: 975 ANIVNGFVKDVKAEDPNANIVLLGDFNDFEFSNPLKALKGQEL---TNMIEQVPAEERYS 1031
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ N LD+ ++ + + I S + S H P+ I+
Sbjct: 1032 YSYQGNAQVLDHILVSNNLAAATAVDIVHI----NSGFMEEHGRASDHDPVLIQ 1081
>gi|302518572|ref|ZP_07270914.1| endonuclease/exonuclease/phosphatase [Streptomyces sp. SPB78]
gi|302427467|gb|EFK99282.1| endonuclease/exonuclease/phosphatase [Streptomyces sp. SPB78]
Length = 253
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 29/118 (24%), Gaps = 16/118 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + A++ ++ GD N + D + + + N
Sbjct: 148 QARLLTERAERLGAPH--VLVGGDLNEGPEGKAFRHVAGRLRDAWAVRPWGGEFTSTAEN 205
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-STHCPLTIEYDFE 121
+R + ++ L+ + S H P+
Sbjct: 206 PYQR-------------IDAMFVSEGVEVLGCGVPTLEDADVRAASDHVPVLAVLRLP 250
>gi|318057512|ref|ZP_07976235.1| hypothetical protein SSA3_06214 [Streptomyces sp. SA3_actG]
Length = 250
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 29/118 (24%), Gaps = 16/118 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + A++ ++ GD N + D + + + N
Sbjct: 145 QARLLTERAERLGAPH--VLVGGDLNEGPEGKAFRHVAGRLRDAWAVRPWGGEFTSTAEN 202
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-STHCPLTIEYDFE 121
+R + ++ L+ + S H P+
Sbjct: 203 PYQR-------------IDAMFVSEGVEVLGCGVPTLEDADVRAASDHVPVLAVLRLP 247
>gi|326798886|ref|YP_004316705.1| endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
gi|326549650|gb|ADZ78035.1| Endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
Length = 378
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 21/118 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
S+Q + +K+ + + P +I GDFN S ++
Sbjct: 282 SEQAKRIKE---EINRCRKPVIITGDFNDTPLSFAVHTV---------SSDLNNSFEKKG 329
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
L +F + Y + KLS H + +
Sbjct: 330 AGWGITYNGEFPN----FQIDYILSSKTFEVKHYQIL-----KKKLSDHYAVWSDLSL 378
>gi|224049325|ref|XP_002191825.1| PREDICTED: CCR4 carbon catabolite repression 4-like [Taeniopygia
guttata]
Length = 425
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 40/125 (32%), Gaps = 7/125 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + + ++ + + +
Sbjct: 296 CDLLQNLKNITQGAKIPLIVCGDFNAEPTEEVYREFSNSSLNLNSAYKLLSPDGQSEPPY 355
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEY 118
R + + ++++ +++ +Q + S S H L ++
Sbjct: 356 TTWKIRPSGECRHTLDYIWYSQHALNVNSALGLLTEEQIGPNRLPSFNYPSDHLSLVCDF 415
Query: 119 DFEKG 123
F +
Sbjct: 416 SFNQD 420
>gi|218509998|ref|ZP_03507876.1| putative metal-dependent hydrolase protein [Rhizobium etli Brasil
5]
Length = 242
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 31/119 (26%), Gaps = 16/119 (13%)
Query: 4 QQGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W ++ +P V+ GDFN +S D P+
Sbjct: 137 RQMTTLLNSGWLRGAMEEPLPCVLCGDFNALPSSATYRLVARSLKDAQLGGKAAPRATFP 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + + S H PL E F
Sbjct: 197 SRYP-------------LMRLDHIFVTDDLVVKRAAVL-QNRLTKVASDHLPLFAEISF 241
>gi|16758784|ref|NP_446359.1| deoxyribonuclease gamma precursor [Rattus norvegicus]
gi|6647472|sp|O89107|DNSL3_RAT RecName: Full=Deoxyribonuclease gamma; Short=DNase gamma; AltName:
Full=DNaseY; AltName: Full=Deoxyribonuclease I-like 3;
Short=DNase I-like 3; Flags: Precursor
gi|3220025|gb|AAC40134.1| DNase gamma [Rattus norvegicus]
gi|3395772|gb|AAC28937.1| DNAseY [Rattus norvegicus]
gi|56789880|gb|AAH88122.1| Deoxyribonuclease 1-like 3 [Rattus norvegicus]
gi|149040086|gb|EDL94170.1| deoxyribonuclease I-like 3 [Rattus norvegicus]
Length = 310
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++ F+ GDFN + + ++ D + ++E T + +
Sbjct: 181 RRRWKAENFIFMGDFNAGCSYVPKKAWKNIRLRTDPNFVWLIGDQEDTTVKKSTSCAYDR 240
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDFEKG 123
+ ++ N ++ S + + ++ + L S H P+ E+ +
Sbjct: 241 IVLRGQEIVNSVVPRSSGVFDFQKAYELSEEEALDVSDHFPV--EFKLQSS 289
>gi|330959493|gb|EGH59753.1| hypothetical protein PMA4326_13159 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 370
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 8/109 (7%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+W +Q G P ++ GDFN + + + + N R
Sbjct: 165 EWLEQVY-PGEPIMLMGDFNMPPSDPAFESLRTRAIPMVTDGA------STLSNTSGRFA 217
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-STHCPLTIEY 118
+ D ++ ++ + + S H P+ +
Sbjct: 218 NLYDNVFANQSARSMMSGVGIVNYPLMLKVSHEDGRRAVSDHAPVFFQL 266
>gi|330833582|ref|YP_004402407.1| DNA nuclease [Streptococcus suis ST3]
gi|329307805|gb|AEB82221.1| DNA nuclease [Streptococcus suis ST3]
Length = 1039
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 9/120 (7%)
Query: 6 GEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + V+ GDFN + M L+ +
Sbjct: 825 AQIITDFTKAGLTQNPNANIVMLGDFNDYEFTKTIEILETGGM---ANLVSRHDASDRFS 881
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
N SLD ++ + + + + S + S H PL ++ D K
Sbjct: 882 YFYNGNNQSLDNMLVSTNLLDRYAFDMVHVNSA----FMEEHGRASDHDPLLVQLDVTKA 937
>gi|298374557|ref|ZP_06984515.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
gi|298268925|gb|EFI10580.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
Length = 365
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 31/121 (25%), Gaps = 20/121 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ ++Q E + + G ++ GDFN S G L E
Sbjct: 265 IRAKQAEAVSEEIK--NAKGDYVLVCGDFNDTPISYAHRTI-------QGDLTDAFAESG 315
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N L + + ++ + S H PL
Sbjct: 316 RGMGITYNQNFF------WFRIDNILHSPNMTSMNCSVDKVAY-----SDHYPLWCYLKL 364
Query: 121 E 121
E
Sbjct: 365 E 365
>gi|167646152|ref|YP_001683815.1| endonuclease/exonuclease/phosphatase [Caulobacter sp. K31]
gi|167348582|gb|ABZ71317.1| Endonuclease/exonuclease/phosphatase [Caulobacter sp. K31]
Length = 324
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 16/119 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
QQ + + ++K ++ GDFN W D L + +
Sbjct: 219 RQQAQ--SRLLVAELKPFPRDSLIVTGDFNSTP-------WSWSLRRQDKALGLERRTRA 269
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +++ VS + S S H P+ +
Sbjct: 270 LASWPTGDFSRVARAPFPILPIDHVYAGKAWTTVSVE-----RGPSLGSDHRPVVVTLS 323
>gi|145346298|ref|XP_001417629.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577856|gb|ABO95922.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 474
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 36/129 (27%), Gaps = 18/129 (13%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSI---------------GDTDDFWQKMDPDGLL 52
L+ + G ++ GD+N + D ++ D ++
Sbjct: 150 ALEARYKSLRERGRNVILCGDWNIAPSWKLDRADEDPNAVEPRNPSRDWLAAQLAGDAMV 209
Query: 53 IRF--PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F S FL D + ++ + ++ + S
Sbjct: 210 DVFREFFPTLGDAFTCWNVASGAQLSNYGSRIDYFLCDRAVTLKRVRGVGV-AQKFEGSD 268
Query: 111 HCPLTIEYD 119
H P+ +E +
Sbjct: 269 HAPVYLELE 277
>gi|260941043|ref|XP_002614688.1| hypothetical protein CLUG_05466 [Clavispora lusitaniae ATCC 42720]
gi|238851874|gb|EEQ41338.1| hypothetical protein CLUG_05466 [Clavispora lusitaniae ATCC 42720]
Length = 291
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/116 (10%), Positives = 24/116 (20%), Gaps = 11/116 (9%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + +Q P + GDFN + + + +
Sbjct: 185 RESARLIAAKMEQ---GSEPVFLCGDFNTEPTDEPYHVLQSTGFKDSRV------QGKGY 235
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ N Y +S H P+ +Y
Sbjct: 236 GY-GSTFSGFNRKNEDNTIIDYIWAGNDTQWQDYGVVPNF-YDFYMSDHRPVIADY 289
>gi|327395006|dbj|BAK12428.1| endonuclease/exonuclease/phosphatase [Pantoea ananatis AJ13355]
Length = 371
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 36/129 (27%), Gaps = 14/129 (10%)
Query: 3 SQQGEWLKKWADQKIKTGIPFV-IAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q E +K Q+IK G + I GDFN +S ++ D + +
Sbjct: 242 KLQAERVKAIYQQRIKEGQTLIAITGDFNDTPDSEAL-APLLKETDLKDIFTHEKFDNGG 300
Query: 62 TCNVIKRNKSS--LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK----------LS 109
+S +DY ++ + + S
Sbjct: 301 YPGTWGGCSASNKIDYILLSPALWKKVEKGGVWRKGMWPGVRPVKWETYPELKKEVNAAS 360
Query: 110 THCPLTIEY 118
H + ++
Sbjct: 361 DHAAVWVDL 369
>gi|188989861|ref|YP_001901871.1| putative exported nuclease [Xanthomonas campestris pv. campestris
str. B100]
gi|167731621|emb|CAP49799.1| putative exported nuclease [Xanthomonas campestris pv. campestris]
Length = 1193
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 39/150 (26%), Gaps = 32/150 (21%)
Query: 3 SQQGEW--LKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD----------- 47
+Q + L + Q++ ++ GDFN + G D
Sbjct: 772 KRQAQASYLARLLQARQQLDPAERVLVMGDFNAFEFNDGYVDAMGTVTGKPAADAQTVVS 831
Query: 48 ---------PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
L F +S N SLD+ + + S S+
Sbjct: 832 GDGIDLVEPDYTDLTWFNTPDQSYSYAFDGNVQSLDHILANDALMRASNIASLSVGHARI 891
Query: 99 SDLDTRRS--------KLSTHCPLTIEYDF 120
+ + +LS H P +
Sbjct: 892 NADFPGTARNDANTPTRLSDHDPTVVLLRM 921
>gi|170736479|ref|YP_001777739.1| endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
MC0-3]
gi|169818667|gb|ACA93249.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
MC0-3]
Length = 604
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 31/137 (22%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + W ++ GDFN + L+ +
Sbjct: 467 RAAAKVADWLAGNPTGVKSQGVLLIGDFNSYTYEDPIRTLESRGY---RNLVARWIGANA 523
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-----------------LDTR 104
V LD+ + + + ++ D+
Sbjct: 524 YSYVYNGEAGYLDHALATLPLASHVKAVHEWHINADEPLALQYTLAYKSAEQQKTFYAAD 583
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ I+
Sbjct: 584 AYRSSDHDPVLIDIALP 600
>gi|21111415|gb|AAM39749.1| nuclease [Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|66572117|gb|AAY47527.1| nuclease [Xanthomonas campestris pv. campestris str. 8004]
Length = 1131
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 39/150 (26%), Gaps = 32/150 (21%)
Query: 3 SQQGEW--LKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD----------- 47
+Q + L + Q++ ++ GDFN + G D
Sbjct: 710 KRQAQASYLARLLQARQQLDPAERVLVMGDFNAFEFNDGYVDAMGTVTGKPAADAQTVVS 769
Query: 48 ---------PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
L F +S N SLD+ + + S S+
Sbjct: 770 GDGIDLVDPDYTDLTWFNTPDQSYSYAFDGNVQSLDHILANDALMRASNIASLSVGHARI 829
Query: 99 SDLDTRRS--------KLSTHCPLTIEYDF 120
+ + +LS H P +
Sbjct: 830 NADFPGTARNDANTPTRLSDHDPTVVLLRM 859
>gi|77747746|ref|NP_635825.2| nuclease [Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|77761085|ref|YP_241547.2| nuclease [Xanthomonas campestris pv. campestris str. 8004]
Length = 1193
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 39/150 (26%), Gaps = 32/150 (21%)
Query: 3 SQQGEW--LKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD----------- 47
+Q + L + Q++ ++ GDFN + G D
Sbjct: 772 KRQAQASYLARLLQARQQLDPAERVLVMGDFNAFEFNDGYVDAMGTVTGKPAADAQTVVS 831
Query: 48 ---------PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
L F +S N SLD+ + + S S+
Sbjct: 832 GDGIDLVDPDYTDLTWFNTPDQSYSYAFDGNVQSLDHILANDALMRASNIASLSVGHARI 891
Query: 99 SDLDTRRS--------KLSTHCPLTIEYDF 120
+ + +LS H P +
Sbjct: 892 NADFPGTARNDANTPTRLSDHDPTVVLLRM 921
>gi|107027090|ref|YP_624601.1| endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia AU
1054]
gi|116691517|ref|YP_837050.1| endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
HI2424]
gi|105896464|gb|ABF79628.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia AU
1054]
gi|116649517|gb|ABK10157.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
HI2424]
Length = 604
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 31/137 (22%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + W ++ GDFN + L+ +
Sbjct: 467 RAAAKVADWLAGNPTGVKSQGVLLIGDFNSYTYEDPIRTLESRGY---RNLVARWIGANA 523
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-----------------LDTR 104
V LD+ + + + ++ D+
Sbjct: 524 YSYVYNGEAGYLDHALATLPLASHVKAVHEWHINADEPLALQYTLAYKSAEQQKTFYAAD 583
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ I+
Sbjct: 584 AYRSSDHDPVLIDIALP 600
>gi|150003207|ref|YP_001297951.1| putative endonuclease/exonuclease/phosphatase family protein
[Bacteroides vulgatus ATCC 8482]
gi|254882487|ref|ZP_05255197.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|294776025|ref|ZP_06741521.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
vulgatus PC510]
gi|319640411|ref|ZP_07995133.1| endonuclease/exonuclease/phosphatase [Bacteroides sp. 3_1_40A]
gi|149931631|gb|ABR38329.1| putative endonuclease/exonuclease/phosphatase family protein
[Bacteroides vulgatus ATCC 8482]
gi|254835280|gb|EET15589.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|294450163|gb|EFG18667.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
vulgatus PC510]
gi|317387898|gb|EFV68755.1| endonuclease/exonuclease/phosphatase [Bacteroides sp. 3_1_40A]
Length = 281
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 27/119 (22%), Gaps = 6/119 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L ++I P V+ GDFN S +
Sbjct: 168 RRQSALLIIRKIKEIVGERPAVVTGDFNVTDASDAYETITTNEFVMKDAYKTA----ARV 223
Query: 63 CNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V + + S + LS H P + +F
Sbjct: 224 TGVDYTFHDFARIPAEDCEKIDFIFVTPQVLVKSCEIPAEVPEAL-LSDHNPQLADLEF 281
>gi|218961593|ref|YP_001741368.1| hypothetical protein; putative signal peptide [Candidatus
Cloacamonas acidaminovorans]
gi|167730250|emb|CAO81162.1| hypothetical protein; putative signal peptide [Candidatus
Cloacamonas acidaminovorans]
Length = 302
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 34/128 (26%), Gaps = 10/128 (7%)
Query: 1 MLSQQG-EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
M + + L + + ++ GD N +I D + F ++
Sbjct: 175 MRRRLACQKLDNYISTSLS-DKKVIVLGDLNDQIAEPEDYNVFLSFLNKPEEYYFADMPI 233
Query: 60 E-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-------DLDTRRSKLSTH 111
S SSL + D + +T S +S H
Sbjct: 234 ALSPTYSNVSYPSSLSHIDHILITNELFEDFENAGSYCRTILAENWMLSWNTYSSTISDH 293
Query: 112 CPLTIEYD 119
P+ I
Sbjct: 294 RPVGIRIS 301
>gi|124266264|ref|YP_001020268.1| hypothetical protein Mpe_A1072 [Methylibium petroleiphilum PM1]
gi|124259039|gb|ABM94033.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 270
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 13/116 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + L + Q++ +P ++AGDFN + M GL +
Sbjct: 164 RQVQRLAAFVRQELDPAVPLLVAGDFNDWGERLD------GAMQEAGLRRAVAPSAKGL- 216
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+S + + + + VS T +++S H PL E++
Sbjct: 217 -----QRSLTFPSLAPVFALDRVYTRGWRCVSTFVPRGAT-WARMSDHLPLVAEFE 266
>gi|50539874|ref|NP_001002403.1| deoxyribonuclease I-like 3, like [Danio rerio]
gi|49902939|gb|AAH76179.1| Deoxyribonuclease I-like 3, like [Danio rerio]
gi|220679244|emb|CAX14380.1| deoxyribonuclease I-like 3, like [Danio rerio]
Length = 292
Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/100 (13%), Positives = 35/100 (35%), Gaps = 2/100 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+ GD N N + + ++ D ++++ T K + + +
Sbjct: 181 ENVMFLGDLNAACNYVTNKGLRNVRLRSDPKFHWLIRDEQDTTVREKTRCAYDRIIIHGK 240
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
+ + ++ S ++ Q + L S H P+ ++
Sbjct: 241 ELISGIVPESAQPFNFKQEFNLSEEEALEVSDHFPVEVDL 280
>gi|218661214|ref|ZP_03517144.1| Endonuclease/exonuclease/phosphatase [Rhizobium etli IE4771]
Length = 240
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 16/116 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L ++ V+ GDFN +S ++ + P GL
Sbjct: 140 EEQALALAGLIERLWPGDEGLVVCGDFNVLPDS-----ATFKILAPLGLSDLVTGNGLVD 194
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K L+ I ++ +S H L ++
Sbjct: 195 TRTSYYLKQGRF-------ADYMLVTPEVKIAKFEVVASPE----VSDHRALLLDI 239
>gi|332528588|ref|ZP_08404570.1| endonuclease/exonuclease/phosphatase [Hylemonella gracilis ATCC
19624]
gi|332041904|gb|EGI78248.1| endonuclease/exonuclease/phosphatase [Hylemonella gracilis ATCC
19624]
Length = 264
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 35/119 (29%), Gaps = 19/119 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L ++ ++I T P ++AGDFN G + E+
Sbjct: 165 RQAAQLDQYIRREIPTEAPLIVAGDFN-----------------DWGERVHRHFERMGLQ 207
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + + + ++S H PL E+ +
Sbjct: 208 TCEPAAHPTFPARLPLVQLDYVYVR-GLTPLRVVVPRG-RAWWRMSDHLPLIAEFTLPQ 264
>gi|322420097|ref|YP_004199320.1| endonuclease/exonuclease/phosphatase [Geobacter sp. M18]
gi|320126484|gb|ADW14044.1| Endonuclease/exonuclease/phosphatase [Geobacter sp. M18]
Length = 246
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 26/119 (21%), Gaps = 16/119 (13%)
Query: 5 QGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + +W + + P ++ GDFN S + M
Sbjct: 142 QARAVTGHEWL-EHPECRHPAILCGDFNATAGS-YVYRLLTRHMHDVQ--RGLKGRLPRG 197
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ L + S R S H PL +
Sbjct: 198 TWP---------AQFPFMRIDHLLASRDLKVRSVSVPRTPLTRV-ASDHLPLVATLELP 246
>gi|237786126|ref|YP_002906831.1| putative exodeoxyribonuclease [Corynebacterium kroppenstedtii DSM
44385]
gi|237759038|gb|ACR18288.1| putative exodeoxyribonuclease [Corynebacterium kroppenstedtii DSM
44385]
Length = 361
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 26/97 (26%), Gaps = 4/97 (4%)
Query: 26 AGDF----NRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
GDF + + ++ D E+ R ++ D
Sbjct: 264 IGDFFASKDYQPSAASFRGPAKDPKWVDVQRSFHEDEEGPYSWYTWRGQAFDTGAGWRID 323
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ V+ DT + S H P+ + +
Sbjct: 324 VHAATRSLAERAVAARTDVADTYDLRWSDHSPVVVGF 360
>gi|223939432|ref|ZP_03631310.1| Endonuclease/exonuclease/phosphatase [bacterium Ellin514]
gi|223891924|gb|EEF58407.1| Endonuclease/exonuclease/phosphatase [bacterium Ellin514]
Length = 330
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 19/131 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPF--VIAGDFNRKINSIGDT--------------DDFWQKMD 47
++ + L++ D ++ ++ GDFN +S + D
Sbjct: 198 EEAKVLREIIDARLAANPNLNLIVLGDFNDLHDSAPIKTILGGRSKKGLIDTRPAERNGD 257
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
R + T Y +D + I ++ +
Sbjct: 258 DHSHTDRRVASRNIT--WTHFYAKEDTYSRVDYILLSHGIAREWNTNESYVLSIPNWG-T 314
Query: 108 LSTHCPLTIEY 118
S H PL +
Sbjct: 315 GSDHRPLVASF 325
>gi|94313911|ref|YP_587120.1| putative endonuclease/exonuclease/phosphatase [Cupriavidus
metallidurans CH34]
gi|93357763|gb|ABF11851.1| putative endonuclease/exonuclease/phosphatase [Cupriavidus
metallidurans CH34]
Length = 848
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/138 (8%), Positives = 34/138 (24%), Gaps = 22/138 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPF--VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + W ++ GD N + + ++ +F K++
Sbjct: 631 RAAGLIADWLATSPTGVADVGKLLIGDLNSYAKEDPV--LLFAEKGYADMVAKFV-GKDA 687
Query: 62 TCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQSD---------LDTR 104
V +D+ + + + + Y +
Sbjct: 688 YSYVFGGESGYIDHALATSALADRVRAVHEWHINADEPIALEYSFAYKSAEQQQTFYAAD 747
Query: 105 RSKLSTHCPLTIEYDFEK 122
+ S H P+ ++
Sbjct: 748 PYRSSDHDPVLVDLALNS 765
>gi|325918813|ref|ZP_08180896.1| putative extracellular nuclease [Xanthomonas vesicatoria ATCC
35937]
gi|325534959|gb|EGD06872.1| putative extracellular nuclease [Xanthomonas vesicatoria ATCC
35937]
Length = 1032
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 36/152 (23%), Gaps = 32/152 (21%)
Query: 3 SQQGEW--LKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------- 42
+Q + L + Q++ ++ GDFN + G D
Sbjct: 609 KRQAQAEYLARLLQTRQQVNPDEKVLVMGDFNAFEFNDGYVDAMGTVTGKPAPDAQTVVG 668
Query: 43 --WQKMDPDGLLIRFPQEKE--STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ S N SLD+ + S +
Sbjct: 669 GDGADLVDPDYTDLTWFNTPNQSYSYAFDGNVQSLDHILASDALMRAPQIASLLVGHARI 728
Query: 99 SDLDTRRS--------KLSTHCPLTIEYDFEK 122
+ + +LS H P + K
Sbjct: 729 NADFPGTARNDANTPTRLSDHDPTVVLLRMSK 760
>gi|114707796|ref|ZP_01440690.1| hypothetical protein FP2506_17604 [Fulvimarina pelagi HTCC2506]
gi|114536785|gb|EAU39915.1| hypothetical protein FP2506_17604 [Fulvimarina pelagi HTCC2506]
Length = 244
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 33/120 (27%), Gaps = 18/120 (15%)
Query: 5 QGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L +W PFV+ GDFN S +D + +
Sbjct: 138 QAAALLASEWLADLSA---PFVLLGDFNAVSGSKA-HSLLTASLDDARRFGGRSGLRPTF 193
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + S R + S H PL I++D ++
Sbjct: 194 PS-----------RFPILALDHCFFRGDLKVRSAYVVRSPLVR-RASDHLPLVIDFDAQR 241
>gi|297562942|ref|YP_003681916.1| endonuclease/exonuclease/phosphatase [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847390|gb|ADH69410.1| Endonuclease/exonuclease/phosphatase [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 810
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 13/118 (11%)
Query: 5 QGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q ++ +A++ + V+ GD N S + + +E+
Sbjct: 693 QAGLVRDFAEELLAVDPEANLVVMGDLNDFQFSRTLEILTADGPLHNPMTDLPVEER--Y 750
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR-RSKLSTHCPLTIEYD 119
V N +LD+ ++++ V YD + +++ ++S H P + D
Sbjct: 751 NYVFDGNSQALDHILVNQALAGR--------VEYDIARINSEFSDQVSDHDPQVLWLD 800
>gi|260910352|ref|ZP_05917025.1| endonuclease/exonuclease/phosphatase [Prevotella sp. oral taxon 472
str. F0295]
gi|260635535|gb|EEX53552.1| endonuclease/exonuclease/phosphatase [Prevotella sp. oral taxon 472
str. F0295]
Length = 310
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 33/144 (22%), Gaps = 29/144 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + K + +P V+ GDFN D ++ + E+
Sbjct: 171 RESAKLVMKAIEGLGGKDMPVVLTGDFNVDQTDETYAIFTANARLNDAYVVAKHRFAENG 230
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY------------------------DQ 98
S + + FS+ Y
Sbjct: 231 T-----FNSFNPTLKTTSRIDHIFVSPRFSVARYAVLPNFYWTEEPATKSQKGQDAPQQI 285
Query: 99 SDLDTRRSKLSTHCPLTIEYDFEK 122
+ S H P+ E +
Sbjct: 286 DLKQHQLRTASDHYPVFAEINLNS 309
>gi|187927854|ref|YP_001898341.1| endonuclease/exonuclease/phosphatase [Ralstonia pickettii 12J]
gi|187724744|gb|ACD25909.1| Endonuclease/exonuclease/phosphatase [Ralstonia pickettii 12J]
Length = 818
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/137 (8%), Positives = 34/137 (24%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPF--VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + W ++ GD N + + ++ +F K++
Sbjct: 631 RAAGLIADWLATSPTGVADVGQLLIGDLNSYAKEDPV--VLFAQKGYADMVAKFV-GKDA 687
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-----------------LDTR 104
V +D+ + + ++ D+
Sbjct: 688 YSYVYGGESGYIDHALATPGLAERVRAVHEWHINADEPIALEYAFGHKSAEQQQTFYAPD 747
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ ++
Sbjct: 748 AYRSSDHDPVLVDLALN 764
>gi|301308230|ref|ZP_07214184.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
gi|300833700|gb|EFK64316.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
Length = 365
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 31/121 (25%), Gaps = 20/121 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ ++Q E + + G ++ GDFN S MD E
Sbjct: 265 IRAKQAEAVSEEIK--NAKGDYVLVCGDFNDTPISYAHRTIQGDLMD-------AFAESG 315
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N L + + ++ + S H PL
Sbjct: 316 RGMGITYNQNFF------WFRIDNILHSPNMTSMNCSVDKVAY-----SDHYPLWCYLKL 364
Query: 121 E 121
E
Sbjct: 365 E 365
>gi|239817089|ref|YP_002945999.1| endonuclease/exonuclease/phosphatase [Variovorax paradoxus S110]
gi|239803666|gb|ACS20733.1| Endonuclease/exonuclease/phosphatase [Variovorax paradoxus S110]
Length = 250
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 36/117 (30%), Gaps = 16/117 (13%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L+++ ++++ G V+AGDFN + M +
Sbjct: 149 RQVARLREFIEREVPPGEAVVVAGDFNDWGARMRY---AMNAMGLRDTSDLRGPRTLTYP 205
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +F+ V+ +++S H PL ++
Sbjct: 206 ------------SRLPVAQLDFVYGRELEPVACSVPRGPI-WARMSDHLPLVADFAL 249
>gi|218672299|ref|ZP_03521968.1| exodeoxyribonuclease III protein [Rhizobium etli GR56]
Length = 79
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 9/75 (12%), Positives = 17/75 (22%)
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + S + D+ + + S
Sbjct: 2 TDAVRHLHPNERIYTFWKYWRNSFERDAGLRIDHLLLSPAVAPWLRSASVRRKPRGWEHT 61
Query: 109 STHCPLTIEYDFEKG 123
S H P+ IE D +
Sbjct: 62 SDHAPVMIELDIPEA 76
>gi|293381524|ref|ZP_06627515.1| conserved hypothetical protein [Lactobacillus crispatus 214-1]
gi|290921914|gb|EFD98925.1| conserved hypothetical protein [Lactobacillus crispatus 214-1]
Length = 155
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 16/133 (12%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKI-----------NSIGDT-DDFWQKMDP 48
M Q + + +++ + G ++ GDFN + I QKM P
Sbjct: 27 MRKAQMKLISSVMEKEYRRGNYVIVGGDFNHALGKDMMTHFEHQEEIPSWVSVLDQKMLP 86
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ Q +E+ V + F++ + +Y+ +
Sbjct: 87 KDFTMIKAQNRENVATVRATDMKYDPKVNYMTICDGFIVSKNVQAKAYNINTHFEYA--- 143
Query: 109 STHCPLTIEYDFE 121
H P+ +E++ +
Sbjct: 144 -DHNPVRLEFELK 155
>gi|288926930|ref|ZP_06420828.1| AP endonuclease domain protein [Prevotella buccae D17]
gi|288336289|gb|EFC74672.1| AP endonuclease domain protein [Prevotella buccae D17]
Length = 365
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 18/110 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + + I +P ++ GDFN S + L +
Sbjct: 264 QVDSVAAYVARHIGR-MPVILCGDFNESPISYAHYR------MENLLTDCYVSAGNGPGW 316
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
R + N + + D + K S H P+
Sbjct: 317 SYHR-------SGMYVRIDNIFCSDDWKPYQCRVDD----KIKESDHYPI 355
>gi|262047327|ref|ZP_06020284.1| metal-dependent hydrolase [Lactobacillus crispatus MV-3A-US]
gi|312977126|ref|ZP_07788874.1| endonuclease/exonuclease/phosphatase family protein [Lactobacillus
crispatus CTV-05]
gi|260572301|gb|EEX28864.1| metal-dependent hydrolase [Lactobacillus crispatus MV-3A-US]
gi|310895557|gb|EFQ44623.1| endonuclease/exonuclease/phosphatase family protein [Lactobacillus
crispatus CTV-05]
Length = 290
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 16/133 (12%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKI-----------NSIGDT-DDFWQKMDP 48
M Q + + +++ + G ++ GDFN + I QKM P
Sbjct: 162 MRKAQMKLISSVMEKEYRRGNYVIVGGDFNHALGKDMMTHFEHQEEIPSWVSVLDQKMLP 221
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ Q +E+ V + F++ + +Y+ +
Sbjct: 222 KDFTMIKAQNRENVATVRATDMKYDPKVNYMTICDGFIVSKNVQAKAYNINTHFEYA--- 278
Query: 109 STHCPLTIEYDFE 121
H P+ +E++ +
Sbjct: 279 -DHNPVRLEFELK 290
>gi|171915191|ref|ZP_02930661.1| Endonuclease/exonuclease/phosphatase [Verrucomicrobium spinosum DSM
4136]
Length = 331
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 17/119 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E ++ W+ Q+ + G ++AGDFN ++ L V
Sbjct: 227 EEIRLWSVQRQQEGRAVIVAGDFNCTP-----WAWLYKDFLYQTHL------------VD 269
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
+ +ID+ F + S + S H P+ + D++ ++
Sbjct: 270 TSQGRLFEATRHVWLPDRIMIDHVFVSSDWKVSGREVGPDFGSDHRPVFVSLDWDSSDL 328
>gi|262382529|ref|ZP_06075666.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262295407|gb|EEY83338.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 365
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 31/121 (25%), Gaps = 20/121 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ ++Q E + + G ++ GDFN S G L E
Sbjct: 265 IRAKQAEAVSEEIK--NAKGEYVLVCGDFNDTPISYAHRTI-------QGDLTDAFAESG 315
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N L + + ++ + S H PL
Sbjct: 316 RGMGITYNQNFF------WFRIDNILHSPNMTSMNCSVDKVAY-----SDHYPLWCCLKL 364
Query: 121 E 121
E
Sbjct: 365 E 365
>gi|302338290|ref|YP_003803496.1| endonuclease/exonuclease/phosphatase [Spirochaeta smaragdinae DSM
11293]
gi|301635475|gb|ADK80902.1| Endonuclease/exonuclease/phosphatase [Spirochaeta smaragdinae DSM
11293]
Length = 250
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 35/119 (29%), Gaps = 10/119 (8%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
++ + +W + P ++ GDFN + ++ + Q
Sbjct: 140 EEALKIARWLKNRKSDAPPLLLCGDFNDPWH--PSRILAEAGLNDVFYELGLLQPPTFP- 196
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEYDF 120
N + + ++ + V D + +S H P+ ++F
Sbjct: 197 -----NPALSEEIYMNETIDRIMYGGGPLPVLASVVDFHGSGASCGVSDHKPVVAVFEF 250
>gi|163869207|ref|YP_001610459.1| exodeoxyribonuclease III [Bartonella tribocorum CIP 105476]
gi|161018906|emb|CAK02464.1| exodeoxyribonuclease III [Bartonella tribocorum CIP 105476]
Length = 271
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 31/132 (23%), Gaps = 23/132 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDGL 51
+ + GI ++ GD N + Q D +
Sbjct: 138 FIRADQEKGISSLLLGDLNIAPLAEDVWSHQQLLKVVSHTPIETERLQGLCCQGGWIDLM 197
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDTRRSKLS 109
+ P + R + R + + D S + S
Sbjct: 198 RLHIPVPTKLYTWWSYRARDWAL-TDYGRRLDHVWSSPDLASFLVDLSTFRDARGWERPS 256
Query: 110 THCPLTIEYDFE 121
H P+ ++F
Sbjct: 257 DHIPVQTVFNFS 268
>gi|307579157|gb|ADN63126.1| exodeoxyribonuclease III Xth [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 237
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 36/144 (25%), Gaps = 33/144 (22%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
WL+ + + +G +V+ GD+N +++ + + +
Sbjct: 98 MRWLRPILCEWLLSGRDYVLCGDWNIVRSALDIRNWKSNQKNSGCLPLERDWLNGLCADS 157
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ E R + ++ +
Sbjct: 158 LHDVNSAQGRGWVDTYRVLHPQGEDYTWWSNRGAARVNNVGW--RIDYQFVSPGLRERVS 215
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
+ + S H P T+EY
Sbjct: 216 RCAIYC--EQRFSDHAPYTVEYVL 237
>gi|225857433|ref|YP_002738944.1| exodeoxyribonuclease III [Streptococcus pneumoniae P1031]
gi|225724673|gb|ACO20525.1| exodeoxyribonuclease III [Streptococcus pneumoniae P1031]
Length = 275
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 25/139 (17%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQK 45
+Q W K+A+ ++ P + GD+N N I + +
Sbjct: 141 ERQV-WDAKYAEYLAELDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTN 199
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N + +
Sbjct: 200 LLATGFTDTFRHVHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVTKSDMI 258
Query: 102 DTRRSKLSTHCPLTIEYDF 120
D+ + H P+ +E D
Sbjct: 259 DSGARQ--DHTPIVLEIDL 275
>gi|196006483|ref|XP_002113108.1| hypothetical protein TRIADDRAFT_37773 [Trichoplax adhaerens]
gi|190585149|gb|EDV25218.1| hypothetical protein TRIADDRAFT_37773 [Trichoplax adhaerens]
Length = 273
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/97 (10%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+I GD N + + ++ + ++ + + + + ++ +
Sbjct: 176 IILGDLNADCSYVTSSEWSYIRLWTQSRFNWIIPNS-ADTTTKSTHCAYDRFVLVGSRMQ 234
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPLTIEY 118
+ + + + YD + +S H P+ +E
Sbjct: 235 SDYVSGTAKVFRYDTEYGLSYSETTAVSDHYPIEMEL 271
>gi|145511051|ref|XP_001441453.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408703|emb|CAK74056.1| unnamed protein product [Paramecium tetraurelia]
Length = 374
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 30/139 (21%), Gaps = 31/139 (22%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------------- 49
+ + D+ +K +I GD N I + K
Sbjct: 240 QNYLDK-LKQTKNTIICGDLNVSHTEIDLANPEGNKRSAGQLIIYDQRFTQEERDSFSKF 298
Query: 50 ------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
++ R S F+++ V
Sbjct: 299 LSKGWIDTFRHLHPKEIKYSYFSPRFNSRETNKGW--RIDYFVVNQEA--VGSVIQSDIK 354
Query: 104 RRSKLSTHCPLTIEYDFEK 122
S H P+ + D K
Sbjct: 355 TTILGSDHVPIECDIDLTK 373
>gi|329664474|ref|NP_001192653.1| deoxyribonuclease gamma [Bos taurus]
gi|297488566|ref|XP_002697036.1| PREDICTED: deoxyribonuclease I-like 3 [Bos taurus]
gi|296474868|gb|DAA16983.1| deoxyribonuclease I-like 3 [Bos taurus]
Length = 305
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 6/124 (4%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D ++ F+ GDFN + + ++ D + ++E
Sbjct: 163 REIDELADVYTDVKRRWNAENFIFMGDFNAGCSYVPKKAWKDIRLRTDPKFVWLIGDQED 222
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYD 119
T N + + ++ N ++ S + + ++ + L S H P+ E+
Sbjct: 223 TTVKKSTNCAYDRIVLRGQNIVNSVVPQSNLVFDFQKAYRLSESKALDVSDHFPV--EFK 280
Query: 120 FEKG 123
+
Sbjct: 281 LQSS 284
>gi|333031000|ref|ZP_08459061.1| Endonuclease/exonuclease/phosphatase [Bacteroides coprosuis DSM
18011]
gi|332741597|gb|EGJ72079.1| Endonuclease/exonuclease/phosphatase [Bacteroides coprosuis DSM
18011]
Length = 302
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 29/125 (23%), Gaps = 29/125 (23%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
P ++ GDFN + D + + + D
Sbjct: 183 EEPVILTGDFNVDQTHNSYKILHDSDILQDSYEVAEICYALNGT-----FNAFNINLRTD 237
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSK------------------------LSTHCPLT 115
+ + +F + Y R + S H PL
Sbjct: 238 SRIDHVFVSPTFQVKKYGVLTDTYRSTNKEIKTVHEGDFPKEVSFEVNEARLPSDHFPLV 297
Query: 116 IEYDF 120
+E +F
Sbjct: 298 VELNF 302
>gi|326922202|ref|XP_003207340.1| PREDICTED: endonuclease/exonuclease/phosphatase family
domain-containing protein 1-like, partial [Meleagris
gallopavo]
Length = 471
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 10/116 (8%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ +K +I GDFN+ +S D ++ P + + S
Sbjct: 336 LQESLKGEKDVIILGDFNQAPDSSD-HDILRKE----KFHHLVPSNTFTNISTKNPQGSK 390
Query: 73 LDYFVIDRDNKNFLIDNSFSIVS-----YDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + + +++V D + S HCP+ E+ EK
Sbjct: 391 SLDNMWISRSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASDHCPVLAEFYMEKD 446
>gi|256825383|ref|YP_003149343.1| extracellular nuclease [Kytococcus sedentarius DSM 20547]
gi|256688776|gb|ACV06578.1| predicted extracellular nuclease [Kytococcus sedentarius DSM 20547]
Length = 802
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 3/119 (2%)
Query: 5 QGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q ++ + D + ++AGD N S L R ++
Sbjct: 680 QAREVRGFVDSLLAKDATANVIVAGDVNDFEFSPVTDTLVGSGATALRDLPRELAPQDRY 739
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR-RSKLSTHCPLTIEYDF 120
+ N LD+ ++ R+ + +D ++ +LS H P + +
Sbjct: 740 TYNYQGNSQVLDHILLSRNLTESAHPFGGAPYEHDVVHVNADFHDQLSDHDPQVVSIPW 798
>gi|294787015|ref|ZP_06752269.1| exodeoxyribonuclease III [Parascardovia denticolens F0305]
gi|315226658|ref|ZP_07868446.1| exodeoxyribonuclease [Parascardovia denticolens DSM 10105]
gi|294485848|gb|EFG33482.1| exodeoxyribonuclease III [Parascardovia denticolens F0305]
gi|315120790|gb|EFT83922.1| exodeoxyribonuclease [Parascardovia denticolens DSM 10105]
Length = 277
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 35/125 (28%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEK 59
Q + P + GDFN I + ++ G F +
Sbjct: 156 QDLDQVKPVIACGDFNVAHEEIDLAHPASNRRSAGFTDEERDKFGQLLDAGFADTFRRLH 215
Query: 60 ES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ +R +S +L+ + S +DT + H PL
Sbjct: 216 PNQAGVYTWWAQRAVTSKAN-NSGWRIDYWLVSDRLMDKVRGVSVMDTGERR--DHAPLV 272
Query: 116 IEYDF 120
+E D
Sbjct: 273 MEIDL 277
>gi|282864842|ref|ZP_06273896.1| Endonuclease/exonuclease/phosphatase [Streptomyces sp. ACTE]
gi|282560267|gb|EFB65815.1| Endonuclease/exonuclease/phosphatase [Streptomyces sp. ACTE]
Length = 796
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 29/119 (24%), Gaps = 14/119 (11%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + + +K V GD N S ++ + E+
Sbjct: 689 RQAAEVNTFVTSLLKADRSARVVTLGDLNDFAFSPAMDALTRGRVLKPLITTLPRGEQ-- 746
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYD 119
V N + + L + YD + S H P +
Sbjct: 747 YSYVYDGN---------SQTLDHILTSPGIRRLDYDVVHINAEFADQASDHDPQIVRIR 796
>gi|227875870|ref|ZP_03993996.1| possible exodeoxyribonuclease III [Mobiluncus mulieris ATCC 35243]
gi|269977505|ref|ZP_06184477.1| exodeoxyribonuclease III [Mobiluncus mulieris 28-1]
gi|306819151|ref|ZP_07452865.1| exodeoxyribonuclease III [Mobiluncus mulieris ATCC 35239]
gi|227843618|gb|EEJ53801.1| possible exodeoxyribonuclease III [Mobiluncus mulieris ATCC 35243]
gi|269934421|gb|EEZ90983.1| exodeoxyribonuclease III [Mobiluncus mulieris 28-1]
gi|304648127|gb|EFM45438.1| exodeoxyribonuclease III [Mobiluncus mulieris ATCC 35239]
Length = 289
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 30/126 (23%), Gaps = 32/126 (25%)
Query: 24 VIAGDFNRKINSIGDTDD----------------------------FWQKMDPDGLLIRF 55
++ GDFN + + D
Sbjct: 165 LVCGDFNIVRTERDIKNWKPNHNKVSGVMDEEIAILDTWMSDSLEGTAKHPAVDVTRALL 224
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCP 113
+ + +R K+ + + + + + S + + S H P
Sbjct: 225 GEVQGPYTWWSQRGKAFDNDAGW--RIDYQMATPGLATHAAEVSVWRAPSYAERWSDHAP 282
Query: 114 LTIEYD 119
L+I Y
Sbjct: 283 LSITYQ 288
>gi|218658684|ref|ZP_03514614.1| putative metal-dependent hydrolase protein [Rhizobium etli IE4771]
Length = 216
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 29/119 (24%), Gaps = 16/119 (13%)
Query: 4 QQGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W +P ++ GDFN +S D P+
Sbjct: 111 RQMTTLLNSGWLRGTKDEPLPCILCGDFNAIPSSATYRLATRSLKDALLGGKAAPRATFP 170
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + + S H PL E F
Sbjct: 171 SRYP-------------LMRLDHIFVTDDLVVKRATVL-QNRLTRVASDHLPLFAEISF 215
>gi|15901674|ref|NP_346278.1| exodeoxyribonuclease [Streptococcus pneumoniae TIGR4]
gi|15903702|ref|NP_359252.1| exodeoxyribonuclease [Streptococcus pneumoniae R6]
gi|111658189|ref|ZP_01408884.1| hypothetical protein SpneT_02000620 [Streptococcus pneumoniae
TIGR4]
gi|116516049|ref|YP_817078.1| exodeoxyribonuclease III [Streptococcus pneumoniae D39]
gi|149004304|ref|ZP_01829075.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP14-BS69]
gi|168483377|ref|ZP_02708329.1| exodeoxyribonuclease III [Streptococcus pneumoniae CDC1873-00]
gi|194397999|ref|YP_002038432.1| exodeoxyribonuclease III [Streptococcus pneumoniae G54]
gi|237649626|ref|ZP_04523878.1| exodeoxyribonuclease III [Streptococcus pneumoniae CCRI 1974]
gi|237822093|ref|ZP_04597938.1| exodeoxyribonuclease III [Streptococcus pneumoniae CCRI 1974M2]
gi|303258792|ref|ZP_07344772.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP-BS293]
gi|303261955|ref|ZP_07347901.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP14-BS292]
gi|303263817|ref|ZP_07349739.1| exodeoxyribonuclease III [Streptococcus pneumoniae BS397]
gi|303265648|ref|ZP_07351547.1| exodeoxyribonuclease III [Streptococcus pneumoniae BS457]
gi|303268757|ref|ZP_07354546.1| exodeoxyribonuclease III [Streptococcus pneumoniae BS458]
gi|61223736|sp|P0A2X3|EXOA_STRPN RecName: Full=Exodeoxyribonuclease
gi|61223737|sp|P0A2X4|EXOA_STRR6 RecName: Full=Exodeoxyribonuclease
gi|153627|gb|AAA26879.1| exodeoxyribonuclease [Streptococcus pneumoniae]
gi|14973347|gb|AAK75918.1| exodeoxyribonuclease [Streptococcus pneumoniae TIGR4]
gi|15459332|gb|AAL00463.1| Exodeoxyribonuclease [Streptococcus pneumoniae R6]
gi|116076625|gb|ABJ54345.1| exodeoxyribonuclease III [Streptococcus pneumoniae D39]
gi|147757737|gb|EDK64752.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP14-BS69]
gi|172043234|gb|EDT51280.1| exodeoxyribonuclease III [Streptococcus pneumoniae CDC1873-00]
gi|194357666|gb|ACF56114.1| exodeoxyribonuclease III [Streptococcus pneumoniae G54]
gi|302637038|gb|EFL67527.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP14-BS292]
gi|302640293|gb|EFL70748.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP-BS293]
gi|302641713|gb|EFL72071.1| exodeoxyribonuclease III [Streptococcus pneumoniae BS458]
gi|302644775|gb|EFL75023.1| exodeoxyribonuclease III [Streptococcus pneumoniae BS457]
gi|302646855|gb|EFL77080.1| exodeoxyribonuclease III [Streptococcus pneumoniae BS397]
gi|332200400|gb|EGJ14473.1| exodeoxyribonuclease III [Streptococcus pneumoniae GA47368]
Length = 275
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 25/139 (17%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQK 45
+Q W K+A+ ++ P + GD+N N I + +
Sbjct: 141 ERQV-WDAKYAEYLAELDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTN 199
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N + +
Sbjct: 200 LLATGFTDTFRHVHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVTKSDMI 258
Query: 102 DTRRSKLSTHCPLTIEYDF 120
D+ + H P+ +E D
Sbjct: 259 DSGARQ--DHTPIVLEIDL 275
>gi|296225529|ref|XP_002758534.1| PREDICTED: deoxyribonuclease gamma-like isoform 1 [Callithrix
jacchus]
Length = 305
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ F+ GDFN + + ++ D + ++E T N +
Sbjct: 176 KHRWKAENFIFMGDFNAGCSYVPKKAWKNIRLRIDPRFVWLIGDQEDTTVKKSTNCAYDR 235
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDFEKG 123
+ ++ + ++ S S+ + ++ + L S H P+ E+ +
Sbjct: 236 IVLRGQEIVSSIVPKSTSVFDFQKAYKLSEEKALDVSDHFPV--EFKLQSS 284
>gi|307325998|ref|ZP_07605196.1| Endonuclease/exonuclease/phosphatase [Streptomyces violaceusniger
Tu 4113]
gi|306888220|gb|EFN19208.1| Endonuclease/exonuclease/phosphatase [Streptomyces violaceusniger
Tu 4113]
Length = 608
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 29/116 (25%), Gaps = 14/116 (12%)
Query: 5 QGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + + V+AGD N S D + D + E+
Sbjct: 501 QAKTVNTFVKTLLNADPKAAVVVAGDLNDYQFSPALADLTKGGVLTDLVTRLPRDERYGY 560
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIE 117
+ + L + YD + S H P +
Sbjct: 561 VY-----------NGNSQVLDHILTSRALRRADYDIVHINAEFADQSSDHDPQVVR 605
>gi|291618627|ref|YP_003521369.1| Hypothetical Protein PANA_3074 [Pantoea ananatis LMG 20103]
gi|291153657|gb|ADD78241.1| Hypothetical Protein PANA_3074 [Pantoea ananatis LMG 20103]
Length = 371
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 36/129 (27%), Gaps = 14/129 (10%)
Query: 3 SQQGEWLKKWADQKIKTGIPFV-IAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q E +K Q+IK G + I GDFN +S ++ D + +
Sbjct: 242 KLQAERVKAIYQQRIKEGQTLIAITGDFNDTPDSEAL-APLLKETDLKDIFTHEKFDNGG 300
Query: 62 TCNVIKRNKSS--LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK----------LS 109
+S +DY ++ + + S
Sbjct: 301 YPGTWGGCSASNKIDYILLSPALWKKVEKGGVWRKGMWPGVRPVKWETYPELKKEVNAAS 360
Query: 110 THCPLTIEY 118
H + ++
Sbjct: 361 DHAAVWVDL 369
>gi|291515515|emb|CBK64725.1| Metal-dependent hydrolase [Alistipes shahii WAL 8301]
Length = 290
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 38/121 (31%), Gaps = 13/121 (10%)
Query: 5 QGEWLKKWADQKI-KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q E + K ++ +G P + GD N +S K+ I
Sbjct: 181 QVELITKTMKERYGDSGKPVFLGGDMNATPSSET------GKLLQKDWEILTI--TGFGT 232
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+DY + + + S + + D+ +K S H P+ ++
Sbjct: 233 FPSDNPSKCIDYIMQLKGTPKCEVVGSQILRWFKSGDV----TKASDHLPVMLDIKLPAK 288
Query: 124 N 124
N
Sbjct: 289 N 289
>gi|290986733|ref|XP_002676078.1| predicted protein [Naegleria gruberi]
gi|284089678|gb|EFC43334.1| predicted protein [Naegleria gruberi]
Length = 340
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 29/130 (22%), Gaps = 26/130 (20%)
Query: 7 EWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------------- 49
EW +K++ P + GD N I+ + D P
Sbjct: 208 EWDVDLLKYFEKLEKKKPIIWGGDLNVAISEMDIHDPLTLSKSPGFTLEERQSSPLVTKA 267
Query: 50 -----GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
K+ + + F+ NS +
Sbjct: 268 SPPFIDSFRYKNPYKKQYTY--YGYINDMRLQKKGWRIDYFVCSNSLKDKI--VNSYILE 323
Query: 105 RSKLSTHCPL 114
S H P+
Sbjct: 324 EYFGSDHLPI 333
>gi|296225531|ref|XP_002758535.1| PREDICTED: deoxyribonuclease gamma-like isoform 2 [Callithrix
jacchus]
Length = 275
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 40/111 (36%), Gaps = 4/111 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ F+ GDFN + + ++ D + ++E T N +
Sbjct: 146 KHRWKAENFIFMGDFNAGCSYVPKKAWKNIRLRIDPRFVWLIGDQEDTTVKKSTNCAYDR 205
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDFEKG 123
+ ++ + ++ S S+ + ++ + L S H P+ E+ +
Sbjct: 206 IVLRGQEIVSSIVPKSTSVFDFQKAYKLSEEKALDVSDHFPV--EFKLQSS 254
>gi|148984296|ref|ZP_01817591.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP3-BS71]
gi|225859607|ref|YP_002741117.1| exodeoxyribonuclease III [Streptococcus pneumoniae 70585]
gi|225861640|ref|YP_002743149.1| exodeoxyribonuclease III [Streptococcus pneumoniae Taiwan19F-14]
gi|298230311|ref|ZP_06963992.1| exodeoxyribonuclease III [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254703|ref|ZP_06978289.1| exodeoxyribonuclease III [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298503568|ref|YP_003725508.1| exodeoxyribonuclease III [Streptococcus pneumoniae TCH8431/19A]
gi|147923585|gb|EDK74698.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP3-BS71]
gi|225720715|gb|ACO16569.1| exodeoxyribonuclease III [Streptococcus pneumoniae 70585]
gi|225726783|gb|ACO22634.1| exodeoxyribonuclease III [Streptococcus pneumoniae Taiwan19F-14]
gi|298239163|gb|ADI70294.1| exodeoxyribonuclease III [Streptococcus pneumoniae TCH8431/19A]
gi|301800627|emb|CBW33270.1| exodeoxyribonuclease [Streptococcus pneumoniae OXC141]
gi|327390006|gb|EGE88351.1| exodeoxyribonuclease III [Streptococcus pneumoniae GA04375]
gi|332074195|gb|EGI84673.1| exodeoxyribonuclease III [Streptococcus pneumoniae GA41301]
Length = 275
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
++ + + P + GD+N N I + + + G
Sbjct: 150 AEYLAE-LDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDT 208
Query: 55 FPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +R+K+S +L N + +D+ +
Sbjct: 209 FRHVHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVTKSDMIDSGARQ--D 265
Query: 111 HCPLTIEYDF 120
H P+ +E D
Sbjct: 266 HTPIVLEIDL 275
>gi|108756804|ref|YP_634791.1| putative lipoprotein [Myxococcus xanthus DK 1622]
gi|108460684|gb|ABF85869.1| putative lipoprotein [Myxococcus xanthus DK 1622]
Length = 686
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 45/124 (36%), Gaps = 16/124 (12%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
W+K + D ++ T V+ GD+N ++ T+ + D F + + +
Sbjct: 383 WIKDYVDLRLPTQRAMVV-GDWNDDVDVSIATNP-STGVKYDTPYRNFVSDSANYRFTTQ 440
Query: 68 -----------RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ +D+ ++ + + NS ++ + R S H P+
Sbjct: 441 ALSEAGIGSTVSRSTFIDHQLVTNELWASYVPNSTQVIRPSITG---YRDNTSDHYPIIS 497
Query: 117 EYDF 120
++F
Sbjct: 498 RFNF 501
>gi|38233240|ref|NP_939007.1| putative exodeoxyribonuclease [Corynebacterium diphtheriae NCTC
13129]
gi|38199499|emb|CAE49150.1| Putative exodeoxyribonuclease [Corynebacterium diphtheriae]
Length = 301
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/92 (14%), Positives = 22/92 (23%), Gaps = 5/92 (5%)
Query: 28 DFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLI 87
D+ + D W + R E + R ++ D +
Sbjct: 215 DYTSQQRRTPANDPKW-----FDVARRLAPEDAAYTWWTYRGQAFDTNAGWRIDYQAATS 269
Query: 88 DNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S H PLT+ Y
Sbjct: 270 AMLERATRCWVDKAAAYDLRWSDHSPLTVVYS 301
>gi|223674122|pdb|3G6S|A Chain A, Crystal Structure Of The
EndonucleaseEXONUCLEASEPHOSPHATASE (BVU_0621) FROM
Bacteroides Vulgatus. Northeast Structural Genomics
Consortium Target Bvr56d
Length = 267
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 27/120 (22%), Gaps = 6/120 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L ++I P V+ GDFN S +
Sbjct: 147 RRQSALLIIRKIKEIVGERPAVVTGDFNVTDASDAYETITTNEFVXKDAYKTA----ARV 202
Query: 63 CNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
V + + S + LS H P + + E
Sbjct: 203 TGVDYTFHDFARIPAEDCEKIDFIFVTPQVLVKSCEIPAEVPEAL-LSDHNPQLADLELE 261
>gi|291416360|ref|XP_002724415.1| PREDICTED: DNase X (predicted)-like [Oryctolagus cuniculus]
gi|217418274|gb|ACK44278.1| DNase X (predicted) [Oryctolagus cuniculus]
Length = 304
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 29/101 (28%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN S+ + D + + T + + +
Sbjct: 173 QNQDVILLGDFNADCASLTKKRLSELLLRTDAGFRWAIADGDDTTVRASTHCAYDRIVLH 232
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ L + + K+S H P+ +E
Sbjct: 233 GERCQSLLQAAAAFDFPRSFQLTEEEALKISDHYPVEVELS 273
>gi|15922225|ref|NP_377894.1| exodeoxyribonuclease [Sulfolobus tokodaii str. 7]
gi|15623014|dbj|BAB67003.1| 241aa long hypothetical exodeoxyribonuclease [Sulfolobus tokodaii
str. 7]
gi|199436390|dbj|BAG70946.1| thermostable exonuclease III [Sulfolobus sp. Tu B-1]
Length = 241
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 22/125 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIG--------------DTDDFWQKMDPDGLLIR 54
++++ DQ ++ P +I GDFN + + + + +
Sbjct: 124 IEEFMDQ-LRRTKPVIICGDFNAVVERRDSSFWDENEPGLSPKEREWMNHILKKGYIDAY 182
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ + L+ D L+ S H P+
Sbjct: 183 RFINPTKIEYSWRSY----RFKWKAMRIDYCLVSEELKDKIRDCKILNVSG---SDHYPI 235
Query: 115 TIEYD 119
+E +
Sbjct: 236 LLEIE 240
>gi|333027746|ref|ZP_08455810.1| putative endonuclease/exonuclease/phosphatase [Streptomyces sp.
Tu6071]
gi|332747598|gb|EGJ78039.1| putative endonuclease/exonuclease/phosphatase [Streptomyces sp.
Tu6071]
Length = 250
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 29/118 (24%), Gaps = 16/118 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + A++ ++ GD N + D + + + N
Sbjct: 145 QARLLTERAERLGAPH--VLVGGDLNEGPEGKAFRHVAGRLRDAWAVRPWGGEFTSTAEN 202
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-STHCPLTIEYDFE 121
+R + ++ L+ + S H P+
Sbjct: 203 PYQR-------------IDAMFVSEGVEVLGCGVPTLEDADVRAASDHMPVLAVLRLP 247
>gi|218680204|ref|ZP_03528101.1| Endonuclease/exonuclease/phosphatase [Rhizobium etli CIAT 894]
Length = 208
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 30/116 (25%), Gaps = 16/116 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L ++ V+ GDFN +S + + L
Sbjct: 108 EEQAAALVALIERIWPGNEGLVVCGDFNILPDS-----ATFPILARLELSDLVTGNGLVD 162
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K L+ +I ++ + +S H L ++
Sbjct: 163 TRTSYYLKQGRF-------ADYMLVTPGVNIARFEVVETPE----VSDHRALLLDI 207
>gi|319650796|ref|ZP_08004935.1| hypothetical protein HMPREF1013_01541 [Bacillus sp. 2_A_57_CT2]
gi|317397653|gb|EFV78352.1| hypothetical protein HMPREF1013_01541 [Bacillus sp. 2_A_57_CT2]
Length = 926
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 7/107 (6%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
V+ GDFN S ++ +I + +E + N LD+
Sbjct: 695 EDPNANIVLLGDFNDFEFSNPLKALKGDEL---TNMIEKVRAEERYTYNYQGNAQVLDHI 751
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ + + I S + S H P+ I+ +
Sbjct: 752 LVSNNLAKKTEVDILHI----NSGFMEEHGRASDHDPVMIQTSLKPS 794
>gi|153809025|ref|ZP_01961693.1| hypothetical protein BACCAC_03329 [Bacteroides caccae ATCC 43185]
gi|149128358|gb|EDM19577.1| hypothetical protein BACCAC_03329 [Bacteroides caccae ATCC 43185]
Length = 315
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/143 (10%), Positives = 34/143 (23%), Gaps = 30/143 (20%)
Query: 4 QQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ ++ + K +P ++ GDFN + + D + +
Sbjct: 173 ESAYLVQDKMKELGKGKELPAILTGDFNVDQTHQSYDAFVSKGVLCDSYEKCDFRYATNG 232
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY------------------------DQ 98
+ + + F + Y +
Sbjct: 233 T-----FNDFDPDSFTESRIDHVFVSPVFKVKRYGVLTDTYRSIRGNGGKKDATDCPEEI 287
Query: 99 SDLDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ +E FE
Sbjct: 288 DIKAYQARTPSDHFPVKVELVFE 310
>gi|150376190|ref|YP_001312786.1| endonuclease/exonuclease/phosphatase [Sinorhizobium medicae WSM419]
gi|150030737|gb|ABR62853.1| Endonuclease/exonuclease/phosphatase [Sinorhizobium medicae WSM419]
Length = 242
Score = 49.1 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 33/118 (27%), Gaps = 16/118 (13%)
Query: 4 QQGEWLKK--WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W + ++AGD N S +++ LL
Sbjct: 136 RQATALLGPGWLGAMEQGKTRLILAGDLNATGRS-ASYRLLARQLKDVQLLTGNKPRPTF 194
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + LI + +VS RS S H PL E D
Sbjct: 195 PS------------RLPLLRIDHVLIGDCIEVVSCQVHSSALARS-ASDHLPLLTELD 239
>gi|303232620|ref|ZP_07319305.1| endonuclease/exonuclease/phosphatase family protein [Atopobium
vaginae PB189-T1-4]
gi|302481106|gb|EFL44181.1| endonuclease/exonuclease/phosphatase family protein [Atopobium
vaginae PB189-T1-4]
Length = 601
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/129 (10%), Positives = 33/129 (25%), Gaps = 15/129 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKIN----------SIGDTDDFWQKMDPDGLL 52
++Q + L + ++ G + GD+N + I D
Sbjct: 472 AKQLKVLNNFLTEERAKGNYVIAGGDWNHALGGSISAYPSQQQIPSWVAELNDSDLAEGF 531
Query: 53 IRFPQEKESTCNV-IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ S + F++ ++ + + S H
Sbjct: 532 RYVAPDNLSDTPTCRGDDIPYQKGVTYTTTVDGFMVSDNIDAHATNIDTEFA----SSDH 587
Query: 112 CPLTIEYDF 120
P+ + +
Sbjct: 588 NPVLLRFTL 596
>gi|285017195|ref|YP_003374906.1| exodeoxyribonuclease III protein [Xanthomonas albilineans GPE PC73]
gi|283472413|emb|CBA14918.1| probable exodeoxyribonuclease III protein [Xanthomonas albilineans]
Length = 266
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/143 (10%), Positives = 36/143 (25%), Gaps = 33/143 (23%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
+WL+ Q + G +V+ GD+N +++ + + +
Sbjct: 127 MDWLRPILVQWLHNGRDYVLCGDWNIVRSALDIKNWKSNQKNSGCLPAERDWLNGLCADR 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + R + + D + +
Sbjct: 187 AEDADAASGRGWVDAYRALHPDGQDYTWWSNRGAARANDVGWRIDYQFVTPSLRERLHGC 246
Query: 97 DQSDLDTRRSKLSTHCPLTIEYD 119
+ S H P T++Y
Sbjct: 247 AIYTEQ----RFSDHAPFTVDYR 265
>gi|253698977|ref|YP_003020166.1| endonuclease/exonuclease/phosphatase [Geobacter sp. M21]
gi|251773827|gb|ACT16408.1| Endonuclease/exonuclease/phosphatase [Geobacter sp. M21]
Length = 343
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 16/122 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ P ++AGD N D + + GL F +
Sbjct: 234 QARTVAGYISRETG---PVLVAGDLN-----SPDPSLVCRTLREAGLADAFAAAGKGYGY 285
Query: 65 VIKRN---KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
V + + ++ + S H P+ ++ +
Sbjct: 286 TYGHFLLKNRIPWLRVSWMRIDHIMTNSWLVASRCRVGT-----GRASDHRPVIADFFLK 340
Query: 122 KG 123
Sbjct: 341 NS 342
>gi|150010182|ref|YP_001304925.1| hypothetical protein BDI_3605 [Parabacteroides distasonis ATCC
8503]
gi|255012556|ref|ZP_05284682.1| hypothetical protein B2_01514 [Bacteroides sp. 2_1_7]
gi|149938606|gb|ABR45303.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
Length = 365
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 31/121 (25%), Gaps = 20/121 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ ++Q E + K G ++ GDFN S G L E
Sbjct: 265 IRAKQAEAVSKEIK--NAKGDYVLVCGDFNDTPISYAHRTI-------QGDLTDAFAESG 315
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N L + + ++ + S H PL
Sbjct: 316 RGMGITYNQNFF------WFRIDNILHSPNMTSMNCSVDKVAY-----SDHYPLWCYLKL 364
Query: 121 E 121
E
Sbjct: 365 E 365
>gi|57863772|ref|NP_001009928.1| nocturnin [Gallus gallus]
gi|33323505|gb|AAQ07476.1|AF503351_1 nocturnin [Gallus gallus]
Length = 419
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 39/125 (31%), Gaps = 7/125 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ IP +I GDFN + + ++ + + +
Sbjct: 290 CDLLQNLKSITQGAKIPLIICGDFNAEPTEEVYREFSNSSLNLNSAYKLLSPDGQSEPPY 349
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEY 118
R + + ++++ +++ +Q + S S H L ++
Sbjct: 350 TTWKIRPSGECRHTLDYIWYSQHALNVNSALGLLTEEQIGPNRLPSFNYPSDHLSLVCDF 409
Query: 119 DFEKG 123
F +
Sbjct: 410 SFNQD 414
>gi|47214833|emb|CAF95739.1| unnamed protein product [Tetraodon nigroviridis]
Length = 317
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 2/100 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GDFN + + D ++ D + T K + + V
Sbjct: 165 DNVMILGDFNADGAYVSNRDMKKIRIRSDKNFHWLIGDDVDTTASNKNSHTYDRIVVYGD 224
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEY 118
D ++ NS ++ + + K+S H P+ +E
Sbjct: 225 DMLQAVVPNSAKTFNFQKEYRLSDEQALKISDHYPVEVEL 264
>gi|121593299|ref|YP_985195.1| endonuclease/exonuclease/phosphatase [Acidovorax sp. JS42]
gi|222110021|ref|YP_002552285.1| endonuclease/exonuclease/phosphatase [Acidovorax ebreus TPSY]
gi|120605379|gb|ABM41119.1| Endonuclease/exonuclease/phosphatase [Acidovorax sp. JS42]
gi|221729465|gb|ACM32285.1| Endonuclease/exonuclease/phosphatase [Acidovorax ebreus TPSY]
Length = 255
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 18/117 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L+++ +++ P V+AGDFN ++M L + ++
Sbjct: 157 RQVAQLQRFIAREVPEDAPLVVAGDFND-------WGLQIKRMLAGFGLFEYDDAPQAFT 209
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + ++S H PL E+
Sbjct: 210 YP---------ARLPMVQLDHVYVR-GLTPLGLQVPRG-RIWWRMSDHLPLIAEFKL 255
>gi|2251234|gb|AAB62717.1| probable nocturnin protein [Mus musculus]
Length = 323
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 37/125 (29%), Gaps = 7/125 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 194 CDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSPDGQSEPPY 253
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRR--SKLSTHCPLTIEY 118
R + + + ++ +++ +Q + S H L ++
Sbjct: 254 TTWKIRTSGECRHTLDYIWYSRHALSVTSALDLLTEEQIGPNRLPSFHYPSDHLSLVCDF 313
Query: 119 DFEKG 123
F +
Sbjct: 314 SFNEE 318
>gi|299145368|ref|ZP_07038436.1| putative transmembrane endonuclease/exonuclease/phosphatase family
protein [Bacteroides sp. 3_1_23]
gi|298515859|gb|EFI39740.1| putative transmembrane endonuclease/exonuclease/phosphatase family
protein [Bacteroides sp. 3_1_23]
Length = 366
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 29/116 (25%), Gaps = 20/116 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q LK+ + P +I GDFN +S K+ F
Sbjct: 271 QANTLKQLIA---ASPYPTIICGDFNSLPSSYVYHTVKGDKLQDG-----FQTSGHGYMY 322
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
K K L + Y DL S H P+ +
Sbjct: 323 TFKFFK-------HLLRIDYILHSPEVNSTDYFSPDLTY-----SDHNPVVMRVKL 366
>gi|170093872|ref|XP_001878157.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646611|gb|EDR10856.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 617
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 5 QGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + ++ VIAGDFN I + + + D E E
Sbjct: 503 QISTIATFIKSLLQKNPLANIVIAGDFNEFIQTRSVYKP-FTPILSDIDDAAGIPELERY 561
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
V +N LD+ I + ++ + + +S++S H P
Sbjct: 562 SYVYDQNSEQLDHAFISLALRLKKVEFE---HIHANTWAPNSKSQVSDHDP 609
>gi|238060298|ref|ZP_04605007.1| endonuclease/exonuclease/phosphatase [Micromonospora sp. ATCC
39149]
gi|237882109|gb|EEP70937.1| endonuclease/exonuclease/phosphatase [Micromonospora sp. ATCC
39149]
Length = 238
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 31/119 (26%), Gaps = 17/119 (14%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q K+ + +P V D N Q + + +C
Sbjct: 136 QAAAFKR---ELAAADLPVVAGADLNEGP-DGAAWATVGQGLTDAAVAADRADRLTYSC- 190
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
R +D ++V YD D R + S H P+ ++
Sbjct: 191 -----------ADPRRRIDAVFVDPRITVVDYDVVDTPQAR-RASDHFPIVVDLLLPAA 237
>gi|292609568|ref|XP_697426.2| PREDICTED: nocturnin-like isoform 2 [Danio rerio]
Length = 378
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 9/115 (7%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES---TCNVIKRNK 70
++ ++ IP ++ GDFN + + + + D + ++ R
Sbjct: 260 EENAESAIPLIVCGDFNAEPSEDVYRNFATSSLGLDSAYKLLSTDGKTEPPYTTWKIRPS 319
Query: 71 SS----LDYFVIDRDNKNFL-IDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
LDY + + + + + L + S H L ++ F
Sbjct: 320 GESCHTLDYVWYSHRAFDVNAVLDFPTAEQIGPNRLPSYN-YPSDHLSLVCDFCF 373
>gi|67904338|ref|XP_682425.1| hypothetical protein AN9156.2 [Aspergillus nidulans FGSC A4]
gi|40742799|gb|EAA61989.1| hypothetical protein AN9156.2 [Aspergillus nidulans FGSC A4]
gi|259485420|tpe|CBF82427.1| TPA: endonuclease/exonuclease/phosphatase family protein
(AFU_orthologue; AFUA_3G09210) [Aspergillus nidulans
FGSC A4]
Length = 600
Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 27/117 (23%), Gaps = 7/117 (5%)
Query: 5 QGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q E + + ++ + GDFN + D + E
Sbjct: 486 QAEVVASFITSILEEDASAKILTTGDFNEFTFAAPLKTFVSASGLQDLDEVVGVDPLERY 545
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N LD+ + + + S H P +
Sbjct: 546 TYIYDSNHEQLDHMFVSEAL-----AEGARMEHVHVNTWVNYDDAPSDHDPSVAVLN 597
>gi|148989637|ref|ZP_01820969.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP6-BS73]
gi|147924954|gb|EDK76036.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP6-BS73]
Length = 275
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEK 59
++ P + GD+N N I + + + G F
Sbjct: 154 AELDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDTFRHVH 213
Query: 60 ES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+R+K+S +L N + +D+ + H P+
Sbjct: 214 GDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVTKSDMIDSGARQ--DHTPIV 270
Query: 116 IEYDF 120
+E D
Sbjct: 271 LEIDL 275
>gi|148993303|ref|ZP_01822843.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP9-BS68]
gi|148998707|ref|ZP_01826145.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP11-BS70]
gi|149006502|ref|ZP_01830201.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP18-BS74]
gi|168487344|ref|ZP_02711852.1| exodeoxyribonuclease III [Streptococcus pneumoniae CDC1087-00]
gi|168489877|ref|ZP_02714076.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP195]
gi|168491840|ref|ZP_02715983.1| exodeoxyribonuclease III [Streptococcus pneumoniae CDC0288-04]
gi|168574966|ref|ZP_02720929.1| exodeoxyribonuclease III [Streptococcus pneumoniae MLV-016]
gi|182684788|ref|YP_001836535.1| exodeoxyribonuclease [Streptococcus pneumoniae CGSP14]
gi|221232582|ref|YP_002511736.1| exodeoxyribonuclease [Streptococcus pneumoniae ATCC 700669]
gi|225855280|ref|YP_002736792.1| exodeoxyribonuclease III [Streptococcus pneumoniae JJA]
gi|303254644|ref|ZP_07340746.1| exodeoxyribonuclease [Streptococcus pneumoniae BS455]
gi|307068457|ref|YP_003877423.1| exonuclease III [Streptococcus pneumoniae AP200]
gi|307128039|ref|YP_003880070.1| exodeoxyribonuclease III [Streptococcus pneumoniae 670-6B]
gi|147755401|gb|EDK62450.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP11-BS70]
gi|147761800|gb|EDK68763.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP18-BS74]
gi|147928070|gb|EDK79089.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP9-BS68]
gi|182630122|gb|ACB91070.1| exodeoxyribonuclease [Streptococcus pneumoniae CGSP14]
gi|183569805|gb|EDT90333.1| exodeoxyribonuclease III [Streptococcus pneumoniae CDC1087-00]
gi|183571693|gb|EDT92221.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP195]
gi|183573869|gb|EDT94397.1| exodeoxyribonuclease III [Streptococcus pneumoniae CDC0288-04]
gi|183578942|gb|EDT99470.1| exodeoxyribonuclease III [Streptococcus pneumoniae MLV-016]
gi|220675044|emb|CAR69622.1| exodeoxyribonuclease [Streptococcus pneumoniae ATCC 700669]
gi|225724139|gb|ACO19992.1| exodeoxyribonuclease III [Streptococcus pneumoniae JJA]
gi|301794808|emb|CBW37264.1| exodeoxyribonuclease [Streptococcus pneumoniae INV104]
gi|301802537|emb|CBW35298.1| exodeoxyribonuclease [Streptococcus pneumoniae INV200]
gi|302598356|gb|EFL65400.1| exodeoxyribonuclease [Streptococcus pneumoniae BS455]
gi|306409994|gb|ADM85421.1| Exonuclease III [Streptococcus pneumoniae AP200]
gi|306485101|gb|ADM91970.1| exodeoxyribonuclease III [Streptococcus pneumoniae 670-6B]
gi|332072666|gb|EGI83149.1| exodeoxyribonuclease III [Streptococcus pneumoniae GA17570]
gi|332072995|gb|EGI83476.1| exodeoxyribonuclease III [Streptococcus pneumoniae GA17545]
gi|332199864|gb|EGJ13939.1| exodeoxyribonuclease III [Streptococcus pneumoniae GA41317]
gi|332201253|gb|EGJ15324.1| exodeoxyribonuclease III [Streptococcus pneumoniae GA47901]
Length = 275
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEK 59
++ P + GD+N N I + + + G F
Sbjct: 154 AELDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDTFRHVH 213
Query: 60 ES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+R+K+S +L N + +D+ + H P+
Sbjct: 214 GDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVTKSDMIDSGARQ--DHTPIV 270
Query: 116 IEYDF 120
+E D
Sbjct: 271 LEIDL 275
>gi|68472623|ref|XP_719630.1| potential Endonuclease/Exonuclease/Phosphatase [Candida albicans
SC5314]
gi|68472882|ref|XP_719506.1| potential Endonuclease/Exonuclease/Phosphatase [Candida albicans
SC5314]
gi|46441327|gb|EAL00625.1| potential Endonuclease/Exonuclease/Phosphatase [Candida albicans
SC5314]
gi|46441456|gb|EAL00753.1| potential Endonuclease/Exonuclease/Phosphatase [Candida albicans
SC5314]
gi|238881882|gb|EEQ45520.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 303
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 30/115 (26%), Gaps = 2/115 (1%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ + ++ I P + GDFN F M + +
Sbjct: 188 SAKLIIQYIKS-IPNYFPTFLCGDFNSLDTDKA-YATFSHYMVDASHVAEKKYDTNLKTF 245
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N +S I + ++ +L + S H P+ Y
Sbjct: 246 SGFGNGTSYSIDFIWSPMDTNDNSGTNALSYTVLDNLFDEGHRFSDHRPVMARYS 300
>gi|302546317|ref|ZP_07298659.1| endonuclease/exonuclease/phosphatase [Streptomyces hygroscopicus
ATCC 53653]
gi|302463935|gb|EFL27028.1| endonuclease/exonuclease/phosphatase [Streptomyces himastatinicus
ATCC 53653]
Length = 636
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 29/118 (24%), Gaps = 14/118 (11%)
Query: 5 QGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + V+AGD N S + + D + E+
Sbjct: 529 QATAVNTFVKSLLAADPKAAVVVAGDLNDYQFSPALSALTKGGVLTDLVTRFPRNERYGY 588
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR-RSKLSTHCPLTIEYD 119
+ + L + YD L+ + S H P
Sbjct: 589 VY-----------NGNSQVLDHILTSRALRGPDYDIVHLNAEFADQSSDHDPQITRLR 635
>gi|149638074|ref|XP_001509853.1| PREDICTED: similar to CCR4 carbon catabolite repression 4-like
[Ornithorhynchus anatinus]
Length = 617
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/124 (9%), Positives = 28/124 (22%), Gaps = 7/124 (5%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KESTC 63
+ L+ IP ++ GDFN + ++ + + +
Sbjct: 353 DLLRNLCAITRGAEIPLIVCGDFNAEPTEEVYRHFATSSLNLNSAYKLLSSDGQTEPPYT 412
Query: 64 NVIKRNKSSLDY----FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R + + + S H L ++
Sbjct: 413 TWKVRASGEARHTLDYIWYSQRALRVESALGLLTEEQIGPNRLPSLHYPSDHLSLVCDFG 472
Query: 120 FEKG 123
F +
Sbjct: 473 FRED 476
>gi|328709897|ref|XP_003244099.1| PREDICTED: nocturnin-like isoform 2 [Acyrthosiphon pisum]
gi|328709899|ref|XP_001951703.2| PREDICTED: nocturnin-like isoform 1 [Acyrthosiphon pisum]
Length = 417
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 6/126 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ ++QG+ L ++ P ++ GDFN + + P + +
Sbjct: 285 LRNEQGKDLLQFISSH-AADRPTIVCGDFNAEPTEPVYSTMCSCSYLPLDSAYKLSGSEP 343
Query: 61 STCNVIKRNKSSL--DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR---RSKLSTHCPLT 115
+ R K+ L ++ + + + R + S H L
Sbjct: 344 LYTSWKIRGGEGEVMHTIDYMFYTKHKLTVSNILDMPKEIDIGENRVPSMTYPSDHFSLI 403
Query: 116 IEYDFE 121
++ F
Sbjct: 404 SDFYFN 409
>gi|325967886|ref|YP_004244078.1| exonuclease [Vulcanisaeta moutnovskia 768-28]
gi|323707089|gb|ADY00576.1| exonuclease [Vulcanisaeta moutnovskia 768-28]
Length = 246
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 31/126 (24%), Gaps = 25/126 (19%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIG--------------DTDDFWQKMDPD--GL 51
++K+ +++ P ++ GDFN + I + Q +
Sbjct: 127 AIEKFL-ANLRSKKPIIMCGDFNIARDKIDSSFWDEKHPGLTLEERAWLNQFLKSGYIDT 185
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ R ++ L + S H
Sbjct: 186 FRELHPNAKVYTWHSYR------EKWRAMRIDYCIVSKELMSKVRKAEILT--NIEGSDH 237
Query: 112 CPLTIE 117
P+ IE
Sbjct: 238 VPVMIE 243
>gi|291448720|ref|ZP_06588110.1| large secreted protein [Streptomyces roseosporus NRRL 15998]
gi|291351667|gb|EFE78571.1| large secreted protein [Streptomyces roseosporus NRRL 15998]
Length = 645
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 29/118 (24%), Gaps = 14/118 (11%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ + + +K V GDFN S K + E+
Sbjct: 531 QQAAEVNTFVASLLKADKSAQVVALGDFNDFEFSPTMKALTKGKALKPLISTLPVGER-- 588
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEY 118
V N + + L + YD + S H P +
Sbjct: 589 YSYVFDGN---------SQTLDHILTSPGVRRLDYDVVHINAEFADQASDHDPQVVRI 637
>gi|269125611|ref|YP_003298981.1| endonuclease/exonuclease/phosphatase [Thermomonospora curvata DSM
43183]
gi|268310569|gb|ACY96943.1| Endonuclease/exonuclease/phosphatase [Thermomonospora curvata DSM
43183]
Length = 573
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/109 (15%), Positives = 29/109 (26%), Gaps = 15/109 (13%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN- 82
++ GD N + G RF +V LD+ +
Sbjct: 459 LVIGDLNSYGREDPIKTLAASGL--AGQTERFVPAGRRYSHVFDGQAGELDHVLAPPALA 516
Query: 83 -------KNFLIDNSFSIVSYDQSDLDTRRSKL-----STHCPLTIEYD 119
+ + IV Y+ D R + S H P+ +
Sbjct: 517 RWITGVTIWHINADEPPIVDYNTEDNPPRLYRPDAYRSSDHDPVIVGLR 565
>gi|239945254|ref|ZP_04697191.1| putative endonuclease/exonuclease/phosphatase family protein
[Streptomyces roseosporus NRRL 15998]
gi|239991716|ref|ZP_04712380.1| putative endonuclease/exonuclease/phosphatase family protein
[Streptomyces roseosporus NRRL 11379]
Length = 803
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 29/118 (24%), Gaps = 14/118 (11%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ + + +K V GDFN S K + E+
Sbjct: 689 QQAAEVNTFVASLLKADKSAQVVALGDFNDFEFSPTMKALTKGKALKPLISTLPVGER-- 746
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEY 118
V N + + L + YD + S H P +
Sbjct: 747 YSYVFDGN---------SQTLDHILTSPGVRRLDYDVVHINAEFADQASDHDPQVVRI 795
>gi|223647596|gb|ACN10556.1| Deoxyribonuclease gamma precursor [Salmo salar]
Length = 298
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 2/112 (1%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++ T +I GDFN + ++ D + + T + +
Sbjct: 185 KQRWTSKNVIIMGDFNADCGYVPKKQWSSIRLRSDTSFLWLTGDTIDTTVKESTDCAYDR 244
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDFEKGN 124
+ + S + + Q+ T L S H P+ I + N
Sbjct: 245 VVLHGDKMIQAVKPTSLDVFDFRQAYGLTELQALAVSDHYPVCITVNAAPRN 296
>gi|169833563|ref|YP_001695212.1| exodeoxyribonuclease III [Streptococcus pneumoniae Hungary19A-6]
gi|168996065|gb|ACA36677.1| exodeoxyribonuclease III [Streptococcus pneumoniae Hungary19A-6]
Length = 275
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEK 59
++ P + GD+N N I + + + G F
Sbjct: 154 AELDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDTFRHVH 213
Query: 60 ES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+R+K+S +L N + +D+ + H P+
Sbjct: 214 GDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVTKSDMIDSGARQ--DHTPIV 270
Query: 116 IEYDF 120
+E D
Sbjct: 271 LEIDL 275
>gi|28198064|ref|NP_778378.1| exodeoxyribonuclease [Xylella fastidiosa Temecula1]
gi|182680692|ref|YP_001828852.1| exodeoxyribonuclease III Xth [Xylella fastidiosa M23]
gi|28056124|gb|AAO28027.1| exodeoxyribonuclease [Xylella fastidiosa Temecula1]
gi|182630802|gb|ACB91578.1| exodeoxyribonuclease III Xth [Xylella fastidiosa M23]
Length = 266
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 36/144 (25%), Gaps = 33/144 (22%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
WL+ + + +G +V+ GD+N +++ + + +
Sbjct: 127 MRWLRPILCEWLLSGRDYVLCGDWNIVRSALDIRNWKSNQKNSGCLPLERDWLNGLCADS 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ E R + ++ +
Sbjct: 187 LHDVNSAQGRGWVDTYRVLHPQGEDYTWWSNRGAARVNNVGW--RIDYQFVSPGLRERVS 244
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
+ + S H P T+EY
Sbjct: 245 RCAIYC--EQRFSDHAPYTVEYVL 266
>gi|33563248|ref|NP_033964.1| nocturnin [Mus musculus]
gi|17380366|sp|O35710|NOCT_MOUSE RecName: Full=Nocturnin; AltName: Full=CCR4 protein homolog
gi|5924314|gb|AAD56547.1|AF183960_1 carbon catabolite repression 4 protein homolog [Mus musculus]
gi|9885278|gb|AAG01384.1|AF199491_1 NOCTURNIN [Mus musculus]
gi|26352748|dbj|BAC40004.1| unnamed protein product [Mus musculus]
gi|148703247|gb|EDL35194.1| CCR4 carbon catabolite repression 4-like (S. cerevisiae), isoform
CRA_c [Mus musculus]
gi|187952215|gb|AAI39370.1| CCR4 carbon catabolite repression 4-like (S. cerevisiae) [Mus
musculus]
gi|223461128|gb|AAI39371.1| CCR4 carbon catabolite repression 4-like (S. cerevisiae) [Mus
musculus]
Length = 429
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 37/125 (29%), Gaps = 7/125 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 300 CDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSPDGQSEPPY 359
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRR--SKLSTHCPLTIEY 118
R + + + ++ +++ +Q + S H L ++
Sbjct: 360 TTWKIRTSGECRHTLDYIWYSRHALSVTSALDLLTEEQIGPNRLPSFHYPSDHLSLVCDF 419
Query: 119 DFEKG 123
F +
Sbjct: 420 SFNEE 424
>gi|163839057|ref|YP_001623462.1| exodeoxyribonuclease III [Renibacterium salmoninarum ATCC 33209]
gi|162952533|gb|ABY22048.1| exodeoxyribonuclease III [Renibacterium salmoninarum ATCC 33209]
Length = 288
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/134 (8%), Positives = 33/134 (24%), Gaps = 26/134 (19%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------------WQKMDPDG 50
+ +I GD N ++ + +
Sbjct: 153 RMPELAAHSDYALIVGDLNVGHTTLDIKNWKGNVKNAGFLPEERAYFDRFFSANDLKDGL 212
Query: 51 LLIRFPQE-----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+E + +R ++ + D + + + +
Sbjct: 213 GWKDVQREVAGQVEGPYTWWSQRGQAFDNNTGWRIDYQMATPELFAAAGDVVVDRAASYD 272
Query: 106 SKLSTHCPLTIEYD 119
++ S H PL ++Y+
Sbjct: 273 TRRSDHAPLVVDYN 286
>gi|146297973|ref|YP_001192564.1| endonuclease/exonuclease/phosphatase [Flavobacterium johnsoniae
UW101]
gi|146152391|gb|ABQ03245.1| Endonuclease/exonuclease/phosphatase [Flavobacterium johnsoniae
UW101]
Length = 305
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 33/120 (27%), Gaps = 20/120 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E K+ K P +I GD N S + + D E
Sbjct: 205 QEQAEIFKEHIK---KCKYPIIICGDMNNSPFSYVYRNIKGKLKDAFEEA----GEGFGA 257
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
K + +DY D K ++ + S H P+ ++
Sbjct: 258 TYKFKYYPARIDYIFTDTKMKVKQFESFPDFEN-------------SDHYPIMTRLSIDQ 304
>gi|74143502|dbj|BAE28819.1| unnamed protein product [Mus musculus]
Length = 429
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 37/125 (29%), Gaps = 7/125 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 300 CDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSPDGQSEPPY 359
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRR--SKLSTHCPLTIEY 118
R + + + ++ +++ +Q + S H L ++
Sbjct: 360 TTWKIRTSGECRHTLDYIWYSRHALSVTSALDLLTEEQIGPNRLPSFHYPSDHLSLVCDF 419
Query: 119 DFEKG 123
F +
Sbjct: 420 SFNEE 424
>gi|162448958|ref|YP_001611325.1| endonuclease/exonuclease/phosphatase family protein [Sorangium
cellulosum 'So ce 56']
gi|161159540|emb|CAN90845.1| endonuclease/exonuclease/phosphatase family [Sorangium cellulosum
'So ce 56']
Length = 1174
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 12/120 (10%)
Query: 3 SQQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
QQ + + Q + + V+ GD N S + LI +E
Sbjct: 851 RQQATVVAGFVRQILDSDPAANVVVLGDLNDFQFSAPLGILKDAGL---TTLIETLPPEE 907
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYD 119
V N SLD+ ++ + +V +D + S H P +
Sbjct: 908 RYTYVFDGNGQSLDHVLVSANL------AGPKLVGFDVVHVNAEFADQASDHDPGVARFR 961
>gi|241662441|ref|YP_002980801.1| endonuclease/exonuclease/phosphatase [Ralstonia pickettii 12D]
gi|240864468|gb|ACS62129.1| Endonuclease/exonuclease/phosphatase [Ralstonia pickettii 12D]
Length = 818
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/137 (8%), Positives = 33/137 (24%), Gaps = 22/137 (16%)
Query: 4 QQGEWLKKW--ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + W I ++ GD N + ++ +F ++
Sbjct: 631 RAAGLIADWLAISPTGVADIGKLLIGDLNSYAKEDPV--VLFADKGYADMVAKFV-GTDA 687
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-----------------LDTR 104
V +D+ + + ++ D+
Sbjct: 688 YSYVYGGEAGYIDHALATSGLAERVRAVHEWHINADEPIALEYSFAHKSAEQQQTFYAPD 747
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H P+ ++
Sbjct: 748 AYRSSDHDPVLVDLALS 764
>gi|145344271|ref|XP_001416660.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576886|gb|ABO94953.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 269
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/140 (8%), Positives = 22/140 (15%), Gaps = 29/140 (20%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM-------------------- 46
++ + + P V GD N + +
Sbjct: 133 RDMRAHLKE-LDAKKPVVYMGDLNVAHLDSDIWNVGASHIKKSAGTTPQEREAFGVMLEE 191
Query: 47 --DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD----QSD 100
D R + L D
Sbjct: 192 NDLRDAFRHFHGDAVGWFSYWSVRAGNRPFNKG--LRLDYTLASKRVFDGGADGVEVVDA 249
Query: 101 LDTRRSKLSTHCPLTIEYDF 120
+ S H P+ +
Sbjct: 250 FILDKVLGSDHAPVGVTLAL 269
>gi|9885288|gb|AAG01389.1|AF199494_1 nocturnin [Homo sapiens]
Length = 278
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 149 CDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPPY 208
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEY 118
R + + + ++ +++ +Q + S S H L ++
Sbjct: 209 TTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDF 268
Query: 119 DFEKGN 124
F + +
Sbjct: 269 SFTEES 274
>gi|332991677|gb|AEF01732.1| Endonuclease/exonuclease/phosphatase [Alteromonas sp. SN2]
Length = 242
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 20/123 (16%)
Query: 3 SQQGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q L + +Q+++ P V+AGDFN + ++ + FP +
Sbjct: 133 RSQFALLHDYLEQRMQAHPMPLVLAGDFNEWQFFSRAFTSLNKLLNQHKVGATFPSQFPI 192
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + ++ + + S S H P+ ++
Sbjct: 193 FS------------------LDRVWVSDDITVSECKKLTSK-KASVFSDHLPVQLDIRLP 233
Query: 122 KGN 124
+ N
Sbjct: 234 EAN 236
>gi|311895360|dbj|BAJ27768.1| hypothetical protein KSE_19440 [Kitasatospora setae KM-6054]
Length = 809
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 10/117 (8%)
Query: 4 QQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + + + + V GDFN S + D + +E+
Sbjct: 699 KQATVEQAFVAKLLAADPKARIVSLGDFNDYQFSPALQTLTKDGVLRDLVNELPAEER-- 756
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
V + N LD+ ++ K ++ + ++ S H P +
Sbjct: 757 YSYVYQGNSQVLDHILVSPALKPEKTHYDVVHINSEF------AAQASDHDPQVVRI 807
>gi|327273914|ref|XP_003221724.1| PREDICTED: nocturnin-like [Anolis carolinensis]
Length = 375
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 7/125 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 246 ADLLENLKRITHEAEIPLIVCGDFNADPTEEVYKEFSTSSLNLNSAYKLLSADGLSEPPY 305
Query: 63 CNVIKRNKSS----LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R LDY + S + + S H L ++
Sbjct: 306 TTWKIRPSGECRHTLDYIWYSQHALKVDSALSLLTEEQIGPNRLPSFNYPSDHLSLVCDF 365
Query: 119 DFEKG 123
F +
Sbjct: 366 TFNED 370
>gi|212691650|ref|ZP_03299778.1| hypothetical protein BACDOR_01145 [Bacteroides dorei DSM 17855]
gi|237711947|ref|ZP_04542428.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237725796|ref|ZP_04556277.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|212665839|gb|EEB26411.1| hypothetical protein BACDOR_01145 [Bacteroides dorei DSM 17855]
gi|229435604|gb|EEO45681.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229454642|gb|EEO60363.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 281
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 27/119 (22%), Gaps = 6/119 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L ++I P V+ GDFN S +
Sbjct: 168 RRQSALLIIRKIKEIVGERPAVVTGDFNVTDASDAYETITTNEFVMKDAYKTA----ARV 223
Query: 63 CNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V + + + + LS H P + +F
Sbjct: 224 TGVDYTFHDFARIPAEDCEKIDFIFVTPQVLVKNCEIPAEVPEAL-LSDHNPQLADLEF 281
>gi|307705505|ref|ZP_07642359.1| exodeoxyribonuclease III [Streptococcus mitis SK597]
gi|307620963|gb|EFO00046.1| exodeoxyribonuclease III [Streptococcus mitis SK597]
Length = 275
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
++ + + P + GD+N N I + + + G
Sbjct: 150 AEYLAE-LDKQKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDT 208
Query: 55 FPQ----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F E +R+K+S +L N + +D+ +
Sbjct: 209 FRHIHGDAPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADNVTKSDMIDSGARQ--D 265
Query: 111 HCPLTIEYDF 120
H P+ +E +
Sbjct: 266 HTPIVMEIEL 275
>gi|84490435|ref|NP_031896.3| deoxyribonuclease gamma precursor [Mus musculus]
gi|3913469|sp|O55070|DNSL3_MOUSE RecName: Full=Deoxyribonuclease gamma; Short=DNase gamma; AltName:
Full=DNase I homolog protein DHP2; AltName:
Full=Deoxyribonuclease I-like 3; Short=DNase I-like 3;
AltName: Full=Liver and spleen DNase; Short=LS-DNase;
Short=LSD; Flags: Precursor
gi|2905788|gb|AAC35753.1| liver and spleen DNase precursor [Mus musculus]
gi|4098208|gb|AAD09222.1| DNase gamma [Mus musculus]
gi|28192377|gb|AAK07733.1| DNase gamma [Mus musculus]
gi|148688630|gb|EDL20577.1| deoxyribonuclease 1-like 3 [Mus musculus]
Length = 310
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
F+ GDFN + + ++ D + ++E T + + + +
Sbjct: 187 ENFIFMGDFNAGCSYVPKKAWQNIRLRTDPKFVWLIGDQEDTTVKKSTSCAYDRIVLCGQ 246
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDFEKG 123
+ N ++ S + + ++ + L S H P+ E+ +
Sbjct: 247 EIVNSVVPRSSGVFDFQKAYDLSEEEALDVSDHFPV--EFKLQSS 289
>gi|326388588|ref|ZP_08210181.1| exodeoxyribonuclease III [Novosphingobium nitrogenifigens DSM
19370]
gi|326206839|gb|EGD57663.1| exodeoxyribonuclease III [Novosphingobium nitrogenifigens DSM
19370]
Length = 261
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 27/121 (22%), Gaps = 24/121 (19%)
Query: 20 GIPFVIAGDFNRKINSIGDTD--------------------DFWQKMDPDGLLIRFPQEK 59
P ++ GDFN D D P +
Sbjct: 141 DRPTLLVGDFNIAPLECDVYDHKALLKVVSHTPVEVEALGRLAAAHDWVDLGRKHIPAPE 200
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--YDQSDLDTRRSKLSTHCPLTIE 117
+ R S R + + S + + R + S H PL
Sbjct: 201 RNYSWWSYR--SYWRAKDQGRRLDHMWASPEVAARSQGHRFVEETRRWEQPSDHIPLITG 258
Query: 118 Y 118
+
Sbjct: 259 F 259
>gi|149024967|ref|ZP_01836347.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP23-BS72]
gi|168494239|ref|ZP_02718382.1| exodeoxyribonuclease III [Streptococcus pneumoniae CDC3059-06]
gi|147929460|gb|EDK80455.1| exodeoxyribonuclease III [Streptococcus pneumoniae SP23-BS72]
gi|183575787|gb|EDT96315.1| exodeoxyribonuclease III [Streptococcus pneumoniae CDC3059-06]
Length = 275
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 42/139 (30%), Gaps = 25/139 (17%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQK 45
+Q W K+A+ K+ P + GD+N N I + +
Sbjct: 141 ERQV-WDAKYAEYLAKLDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTN 199
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N + +
Sbjct: 200 LLATGFTDTFRHVHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVTKSDMI 258
Query: 102 DTRRSKLSTHCPLTIEYDF 120
D+ + H P+ +E D
Sbjct: 259 DSGARQ--DHTPIVLEIDL 275
>gi|146320518|ref|YP_001200229.1| 3'-exo-deoxyribonuclease [Streptococcus suis 98HAH33]
gi|145691324|gb|ABP91829.1| putative 3'-exo-deoxyribonuclease [Streptococcus suis 98HAH33]
Length = 276
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF-------------- 42
L + + W ++AD K+ + P + GD+N I +
Sbjct: 137 LKRLADRQIWDVQYADYLAKLDSHKPVLATGDYNVAHKEIDLANPASNRQSPGFTDEERQ 196
Query: 43 -WQKMDPDGLLIRFPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + G F + +R+++S +L+ + +
Sbjct: 197 GFTNLLAKGFTDTFRHLHGDVLNAYTWWAQRSRTSKIN-NTGWRIDYWLVSDRIADKVSK 255
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+D+ + H P+ +E F
Sbjct: 256 SDMIDSGARQ--DHTPIVMEISF 276
>gi|15215119|gb|AAH12671.1| Deoxyribonuclease 1-like 3 [Mus musculus]
gi|74178913|dbj|BAE42693.1| unnamed protein product [Mus musculus]
gi|74186239|dbj|BAE42910.1| unnamed protein product [Mus musculus]
Length = 310
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
F+ GDFN + + ++ D + ++E T + + + +
Sbjct: 187 ENFIFMGDFNAGCSYVPKKAWQNIRLRTDPKFVWLIGDQEDTTVKKSTSCAYDRIVLCGQ 246
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDFEKG 123
+ N ++ S + + ++ + L S H P+ E+ +
Sbjct: 247 EIVNSVVPRSSGVFDFQKAYDLSEEEALDVSDHFPV--EFKLQSS 289
>gi|74217725|dbj|BAE33589.1| unnamed protein product [Mus musculus]
Length = 310
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
F+ GDFN + + ++ D + ++E T + + + +
Sbjct: 187 ENFIFMGDFNAGCSYVPKKAWQNIRLRTDPKFVWLIGDQEDTTVKKSTSCAYDRIVLCGQ 246
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDFEKG 123
+ N ++ S + + ++ + L S H P+ E+ +
Sbjct: 247 EIVNSVVPRSSGVFDFQKAYDLSEEEALDVSDHFPV--EFKLQSS 289
>gi|319407783|emb|CBI81434.1| exodeoxyribonuclease III [Bartonella sp. 1-1C]
Length = 272
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 29/135 (21%), Gaps = 24/135 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIR-- 54
+ G+ ++ GD N G +
Sbjct: 139 IRADHRDGLESLLLGDLNIAPLPEDVWSHKQLLKVVSHTPIETERLQALCCEGGWVDLMR 198
Query: 55 --FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLST 110
FP + R + R + + + S
Sbjct: 199 MKFPIPTKLYTWWSYRARDWAL-SDRGRRLDHIWSSPNLVPFVKELTIFRDTRGWPQPSD 257
Query: 111 HCPLTIEYDFEKGNV 125
H P+ +DF GN+
Sbjct: 258 HVPVQTLFDF-SGNL 271
>gi|256839005|ref|ZP_05544515.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256739924|gb|EEU53248.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 365
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 31/121 (25%), Gaps = 20/121 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ ++Q E + K G ++ GDFN S MD E
Sbjct: 265 IRAKQAEAVSKEIK--NAKGDYVLVCGDFNDTPISYAHRTIQGDLMD-------AFAESG 315
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N L + + ++ + S H PL
Sbjct: 316 RGMGITYNQNFF------WFRIDNILHSPNMTSMNCSVDKVAY-----SDHYPLWCYLKL 364
Query: 121 E 121
E
Sbjct: 365 E 365
>gi|160885982|ref|ZP_02066985.1| hypothetical protein BACOVA_03988 [Bacteroides ovatus ATCC 8483]
gi|156108795|gb|EDO10540.1| hypothetical protein BACOVA_03988 [Bacteroides ovatus ATCC 8483]
Length = 366
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 29/116 (25%), Gaps = 20/116 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q LK+ + P +I GDFN +S K+ F
Sbjct: 271 QANTLKQLIA---ASPYPTIICGDFNSLPSSYVYHTVKGDKLQDG-----FQTSGHGYMY 322
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
K K L + Y DL S H P+ +
Sbjct: 323 TFKFFK-------HLLRIDYILHSPELNSTDYFSPDLTY-----SDHNPVVMRVKL 366
>gi|325296913|ref|NP_001003774.2| deoxyribonuclease I-like 3 [Danio rerio]
Length = 270
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 2/100 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GDFN + + D ++ D + E T + + V
Sbjct: 161 DNIMILGDFNADGSYVSDKKMKQIRIRSDPEFHWLISDDEDTTASTHNDNTYDRIVVYGD 220
Query: 81 DNKNFLIDNSFSIVSYDQ--SDLDTRRSKLSTHCPLTIEY 118
D ++ S ++ S + K+S H P+ +E
Sbjct: 221 DMMLAVVPGSAKPFNFQTAFSLTEEDALKVSDHYPVEVEL 260
>gi|316935446|ref|YP_004110428.1| 5'-nucleotidase domain-containing protein [Rhodopseudomonas
palustris DX-1]
gi|315603160|gb|ADU45695.1| 5'-Nucleotidase domain protein [Rhodopseudomonas palustris DX-1]
Length = 2775
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 35/122 (28%), Gaps = 20/122 (16%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
D ++ GDFN + ++ G +E + V +L
Sbjct: 850 DPTGSNDPDVMLLGDFNGYAKEQS-----TKIIETAGFENLHSRENGAYSYVFDGQTGTL 904
Query: 74 DYFVIDRDN--------KNFLIDNSFSIVSYDQSD-------LDTRRSKLSTHCPLTIEY 118
DY + + + + Y+ + +++S H P+ +
Sbjct: 905 DYAFTNGSLGSQVSGVTTWHINADEADALDYNTDYGRDTSIFDGSAPTRVSDHDPVVVGL 964
Query: 119 DF 120
D
Sbjct: 965 DL 966
>gi|227485102|ref|ZP_03915418.1| endonuclease/exonuclease/phosphatase family protein [Anaerococcus
lactolyticus ATCC 51172]
gi|227236935|gb|EEI86950.1| endonuclease/exonuclease/phosphatase family protein [Anaerococcus
lactolyticus ATCC 51172]
Length = 353
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 46/123 (37%), Gaps = 5/123 (4%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + ++ G ++ GDFN+++ + + +P + +
Sbjct: 229 QTKQIIAFMTEEYNKGNYLIVGGDFNQELRKGYEANVPEGIWNPSPFPYDYLTDNIKPTF 288
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL----STHCPLTIEYDF 120
N S L++ D ++ I + F + + + + S H P+ +E+
Sbjct: 289 DENTNSSRLNHKPYDPNDSYECIIDGFLVSD-NVEVKSVKGQAIGFVNSDHNPVLLEFSL 347
Query: 121 EKG 123
++
Sbjct: 348 KEN 350
>gi|260170561|ref|ZP_05756973.1| hypothetical protein BacD2_01735 [Bacteroides sp. D2]
gi|315918907|ref|ZP_07915147.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313692782|gb|EFS29617.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 366
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 29/116 (25%), Gaps = 20/116 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q LK+ + P ++ GDFN +S K+ F
Sbjct: 271 QANTLKQLIA---ASPYPTIVCGDFNSLPSSYVYHTVKGDKLQDG-----FQTSGHGYMY 322
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
K K L + Y DL S H P+ +
Sbjct: 323 TFKFFK-------HLLRIDYILHSPELNSTDYFSPDLTY-----SDHNPVVMRVKL 366
>gi|296195555|ref|XP_002745450.1| PREDICTED: nocturnin [Callithrix jacchus]
Length = 428
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 299 CDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPPY 358
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEY 118
R + + + ++ +++ +Q + S S H L ++
Sbjct: 359 TTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDF 418
Query: 119 DFEKGN 124
F + +
Sbjct: 419 SFTEES 424
>gi|196017560|ref|XP_002118569.1| hypothetical protein TRIADDRAFT_62597 [Trichoplax adhaerens]
gi|190578721|gb|EDV18945.1| hypothetical protein TRIADDRAFT_62597 [Trichoplax adhaerens]
Length = 150
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 36/132 (27%), Gaps = 22/132 (16%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKM 46
+Q EW + Q + P ++ GD N I + + K+
Sbjct: 18 RQ-EWDADFRKYLQGLDRIKPVILCGDLNVSHLEIDLANPKTNTKTAGFTKEEREGFGKL 76
Query: 47 DPDGLLIRFPQEKESTC--NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
G + F + S+ I F+ + +
Sbjct: 77 LDCGFIDTFRHFYPNKTSAYSFWSYMSNARSKNIGWRLDYFVTSKNLIPNVA--DSIIRS 134
Query: 105 RSKLSTHCPLTI 116
+ S HCP+ +
Sbjct: 135 EIEGSDHCPIEL 146
>gi|326798495|ref|YP_004316314.1| endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
gi|326549259|gb|ADZ77644.1| Endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
Length = 268
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 31/121 (25%), Gaps = 19/121 (15%)
Query: 2 LSQQGEWLKK--WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
L +Q L+ + P ++ GDFN K S
Sbjct: 165 LKEQNRLLQAEAIVKKLSTYSQPVILGGDFNAKPESDVINHF------DTYFSRSKTSGS 218
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +D+ + + + + Y S H P+ +E
Sbjct: 219 AAFTIPEVNPDREIDFIMFRPKKRFQSVRHEVIKEPY-----------ASDHLPVMVELT 267
Query: 120 F 120
+
Sbjct: 268 Y 268
>gi|172039538|ref|YP_001806039.1| hypothetical protein cce_4625 [Cyanothece sp. ATCC 51142]
gi|171700992|gb|ACB53973.1| hypothetical protein cce_4625 [Cyanothece sp. ATCC 51142]
Length = 1252
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 19/134 (14%)
Query: 3 SQQGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDG---------- 50
+Q + + + D + V+ GD N +
Sbjct: 991 REQAQAVNDFVDGVLSNDPNGNVVVLGDLNEFEFVSPLPILEGTLESTNNGQETITGGDA 1050
Query: 51 ---LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
L+ E E + + N LD+ ++ + + IV+ + S+ S
Sbjct: 1051 VLSNLVNNIAEDERYSFIFQGNSQQLDHILVS---DSLFNNAEIDIVNIN-SEFAATESL 1106
Query: 108 LSTHCPLTIEYDFE 121
S H P+ + FE
Sbjct: 1107 ASDHDPVLASFTFE 1120
>gi|323463737|gb|ADX75890.1| endonuclease/exonuclease/phosphatase family protein [Staphylococcus
pseudintermedius ED99]
Length = 623
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 7/106 (6%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
Q+ + GD+N S + + + + V + N +LD
Sbjct: 514 QQQNPNAAIISVGDYNDFQWSKPLKTFESYGLTNKVNDV---PKNKRYSYVYQGNTQTLD 570
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ ++ K + SD + S H P+ + DF
Sbjct: 571 HILVSEHLKRQTKLDMIH----VNSDFTDMAGRASDHDPILAQIDF 612
>gi|5924316|gb|AAD56548.1| carbon catabolite repression 4 protein homolog [Homo sapiens]
Length = 431
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 302 CDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSNLNLNSAYKLLSADGQSEPPY 361
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEY 118
R + + + ++ +++ +Q + S S H L ++
Sbjct: 362 TTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDF 421
Query: 119 DFEKGN 124
F + +
Sbjct: 422 SFTEES 427
>gi|319893216|ref|YP_004150091.1| Endonuclease/Exonuclease/phosphatase family protein [Staphylococcus
pseudintermedius HKU10-03]
gi|317162912|gb|ADV06455.1| Endonuclease/Exonuclease/phosphatase family protein [Staphylococcus
pseudintermedius HKU10-03]
Length = 623
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 7/106 (6%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
Q+ + GD+N S + + + + V + N +LD
Sbjct: 514 QQQNPNAAIISVGDYNDFQWSKPLKTFESYGLTNKVKDV---PKNKRYSYVYQGNTQTLD 570
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ ++ K + SD + S H P+ + DF
Sbjct: 571 HILVSEHLKRQTKLDMIH----VNSDFTDMAGRASDHDPILAQIDF 612
>gi|227877707|ref|ZP_03995743.1| endonuclease-exonuclease-phosphatase family protein [Lactobacillus
crispatus JV-V01]
gi|227862695|gb|EEJ70178.1| endonuclease-exonuclease-phosphatase family protein [Lactobacillus
crispatus JV-V01]
Length = 339
Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 42/133 (31%), Gaps = 16/133 (12%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKI-----------NSIGDT-DDFWQKMDP 48
M Q + + +++ + G ++ GDFN + I QKM
Sbjct: 211 MRKAQMKLISSVMEKEYRRGNYVIVGGDFNHALGKDMMTHFEHQEEIPSWVSVLDQKMLS 270
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ Q +E+ V + F++ + Y+ +
Sbjct: 271 KDFTMIKAQNRENVATVRATDMKYDPKVNYMTICDGFIVSKNVQAKVYNINTHFEYA--- 327
Query: 109 STHCPLTIEYDFE 121
H P+ +E++ +
Sbjct: 328 -DHNPVRLEFELK 339
>gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040474|gb|ACT57270.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 231
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGL 51
ML+ Q WLK+W DQK +PF+IAGDFN + G D+ WQK++ D
Sbjct: 159 MLNLQATWLKQWVDQKNNLNMPFIIAGDFNRKINHSHSGIKDELWQKINQDNT 211
>gi|164426814|ref|XP_961458.2| hypothetical protein NCU03682 [Neurospora crassa OR74A]
gi|157071489|gb|EAA32222.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 289
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 29/111 (26%), Gaps = 2/111 (1%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN-VIKRN 69
+W + P V+ GD N FP E + + +
Sbjct: 178 EWRRTHGDSYPPLVLGGDLNSTPTDQAYKTLTSSDSGLQDTSAVFPDELKYGNRDITYTS 237
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYD 119
D D + + + + LS H P+ ++ +
Sbjct: 238 FGEPDEEPKTIDFLFVQRPPTLILRLFGILPNKFDDGVFLSDHRPIFVDME 288
>gi|50926167|gb|AAH79505.1| Zgc:101000 [Danio rerio]
Length = 270
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 2/100 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GDFN + + D ++ D + E T + + +
Sbjct: 161 DNIMILGDFNADGSYVSDKKMKQIRIRSDPEFHWLISDDEDTTASTHNDNTYDRIVIYGD 220
Query: 81 DNKNFLIDNSFSIVSYDQ--SDLDTRRSKLSTHCPLTIEY 118
D ++ S ++ S + K+S H P+ +E
Sbjct: 221 DMMQAVVPGSAKPFNFQTAFSLTEEDALKVSDHYPVEVEL 260
>gi|332187721|ref|ZP_08389456.1| exodeoxyribonuclease III family protein [Sphingomonas sp. S17]
gi|332012287|gb|EGI54357.1| exodeoxyribonuclease III family protein [Sphingomonas sp. S17]
Length = 260
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 35/135 (25%), Gaps = 21/135 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMD 47
++L + + K P ++ GDFN D
Sbjct: 126 DFLGRMIEWSGKLDCPTILTGDFNIAPLESDVWSHKQLLDVVSHTPIEVETLASLQASND 185
Query: 48 PDGLLIRFPQEKES-TCNVIKRNKSSL-DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
L F + R K D+ D + + + +
Sbjct: 186 WVDLGRHFIPAPQRLYTWWSYRAKDWAASDRGRRLDHMWATRDVAEKAIGHRVFEGCRSW 245
Query: 106 SKLSTHCPLTIEYDF 120
K S H P+ E+DF
Sbjct: 246 LKPSDHIPIMTEFDF 260
>gi|325189144|emb|CCA23669.1| conserved hypothetical protein [Albugo laibachii Nc14]
gi|325190842|emb|CCA25330.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 291
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/125 (8%), Positives = 22/125 (17%), Gaps = 6/125 (4%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L T GDFN + + P +
Sbjct: 165 QKAARLLWDRIKTIAGTDAIVFTLGDFNTYRHDPTYKFFTQDEAGPMFQDAWTNATSKVG 224
Query: 63 ----CNVIKRNKSSLDYFVID--RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + + ++ + S H P+
Sbjct: 225 DVSCTYHAWEGPAYHLENGVVGANHIDWLFSRPNLKVLETKVITEERNGFHPSDHYPMQT 284
Query: 117 EYDFE 121
E
Sbjct: 285 EILLP 289
>gi|297195088|ref|ZP_06912486.1| large secreted protein [Streptomyces pristinaespiralis ATCC 25486]
gi|197721523|gb|EDY65431.1| large secreted protein [Streptomyces pristinaespiralis ATCC 25486]
Length = 615
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 28/118 (23%), Gaps = 14/118 (11%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + + + + V+ GD N S + E+ S
Sbjct: 507 KQAQAVNAFVKDVLDADHKADVVVLGDINDFEFSETTKALTDGGALFPAIKSLPRSERYS 566
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEY 118
+ L S SYD + S H P + +
Sbjct: 567 YVY-----------QGNSQVLDQILTSPSIRDFSYDSVHINAEFSDQNSDHDPQVLRF 613
>gi|262037338|ref|ZP_06010804.1| endonuclease/exonuclease/phosphatase [Leptotrichia goodfellowii
F0264]
gi|261748641|gb|EEY36014.1| endonuclease/exonuclease/phosphatase [Leptotrichia goodfellowii
F0264]
Length = 249
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 23/120 (19%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L+K PF++AGDFN + ++ GL + +
Sbjct: 149 KQIVQLRKLIQ---DCRKPFIVAGDFNVLWGNEEIE----LFLEASGLHNVNVHREPTFP 201
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + ++ L + + LS H P+ I+++ +K
Sbjct: 202 SWAPK-----------KELDFILCSKEIKVKEFQVIKTL-----LSDHLPVIIDFEIKKD 245
>gi|158341378|ref|YP_001522543.1| hypothetical protein AM1_G0049 [Acaryochloris marina MBIC11017]
gi|158311619|gb|ABW33229.1| hypothetical protein AM1_G0049 [Acaryochloris marina MBIC11017]
Length = 401
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 13/127 (10%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKIN-SIGDTDDFWQKMDPDGLLIRFPQ---- 57
+Q + WA ++ +P V GD+N + S D + ++ + + Q
Sbjct: 162 QEQARKFRDWAGRQT---LPVVAVGDYNFDFDISAMDGNPAFEIFFEEPVFSWARQTCLS 218
Query: 58 ---EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ + LD+ + D K + + D D S H P+
Sbjct: 219 SNTCPSTGTQCNECFDGLLDFIFLSGDAKKWSNQSEILFKGSSFCDNDPTG--ASDHFPV 276
Query: 115 TIEYDFE 121
D +
Sbjct: 277 QAIIDLD 283
>gi|57101132|ref|XP_533780.1| PREDICTED: similar to Deoxyribonuclease gamma precursor (DNase
gamma) (Deoxyribonuclease I-like 3) (DNase I homolog
protein DHP2) (Liver and spleen DNase) (LS-DNase) (LSD)
[Canis familiaris]
Length = 304
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 45/124 (36%), Gaps = 6/124 (4%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D ++ F+ GDFN + + ++ D + ++E
Sbjct: 163 KEIDELVDVYLDVKRRWKAENFIFMGDFNAGCSYVPKKAWKIIRLRTDPGFVWLIGDQED 222
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYD 119
T + + + + ++ S S + ++ L T L S H P+ E+
Sbjct: 223 TTVKSSTHCAYDRIVLRGPEIIRSVVPRSNSTFDFQKAFLLTEEEALNVSDHFPV--EFK 280
Query: 120 FEKG 123
+
Sbjct: 281 LQSS 284
>gi|291401220|ref|XP_002716984.1| PREDICTED: CCR4 carbon catabolite repression 4-like [Oryctolagus
cuniculus]
Length = 426
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 297 CDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPPY 356
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEY 118
R + + + ++ +++ +Q + S S H L ++
Sbjct: 357 TTWKIRTSGECRHTLDYIWYSKHALSVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDF 416
Query: 119 DFEKGN 124
F + +
Sbjct: 417 SFNEES 422
>gi|88799867|ref|ZP_01115440.1| hypothetical protein MED297_03055 [Reinekea sp. MED297]
gi|88777447|gb|EAR08649.1| hypothetical protein MED297_03055 [Reinekea sp. MED297]
Length = 840
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 29/140 (20%), Gaps = 20/140 (14%)
Query: 3 SQQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + L + D V+ GD N + M + +
Sbjct: 661 ERAVQGLMAFLSNDPTNSGSNRLVVMGDMNAYSKETPIQMFESKGMVNLKATNKATEAHP 720
Query: 61 STCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQSDLDTRR------- 105
SLDY + + + YD
Sbjct: 721 -FSYSYGGFLGSLDYILGSNAMTSDLLSIDAWHINSLEANAFDYDTDLDPYDDNDTYASV 779
Query: 106 --SKLSTHCPLTIEYDFEKG 123
S H P+ + K
Sbjct: 780 DPYYSSDHDPIIASFLLTKT 799
>gi|256831937|ref|YP_003160664.1| 5'-Nucleotidase domain-containing protein [Jonesia denitrificans
DSM 20603]
gi|256685468|gb|ACV08361.1| 5'-Nucleotidase domain protein [Jonesia denitrificans DSM 20603]
Length = 1506
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 34/134 (25%), Gaps = 26/134 (19%)
Query: 5 QGEWLKKWA--------DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP 56
Q L +W + T +AGDFN D D
Sbjct: 512 QATALTQWVPTALDTIAKETGTTITDVALAGDFNAYTRE----DPMTVLSDAGYTNAAAT 567
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR------------ 104
+ + SLD+ + + + + ++ +S
Sbjct: 568 HAPDKASYSYQGLSGSLDHILYNDSFADRITGADIWNINAPESIALEYSRYNYHGTVFYE 627
Query: 105 --RSKLSTHCPLTI 116
+ S H P+ +
Sbjct: 628 NNAYRSSDHDPVIV 641
>gi|167463375|ref|ZP_02328464.1| hypothetical protein Plarl_12581 [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322382169|ref|ZP_08056092.1| hypothetical protein PL1_2483 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321153888|gb|EFX46246.1| hypothetical protein PL1_2483 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 247
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 32/116 (27%), Gaps = 19/116 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ I P ++ GDFN S K+ ++ C
Sbjct: 151 QADMI---LNKIIDDHHPMILLGDFNTWPQSK-LWRKVTAKLTDVS-----HSFRKKPCL 201
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ I + F I S + D S H PL F
Sbjct: 202 TFPSFRPR-------VRLDYIFISHHFHISSAEVITEDPA---ASDHLPLIATLKF 247
>gi|170650688|ref|NP_612535.1| nocturnin [Rattus norvegicus]
gi|149064849|gb|EDM15000.1| similar to Nocturnin (CCR4 protein homolog) [Rattus norvegicus]
Length = 428
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 37/125 (29%), Gaps = 7/125 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 299 CDLLQNLQNITEGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSPDGQSEPPY 358
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRR--SKLSTHCPLTIEY 118
R + + + ++ +++ +Q + S H L ++
Sbjct: 359 TTWKIRTSGECRHTLDYIWYSRHALSVTSALDLLTEEQIGPNRLPSFHYPSDHLSLVCDF 418
Query: 119 DFEKG 123
F +
Sbjct: 419 SFNEE 423
>gi|315613690|ref|ZP_07888597.1| exodeoxyribonuclease III [Streptococcus sanguinis ATCC 49296]
gi|315314381|gb|EFU62426.1| exodeoxyribonuclease III [Streptococcus sanguinis ATCC 49296]
Length = 296
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
++ Q + P + GD+N I + + + G
Sbjct: 171 AEYLAQ-LDKEKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDT 229
Query: 55 FPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +R+K+S +L N + +D+ +
Sbjct: 230 FRHIHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVAEKVTKSDMIDSGARQ--D 286
Query: 111 HCPLTIEYDF 120
H P+ +E +
Sbjct: 287 HTPIVLEIEL 296
>gi|297816036|ref|XP_002875901.1| hypothetical protein ARALYDRAFT_347932 [Arabidopsis lyrata subsp.
lyrata]
gi|297321739|gb|EFH52160.1| hypothetical protein ARALYDRAFT_347932 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/151 (9%), Positives = 35/151 (23%), Gaps = 40/151 (26%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------------- 43
+ + ++ ++ + P + GD N I + +
Sbjct: 523 KRIVEFLNK--TSDKPLIWCGDLNVSHEEIDVSHPEFFATAKLNGYVPPNKEDCGQPGFT 580
Query: 44 -----------QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
++ +E++ Y FL+
Sbjct: 581 PSERRRFGETMKEGMLVDAYRYLHKEQDMESGFSWSGNPIGKYRGKRMRIDYFLVSEQLK 640
Query: 93 IVSYDQS----DLDTRRSKLSTHCPLTIEYD 119
++ S HCP+T+E
Sbjct: 641 DRIVSCKMHGRGIELEGFYGSDHCPVTLELS 671
>gi|159896951|ref|YP_001543198.1| endonuclease/exonuclease/phosphatase [Herpetosiphon aurantiacus
ATCC 23779]
gi|159889990|gb|ABX03070.1| Endonuclease/exonuclease/phosphatase [Herpetosiphon aurantiacus
ATCC 23779]
Length = 1052
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 33/137 (24%), Gaps = 22/137 (16%)
Query: 3 SQQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ L W D ++I GD N T + E
Sbjct: 786 KTAAQELVAWLNTDPTNVDDSDYLIIGDLNSYAMEDPITAIRNAGYVNIPKTLL---GDE 842
Query: 61 STCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYD---------QSDLDT 103
+ + SLD+ + + + + Y+ S +
Sbjct: 843 AYSYIFDGQTGSLDHALASTSLFSQVADVQELHINADEPIALDYNTNFKSAGQIVSLYNN 902
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+ +
Sbjct: 903 DAYRASDHDPIVVGLAL 919
>gi|299743291|ref|XP_001835660.2| endonuclease/exonuclease/phosphatase [Coprinopsis cinerea
okayama7#130]
gi|298405590|gb|EAU86231.2| endonuclease/exonuclease/phosphatase [Coprinopsis cinerea
okayama7#130]
Length = 617
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 6/111 (5%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + V+AGDFN I++ Q + R PQE+
Sbjct: 503 QVSSVANFVKAVLDRDSNANIVVAGDFNEFIHTRSVYKPIVQHLTDIDEAARIPQEE-RY 561
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ +N LD+ ++ + ++ + + + ++S H P
Sbjct: 562 SYLFDQNAQQLDHALVSSSIRRRKVEFEHIHI---NTWAPSLSERISDHDP 609
>gi|126341987|ref|XP_001374214.1| PREDICTED: similar to DNL1L gene product [Monodelphis domestica]
Length = 644
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/117 (9%), Positives = 39/117 (33%), Gaps = 4/117 (3%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + +++ ++ GDFN + ++ ++
Sbjct: 516 RELDQLYRVVQDLKRLWDVQDVMLLGDFNAGCTFVPPEAWPGIRLWHHPDFHWLIGDQVD 575
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTI 116
T + + + V + ++ S ++ + + ++S H P+ +
Sbjct: 576 TTVSRRTHCAYDRIIVHGKALLQAVVPGSAKTFNFQKELGMSEEEALQVSDHYPVEV 632
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 31/101 (30%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN +S+ + + Q+ E T + + +
Sbjct: 216 QSEDVMLLGDFNADCSSLSKKRQGELVLRTKPGFLWVIQDGEDTTVRDSTHCTYDRIVIH 275
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + +T +S H P+ +E +
Sbjct: 276 GERCQGLVKWAAAFNFPRSFQLTETEALNISDHYPVEVELN 316
>gi|312194867|ref|YP_004014928.1| endonuclease/exonuclease/phosphatase [Frankia sp. EuI1c]
gi|311226203|gb|ADP79058.1| Endonuclease/exonuclease/phosphatase [Frankia sp. EuI1c]
Length = 357
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 31/120 (25%), Gaps = 14/120 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L + A + +P V+AGDFN + + + +
Sbjct: 251 KRWRAQLDQLAADVRSSPLPVVLAGDFNATRDHRPFRHLLDSGVRDAHDV--------TG 302
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L + L + + + + S H P+ +
Sbjct: 303 AGWQPTWPADLT-LPPVIRIDHVLASPA-----FAITGYHRGGNDGSDHLPVIANLALRR 356
>gi|265753182|ref|ZP_06088751.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|263236368|gb|EEZ21863.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 281
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 27/119 (22%), Gaps = 6/119 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L ++I P V+ GDFN S +
Sbjct: 168 RRQSALLIIRKIKEIVGERPAVVTGDFNVTDASDAYETITTNEFVMKDAYKTA----ARV 223
Query: 63 CNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V + + + + LS H P + +F
Sbjct: 224 TGVDYTFHDFARIPAEDCEKIDFIFVTPQVLVRNCEIPAEVPEAL-LSDHNPQLADLEF 281
>gi|167573681|ref|ZP_02366555.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
oklahomensis C6786]
Length = 614
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 33/135 (24%), Gaps = 24/135 (17%)
Query: 4 QQGEWLKKWADQKIKTGIP---FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + W + TG+P ++ GD N +
Sbjct: 457 RAASKVADWL-ARTPTGVPSEGVLLIGDLNSYTYEDPVRTLESRGYVNLVSSKI---GAG 512
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----------------DLDT 103
+ V LD+ + + + ++ D+
Sbjct: 513 AYSYVYNGEAGYLDHALASSALASRVKAVHDWHINADEPIALQYTLAYKTAEQQRTYYAP 572
Query: 104 RRSKLSTHCPLTIEY 118
+ S H P+ I+
Sbjct: 573 DAYRSSDHDPVLIDI 587
>gi|294674281|ref|YP_003574897.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
ruminicola 23]
gi|294473158|gb|ADE82547.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
ruminicola 23]
Length = 293
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 35/140 (25%), Gaps = 31/140 (22%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ + + + I G P V+ GDFN + + D + E+
Sbjct: 160 AKLVVQRIKE-IAKGKPVVLTGDFNVDQTNEIYGIFTQSGVLDDSFEKAQFRFAENGT-- 216
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD------------------------- 100
S + + +F++ Y
Sbjct: 217 ---FNSWDPELKTASRIDHVFVSPAFTVQRYGVLTNTYWSEAPQQTDTVKGADAPQEINF 273
Query: 101 LDTRRSKLSTHCPLTIEYDF 120
++ S H P+ + F
Sbjct: 274 QKHQKRLPSDHYPVFVRLTF 293
>gi|296120099|ref|ZP_06838653.1| putative exodeoxyribonuclease [Corynebacterium ammoniagenes DSM
20306]
gi|295967253|gb|EFG80524.1| putative exodeoxyribonuclease [Corynebacterium ammoniagenes DSM
20306]
Length = 302
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/96 (12%), Positives = 25/96 (26%), Gaps = 2/96 (2%)
Query: 26 AGDF--NRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
GD+ + + D P+ + R ++ + D +
Sbjct: 207 LGDWLGIVDYETKTNWQPTEDPKWFDVARRLEPEAEGPYTWWTYRGQAFNNDAGWRIDYQ 266
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S H PL +EY+
Sbjct: 267 AATDSMLQRAQRSWVEKAPSVEERWSDHSPLMVEYN 302
>gi|262376870|ref|ZP_06070097.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
gi|262308215|gb|EEY89351.1| conserved hypothetical protein [Acinetobacter lwoffii SH145]
Length = 812
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/145 (11%), Positives = 37/145 (25%), Gaps = 27/145 (18%)
Query: 6 GEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ L +W + +++ GD N + Q K +
Sbjct: 631 VQELMQWIAKNPTQVAKPNYLLVGDMNSYAKEDPILALEKANYKVLLNDEKIGQGKTAYS 690
Query: 64 NVIK--------RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD--------------- 100
V +LD+ + D D + ++ D+
Sbjct: 691 YVFGVASDANGNGGAGNLDHAIADADLYPMVKRAFAWHINADEPTALDYNEEYKTDEQIA 750
Query: 101 --LDTRRSKLSTHCPLTIEYDFEKG 123
+ S H P+ ++ D +
Sbjct: 751 AFYSDDAFRSSDHDPVIVDMDLNEN 775
>gi|225548210|ref|ZP_03769495.1| hypothetical protein RUMHYD_00189 [Blautia hydrogenotrophica DSM
10507]
gi|225040649|gb|EEG50895.1| hypothetical protein RUMHYD_00189 [Blautia hydrogenotrophica DSM
10507]
Length = 368
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 15/131 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFN-RKINSIGDT-------DDFWQKMDPDGLL 52
+ +Q + L ++ + + G + GDFN S + +Q D D
Sbjct: 240 IRQKQLKRLNEFLKSEAEEGNYVIAGGDFNHDIAGSKDLYESGQEIPEWIYQLSDSDLAE 299
Query: 53 IRFPQEKESTCNVIKRNKS---SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
E+ V + FL+ ++ S S S
Sbjct: 300 GYSFVIPENLGEVASCRGADIPYQKNVTYTAVVDGFLVSDNVKATSTVISTGFAY----S 355
Query: 110 THCPLTIEYDF 120
H P+ + +
Sbjct: 356 DHQPVKLTFSL 366
>gi|319795420|ref|YP_004157060.1| endonuclease/exonuclease/phosphatase [Variovorax paradoxus EPS]
gi|315597883|gb|ADU38949.1| Endonuclease/exonuclease/phosphatase [Variovorax paradoxus EPS]
Length = 274
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 16/118 (13%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L+++ D+++ V+AGDFN + M +
Sbjct: 172 RQIARLREFIDREVPAHEAVVVAGDFNDWGARMRY---AMNAMGLRDASDLRGPRTLTYP 228
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ +F+ +S +++S H PL ++
Sbjct: 229 ------------SRLPVAQLDFVYGRKLEPLSCTVPRGPI-WARMSDHLPLVADFSLP 273
>gi|307700018|ref|ZP_07637067.1| putative exodeoxyribonuclease III [Mobiluncus mulieris FB024-16]
gi|307614779|gb|EFN93999.1| putative exodeoxyribonuclease III [Mobiluncus mulieris FB024-16]
Length = 289
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 30/126 (23%), Gaps = 32/126 (25%)
Query: 24 VIAGDFNRKINSIGDTDD----------------------------FWQKMDPDGLLIRF 55
++ GDFN + + D
Sbjct: 165 LVCGDFNIVRTERDIKNWKPNHNKVSGVMDEEIAILDAWMSDSLEGTAKHPAVDVTRALL 224
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCP 113
+ + +R K+ + + + + + S + + S H P
Sbjct: 225 GEVQGPYTWWSQRGKAFDNDAGW--RIDYQMATPGLATHAAEVSVWRAPSYAERWSDHAP 282
Query: 114 LTIEYD 119
L+I Y
Sbjct: 283 LSITYQ 288
>gi|229011485|ref|ZP_04168673.1| hypothetical protein bmyco0001_19350 [Bacillus mycoides DSM 2048]
gi|228749776|gb|EEL99613.1| hypothetical protein bmyco0001_19350 [Bacillus mycoides DSM 2048]
Length = 219
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 39/131 (29%), Gaps = 11/131 (8%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +Q + + W + ++ GDFN + +S + L
Sbjct: 91 VRKEQLDTVNNWIKNRGSGYE--LLCGDFNDEPHSGVHQYLISNQWIDVAQLKENQDNIL 148
Query: 61 STCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS--------KLSTH 111
+ + N + + + LI S S + ++ S H
Sbjct: 149 AQPTLDYGKNTNLIGDEKQEERYDWILIQEKDSFESLNIENVSVFGDLALTSSHVFPSDH 208
Query: 112 CPLTIEYDFEK 122
+ I+ F+K
Sbjct: 209 YGVFIDLKFDK 219
>gi|220907814|ref|YP_002483125.1| Endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 7425]
gi|219864425|gb|ACL44764.1| Endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 7425]
Length = 647
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 10/121 (8%)
Query: 3 SQQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
Q + ++ + ++ GD N S Q L + E E
Sbjct: 535 QTQAAIVHQFVQTLLSQNPATKVIVLGDLNDFGFSPPLETLKGQPPLLVNLAEQL-PEVE 593
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V + N LD+ ++ + + + ++LS H P
Sbjct: 594 RYSYVFQGNAQELDHVLVSSALQPRAQFDIVHL-------NAEFHTQLSDHDPCVARLLL 646
Query: 121 E 121
Sbjct: 647 P 647
>gi|158312926|ref|YP_001505434.1| endonuclease/exonuclease/phosphatase [Frankia sp. EAN1pec]
gi|158108331|gb|ABW10528.1| Endonuclease/exonuclease/phosphatase [Frankia sp. EAN1pec]
Length = 314
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 13/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L + + +P V+AGDFN + + ++
Sbjct: 209 KRWRAQLDHLREDVETSKLPVVLAGDFNATRDHRPLRRLLSAGVRDAHDVL--------G 260
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ F + L +F++ Y S H P+T +
Sbjct: 261 AGWTPTWNAKTVAFPPVLRIDHVLASPAFAVTGYQVGSEFD-----SDHKPVTADLAL 313
>gi|156398432|ref|XP_001638192.1| predicted protein [Nematostella vectensis]
gi|156225311|gb|EDO46129.1| predicted protein [Nematostella vectensis]
Length = 506
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/146 (10%), Positives = 33/146 (22%), Gaps = 37/146 (25%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------WQKMDPD-------- 49
L K + +G ++ GD N I + + +
Sbjct: 159 RLLSKRVKALLNSGKHVIVLGDINAAHKPIDHCNPCKYEDFSSFPGRAWLDELLVSLPLP 218
Query: 50 ----------------GLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
F ++E+ N + + L+D
Sbjct: 219 DNSCDSSWKCVSGLLIDSFRYFHPLQREAYTNWSTSTGARQTNYG--TRIDYILVDPPLL 276
Query: 93 IVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + S HCP+
Sbjct: 277 QQEF-VDCVIRPEVEGSDHCPVVCTL 301
>gi|88705337|ref|ZP_01103048.1| protein containing Endonuclease/exonuclease/phos phatase domain
[Congregibacter litoralis KT71]
gi|88700427|gb|EAQ97535.1| protein containing Endonuclease/exonuclease/phos phatase domain
[Congregibacter litoralis KT71]
Length = 1037
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 30/124 (24%), Gaps = 18/124 (14%)
Query: 12 WAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
W D +I GD N T + V
Sbjct: 864 WLDSDPTGSGDDDMLILGDLNSYAKEDPITLLVNAGYTDLAAYFL---GDSAYGYVFSGR 920
Query: 70 KSSLDYFVIDRDNK--------NFLIDNSFSIVSYD-----QSDLDTRRSKLSTHCPLTI 116
+LDY + + + + + YD Q+ + S H P+ +
Sbjct: 921 WGTLDYAMANPALLAQVAGVTEWHINADEPDAIDYDTRFNPQAWFAGDAFRSSDHDPVLV 980
Query: 117 EYDF 120
+
Sbjct: 981 GLNL 984
>gi|119716549|ref|YP_923514.1| endonuclease/exonuclease/phosphatase [Nocardioides sp. JS614]
gi|119537210|gb|ABL81827.1| Endonuclease/exonuclease/phosphatase [Nocardioides sp. JS614]
Length = 929
Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 31/133 (23%), Gaps = 20/133 (15%)
Query: 5 QGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q E L +A Q + GDFN D + + E T
Sbjct: 699 QAEALSDFAIQVAAGLDTDAVFLTGDFNSYTQE----DPLQVLYGAGYDNLESTTDPEET 754
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--------------QSDLDTRRSKL 108
SLD+ + + ++ D +
Sbjct: 755 TYSFDGLAGSLDHVLASPAAAAMVTGVDIWNINADESIAFEYSRYNYNATDFYAPGPYRA 814
Query: 109 STHCPLTIEYDFE 121
S H P + D
Sbjct: 815 SDHDPEVVGIDLP 827
>gi|307709700|ref|ZP_07646152.1| exodeoxyribonuclease III [Streptococcus mitis SK564]
gi|307619598|gb|EFN98722.1| exodeoxyribonuclease III [Streptococcus mitis SK564]
Length = 275
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
++ + + P + GD+N N I + + + G
Sbjct: 150 AEYLAE-LDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDT 208
Query: 55 FPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +R+K+S +L N + +D+ +
Sbjct: 209 FRHIHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVTKSDMIDSGARQ--D 265
Query: 111 HCPLTIEYDF 120
H P+ +E +
Sbjct: 266 HTPIVLEIEL 275
>gi|190894773|ref|YP_001985066.1| putative metal-dependent hydrolase [Rhizobium etli CIAT 652]
gi|190700434|gb|ACE94516.1| putative metal-dependent hydrolase protein [Rhizobium etli CIAT
652]
Length = 242
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 16/119 (13%)
Query: 4 QQGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W ++ +P V+ GDFN +S D P+
Sbjct: 137 RQMTTLLNSGWLRGAMEEPLPCVLCGDFNALPSSATYRLVARSLKDAQLGGKASPRATFP 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + + + S H PL E F
Sbjct: 197 SRYP-------------LMRLDHIFVTDDLVVKRAAVL-QNRLTNVASDHLPLFAEISF 241
>gi|237654298|ref|YP_002890612.1| endonuclease/exonuclease/phosphatase [Thauera sp. MZ1T]
gi|237625545|gb|ACR02235.1| Endonuclease/exonuclease/phosphatase [Thauera sp. MZ1T]
Length = 249
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 36/117 (30%), Gaps = 14/117 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L + ++ P +IAGDFN W+ D L R +
Sbjct: 144 RRQMEALAERMEELAPGNAPLIIAGDFND-----------WRNRADDLLGRRLGLAEAFG 192
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R S + + V Q +++S H LT + +
Sbjct: 193 SG-RGRPARSYPSTLPFFRLDRIYVRGF--RVRQAQVHYGAPWARISDHAALTADLE 246
>gi|302865833|ref|YP_003834470.1| endonuclease/exonuclease/phosphatase [Micromonospora aurantiaca
ATCC 27029]
gi|302568692|gb|ADL44894.1| Endonuclease/exonuclease/phosphatase [Micromonospora aurantiaca
ATCC 27029]
Length = 675
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 20/118 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + +A + G P V+ GD N + + D + + GL+ +
Sbjct: 578 EQAGEVAAFAG-RYANGRPLVLGGDLNTEPD-----DPAFAEFTRSGLVDALAAARPLRT 631
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ ++ +D+ + + R++ S H P+T+
Sbjct: 632 SPADDPRTQIDHVFVSPGLTATEV--------------RAPRTEASDHLPVTLTVTLP 675
>gi|86604847|ref|YP_473610.1| endonuclease/exonuclease/phosphatase family protein [Synechococcus
sp. JA-3-3Ab]
gi|86553389|gb|ABC98347.1| endonuclease/exonuclease/phosphatase family protein [Synechococcus
sp. JA-3-3Ab]
Length = 635
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 38/137 (27%), Gaps = 26/137 (18%)
Query: 3 SQQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + + W + T +I GD N + ++ G
Sbjct: 298 RRAAQEILNWLSTNPTGSTDPDVLIIGDLNAYAKEDPI-----KVLEEGGFTNL--NGPN 350
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-----------------LDT 103
S + SLD+ + + + + ++ ++ D+
Sbjct: 351 SYSFSFQGQWGSLDHALANASLRPQVTGSAKWHINADEPVSLDYTTSFKSASQQSLFYAP 410
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H P+ + +
Sbjct: 411 DPFRSSDHDPVIVGLNL 427
>gi|302792621|ref|XP_002978076.1| hypothetical protein SELMODRAFT_418021 [Selaginella moellendorffii]
gi|300154097|gb|EFJ20733.1| hypothetical protein SELMODRAFT_418021 [Selaginella moellendorffii]
Length = 355
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 33/132 (25%), Gaps = 25/132 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------------- 49
Q+ + ++AGDFN + +
Sbjct: 226 ISQEFNSNPVVLVAGDFNSTPGDRVYNYITSGRRNSGPDVELSSFKVPDLESLKVPAIPL 285
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
L Q + + N K +LDY + + V D + S
Sbjct: 286 DSLYAAVQGEPALTNWSPNFKGTLDYIFFSPSAS--MRPKTILEVPPDVEEGLPNHFHPS 343
Query: 110 THCPLTIEYDFE 121
H P+ ++
Sbjct: 344 DHLPIGADFSLS 355
>gi|294789096|ref|ZP_06754335.1| endonuclease/exonuclease/phosphatase family protein [Simonsiella
muelleri ATCC 29453]
gi|294482837|gb|EFG30525.1| endonuclease/exonuclease/phosphatase family protein [Simonsiella
muelleri ATCC 29453]
Length = 238
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 24/115 (20%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + ++ + + +K + GDFN N+ +
Sbjct: 148 QLKQIR-FIRETLKPYDNVCLMGDFNCPSNAEQLHLLK--------DFDYIHLNDNTATY 198
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
K +LD+ I K F S H P+ +E +
Sbjct: 199 PSWHPKQTLDHIFIKGCLKGRAEVAQFC---------------ASDHLPVILEIE 238
>gi|227889347|ref|ZP_04007152.1| exodeoxyribonuclease III [Lactobacillus johnsonii ATCC 33200]
gi|227850149|gb|EEJ60235.1| exodeoxyribonuclease III [Lactobacillus johnsonii ATCC 33200]
Length = 179
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 34/133 (25%), Gaps = 24/133 (18%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKIN-------SIGDTDDFWQKMDPD--------- 49
+ + + + + P +I GD + + ++
Sbjct: 48 AQTFRNYVTKLM-QYKPVIIGGDMSVAHERIDLAEPDDNHHRPGFTGIERKEVFELLNAG 106
Query: 50 --GLLIRFPQEKESTCNVIKRNK-SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
F ++ R+K + + D + + +
Sbjct: 107 FIDTFRYFHPDEAKYTYWSYRDKEARAENLGWRLDYFLVSNNLEDKLTNAKILSNIMG-- 164
Query: 107 KLSTHCPLTIEYD 119
S HCP+ ++ D
Sbjct: 165 --SDHCPIELDVD 175
>gi|218460813|ref|ZP_03500904.1| putative metal-dependent hydrolase protein [Rhizobium etli Kim 5]
Length = 242
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 29/119 (24%), Gaps = 16/119 (13%)
Query: 4 QQGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W +P ++ GDFN +S D P+
Sbjct: 137 RQMTTLLNSGWLRGTKDEPLPCILCGDFNAIPSSATYRLATRSLKDALLGGKAAPRATFP 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + + S H PL E F
Sbjct: 197 SRYP-------------LMRLDHIFVTDDLVVQRATVL-QNRLTRVASDHLPLFAEISF 241
>gi|238020559|ref|ZP_04600985.1| hypothetical protein GCWU000324_00445 [Kingella oralis ATCC 51147]
gi|237867539|gb|EEP68545.1| hypothetical protein GCWU000324_00445 [Kingella oralis ATCC 51147]
Length = 240
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 24/115 (20%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q ++ + QK+ + GDFN + +++ +S
Sbjct: 149 QFRQIR-FVRQKLAAFENVCLMGDFNCPPD--------AEQLCLLTDHDYARLTLDSPTY 199
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ K SLD+ + K + F+ S H P+ +E D
Sbjct: 200 PSWKPKQSLDHIFVKGSLKGACHVSQFA---------------ASDHLPVVLEVD 239
>gi|220917946|ref|YP_002493250.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955800|gb|ACL66184.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter dehalogenans
2CP-1]
Length = 296
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 10/116 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q L++ AD ++ G V GD N + S + G +
Sbjct: 188 AEQAARLREVADGLLRAGARVVAGGDLNDEAGSTA----LAPLLGDGGWIDPAAALPPEA 243
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ D+ ++ S+V + ++ S H P+ ++
Sbjct: 244 RWTWSGGAARA-----ALDHLAIPRADAGSVVQAAIAGGPDVQA-ASDHRPVVLDL 293
>gi|197123156|ref|YP_002135107.1| endonuclease/exonuclease/phosphatase [Anaeromyxobacter sp. K]
gi|196173005|gb|ACG73978.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter sp. K]
Length = 296
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 37/116 (31%), Gaps = 10/116 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q L++ AD ++ G V GD N + S + G +
Sbjct: 188 AEQAARLREVADGLLRAGAQVVAGGDLNDEAGSTA----LAPLLGDGGWIDPAAALPPEA 243
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ D+ ++ S+V + ++ S H P+ ++
Sbjct: 244 RWTWSGGGARA-----ALDHLAVPRADAGSVVQAAIAGGPDVQA-ASDHRPVVLDL 293
>gi|308806584|ref|XP_003080603.1| Endonuclease/exonuclease/phosphatase (ISS) [Ostreococcus tauri]
gi|116059064|emb|CAL54771.1| Endonuclease/exonuclease/phosphatase (ISS) [Ostreococcus tauri]
Length = 546
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 23/126 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKIN---SIGDTDD------FWQKMDPDGLLIRF 55
Q E L+ A ++ + G ++AGD N + G+ + ++ DG+
Sbjct: 207 QAEVLRSIARERFEAGDAVIVAGDLNDYSDLHVDAGNNSPTSRVLRMLRDLNNDGVDELQ 266
Query: 56 PQEK-----ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + +K+ LDY + + L+ S + S +S
Sbjct: 267 EVGELVAVSDRYTWRSGSSKAKLDYIL-VSRSDFDLVSASIQHDLVNAS--------VSD 317
Query: 111 HCPLTI 116
H PL
Sbjct: 318 HFPLLA 323
>gi|326918342|ref|XP_003205448.1| PREDICTED: nocturnin-like [Meleagris gallopavo]
Length = 379
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 39/125 (31%), Gaps = 7/125 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ IP +I GDFN + + ++ + + +
Sbjct: 250 CDLLQNLKSITQGAKIPLIICGDFNAEPTEEVYREFSNSSLNLNSAYKLLSPDGQSEPPY 309
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEY 118
R + + ++++ +++ +Q + S S H L ++
Sbjct: 310 TTWKIRPSGECRHTLDYIWYSQHALNVNSALGLLTEEQIGPNRLPSFNYPSDHLSLVCDF 369
Query: 119 DFEKG 123
F +
Sbjct: 370 SFNQD 374
>gi|297205315|ref|ZP_06922711.1| exodeoxyribonuclease III [Lactobacillus jensenii JV-V16]
gi|297149893|gb|EFH30190.1| exodeoxyribonuclease III [Lactobacillus jensenii JV-V16]
Length = 299
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 19/136 (13%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----FWQKMDPDGLLIRFP 56
+QG W KK+ + QK+ P + +GD+N I +
Sbjct: 165 DRQG-WDKKYIEYLQKLDKEKPVLASGDYNVAHEEIDLKHPENNHHSAGFTDEERADFTE 223
Query: 57 QEKESTCNVIKRNKSSLD--YFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLS---- 109
+ ++ ++ Y + K +NS + Y S+ + K S
Sbjct: 224 LLSTGFTDSFRKIHGNIPEVYSWWAQRIKTAKANNSGWRIDYWLTSNRIADKIKKSEMMD 283
Query: 110 -----THCPLTIEYDF 120
HCP+ +E D
Sbjct: 284 TGERADHCPIVLEIDL 299
>gi|218437404|ref|YP_002375733.1| endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 7424]
gi|218170132|gb|ACK68865.1| Endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 7424]
Length = 1073
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 13/119 (10%)
Query: 4 QQGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + + + + ++ GD N L E E
Sbjct: 817 EQAQVVNNFVSNILGSNPDANAIVLGDLN----EFQFFSPLEILQQTLNNLTFSLPENER 872
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + N LD+ ++ + N + I S + S H PL ++
Sbjct: 873 YSYIFEGNSQQLDHILVSDNLLNSAEFDIVHINSQFAD-------QTSDHDPLLARFNL 924
>gi|32475353|ref|NP_868347.1| hypothetical protein RB8407 [Rhodopirellula baltica SH 1]
gi|32445894|emb|CAD78625.1| probable secreted protein [Rhodopirellula baltica SH 1]
Length = 281
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 39/121 (32%), Gaps = 22/121 (18%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +Q L + P +IAGDFN K S+ + +
Sbjct: 175 LREKQATELNRLLAC---GSTPVIIAGDFNAKPASLAMQTLQAKW-------------RI 218
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+T + + +D NS+ IV + D S H PL +E +
Sbjct: 219 ATTESMHTFPARSPNRQLDYVA--MYPANSWRIVESEVLDEPV----ASDHRPLLVEIEL 272
Query: 121 E 121
E
Sbjct: 273 E 273
>gi|311747824|ref|ZP_07721609.1| putative endonuclease/exonuclease/phosphatase family protein
[Algoriphagus sp. PR1]
gi|126575815|gb|EAZ80125.1| putative endonuclease/exonuclease/phosphatase family protein
[Algoriphagus sp. PR1]
Length = 278
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 20/105 (19%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
++ +P + AGD N + +S D S D
Sbjct: 193 QSNLPVIWAGDLNLRPDSEAYRSIIGTWKDAGSD----------PTPYSPTFGSLKDG-- 240
Query: 78 IDRDNKNFLIDNS-FSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
D S F++ SY D+ S H P+ + F+
Sbjct: 241 --PRIDYVWFDPSKFTLESYQVLDVPF-----SDHYPVLVTLKFK 278
>gi|152965406|ref|YP_001361190.1| endonuclease/exonuclease/phosphatase [Kineococcus radiotolerans
SRS30216]
gi|151359923|gb|ABS02926.1| Endonuclease/exonuclease/phosphatase [Kineococcus radiotolerans
SRS30216]
Length = 291
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 26/131 (19%), Gaps = 16/131 (12%)
Query: 4 QQGEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ-------KMDPDGLLIR 54
+Q L + + P V+ GDFN S +
Sbjct: 161 EQVRALVPFVVGGHRRGEHYPPVLTGDFNAVAESDELRLAGGYLTPGPVPGVVLVDSWRF 220
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNF------LIDNSFSIVSYDQSDLDTRRSKL 108
+ +RN + +
Sbjct: 221 AAPDDPGFT-WDRRNPFVARVHQPSARIDHVLVGLPPFTGEGSVRDVRLVATEPVGGVWA 279
Query: 109 STHCPLTIEYD 119
S H + ++ +
Sbjct: 280 SDHAAVVVDLE 290
>gi|83645744|ref|YP_434179.1| beta-glucanase/beta-glucan synthetase [Hahella chejuensis KCTC 2396]
gi|83633787|gb|ABC29754.1| Beta-glucanase/Beta-glucan synthetase [Hahella chejuensis KCTC 2396]
Length = 1140
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 23/118 (19%), Gaps = 17/118 (14%)
Query: 5 QGEWLKKWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L+ + G P V+ GD N S Q
Sbjct: 1039 SANILRDRLGEVNQNWGTPTVLLGDLNAIPGSGPVNTLVNQTPLNS-------------- 1084
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + + S H P+ E +
Sbjct: 1085 -FFSGGTFNNWNVQAGDQLDHV-VGSRVNAAGCALETYREGDYPPSDHYPIACELRLQ 1140
>gi|16329547|ref|NP_440275.1| extracellular nuclease [Synechocystis sp. PCC 6803]
gi|1652030|dbj|BAA16955.1| extracellular nuclease [Synechocystis sp. PCC 6803]
Length = 1879
Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 35/134 (26%), Gaps = 20/134 (14%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L W + +++ GD+N G +
Sbjct: 1525 KAAQELVTWLNTNPTGVNDSDYLLLGDYNAYAQEDPIKALESAGYVNLG---AQFSGGTN 1581
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------------S 106
T V +LDY + + ++ D++D
Sbjct: 1582 TSYVFDGQTGTLDYAFASASLAAQVTGATEWGINADEADALDYNLDFGRDVNIFDGTVPY 1641
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+ + +
Sbjct: 1642 RSSDHDPIIVGLNL 1655
>gi|289167379|ref|YP_003445648.1| exodeoxyribonuclease III [Streptococcus mitis B6]
gi|288906946|emb|CBJ21780.1| exodeoxyribonuclease III [Streptococcus mitis B6]
Length = 275
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
++ + + P + GD+N N I + + + G
Sbjct: 150 AEYLAE-LDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDT 208
Query: 55 FPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +R+K+S +L N + +D+ +
Sbjct: 209 FRHIHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--D 265
Query: 111 HCPLTIEYDF 120
H P+ +E +
Sbjct: 266 HTPIVMEIEL 275
>gi|293365984|ref|ZP_06612686.1| exodeoxyribonuclease [Streptococcus oralis ATCC 35037]
gi|291315527|gb|EFE55978.1| exodeoxyribonuclease [Streptococcus oralis ATCC 35037]
Length = 275
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
++ Q + P + GD+N I + + + G
Sbjct: 150 AEYLAQ-LDKEKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDT 208
Query: 55 FPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +R+K+S +L N + +D+ +
Sbjct: 209 FRHLHGDVPECYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--D 265
Query: 111 HCPLTIEYDF 120
H P+ +E +
Sbjct: 266 HTPIVLEIEL 275
>gi|309812434|ref|ZP_07706189.1| endonuclease/exonuclease/phosphatase family protein [Dermacoccus
sp. Ellin185]
gi|308433739|gb|EFP57616.1| endonuclease/exonuclease/phosphatase family protein [Dermacoccus
sp. Ellin185]
Length = 800
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q ++ + D+ + V GD N S + L R E
Sbjct: 679 QATVVRGFIDKLLAADPNARIVTLGDLNDFEFSRTTDILVGNRKTAMTDLPRTLPANERY 738
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIE 117
V + N LD+ ++ + + + +YD + S H P +
Sbjct: 739 SYVYEGNSQILDHILLSPKLAQPWLGLAKPLFNYDIVHTNSEFPDQDSDHDPQIVR 794
>gi|300309579|ref|YP_003773671.1| metal-dependent hydrolase [Herbaspirillum seropedicae SmR1]
gi|300072364|gb|ADJ61763.1| metal-dependent hydrolase protein [Herbaspirillum seropedicae SmR1]
Length = 265
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 11/126 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---- 58
+Q + L + P +IAGDFN N + +Q + + +
Sbjct: 142 RRQIDALIQAVSTSSPPDAPLLIAGDFNDWTN--QLSRTLYQNLGVTEVFDQPQPNARGV 199
Query: 59 ----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ + ++ + + F + + + ++LS H P+
Sbjct: 200 MQGLRRLGGLSAPIRPARTFPAMMPWLRLDRIYVRGFRVETAEVLKDGP-WARLSDHAPI 258
Query: 115 TIEYDF 120
E
Sbjct: 259 VTELHL 264
>gi|254491940|ref|ZP_05105119.1| endonuclease/exonuclease/phosphatase family [Methylophaga
thiooxidans DMS010]
gi|224463418|gb|EEF79688.1| endonuclease/exonuclease/phosphatase family [Methylophaga
thiooxydans DMS010]
Length = 250
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 14/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L + D + P ++AGDFN Q ++ + +
Sbjct: 147 RRQFVTLCERIDAHVPHDAPLIVAGDFNDWAGQAEKR--LSQHLNLKEAFRTLH-NRYAR 203
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ ++ + ++LS H PL ++
Sbjct: 204 TWPSWM------PVLKMDRIYYRGMEPIICERP-----PHSTWNRLSDHAPLLASFEL 250
>gi|332525591|ref|ZP_08401746.1| hypothetical protein RBXJA2T_07110 [Rubrivivax benzoatilyticus JA2]
gi|332109156|gb|EGJ10079.1| hypothetical protein RBXJA2T_07110 [Rubrivivax benzoatilyticus JA2]
Length = 269
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L ++ D + G ++AGDFN W + + Q +
Sbjct: 166 RQVARLAEFIDATVPPGEMLIVAGDFND-----------WGERLDSPMATIGLQRAFAPE 214
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ R + + + VS +++S H PL E +
Sbjct: 215 ST--RQQRLTFPSLAPVFALDRFYLRGLRCVSTMVPRGMA-WARMSDHLPLVAELE 267
>gi|148703245|gb|EDL35192.1| CCR4 carbon catabolite repression 4-like (S. cerevisiae), isoform
CRA_a [Mus musculus]
Length = 609
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 37/125 (29%), Gaps = 7/125 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 480 CDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSPDGQSEPPY 539
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRR--SKLSTHCPLTIEY 118
R + + + ++ +++ +Q + S H L ++
Sbjct: 540 TTWKIRTSGECRHTLDYIWYSRHALSVTSALDLLTEEQIGPNRLPSFHYPSDHLSLVCDF 599
Query: 119 DFEKG 123
F +
Sbjct: 600 SFNEE 604
>gi|307710716|ref|ZP_07647145.1| exodeoxyribonuclease III [Streptococcus mitis SK321]
gi|307617487|gb|EFN96658.1| exodeoxyribonuclease III [Streptococcus mitis SK321]
Length = 275
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
++ + + P + GD+N N I + + + G
Sbjct: 150 AEYLAE-LDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDT 208
Query: 55 FPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +R+K+S +L N + +D+ +
Sbjct: 209 FRHIHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADNVTKSDMIDSGARQ--D 265
Query: 111 HCPLTIEYDF 120
H P+ +E +
Sbjct: 266 HTPIVMEIEL 275
>gi|194208445|ref|XP_001501284.2| PREDICTED: similar to CCR4 carbon catabolite repression 4-like
[Equus caballus]
Length = 450
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 38/125 (30%), Gaps = 7/125 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 321 CDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPPY 380
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEY 118
R + + + ++ +++ +Q + S S H L ++
Sbjct: 381 TTWKIRTSGECRHTLDYIWYSKHALSVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDF 440
Query: 119 DFEKG 123
F +
Sbjct: 441 SFNEE 445
>gi|322388347|ref|ZP_08061951.1| exodeoxyribonuclease [Streptococcus infantis ATCC 700779]
gi|321141019|gb|EFX36520.1| exodeoxyribonuclease [Streptococcus infantis ATCC 700779]
Length = 340
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
++ Q + P + GD+N I + + + G
Sbjct: 215 AEYLAQ-LDKQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEEREGFTNLLAKGFTDT 273
Query: 55 FPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +R+K+S +L N + +D+ +
Sbjct: 274 FRHIHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVSKSDMIDSGARQ--D 330
Query: 111 HCPLTIEYDF 120
H P+ +E DF
Sbjct: 331 HTPIVMEIDF 340
>gi|311696709|gb|ADP99582.1| extracellular nuclease [marine bacterium HP15]
Length = 586
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 14/130 (10%)
Query: 5 QGEWLKKWADQKIKTGIPF--VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--E 60
+ + L W+ + +I GD N EK
Sbjct: 457 EAKTLAAWSGSDTRRHYSVGTLIIGDLNSYAREHPIAVLEQAGFTSMVHHFYPCTEKTCG 516
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR----------SKLST 110
+ K SLD+ + K ++ +V+ D+ + R + S
Sbjct: 517 HYTYRYRGQKGSLDFALASETLKPRVMGAWSWLVNADEPRVLDYRSDHPASGRGPWRSSD 576
Query: 111 HCPLTIEYDF 120
H P+ ++
Sbjct: 577 HNPVIVDLKL 586
>gi|184199933|ref|YP_001854140.1| hypothetical protein KRH_02870 [Kocuria rhizophila DC2201]
gi|183580163|dbj|BAG28634.1| hypothetical protein [Kocuria rhizophila DC2201]
Length = 636
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 28/131 (21%), Gaps = 23/131 (17%)
Query: 5 QGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q E L W + + GDFN +
Sbjct: 510 QAEALVDWIPELADRAGSADVALLGDFNSYTQEDPMQVFYSAGFASAPAADEH------- 562
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--------------SDLDTRRSKL 108
V SLD+ ++ R + ++ Q +
Sbjct: 563 TYVHGGQVGSLDHLLVSRSLQQRTTGADVWNINSGQSPLLQYAQYRTTALDYYRPDAAAS 622
Query: 109 STHCPLTIEYD 119
S H P +
Sbjct: 623 SDHDPAIAGFR 633
>gi|171913306|ref|ZP_02928776.1| hypothetical protein VspiD_19040 [Verrucomicrobium spinosum DSM
4136]
Length = 299
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 32/129 (24%), Gaps = 29/129 (22%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I G P V+ GDFN S + DG + +
Sbjct: 176 REIAGGRPTVLTGDFNVDQTSESYRRIHDSQFLADGFETAEERYALNGT-----ANGFKV 230
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR------------------------SKLST 110
DR + F ++ Y R S
Sbjct: 231 TAYTDRRIDHIFHTRGFKVLRYGVLTDSYRSPSGDAAETGSVAFPREMKFRNYLPRTPSD 290
Query: 111 HCPLTIEYD 119
H P+ +E +
Sbjct: 291 HFPVLVELE 299
>gi|298373415|ref|ZP_06983404.1| extracellular ribonuclease/nuclease fusion protein [Bacteroidetes
oral taxon 274 str. F0058]
gi|298274467|gb|EFI16019.1| extracellular ribonuclease/nuclease fusion protein [Bacteroidetes
oral taxon 274 str. F0058]
Length = 554
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 12/113 (10%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
+I GD N D + + + + + + V LD+ V +
Sbjct: 365 DEDVLIMGDLNSYAKE----DPLYVFYNKGYVNLLKSKNDSAYSYVYSGLSGCLDHAVAN 420
Query: 80 RDNK--------NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ + + + Y QS + S H + + D N
Sbjct: 421 ASMRRQIVDARVFHINADEPKMFEYHQSTSVGDMYRSSDHDAVVVALDLGGTN 473
>gi|256843562|ref|ZP_05549050.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256614982|gb|EEU20183.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
Length = 255
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 16/133 (12%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKI-----------NSIGDT-DDFWQKMDP 48
M Q + + +++ + G ++ GDFN + I QKM P
Sbjct: 127 MRKAQMKLISSVMEKEYRRGNYVIVGGDFNHALGKDMMTHFEHQEEIPSWVSVLDQKMLP 186
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ Q +E+ V + F++ + +Y+ +
Sbjct: 187 KDFTMIKAQNRENVATVRATDMKYDPKVNYMTICDGFIVSKNVQAKAYNINTHFEYA--- 243
Query: 109 STHCPLTIEYDFE 121
H P+ +E++ +
Sbjct: 244 -DHNPVRLEFELK 255
>gi|145529087|ref|XP_001450332.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417943|emb|CAK82935.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 32/124 (25%), Gaps = 22/124 (17%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
++ P ++ GD N + I ++ K +
Sbjct: 228 LRKKKPTILCGDLNVAHHEIDLSNPAGNKKTAGFTLQERDQFSNYLQKGWVDSFRHLHPK 287
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ R+ S D + S +I D + S H P+ E
Sbjct: 288 EVKYSFFSARSNSRSQNKGWRLDYFIINKEASDAITVSDINLTVEG----SDHVPIECEV 343
Query: 119 DFEK 122
D K
Sbjct: 344 DLRK 347
>gi|31083028|ref|NP_036250.2| nocturnin [Homo sapiens]
gi|212276446|sp|Q9UK39|NOCT_HUMAN RecName: Full=Nocturnin; AltName: Full=CCR4 protein homolog
gi|109731055|gb|AAI13495.1| CCR4 carbon catabolite repression 4-like (S. cerevisiae) [Homo
sapiens]
gi|109731718|gb|AAI13501.1| CCR4 carbon catabolite repression 4-like (S. cerevisiae) [Homo
sapiens]
gi|119625534|gb|EAX05129.1| CCR4 carbon catabolite repression 4-like (S. cerevisiae), isoform
CRA_a [Homo sapiens]
gi|119625536|gb|EAX05131.1| CCR4 carbon catabolite repression 4-like (S. cerevisiae), isoform
CRA_a [Homo sapiens]
Length = 431
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 39/126 (30%), Gaps = 7/126 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 302 CDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPPY 361
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEY 118
R + + + ++ +++ +Q + S S H L ++
Sbjct: 362 TTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDF 421
Query: 119 DFEKGN 124
F + +
Sbjct: 422 SFTEES 427
>gi|255075203|ref|XP_002501276.1| predicted protein [Micromonas sp. RCC299]
gi|226516540|gb|ACO62534.1| predicted protein [Micromonas sp. RCC299]
Length = 353
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 14/144 (9%), Positives = 26/144 (18%), Gaps = 34/144 (23%)
Query: 10 KKWADQK--IKTGIPFVIAGDFNRKINSIGDTDD---------------------FWQKM 46
+ + G P ++ GD N + + +
Sbjct: 212 RAYLAHLDGETRGKPVIVGGDLNVGHLDEDIYNVDAPHTKKQCGLTPEERSSWTRTLESV 271
Query: 47 DPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
F + R + F D +
Sbjct: 272 KLVDTFRAFHPNARGWYSYWSGRAGNKPRNRG--LRLDYFAASERIMSSGRDGGGVRVVD 329
Query: 106 SK--------LSTHCPLTIEYDFE 121
S S H P+ I +
Sbjct: 330 SFVLDKLVAEASDHAPVGITLALD 353
>gi|111054099|gb|ABH04240.1| DNA lyase-like protein [Mycosphaerella fijiensis]
Length = 622
Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 35/151 (23%), Gaps = 43/151 (28%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQK 45
L IK G ++ GD N + I F Q+
Sbjct: 174 ALDHRIRNLIKAGKSVILVGDLNVTRHEIDSGPTLEEMRKGLITHEEFISGPNRRIFNQQ 233
Query: 46 MDP----------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
+ F +++ K + L+
Sbjct: 234 LIDGEVVGERDEGREKGVFWDTTRIFHPDRKGM-YTHWDTKVNARPGNFGSRIDFVLVSE 292
Query: 90 SFSI-VSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ V Y S HCP+ I+++
Sbjct: 293 ALRSWVKYGNI---QEGLLGSDHCPVYIDFE 320
>gi|124009803|ref|ZP_01694472.1| endonuclease/exonuclease/phosphatase [Microscilla marina ATCC
23134]
gi|123984211|gb|EAY24567.1| endonuclease/exonuclease/phosphatase [Microscilla marina ATCC
23134]
Length = 356
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 31/134 (23%), Gaps = 16/134 (11%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ QQ + K ++ K G P+++ GDFN +
Sbjct: 220 MEQQVVHVNKMLKERTKQGHPWLLGGDFNLLPVGNAYRTLPKYQKKYYKPKTEIASFFND 279
Query: 62 TC--------------NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ DR + +
Sbjct: 280 YQAVPNIEQTRGENRAEWFTHFPNDPRVKQPDRTIDYIFFSKNIDLGKTGIG--QKDTWS 337
Query: 108 LSTHCPLTIEYDFE 121
+S H PL E+ +
Sbjct: 338 ISDHLPLMAEFSLK 351
>gi|89269844|emb|CAJ82549.1| deoxyribonuclease I-like 3 [Xenopus (Silurana) tropicalis]
Length = 295
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 4/119 (3%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D ++ F+ GD N + ++ + +KE
Sbjct: 160 REIDELYDVYLDVKQKWNSENFIFMGDLNAGCAYVPKKAWGNIRLRTHSEFVWLIGDKED 219
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
T + + + ++ S + + T L S H P+ ++
Sbjct: 220 TTVNASTKCAYDRIVMAGDKLLSSVVPGSAQVFDFMAVYGLTEDQALEVSDHFPVEVQL 278
>gi|299142905|ref|ZP_07036032.1| endonuclease/Exonuclease/phosphatase [Prevotella oris C735]
gi|298575634|gb|EFI47513.1| endonuclease/Exonuclease/phosphatase [Prevotella oris C735]
Length = 313
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 32/114 (28%), Gaps = 15/114 (13%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+IAGDFN + + + + + + SLD+ +
Sbjct: 201 ARIIIAGDFNDYTQDVSIQYLISRGLTDVSASAKGTHGAK-GTYKYRGEWGSLDHVLCSE 259
Query: 81 DNKNFLIDNSFSIVSYD-QSDLDTRRSKL-------------STHCPLTIEYDF 120
+ + + D + S H PL +++DF
Sbjct: 260 ALVPLFRSCTIADFPFLLTDDEVYGGLQPLRNFHGAKYLNGFSDHLPLVVKFDF 313
>gi|270293121|ref|ZP_06199332.1| exodeoxyribonuclease [Streptococcus sp. M143]
gi|270279100|gb|EFA24946.1| exodeoxyribonuclease [Streptococcus sp. M143]
Length = 275
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
++ + + P + GD+N N I + + + G
Sbjct: 150 AEYLAE-LDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDT 208
Query: 55 FPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +R+K+S +L N + +D+ +
Sbjct: 209 FRHVHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--D 265
Query: 111 HCPLTIEYDF 120
H P+ +E +
Sbjct: 266 HTPIVMEIEL 275
>gi|147902412|ref|NP_001089262.1| CCR4 carbon catabolite repression 4-like [Xenopus laevis]
gi|58399136|gb|AAH89295.1| MGC85016 protein [Xenopus laevis]
Length = 459
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 34/129 (26%), Gaps = 7/129 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE--- 58
L+Q + L +P +I GDFN + ++ + ++
Sbjct: 326 LAQGTDLLHNLESITQGATVPLIICGDFNAEPTEEVYKRFASSSLNLNSAYKLLSEDGES 385
Query: 59 KESTCNVIKRNKSS----LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ R LDY + + + S H L
Sbjct: 386 EPPYTTWKIRPTGESCHTLDYIWYSQHALRVNNALGLPTEEQIGPNRLPSFNYPSDHLSL 445
Query: 115 TIEYDFEKG 123
++ F +
Sbjct: 446 VCDFSFNED 454
>gi|322377529|ref|ZP_08052020.1| exodeoxyribonuclease III [Streptococcus sp. M334]
gi|321281729|gb|EFX58738.1| exodeoxyribonuclease III [Streptococcus sp. M334]
Length = 275
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
++ Q + P + GD+N N I + + + G
Sbjct: 150 AEYLAQ-LDKEKPVLATGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDT 208
Query: 55 FPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +R+K+S +L N + +D+ +
Sbjct: 209 FRHIHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVTKSDMIDSGARQ--D 265
Query: 111 HCPLTIEYDF 120
H P+ +E +
Sbjct: 266 HTPIVMEIEL 275
>gi|182412613|ref|YP_001817679.1| endonuclease/exonuclease/phosphatase [Opitutus terrae PB90-1]
gi|177839827|gb|ACB74079.1| Endonuclease/exonuclease/phosphatase [Opitutus terrae PB90-1]
Length = 808
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 28/113 (24%), Gaps = 14/113 (12%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+W ++ V+ GDFN S ++ + + +
Sbjct: 700 EWLGG-LRDDERVVLCGDFNLTPGSAPYG-LMANRLQDAQAARDGHRPLSTFSSNRP--- 754
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ I F + + R S H PL ++
Sbjct: 755 --------FVRLDHIFISPHFRVQDVRVPRSELTRV-ASDHLPLIVDLALAPA 798
>gi|257866617|ref|ZP_05646270.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257872867|ref|ZP_05652520.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257800575|gb|EEV29603.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257807031|gb|EEV35853.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
Length = 257
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 35/123 (28%), Gaps = 14/123 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L Q + ++++ P ++ GD N + + + +
Sbjct: 147 ILEQLADQIERY---------PVLLMGDLNAEPTERVHRYLEQHFQNAKEHGQKPHHGPK 197
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+N + + F++V R S H PL E F
Sbjct: 198 G----SYQNFIYTLPWQELEEIDYIY-TKGFTVVKTACLTDSYDRRFPSDHFPLEAEVQF 252
Query: 121 EKG 123
E+
Sbjct: 253 EES 255
>gi|307707550|ref|ZP_07644032.1| exodeoxyribonuclease III [Streptococcus mitis NCTC 12261]
gi|307616502|gb|EFN95693.1| exodeoxyribonuclease III [Streptococcus mitis NCTC 12261]
Length = 275
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEK 59
++ P + +GD+N N I + + + G F
Sbjct: 154 AELDKEKPVLASGDYNVAHNEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDTFRHIH 213
Query: 60 ES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+R+K+S +L N + +D+ + H P+
Sbjct: 214 GDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVTKSDMIDSGARQ--DHTPIV 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 LEIEL 275
>gi|149187906|ref|ZP_01866202.1| putative phospholipase C precursor [Vibrio shilonii AK1]
gi|148838302|gb|EDL55243.1| putative phospholipase C precursor [Vibrio shilonii AK1]
Length = 442
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 11/125 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I + +GDFN + D ++
Sbjct: 314 QRQFKQIRALAQSLDIPANEAVIYSGDFNVNKLKFPDDYQQMMTNLNVSEPQYSGYTAST 373
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ +L ++ N + SY+ + +D + LS H
Sbjct: 374 FDPRINDFAGGALSGGANVEYLDYVMVSNEYGTKSYNDNRVDVPRTTDESLWKHYNLSDH 433
Query: 112 CPLTI 116
P+T
Sbjct: 434 FPVTA 438
>gi|319790707|ref|YP_004152347.1| endonuclease/exonuclease/phosphatase [Variovorax paradoxus EPS]
gi|315593170|gb|ADU34236.1| Endonuclease/exonuclease/phosphatase [Variovorax paradoxus EPS]
Length = 262
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 33/118 (27%), Gaps = 14/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E L ++ P ++AGDFN + + D + +
Sbjct: 159 QQQLELLCHIVRDEVPADAPLIVAGDFNDWRG--RAHEVLEKGADLREVFVHA------- 209
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ V S LS H PL + D
Sbjct: 210 ---NGRAARTFPSRFPLLPLDRIYVRNA--GVHAPVVLPRRPWSHLSDHAPLVADIDL 262
>gi|88811277|ref|ZP_01126533.1| Endonuclease/exonuclease/phosphatase [Nitrococcus mobilis Nb-231]
gi|88791816|gb|EAR22927.1| Endonuclease/exonuclease/phosphatase [Nitrococcus mobilis Nb-231]
Length = 280
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 37/120 (30%), Gaps = 23/120 (19%)
Query: 5 QGEWLKK--WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L++ + + + ++ GD N S+ + +D L +
Sbjct: 176 QRTRLRQLAYVAELVNACRHVIVMGDLNCLSRSVE-----FDYLDKHTDLCEPIHNLHTY 230
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + L+ + + S + + LS H P+ +E + +
Sbjct: 231 PSWRPHRN-----------IDHILVSPTLQVRSAEALNYP-----LSDHLPVIMEVELPE 274
>gi|325299447|ref|YP_004259364.1| Endonuclease/exonuclease/phosphatase [Bacteroides salanitronis DSM
18170]
gi|324319000|gb|ADY36891.1| Endonuclease/exonuclease/phosphatase [Bacteroides salanitronis DSM
18170]
Length = 358
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 11/111 (9%), Positives = 25/111 (22%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + + ++ GDFN S L +
Sbjct: 262 QADSVARAIRENRADY--MLVCGDFNDSPVSYAYRVI-------GEGLDDAFVAAGAGPG 312
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + +F ++ + S H P+
Sbjct: 313 FTYNQNHLYF------RIDHIFVSPAFRVLECKVDRSI----RASDHYPVW 353
>gi|224066090|ref|XP_002193790.1| PREDICTED: deoxyribonuclease I-like 3 [Taeniopygia guttata]
Length = 491
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 6/122 (4%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D ++ F+ GDFN + + ++ + +K
Sbjct: 322 REIDELYDVYLDVKQRWKIENFIFMGDFNAGCSYVPKKQWKNIRLRTYSEFLWLIGDKND 381
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYD 119
T V + ++ +S +I + + T L S H P+ E++
Sbjct: 382 TTVKNTTRCPYDRIVVRGQKLIQAVVPHSVNIFDFQEEFQMTEEQALGVSDHFPV--EFE 439
Query: 120 FE 121
+
Sbjct: 440 LK 441
>gi|82753368|ref|XP_727650.1| sphingomyelin/lysocholinephospholipid-phospholipase C [Plasmodium
yoelii yoelii str. 17XNL]
gi|23483595|gb|EAA19215.1| sphingomyelin/lysocholinephospholipid-phospholipase C-related
[Plasmodium yoelii yoelii]
Length = 504
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 34/153 (22%), Gaps = 33/153 (21%)
Query: 3 SQQGEWLKKWA-----DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ 57
+Q E L KW + IK P GDFN I D + F + L
Sbjct: 344 RKQIEELTKWVYNGVPSKFIKNSEPLFFVGDFNI--RYIKDENFFKEITSSKYLNCTVTN 401
Query: 58 EKESTCNVIK-----RNKSSLDYFVIDRDNKNFLIDNS---------------------F 91
T R L+ + F
Sbjct: 402 NTLETTYDSSINDYCRYIEDDFEHKYVDTLDYILVSKNSNIKTIVPQTAVQHGYKPISIF 461
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ S H P+ + F N
Sbjct: 462 KTILCCIPYQSINIHHASDHFPIYATFKFPSNN 494
>gi|332297419|ref|YP_004439341.1| Endonuclease/exonuclease/phosphatase [Treponema brennaborense DSM
12168]
gi|332180522|gb|AEE16210.1| Endonuclease/exonuclease/phosphatase [Treponema brennaborense DSM
12168]
Length = 358
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 37/131 (28%), Gaps = 16/131 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDG------LLIRFPQ 57
+ E L + +P V+ GDFNR I + + + DG L
Sbjct: 218 RAAELLYA-VLPADENRLPVVLCGDFNRDIGEFTEDGADGRAVCMDGVSLKSGWLSFSSA 276
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNF---------LIDNSFSIVSYDQSDLDTRRSKL 108
+ + + N +D+F I S + V
Sbjct: 277 DTGAGSYFYRNNWEKIDHFFIAGAIDFVDFKAESDGPWSRLSDTGVLVPFRYELWNGQGY 336
Query: 109 STHCPLTIEYD 119
S H P+ +
Sbjct: 337 SDHFPIAATFR 347
>gi|213964825|ref|ZP_03393024.1| exonuclease III [Corynebacterium amycolatum SK46]
gi|213952361|gb|EEB63744.1| exonuclease III [Corynebacterium amycolatum SK46]
Length = 318
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 20/76 (26%)
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ D P+ R K+ D + VS
Sbjct: 242 ADPVWFDVTRRLHPEADGPWSWWTYRGKAFDTDAGWRIDYQAATEPMLKRAVSAVVDKPA 301
Query: 103 TRRSKLSTHCPLTIEY 118
T + + H P+ +EY
Sbjct: 302 TYDLRWTDHAPVIVEY 317
>gi|86356381|ref|YP_468273.1| exodeoxyribonuclease III protein [Rhizobium etli CFN 42]
gi|86280483|gb|ABC89546.1| probable exodeoxyribonuclease III protein [Rhizobium etli CFN 42]
Length = 90
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 20/78 (25%)
Query: 43 WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ + + + + I D+ + + + S
Sbjct: 11 LENLGLTDAVRATTDATRLYSFWDYQAGAWPKNNGIRIDHLLLSPEAADRMTSAAIEKHV 70
Query: 103 TRRSKLSTHCPLTIEYDF 120
K S H P+ +DF
Sbjct: 71 RAWEKPSDHVPVIAYFDF 88
>gi|4503347|ref|NP_001365.1| deoxyribonuclease-1-like 2 precursor [Homo sapiens]
gi|2494172|sp|Q92874|DNSL2_HUMAN RecName: Full=Deoxyribonuclease-1-like 2; AltName: Full=DNase I
homolog protein DHP1; AltName: Full=Deoxyribonuclease
I-like 2; Short=DNase I-like 2; Flags: Precursor
gi|1518784|gb|AAB63981.1| DNase 1 homolog [Homo sapiens]
gi|23270879|gb|AAH35205.1| DNASE1L2 protein [Homo sapiens]
gi|34500280|gb|AAQ73761.1| deoxyribonuclease I-like 2 long form [Homo sapiens]
gi|39645606|gb|AAH63710.1| Deoxyribonuclease I-like 2 [Homo sapiens]
gi|119605932|gb|EAW85526.1| deoxyribonuclease I-like 2, isoform CRA_a [Homo sapiens]
gi|119605933|gb|EAW85527.1| deoxyribonuclease I-like 2, isoform CRA_a [Homo sapiens]
gi|119605935|gb|EAW85529.1| deoxyribonuclease I-like 2, isoform CRA_a [Homo sapiens]
gi|193783655|dbj|BAG53566.1| unnamed protein product [Homo sapiens]
Length = 299
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 13/102 (12%), Positives = 32/102 (31%), Gaps = 3/102 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+ GDFN + + D ++ + + + V + +
Sbjct: 197 DDMLFLGDFNADCSYVRAQDWAAIRLRSSEVFKWLIPDS-ADTTVGNSDCAYDRIVACGA 255
Query: 81 DNKNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPLTIEYDF 120
+ L S ++ + + T+ +S H P+ + F
Sbjct: 256 RLRRSLKPQSATVHDFQEEFGLDQTQALAISDHFPVEVTLKF 297
>gi|332308078|ref|YP_004435929.1| Endonuclease/exonuclease/phosphatase [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175407|gb|AEE24661.1| Endonuclease/exonuclease/phosphatase [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 237
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 20/118 (16%)
Query: 3 SQQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L ++ +Q + + IP ++ GDFN Q + + FP
Sbjct: 132 RKQFALLAEYLEQSMAVSSIPLIVGGDFNEWQFFTRAFRTINQVLTEQKVAATFPTAWPL 191
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + R S H P+ + +D
Sbjct: 192 F------------------RLDRMWTSFNDNKIEAQVLKTPETRYY-SDHYPILLTFD 230
>gi|295425010|ref|ZP_06817719.1| exodeoxyribonuclease III [Lactobacillus amylolyticus DSM 11664]
gi|295065328|gb|EFG56227.1| exodeoxyribonuclease III [Lactobacillus amylolyticus DSM 11664]
Length = 275
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF-------------- 42
L + + W +++ + Q++ P + +GDFN I
Sbjct: 136 LKRLADRQVWDQRYIEYLQQLDKQKPVLASGDFNCAHTPIDLKHPENNHHSAGFTDEERK 195
Query: 43 -WQKMDPDGLLIRFP----QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ G F + +R +++ +L N +
Sbjct: 196 DFTQLLDAGFTDSFRKINGNVEGVYSWWAQRVRTAKAN-NSGWRIDYWLTSNRIADKIRR 254
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+DT + HCP+ ++ D
Sbjct: 255 SEMIDTGKRA--DHCPILLDIDL 275
>gi|242061544|ref|XP_002452061.1| hypothetical protein SORBIDRAFT_04g017843 [Sorghum bicolor]
gi|241931892|gb|EES05037.1| hypothetical protein SORBIDRAFT_04g017843 [Sorghum bicolor]
Length = 503
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 7/115 (6%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNR--KINSIGDTDDFWQKMDPDGLLIRFPQE----KEST 62
L + ++ +P++ AGDFN Q + E S
Sbjct: 295 LMEELKEQDGDHLPWLCAGDFNEILYHYEKEGGIPRTQACLDRFKEVLETCELDDLGFSG 354
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
RNK + I + + S+ + + ++ + S H P+ ++
Sbjct: 355 DVFTWRNKHNKGSTYIRERLDRAVANMSWRMK-FPLVNVKNGDTYHSDHRPVVVD 408
>gi|256851697|ref|ZP_05557085.1| exodeoxyribonuclease III [Lactobacillus jensenii 27-2-CHN]
gi|260661585|ref|ZP_05862497.1| exodeoxyribonuclease III [Lactobacillus jensenii 115-3-CHN]
gi|282934219|ref|ZP_06339496.1| exodeoxyribonuclease III [Lactobacillus jensenii 208-1]
gi|256615655|gb|EEU20844.1| exodeoxyribonuclease III [Lactobacillus jensenii 27-2-CHN]
gi|260547642|gb|EEX23620.1| exodeoxyribonuclease III [Lactobacillus jensenii 115-3-CHN]
gi|281301693|gb|EFA93960.1| exodeoxyribonuclease III [Lactobacillus jensenii 208-1]
Length = 275
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 19/136 (13%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----FWQKMDPDGLLIRFP 56
+QG W KK+ + QK+ P + +GD+N I +
Sbjct: 141 DRQG-WDKKYIEYLQKLDKEKPVLASGDYNVAHEEIDLKHPENNHHSAGFTDEERADFTE 199
Query: 57 QEKESTCNVIKRNKSSLD--YFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLS---- 109
+ ++ ++ Y + K +NS + Y S+ + K S
Sbjct: 200 LLSTGFTDSFRKIHGNIPEVYSWWAQRIKTAKANNSGWRIDYWLTSNRIADKIKKSEMMD 259
Query: 110 -----THCPLTIEYDF 120
HCP+ +E D
Sbjct: 260 TGERADHCPIVLEIDL 275
>gi|322375755|ref|ZP_08050267.1| exodeoxyribonuclease III [Streptococcus sp. C300]
gi|321279463|gb|EFX56504.1| exodeoxyribonuclease III [Streptococcus sp. C300]
Length = 275
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
++ Q + P + GD+N I + + + G
Sbjct: 150 AEYLAQ-LDKEKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDT 208
Query: 55 FPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +R+K+S +L N + +D+ +
Sbjct: 209 FRHIHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--D 265
Query: 111 HCPLTIEYDF 120
H P+ +E +
Sbjct: 266 HTPIVLEIEL 275
>gi|15222370|ref|NP_174438.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
thaliana]
gi|12597850|gb|AAG60160.1|AC074360_25 hypothetical protein [Arabidopsis thaliana]
gi|332193247|gb|AEE31368.1| DNAse I-like protein [Arabidopsis thaliana]
Length = 283
Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 2/114 (1%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
K+ ++AGDFN K + + D L + +
Sbjct: 171 KEIISALTNCSPSVILAGDFNSKPYVHKYIN--SDNIPSDIDLRSVYEFTKGEPRFTNNV 228
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + +I + S D+ D S H P+ +E++ +
Sbjct: 229 PGFAETLDYMFYTHSEIISPVKLLDSPDEVDFLPNEIHPSDHLPIGVEFEINRN 282
>gi|121603084|ref|YP_980413.1| exodeoxyribonuclease III Xth [Polaromonas naphthalenivorans CJ2]
gi|120592053|gb|ABM35492.1| exodeoxyribonuclease III Xth [Polaromonas naphthalenivorans CJ2]
Length = 319
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 4/76 (5%)
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
M + E+ R ++ D + S +
Sbjct: 246 GMVDVYRRLHPATTDEAYTWWSNRGQAYAKNVGWRLDYHLATPGFGATAHSASIH----K 301
Query: 105 RSKLSTHCPLTIEYDF 120
+ S H PLTIEYD+
Sbjct: 302 AQRFSDHAPLTIEYDW 317
>gi|306824688|ref|ZP_07458032.1| exodeoxyribonuclease III [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304432899|gb|EFM35871.1| exodeoxyribonuclease III [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 275
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
++ Q + P + GD+N I + + + G
Sbjct: 150 AEYLAQ-LDKEKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDT 208
Query: 55 FPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +R+K+S +L N S +D+ +
Sbjct: 209 FRHIHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVSDKVTKSDMIDSGARQ--D 265
Query: 111 HCPLTIEYDF 120
H P+ +E +
Sbjct: 266 HTPIVLEIEL 275
>gi|218512836|ref|ZP_03509676.1| Endonuclease/exonuclease/phosphatase [Rhizobium etli 8C-3]
Length = 186
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 29/116 (25%), Gaps = 16/116 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L ++ V+ GDFN +S + + GL
Sbjct: 86 EEQALALAGLVERVWPGSEGLVVCGDFNVLPDS-----ATFNILARMGLSDLVTGNGLVD 140
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K L+ + ++ +S H L ++
Sbjct: 141 TRTSYYLKQGRF-------ADYMLVTPEVKVARFEVVATPE----VSDHRALLLDI 185
>gi|291223046|ref|XP_002731525.1| PREDICTED: angel-like [Saccoglossus kowalevskii]
Length = 349
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 39/126 (30%), Gaps = 8/126 (6%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES-TC 63
QG+ L + +++ G P V GDFN + + ++ ++ + +
Sbjct: 218 QGKILLEHLNKQ-SRGRPIVFCGDFNAESSEPVYSEFQNSNLNLKSTYQLLSENGNTEPE 276
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------STHCPLTIE 117
+ + S + + + + +D + S H L +
Sbjct: 277 YTTWKIRPSGEAKHTIDYIWHSEDQLTIDALLPIPTDSQLGDERAPSYITSSDHFSLVFD 336
Query: 118 YDFEKG 123
F+
Sbjct: 337 LRFKSS 342
>gi|227502780|ref|ZP_03932829.1| possible exodeoxyribonuclease III [Corynebacterium accolens ATCC
49725]
gi|227076510|gb|EEI14473.1| possible exodeoxyribonuclease III [Corynebacterium accolens ATCC
49725]
Length = 297
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 19/80 (23%)
Query: 39 TDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ D P+ R ++ + D +
Sbjct: 217 WEPATAPQWFDVARRLHPEADGPYTWWTYRGQAFNNDAGWRIDYQAATQPLLDRAQRTWV 276
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
T + S H PL +EY
Sbjct: 277 DKAPTVEQRWSDHSPLLVEY 296
>gi|12322536|gb|AAG51265.1|AC027135_6 hypothetical protein [Arabidopsis thaliana]
Length = 274
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 2/114 (1%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
K+ ++AGDFN K + + D L + +
Sbjct: 162 KEIISALTNCSPSVILAGDFNSKPYVHKYIN--SDNIPSDIDLRSVYEFTKGEPRFTNNV 219
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + +I + S D+ D S H P+ +E++ +
Sbjct: 220 PGFAETLDYMFYTHSEIISPVKLLDSPDEVDFLPNEIHPSDHLPIGVEFEINRN 273
>gi|331265838|ref|YP_004325468.1| exodeoxyribonuclease III [Streptococcus oralis Uo5]
gi|326682510|emb|CBZ00127.1| exodeoxyribonuclease III [Streptococcus oralis Uo5]
Length = 275
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
++ + + P + GD+N I + + + G
Sbjct: 150 AEYLAE-LDKEKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDT 208
Query: 55 FPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +R+K+S +L N + +D+ +
Sbjct: 209 FRHIHGDVPECYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--D 265
Query: 111 HCPLTIEYDF 120
H P+ +E +
Sbjct: 266 HTPIVLEIEL 275
>gi|51261555|gb|AAH80151.1| deoxyribonuclease 1-like 3 [Xenopus (Silurana) tropicalis]
Length = 295
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 4/119 (3%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D ++ F+ GD N + ++ + +KE
Sbjct: 160 REIDELYDVYLDVKQKWNSENFIFMGDLNAGCAYVPKKAWGNIRLRTHSEFVWLIGDKED 219
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
T + + + ++ S + + T L S H P+ ++
Sbjct: 220 TTVKASTKCAYDRIVMAGDKLLSSVVPGSAQVFDFMAVYGLTEDQALEVSDHFPVEVQL 278
>gi|45360457|ref|NP_988919.1| deoxyribonuclease I-like 3 [Xenopus (Silurana) tropicalis]
gi|38181666|gb|AAH61621.1| deoxyribonuclease 1-like 3 [Xenopus (Silurana) tropicalis]
Length = 295
Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 4/119 (3%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D ++ F+ GD N + ++ + +KE
Sbjct: 160 REIDELYDVYLDVKQKWNSENFIFMGDLNAGCAYVPKKAWGNIRLRTHSEFVWLIGDKED 219
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
T + + + ++ S + + T L S H P+ ++
Sbjct: 220 TTVKASTKCAYDRIVMAGDKLLSSVVPGSAQVFDFMAVYGLTEDQALEVSDHFPVEVQL 278
>gi|241954618|ref|XP_002420030.1| endonuclease/exonuclease/phosphatase family protein, putative
[Candida dubliniensis CD36]
gi|223643371|emb|CAX42248.1| endonuclease/exonuclease/phosphatase family protein, putative
[Candida dubliniensis CD36]
Length = 362
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 21/124 (16%), Gaps = 24/124 (19%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P + GDFN + N +LI
Sbjct: 241 NDYPSFLCGDFNTEPNDEPYHILTTAGFKDGKILIDKNSAYGFET----TFTGFDINNEP 296
Query: 79 DRDNKNFLIDN--------------------SFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ + S H P+ Y
Sbjct: 297 ISRIDYIWSPAFTHTSLSSENETGNDSDDTYEVTLKQFGILSNWFNGHHFSDHRPVVSTY 356
Query: 119 DFEK 122
+ K
Sbjct: 357 ELRK 360
>gi|77464360|ref|YP_353864.1| endonuclease/exonuclease/phosphatase fa [Rhodobacter sphaeroides
2.4.1]
gi|77388778|gb|ABA79963.1| possible Endonuclease/Exonuclease/phosphatase fa [Rhodobacter
sphaeroides 2.4.1]
Length = 339
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/144 (11%), Positives = 40/144 (27%), Gaps = 28/144 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-----------------------TDD 41
+ WL++ + ++ GDFN +
Sbjct: 196 ECVWLRRRVAGLLARHQSVMVMGDFNDGPGLDEYEKLFGRSGIEIVLGLEEPPELRLHEP 255
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSY 96
+ + I+ + + ++ LD+ ++ D + + +
Sbjct: 256 HARMALTQRVGIQPSSARFWLAPEQQYFEALLDFIMVSADLAAKSPRWRIWHPLNDPNCF 315
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
+L S H P+T++ D
Sbjct: 316 RTPELQQALLAASDHFPVTLDIDL 339
>gi|322389122|ref|ZP_08062685.1| exodeoxyribonuclease [Streptococcus parasanguinis ATCC 903]
gi|321144164|gb|EFX39579.1| exodeoxyribonuclease [Streptococcus parasanguinis ATCC 903]
Length = 282
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF-------------- 42
L + E W K+A+ + P + GD+N I +
Sbjct: 143 LKRLAERQVWDVKYAEYLADLDKEKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERE 202
Query: 43 -WQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + G F +R+K+S +L N +
Sbjct: 203 GFTNLLAKGFTDTFRHVHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVTK 261
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+D+ + H P+ +E D
Sbjct: 262 SDMIDSGARQ--DHTPIVLEIDL 282
>gi|187927447|ref|YP_001897934.1| endonuclease/exonuclease/phosphatase [Ralstonia pickettii 12J]
gi|309779851|ref|ZP_07674606.1| endonuclease/exonuclease/phosphatase [Ralstonia sp. 5_7_47FAA]
gi|187724337|gb|ACD25502.1| Endonuclease/exonuclease/phosphatase [Ralstonia pickettii 12J]
gi|308921428|gb|EFP67070.1| endonuclease/exonuclease/phosphatase [Ralstonia sp. 5_7_47FAA]
Length = 248
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 13/116 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L + P V+AGDFN N + Q + + + +
Sbjct: 143 QRQAEALVDRVRSVVPPDAPLVVAGDFNDWNNRLD--RTICQALGATEVADKAANARPVR 200
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + ++ + + + S H PL E
Sbjct: 201 TFPSH---------MPWLRLDRIYVRGFDIERAHALTGREWAQR--SDHVPLLAEL 245
>gi|302405771|ref|XP_003000722.1| endonuclease/exonuclease/phosphatase family protein [Verticillium
albo-atrum VaMs.102]
gi|261360679|gb|EEY23107.1| endonuclease/exonuclease/phosphatase family protein [Verticillium
albo-atrum VaMs.102]
Length = 334
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 13/126 (10%), Positives = 37/126 (29%), Gaps = 12/126 (9%)
Query: 4 QQGEWLKKWADQKI----KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+ L ++A + P + GD N + + + D + +
Sbjct: 202 ESARLLVRFAAEAAVVVDGEETPVFLGGDLNITPENPAYLEMVAEGNYHDAKDVV---DP 258
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLID----NSFSIVSYDQSDLDTRRS-KLSTHCPL 114
+ D + + ++++Y + + +S H P+
Sbjct: 259 RRIHGHLNTFAGFSDDRSGWSRIDHVFVWRPEVQGMALLNYGVLENKFDDNLWISDHRPV 318
Query: 115 TIEYDF 120
++ +F
Sbjct: 319 IVDVNF 324
>gi|227432019|ref|ZP_03914038.1| exodeoxyribonuclease III [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227352217|gb|EEJ42424.1| exodeoxyribonuclease III [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 285
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/131 (8%), Positives = 32/131 (24%), Gaps = 27/131 (20%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDP---DGL 51
+++ ++ P + +GD N I + + +
Sbjct: 160 REYIK-RLDATKPVIFSGDMNVAHQEIDLKNPKPNRHSAGFTDQEREKFSALLDAGFTDT 218
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV---SYDQSDLDTRRSKL 108
+ S + + +L+ + + S +
Sbjct: 219 FRSLNPDTPSVYTWWAQISKTSKINNSGWRIDYYLVSDRIAENVTESCVIDTGARQ---- 274
Query: 109 STHCPLTIEYD 119
H P+ +E +
Sbjct: 275 -DHAPILLEIN 284
>gi|284033875|ref|YP_003383806.1| endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
gi|283813168|gb|ADB35007.1| Endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
Length = 320
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 31/123 (25%), Gaps = 7/123 (5%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL------IRFPQ 57
+Q E + + ++ T +++ GD N S + ++
Sbjct: 197 RQAETITRIIASRMSTRQRYLLCGDMNDVPGSPTLAAFEQAGLVDALRTPKEVGAVKTKV 256
Query: 58 EKESTCNVIKRNKS-SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
E + K+ D + + + + H P I
Sbjct: 257 ELPTDPAWTSTFKASGQPRSFDLIDQIWLSPALAPKLTAAWIGRRRKLARDGTDHDPAWI 316
Query: 117 EYD 119
D
Sbjct: 317 SLD 319
>gi|29501194|dbj|BAC67539.1| DNA lyase [Isaria tenuipes]
Length = 607
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/156 (9%), Positives = 32/156 (20%), Gaps = 43/156 (27%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFW 43
+Q E L+ I G ++ GD N + + ++
Sbjct: 161 RQSFVEALEARIRNLIAAGKQVILTGDLNIIRSEMDSSNVAEGLKKEGMTMEEWQSMPTR 220
Query: 44 QKMDP--------------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ ++ + F + K + +
Sbjct: 221 RILNQLLFDGSVIGPRDKAREDGVLWDICRCFHPTRRGMHTC-WDTKRNTRPANLGSRID 279
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S HCP+
Sbjct: 280 YILCSDGIKDW--FVDSNIQEGLMGSDHCPVYATMR 313
>gi|332827347|gb|EGK00107.1| hypothetical protein HMPREF9455_03573 [Dysgonomonas gadei ATCC
BAA-286]
Length = 382
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 29/121 (23%), Gaps = 20/121 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ Q ++ + D++ ++ GDFN S +D
Sbjct: 282 IRESQVNLIRSFMDKQDAKA--TIVCGDFNDTPISYAYHTMKGDLVDS-------YANSG 332
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ L +F + + S H P+ F
Sbjct: 333 FGQGITYHENYF------WVRIDFILHSRAFESYNCTVDKVKY-----SDHYPVWTYLAF 381
Query: 121 E 121
+
Sbjct: 382 K 382
>gi|306835369|ref|ZP_07468390.1| possible exodeoxyribonuclease III [Corynebacterium accolens ATCC
49726]
gi|304568735|gb|EFM44279.1| possible exodeoxyribonuclease III [Corynebacterium accolens ATCC
49726]
Length = 297
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 19/80 (23%)
Query: 39 TDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ D P+ R ++ + D +
Sbjct: 217 WEPATAPQWFDVARRLQPEADGPYTWWTYRGQAFNNDAGWRIDYQAATQPLLDRAQRTWV 276
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
T + S H PL +EY
Sbjct: 277 DKAPTVEQRWSDHSPLLVEY 296
>gi|227547961|ref|ZP_03978010.1| extracellular nuclease [Corynebacterium lipophiloflavum DSM 44291]
gi|227079972|gb|EEI17935.1| extracellular nuclease [Corynebacterium lipophiloflavum DSM 44291]
Length = 1044
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 35/137 (25%), Gaps = 20/137 (14%)
Query: 5 QGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q L ++ P I GD N + F
Sbjct: 691 QSTALIDALKEQDDWANKPTFIVGDLNSYSREDAVRYLEQEGFSNIASRREFDNA----S 746
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK---------------L 108
SLD+ + + + D + ++ D+S +
Sbjct: 747 YQFAGQLGSLDHVMGNAAATALVQDAAVWNINADESIAFEYSRRNYNVQDFFEANNPFRS 806
Query: 109 STHCPLTIEYDFEKGNV 125
S H P+ + ++ E V
Sbjct: 807 SDHDPVKVGFNIEATAV 823
>gi|325121513|gb|ADY81036.1| putative extracellular nuclease [Acinetobacter calcoaceticus
PHEA-2]
Length = 812
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/145 (9%), Positives = 38/145 (26%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +W + ++ GD N + Q ++
Sbjct: 635 KAVDQIVQWLAKNPTQVPKQNALLVGDMNSYAKEEPILSFEKANYKVLLNDAKVGQGTQA 694
Query: 62 TCNVIK--------RNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSD----- 100
V +LD+ + D + + +++ Y++
Sbjct: 695 YSYVFGVASDANGNGGAGNLDHAIADAALYPKVVRTFAWHINADEPTVLDYNEEYKTDEQ 754
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D
Sbjct: 755 KALFYGEDAYRSSDHDPVIVDLDLN 779
>gi|312867077|ref|ZP_07727287.1| exodeoxyribonuclease III [Streptococcus parasanguinis F0405]
gi|311097206|gb|EFQ55440.1| exodeoxyribonuclease III [Streptococcus parasanguinis F0405]
Length = 275
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
++ + + P + GD+N I + + + G
Sbjct: 150 AEYLAE-LDKEKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEEREGFTNLLAKGFTDT 208
Query: 55 FPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +R+K+S +L N + +D+ +
Sbjct: 209 FRHVHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--D 265
Query: 111 HCPLTIEYDF 120
H P+ +E D
Sbjct: 266 HTPIVLEIDL 275
>gi|86360979|ref|YP_472866.1| putative metal-dependent hydrolase protein [Rhizobium etli CFN 42]
gi|86285081|gb|ABC94139.1| putative metal-dependent hydrolase protein [Rhizobium etli CFN 42]
Length = 242
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 29/119 (24%), Gaps = 16/119 (13%)
Query: 4 QQGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W +P ++ GDFN +S + +
Sbjct: 137 RQMTTLLNSGWLRGPSDEPVPGILCGDFNAIPSSATYR-LAARSLTDAQ---LAGSAAPR 192
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ LD+ + +V S H PL E F
Sbjct: 193 ATFPSRYPLMRLDHIFVTEGL----------VVQRATVLQTRLTRVASDHLPLLAEISF 241
>gi|73984049|ref|XP_540938.2| PREDICTED: similar to CCR4 carbon catabolite repression 4-like
[Canis familiaris]
Length = 474
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 38/125 (30%), Gaps = 7/125 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 345 CDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPPY 404
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEY 118
R + + + ++ +++ +Q + S S H L ++
Sbjct: 405 TTWKIRTSGECRHTLDYIWYSKHALSVKSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDF 464
Query: 119 DFEKG 123
F +
Sbjct: 465 SFNEE 469
>gi|288929073|ref|ZP_06422919.1| endonuclease/exonuclease/phosphatase family protein [Prevotella sp.
oral taxon 317 str. F0108]
gi|288330057|gb|EFC68642.1| endonuclease/exonuclease/phosphatase family protein [Prevotella sp.
oral taxon 317 str. F0108]
Length = 313
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 34/142 (23%), Gaps = 29/142 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + K D +P V+ GDFN D ++ + E+
Sbjct: 175 RESAKLVMKAIDGLGGKDMPVVLTGDFNVDQTDETYAIFTANARLNDAYVVAKHRFAENG 234
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY------------------------DQ 98
S + + F++ Y
Sbjct: 235 T-----FNSFDPTLKTTSRIDHVFVSPRFAVARYGVLPNFYWTEEPAAKSQKGQDAPQQI 289
Query: 99 SDLDTRRSKLSTHCPLTIEYDF 120
R S H P+ +E +
Sbjct: 290 DFKQHRIRTASDHYPVFVEVNL 311
>gi|182435135|ref|YP_001822854.1| putative endonuclease/exonuclease/phosphatase family protein
[Streptomyces griseus subsp. griseus NBRC 13350]
gi|178463651|dbj|BAG18171.1| putative endonuclease/exonuclease/phosphatase family protein
[Streptomyces griseus subsp. griseus NBRC 13350]
Length = 781
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 29/119 (24%), Gaps = 14/119 (11%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ + + +K V GDFN S + + P E+
Sbjct: 668 QQAAEVNTFVTAVLKADRSAKVVALGDFNDFEFSPTMKTLTRGRALKPLITTLPPSER-- 725
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYD 119
V N + + L YD + S H P +
Sbjct: 726 YSYVFDGN---------SQTLDHILTSPGVRRPDYDVVHINAEFADQASDHDPQVVRIR 775
>gi|34500277|gb|AAQ73759.1| deoxyribonuclease I-like 2 short form [Homo sapiens]
gi|34500279|gb|AAQ73760.1| deoxyribonuclease I-like 2 short form [Homo sapiens]
gi|119605934|gb|EAW85528.1| deoxyribonuclease I-like 2, isoform CRA_b [Homo sapiens]
Length = 278
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 13/102 (12%), Positives = 32/102 (31%), Gaps = 3/102 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+ GDFN + + D ++ + + + V + +
Sbjct: 176 DDMLFLGDFNADCSYVRAQDWAAIRLRSSEVFKWLIPDS-ADTTVGNSDCAYDRIVACGA 234
Query: 81 DNKNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPLTIEYDF 120
+ L S ++ + + T+ +S H P+ + F
Sbjct: 235 RLRRSLKPQSATVHDFQEEFGLDQTQALAISDHFPVEVTLKF 276
>gi|115488172|ref|NP_001066573.1| Os12g0279600 [Oryza sativa Japonica Group]
gi|77554323|gb|ABA97119.1| exodeoxyribonuclease III family protein, expressed [Oryza sativa
Japonica Group]
gi|113649080|dbj|BAF29592.1| Os12g0279600 [Oryza sativa Japonica Group]
gi|215687325|dbj|BAG91875.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222616909|gb|EEE53041.1| hypothetical protein OsJ_35763 [Oryza sativa Japonica Group]
Length = 379
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/156 (13%), Positives = 39/156 (25%), Gaps = 38/156 (24%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------ 43
++ +W K+ + + P + GD N I + +
Sbjct: 212 FQRRRKWDKRMLEFVQQVDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKEDCG 271
Query: 44 ----------------QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLI 87
+ +EK+ C Y FL+
Sbjct: 272 QPGFTLSERRRFGNILSQGKLVDAYRYLHKEKDMDCGFSWSGHPIGKYRGKRMRIDYFLV 331
Query: 88 DNSFSI--VSYDQSD--LDTRRSKLSTHCPLTIEYD 119
VS D ++ S HCP+++E
Sbjct: 332 SEKLKDQIVSCDIHGRGIELEGFYGSDHCPVSLELS 367
>gi|325479466|gb|EGC82562.1| endonuclease/exonuclease/phosphatase family protein [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 349
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 3/120 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ + G ++ GDFN+++ + + +P
Sbjct: 230 QIKQIFEFIQNEYDMGNYVIVGGDFNQELRENYKAERISEYWNPSDFPHEIFPNDFKLVY 289
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSF---SIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
N S L+ + ++ I + F + + ++ K S H P+T+++ +
Sbjct: 290 GDNVNSSRLNNTPYNPNDSYECIIDGFIVSKNIEVEDVKVEDLGFKNSDHNPVTMKFILK 349
>gi|320168591|gb|EFW45490.1| hypothetical protein CAOG_03474 [Capsaspora owczarzaki ATCC 30864]
Length = 397
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 36/138 (26%), Gaps = 22/138 (15%)
Query: 3 SQQGEWLKKW--ADQKIKTGIPFVIAGDFNRK-----------INSIGDT------DDFW 43
++ + L AD + + GDFN S +
Sbjct: 258 KREAQALVARNAADTILAGVDELIFLGDFNDYDGTVLDIAGSVPTSRTLEYLKTPINPST 317
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--SDL 101
+ + P E T K N + + L+ + +
Sbjct: 318 AHLALSNVASHVPLENRYTSWWDKDNSCVDEGGDEHTSIDHMLVSAGLAAGIQNVLFDHE 377
Query: 102 DTRRSK-LSTHCPLTIEY 118
+ +S H P+ +++
Sbjct: 378 FVACCQCVSDHWPVVVDF 395
>gi|298244699|ref|ZP_06968505.1| Endonuclease/exonuclease/phosphatase [Ktedonobacter racemifer DSM
44963]
gi|297552180|gb|EFH86045.1| Endonuclease/exonuclease/phosphatase [Ktedonobacter racemifer DSM
44963]
Length = 343
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 12/108 (11%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L ++ I+ G ++ GD N D + K S +
Sbjct: 240 QVKALHQFLQPFIQHGERLLMLGDMNTTDREPAYQD-----LSAGLQDTHLLVGKGSGHS 294
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
R L+ + + ++ D S HC
Sbjct: 295 WGIR---GLNQYWAFLRIDYMFVTPKVKPLNLDTDCTSRG----SDHC 335
>gi|255084355|ref|XP_002508752.1| predicted protein [Micromonas sp. RCC299]
gi|226524029|gb|ACO70010.1| predicted protein [Micromonas sp. RCC299]
Length = 288
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 34/139 (24%), Gaps = 26/139 (18%)
Query: 3 SQQGEWLKKWADQ-----------KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL 51
++ + L + + P V+AGD N + + ++K+
Sbjct: 151 RREAQALCA-MKEILTFKAMSGAGREDRLSPIVVAGDLNAQPHEPAVE--VFKKLGLMSC 207
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS----- 106
R + + R +S V YD +
Sbjct: 208 YARHIRAEPLFTTWKIRTGPYKPGE-AKMTIDYIFAQHSAFDV-YDVLAMPRSDEIGPKG 265
Query: 107 -----KLSTHCPLTIEYDF 120
S H L +F
Sbjct: 266 LPCRGHPSDHLMLKASLEF 284
>gi|223945403|gb|ACN26785.1| unknown [Zea mays]
Length = 339
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 32/129 (24%), Gaps = 14/129 (10%)
Query: 1 MLSQ--QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL------ 52
+LS+ Q E L K +IAGDFN +
Sbjct: 209 LLSRVSQFEQL---ISNKYNCKPSVIIAGDFNSTPGDKVYNYLLSANLGSTDEAPIKLRS 265
Query: 53 -IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQSDLDTRRSKLS 109
+ N +LDY + + S D S
Sbjct: 266 LYAANGGEPEYTNYTPGFTGTLDYIFLSDGSSIKPTSLLRLPRGDSEDVKGGLPNFRHPS 325
Query: 110 THCPLTIEY 118
H P+ ++
Sbjct: 326 DHLPIGADF 334
>gi|209738408|gb|ACI70073.1| Deoxyribonuclease gamma precursor [Salmo salar]
Length = 274
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 2/100 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GDFN + + ++ D ++ T + + +
Sbjct: 161 DNVMILGDFNADGSYLSKKGMKAIRIRSDKNFHWLIKDAVDTTANTGNDNTYDRIVIYGD 220
Query: 81 DNKNFLIDNSFSIVSYDQSD--LDTRRSKLSTHCPLTIEY 118
D + ++ NS ++ + + K+S H P+ +E
Sbjct: 221 DMLDAIVPNSAKPFNFQIAYGLSEEDALKVSDHYPVEVEL 260
>gi|149175039|ref|ZP_01853662.1| hypothetical protein PM8797T_25206 [Planctomyces maris DSM 8797]
gi|148846017|gb|EDL60357.1| hypothetical protein PM8797T_25206 [Planctomyces maris DSM 8797]
Length = 321
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/136 (11%), Positives = 31/136 (22%), Gaps = 20/136 (14%)
Query: 3 SQQGEWLKKWADQKIKT-GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR------F 55
+ L ++ + G P +IAGDF+ +S G +
Sbjct: 172 ERDAVALDRFIREISDPNGFPPIIAGDFDATPDSAGIRYLTGLQSLDGHSTHYYDAWKAA 231
Query: 56 PQEKESTCNVIKRNKS------SLDYFVIDRDNKNFLIDNSFSIVSY-------DQSDLD 102
+ + + R + + Y +
Sbjct: 232 GNRGAGPTWTTQNHYAKKTTEQFWHLSDHHRRIDYIFLGSPHHFRGYARVVSTRVVLNQP 291
Query: 103 TRRSKLSTHCPLTIEY 118
+ S H + E
Sbjct: 292 VGKDWPSDHFGVMAEI 307
>gi|332992625|gb|AEF02680.1| extracellular ribonuclease/nuclease fusion protein [Alteromonas sp.
SN2]
Length = 1340
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 28/120 (23%), Gaps = 20/120 (16%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GD N L+ + LD+ +
Sbjct: 1162 DRLLIMGDLNAYAAEEPILALESAGY---TNLVNTFGGDSAYSYTFGGELGYLDHALSSP 1218
Query: 81 DNKNFLIDNSFSIVSYD-----------------QSDLDTRRSKLSTHCPLTIEYDFEKG 123
+++D + ++ D + S H P+ + +F
Sbjct: 1219 SLTEYVVDATVWHINADEPRVFDYNEEYKTDAQITDYYGADAYRSSDHDPVLVVLNFPDA 1278
>gi|313125896|ref|YP_004036166.1| metal-dependent hydrolase [Halogeometricum borinquense DSM 11551]
gi|312292261|gb|ADQ66721.1| metal-dependent hydrolase [Halogeometricum borinquense DSM 11551]
Length = 283
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/112 (12%), Positives = 25/112 (22%), Gaps = 12/112 (10%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ + Q P ++AGD N +S D + E
Sbjct: 180 AKLARDRLAQL---DGPVILAGDCNATPDSDPYEAVTEAFADARHVAKHGHHGPEK---- 232
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ +S +D S H P+ +
Sbjct: 233 ----TMHHFTGDPTERIDYVFVRECDVRLSATLADRTREG-YPSDHFPVVAD 279
>gi|163735903|ref|ZP_02143331.1| hypothetical protein RLO149_08056 [Roseobacter litoralis Och 149]
gi|161390839|gb|EDQ15180.1| hypothetical protein RLO149_08056 [Roseobacter litoralis Och 149]
Length = 263
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 16/116 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q + L + + G ++ GDFN + +S + F + +
Sbjct: 164 AEQAQRLLALSRHISEPGDLRIVCGDFNVEPHSETLEILGAAGLSELVTGRGFTSTRNT- 222
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
Y + LI ++ ++ ++ +S HCPL +
Sbjct: 223 -----------QYKKSGKFADYMLISDADAVQEFNVVYNPE----VSDHCPLVLTI 263
>gi|319406308|emb|CBI79945.1| exodeoxyribonuclease III [Bartonella sp. AR 15-3]
Length = 272
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 25/131 (19%), Gaps = 23/131 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIR-- 54
G+ ++ GD N G +
Sbjct: 139 IRSDQGDGLASLLLGDLNIAPLPEDVWSHKQLLKVVSHTPIETERLQALCCEGGWVDLMR 198
Query: 55 --FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLST 110
FP + R + R + + + S
Sbjct: 199 MKFPIPTKLYTWWSYRARDWAL-ADRGRRLDHIWSSPNLVPFVKELAIFREARGWPQASD 257
Query: 111 HCPLTIEYDFE 121
H P+ +DF
Sbjct: 258 HVPVQTLFDFS 268
>gi|146297840|ref|YP_001192431.1| endonuclease/exonuclease/phosphatase [Flavobacterium johnsoniae
UW101]
gi|146152258|gb|ABQ03112.1| Endonuclease/exonuclease/phosphatase [Flavobacterium johnsoniae
UW101]
Length = 1133
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 6/122 (4%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQE-KES 61
E LK D ++ GD+N + + + + E ++
Sbjct: 918 VEVLKDSLDTHY-GDSNIILLGDYNDDVKASVIAGQPSSYQSFVTDTNNYKALTLEISQA 976
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ LD+ I + + I+ S ++ +D+ + S H P+ ++ +
Sbjct: 977 GAYSFLSSGGFLDHITISNELFDQYINESIAVYDPR-NDIANYTTTTSDHGPVIARFNLK 1035
Query: 122 KG 123
+
Sbjct: 1036 QD 1037
>gi|221068931|ref|ZP_03545036.1| Endonuclease/exonuclease/phosphatase [Comamonas testosteroni KF-1]
gi|220713954|gb|EED69322.1| Endonuclease/exonuclease/phosphatase [Comamonas testosteroni KF-1]
Length = 254
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 18/117 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L+++ ++++ P V+AGDFN N I ++M L + + +
Sbjct: 156 RQIALLQRFIEREVPPNAPLVVAGDFNDWGNQI-------KRMLAGFGLFEYEETQGILT 208
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + LD+ + + + ++S H PL E+
Sbjct: 209 YPSRLPIAQLDHIYVR----------GLTPLGLQVPKG-RIWWRMSDHLPLIAEFKL 254
>gi|110636350|ref|YP_676558.1| endonuclease/exonuclease/phosphatase [Mesorhizobium sp. BNC1]
gi|110287334|gb|ABG65393.1| Endonuclease/exonuclease/phosphatase [Chelativorans sp. BNC1]
Length = 265
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 24/121 (19%), Gaps = 24/121 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L P V+ GD N D W L FP
Sbjct: 152 RHQAQLLADLVR---SGSAPTVLMGDLN---------DWVWSGSVQTLLNRLFPGHTHFK 199
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
F + S H P+ E E+
Sbjct: 200 TFP---------AFWPVFALDRIYCRPGGMLARQWTDPQAR---TASDHLPVIAELRMEE 247
Query: 123 G 123
G
Sbjct: 248 G 248
>gi|330821279|ref|YP_004350141.1| endonuclease/exonuclease/phosphatase [Burkholderia gladioli BSR3]
gi|327373274|gb|AEA64629.1| endonuclease/exonuclease/phosphatase [Burkholderia gladioli BSR3]
Length = 645
Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 29/136 (21%), Gaps = 22/136 (16%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + W G ++ GD N + L +
Sbjct: 464 RAAGLVADWLAGNPTGVNGAGVLLIGDMNSYAKEDPIALFEARGYVN---LAARFIGAGA 520
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-----------------LDTR 104
V LD+ + + ++ D+
Sbjct: 521 YSYVFGGETGYLDHALASASLLPRVKAVHEWHINADEPVVLQYTLAYKSAEQQNSFYAPD 580
Query: 105 RSKLSTHCPLTIEYDF 120
+ S H P+ ++
Sbjct: 581 AYRSSDHDPVLVDLAM 596
>gi|291515850|emb|CBK65060.1| Metal-dependent hydrolase [Alistipes shahii WAL 8301]
Length = 313
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 5/122 (4%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ + L + + I P GDFN + D +K +
Sbjct: 195 AESAKLLIEKVAE-IAGKTPAFCTGDFNSNQQTNVYNTIVTSGTLVDSYAR--TTDKVNA 251
Query: 63 CNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIV-SYDQSDLDTRRSKLSTHCPLTIEYDF 120
K + + + V S+ + + S H P+ IE+ F
Sbjct: 252 DWPSYNGYKYISTPPAKASRIDHIFVTKGRTKVQSWAIVNTSYSQKYPSDHFPVVIEWSF 311
Query: 121 EK 122
K
Sbjct: 312 AK 313
>gi|227878040|ref|ZP_03996030.1| exodeoxyribonuclease III [Lactobacillus crispatus JV-V01]
gi|256843761|ref|ZP_05549248.1| exodeoxyribonuclease III [Lactobacillus crispatus 125-2-CHN]
gi|256849680|ref|ZP_05555112.1| exodeoxyribonuclease A [Lactobacillus crispatus MV-1A-US]
gi|262047734|ref|ZP_06020686.1| exodeoxyribonuclease III [Lactobacillus crispatus MV-3A-US]
gi|293381982|ref|ZP_06627943.1| exodeoxyribonuclease III [Lactobacillus crispatus 214-1]
gi|312977037|ref|ZP_07788786.1| exodeoxyribonuclease III [Lactobacillus crispatus CTV-05]
gi|227862358|gb|EEJ69887.1| exodeoxyribonuclease III [Lactobacillus crispatus JV-V01]
gi|256613666|gb|EEU18868.1| exodeoxyribonuclease III [Lactobacillus crispatus 125-2-CHN]
gi|256713796|gb|EEU28785.1| exodeoxyribonuclease A [Lactobacillus crispatus MV-1A-US]
gi|260571939|gb|EEX28507.1| exodeoxyribonuclease III [Lactobacillus crispatus MV-3A-US]
gi|290921438|gb|EFD98479.1| exodeoxyribonuclease III [Lactobacillus crispatus 214-1]
gi|310896365|gb|EFQ45430.1| exodeoxyribonuclease III [Lactobacillus crispatus CTV-05]
Length = 275
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 45/143 (31%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF-------------- 42
L + E W +K+ + QK+ P + +GD+N I
Sbjct: 136 LKRLAERQVWDQKYIEYLQKLDEKKPVLASGDYNCAHTEIDLKHPENNHHSAGFTDEERV 195
Query: 43 -WQKMDPDGLLIRFP----QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + G F + +R +++ +L+ N +
Sbjct: 196 DFTNLLNAGFTDTFRKVHGEITGVYSWWAQRVRTAKAN-NSGWRIDYWLVSNRIADKVVR 254
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+DT + HCP+ +E +
Sbjct: 255 SEMIDTGKRA--DHCPILLEINL 275
>gi|225456791|ref|XP_002277389.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|297733638|emb|CBI14885.3| unnamed protein product [Vitis vinifera]
Length = 357
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/141 (11%), Positives = 34/141 (24%), Gaps = 38/141 (26%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFW--------------------------------- 43
+ P + GD N I + +
Sbjct: 208 QSSDKPLIWCGDLNVSHEEIDVSHPEFFSAAKHNGYVPPNKEDCGQPGFTLAERRRFGGI 267
Query: 44 -QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSD 100
++ +EK+ Y F++ + IV+ +
Sbjct: 268 LKEGKLVDAYRLLHKEKDMEGGFSWSGNPIGKYRGKRMRIDYFIVPEALKDRIVACEIHG 327
Query: 101 L--DTRRSKLSTHCPLTIEYD 119
+ + S HCP+++E
Sbjct: 328 QGIELKGFYGSDHCPVSLELS 348
>gi|119897033|ref|YP_932246.1| hypothetical protein azo0742 [Azoarcus sp. BH72]
gi|119669446|emb|CAL93359.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 249
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 14/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L + ++ G P +IAGDFN N E
Sbjct: 144 RRQMEALAERMERLAPDGAPLIIAGDFNDWRNHAD----------SVLCRRLGLVEAFGA 193
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+V R S + + V + S++S H LT + +
Sbjct: 194 GSV--RPPRSFPSALPLFRLDRIYVRGF--QVRRAEVHYGEPWSRISDHAALTADLEL 247
>gi|264676938|ref|YP_003276844.1| endonuclease/exonuclease/phosphatase [Comamonas testosteroni CNB-2]
gi|299531500|ref|ZP_07044906.1| endonuclease/exonuclease/phosphatase [Comamonas testosteroni S44]
gi|262207450|gb|ACY31548.1| endonuclease/exonuclease/phosphatase [Comamonas testosteroni CNB-2]
gi|298720463|gb|EFI61414.1| endonuclease/exonuclease/phosphatase [Comamonas testosteroni S44]
Length = 254
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 18/117 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L+++ ++++ P V+AGDFN N I ++M L + + +
Sbjct: 156 RQIALLQRFIEREVPPNAPLVVAGDFNDWGNQI-------KRMLAGFGLFEYEETQGILT 208
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + LD+ + + + ++S H PL E+
Sbjct: 209 YPSRLPIAQLDHIYVR----------GLTPLGLQVPKG-RIWWRMSDHLPLIAEFKL 254
>gi|320334708|ref|YP_004171419.1| exodeoxyribonuclease III Xth [Deinococcus maricopensis DSM 21211]
gi|319755997|gb|ADV67754.1| exodeoxyribonuclease III Xth [Deinococcus maricopensis DSM 21211]
Length = 267
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 33/126 (26%), Gaps = 26/126 (20%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
W + + G P VI GD+N ++ + +
Sbjct: 138 HAWVESLLPLG-PLVIGGDYNVAHQNVDIRNWRGNLKNSGFLPHERAWMTQHLAAGLTDA 196
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E+ R + + + + ++ R +LS H
Sbjct: 197 HRARLGERAEYTWWSNRGNAYANDVGW--RIDYL-LTSGVALREVRVD----RSVRLSDH 249
Query: 112 CPLTIE 117
PLT E
Sbjct: 250 APLTGE 255
>gi|325285170|ref|YP_004260960.1| Endonuclease/exonuclease/phosphatase [Cellulophaga lytica DSM 7489]
gi|324320624|gb|ADY28089.1| Endonuclease/exonuclease/phosphatase [Cellulophaga lytica DSM 7489]
Length = 344
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 33/118 (27%), Gaps = 25/118 (21%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST-- 62
Q + +++ ++ GDFN S + F ++ +
Sbjct: 246 QAKIVQEHIK---GNPYKTIVCGDFNNNQYSNVYRTIKGDLL------DTFNEKGSAYGR 296
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
K +D+ + ++ +KLS H P+ ++
Sbjct: 297 TYNFKYYPVRIDFI--------------LASKEFEVIAHKNYDNKLSDHFPVMASFNL 340
>gi|326775772|ref|ZP_08235037.1| Endonuclease/exonuclease/phosphatase [Streptomyces cf. griseus
XylebKG-1]
gi|326656105|gb|EGE40951.1| Endonuclease/exonuclease/phosphatase [Streptomyces cf. griseus
XylebKG-1]
Length = 801
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 29/118 (24%), Gaps = 14/118 (11%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ + + +K V GDFN S + + P E+
Sbjct: 688 QQAAEVNTFVTAVLKADRSAKVVALGDFNDFEFSPTMKTLTRGRALKPLITTLPPSER-- 745
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEY 118
V N + + L YD + S H P +
Sbjct: 746 YSYVFDGN---------SQTLDHILTSPGVRRPDYDVVHINAEFADQASDHDPQVVRI 794
>gi|296118910|ref|ZP_06837483.1| 5'-nucleotidase family protein [Corynebacterium ammoniagenes DSM
20306]
gi|295968008|gb|EFG81260.1| 5'-nucleotidase family protein [Corynebacterium ammoniagenes DSM
20306]
Length = 901
Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 33/130 (25%), Gaps = 18/130 (13%)
Query: 5 QGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q E + ++ + GD N G I + +T
Sbjct: 689 QAEAVLDHLAKQSDWQDKATFVMGDLNSYTREHAI-----DTFRDAGYSIPQEDHQAATS 743
Query: 64 NVIKRNKSSLDYFV------------IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
SLD+ + + + + + D + S H
Sbjct: 744 YQFDGMLGSLDHVLANANVEVQDAQVWNINADESIAFEYSRRLYNVVDYHDDSPFRSSDH 803
Query: 112 CPLTIEYDFE 121
P+ + ++ +
Sbjct: 804 DPVKVGFNLD 813
>gi|270294111|ref|ZP_06200313.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270275578|gb|EFA21438.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 361
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 27/117 (23%), Gaps = 20/117 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + +A + P ++ GDFN +S L F
Sbjct: 265 QTYVISHYAKT---SPYPVLLCGDFNSIPSSYTYHH------LRKTLKDGFRTAGNGYMY 315
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
Y S + S H P+ +E + +
Sbjct: 316 TY-------RYAKRMLRIDYIFHSPSLK----GIAYYSPDLDLCSDHNPVIMEVEIQ 361
>gi|253751487|ref|YP_003024628.1| exodeoxyribonuclease [Streptococcus suis SC84]
gi|253753388|ref|YP_003026529.1| exodeoxyribonuclease [Streptococcus suis P1/7]
gi|253755783|ref|YP_003028923.1| exodeoxyribonuclease [Streptococcus suis BM407]
gi|251815776|emb|CAZ51378.1| exodeoxyribonuclease [Streptococcus suis SC84]
gi|251818247|emb|CAZ56055.1| exodeoxyribonuclease [Streptococcus suis BM407]
gi|251819634|emb|CAR45379.1| exodeoxyribonuclease [Streptococcus suis P1/7]
gi|292558119|gb|ADE31120.1| exodeoxyribonuclease III [Streptococcus suis GZ1]
gi|319757905|gb|ADV69847.1| exodeoxyribonuclease [Streptococcus suis JS14]
Length = 275
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF-------------- 42
L + + W ++AD K+ + P + GD+N I +
Sbjct: 136 LKRLADRQIWDVQYADYLAKLDSHKPVLATGDYNVAHKEIDLANPASNRQSPGFTDEERQ 195
Query: 43 -WQKMDPDGLLIRFPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + G F + +R+++S +L+ + +
Sbjct: 196 GFTNLLAKGFTDTFRHLHGDVLNAYTWWAQRSRTSKIN-NTGWRIDYWLVSDRIADKVSK 254
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+D+ + H P+ +E F
Sbjct: 255 SDMIDSGARQ--DHTPIVMEISF 275
>gi|145516224|ref|XP_001444006.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124411406|emb|CAK76609.1| unnamed protein product [Paramecium tetraurelia]
Length = 347
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 26/117 (22%), Gaps = 13/117 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---DDFWQKMDPDGLLIRFPQEKE 60
+ E +K+ Q ++ GD N S WQ +
Sbjct: 238 KSAEQIKRHIQQYCSPEDKIIVMGDLNSLPMSDAVKILTSPIWQGFTLQNTMGVLDMPLA 297
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP-LTI 116
+ + + + S + S H P + +
Sbjct: 298 TMHAWYG--------LKLGLHIDYIFL-GNLKYKSMMIVNDLIDGQYPSDHFPKVVV 345
>gi|239503516|ref|ZP_04662826.1| putative extracellular nuclease [Acinetobacter baumannii AB900]
Length = 812
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 39/145 (26%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +W + ++ GD N + Q ++
Sbjct: 635 KAVDQIVQWLAKNPTQVPKQNALLVGDMNSYAKEAPILAFEKANYKVLLNDAKVGQGTQA 694
Query: 62 TCNVIK--------RNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSD----- 100
V +LD+ + D D + + +++ Y++
Sbjct: 695 YSYVFGVASDANGNGGAGNLDHAIADADLYPKVVRTFAWHINADEPTVLDYNEEYKTDEQ 754
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D
Sbjct: 755 KALFYGEDAYRSSDHDPVIVDLDLN 779
>gi|226496457|ref|NP_001148811.1| LOC100282428 [Zea mays]
gi|195622288|gb|ACG32974.1| hydrolase [Zea mays]
Length = 397
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 32/129 (24%), Gaps = 14/129 (10%)
Query: 1 MLSQ--QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL------ 52
+LS+ Q E L K +IAGDFN +
Sbjct: 267 LLSRVSQFEQL---ISNKYNCKPSVIIAGDFNSTPGDKVYNYLLSANLGSTDEAPIKLRS 323
Query: 53 -IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQSDLDTRRSKLS 109
+ N +LDY + + S D S
Sbjct: 324 LYAANGGEPEYTNYTPGFTGTLDYIFLSDGSSIKPTSLLRLPRGDSEDVKGGLPNFRHPS 383
Query: 110 THCPLTIEY 118
H P+ ++
Sbjct: 384 DHLPIGADF 392
>gi|115402263|ref|XP_001217208.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114189054|gb|EAU30754.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 604
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 30/117 (25%), Gaps = 7/117 (5%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + + + + AGDFN + D + + E
Sbjct: 490 QAKVVGNFISEILSEDSSAKIITAGDFNEFAFARPLEVFSAVSGLQDLDDVAGVSKTERY 549
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N LD+ + I + + S H P +
Sbjct: 550 TYLYDANCQQLDHMYVSDAL-----TTEAQIEHIHVNTWVAYEEQASDHDPTVALLN 601
>gi|4678346|emb|CAB41156.1| putative protein [Arabidopsis thaliana]
Length = 686
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/151 (10%), Positives = 35/151 (23%), Gaps = 40/151 (26%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------------- 43
+ + ++ ++ + P + GD N I + +
Sbjct: 525 KRIVEFLNK--TSDKPLIWCGDLNVSHEEIDVSHPEFFATAKLNGYVPPNKEDCGQPGFT 582
Query: 44 -----------QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
++ +E+E Y FL+
Sbjct: 583 PSERGRFGATIKEGRLVDAYRYLHKEQEMESGFSWSGNPIGKYRGKRMRIDYFLVSEQLK 642
Query: 93 IVSYDQS----DLDTRRSKLSTHCPLTIEYD 119
++ S HCP+T+E
Sbjct: 643 DRIVSCKMHGRGIELEGFHGSDHCPVTLELS 673
>gi|323343527|ref|ZP_08083754.1| AP endonuclease domain protein [Prevotella oralis ATCC 33269]
gi|323095346|gb|EFZ37920.1| AP endonuclease domain protein [Prevotella oralis ATCC 33269]
Length = 361
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 23/116 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ + + + ++ GDFN S R + + C
Sbjct: 261 QVDAVAQYIYEHKR--MSMILCGDFNDGPLS---------------YTRRIMAKSLTDCY 303
Query: 65 VIKRNKSSL--DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
V N + + N + N + + R K S H P+
Sbjct: 304 VESGNGIGISYHHGGFYVRIDNIMCSNDWVPYGCKVDN----RVKSSDHYPIYCWL 355
>gi|242054697|ref|XP_002456494.1| hypothetical protein SORBIDRAFT_03g037250 [Sorghum bicolor]
gi|241928469|gb|EES01614.1| hypothetical protein SORBIDRAFT_03g037250 [Sorghum bicolor]
Length = 325
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 30/127 (23%), Gaps = 22/127 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ-----------------KMDPDGLLI 53
+ + +++ P ++AGD N SI + + +
Sbjct: 204 DFIKK-LESSKPVIVAGDLNCARESIDIHNPQAKTEAAGFTVEERESFEENFSSEGLIDT 262
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
Q + + FL S + LS H P
Sbjct: 263 FRKQHPNAVAYTFWGENQRITNKGW--RLDYFLASESIADK--VHDSYTLPDVSLSDHSP 318
Query: 114 LTIEYDF 120
+ +
Sbjct: 319 IGLVLKL 325
>gi|332559251|ref|ZP_08413573.1| endonuclease/exonuclease/phosphatase [Rhodobacter sphaeroides WS8N]
gi|332276963|gb|EGJ22278.1| endonuclease/exonuclease/phosphatase [Rhodobacter sphaeroides WS8N]
Length = 339
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/144 (11%), Positives = 40/144 (27%), Gaps = 28/144 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-----------------------TDD 41
+ WL++ + ++ GDFN +
Sbjct: 196 ECVWLRRRVAGLLARHQSVMVMGDFNDGPGLDEYEKLFGRSGIEIVLGLEEPPELRLHEP 255
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSY 96
+ + I+ + + ++ LD+ ++ D + + +
Sbjct: 256 HARMALTQKVGIQPSSARFWLAPEQQYFEALLDFIMVSADLAAKSPRWRIWHPLNDPNCF 315
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
+L S H P+T++ D
Sbjct: 316 RTPELQQALLAASDHFPVTLDIDL 339
>gi|160889855|ref|ZP_02070858.1| hypothetical protein BACUNI_02286 [Bacteroides uniformis ATCC 8492]
gi|156860847|gb|EDO54278.1| hypothetical protein BACUNI_02286 [Bacteroides uniformis ATCC 8492]
Length = 361
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 26/117 (22%), Gaps = 20/117 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + +A + P ++ GDFN +S L F
Sbjct: 265 QTYVISHYAKT---SPYPVLLCGDFNSIPSSYTYHH------LRKTLKDGFRTAGNGYMY 315
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
Y S S H P+ +E + +
Sbjct: 316 TY-------RYAKRMLRIDYIFHSPSLK----GIEYYSPDLDLCSDHNPVIMEVEIQ 361
>gi|126463202|ref|YP_001044316.1| endonuclease/exonuclease/phosphatase [Rhodobacter sphaeroides ATCC
17029]
gi|126104866|gb|ABN77544.1| Endonuclease/exonuclease/phosphatase [Rhodobacter sphaeroides ATCC
17029]
Length = 339
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/144 (11%), Positives = 40/144 (27%), Gaps = 28/144 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-----------------------TDD 41
+ WL++ + ++ GDFN +
Sbjct: 196 ECVWLRRRVAGLLARHQSVMVMGDFNDGPGLDEYEKLFGRSGIEIVLGLEEPPELRLHEP 255
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSY 96
+ + I+ + + ++ LD+ ++ D + + +
Sbjct: 256 HARMALTQKVGIQPSSARFWLAPEQQYFEALLDFIMVSADLAAKSPRWRIWHPLNDPNCF 315
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
+L S H P+T++ D
Sbjct: 316 RTPELQQALLAASDHFPVTLDIDL 339
>gi|307294159|ref|ZP_07574003.1| Endonuclease/exonuclease/phosphatase [Sphingobium chlorophenolicum
L-1]
gi|306880310|gb|EFN11527.1| Endonuclease/exonuclease/phosphatase [Sphingobium chlorophenolicum
L-1]
Length = 244
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 27/118 (22%), Gaps = 21/118 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + +P V+ GD N G DF + F +
Sbjct: 147 RKQAAAVIH--AASSRDAMPTVLMGDLNEWSAERGCLADFARHYSFAPCGRSFHARRP-- 202
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +V + S H P+ E+
Sbjct: 203 ----------------VARLDRIMHCGQLKLVDCGVH-ESAAARRASDHLPIWAEFKL 243
>gi|56477773|ref|YP_159362.1| endonuclease / exonuclease / phosphatase family protein
[Aromatoleum aromaticum EbN1]
gi|56313816|emb|CAI08461.1| predicted endonuclease / exonuclease / phosphatase family protein
[Aromatoleum aromaticum EbN1]
Length = 250
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 14/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L + +Q G P +IAGDFN N +++ R E
Sbjct: 145 RRQMGALAERMEQVAPGGAPLIIAGDFNDWRNRAA--QLLGRRLGLREAFDRGRGEPA-- 200
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R+ S + + V S++S H LT E +F
Sbjct: 201 -----RSFPSTVPVLCLDRIYVRGFRVRQAQVHCG-----LPWSRISDHAALTAELEF 248
>gi|121999171|ref|YP_001003958.1| endonuclease/exonuclease/phosphatase [Halorhodospira halophila SL1]
gi|121590576|gb|ABM63156.1| Endonuclease/exonuclease/phosphatase [Halorhodospira halophila SL1]
Length = 277
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 13/113 (11%), Positives = 28/113 (24%), Gaps = 21/113 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + ++ GD N + +S + R K
Sbjct: 180 DFLAELVNAHRHIIVMGDLNCQADSPEL-------LRLGRRTDLSEPIHGLHTFPSWRPK 232
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++D+ +I LS H P+ +E +
Sbjct: 233 HNIDHILISSTL--------------QVQRARVLEHALSDHLPIAMELALPEA 271
>gi|317478865|ref|ZP_07938015.1| endonuclease/Exonuclease/phosphatase [Bacteroides sp. 4_1_36]
gi|316904947|gb|EFV26751.1| endonuclease/Exonuclease/phosphatase [Bacteroides sp. 4_1_36]
Length = 361
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 26/117 (22%), Gaps = 20/117 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + +A + P ++ GDFN +S L F
Sbjct: 265 QTYVISHYAKT---SPYPVLLCGDFNSIPSSYTYHH------LRKTLKDGFRTAGNGYMY 315
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
Y S S H P+ +E + +
Sbjct: 316 TY-------RYAKRMLRIDYIFHSPSLK----GIEYYSPDLDLCSDHNPVIMEVEIQ 361
>gi|288928392|ref|ZP_06422239.1| endonuclease/Exonuclease/phosphatase [Prevotella sp. oral taxon 317
str. F0108]
gi|288331226|gb|EFC69810.1| endonuclease/Exonuclease/phosphatase [Prevotella sp. oral taxon 317
str. F0108]
Length = 321
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 11/118 (9%), Positives = 30/118 (25%), Gaps = 15/118 (12%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++ V+ GDFN ++ + + + SLD
Sbjct: 196 RQGNPTANIVVTGDFNDYGDAPALRLLAANGLTDVSANAIGINGAK-GTYRYQGEWGSLD 254
Query: 75 YFVIDRDNKNFLIDNSFSIVSY-DQSDLDTRRSKL-------------STHCPLTIEY 118
+ + + + + + + + S H P+ + +
Sbjct: 255 HVFVSQKIHEKGVSCHIFDAPFLMEDEEKYGGKRPWRTYQGPKYLGGFSDHLPVVVTF 312
>gi|149922986|ref|ZP_01911405.1| endonuclease/exonuclease/phosphatase family protein [Plesiocystis
pacifica SIR-1]
gi|149816172|gb|EDM75681.1| endonuclease/exonuclease/phosphatase family protein [Plesiocystis
pacifica SIR-1]
Length = 236
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 19/118 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L Q+ G P ++AGD N G T + ++ + P
Sbjct: 135 RRQVRELAALIRQR---GRPVIVAGDLNSDWREGGATRLLARDLELEAFEPTGPMVTFPG 191
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
LI + ++ S ++ +LS H PL
Sbjct: 192 PGPSPDR-----------RLDWVLISKA-----FEFSGVEAVDLRLSDHRPLLARVRL 233
>gi|118579337|ref|YP_900587.1| endonuclease/exonuclease/phosphatase [Pelobacter propionicus DSM
2379]
gi|118502047|gb|ABK98529.1| Endonuclease/exonuclease/phosphatase [Pelobacter propionicus DSM
2379]
Length = 354
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 10/116 (8%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q ++++ Q+ P +I GD N S +
Sbjct: 246 QARMVQEFISQEKG---PVIIGGDLNSPDASQVCAGLRDAGLHDAFAEGGRGYGYTYGHF 302
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+++R + + + ++ + F + T + S H P+ + F
Sbjct: 303 LLQRRLPWMRVSWM--RIDHVMMSSHFKALGC-----RTGTGEASDHRPVIADLLF 351
>gi|223932412|ref|ZP_03624414.1| exodeoxyribonuclease III Xth [Streptococcus suis 89/1591]
gi|330832647|ref|YP_004401472.1| exodeoxyribonuclease [Streptococcus suis ST3]
gi|223898866|gb|EEF65225.1| exodeoxyribonuclease III Xth [Streptococcus suis 89/1591]
gi|329306870|gb|AEB81286.1| exodeoxyribonuclease [Streptococcus suis ST3]
Length = 275
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF-------------- 42
L + + W ++AD K+ + P + GD+N I +
Sbjct: 136 LKRLADRQIWDVQYADYLAKLDSHKPVLATGDYNVAHKEIDLANPASNRQSPGFTDEERQ 195
Query: 43 -WQKMDPDGLLIRFPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + G F + +R+++S +L+ + +
Sbjct: 196 GFTNLLAKGFTDTFRHLHGDVLNAYTWWAQRSRTSKIN-NTGWRIDYWLVSDRIADKVSK 254
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+D+ + H P+ +E F
Sbjct: 255 SDMIDSGARQ--DHTPIVMEISF 275
>gi|197116747|ref|YP_002137174.1| endonuclease/exonuclease/phosphatase family protein [Geobacter
bemidjiensis Bem]
gi|197086107|gb|ACH37378.1| endonuclease/exonuclease/phosphatase family protein [Geobacter
bemidjiensis Bem]
Length = 343
Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 34/122 (27%), Gaps = 16/122 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ P ++AGD N D+ + + GL F E
Sbjct: 234 QARTVAGYLSREKG---PVLVAGDLN-----SPDSSLVCRTLREAGLADAFAAAGEGYGY 285
Query: 65 VIKRN---KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
V + + ++ + + S H P+ ++ +
Sbjct: 286 TYGHFLLKNRIPLLRVSWMRIDHVMTNSWLTASRCRVGT-----GRASDHRPVIADFLLK 340
Query: 122 KG 123
Sbjct: 341 NS 342
>gi|322373807|ref|ZP_08048342.1| RgfB protein [Streptococcus sp. C150]
gi|321277179|gb|EFX54249.1| RgfB protein [Streptococcus sp. C150]
Length = 270
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 29/111 (26%), Gaps = 3/111 (2%)
Query: 11 KWADQKIKT-GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+++ K G P ++AGDFN G + + S V
Sbjct: 162 ARIEERFKAIGKPLILAGDFNNPAGQEGYQAILASPLHLQDSFEVAKETTGSYT-VGPGI 220
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+++ + +S H L E +F
Sbjct: 221 DGWKGNE-EPLRIDYVFASQDWTVNRLSVIFDGNNQPLVSDHYGLEAELEF 270
>gi|307702382|ref|ZP_07639339.1| exodeoxyribonuclease [Streptococcus oralis ATCC 35037]
gi|307624059|gb|EFO03039.1| exodeoxyribonuclease [Streptococcus oralis ATCC 35037]
Length = 219
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
++ Q + P + GD+N I + + + G
Sbjct: 94 AEYLAQ-LDKEKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTNLLATGFTDT 152
Query: 55 FPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +R+K+S +L N + +D+ +
Sbjct: 153 FRHLHGDVPECYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--D 209
Query: 111 HCPLTIEYDF 120
H P+ +E +
Sbjct: 210 HTPIVLEIEL 219
>gi|302670430|ref|YP_003830390.1| endonuclease/exonuclease/phosphatase family protein [Butyrivibrio
proteoclasticus B316]
gi|302394903|gb|ADL33808.1| endonuclease/exonuclease/phosphatase family protein [Butyrivibrio
proteoclasticus B316]
Length = 362
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 41/133 (30%), Gaps = 17/133 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-TDDFWQKMDPDGLLIRFPQEKESTC 63
Q LK+ D ++ G ++AGDFN+ ++I + G++ +
Sbjct: 233 QTNMLKELMDNEVAKGNYIIVAGDFNQTFSNIDLSKYPVLEGKWEAGIINTEDFSSTFSF 292
Query: 64 NVIKRNKSSL-------------DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ ++ ++ + + + K S
Sbjct: 293 LYDDTYPTCRSLDRVLIDAEDKSPESFQYYMLDGCIVSDNIQVNHVETINT---EFKCSD 349
Query: 111 HCPLTIEYDFEKG 123
H P+ +++ +
Sbjct: 350 HNPVVVKFVLKSE 362
>gi|157279947|ref|NP_001098489.1| deoxyribonuclease-1-like 2 [Bos taurus]
gi|148743928|gb|AAI42237.1| DNASE1L2 protein [Bos taurus]
gi|296473523|gb|DAA15638.1| deoxyribonuclease I-like 2 [Bos taurus]
Length = 278
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 13/100 (13%), Positives = 32/100 (32%), Gaps = 3/100 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+ GDFN + + D ++ + + + V + + V
Sbjct: 177 DDILFLGDFNADCKYVREQDWPAIRLRSSEVFKWLIPDS-ADTTVGNSDCAYDRIVVCGS 235
Query: 81 DNKNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPLTIEY 118
+ L S ++ + + T+ +S H P+ +
Sbjct: 236 RLRKSLKHQSATVHDFQEEFGLDQTQALAISDHFPVEVTL 275
>gi|29501198|dbj|BAC67542.1| DNA lyase [Isaria tenuipes]
Length = 607
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/156 (8%), Positives = 32/156 (20%), Gaps = 43/156 (27%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFW 43
+Q E L+ + G ++ GD N + + ++
Sbjct: 161 RQSFVEALEARIRNLVAAGKQVILTGDLNIIRSEMDSSNVAEGLKKEGMTMEEWQSMPTR 220
Query: 44 QKMDP--------------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ ++ + F + K + +
Sbjct: 221 RILNQLLFDGSVIGPRDKAREDGVLWDICRCFHPTRRGMHTC-WDTKRNTRPANLGSRID 279
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S HCP+
Sbjct: 280 YILCSDGIKDW--FVDSNIQEGLMGSDHCPVYATMR 313
>gi|319954984|ref|YP_004166251.1| endonuclease i [Cellulophaga algicola DSM 14237]
gi|319423644|gb|ADV50753.1| Endonuclease I [Cellulophaga algicola DSM 14237]
Length = 1976
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 14/126 (11%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNR---------KINSIGDTDDFWQKMDPDGLLIRFP 56
E LK D + ++ GD+N +++ D + Q +L +
Sbjct: 1567 VEVLKDTLDAQFA-DSNLIVLGDYNDDVAFTVADEVSSTVSTFDAYVQDTVNYTILTKVL 1625
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
E + V + N + S YD T +S H P++
Sbjct: 1626 SEGDYRSYVFRENMIDHITVSNELSASYIDGSVSVGYEFYDTDYTTT----VSDHFPVSA 1681
Query: 117 EYDFEK 122
+ E+
Sbjct: 1682 RFILEE 1687
>gi|257876222|ref|ZP_05655875.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257810388|gb|EEV39208.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 257
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 35/123 (28%), Gaps = 14/123 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L Q + ++++ P ++ GD N + + + +
Sbjct: 147 ILEQLADQIERY---------PVLLMGDLNAEPTERVHRYLEQHFQNAKEHGQKPHHGPK 197
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+N + + F++V R S H PL E F
Sbjct: 198 G----SYQNFIYTLPWQELEEIDYIY-TKGFTVVKTACLTDSCDRRFPSDHFPLEAEVQF 252
Query: 121 EKG 123
E+
Sbjct: 253 EES 255
>gi|241950641|ref|XP_002418043.1| endonuclease/exonuclease/phosphatase, putative [Candida
dubliniensis CD36]
gi|223641382|emb|CAX43342.1| endonuclease/exonuclease/phosphatase, putative [Candida
dubliniensis CD36]
Length = 303
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 28/115 (24%), Gaps = 2/115 (1%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ + ++ I P + GDFN M + +
Sbjct: 188 SAKLIIQYIKS-IPNYFPTFLCGDFNSLDTDKA-YATISHYMVDASHVAEKKYDTNLKTF 245
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N +S I ++ +L + S H P+ Y
Sbjct: 246 SGFGNGTSYSIDFIWSPLDTNNHSGINALFYTVLDNLFDGGYRFSDHRPIMARYS 300
>gi|83647712|ref|YP_436147.1| endonuclease/exonuclease/phophatase family protein [Hahella
chejuensis KCTC 2396]
gi|83635755|gb|ABC31722.1| endonuclease/exonuclease/phophatase family protein [Hahella
chejuensis KCTC 2396]
Length = 445
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 14/128 (10%)
Query: 8 WLKKWADQKI---------KTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQ 57
L++W Q+ P +IAGD N +N + D +D +
Sbjct: 311 ALRRWHLQQYKAFVDSKGAAADEPVIIAGDLNVDKLNFPAEHQDMLAILDASEPPSQSQY 370
Query: 58 EKEST----CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ LDY + + + ++ + LS H P
Sbjct: 371 PHSYDGGVNTFADSQLTEYLDYVLTSNSHVAPVYSHNRVRIPRFIQWEHWTSWDLSDHFP 430
Query: 114 LTIEYDFE 121
+ E+ F
Sbjct: 431 VEGEFVFP 438
>gi|171682868|ref|XP_001906377.1| hypothetical protein [Podospora anserina S mat+]
gi|170941393|emb|CAP67043.1| unnamed protein product [Podospora anserina S mat+]
Length = 619
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 5/118 (4%)
Query: 5 QGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + Q + + AGDFN D + + E
Sbjct: 503 QANVTATFISQILNADPKAAVISAGDFNEFSFVRPMKTFAEISKMKDLDEVAGIKPTERY 562
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
N +LD+ + + I + + +S H P +D
Sbjct: 563 TYAFDMNAQALDHMYVSPSLAASSKSDFEHIH---VNTWGSYAEMVSDHDPSVALFDL 617
>gi|288928983|ref|ZP_06422829.1| AP endonuclease domain protein [Prevotella sp. oral taxon 317 str.
F0108]
gi|288329967|gb|EFC68552.1| AP endonuclease domain protein [Prevotella sp. oral taxon 317 str.
F0108]
Length = 362
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 12/111 (10%), Positives = 33/111 (29%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ ++ G ++ GDFN S +++ + +
Sbjct: 263 QVQCVAQFVRKR--KGQSIILCGDFNDSPISYA-HRCMAKELTDCYV------ASGNGPG 313
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + N + + + + + K S H P+
Sbjct: 314 ISYHRNAFY------VRIDNIMCSDDWQPLKCVV----ENKVKTSDHYPIF 354
>gi|282866534|ref|ZP_06275577.1| Endonuclease/exonuclease/phosphatase [Streptomyces sp. ACTE]
gi|282558581|gb|EFB64140.1| Endonuclease/exonuclease/phosphatase [Streptomyces sp. ACTE]
Length = 322
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 31/128 (24%), Gaps = 19/128 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q ++ + Q+ P V+ GDFNR + L+ Q +
Sbjct: 199 EQITGVRDFVRQE---DRPTVLTGDFNRNSGAAQLK-PLASAFTECPGLLGTGQGTSTYH 254
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFS--IVSYDQSDLD-------TRRSKL---STH 111
+ + D+ + + S H
Sbjct: 255 QW---MPAEGTHSFHTLDHVFVSKASEVRAPFARCGVDRDRMDTTPNEAGGVEPDGYSDH 311
Query: 112 CPLTIEYD 119
P+ +
Sbjct: 312 APVFADIR 319
>gi|62858061|ref|NP_001016531.1| CCR4 carbon catabolite repression 4-like [Xenopus (Silurana)
tropicalis]
gi|89267365|emb|CAJ82796.1| CCR4 carbon catabolite repression 4-like (S. cerevisiae) [Xenopus
(Silurana) tropicalis]
gi|213627135|gb|AAI70786.1| CCR4 carbon catabolite repression 4-like (S. cerevisiae) [Xenopus
(Silurana) tropicalis]
Length = 458
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 34/129 (26%), Gaps = 7/129 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE--- 58
L+Q + L +P +I GDFN + ++ + ++
Sbjct: 325 LAQGSDLLHNLESITEGATVPLIICGDFNAEPTEEVYKRFASSSLNLNSAYKLLSEDGES 384
Query: 59 KESTCNVIKRNKSS----LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ R LDY + + + S H L
Sbjct: 385 EPPYTTWKIRPTGESCHTLDYIWYSQHALRVNSALGLPTEEQIGPNRLPSFNYPSDHLSL 444
Query: 115 TIEYDFEKG 123
++ F +
Sbjct: 445 VCDFSFNED 453
>gi|297846518|ref|XP_002891140.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297336982|gb|EFH67399.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 419
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 39/137 (28%), Gaps = 15/137 (10%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------- 49
+LS+ + K + + ++AGDFN + P
Sbjct: 284 LLSRLAQ-FKTLISDEFECTPSLLLAGDFNSIPGDMVYNYLVSGNAKPAETTEEEEAPVP 342
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDLDTRRS 106
+ + + N ++LDY I + + S D
Sbjct: 343 LSSVYEVTRGEPKFTNCTPGFTNTLDYIFISPSDFIKPVSILQLPEPDSPDIVGFLPNHH 402
Query: 107 KLSTHCPLTIEYDFEKG 123
S H P+ E++ +
Sbjct: 403 HPSDHLPIGAEFEIRRE 419
>gi|156344739|ref|XP_001621294.1| hypothetical protein NEMVEDRAFT_v1g222142 [Nematostella vectensis]
gi|156207077|gb|EDO29194.1| predicted protein [Nematostella vectensis]
Length = 131
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 4/117 (3%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+ K+ QK IP ++ GDFN + F + + + R
Sbjct: 16 IDKFLKQKELHSIPVILTGDFNS-PETNPVYQ-FVKGSGFASSYKVVNGREAGVTHKDHR 73
Query: 69 NKSSL-DYFVIDRDNKNFLIDNSFSIVSYDQSDLDT-RRSKLSTHCPLTIEYDFEKG 123
+ DY + S ++ +D +S H + E+D K
Sbjct: 74 GRELSVDYIFYRNSGSCAISPKSSIMLPQQYNDQVWPEEFTISDHRMIVTEFDMGKS 130
>gi|71275880|ref|ZP_00652163.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Xylella
fastidiosa Dixon]
gi|71901393|ref|ZP_00683486.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Xylella
fastidiosa Ann-1]
gi|170729372|ref|YP_001774805.1| DNA-(apurinic or apyrimidinic site) lyase [Xylella fastidiosa M12]
gi|71163257|gb|EAO12976.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Xylella
fastidiosa Dixon]
gi|71728852|gb|EAO30990.1| AP endonuclease, family 1:Exodeoxyribonuclease III xth [Xylella
fastidiosa Ann-1]
gi|167964165|gb|ACA11175.1| DNA-(apurinic or apyrimidinic site) lyase [Xylella fastidiosa M12]
Length = 266
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 36/144 (25%), Gaps = 33/144 (22%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------- 49
WL+ + + +G +V+ GD+N +++ + + +
Sbjct: 127 MRWLRPILCEWLLSGRDYVLCGDWNIVRSALDIRNWKSNQKNSGCLPLERDWLNGLCADS 186
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ E R + ++ +
Sbjct: 187 LHDVNSAQGRGWVDTYRVLHPQGEDYTWWSNRGAARVNNVGW--RIDYQFVSPGLRERVS 244
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
+ + S H P T+EY
Sbjct: 245 RCAIYC--EQRFSDHSPYTVEYVL 266
>gi|326511341|dbj|BAJ87684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/156 (10%), Positives = 36/156 (23%), Gaps = 38/156 (24%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------ 43
++ +W K+ + + P + GD N I + +
Sbjct: 138 FQRRRKWDKRMLEFVQQVDKPLIWCGDLNVSHGEIDVSHPDFFSDAKLNGYIPPNKEDCG 197
Query: 44 ----------------QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLI 87
+ +EK+ C Y F++
Sbjct: 198 QPGFTLAERQRFGNILSQGKLVDAYRYLHKEKDMECGFSWSGNPIGKYRGKRMRIDYFVV 257
Query: 88 DNSFSIVSYDQ----SDLDTRRSKLSTHCPLTIEYD 119
++ S HCP+++E
Sbjct: 258 SEGLKDRIVSCEMHGHGIELEGFYGSDHCPVSLELS 293
>gi|312076146|ref|XP_003140730.1| hypothetical protein LOAG_05145 [Loa loa]
gi|307764104|gb|EFO23338.1| hypothetical protein LOAG_05145 [Loa loa]
Length = 415
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 11/129 (8%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP-------- 56
Q L ++ + ++AGDFN + +++ D + +
Sbjct: 155 QAFELAQFVKHTSYSADALILAGDFNIEPDNLAYQLIVQNANLRDAWIQKPNSCDDCGAT 214
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL---STHCP 113
+ C +R K+ +Y + + + K S H
Sbjct: 215 FGRLDNCYTPQRFKNKKNYGKRLDYIMYRSGRSKIELKLCEIRMNRIHDQKSINYSDHVG 274
Query: 114 LTIEYDFEK 122
+ E+ +
Sbjct: 275 VYAEFSLSE 283
>gi|297674359|ref|XP_002815200.1| PREDICTED: nocturnin-like [Pongo abelii]
Length = 431
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 38/125 (30%), Gaps = 7/125 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 302 CDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPPY 361
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEY 118
R + + + ++ +++ +Q + S S H L ++
Sbjct: 362 TTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDF 421
Query: 119 DFEKG 123
F +
Sbjct: 422 SFTEE 426
>gi|291515920|emb|CBK65130.1| Metal-dependent hydrolase [Alistipes shahii WAL 8301]
Length = 293
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 14/117 (11%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q +++ D ++ ++AGD N +S + G +
Sbjct: 181 QANEIRRIRDTELDGD--LILAGDLNAIPSSNVI-ATMTAFLTNVGTID-------QYTF 230
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ +DY + + + + S D S H P+ + F+
Sbjct: 231 PSENPTRKIDYILYAPIGHFGVQNCTVVSRS----DQQVDGVDASDHRPVVADIRFQ 283
>gi|301792507|ref|XP_002931219.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Ailuropoda melanoleuca]
gi|281349729|gb|EFB25313.1| hypothetical protein PANDA_022064 [Ailuropoda melanoleuca]
Length = 516
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 29/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLL 52
L+ A+ + G +I GD N I D + G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLLSNLGCQ 235
Query: 53 IRFPQEKESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
S + L D + I ++ Q
Sbjct: 236 AGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVLGDRTLVIDTF-QDSF 294
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 295 RLPEVMGSDHCPVGAVLS 312
>gi|83648975|ref|YP_437410.1| exonuclease III [Hahella chejuensis KCTC 2396]
gi|83637018|gb|ABC32985.1| Exonuclease III [Hahella chejuensis KCTC 2396]
Length = 257
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 37/143 (25%), Gaps = 28/143 (19%)
Query: 3 SQQG-----EWLKKWADQKIKTGIPFVIAGDFNRK-------------------INSIGD 38
QQ E + ++ F+ G+F
Sbjct: 118 KQQAKEEYLEAFGNHLQKTLRKRRQFIFCGNFQTAHLVTDANPRYHRLEVSGFLPQERAW 177
Query: 39 TDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
D + +M + +EK + + + D + +I
Sbjct: 178 FDQVFDEMQYVDAFRKINREKNQYTWWPESAEGWRKHSGWRVDYQIATQGLRSAIKRAWI 237
Query: 99 SDLDTRRSKLSTHCPLTIEYDFE 121
++ S H PL ++YD +
Sbjct: 238 DTE----TRFSDHAPLIVDYDVD 256
>gi|332820251|ref|XP_003310517.1| PREDICTED: nocturnin [Pan troglodytes]
Length = 365
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 38/125 (30%), Gaps = 7/125 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 236 CDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPPY 295
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEY 118
R + + + ++ +++ +Q + S S H L ++
Sbjct: 296 TTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDF 355
Query: 119 DFEKG 123
F +
Sbjct: 356 SFTEE 360
>gi|325300418|ref|YP_004260335.1| Endonuclease/exonuclease/phosphatase [Bacteroides salanitronis DSM
18170]
gi|324319971|gb|ADY37862.1| Endonuclease/exonuclease/phosphatase [Bacteroides salanitronis DSM
18170]
Length = 283
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 27/119 (22%), Gaps = 4/119 (3%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++G L ++I P V+ GDFN S ++
Sbjct: 168 RREGALLIIRKIKEIVGDRPAVLTGDFNVNDQSEAYRTITSNAFVLKDAAKIAGKQTGVD 227
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-LSTHCPLTIEYDF 120
+ ++ SK LS H P +
Sbjct: 228 -YTFHNFG--QIPSEQCEKIDFIFVTPQIKVLDSFIPKEAAPGSKFLSDHNPQIVHLIL 283
>gi|297293391|ref|XP_002804251.1| PREDICTED: nocturnin-like [Macaca mulatta]
Length = 431
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 38/125 (30%), Gaps = 7/125 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 302 CDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPPY 361
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEY 118
R + + + ++ +++ +Q + S S H L ++
Sbjct: 362 TTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDF 421
Query: 119 DFEKG 123
F +
Sbjct: 422 SFTEE 426
>gi|226955352|gb|ACO95347.1| DNase X (predicted) [Dasypus novemcinctus]
Length = 305
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 31/104 (29%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
++ G ++ GDFN S+ + ++E T + +
Sbjct: 170 QLWPGEDVILLGDFNADCASLTKKRLGELALRTQEGFHWVIGDREDTTVRSSTHCAYDRI 229
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + + +S H P+ +E +
Sbjct: 230 VLYGERCPSLVRAAGAFDFPGSFQLTEEQALAISDHYPVEVELN 273
>gi|119477271|ref|ZP_01617507.1| Endonuclease/exonuclease/phosphatase [marine gamma proteobacterium
HTCC2143]
gi|119449634|gb|EAW30872.1| Endonuclease/exonuclease/phosphatase [marine gamma proteobacterium
HTCC2143]
Length = 260
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 14/119 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L +++ P +IAGDFN S+ +
Sbjct: 155 KRQLVQLLDLVAERVPDAAPLIIAGDFNDWSGSLDRQIRHRIGVQDVYREA--------- 205
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ + + + + ++ + +LS HC L E+
Sbjct: 206 ----YGRRAKTFPAKFPVFSMDRIYYRNMELIDAEVLSGMP-WQQLSDHCALYAEFSIP 259
>gi|68536120|ref|YP_250825.1| putative extracellular nuclease [Corynebacterium jeikeium K411]
gi|68263719|emb|CAI37207.1| putative extracellular nuclease [Corynebacterium jeikeium K411]
Length = 931
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 34/127 (26%), Gaps = 20/127 (15%)
Query: 8 WLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
L KW + P I GDFN + ++ G +
Sbjct: 718 QLVKWLSEDADFKDKPQFILGDFNAYAKEDAI-----RIIEEAGYTNLETKFDAGHSYQF 772
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--------------QSDLDTRRSKLSTHC 112
SLD+ + ++ ++ D + + S H
Sbjct: 773 GGRVGSLDHVLANQKAAEMATGADVWDINADESVAFEYSRRNYNVVDFYEPNVFRASDHD 832
Query: 113 PLTIEYD 119
P+ + ++
Sbjct: 833 PIKVGFN 839
>gi|255024226|ref|ZP_05296212.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-208]
Length = 216
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 9/94 (9%), Positives = 22/94 (23%), Gaps = 20/94 (21%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + ++ + P V+ GD N I + + +
Sbjct: 124 DAILEYVK-NLDKTKPVVLCGDLNVAHEEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGF 182
Query: 50 -GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRD 81
F + ++ R + D
Sbjct: 183 IDSFRYFYPDLTDAYSWWSYRMNARARNTGWRID 216
>gi|222612692|gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
Length = 1594
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 15/108 (13%)
Query: 22 PFVIAGDFNRKINSIGDT----------DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+++AGDFN + S D+F + GL E ++ +
Sbjct: 425 PWLMAGDFNEILFSHEKQCGRMKAQSAMDEFRHALTDCGLDDLGF-EGDAFTWRNHSHSQ 483
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + S H P+ IE +
Sbjct: 484 EGYIREWLDRAVANPEWRAMFPAARVINGDP----RHSDHRPVIIELE 527
>gi|20279456|gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1509
Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 15/108 (13%)
Query: 22 PFVIAGDFNRKINSIGDT----------DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+++AGDFN + S D+F + GL E ++ +
Sbjct: 422 PWLMAGDFNEILFSHEKQCGRMKAQSAMDEFRHALTDCGLDDLGF-EGDAFTWRNHSHSQ 480
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + S H P+ IE +
Sbjct: 481 EGYIREWLDRAVANPEWRAMFPAARVINGDP----RHSDHRPVIIELE 524
>gi|225707660|gb|ACO09676.1| Deoxyribonuclease gamma precursor [Osmerus mordax]
Length = 268
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 2/106 (1%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++ +I GDFN + + + ++ D + T K + +
Sbjct: 155 KRKWGTDNIMILGDFNADGSYVSKKEMKLIRIRSDKNFHWLISDDVDTTANHKNDHTYDR 214
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
V D ++ NS ++ Q T L S H P+ +E
Sbjct: 215 IVVYGDDMLAAVVPNSAKPFNFQQEYGLTNAQTLDVSDHYPVEVEL 260
>gi|194698716|gb|ACF83442.1| unknown [Zea mays]
Length = 353
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 32/129 (24%), Gaps = 14/129 (10%)
Query: 1 MLSQ--QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL------ 52
+LS+ Q E L K +IAGDFN +
Sbjct: 223 LLSRVSQFEQL---ISNKYNCKPSVIIAGDFNSTPGDKVYNYLLSANLGSTDEAPIKLRS 279
Query: 53 -IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQSDLDTRRSKLS 109
+ N +LDY + + S D S
Sbjct: 280 LYAANGGEPEYTNYTPGFTGTLDYIFLSDGSSIKPTSLLRLPRGDSEDVKGGLPNFRHPS 339
Query: 110 THCPLTIEY 118
H P+ ++
Sbjct: 340 DHLPIGADF 348
>gi|322699478|gb|EFY91239.1| endonuclease/exonuclease/phosphatase family protein [Metarhizium
acridum CQMa 102]
Length = 605
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 7/118 (5%)
Query: 5 QGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q E + Q + + AGDFN + D E E
Sbjct: 491 QMELTANFIAQILARDPKARIITAGDFNEFTQVQPVATFASKSGLLDADEAAGLAEVERY 550
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +N +LD+ I + + + + S H P + +F
Sbjct: 551 TYLFDQNSEALDHMYISKGLARHAQVEHLHL-----NTWQNYDGQTSDHDPSVAKLNF 603
>gi|184185502|gb|ACC68905.1| DNase X (predicted) [Rhinolophus ferrumequinum]
Length = 314
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 12/101 (11%), Positives = 28/101 (27%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN S+ ++ + E T + + +
Sbjct: 182 QSKDVILLGDFNADCTSLTKKRLGELQLRTQAGFHWVIADGEDTTVRASTHCAYDRIVLH 241
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ L + + +S H P+ +E
Sbjct: 242 GERCQSLLHTAAPFNFPRIYGLTEEEALNISDHYPVEVELS 282
>gi|221640247|ref|YP_002526509.1| endonuclease/exonuclease/phosphatase [Rhodobacter sphaeroides
KD131]
gi|221161028|gb|ACM02008.1| Endonuclease/exonuclease/phosphatase [Rhodobacter sphaeroides
KD131]
Length = 339
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/144 (11%), Positives = 40/144 (27%), Gaps = 28/144 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-----------------------TDD 41
+ WL++ + ++ GDFN +
Sbjct: 196 ECVWLRRRVAGLLARHQSVMVMGDFNDGPGLDEYEKLFGRSGIEIVLGLEEPPELRLHEP 255
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN-----KNFLIDNSFSIVSY 96
+ + I+ + + ++ LD+ ++ D + + +
Sbjct: 256 HARMALTQKVGIQPSSARFWLAPEQQYFEALLDFIMVSADLAAKSPRWRIWHPLNDPNCF 315
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
+L S H P+T++ D
Sbjct: 316 RTPELQQALLAASDHFPVTLDIDL 339
>gi|23097966|ref|NP_691432.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
gi|22776190|dbj|BAC12467.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
Length = 269
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 32/132 (24%), Gaps = 24/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------ 48
+ L + QK+ P V GD N + I +D +
Sbjct: 124 DRLFDYL-QKLNKKKPLVYCGDLNVAHHEIDLRNDKTNHGNSGFTKEERSKMSRLLDAGF 182
Query: 49 -DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D L P+ + D ++ +
Sbjct: 183 VDTLRHFHPEADDIFTWWSYMKTIRERNIGWRIDYFIVSEQLIPALKKSEVHSSVLG--- 239
Query: 108 LSTHCPLTIEYD 119
S HCP+ + D
Sbjct: 240 -SDHCPIGLVID 250
>gi|262279680|ref|ZP_06057465.1| nuclease [Acinetobacter calcoaceticus RUH2202]
gi|262260031|gb|EEY78764.1| nuclease [Acinetobacter calcoaceticus RUH2202]
Length = 812
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 14/145 (9%), Positives = 38/145 (26%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +W + ++ GD N + Q ++
Sbjct: 635 KAVDQIVQWLAKNPTQVQKQNALLVGDMNSYAKEEPILSFEKANYKVLLNDAKIGQGTQA 694
Query: 62 TCNVIK--------RNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSD----- 100
V +LD+ + D + + +++ Y++
Sbjct: 695 YSYVYGVASDANGNGGAGNLDHAIADAALYPKVVRTFAWHINADEPTVLDYNEEYKTDEQ 754
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D
Sbjct: 755 KALFYGEDAYRSSDHDPVIVDLDLN 779
>gi|315282772|ref|ZP_07871102.1| exodeoxyribonuclease III [Listeria marthii FSL S4-120]
gi|313613576|gb|EFR87390.1| exodeoxyribonuclease III [Listeria marthii FSL S4-120]
Length = 108
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 12/112 (10%), Positives = 23/112 (20%), Gaps = 23/112 (20%)
Query: 28 DFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE-KESTCNVIKR 68
D N I + + + F + ++ R
Sbjct: 1 DLNVAHAEIDLKNPKTNRKNAGFSDEERAKFSAFLDAGFIDSFRYFYPDLTDAYSWWSYR 60
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ D +V S HCP+ +E +
Sbjct: 61 MNARARNTGWRIDYFVVSERLKDKLVDAKIH----ADVLGSDHCPVELELNL 108
>gi|68433741|ref|XP_700794.1| PREDICTED: nocturnin [Danio rerio]
Length = 432
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 25/115 (21%), Gaps = 11/115 (9%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
GIP ++ GDFN + N + D + ++ +
Sbjct: 314 QTEGIPLIVCGDFNAEPNEEVYRHFRSSSLGLDSVYKCLSDDRT--TEPPYTSWKIRPSG 371
Query: 77 VIDRDNKNFLIDNSFSIVSYDQ---------SDLDTRRSKLSTHCPLTIEYDFEK 122
V D S H L + F +
Sbjct: 372 ECCSTLDYIWYSEKAFEVDAVLRIPSEEQIGPDRLPSFHYPSDHLSLVCDLSFSQ 426
>gi|84685512|ref|ZP_01013410.1| hypothetical protein 1099457000258_RB2654_11603 [Maritimibacter
alkaliphilus HTCC2654]
gi|84666669|gb|EAQ13141.1| hypothetical protein RB2654_11603 [Rhodobacterales bacterium
HTCC2654]
Length = 266
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 28/114 (24%), Gaps = 16/114 (14%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + G V+ GDFN + S + +G T
Sbjct: 169 QARRFLGLLRAVAEPGDATVLCGDFNVEPGSE-----TLSYLADEGFDELVTGGGHPTTR 223
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K L+ +++ +S HCPL +
Sbjct: 224 TSHYPKPGRF-------ADYMLVGPDTRPAAFEVVRDPE----VSDHCPLVLTL 266
>gi|209521512|ref|ZP_03270215.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. H160]
gi|209498042|gb|EDZ98194.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. H160]
Length = 157
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 8/75 (10%), Positives = 17/75 (22%)
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
L ++ + + D+ + + +
Sbjct: 77 TDALRTRFGDERVYTFWDYFRRHWDTNSGLRIDHLLLSAELAPRLRDAGVDRWVRGEPHA 136
Query: 109 STHCPLTIEYDFEKG 123
S H P IE + G
Sbjct: 137 SDHAPTWIELEMGAG 151
>gi|227832356|ref|YP_002834063.1| putative exodeoxyribonuclease [Corynebacterium aurimucosum ATCC
700975]
gi|227453372|gb|ACP32125.1| putative exodeoxyribonuclease [Corynebacterium aurimucosum ATCC
700975]
Length = 302
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 11/88 (12%), Positives = 20/88 (22%)
Query: 31 RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS 90
+ + D P+ R ++ + D +
Sbjct: 214 VDYETKTAWEAAADPQWFDVARRLHPEADGPYTWWTYRGQAFNNDAGWRIDYQAATKAML 273
Query: 91 FSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
T + S H PL +EY
Sbjct: 274 ERAQRTWVEKAPTVEERWSDHSPLLVEY 301
>gi|325283015|ref|YP_004255556.1| exodeoxyribonuclease III Xth [Deinococcus proteolyticus MRP]
gi|324314824|gb|ADY25939.1| exodeoxyribonuclease III Xth [Deinococcus proteolyticus MRP]
Length = 264
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 31/128 (24%), Gaps = 26/128 (20%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLI 53
W D++ G P VI GD+N I + + +
Sbjct: 143 WTDRQRTQG-PLVIGGDYNIAHQPIDLKNWRSNQNNSGFLPHEREWMTAHLASGLSDSHR 201
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
E+ R ++ + D + +LS H P
Sbjct: 202 LHLGERAEYTWWSNRGQAYTNDTGWRIDYLL---TSQVQTADVWVDRPA----RLSDHAP 254
Query: 114 LTIEYDFE 121
LT
Sbjct: 255 LTARVILP 262
>gi|148230108|ref|NP_001079281.1| nocturnin [Xenopus laevis]
gi|6093516|sp|P79942|NOCT_XENLA RecName: Full=Nocturnin; AltName: Full=Rhythmic message 1;
Short=RM1
gi|1755150|gb|AAB39495.1| nocturnin [Xenopus laevis]
Length = 388
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 33/129 (25%), Gaps = 7/129 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE--- 58
L+Q + L +P +I GDFN ++ + ++
Sbjct: 255 LAQGSDLLDNLESITQGATVPLIICGDFNADPTEEVYKRFASSSLNLNSAYKLLSEDGES 314
Query: 59 KESTCNVIKRNKSS----LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ R LDY + + + S H L
Sbjct: 315 EPPYTTWKIRTTGESCHTLDYIWYSQHALRVNAALGLPTEEQIGPNRLPSFNYPSDHLSL 374
Query: 115 TIEYDFEKG 123
++ F +
Sbjct: 375 VCDFSFNED 383
>gi|260578815|ref|ZP_05846722.1| 5'-nucleotidase family protein [Corynebacterium jeikeium ATCC
43734]
gi|258603113|gb|EEW16383.1| 5'-nucleotidase family protein [Corynebacterium jeikeium ATCC
43734]
Length = 928
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 33/127 (25%), Gaps = 20/127 (15%)
Query: 8 WLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
L KW + P I GDFN + ++ G +
Sbjct: 715 QLVKWLSEDADFKDKPQFILGDFNAYAKEDAI-----RIIEEAGYTNLETKFDAGHSYQF 769
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--------------QSDLDTRRSKLSTHC 112
SLD+ + + ++ D + + S H
Sbjct: 770 GGRVGSLDHVLANEKATEMATGADVWDINADESVAFEYSRRNYNVVDFYEPNVFRASDHD 829
Query: 113 PLTIEYD 119
P+ + ++
Sbjct: 830 PIKVGFN 836
>gi|110288963|gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1505
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 15/108 (13%)
Query: 22 PFVIAGDFNRKINSIGDT----------DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+++AGDFN + S D+F + GL E ++ +
Sbjct: 418 PWLMAGDFNEILFSHEKQCGRMKAQSAMDEFRHALTDCGLDDLGF-EGDAFTWRNHSHSQ 476
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + S H P+ IE +
Sbjct: 477 EGYIREWLDRAVANPEWRAMFPAARVINGDP----RHSDHRPVIIELE 520
>gi|300705174|ref|YP_003746777.1| metal dependent endonuclease/phosphatase [Ralstonia solanacearum
CFBP2957]
gi|299072838|emb|CBJ44194.1| putative metal dependent endonuclease/phosphatase [Ralstonia
solanacearum CFBP2957]
Length = 248
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 13/117 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L + + T P V+AGDFN N + Q + + + +
Sbjct: 143 QRQAEALIERVRSVVPTDAPLVVAGDFNDWNNRLD--RVICQALGATEVADKAAGARPLR 200
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + ++ + D + S H PL E
Sbjct: 201 TFPSH---------LPWLRLDRIYVRGFDIERAHALTGRDWAQR--SDHVPLLAELS 246
>gi|126335204|ref|XP_001363714.1| PREDICTED: similar to reverse transcriptase/ribonuclease H/putative
methyltransferase [Monodelphis domestica]
Length = 282
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 41/118 (34%), Gaps = 5/118 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D +++ + GDFN + + + ++ + +
Sbjct: 165 EIDALYDVYLDVRLRWNMEDIMFMGDFNADCSYVTPSQWPSIRLRTSSTFQWLIPDT-AD 223
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
V + + V R ++ ++ S +I + + + L S H P+ +
Sbjct: 224 TTVTPTDCAYDRIVVSGRKLQSAIVPGSATIFDFQAAYNLSSGIALAISDHYPVEVTL 281
>gi|330719278|ref|ZP_08313878.1| exonuclease III [Leuconostoc fallax KCTC 3537]
Length = 271
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 23/132 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGL 51
+ + + Q + P + +GDFN I + + + G
Sbjct: 144 DAYRHYI-QSLDQQKPVIFSGDFNVAHQEIDLKNPKSNRHSAGFTPEEREKFTNLLDSGF 202
Query: 52 LIRFPQE----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
F + + +K+S +L + LDT +
Sbjct: 203 TDTFRYFEPTLTGAYTWWAQISKTSKIN-NSGWRIDYYLTSERLNERLKAHHILDTGARQ 261
Query: 108 LSTHCPLTIEYD 119
H P+ +E D
Sbjct: 262 --DHAPIMLEID 271
>gi|301605741|ref|XP_002932509.1| PREDICTED: deoxyribonuclease-1-like [Xenopus (Silurana) tropicalis]
Length = 282
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 43/119 (36%), Gaps = 5/119 (4%)
Query: 4 QQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + ++ + GDFN + + D+D ++ + + +
Sbjct: 162 REIDALYDVYEDIMEKWQTDNMIFLGDFNAGCSYVTDSDWDNIRLRTNEQFAWLIPD-AT 220
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
V + V D + ++ +S + + + T+ L S H P+ +E
Sbjct: 221 DTTVGNTCCAYDRIVVSGADLQEAIVQDSVKVFDFQKKYKLTQEEALAVSDHFPVEMEL 279
>gi|29420515|dbj|BAC66501.1| DNA lyase [Cordyceps militaris]
Length = 624
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/156 (10%), Positives = 29/156 (18%), Gaps = 43/156 (27%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIG------------------------ 37
+Q E L I G ++ GD N + +
Sbjct: 161 RQSFVEALDARIRNLITAGKQVILTGDLNIVRSELDSSNVAEGLIKEGMTMDEWQSLPAR 220
Query: 38 --------------DTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
D D + + F + K + +
Sbjct: 221 RIFNQLVFEGTVIGDRDTGREHAVLWDICRCFHPRRVGMHTC-WDTKRNTRPANVGSRID 279
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S HCP+
Sbjct: 280 YILCSDGIKDWI--VDSNIQEGLMGSDHCPVYATMS 313
>gi|319956878|ref|YP_004168141.1| exodeoxyribonuclease iii [Nitratifractor salsuginis DSM 16511]
gi|319419282|gb|ADV46392.1| exodeoxyribonuclease III [Nitratifractor salsuginis DSM 16511]
Length = 258
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 27/127 (21%), Gaps = 23/127 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLL 52
+ + K G+ + GD N I +
Sbjct: 134 EHIEGLRKKGMSIIFCGDVNTAHRPIDLARPKENEGISGFLPVERAWIDKLIEHGYIDTF 193
Query: 53 IRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
++ R K+ D D I+ D S H
Sbjct: 194 RYIHGDEPERYSWWSMRTKARERNVGWRIDYFFVSKDLKERILDADILAEIEG----SDH 249
Query: 112 CPLTIEY 118
P+++
Sbjct: 250 APVSLRL 256
>gi|184157496|ref|YP_001845835.1| extracellular nuclease [Acinetobacter baumannii ACICU]
gi|332872463|ref|ZP_08440434.1| endonuclease/exonuclease/phosphatase family protein [Acinetobacter
baumannii 6014059]
gi|183209090|gb|ACC56488.1| predicted extracellular nuclease [Acinetobacter baumannii ACICU]
gi|322507811|gb|ADX03265.1| Putative extracellular nuclease [Acinetobacter baumannii 1656-2]
gi|323517411|gb|ADX91792.1| extracellular nuclease [Acinetobacter baumannii TCDC-AB0715]
gi|332739349|gb|EGJ70205.1| endonuclease/exonuclease/phosphatase family protein [Acinetobacter
baumannii 6014059]
Length = 812
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 39/145 (26%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +W + ++ GD N + Q ++
Sbjct: 635 KAVDQIVQWLAKNPTQVPKQNALLVGDMNSYAKEAPILAFEKANYKVLLNDAKVGQGAQA 694
Query: 62 TCNVIK--------RNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSD----- 100
V +LD+ + D D + + +++ Y++
Sbjct: 695 YSYVFGVASDANGNGGAGNLDHAIADADLYPKVVRTFAWHINADEPTVLDYNEEYKTDEQ 754
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D
Sbjct: 755 KALFYSEDAYRSSDHDPVIVDLDLN 779
>gi|241113465|ref|YP_002973300.1| Endonuclease/exonuclease/phosphatase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240861673|gb|ACS59339.1| Endonuclease/exonuclease/phosphatase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 242
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 29/119 (24%), Gaps = 16/119 (13%)
Query: 4 QQGEWLKK--WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W +P ++ GDFN +S D P+
Sbjct: 137 RQMTTLLNPGWLRGTTDEPLPTILCGDFNAIPSSATYRLAARSLKDAQLAGSAAPRATFP 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + + S H PL E F
Sbjct: 197 SRYP-------------LMRLDHIFVTDDLIVKQAAVL-ENRLTRIASDHLPLLAEIGF 241
>gi|154484494|ref|ZP_02026942.1| hypothetical protein EUBVEN_02208 [Eubacterium ventriosum ATCC
27560]
gi|149734342|gb|EDM50259.1| hypothetical protein EUBVEN_02208 [Eubacterium ventriosum ATCC
27560]
Length = 364
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 42/130 (32%), Gaps = 16/130 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM-----------DPDGLLI 53
Q L +++ K G + GDFN + + D + + + +
Sbjct: 238 QINMLVSDLEKEYKAGNYVLCGGDFNHDLKASEDDSENRESWAYPFPRKKLPSNFSFCID 297
Query: 54 RFPQEKESTCNVIKRNK--SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ E++ RN F+I ++ V YD + S H
Sbjct: 298 QLSDEEKDNLWNSARNADMEYKPGVTYTVTLDGFIISDNIECVKYDNINT---GYTYSDH 354
Query: 112 CPLTIEYDFE 121
P+ +++ +
Sbjct: 355 DPVYVKFKLK 364
>gi|88799872|ref|ZP_01115445.1| hypothetical protein MED297_03080 [Reinekea sp. MED297]
gi|88777452|gb|EAR08654.1| hypothetical protein MED297_03080 [Reinekea sp. MED297]
Length = 551
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 39/133 (29%), Gaps = 21/133 (15%)
Query: 1 MLSQ--QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
M+ + + L W I P + GDFN N
Sbjct: 426 MVKRLNAVDRLLGWLS--IPEDQPAFLIGDFNAYANERPIRKLARAGW------KTLVGT 477
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL---------- 108
+ V LDY + + + ++ + + ++ Q T+ L
Sbjct: 478 ANAYSYVYDGQPGVLDYVIGNAMAERLVLQSGYWPINSGQVAGATQVPFLSRLRLPEFYG 537
Query: 109 -STHCPLTIEYDF 120
S H P+ I+ F
Sbjct: 538 FSDHDPVFIDVSF 550
>gi|313207216|ref|YP_004046393.1| endonuclease/exonuclease/phosphatase [Riemerella anatipestifer DSM
15868]
gi|312446532|gb|ADQ82887.1| Endonuclease/exonuclease/phosphatase [Riemerella anatipestifer DSM
15868]
gi|315022982|gb|EFT36003.1| endonuclease/exonuclease/phosphatase [Riemerella anatipestifer
RA-YM]
gi|325335338|gb|ADZ11612.1| Metal-dependent hydrolase [Riemerella anatipestifer RA-GD]
Length = 286
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 11/110 (10%), Positives = 30/110 (27%), Gaps = 6/110 (5%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
++++ ++ + I ++ GDFN ++ + L + T
Sbjct: 173 IQEYINKDREQNIYTLVMGDFNTTFSNQELLQQVLPPLAEASTLA------KKTLLNNGT 226
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ + ++ Y H P+ E
Sbjct: 227 FQAFGKKVGQSPRIDYIFVPKDTEVLQYQILSNQFYGQYPYDHFPVLTEI 276
>gi|299770919|ref|YP_003732945.1| putative extracellular nuclease [Acinetobacter sp. DR1]
gi|298701007|gb|ADI91572.1| putative extracellular nuclease [Acinetobacter sp. DR1]
Length = 812
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 14/145 (9%), Positives = 38/145 (26%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +W + ++ GD N + Q ++
Sbjct: 635 KAVDQIVQWLAKNPTQVQKQNALLVGDMNSYAKEEPILSFEKANYKVLLNDTKVGQGTQA 694
Query: 62 TCNVIK--------RNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSD----- 100
V +LD+ + D + + +++ Y++
Sbjct: 695 YSYVYGVASDANGNGGAGNLDHAIADAALYPKVVRTFAWHINADEPTVLDYNEEYKTDEQ 754
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D
Sbjct: 755 KALFFGEDAYRSSDHDPVIVDLDLN 779
>gi|222054058|ref|YP_002536420.1| Endonuclease/exonuclease/phosphatase [Geobacter sp. FRC-32]
gi|221563347|gb|ACM19319.1| Endonuclease/exonuclease/phosphatase [Geobacter sp. FRC-32]
Length = 258
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 26/119 (21%), Gaps = 16/119 (13%)
Query: 5 QGEWLK--KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L W P ++ GDFN S F + + + +
Sbjct: 154 QANALSGPDWLG-HPDCRPPVILCGDFNALPGSF-VYRHFIRSLHDAH--RKGRGRRLKG 209
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + ++ + S H PL +
Sbjct: 210 TWP---------VRLPLMRIDYLFVTPDITVRRISAHRTPLTMA-ASDHLPLVAALELS 258
>gi|62085812|gb|AAX63297.1| DNA lyase [Beauveria bassiana]
gi|62085814|gb|AAX63298.1| DNA lyase [Beauveria bassiana]
gi|62085824|gb|AAX63303.1| DNA lyase [Beauveria bassiana]
gi|62085826|gb|AAX63304.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 31/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S+ S HCP+
Sbjct: 263 IFCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085806|gb|AAX63294.1| DNA lyase [Beauveria bassiana]
gi|62085816|gb|AAX63299.1| DNA lyase [Beauveria bassiana]
gi|62085818|gb|AAX63300.1| DNA lyase [Beauveria bassiana]
gi|62085828|gb|AAX63305.1| DNA lyase [Beauveria bassiana]
gi|62085832|gb|AAX63307.1| DNA lyase [Beauveria bassiana]
gi|62085842|gb|AAX63312.1| DNA lyase [Beauveria bassiana]
gi|62085848|gb|AAX63315.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 31/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S+ S HCP+
Sbjct: 263 IFCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085800|gb|AAX63291.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 31/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S+ S HCP+
Sbjct: 263 IFCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085884|gb|AAX63333.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 31/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S+ S HCP+
Sbjct: 263 IFCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085852|gb|AAX63317.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085854|gb|AAX63318.1| DNA lyase [Beauveria bassiana]
gi|62085856|gb|AAX63319.1| DNA lyase [Beauveria bassiana]
gi|62085858|gb|AAX63320.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085860|gb|AAX63321.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085862|gb|AAX63322.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085864|gb|AAX63323.1| DNA lyase [Cordyceps staphylinidicola]
gi|62085866|gb|AAX63324.1| DNA lyase [Cordyceps bassiana]
gi|62085868|gb|AAX63325.1| DNA lyase [Beauveria bassiana]
gi|62085870|gb|AAX63326.1| DNA lyase [Beauveria bassiana]
gi|62085872|gb|AAX63327.1| DNA lyase [Beauveria bassiana]
gi|62085876|gb|AAX63329.1| DNA lyase [Beauveria bassiana]
gi|62085878|gb|AAX63330.1| DNA lyase [Beauveria bassiana]
gi|62085880|gb|AAX63331.1| DNA lyase [Beauveria bassiana]
gi|62085882|gb|AAX63332.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 31/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S+ S HCP+
Sbjct: 263 IFCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085886|gb|AAX63334.1| DNA lyase [Beauveria bassiana]
gi|62085888|gb|AAX63335.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 31/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S+ S HCP+
Sbjct: 263 IFCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|86146808|ref|ZP_01065128.1| putative phospholipase C precursor [Vibrio sp. MED222]
gi|85835458|gb|EAQ53596.1| putative phospholipase C precursor [Vibrio sp. MED222]
Length = 444
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 11/125 (8%)
Query: 3 SQQGEWLKKWADQ-KIKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + +++ A +I T + +GDFN + D + + D
Sbjct: 317 QRQFKQMRQLAQSLEIPTSETVIYSGDFNVNKLKFPDDYQQMFANLQADEPTYSGYTAST 376
Query: 61 STCNVIKR---------NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ N LDY V+ + +N+ V S + LS H
Sbjct: 377 FDPRINNFAGEPMSGGENVEYLDYVVVSSEYAQKTHNNNRVDVPRSTSSELWKHYNLSDH 436
Query: 112 CPLTI 116
P++
Sbjct: 437 FPVSA 441
>gi|304382431|ref|ZP_07364930.1| AP endonuclease domain protein [Prevotella marshii DSM 16973]
gi|304336439|gb|EFM02676.1| AP endonuclease domain protein [Prevotella marshii DSM 16973]
Length = 362
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 30/114 (26%), Gaps = 19/114 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + + ++ GDFN S + + D L +
Sbjct: 262 QADSVAAFVKANKRHS--IILCGDFNDNPLS------YTRTTLGDVLTDCYIATGNGPGI 313
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
N+ N + + + + + K S H P+
Sbjct: 314 SYHDNRMY-------VRIDNIMCSDEWIPYACKVDNKM----KHSDHYPIYCWL 356
>gi|62085890|gb|AAX63336.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 31/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDLRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S+ S HCP+
Sbjct: 263 IFCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|262183784|ref|ZP_06043205.1| putative exodeoxyribonuclease [Corynebacterium aurimucosum ATCC
700975]
Length = 299
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 11/88 (12%), Positives = 20/88 (22%)
Query: 31 RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS 90
+ + D P+ R ++ + D +
Sbjct: 211 VDYETKTAWEAAADPQWFDVARRLHPEADGPYTWWTYRGQAFNNDAGWRIDYQAATKAML 270
Query: 91 FSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
T + S H PL +EY
Sbjct: 271 ERAQRTWVEKAPTVEERWSDHSPLLVEY 298
>gi|218780993|ref|YP_002432311.1| endonuclease/exonuclease/phosphatase [Desulfatibacillum
alkenivorans AK-01]
gi|218762377|gb|ACL04843.1| Endonuclease/exonuclease/phosphatase [Desulfatibacillum
alkenivorans AK-01]
Length = 250
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 29/120 (24%), Gaps = 11/120 (9%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ L + G+P ++ GDFN K +S + T
Sbjct: 142 ARSARLLLN-ILEDFAPGLPTLVMGDFNAKPDSSCRKEFEQGGFKDPFDKRFGGTHHGFT 200
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
R + Y S S H + E+ ++
Sbjct: 201 GKDDGRRIDWILYRGGI----------EPVKASRKIIRGRFGGVYPSDHFQVYCEFTWKS 250
>gi|62085834|gb|AAX63308.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 32/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDNDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 263 ILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085794|gb|AAX63288.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 32/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDNDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 263 ILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|332976281|gb|EGK13142.1| hypothetical protein HMPREF9373_1351 [Psychrobacter sp. 1501(2011)]
Length = 1300
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 27/138 (19%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + LK+W D V+ GDFN D +KE
Sbjct: 785 EAAQQLKQWMDTDPTGTGDTDNVLIGDFNSYTMEDSLQYLENSGYD---------IQKEG 835
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD----------------LDTRR 105
V SLD+ + + + + ++ +++
Sbjct: 836 FSYVFDGLWGSLDHVITSESMSDQITGVATWGINAEEATAFDYNTNFKGNGQKGLYAPDA 895
Query: 106 SKLSTHCPLTIEYDFEKG 123
+ S H P+ I + +
Sbjct: 896 YRASDHNPVLIGLNLNQN 913
>gi|222084602|ref|YP_002543131.1| hypothetical protein Arad_0546 [Agrobacterium radiobacter K84]
gi|221722050|gb|ACM25206.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 331
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 30/117 (25%), Gaps = 3/117 (2%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L + G+P +I GD N + D + F
Sbjct: 214 ERQMAALITAVEA-YAPGLPILIGGDLNT--GNHTGGDFRTDTLFAMAEGRGFECHGGPL 270
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R + FL SY S LD LS H + +
Sbjct: 271 DQTSTRPSLITRFPDRTMKLDWFLSRGLKIGESYLVSSLDADGKPLSDHDMIVCTIE 327
>gi|149279450|ref|ZP_01885580.1| hypothetical protein PBAL39_16661 [Pedobacter sp. BAL39]
gi|149229743|gb|EDM35132.1| hypothetical protein PBAL39_16661 [Pedobacter sp. BAL39]
Length = 304
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/144 (11%), Positives = 29/144 (20%), Gaps = 32/144 (22%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + + I P ++ GDFN + Q++ F
Sbjct: 167 RESAKLILRKIRA-IAGDTPTILTGDFNVDQTNEIYGILTGQQLADAFETTAFRYAT--- 222
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR------------------ 104
+ L+ S + Y R
Sbjct: 223 ---NGTINHFDINTKTKSRIDHILLSKSIKVKRYGVLTDTYRSAGKENAEVSTSGNFPKE 279
Query: 105 -------RSKLSTHCPLTIEYDFE 121
S H P+ D
Sbjct: 280 VSLQRYEARLPSDHFPVMAVIDLN 303
>gi|237801483|ref|ZP_04589944.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331024342|gb|EGI04399.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 379
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 36/132 (27%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKI--NSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + D+ G P++I GDFN + Q D L ++
Sbjct: 247 QKQIAATETLLDKLESGGTPWLIGGDFNLLPLGQYQRLPEPQRQSYAADSELHALWEKYP 306
Query: 61 -----------STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R + DR S VS DT +S
Sbjct: 307 MIPSNAESSGIDRSKWLTRFPNDSRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--IS 364
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 365 DHLPVIGRFLLP 376
>gi|224173118|ref|XP_002339729.1| predicted protein [Populus trichocarpa]
gi|222832130|gb|EEE70607.1| predicted protein [Populus trichocarpa]
Length = 316
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 34/134 (25%), Gaps = 28/134 (20%)
Query: 6 GEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ L W + T V+ GDFN T +
Sbjct: 144 AQQLSNWLATRPTGATSPHVVLVGDFNAYAKEDPITTLEAGGYVKVSQGL---------S 194
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDTRRS 106
SLD+ ++ + + ++ Y+ S
Sbjct: 195 YAFDGMWGSLDHVLVSTSLQPSVGRAVKWAINAEEPEVLDYNVEFKSLDQQASFYAPTAY 254
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+ + +F
Sbjct: 255 RSSDHNPILLGLNF 268
>gi|282897774|ref|ZP_06305773.1| hypothetical protein CRD_01893 [Raphidiopsis brookii D9]
gi|281197453|gb|EFA72350.1| hypothetical protein CRD_01893 [Raphidiopsis brookii D9]
Length = 257
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 12/96 (12%), Positives = 22/96 (22%), Gaps = 9/96 (9%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
++ GDFN S+ D L + ++
Sbjct: 165 LLLTGDFNAGPKSLERIILADNYRIRDVLGNLPLESQK----TFHDFTGQAWDARDTIYC 220
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ N D S H P+ ++
Sbjct: 221 DHRWQINHVI-----IDDQRWEGIWPSDHFPVIVKL 251
>gi|241766052|ref|ZP_04763968.1| Endonuclease/exonuclease/phosphatase [Acidovorax delafieldii 2AN]
gi|241363933|gb|EER59221.1| Endonuclease/exonuclease/phosphatase [Acidovorax delafieldii 2AN]
Length = 249
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 19/117 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E L+++ ++++ TG P V+AGDFN ++M L F + +
Sbjct: 152 RQVERLQQFIEREVPTGSPVVVAGDFND-------WGLQIKRMLSGFGLYEFDAPR-AFT 203
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + S + ++S H PL E+
Sbjct: 204 YP---------ARLPLVQLDHVYVR-GLSPIGLHVPRG-RIWWRMSDHLPLIAEFRL 249
>gi|194219348|ref|XP_001498739.2| PREDICTED: similar to Deoxyribonuclease I-like 2 precursor (DNase
I-like 2) (DNase I homolog protein DHP1) [Equus
caballus]
Length = 302
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 13/100 (13%), Positives = 33/100 (33%), Gaps = 3/100 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+ GDFN + + + D ++ + + + V + + V
Sbjct: 201 DDILFLGDFNADCSYVREEDWAAIRLRSSEVFKWLIPDS-ADTTVGNSDCAYDRIVVCGA 259
Query: 81 DNKNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPLTIEY 118
+ L S ++ + + T+ +S H P+ +
Sbjct: 260 RLRRSLKPQSAAVHDFQEEFGLDQTQALAISDHFPVEVTL 299
>gi|281337761|gb|EFB13345.1| hypothetical protein PANDA_019984 [Ailuropoda melanoleuca]
Length = 294
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 12/97 (12%), Positives = 29/97 (29%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
++ GDFN S+ + ++E T + + +
Sbjct: 176 MILLGDFNADCASLTKKRLGELLLRTQAGFHWVIGDEEDTTVRASTHCAYDRIVLHGERC 235
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ L + + +S H P+ +E +
Sbjct: 236 QSRLHSAAAFNFPRSFQLTEEEALNISDHYPVEVELN 272
>gi|156933850|ref|YP_001437766.1| hypothetical protein ESA_01676 [Cronobacter sakazakii ATCC BAA-894]
gi|156532104|gb|ABU76930.1| hypothetical protein ESA_01676 [Cronobacter sakazakii ATCC BAA-894]
Length = 370
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 35/130 (26%), Gaps = 14/130 (10%)
Query: 3 SQQGEWLKKWADQKIKTGIPFV-IAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + + G F+ IAGDFN S ++ D +
Sbjct: 241 KAQAQRVAEIYKARRDAGEQFIAIAGDFNDTPESDAL-APLLKETDLRDAFTHPAFDNGG 299
Query: 62 TCNVIKRNKSS-----------LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-S 109
+ + L V + V ++ + + S
Sbjct: 300 YPGTWGNSAKNNKLDYILLSPALWERVTAGGVIRKGMWPGERPVKWEVYPELKKPQQAGS 359
Query: 110 THCPLTIEYD 119
H L ++ +
Sbjct: 360 DHAALWVDLN 369
>gi|301788616|ref|XP_002929727.1| PREDICTED: deoxyribonuclease-1-like 1-like [Ailuropoda melanoleuca]
Length = 301
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 12/97 (12%), Positives = 29/97 (29%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
++ GDFN S+ + ++E T + + +
Sbjct: 176 MILLGDFNADCASLTKKRLGELLLRTQAGFHWVIGDEEDTTVRASTHCAYDRIVLHGERC 235
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ L + + +S H P+ +E +
Sbjct: 236 QSRLHSAAAFNFPRSFQLTEEEALNISDHYPVEVELN 272
>gi|25027245|ref|NP_737299.1| putative exodeoxyribonuclease [Corynebacterium efficiens YS-314]
gi|259506618|ref|ZP_05749520.1| exodeoxyribonuclease [Corynebacterium efficiens YS-314]
gi|23492526|dbj|BAC17499.1| putative exodeoxyribonuclease [Corynebacterium efficiens YS-314]
gi|259165816|gb|EEW50370.1| exodeoxyribonuclease [Corynebacterium efficiens YS-314]
Length = 331
Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 25/114 (21%), Gaps = 7/114 (6%)
Query: 10 KKWADQKI----KTGIPFVIAGDF---NRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ W D V GDF + + G + D P+
Sbjct: 215 RAWMDSVFGCFPDEQSQVVGGGDFFGAVDYVGTAGRREANPDPAWFDVARRLQPEGDGPY 274
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
R K+ D + + S H PL +
Sbjct: 275 TWWTYRGKAFDTNAGWRIDYQAATKSMCERAERSWVDKAAAYDLRWSDHSPLNV 328
>gi|291513900|emb|CBK63110.1| Metal-dependent hydrolase [Alistipes shahii WAL 8301]
Length = 263
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 31/115 (26%), Gaps = 9/115 (7%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ L + + P ++ GDFN ++ + + R
Sbjct: 158 VKLLIEKIHEIAGKKAPAIVGGDFN-----TPVDSPIFKPLTKYMVSARAKAATTDHKGT 212
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S+ D V + + D + +S H P+ + +
Sbjct: 213 FNGFGSAPDTIV----IDHLYYRGKLKCQLFATLDGNYGAPYISDHYPIAMVFTL 263
>gi|254787392|ref|YP_003074821.1| extracellular nuclease [Teredinibacter turnerae T7901]
gi|237685410|gb|ACR12674.1| extracellular nuclease [Teredinibacter turnerae T7901]
Length = 935
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 33/137 (24%), Gaps = 24/137 (17%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ W +I GD N T ES
Sbjct: 708 ARAVDAWLQTAPTGIADNDAIIMGDLNAYAAEAPLTFLLSNGYSNVESA-------ESYS 760
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS---------------KL 108
V +LDY ++ + V+ D++D + +
Sbjct: 761 YVFDGQVGTLDYVLLSDSLYSKFEQAEIWHVNSDEADALDYNTDYGRSLTYYDGSTATRN 820
Query: 109 STHCPLTIEYDFEKGNV 125
S H P+ + + V
Sbjct: 821 SDHDPVLVGLRMDSAPV 837
>gi|116618622|ref|YP_818993.1| exonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
gi|116097469|gb|ABJ62620.1| Exonuclease III [Leuconostoc mesenteroides subsp. mesenteroides
ATCC 8293]
Length = 272
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 11/131 (8%), Positives = 31/131 (23%), Gaps = 27/131 (20%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDP---DGL 51
+++ + P + +GD N I + + +
Sbjct: 147 REYIKT-LDATKPVIFSGDMNVAHQEIDLKNPKPNRHSAGFTDQEREKFSALLDAGFTDT 205
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV---SYDQSDLDTRRSKL 108
+ S + + +L+ + + S +
Sbjct: 206 FRSLNPDTPSVYTWWAQISKTSKINNSGWRIDYYLVSDRIAENVTESCVIDTGARQ---- 261
Query: 109 STHCPLTIEYD 119
H P+ +E +
Sbjct: 262 -DHAPILLEIN 271
>gi|260063471|ref|YP_003196551.1| hypothetical protein RB2501_01645 [Robiginitalea biformata
HTCC2501]
gi|88782915|gb|EAR14089.1| hypothetical protein RB2501_01645 [Robiginitalea biformata
HTCC2501]
Length = 332
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 21/116 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q +K + + P +I GDFN S ++S
Sbjct: 235 QARLVKAH---QQEAPYPTIICGDFNATPFSHTYRILSAGL-------------EDSFGQ 278
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++ + L D+ ++ + D+ LS H P+
Sbjct: 279 AGSGIGATYSLRGLPYRIDYILADSRMEVLHHKIFDI-----HLSDHRPVMATLRL 329
>gi|327287974|ref|XP_003228703.1| PREDICTED: deoxyribonuclease-1-like 2-like [Anolis carolinensis]
Length = 277
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 3/100 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+ GDFN + +G D ++ + ++E V + + V
Sbjct: 176 DNMMFLGDFNADCSYVGKKDWASIRLRTSEVFKWLIPDEE-DTTVGHSDCAYDRIVVSGA 234
Query: 81 DNKNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPLTIEY 118
K ++ NS + + + + +S H P+ +
Sbjct: 235 QMKKWVKPNSAKVFDFQEEFKLSQEKALAVSDHFPVEVTL 274
>gi|41053678|ref|NP_957163.1| deoxyribonuclease gamma-like [Danio rerio]
gi|38649119|gb|AAH63237.1| Zgc:77816 [Danio rerio]
Length = 282
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 2/100 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GDFN + ++ D + T + + V
Sbjct: 163 DNVMILGDFNADGAYVSKKKMKAIRIRTDTDFHWLIGDDVDTTVKTTNDNTYDRIVVYKE 222
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
D ++ S ++ ++ T L S H P+ +
Sbjct: 223 DMLEAVVPRSAKPFNFQEAYKLTEEEALDVSDHYPVEVTL 262
>gi|34497748|ref|NP_901963.1| hypothetical protein CV_2293 [Chromobacterium violaceum ATCC 12472]
gi|34103604|gb|AAQ59965.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 407
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 14/117 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L + Q I +P ++AGDFN Q++ + +
Sbjct: 302 RKQYRGLADYVRQAIADHLPLILAGDFNDWRGEAS--ALLRQELGLEEAFLTLH------ 353
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R+ S + + + S LS H PL E
Sbjct: 354 ----GRHAQSFPARMPMLALDRIYVRGLKVESARVLSGRPWSG--LSDHLPLCAEIR 404
>gi|29420517|dbj|BAC66502.1| DNA lyase [Isaria tenuipes]
Length = 611
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 15/156 (9%), Positives = 32/156 (20%), Gaps = 43/156 (27%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFW 43
+Q E L+ I G ++ GD N + + ++
Sbjct: 161 RQNFVEALEARIRNLITAGKEVILTGDLNIIRSEMDSSNIAEGLRKEGMTMDEWQSMPTR 220
Query: 44 QKMDP--------------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ ++ + F + K + +
Sbjct: 221 RILNQLLFDGTVIGPRDKAREDGVLWDICRCFHPTRRGMHTC-WDTKRNTRPANLGSRID 279
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S HCP+
Sbjct: 280 YILCSDGIKDW--FVDSNIQEGLMGSDHCPVYATMR 313
>gi|229828142|ref|ZP_04454211.1| hypothetical protein GCWU000342_00199 [Shuttleworthia satelles DSM
14600]
gi|229792736|gb|EEP28850.1| hypothetical protein GCWU000342_00199 [Shuttleworthia satelles DSM
14600]
Length = 277
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 19/135 (14%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------GLLI 53
+Q +W ++AD + P + GD+N I + M G
Sbjct: 143 DRQ-QWDARYADYLAGLDARKPVIACGDYNVAHEEIDLKNPDANHMSAGFTDQEREGFTR 201
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS---- 109
+ + + R+ + + R + + ++ + I + SD R S
Sbjct: 202 LLDRGFADSFRCLHRDLADAYSWWAQRVKSSKINNSGWRIDYFLVSDRILNRVNSSEMID 261
Query: 110 -----THCPLTIEYD 119
HCPL +E D
Sbjct: 262 SGARQDHCPLLLEID 276
>gi|327192091|gb|EGE59069.1| hypothetical protein RHECNPAF_248003 [Rhizobium etli CNPAF512]
Length = 267
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 29/116 (25%), Gaps = 16/116 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L ++ V+ GDFN +S + + GL
Sbjct: 167 EEQALALAGLVERVWPGDEGLVVCGDFNVLSDS-----ATFNILARLGLSDLVTGNGLVD 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K L+ + ++ +S H L ++
Sbjct: 222 TRTSYYLKQGRF-------ADYMLVTPEVKVARFEVVATPE----VSDHRALLLDI 266
>gi|190346925|gb|EDK39113.2| hypothetical protein PGUG_03211 [Meyerozyma guilliermondii ATCC
6260]
Length = 290
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 6/117 (5%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + + + G P + GDFN K S Q + +
Sbjct: 178 ESVRDIITYVN-HTRQGSPVFLGGDFNAKRTSAPYKYVATQMTPASIAPDPKGVDNKE-- 234
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNS-FSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N D F S + SY+ + +S H P+ ++
Sbjct: 235 --KSTNSGFQFNHPKTIDFIFFQDHGSKVKVDSYEILSSTSGNVVISDHSPVIADFS 289
>gi|312881196|ref|ZP_07740994.1| putative phospholipase C precursor [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309371088|gb|EFP98542.1| putative phospholipase C precursor [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 431
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 10/127 (7%)
Query: 5 QGEWLKKWA-DQKIKTGIPFVIAGDFNRKIN-SIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L+ + Q+I P ++ GDFN D + +D P S
Sbjct: 305 QLGELRVFISAQQIAEHEPVIVGGDFNIDREHYPEDFQQMLRILDAYDPGESSPFRYSSD 364
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--------RSKLSTHCPL 114
+ + ++ + L+ S S Y S L R + +LS H +
Sbjct: 365 PYLNHFSLNNDSTAIDRERLDYVLLLKSTSPKRYINSVLPRRVFTSELWGKWELSDHFAV 424
Query: 115 TIEYDFE 121
+ E
Sbjct: 425 EALIEIE 431
>gi|42518122|ref|NP_964052.1| exodeoxyribonuclease [Lactobacillus johnsonii NCC 533]
gi|41582406|gb|AAS08018.1| exodeoxyribonuclease [Lactobacillus johnsonii NCC 533]
gi|329666434|gb|AEB92382.1| exodeoxyribonuclease III [Lactobacillus johnsonii DPC 6026]
Length = 275
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDGLLIRFP 56
QK+ P + +GD+N I + +
Sbjct: 154 QKLDKSKPVIASGDYNVAHTPIDLKHPENNHHNAGFTDEERQGFDKLLKLGFTDTFRKVH 213
Query: 57 QE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ +R ++S D +++ + + +DT K HCP+
Sbjct: 214 GNVEGVYSWWAQRVRTSKDN-NSGWRIDYYIVSDRIADQVTKSEMIDTGDRK--DHCPIM 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 LEINL 275
>gi|300779721|ref|ZP_07089577.1| possible exodeoxyribonuclease III [Corynebacterium genitalium ATCC
33030]
gi|300533831|gb|EFK54890.1| possible exodeoxyribonuclease III [Corynebacterium genitalium ATCC
33030]
Length = 301
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 21/94 (22%)
Query: 26 AGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNF 85
AG F + + R E R ++ + D
Sbjct: 208 AGFFGAVDYVSDARRSACDEPRWFDVARRLHPEDAPYTWWTYRGQAFNNDAGWRIDYHAA 267
Query: 86 LIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
T + S H PL +EY
Sbjct: 268 TASMLERAERTWVEKAPTVEQRWSDHSPLLVEYR 301
>gi|332231442|ref|XP_003264906.1| PREDICTED: nocturnin-like [Nomascus leucogenys]
Length = 601
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 38/125 (30%), Gaps = 7/125 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP ++ GDFN + ++ + + +
Sbjct: 472 CDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPPY 531
Query: 63 CNVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEY 118
R + + + ++ +++ +Q + S S H L ++
Sbjct: 532 TTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDF 591
Query: 119 DFEKG 123
F +
Sbjct: 592 SFTEE 596
>gi|293608668|ref|ZP_06690971.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829241|gb|EFF87603.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 812
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 38/145 (26%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +W + ++ GD N + Q E+
Sbjct: 635 KAVDQIVQWLAKNPTQVPKQNALLVGDMNSYAKEEPILSFEKANYKVLLNDAKVGQGAEA 694
Query: 62 TCNVIK--------RNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSD----- 100
V +LD+ + D + + +++ Y++
Sbjct: 695 YSYVFGVASDANGNGGAGNLDHAIADAALYPKVVRTFAWHINADEPTVLDYNEEYKTDEQ 754
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D
Sbjct: 755 KALFYAEDAYRSSDHDPVIVDLDLN 779
>gi|227889124|ref|ZP_04006929.1| exodeoxyribonuclease III [Lactobacillus johnsonii ATCC 33200]
gi|227850353|gb|EEJ60439.1| exodeoxyribonuclease III [Lactobacillus johnsonii ATCC 33200]
Length = 275
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDGLLIRFP 56
QK+ P + +GD+N I + +
Sbjct: 154 QKLDKSKPVIASGDYNVAHTPIDLKHPENNHHNAGFTDEERQGFDKLLKLGFTDTFRKVH 213
Query: 57 QE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ +R ++S D +++ + + +DT K HCP+
Sbjct: 214 GNVEGVYSWWAQRVRTSKDN-NSGWRIDYYIVSDRIADQVTKSEMIDTGDRK--DHCPIM 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 LEINL 275
>gi|294506334|ref|YP_003570392.1| dioxygenase [Salinibacter ruber M8]
gi|294342662|emb|CBH23440.1| dioxygenase [Salinibacter ruber M8]
Length = 366
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 34/119 (28%), Gaps = 23/119 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + +Q+ + P ++ GDFN ++ +
Sbjct: 268 QARRIHRHIEQETR---PVLVTGDFNSTP-----HQWAYRHLLQGFRAA----------- 308
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ + L+ + + S L+ +S H P+ + G
Sbjct: 309 ---GGGATFPAGWPLVQIDHVLVGPEWRVGSATVPGLEATDF-VSDHRPVVARVRWRDG 363
>gi|290958905|ref|YP_003490087.1| integral membrane protein [Streptomyces scabiei 87.22]
gi|260648431|emb|CBG71542.1| putative integral membrane protein [Streptomyces scabiei 87.22]
Length = 364
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 37/118 (31%), Gaps = 15/118 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ + L+ WA + + P ++AGDFN + + L +
Sbjct: 258 RRELDALRAWAAK--DSKTPAILAGDFNASQDHAAFRAVLDTGLSDAARLTGQDRRPTWP 315
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + +D+ + S + + + + H +T++
Sbjct: 316 SRTTPRFGAQIDHVL-------------VSHEDFSARGIRFLKLSGTDHEAVTVDLAL 360
>gi|256847688|ref|ZP_05553133.1| exodeoxyribonuclease III [Lactobacillus coleohominis 101-4-CHN]
gi|256715377|gb|EEU30353.1| exodeoxyribonuclease III [Lactobacillus coleohominis 101-4-CHN]
Length = 275
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDG 50
+++ Q++ P + +GDFN I + D
Sbjct: 150 REYL-QQLDQQKPVIASGDFNVAHEPIDLAHPENNHHSAGFTDEEREHFTKLLKAGFTDS 208
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
P+EK + +R +S +L+ + + S +DT +
Sbjct: 209 FRHLHPEEKGAYSWWAQRVITSKQN-NSGWRIDYWLVSDRIADKVVKSSMIDTGARR--D 265
Query: 111 HCPLTIEYDF 120
H P+ ++ D
Sbjct: 266 HTPIELDIDL 275
>gi|160900882|ref|YP_001566464.1| endonuclease/exonuclease/phosphatase [Delftia acidovorans SPH-1]
gi|160366466|gb|ABX38079.1| Endonuclease/exonuclease/phosphatase [Delftia acidovorans SPH-1]
Length = 257
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 18/117 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q LK++ ++++ G P V+AGDFN I ++M L + +
Sbjct: 159 RQVSQLKRFIEREVPPGAPVVVAGDFNDWGGQI-------KRMLGGFGLYEYDELPSVPT 211
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + LD+ + L I ++S H PL E+
Sbjct: 212 YPSRLPLAQLDHVYVRGLTPLGLHVPKGRI-----------WWRMSDHLPLIAEFRL 257
>gi|148697887|gb|EDL29834.1| deoxyribonuclease 1-like 1, isoform CRA_b [Mus musculus]
Length = 321
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 29/104 (27%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ ++ GDFN S+ + + E T N +
Sbjct: 193 QRWQNENVILLGDFNADCASLTKKRLKSLLLRTKAGFHWVIPDGEDTTVRASTNCTYDRI 252
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
V + + L + + ++S H P+ +E
Sbjct: 253 VVHGQGCQMLLKAAATFDFPKRFQLTEEEALRISDHYPVEVELS 296
>gi|241661977|ref|YP_002980337.1| endonuclease/exonuclease/phosphatase [Ralstonia pickettii 12D]
gi|240864004|gb|ACS61665.1| Endonuclease/exonuclease/phosphatase [Ralstonia pickettii 12D]
Length = 248
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 13/116 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L + P V+AGDFN N + Q + + + +
Sbjct: 143 QRQAEALVDRVRSVVPPDAPLVVAGDFNDWNNRLD--RMICQALGATEVADKAADARPVR 200
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + ++ + + + S H PL E
Sbjct: 201 TFPS---------QMPWLRLDRIYVRGFDIERAHALTGREWAQR--SDHVPLLAEL 245
>gi|121603898|ref|YP_981227.1| endonuclease/exonuclease/phosphatase [Polaromonas naphthalenivorans
CJ2]
gi|120592867|gb|ABM36306.1| Endonuclease/exonuclease/phosphatase [Polaromonas naphthalenivorans
CJ2]
Length = 375
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 13/133 (9%), Positives = 32/133 (24%), Gaps = 19/133 (14%)
Query: 3 SQQGEWLKKWADQKIKTGIP-FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q +++ D + G V+ GD N + + + +
Sbjct: 245 KRQAARVREIYDAHLAEGDEWLVMMGDLNEVPGNAPLNPLLREGSSLRDVAGHPQYDNGG 304
Query: 62 TCNVIKRNKSS---------------LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+S + ++R + + +
Sbjct: 305 RPGTHGNCTASGKFDYILLSPGLFDKVKAAGVERRGMWGGTNGTLWPHFKEV---TRAEE 361
Query: 107 KLSTHCPLTIEYD 119
S H + +E D
Sbjct: 362 AASDHAAVWVELD 374
>gi|83746623|ref|ZP_00943673.1| dioxygenase [Ralstonia solanacearum UW551]
gi|207727912|ref|YP_002256306.1| endonuclease/exonuclease/phosphatase protein [Ralstonia
solanacearum MolK2]
gi|207742318|ref|YP_002258710.1| endonuclease/exonuclease/phosphatase protein [Ralstonia
solanacearum IPO1609]
gi|83726757|gb|EAP73885.1| dioxygenase [Ralstonia solanacearum UW551]
gi|206591154|emb|CAQ56766.1| endonuclease/exonuclease/phosphatase protein [Ralstonia
solanacearum MolK2]
gi|206593706|emb|CAQ60633.1| endonuclease/exonuclease/phosphatase protein [Ralstonia
solanacearum IPO1609]
Length = 248
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 13/117 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L + + T +P V+AGDFN N + Q + + + +
Sbjct: 143 QRQAEALIERVRSVVPTDVPLVVAGDFNDWNNRLD--RVICQALGATEVADKAAGARPLR 200
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + ++ + D + S H PL E
Sbjct: 201 TFPSH---------LPWLRLDRIYVRGFDIERAHALTGRDWAQR--SDHVPLLAELS 246
>gi|284029915|ref|YP_003379846.1| endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
gi|283809208|gb|ADB31047.1| Endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
Length = 258
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 30/117 (25%), Gaps = 2/117 (1%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L + V+AGD N + ++M S+ N
Sbjct: 142 QAKVLDELVRDLTTRDGLVVLAGDLNAPPDHPEI-SLLTERMTDCWSGRADAGHTYSSGN 200
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR-RSKLSTHCPLTIEYDF 120
+ ++ ID + ++ L S H + +
Sbjct: 201 PYLGHGEWIEDHRIDYILATHRDPHRLQVLDAGIRGLTEDNGLPPSDHYAVFADVAL 257
>gi|329770087|ref|ZP_08261482.1| hypothetical protein HMPREF0433_01246 [Gemella sanguinis M325]
gi|328837398|gb|EGF87028.1| hypothetical protein HMPREF0433_01246 [Gemella sanguinis M325]
Length = 356
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 42/128 (32%), Gaps = 14/128 (10%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINS---IGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + L ++ ++ K G ++ DFN+ + + + E
Sbjct: 232 QTKQLVEFVQKEYKKGNYVLVGADFNQSLKTLSKEEINKVPEDLWRAENFDKSLIPEGFK 291
Query: 62 TCNVIKRNKSSLDYFVID--------RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+N + L+ +++ ++ +VS + + S H P
Sbjct: 292 LVYDESKNSARLNNKPYVSGSEGTYGFIIDGYMVSDNIEVVSVETLGQ---DYRYSDHNP 348
Query: 114 LTIEYDFE 121
+ ++Y +
Sbjct: 349 VRLKYKLK 356
>gi|311276364|ref|XP_003135157.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Sus
scrofa]
Length = 515
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 30/136 (22%), Gaps = 26/136 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLLIR 54
L+ A+ + G +I GD N I D +
Sbjct: 178 LQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDGLLSNLRCQAG 237
Query: 55 FPQEKESTCNVI-----------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + L D + + ++ QS
Sbjct: 238 SHMGPFIDSYRYFQPKQKGAFTCWSTVTGARHLNYGSRIDYVLGDRALVMDTF-QSSFVL 296
Query: 104 RRSKLSTHCPLTIEYD 119
S HCP+ +
Sbjct: 297 PEVMGSDHCPVGAVLN 312
>gi|296876863|ref|ZP_06900911.1| exodeoxyribonuclease III [Streptococcus parasanguinis ATCC 15912]
gi|296432365|gb|EFH18164.1| exodeoxyribonuclease III [Streptococcus parasanguinis ATCC 15912]
Length = 282
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 25/139 (17%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQK 45
+Q W K+A ++ P + GD+N I + +
Sbjct: 148 ERQV-WDVKYAKYLAELDKQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEEREGFTN 206
Query: 46 MDPDGLLIRFPQ----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F E +R+K+S +L N + +
Sbjct: 207 LLAKGFTDTFRHLHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVTDKITKSDMI 265
Query: 102 DTRRSKLSTHCPLTIEYDF 120
D+ + H P+ +E
Sbjct: 266 DSGARQ--DHTPIVLEIKL 282
>gi|119485593|ref|ZP_01619868.1| hypothetical protein L8106_24460 [Lyngbya sp. PCC 8106]
gi|119456918|gb|EAW38045.1| hypothetical protein L8106_24460 [Lyngbya sp. PCC 8106]
Length = 258
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 11/115 (9%), Positives = 32/115 (27%), Gaps = 5/115 (4%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ + Q F++ GDFN + +S + + + + +
Sbjct: 148 SAQLISDRLSQFNADEYLFIVTGDFNAEPDS-----FTRKTLLKPLTNGVVLCDTLADID 202
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++ D+ ++ S H P+ +++
Sbjct: 203 LDEQMTYHEFTGKGFAAVDTIYYDSRLNLHQVSVDRTQIDYVWPSDHFPVIAQFN 257
>gi|21312312|ref|NP_081385.1| deoxyribonuclease-1-like 1 precursor [Mus musculus]
gi|288541367|ref|NP_001165625.1| deoxyribonuclease-1-like 1 precursor [Mus musculus]
gi|92090593|sp|Q9D7J6|DNSL1_MOUSE RecName: Full=Deoxyribonuclease-1-like 1; AltName: Full=DNase X;
AltName: Full=Deoxyribonuclease I-like 1; Short=DNase
I-like 1; Flags: Precursor
gi|12843807|dbj|BAB26122.1| unnamed protein product [Mus musculus]
gi|23270983|gb|AAH23246.1| Dnase1l1 protein [Mus musculus]
gi|73921494|gb|AAZ94277.1| DNase X [Mus musculus]
gi|74213970|dbj|BAE29406.1| unnamed protein product [Mus musculus]
gi|123228996|emb|CAM24336.1| deoxyribonuclease 1-like 1 [Mus musculus]
gi|148697888|gb|EDL29835.1| deoxyribonuclease 1-like 1, isoform CRA_c [Mus musculus]
Length = 314
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 29/104 (27%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ ++ GDFN S+ + + E T N +
Sbjct: 186 QRWQNENVILLGDFNADCASLTKKRLKSLLLRTKAGFHWVIPDGEDTTVRASTNCTYDRI 245
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
V + + L + + ++S H P+ +E
Sbjct: 246 VVHGQGCQMLLKAAATFDFPKRFQLTEEEALRISDHYPVEVELS 289
>gi|325567278|ref|ZP_08143945.1| endonuclease/exonuclease/phosphatase [Enterococcus casseliflavus
ATCC 12755]
gi|325158711|gb|EGC70857.1| endonuclease/exonuclease/phosphatase [Enterococcus casseliflavus
ATCC 12755]
Length = 259
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 34/123 (27%), Gaps = 14/123 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ Q + ++++ P ++ GD N + + + +
Sbjct: 149 IFEQLADQIERY---------PVLLMGDLNAEPTERVHRYLEQHFQNAKEHGQKPHHGPK 199
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+N + + F++V R S H PL E F
Sbjct: 200 G----SYQNFIYTLPWQELEEIDYIY-TKGFTVVKTACLTDSCDRRFPSDHFPLEAEVQF 254
Query: 121 EKG 123
E+
Sbjct: 255 EES 257
>gi|317496367|ref|ZP_07954721.1| endonuclease/Exonuclease/phosphatase [Gemella moribillum M424]
gi|316913503|gb|EFV34995.1| endonuclease/Exonuclease/phosphatase [Gemella moribillum M424]
Length = 354
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 41/128 (32%), Gaps = 14/128 (10%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINS---IGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + L ++ +++ G ++ DFN+++ + + ++K
Sbjct: 230 QTKQLIEFMEKEYAKGNYVLVGADFNQELRDLTKEEIEKTPAELWRAELFDKTLLKDKFK 289
Query: 62 TCNVIKRNKSSLDYFVID--------RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
R + L+ + F+ ++ + D + S H P
Sbjct: 290 LYYDNSRPSARLNNKPYEKGSNGTYEFIIDGFIASDNIEVSQVKTLDQ---DYRYSDHNP 346
Query: 114 LTIEYDFE 121
+ + + +
Sbjct: 347 VKLRFRLK 354
>gi|322710982|gb|EFZ02556.1| endonuclease/exonuclease/phosphatase family protein [Metarhizium
anisopliae ARSEF 23]
Length = 641
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 7/118 (5%)
Query: 5 QGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q E + Q + + AGDFN T + D + E
Sbjct: 526 QMELTANFIAQILAQDPKARIITAGDFNEFTQVQPVTTFTSKSGLLDADEVAGLAAVERY 585
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +N +LD+ I R N + + + S H P + +F
Sbjct: 586 TYLFDQNSEALDHMYISRGLANHAQVEHLHL-----NTWQNYDGQTSDHDPSVAKLNF 638
>gi|302564774|ref|NP_001181848.1| deoxyribonuclease-1-like 1 [Macaca mulatta]
Length = 302
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 31/108 (28%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ ++ GDFN S+ ++ + + E T + +
Sbjct: 170 QQWQSKDVILLGDFNADCASLTKKRLDKLELRTEPGFHWVIADGEDTTVRASTHCAYDRI 229
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ ++ L + + +S H P+ +E +
Sbjct: 230 VLHGERCRSLLHTAAAFDFPTTFQLTEEEALNISDHYPVEVELKLSQA 277
>gi|291303281|ref|YP_003514559.1| endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
gi|290572501|gb|ADD45466.1| Endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
Length = 592
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 11/118 (9%)
Query: 5 QGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q E + K+ + V+ GD N S + +E+
Sbjct: 484 QAELVNKFVKELQGAVPDANVVVLGDINDFEFSETVAKLTAGDALKGAYDLLDEKER--Y 541
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V N LD ++ + + S + S H P ++
Sbjct: 542 SYVFDGNSQVLDQILVSPKLAEAAELDVVHVNSEFTD-------QASDHDPSVVKLTL 592
>gi|90022590|ref|YP_528417.1| metal-dependent hydrolase-like protein [Saccharophagus degradans
2-40]
gi|89952190|gb|ABD82205.1| Endonuclease/exonuclease/phosphatase [Saccharophagus degradans
2-40]
Length = 261
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 16/101 (15%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
+P V+ GDFN + NS + + + + +DY
Sbjct: 177 QLPVVLVGDFNAEPNSEPYLKMVNGSPLQNNFWGL------TFTGFKSKAIAQIDYAW-- 228
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+I D + S H P+ E+
Sbjct: 229 --------AAGLTINKCKADRFDAYATPASDHYPIICEFKL 261
>gi|56342181|dbj|BAD73858.1| deoxyribonuclease I [Triakis scyllium]
Length = 281
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 4/119 (3%)
Query: 4 QQGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D K K G +I GD N + + TD ++ D +
Sbjct: 160 REIDALYDVFLDAKKKLGTDNMLIMGDLNADCSYVKPTDWAHIRLRKDRQFQWLIPDSAD 219
Query: 62 TCNVIKRNKSSLDYF--VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
T I + + N + + + + + +S H P+ +
Sbjct: 220 TSTTITTKCAYDRIIAVGSEMKNAIIDGSAAIYNFTSVLNLNNKMTAAVSDHYPVEVRL 278
>gi|190892922|ref|YP_001979464.1| hypothetical protein RHECIAT_CH0003338 [Rhizobium etli CIAT 652]
gi|190698201|gb|ACE92286.1| hypothetical protein RHECIAT_CH0003338 [Rhizobium etli CIAT 652]
Length = 357
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 26/67 (38%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L +Q + L +W + G ++AGDFNR++ GD + G+ +
Sbjct: 190 LMKQADILSEWIKTERAAGKRVIVAGDFNRQLLDRGDHVAAKLRAVDAGVQFYPTSRECW 249
Query: 62 TCNVIKR 68
+
Sbjct: 250 ASFPNRG 256
>gi|311269053|ref|XP_003132320.1| PREDICTED: deoxyribonuclease gamma-like [Sus scrofa]
Length = 119
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 26 AGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNF 85
GDFN + + ++ D + I +++E T N + + ++ +
Sbjct: 1 MGDFNAGCSYVPKKAWKNIRLRTDPMFIWLIKDQEDTTVKKSTNCAYDRIVLRGQEIVSS 60
Query: 86 LIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDFEKG 123
++ S SI + ++ T L S H P+ E+ +
Sbjct: 61 VVPGSNSIFDFQKAYRLTEEKALDVSDHFPV--EFKLQSS 98
>gi|290961375|ref|YP_003492557.1| hydrolase [Streptomyces scabiei 87.22]
gi|260650901|emb|CBG74018.1| putative secreted hydrolase [Streptomyces scabiei 87.22]
Length = 607
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 15/120 (12%)
Query: 5 QGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP---QEK 59
Q + + + Q + + GD N S ++++ G+L ++
Sbjct: 497 QAKAVNTFVKQVLAKDKKASVIALGDINDFEFSD-----TAKQLEDGGVLWSAIKSLPKR 551
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
E V + N LD + + + ++S H P + ++
Sbjct: 552 ERYSYVFQGNAQVLDQI-----LVSRSVRRATGFTYDSVHINAEFNDQISDHDPQVVRFE 606
>gi|332827055|gb|EGJ99843.1| hypothetical protein HMPREF9455_00267 [Dysgonomonas gadei ATCC
BAA-286]
Length = 285
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 36/123 (29%), Gaps = 6/123 (4%)
Query: 2 LSQQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+++Q L + + + G+P ++ GDFN +S + +
Sbjct: 166 MARQEGVTLLLQRIGE-LSKGLPVILTGDFNATPDSDVIKHVTDPANPNYLMHTKDIAVV 224
Query: 60 ESTC-NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+S + ++ + + +S H +T +
Sbjct: 225 KSGTNWTFHGFGQVPLEKREF--IDYIFVKPDTKVLKHTVIPEELDSKFISDHSAITAQI 282
Query: 119 DFE 121
+ E
Sbjct: 283 EIE 285
>gi|300932899|ref|ZP_07148155.1| putative exodeoxyribonuclease [Corynebacterium resistens DSM 45100]
Length = 344
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 10/75 (13%), Positives = 24/75 (32%), Gaps = 3/75 (4%)
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNF---LIDNSFSIVSYDQSDLDT 103
D + P+ R ++ D +++ + + +D+
Sbjct: 269 WFDVVRRINPEADGPYSWWTYRGQAFDTDAGWRLDLHVVTAGMLERAQEADNAWVDRVDS 328
Query: 104 RRSKLSTHCPLTIEY 118
+ S H P+ +EY
Sbjct: 329 YDLRWSDHSPVIVEY 343
>gi|295691916|ref|YP_003600526.1| exodeoxyribonuclease iii [Lactobacillus crispatus ST1]
gi|295030022|emb|CBL49501.1| Exodeoxyribonuclease III [Lactobacillus crispatus ST1]
Length = 275
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF-------------- 42
L + E W +K+ + QK+ P + +GD+N I
Sbjct: 136 LKRLAERQVWDQKYIEYLQKLDEKKPVLASGDYNCAHTEIDLKHPENNHHSAGFTDEERV 195
Query: 43 -WQKMDPDGLLIRFP----QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + G F + + +R +++ +L+ N +
Sbjct: 196 DFTNLLNAGFTDTFRKVHGEITDVYSWWAQRVRTAKAN-NSGWRIDYWLVSNRIADKVVR 254
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+DT + HCP+ +E +
Sbjct: 255 SEMIDTGKRA--DHCPILLEINL 275
>gi|241895249|ref|ZP_04782545.1| exodeoxyribonuclease III [Weissella paramesenteroides ATCC 33313]
gi|241871555|gb|EER75306.1| exodeoxyribonuclease III [Weissella paramesenteroides ATCC 33313]
Length = 289
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 23/135 (17%)
Query: 3 SQQG--EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQK 45
+Q + + + Q + P + +GDFN I + + +
Sbjct: 151 DRQAWDDAYRAYV-QTLDATKPVIFSGDFNVAHQEIDLKNPKSNHKKAGFTNEEREHFSQ 209
Query: 46 MDP---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ + ++ + + +L N + + S +D
Sbjct: 210 LLDAGFTDIFRYLHPDQAGVYTWWAQISKTSKINNSGWRIDYYLTSNRLADQVSELSVID 269
Query: 103 TRRSKLSTHCPLTIE 117
T + H P+ +E
Sbjct: 270 TGARQ--DHAPIKLE 282
>gi|195996619|ref|XP_002108178.1| hypothetical protein TRIADDRAFT_19413 [Trichoplax adhaerens]
gi|190588954|gb|EDV28976.1| hypothetical protein TRIADDRAFT_19413 [Trichoplax adhaerens]
Length = 527
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 37/143 (25%), Gaps = 30/143 (20%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDG 50
E L++ A+ + G VI GD N I + +D +G
Sbjct: 162 ELLQERAEALLIAGKHVVIVGDVNTSHKPIDHCEPDIKAMQNSPSCHWLDNLLIPLDSEG 221
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDR-------------DNKNFLIDNSFSIVSYD 97
+ + + + I + +VSY
Sbjct: 222 KVDSSISAGKKFIDSFRYFYPRRKEAFTCWSTVTSARKTNYGTRIDYI-IADKDLVVSYF 280
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+ S HCP+ + F
Sbjct: 281 AESQIQPEIEGSDHCPIYADLKF 303
>gi|307243437|ref|ZP_07525593.1| exodeoxyribonuclease III [Peptostreptococcus stomatis DSM 17678]
gi|306493161|gb|EFM65158.1| exodeoxyribonuclease III [Peptostreptococcus stomatis DSM 17678]
Length = 275
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 25/139 (17%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQK 45
+Q W KK+AD + + P + GD+N I + +
Sbjct: 141 DRQA-WDKKYADYLEGLAKHKPVLACGDYNVAHKEIDLANPASNHRSPGFTDEEREGFTN 199
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G + F Q +R K+S +++ + +
Sbjct: 200 LLARGFVDTFRQVHGDVEEVYSWWAQRVKTSKVN-NTGWRIDYWIVSQDVADKVRVSEMV 258
Query: 102 DTRRSKLSTHCPLTIEYDF 120
D+ + H P+ +E +
Sbjct: 259 DSGERQ--DHAPILLEVEL 275
>gi|301618038|ref|XP_002938432.1| PREDICTED: deoxyribonuclease gamma-like [Xenopus (Silurana)
tropicalis]
Length = 269
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
++ GDFN + + ++ D L + T + + S V
Sbjct: 160 ENIILLGDFNADGAYVSNKKMKTIRLRTDPDLHWLIDDDTDTTAINTTDFSYDRIVVHSS 219
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDFEKG 123
K+ + NS ++ + + + S H P+ +E++ KG
Sbjct: 220 ILKHV-VPNSAKPFNFQEEYKMSYEEAVAVSDHYPVEVEFNPAKG 263
>gi|162452973|ref|YP_001615340.1| endonuclease/exonuclease/phosphatase [Sorangium cellulosum 'So ce
56']
gi|161163555|emb|CAN94860.1| Endonuclease/Exonuclease/phosphatase [Sorangium cellulosum 'So ce
56']
Length = 343
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 21/117 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ E ++W D+ P V+AGDFN FW +
Sbjct: 238 ESELARQWVDE---APYPVVVAGDFN-MPVDSAIYRRFWAGFENAFSRAGL--------- 284
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ + L ++ S H P+ + +
Sbjct: 285 ---GFGATKRTRWFGVRIDHVLAGPGWTTERAWI-----GPDLGSDHLPIVADLRWS 333
>gi|149911488|ref|ZP_01900104.1| putative phospholipase C precursor [Moritella sp. PE36]
gi|149805452|gb|EDM65460.1| putative phospholipase C precursor [Moritella sp. PE36]
Length = 429
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 11/128 (8%)
Query: 3 SQQGEWLKKWAD-QKIKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q ++ +A Q I V GDFN + D + + D E
Sbjct: 302 QRQFRQMRDFAQAQNIPVTDTVVYGGDFNVNKLKFPTDYQQMFANLSADEPQYAGYTEST 361
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ ++L ++ N F+ + + + + + LS H
Sbjct: 362 FDPRINAYAGNALSGGENIEYLDYVVVSNEFAKRNENINTVKIPRTTVASLWKHWNLSDH 421
Query: 112 CPLTIEYD 119
P+
Sbjct: 422 FPVKAVIR 429
>gi|148697886|gb|EDL29833.1| deoxyribonuclease 1-like 1, isoform CRA_a [Mus musculus]
Length = 288
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 29/104 (27%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ ++ GDFN S+ + + E T N +
Sbjct: 160 QRWQNENVILLGDFNADCASLTKKRLKSLLLRTKAGFHWVIPDGEDTTVRASTNCTYDRI 219
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
V + + L + + ++S H P+ +E
Sbjct: 220 VVHGQGCQMLLKAAATFDFPKRFQLTEEEALRISDHYPVEVELS 263
>gi|307103565|gb|EFN51824.1| expressed protein [Chlorella variabilis]
Length = 274
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 10/129 (7%), Positives = 27/129 (20%), Gaps = 15/129 (11%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST--- 62
+ +W D++ ++ GD N + + R +E ++
Sbjct: 125 ALAVCEWMDKEKADCSAIILCGDLNSPPHE-AVHSVLRRLGYVSAYAARHGREPQAGGAA 183
Query: 63 ---CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS--------KLSTH 111
++ L + + + S H
Sbjct: 184 SFSGTWPTGIEAPLRDTGDFDCLDYVYVWTAPNHTVRVLDAEVYGLEPAEHDATLFPSDH 243
Query: 112 CPLTIEYDF 120
+
Sbjct: 244 AAVKATIQL 252
>gi|218677944|ref|ZP_03525841.1| putative exodeoxyribonuclease [Rhizobium etli CIAT 894]
Length = 73
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 9/69 (13%), Positives = 15/69 (21%)
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ S + D+ + S S H P+
Sbjct: 1 MHPGERVYTFWKYWRNSFERDAGLRIDHFLLSPAVEPWLRSATVRRKPRTWEHTSDHAPV 60
Query: 115 TIEYDFEKG 123
IE D +
Sbjct: 61 MIELDVSEA 69
>gi|189466216|ref|ZP_03015001.1| hypothetical protein BACINT_02586 [Bacteroides intestinalis DSM
17393]
gi|189434480|gb|EDV03465.1| hypothetical protein BACINT_02586 [Bacteroides intestinalis DSM
17393]
Length = 529
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 12/133 (9%), Positives = 31/133 (23%), Gaps = 13/133 (9%)
Query: 1 MLSQ--QGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP 56
+L + + E ++ ++ GD N K+ +
Sbjct: 301 VLRRVHEAEATLEFIKTVTAYFEDEDVLVVGDLNSYSKEDPIRVLEEGKLINELQKYAPN 360
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD---------LDTRRSK 107
+ + + LD+ + ++ D+ +
Sbjct: 361 EYSYAFFSNNSYATGYLDHSFATATLDAQICYAHPFHINADEPGVLKIIGGKPQKDNMYR 420
Query: 108 LSTHCPLTIEYDF 120
S H P+
Sbjct: 421 CSDHNPIVTFIKL 433
>gi|148544314|ref|YP_001271684.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|184153692|ref|YP_001842033.1| exodeoxyribonuclease [Lactobacillus reuteri JCM 1112]
gi|227365036|ref|ZP_03849073.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|325681652|ref|ZP_08161172.1| exodeoxyribonuclease [Lactobacillus reuteri MM4-1A]
gi|148531348|gb|ABQ83347.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|183225036|dbj|BAG25553.1| exodeoxyribonuclease [Lactobacillus reuteri JCM 1112]
gi|227069924|gb|EEI08310.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|324978964|gb|EGC15911.1| exodeoxyribonuclease [Lactobacillus reuteri MM4-1A]
Length = 275
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 12/129 (9%), Positives = 34/129 (26%), Gaps = 21/129 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDGL 51
+ + + + P + +GDFN I
Sbjct: 150 RDYLHE-LDQQKPVIASGDFNVAHEEIDLAHPATNHHSAGFTDEERTHFSKLLAAGFTDS 208
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+++ + + + +L+ + + + +D+ + H
Sbjct: 209 FRHLHPDEKGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITEAGMIDSGERR--DH 266
Query: 112 CPLTIEYDF 120
P+ +E D
Sbjct: 267 TPIILEIDL 275
>gi|145324102|ref|NP_001077640.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
thaliana]
gi|215275244|sp|A8MS41|CCR4D_ARATH RecName: Full=Carbon catabolite repressor protein 4 homolog 4;
Short=CCR4 homolog 4
gi|332193244|gb|AEE31365.1| carbon catabolite repressor protein 4-like 4 [Arabidopsis thaliana]
Length = 417
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 15/137 (10%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL--------- 51
+LS+ + K + + ++AGDFN + + P
Sbjct: 282 LLSRLAQ-FKTLISDEFECTPSLLLAGDFNSIPGDMVYSYLVSGNAKPTETIEEEEAPVP 340
Query: 52 ---LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDLDTRRS 106
+ + + N ++LDY I + + S D
Sbjct: 341 LSSVYEVTRGEPKFTNCTPGFTNTLDYIFISPSDFIKPVSILQLPEPDSPDVVGFLPNHH 400
Query: 107 KLSTHCPLTIEYDFEKG 123
S H P+ E++ +
Sbjct: 401 HPSDHLPIGAEFEIRRE 417
>gi|289423957|ref|ZP_06425750.1| exodeoxyribonuclease III [Peptostreptococcus anaerobius 653-L]
gi|289155734|gb|EFD04406.1| exodeoxyribonuclease III [Peptostreptococcus anaerobius 653-L]
Length = 275
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 37/132 (28%), Gaps = 29/132 (21%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRF 55
++ + P + GD+N N I + + + G + F
Sbjct: 151 EYLKT-LDEDKPVLACGDYNVAHNEIDLANPASNHMSPGFTDEERAGFTNLLGAGFVDTF 209
Query: 56 PQE----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI---VSYDQSDLDTRRSKL 108
+ + + +R K+S +L+ + S +
Sbjct: 210 RHKNGMVEGAYSWWAQRVKTSKIN-NTGWRIDYWLVSERVADRVESSIMVDSGPRQ---- 264
Query: 109 STHCPLTIEYDF 120
H P+ ++ +
Sbjct: 265 -DHTPILMDINL 275
>gi|282899308|ref|ZP_06307277.1| hypothetical protein CRC_00757 [Cylindrospermopsis raciborskii
CS-505]
gi|281195765|gb|EFA70693.1| hypothetical protein CRC_00757 [Cylindrospermopsis raciborskii
CS-505]
Length = 256
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 12/103 (11%), Positives = 21/103 (20%), Gaps = 9/103 (8%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S+ D L + ++
Sbjct: 158 NFPREDYLLLTGDFNAGPRSLERIILADNYRIKDALGNLPVESQK----TFHDFTGQAWD 213
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
N D S H P+ ++
Sbjct: 214 PRDTIYCDRRWQINQVI-----IDDQQWEGIWPSDHFPVIVKL 251
>gi|74008846|ref|XP_867663.1| PREDICTED: similar to Deoxyribonuclease I-like 1 precursor (DNase
I-like 1) (Muscle-specific DNase I-like) (DNase X) (XIB)
isoform 2 [Canis familiaris]
Length = 314
Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 29/104 (27%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ ++ GDFN S+ + + + E T + +
Sbjct: 188 QRWQSKDMILLGDFNADCASLNKKRLAELALRTEAGFRWVIADGEDTTVRASTHCAYDRI 247
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++ L + + +S H P+ +E
Sbjct: 248 VLHGERCQSLLSSAAAFNFPRSFRLNEEEALNISDHYPVEVELS 291
>gi|326430263|gb|EGD75833.1| hypothetical protein PTSG_07951 [Salpingoeca sp. ATCC 50818]
Length = 377
Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 28/132 (21%), Gaps = 25/132 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------------DFWQK 45
+ L + ++ P +I GD N + F +
Sbjct: 244 QDLLAYVQA-LEKTKPVLITGDLNVAHLDEDIYNYDAKHIAKVAGCTPREREGFTQFLNE 302
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-LDTR 104
D K + R F+ + D
Sbjct: 303 GFVDTFRHLHGNVKGNFTYWSARTHGREHDKG--LRLDYFVCSKRMTESLPKVHDSYQLH 360
Query: 105 RSKLSTHCPLTI 116
+ S HCP+
Sbjct: 361 KVLGSDHCPVGA 372
>gi|123474556|ref|XP_001320460.1| Endonuclease/Exonuclease/phosphatase family protein [Trichomonas
vaginalis G3]
gi|121903266|gb|EAY08237.1| Endonuclease/Exonuclease/phosphatase family protein [Trichomonas
vaginalis G3]
Length = 481
Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 27/118 (22%), Gaps = 2/118 (1%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E K Q + +IAGDFN + +
Sbjct: 325 EAAKNIVKQH-SSNYDIIIAGDFNSESQTTPHRWLVQNGFFDVYDSFGLSPRFTIYGASF 383
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ + V + L + + S H P+ + K N
Sbjct: 384 HKTIDFIYSTVNKIRPISILQSYNEEEILQRYVAFPH-DYFPSDHLPIVACFAMPKKN 440
>gi|12322547|gb|AAG51276.1|AC027135_17 hypothetical protein [Arabidopsis thaliana]
gi|12597833|gb|AAG60143.1|AC074360_8 hypothetical protein [Arabidopsis thaliana]
Length = 335
Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 15/137 (10%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL--------- 51
+LS+ + K + + ++AGDFN + + P
Sbjct: 200 LLSRLAQ-FKTLISDEFECTPSLLLAGDFNSIPGDMVYSYLVSGNAKPTETIEEEEAPVP 258
Query: 52 ---LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDLDTRRS 106
+ + + N ++LDY I + + S D
Sbjct: 259 LSSVYEVTRGEPKFTNCTPGFTNTLDYIFISPSDFIKPVSILQLPEPDSPDVVGFLPNHH 318
Query: 107 KLSTHCPLTIEYDFEKG 123
S H P+ E++ +
Sbjct: 319 HPSDHLPIGAEFEIRRE 335
>gi|320163246|gb|EFW40145.1| hypothetical protein CAOG_00670 [Capsaspora owczarzaki ATCC 30864]
Length = 1153
Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 13/108 (12%), Positives = 28/108 (25%), Gaps = 17/108 (15%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ V+ GD N + + + +++
Sbjct: 1063 AQPPEIRRVVVFGDLNSVPGGPEAELAQSRGLVDSWPEL-----EQAQGYTFHSRNP--- 1114
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L + S DL +S H P+ ++FE+
Sbjct: 1115 ----TQRFDWLLHSRDVTCKSISVLDL-----TVSDHKPVVASFEFEE 1153
>gi|227544091|ref|ZP_03974140.1| exodeoxyribonuclease III [Lactobacillus reuteri CF48-3A]
gi|300909790|ref|ZP_07127251.1| exodeoxyribonuclease III [Lactobacillus reuteri SD2112]
gi|227185924|gb|EEI65995.1| exodeoxyribonuclease III [Lactobacillus reuteri CF48-3A]
gi|300893655|gb|EFK87014.1| exodeoxyribonuclease III [Lactobacillus reuteri SD2112]
Length = 275
Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 12/129 (9%), Positives = 34/129 (26%), Gaps = 21/129 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDGL 51
+ + + + P + +GDFN I
Sbjct: 150 RDYLHE-LDQQKPVIASGDFNVAHEEIDLAHPATNHHSAGFTDEERTHFSKLLAAGFTDS 208
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+++ + + + +L+ + + + +D+ + H
Sbjct: 209 FRHLHPDEKGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITEAGMIDSGERR--DH 266
Query: 112 CPLTIEYDF 120
P+ +E D
Sbjct: 267 TPIILEIDL 275
>gi|224539371|ref|ZP_03679910.1| hypothetical protein BACCELL_04276 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519006|gb|EEF88111.1| hypothetical protein BACCELL_04276 [Bacteroides cellulosilyticus
DSM 14838]
Length = 370
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 32/120 (26%), Gaps = 20/120 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q + +++ + + P + GDFN +S D L F
Sbjct: 271 AEQTDSIRQLV---VASPYPVLACGDFNSLPSSYTY------AELSDVLKDGFRTSGRGY 321
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ K L Y S H P+ +E +K
Sbjct: 322 MYTYRYFKRLL-------RIDYIFHSPGIQGYRY----YSPDLDLCSDHNPVLMEMKIKK 370
>gi|57157231|dbj|BAD83645.1| deoxyribonuclease I [Anguilla japonica]
Length = 282
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 33/118 (27%), Gaps = 4/118 (3%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L ++ GDFN N + +D ++ D + +
Sbjct: 163 KEIDALYDVIVDIRARWNTDNIILLGDFNAGCNYVAGSDWQQIRLYTDKSFHWLIPDS-A 221
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR-RSKLSTHCPLTIEY 118
V N + + ++ L +S H P+ ++
Sbjct: 222 DTTVSHTNCPYDRIVATTTMMEAVVPHSASVYDYMTSLKLKLDMALAVSDHFPVEVQL 279
>gi|260598074|ref|YP_003210645.1| hypothetical protein CTU_22820 [Cronobacter turicensis z3032]
gi|260217251|emb|CBA31170.1| hypothetical protein CTU_22820 [Cronobacter turicensis z3032]
Length = 370
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 34/130 (26%), Gaps = 14/130 (10%)
Query: 3 SQQGEWLKKWADQKIKTGIPFV-IAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + + G F+ IAGDFN S ++ D +
Sbjct: 241 KAQAQRVADIYKARRDAGEQFIAIAGDFNDTPESDTL-APLLKETDLRDAFTHPAFDNGG 299
Query: 62 TCNVIKRNKSS-----------LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-S 109
+ + L V + V +D + + S
Sbjct: 300 YPGTWGNSAKNNKLDYILLSPALWERVTAGGVIRKGMWPGERPVKWDVYPELKKPQQAGS 359
Query: 110 THCPLTIEYD 119
H L ++ +
Sbjct: 360 DHAALWVDLN 369
>gi|304316058|ref|YP_003851203.1| endonuclease/exonuclease/phosphatase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777560|gb|ADL68119.1| Endonuclease/exonuclease/phosphatase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 232
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 22/113 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + K + P ++ GDFN ++ + ++ + F +
Sbjct: 136 QSQEILKIIKRL---DYPVILTGDFNETPE-----NEAYSIINHVLVDGAFSANSDYYSY 187
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ +DY + +D + LS H P+
Sbjct: 188 LDGDEPVRIDYIMHSKDI--------------SVESIKAVDCNLSDHFPVIAS 226
>gi|332828522|gb|EGK01222.1| hypothetical protein HMPREF9455_02414 [Dysgonomonas gadei ATCC
BAA-286]
Length = 263
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 21/112 (18%)
Query: 11 KWADQKI-KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ +Q++ K P ++ GDFN + +S + + + K
Sbjct: 170 DFINQQLMKIETPVILCGDFNARPDSDEIAN-GMKNWMQVSTMDFTIPAKS--------- 219
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ ++ S ++LS H P+ E
Sbjct: 220 --------PKSKIDYIFCYPASNVWKTVDSYTPV--TQLSDHLPIITTLTLE 261
>gi|159469514|ref|XP_001692908.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277710|gb|EDP03477.1| predicted protein [Chlamydomonas reinhardtii]
Length = 264
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 23/108 (21%), Gaps = 12/108 (11%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
L+ D + G V+ GDFN + + ++
Sbjct: 114 RALQHRLDGFLAAGRRLVVLGDFNISPAAAD------RAGATPRTFEPHRPDRLRDAYTC 167
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
S L + + S H PL
Sbjct: 168 WNTSSGARVNNFGSRIDLILAADGTPGADIMVD------FQGSDHAPL 209
>gi|117928188|ref|YP_872739.1| endonuclease/exonuclease/phosphatase [Acidothermus cellulolyticus
11B]
gi|117648651|gb|ABK52753.1| Endonuclease/exonuclease/phosphatase [Acidothermus cellulolyticus
11B]
Length = 249
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 16/115 (13%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L E L + + P +IAGD N + + W+++
Sbjct: 135 LRHVAELLA--VPEIAEGVDPVIIAGDVNEEPS-----GPAWRRLAERYRDAYGVAPAGR 187
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
R +D F ++ + DL R + S H P+
Sbjct: 188 GETYSARQPR--------TRIDGIFVDPRFQVIRCEVPDLPAVR-RASDHLPVLA 233
>gi|297158932|gb|ADI08644.1| putative endonuclease/exonuclease/phosphatase family protein
[Streptomyces bingchenggensis BCW-1]
Length = 808
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 31/117 (26%), Gaps = 14/117 (11%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + + V+ GD N S + D + E+
Sbjct: 702 QAKEVNTFVSGLLAKDRQARVVVLGDMNDFQFSKPLATLTEGGVLTDLINTLPAGER--Y 759
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEY 118
V N + + L+ + YD + S H P + +
Sbjct: 760 SYVYDGNA---------QTLDHILVSPTIKKPEYDVVHINAEFSDQSSDHDPQVVRF 807
>gi|300934548|ref|ZP_07149804.1| putative extracellular nuclease [Corynebacterium resistens DSM
45100]
Length = 938
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 34/127 (26%), Gaps = 20/127 (15%)
Query: 7 EWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L W + + + P + GDFN + ++ G
Sbjct: 740 RQLLTWLNAQQEWKDKPQFVMGDFNAYAKEDAI-----RVIEEGGFTNLDTHFDAGLSYQ 794
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIV-------------SYDQSDLDTRR-SKLSTH 111
SLD+ + + + + +Y+ D + S H
Sbjct: 795 FGGRLGSLDHVLANAAAMKLVTGADVWDINSDEAVNFEYSRRNYNVVDFFANDVFRASDH 854
Query: 112 CPLTIEY 118
P+ + +
Sbjct: 855 DPIKVGF 861
>gi|300173607|ref|YP_003772773.1| exodeoxyribonuclease III [Leuconostoc gasicomitatum LMG 18811]
gi|299887986|emb|CBL91954.1| exodeoxyribonuclease III [Leuconostoc gasicomitatum LMG 18811]
Length = 272
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 39/133 (29%), Gaps = 23/133 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDG 50
+ + + Q + P + +GD N I + F +D
Sbjct: 144 DAYRAYI-QTLDAKKPVIFSGDMNVAHEEIDLKNFKTNHNSAGFTNQEREKFTALLDAGF 202
Query: 51 LLIRFPQEKES---TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
Q + + +K+S +L+ + + + LDT +
Sbjct: 203 TDTLRMQNPNTPEIYTWWAQISKTSKIN-NSGWRIDYYLVSDRIAENVLNTDVLDTGLRQ 261
Query: 108 LSTHCPLTIEYDF 120
H P+++ +
Sbjct: 262 --DHAPISLTINL 272
>gi|255325901|ref|ZP_05366993.1| endonuclease/exonuclease/phosphatase [Corynebacterium
tuberculostearicum SK141]
gi|255297113|gb|EET76438.1| endonuclease/exonuclease/phosphatase [Corynebacterium
tuberculostearicum SK141]
Length = 913
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 20/131 (15%)
Query: 5 QGEW-LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + L Q+ P GDFN + DG + + +
Sbjct: 694 QAQAVLDALHKQEDWKDKPLFALGDFNTY-----THETALDVFRNDGFTVPAEKYEADPS 748
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--------------QSDLDTRRSKLS 109
+LD+ + ++ L D ++ D D + S
Sbjct: 749 YQFSGLLGTLDHVLANKVATGTLDDAQVWNINADEPVAFEYSRRNYNIVDFYDDSPFRAS 808
Query: 110 THCPLTIEYDF 120
H P+ + +
Sbjct: 809 DHDPVKVGFTL 819
>gi|260549985|ref|ZP_05824200.1| nuclease [Acinetobacter sp. RUH2624]
gi|260406977|gb|EEX00455.1| nuclease [Acinetobacter sp. RUH2624]
Length = 812
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 39/145 (26%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +W + ++ GD N + Q ++
Sbjct: 635 KAVDQIVQWLAKNPTQVPKQNALLVGDMNSYAKEAPILAFEKANYKVLLNDAKVGQGAQA 694
Query: 62 TCNVIK--------RNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSD----- 100
V +LD+ + D D + + +++ Y++
Sbjct: 695 YSYVFGVASDANGNGGAGNLDHAIADADLYPKVVRTFAWHINADEPTVLDYNEEYKTDEQ 754
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D
Sbjct: 755 KALFYGEDAYRSSDHDPVIVDLDLN 779
>gi|198274186|ref|ZP_03206718.1| hypothetical protein BACPLE_00326 [Bacteroides plebeius DSM 17135]
gi|198272861|gb|EDY97130.1| hypothetical protein BACPLE_00326 [Bacteroides plebeius DSM 17135]
Length = 289
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 4/107 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I P V+ GDFN S Q++ +
Sbjct: 186 KEIVGDQPAVVTGDFNVSDQSEAYQTITGNSFVLKDAHKTALQQEGA-SYTFHDFG--RI 242
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-LSTHCPLTIEYDF 120
+ + + + K LS H P + F
Sbjct: 243 PADSCEKIDFIFVTPQIEVQRSYIPEENREAKKFLSDHNPEIVHLSF 289
>gi|194467701|ref|ZP_03073688.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
gi|194454737|gb|EDX43634.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
Length = 275
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 12/129 (9%), Positives = 34/129 (26%), Gaps = 21/129 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDGL 51
+ + + + P + +GDFN I
Sbjct: 150 RDYLHE-LDQQKPVIASGDFNVAHEEIDLAHPATNHHSAGFTDEERTHFSKLLAAGFTDS 208
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+++ + + + +L+ + + + +D+ + H
Sbjct: 209 FRHLHPDEKGVYSWWAQRVITSKQNNSGWRIDYWLVSDRLADKITEAGMIDSGERR--DH 266
Query: 112 CPLTIEYDF 120
P+ +E D
Sbjct: 267 TPIILEIDL 275
>gi|254229945|ref|ZP_04923347.1| endonuclease/exonuclease/phosphatase family [Vibrio sp. Ex25]
gi|262394659|ref|YP_003286513.1| putative phospholipase C [Vibrio sp. Ex25]
gi|151937514|gb|EDN56370.1| endonuclease/exonuclease/phosphatase family [Vibrio sp. Ex25]
gi|262338253|gb|ACY52048.1| putative phospholipase C [Vibrio sp. Ex25]
Length = 442
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 11/127 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I + V +GDFN GD + E
Sbjct: 314 QRQFKQIRALAKSLNIPSSETVVYSGDFNVNKRKFPGDYQQMIANLSAIEPQYSGYTEST 373
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ +L ++ + + + S++ + +D + LS H
Sbjct: 374 FDPRINNFAGEALSGGENVEYLDYVMVSSEYGVKSFNDNRVDVPRTTSESLWKHYNLSDH 433
Query: 112 CPLTIEY 118
P++
Sbjct: 434 FPVSATI 440
>gi|313157364|gb|EFR56787.1| endonuclease/exonuclease/phosphatase family protein [Alistipes sp.
HGB5]
Length = 383
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 18/101 (17%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN S + ++ + + F
Sbjct: 300 IVCGDFNDTPMS-YVYRTMAKGLND------------AFSQCGSGYSHTFRGFFNTLRID 346
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
L F +SY+ +D S H P+ + N
Sbjct: 347 YVLSSEGFDALSYEVPTVDY-----SDHHPVVVRLRKNAMN 382
>gi|307544755|ref|YP_003897234.1| endonuclease/exonuclease/phosphatase [Halomonas elongata DSM 2581]
gi|307216779|emb|CBV42049.1| endonuclease/exonuclease/phosphatase [Halomonas elongata DSM 2581]
Length = 271
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 6/114 (5%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + W + P +IAGD+N + WQ + G + +
Sbjct: 79 RQLAEIWGWMSEVY-PDTPRLIAGDYNLAPDHE-----AWQMLRDQGAVPAITSGATTLS 132
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + D D N D + R +S H P+ +
Sbjct: 133 TTDGQYSNLYDNLWHDAAVLNVTGDGIVRFPELLGLTHEEARDIVSDHAPIFVT 186
>gi|229917919|ref|YP_002886565.1| Endonuclease/exonuclease/phosphatase [Exiguobacterium sp. AT1b]
gi|229469348|gb|ACQ71120.1| Endonuclease/exonuclease/phosphatase [Exiguobacterium sp. AT1b]
Length = 247
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 4/117 (3%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E ++ W + + I V+ GDFN S D +
Sbjct: 129 QMEVVRDWLSKGHQKAIE-VLCGDFNDHPQSTIYDDVSDAGWLDVTTFVGEEARPTLDVK 187
Query: 65 VIKRNKSSL---DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+SS ++ + V +R S H + +++
Sbjct: 188 HNPYLQSSHLEQPERYDWILFRSEWSELEVQHVDVFGDMRTSRDVVPSDHYGVVVDF 244
>gi|323465631|gb|ADX69318.1| Exodeoxyribonuclease A [Lactobacillus helveticus H10]
Length = 284
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 46/143 (32%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF-------------- 42
L + + W +K+ + +K+ P + +GD+N I
Sbjct: 145 LKRLADRQVWDQKYIEYLKKLNEKKPVLASGDYNCAHTEIDLKHPENNHHSAGFTDEERA 204
Query: 43 -WQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + G F + + +R +++ +L+ N +
Sbjct: 205 DFTNLLDAGFTDTFRKVNGNVEGVYSWWAQRVRTAKAN-NSGWRIDYWLVSNRIADKVVR 263
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+DT + HCP+ +E +
Sbjct: 264 SEMIDTGKRA--DHCPILLEINL 284
>gi|148271974|ref|YP_001221535.1| putative extracellular nuclease/phosphatase [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|147829904|emb|CAN00829.1| putative extracellular nuclease/phosphatase [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 711
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 35/127 (27%), Gaps = 17/127 (13%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR-FPQEKES 61
Q + + ++A + + + GDFN Q + G + +
Sbjct: 490 QAKAVARFAGELEASSGSDLVYLLGDFNAYSEEDPI-----QVLRDAGFVDLVAAKAPGE 544
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------SKLSTHC 112
SLD+ + R + ++ + + S H
Sbjct: 545 RTYSFDGEVGSLDHVLATRAGAAAVTGVGVWDINAPEWAAREYGGAATDGSSAFRSSDHD 604
Query: 113 PLTIEYD 119
P+ + D
Sbjct: 605 PVKVGLD 611
>gi|146413308|ref|XP_001482625.1| hypothetical protein PGUG_05645 [Meyerozyma guilliermondii ATCC
6260]
Length = 308
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 34/122 (27%), Gaps = 3/122 (2%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + W Q I P + GDFN + I + M ++ + T
Sbjct: 189 QESTKLIVGWL-QLIPNDYPQFLLGDFNSIASDIA-YETVADYMADTNVIANIHETGNET 246
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNS-FSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
N S +V Y+ + + S H P+T +
Sbjct: 247 TYTGFEYGDHQSVIDFIWAPSNSNKPKSGVEVVGYEVLSNNYLDFRFSDHRPVTSHFRIS 306
Query: 122 KG 123
Sbjct: 307 SN 308
>gi|126723004|ref|NP_001075923.1| nocturnin [Bos taurus]
gi|126010657|gb|AAI33609.1| CCR4 carbon catabolite repression 4-like (S. cerevisiae) [Bos
taurus]
gi|296478738|gb|DAA20853.1| CCR4 carbon catabolite repression 4-like [Bos taurus]
Length = 427
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 27/117 (23%), Gaps = 17/117 (14%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KESTCNVIKRNKSSLDY 75
IP ++ GDFN + ++ + + + R +
Sbjct: 315 AKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPPYTTWKIRTSGECRH 374
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------SKLSTHCPLTIEYDFEKG 123
V L + + S H L ++ F +
Sbjct: 375 T-----LDYIWYSRQALSVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDFTFNEE 426
>gi|6978769|ref|NP_037229.1| deoxyribonuclease-1 precursor [Rattus norvegicus]
gi|118921|sp|P21704|DNAS1_RAT RecName: Full=Deoxyribonuclease-1; AltName: Full=Deoxyribonuclease
I; Short=DNase I; Flags: Precursor
gi|15420824|gb|AAK97471.1|AF397150_1 deoxyribonuclease I variant 1 [Rattus norvegicus]
gi|15420826|gb|AAK97472.1|AF397151_1 deoxyribonuclease I variant 2 [Rattus norvegicus]
gi|2439951|gb|AAB71495.1| deoxyribonuclease I [Rattus norvegicus]
gi|58476417|gb|AAH89764.1| Deoxyribonuclease I [Rattus norvegicus]
gi|149042671|gb|EDL96308.1| deoxyribonuclease I, isoform CRA_a [Rattus norvegicus]
gi|149042672|gb|EDL96309.1| deoxyribonuclease I, isoform CRA_a [Rattus norvegicus]
gi|149042673|gb|EDL96310.1| deoxyribonuclease I, isoform CRA_a [Rattus norvegicus]
gi|149042674|gb|EDL96311.1| deoxyribonuclease I, isoform CRA_a [Rattus norvegicus]
Length = 284
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 37/119 (31%), Gaps = 5/119 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D + K G + GDFN + + + ++ + + +
Sbjct: 165 EIDALYDVYLDVRQKWGLEDIMFMGDFNAGCSYVTSSQWSSIRLRTSPIFQWLIPDS-AD 223
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEYD 119
+ + V + ++ +S + T +S H P+ +
Sbjct: 224 TTATSTHCAYDRIVVAGALLQAAVVPSSAVPFDFQAEYRLTNQMAEAISDHYPVEVTLR 282
>gi|327490155|gb|EGF21943.1| exodeoxyribonuclease [Streptococcus sanguinis SK1058]
gi|332367237|gb|EGJ44972.1| exodeoxyribonuclease [Streptococcus sanguinis SK1059]
Length = 322
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 25/139 (17%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQK 45
+Q W K+A+ + P + GD+N I + +
Sbjct: 188 ERQV-WDAKYAEYLASLDEQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTN 246
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N + +
Sbjct: 247 LLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMI 305
Query: 102 DTRRSKLSTHCPLTIEYDF 120
D+ + H P+ +E +
Sbjct: 306 DSGARQ--DHTPIVMEIEL 322
>gi|254420344|ref|ZP_05034068.1| endonuclease/exonuclease/phosphatase family [Brevundimonas sp.
BAL3]
gi|196186521|gb|EDX81497.1| endonuclease/exonuclease/phosphatase family [Brevundimonas sp.
BAL3]
Length = 245
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 33/119 (27%), Gaps = 18/119 (15%)
Query: 3 SQQGEWLKK--WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
Q L W P ++AGDFN + +++ L+ +
Sbjct: 137 RLQAAALAGDGWLA---GCTGPTLLAGDFNATSITRPYQT-LARRLGDCQRLLNLKPSVK 192
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + I +D S H PL I+++
Sbjct: 193 TFPS-----------GFPAIRIDHCFVSPEIRITGVK-ADFSPLARVASDHLPLIIDFE 239
>gi|149277549|ref|ZP_01883690.1| hypothetical protein PBAL39_05158 [Pedobacter sp. BAL39]
gi|149231782|gb|EDM37160.1| hypothetical protein PBAL39_05158 [Pedobacter sp. BAL39]
Length = 278
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 11/114 (9%), Positives = 28/114 (24%), Gaps = 7/114 (6%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + + ++ I P + GD N S + D + +
Sbjct: 168 QESAKLILRKINE-IAGNSPALFMGDLNGSRTSEWYLALANSGLIKDVHSAVKYPYENNG 226
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + + + F+ + S H P+
Sbjct: 227 S-----SNGFKIPKGMGV-IDHIFMSKQFTAQKWGILTDTYFGKYPSDHFPVLA 274
>gi|116496201|ref|YP_807935.1| metal-dependent hydrolase [Lactobacillus casei ATCC 334]
gi|116106351|gb|ABJ71493.1| Metal-dependent hydrolase [Lactobacillus casei ATCC 334]
Length = 355
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 44/133 (33%), Gaps = 18/133 (13%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ ++ L K+ +Q K G ++AGD+N ++ + +D + + +
Sbjct: 226 QQAQFTKLFKYIEQAYKQGNYVMVAGDYNHRLLKDTAEIFHTKDLDETWTHLFPKSKLPA 285
Query: 62 TCN-------------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ V ++ +++ + S +
Sbjct: 286 GFHIPTMGLAKAAVPSVRALDQPYQPGKSFVTLIDGYILSPNIKAESVHVVST---GFQY 342
Query: 109 STHCPLTIEYDFE 121
S H P+ +++ +
Sbjct: 343 SDHNPVVLKFQLQ 355
>gi|330888867|gb|EGH21528.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv. mori
str. 301020]
Length = 261
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 34/118 (28%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ L + +++ G P ++AGDFN + L E+
Sbjct: 160 RQQLNLLAELM-ERLPEGEPVIVAGDFND-------WRQRADALLEGTGLHEVFVERFGA 211
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S I N+ S S S LS H PL +E
Sbjct: 212 P------AKSFPARWPLLRLDRIYIRNATSHRPKVLSSRPW--SHLSDHAPLAVELTL 261
>gi|260557567|ref|ZP_05829782.1| nuclease [Acinetobacter baumannii ATCC 19606]
gi|260409193|gb|EEX02496.1| nuclease [Acinetobacter baumannii ATCC 19606]
Length = 812
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 39/145 (26%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +W + ++ GD N + Q ++
Sbjct: 635 KAVDQIVQWLAKNPTQVPKQNALLVGDMNSYAKEAPILAFEKANYKVLLNDAKVGQGAQA 694
Query: 62 TCNVIK--------RNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSD----- 100
V +LD+ + D D + + +++ Y++
Sbjct: 695 YSYVFGVASDANGNGGAGNLDHAIADADLYPKVVRTFAWHINADEPTVLDYNEEYKTDEQ 754
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D
Sbjct: 755 KALFYGEDAYRSSDHDPVIVDLDLN 779
>gi|170649635|gb|ACB21222.1| deoxyribonuclease I-like 1 precursor (predicted) [Callicebus
moloch]
Length = 302
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 12/103 (11%), Positives = 30/103 (29%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
++ GDFN S+ ++ + + E T + + +
Sbjct: 175 EDVILLGDFNADCASLTKKRLDKLELRTEPGFHWVIADGEDTTVRASTHCAYDRIVLHGE 234
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ L + + +S H P+ +E +
Sbjct: 235 RCRSLLDTAAAFDFPTSFQLTEEEALNISDHYPVEVELKLSQA 277
>gi|312882308|ref|ZP_07742052.1| hypothetical protein VIBC2010_09642 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370021|gb|EFP97529.1| hypothetical protein VIBC2010_09642 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 456
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 10/119 (8%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSI-GDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
++I + + AGDFN NS + ++ D +E + + ++
Sbjct: 333 LTKQIPSNEVVIFAGDFNIDKNSDFLEYLLMLATLEVDPPAYDGHREATFDPTINRYARA 392
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQ---------SDLDTRRSKLSTHCPLTIEYDFE 121
+ L+ + + S LS H + E++F+
Sbjct: 393 NYSGGETVEYLDYVLVSSEHLRARKNINTVQLKQRVSYATWDDWHLSDHFAVNGEFEFD 451
>gi|289625360|ref|ZP_06458314.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289647509|ref|ZP_06478852.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330867768|gb|EGH02477.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330875589|gb|EGH09738.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
glycinea str. race 4]
gi|331011241|gb|EGH91297.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 261
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ L + +++ G P ++AGDFN + L E+
Sbjct: 160 RQQLNLLAELM-ERLPEGEPVIVAGDFND-------WRQRADALLEGTGLHEVFVERFGA 211
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + N+ S S S LS H PL +E
Sbjct: 212 P------AKSFPARWPLLRLDRIYVRNATSHRPKVLSSRPW--SHLSDHAPLAVELTL 261
>gi|151554255|gb|AAI49516.1| CCRN4L protein [Bos taurus]
Length = 361
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 27/117 (23%), Gaps = 17/117 (14%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KESTCNVIKRNKSSLDY 75
IP ++ GDFN + ++ + + + R +
Sbjct: 249 AKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPPYTTWKIRTSGECRH 308
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------SKLSTHCPLTIEYDFEKG 123
V L + + S H L ++ F +
Sbjct: 309 T-----LDYIWYSRQALSVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDFTFNEE 360
>gi|68477573|ref|XP_717099.1| potential Endonuclease/Exonuclease/Phosphatase [Candida albicans
SC5314]
gi|68477734|ref|XP_717019.1| potential Endonuclease/Exonuclease/Phosphatase [Candida albicans
SC5314]
gi|46438715|gb|EAK98041.1| potential Endonuclease/Exonuclease/Phosphatase [Candida albicans
SC5314]
gi|46438798|gb|EAK98123.1| potential Endonuclease/Exonuclease/Phosphatase [Candida albicans
SC5314]
Length = 363
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 22/130 (16%), Gaps = 30/130 (23%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P + GDFN + N +LI
Sbjct: 236 NDYPSFLCGDFNTEPNDEPYHILTKAGFKDGKILIDKKSAYGFET----TFTGFDINNEP 291
Query: 79 DRDNKNFLIDNSFSIVS--------------------------YDQSDLDTRRSKLSTHC 112
+ +S + S H
Sbjct: 292 ISRIDYIWSPSFTRTLSNSENDTNQDSDDDNDNDKSYEVTLKQFGILSNWFNGHHFSDHR 351
Query: 113 PLTIEYDFEK 122
P+ Y+ K
Sbjct: 352 PVVSTYELRK 361
>gi|255074455|ref|XP_002500902.1| predicted protein [Micromonas sp. RCC299]
gi|226516165|gb|ACO62160.1| predicted protein [Micromonas sp. RCC299]
Length = 301
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 27/135 (20%), Gaps = 31/135 (22%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDT-----------------DDFWQKM---------DP 48
Q G P V GD N I D F + +
Sbjct: 171 QASAGGKPVVYCGDLNVANEPIDLWGNHAANSLASGYTPEERDSFKRLLLGPIRDGGAGL 230
Query: 49 DGLLIRFP-QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ ++ R + L+ S
Sbjct: 231 VDTFREAHGTDAKAFTYFSYRAGARPRNRGW--RIDYALVSESLRGE--VHDAFIRGDVG 286
Query: 108 LSTHCPLTIEYDFEK 122
S HCP+ + +
Sbjct: 287 GSDHCPIGVVVKLRE 301
>gi|116249399|ref|YP_765240.1| hypothetical protein pRL120737 [Rhizobium leguminosarum bv. viciae
3841]
gi|115254049|emb|CAK12446.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 242
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 28/119 (23%), Gaps = 16/119 (13%)
Query: 4 QQGEWLKK--WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W +P ++ GDFN +S + +
Sbjct: 137 RQMTTLLNPGWLRGTADEPLPTILCGDFNAIPSSATYR-LAARSLKDVQ---LAGGAAPR 192
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + + S H PL E F
Sbjct: 193 ATFPSRY---------PLMRLDHIFVTDDLIVKKAAVL-ENRLTRIASDHLPLLAEIGF 241
>gi|169633174|ref|YP_001706910.1| putative extracellular nuclease [Acinetobacter baumannii SDF]
gi|169151966|emb|CAP00827.1| putative extracellular nuclease [Acinetobacter baumannii]
Length = 812
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 39/145 (26%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +W + ++ GD N + Q ++
Sbjct: 635 KAVDQIVQWLAKNPTQVPKQNALLVGDMNSYAKEAPILAFEKANYKVLLNDTKVGQGAQA 694
Query: 62 TCNVIK--------RNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSD----- 100
V +LD+ + D D + + +++ Y++
Sbjct: 695 YSYVFGVASDANGNGGAGNLDHAIADADLYPKVVRTFAWHINADEPTVLDYNEEYKTDEQ 754
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D
Sbjct: 755 KALFYGEDAYRSSDHDPVIVDLDLN 779
>gi|62085846|gb|AAX63314.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 32/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 263 ILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085838|gb|AAX63310.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 32/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 263 ILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085780|gb|AAX63281.1| DNA lyase [Beauveria sp. ARSEF 32]
Length = 579
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 32/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMSEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 263 ILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085820|gb|AAX63301.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 32/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 263 ILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085836|gb|AAX63309.1| DNA lyase [Cordyceps brongniartii]
Length = 579
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 32/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 263 ILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085802|gb|AAX63292.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 32/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 263 ILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|68536781|ref|YP_251486.1| putative exodeoxyribonuclease [Corynebacterium jeikeium K411]
gi|260579135|ref|ZP_05847027.1| exodeoxyribonuclease [Corynebacterium jeikeium ATCC 43734]
gi|68264380|emb|CAI37868.1| putative exodeoxyribonuclease [Corynebacterium jeikeium K411]
gi|258602734|gb|EEW16019.1| exodeoxyribonuclease [Corynebacterium jeikeium ATCC 43734]
Length = 336
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/112 (14%), Positives = 34/112 (30%), Gaps = 11/112 (9%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDP--------DGLLIRFPQEKESTCNVIKRN 69
+ G P +AGDF ++ + D + P + R
Sbjct: 223 RNGNPAGVAGDFFGAVDYKPGDLAAARLAAGAAEEPHYFDVMRRVLPDQAGPYSWWTYRG 282
Query: 70 KSSLDYFVIDRDNKNF---LIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ D + ++D + + + + S H P+ +EY
Sbjct: 283 QAFDTDAGWRIDLQVATRGMLDRALTANNVWVDKAAAYDQRWSDHSPVLVEY 334
>gi|254384157|ref|ZP_04999501.1| large secreted protein [Streptomyces sp. Mg1]
gi|194343046|gb|EDX24012.1| large secreted protein [Streptomyces sp. Mg1]
Length = 613
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 28/118 (23%), Gaps = 14/118 (11%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + + + + GD N S + E+ S
Sbjct: 506 QAQAVNGFVKELLAADKNANVIALGDINDFEFSATANALADGGALYPAIKSLPKAERYSY 565
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYD 119
+ L + +YD ++ S H P + +
Sbjct: 566 VY-----------QGNAQVLDQILTSPAIKTFTYDSVHINAEFSAQNSDHDPQVLRFR 612
>gi|120612279|ref|YP_971957.1| endonuclease/exonuclease/phosphatase [Acidovorax citrulli AAC00-1]
gi|120590743|gb|ABM34183.1| Endonuclease/exonuclease/phosphatase [Acidovorax citrulli AAC00-1]
Length = 252
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 18/117 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E L+++ +++ G P V+AGDFN + L + E +
Sbjct: 154 RQVEQLQRFVAREVPPGAPLVVAGDFND-------WGRQVKHALAAFGLREYEGEPRALT 206
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + ++S H PL E+
Sbjct: 207 YP---------ARLPLVQLDHVYVR-GMEPMGLHVPRG-RIWWRMSDHLPLIAEFRL 252
>gi|24214114|ref|NP_711595.1| hypothetical protein LA_1413 [Leptospira interrogans serovar Lai
str. 56601]
gi|24195001|gb|AAN48613.1| hypothetical protein LA_1413 [Leptospira interrogans serovar Lai
str. 56601]
Length = 360
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 34/135 (25%), Gaps = 19/135 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKI----------------NSIGDTDDFWQKMD 47
+Q E + + G +V+ GDFN + + + + +
Sbjct: 229 RQVETITGLLKELDLAGHYWVLGGDFNLIPPGFDRKSMHPNGAFFYSDEQEIKPLFDRWN 288
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
++ N ++ DR ++ Y
Sbjct: 289 SAVPFKILNGPEKEKYYTYYPNDPAI--GKPDRTIDYIFYSSNLKQSGYKVD-QKDILWT 345
Query: 108 LSTHCPLTIEYDFEK 122
+S H P Y +
Sbjct: 346 ISDHFPQIGTYRMSQ 360
>gi|296470685|gb|DAA12800.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Bos taurus]
Length = 514
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 30/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLL 52
L+ A+ + G +I GD N I D + G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSNLGCE 235
Query: 53 IRFPQEKESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
S + L D + I ++ QS
Sbjct: 236 SGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVLGDRTLVIDTF-QSSF 294
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 295 LLPEVMGSDHCPVGAVLS 312
>gi|149377356|ref|ZP_01895101.1| extracellular nuclease, putative [Marinobacter algicola DG893]
gi|149358368|gb|EDM46845.1| extracellular nuclease, putative [Marinobacter algicola DG893]
Length = 588
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 32/133 (24%), Gaps = 15/133 (11%)
Query: 3 SQQG-EWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+Q + +W +I GD N +
Sbjct: 456 REQATRAIIRWTHALPHPNGLAGTMITGDMNAYAREAPLQLLEAAGFINTVHHFHGCTDT 515
Query: 60 --ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR----------SK 107
+ T +LDY ++ ++ ++ D+ + +
Sbjct: 516 SCKHTSYRYHGRSGTLDYSLVSNGLLPQIVGAHTWSINSDEPRALGYKGPVTLPTGQPWR 575
Query: 108 LSTHCPLTIEYDF 120
S H P+ +
Sbjct: 576 SSDHNPVITDLSL 588
>gi|61554419|gb|AAX46554.1| apurinic/apyrimidinic endonuclease 2 [Bos taurus]
Length = 407
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 30/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLL 52
L+ A+ + G +I GD N I D + G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSNLGCE 235
Query: 53 IRFPQEKESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
S + L D + I ++ QS
Sbjct: 236 SGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVLGDRTLVIDTF-QSSF 294
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 295 LLPEVMGSDHCPVGAVLS 312
>gi|45658178|ref|YP_002264.1| hypothetical protein LIC12332 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|45601420|gb|AAS70901.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 360
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 34/135 (25%), Gaps = 19/135 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKI----------------NSIGDTDDFWQKMD 47
+Q E + + G +V+ GDFN + + + + +
Sbjct: 229 RQVETITGLLKELDLAGHYWVLGGDFNLLPPGFDRKSMHPNGAFFYSDEQEIKPLFDRWN 288
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
++ N ++ DR ++ Y
Sbjct: 289 SAVPFKILNGPEKEKYYTYYPNDPAI--GKPDRTIDYIFYSSNLKQSGYKVD-QKDILWT 345
Query: 108 LSTHCPLTIEYDFEK 122
+S H P Y +
Sbjct: 346 ISDHFPQIGTYRMSQ 360
>gi|62751813|ref|NP_001015577.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Bos taurus]
gi|73921675|sp|Q5E9N9|APEX2_BOVIN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=APEX nuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2; Short=AP
endonuclease 2
gi|59858127|gb|AAX08898.1| apurinic/apyrimidinic endonuclease 2 [Bos taurus]
Length = 514
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 30/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLL 52
L+ A+ + G +I GD N I D + G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNMECFEEDPGRKWMDGLLSNLGCE 235
Query: 53 IRFPQEKESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
S + L D + I ++ QS
Sbjct: 236 SGSHMGPFIDSYRCFQPKQKGAFTCWSTVSGARHLNYGSRLDYVLGDRTLVIDTF-QSSF 294
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 295 LLPEVMGSDHCPVGAVLS 312
>gi|296414217|ref|XP_002836799.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295631638|emb|CAZ80990.1| unnamed protein product [Tuber melanosporum]
Length = 610
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 39/121 (32%), Gaps = 10/121 (8%)
Query: 3 SQQGEW--LKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
+Q + + + + + +IAGDFN + + D ++
Sbjct: 493 DRQAQAESVASFVSKILAEDRTAKIIIAGDFNEFTYVSPMR--AFDGIAYDLDVVTSTPV 550
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+E + N LD+ ++ + + +T ++S H P +
Sbjct: 551 EERYTYLFDMNSQQLDHMLVSYEITQRD----PEYEHVHINTWNTLEGEVSDHDPSVAKL 606
Query: 119 D 119
+
Sbjct: 607 N 607
>gi|213625354|gb|AAI70416.1| CCR4 carbon catabolite repression 4-like, nocturnin [Xenopus
laevis]
gi|213626931|gb|AAI70414.1| CCR4 carbon catabolite repression 4-like, nocturnin [Xenopus
laevis]
Length = 388
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 27/109 (24%), Gaps = 7/109 (6%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KESTCNVIKRNKSS----LD 74
P +I GDFN ++ + ++ + R LD
Sbjct: 275 PLIICGDFNADPTEEVYKRFASSSLNLNSAYKLLSEDGDSEPPYTTWKIRTTGESCHTLD 334
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
Y + + + S H L ++ F +
Sbjct: 335 YIWYSQHALRVNAALGLPTEEQIGPNRLPSFNYPSDHLSLVCDFSFNED 383
>gi|115378940|ref|ZP_01466074.1| endonuclease/exonuclease/phosphatase family [Stigmatella aurantiaca
DW4/3-1]
gi|310821513|ref|YP_003953871.1| endonuclease/exonuclease/phosphatase domain-containing protein
[Stigmatella aurantiaca DW4/3-1]
gi|115364057|gb|EAU63158.1| endonuclease/exonuclease/phosphatase family [Stigmatella aurantiaca
DW4/3-1]
gi|309394585|gb|ADO72044.1| Endonuclease/exonuclease/phosphatase domain protein [Stigmatella
aurantiaca DW4/3-1]
Length = 319
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 6/117 (5%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSI--GDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
LK + D + P V+ GD+N +++ +Q D FP + S V
Sbjct: 205 ALKAYLDSTYPS-TPVVVLGDWNDDVDTSITSGKASPYQNFVSDAQDYFFPTKALSDAKV 263
Query: 66 IKR--NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+D+ ++ + K+ + S V + + + + + H P+ Y +
Sbjct: 264 ASTASYPDMIDHQLVTNELKSLYVAGSAK-VYRVDTYISSYATTTTDHFPVLTRYAW 319
>gi|72160551|ref|YP_288208.1| metal-dependent hydrolase [Thermobifida fusca YX]
gi|71914283|gb|AAZ54185.1| similar to Metal-dependent hydrolase [Thermobifida fusca YX]
Length = 673
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 34/119 (28%), Gaps = 20/119 (16%)
Query: 5 QGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q L ++ G P ++ GDFN + N W++M+ GL + + S
Sbjct: 568 QAADLADIIIKRRSAHGRPVIVGGDFNFERN-----GAAWREMERAGLYDALFRVRPSPT 622
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
LD+ + SY S H + E
Sbjct: 623 FPADDPDKELDHIFATAGL--VREQGAVLPASY------------SDHVAVMAVLRLES 667
>gi|325105102|ref|YP_004274756.1| Endonuclease/exonuclease/phosphatase [Pedobacter saltans DSM 12145]
gi|324973950|gb|ADY52934.1| Endonuclease/exonuclease/phosphatase [Pedobacter saltans DSM 12145]
Length = 278
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 22/117 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L P V+AGD+N S + + ++
Sbjct: 184 QANTLVDIIKSL---NYPLVLAGDWNALPTSQTI-NILKKALN-------PTCTDCPYTF 232
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + ++DY + K + +Y S H PL ++ + +
Sbjct: 233 PMNKPDRTIDYIMYKPAEKFKVKSLKVVNETY-----------ASDHLPLVVDLEIK 278
>gi|223936857|ref|ZP_03628766.1| Endonuclease/exonuclease/phosphatase [bacterium Ellin514]
gi|223894426|gb|EEF60878.1| Endonuclease/exonuclease/phosphatase [bacterium Ellin514]
Length = 273
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 16/108 (14%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
K K +P + GDFN S + +D E E ++ + +DY
Sbjct: 181 KKKAELPVIFCGDFNDVPGSPT-YEQMSALLDDSWK---LIGEGEGWTIPAEKPRRRIDY 236
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ S+ S H PL +E+ G
Sbjct: 237 I-------WISKKGPIIPLRAWVP-----ASEASDHRPLVVEFQLPTG 272
>gi|329955242|ref|ZP_08296199.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
clarus YIT 12056]
gi|328526241|gb|EGF53260.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
clarus YIT 12056]
Length = 370
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 19/104 (18%), Gaps = 17/104 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
I P ++ GDFN +S L F + K
Sbjct: 284 IAAPHPVLVCGDFNSLPSSYTYRR------LSGFLEDGFKTGGHGYMYTYRYGKR----- 332
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S H P+ +
Sbjct: 333 --MLRIDYAFHSPELEC----IDYYSPDLDLCSDHNPVIFTVKY 370
>gi|37520069|ref|NP_923446.1| hypothetical protein glr0500 [Gloeobacter violaceus PCC 7421]
gi|35211061|dbj|BAC88441.1| glr0500 [Gloeobacter violaceus PCC 7421]
Length = 1019
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 31/118 (26%), Gaps = 11/118 (9%)
Query: 5 QGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + ++ GD N S + + + P + +
Sbjct: 824 QATAVNSFVQSLLALDAKASVIVLGDLNDFQFSPPLATLQQGGILSNLIDAVSPAD--AY 881
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N LD+ ++ + + S LS H P D
Sbjct: 882 TFNFQGNSQVLDHILLSGSLAAGAEIDIVHLDS-------EFADALSDHDPPLARLDL 932
>gi|298706356|emb|CBJ29365.1| potential endonuclease [Ectocarpus siliculosus]
Length = 696
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 31/135 (22%), Gaps = 24/135 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKIN---------SIGDTDDFWQKMDPD---------- 49
L+ + G V+ GD N + W K
Sbjct: 191 LEARIFEIRSRGRGVVLVGDLNACASQLDHGFTMTDSEFYASNWSKWIRGMLGLGSPEPP 250
Query: 50 ---GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+++S + D + F+ + D+
Sbjct: 251 RLVDCFRHLHPDRKSAFTCWNTQTGARDN-NYGTRIDYIIAGTDFADRALRACDIMP-DF 308
Query: 107 KLSTHCPLTIEYDFE 121
S HCP+ + F
Sbjct: 309 LGSDHCPVRARFAFP 323
>gi|189466215|ref|ZP_03015000.1| hypothetical protein BACINT_02585 [Bacteroides intestinalis DSM
17393]
gi|189434479|gb|EDV03464.1| hypothetical protein BACINT_02585 [Bacteroides intestinalis DSM
17393]
Length = 370
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 34/120 (28%), Gaps = 20/120 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q + +++ A + + V+ GDFN +S D L F
Sbjct: 271 AEQTDSIRQLA---LASPYSVVVCGDFNSLPSSYTY------AELSDILKDGFRTSGRGY 321
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ K L + Y S H P+ +E +K
Sbjct: 322 MYTFRYFKRLL-------RIDYIFHSPAIQGYRY----YSPDLDLCSDHNPVLMEMKIKK 370
>gi|242064922|ref|XP_002453750.1| hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
gi|241933581|gb|EES06726.1| hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]
Length = 738
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 32/117 (27%), Gaps = 7/117 (5%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRK--INSIGDTDDFWQKMDPDGLLIRFPQE----KEST 62
+++ Q+ +P + GDFN + Q E S
Sbjct: 78 MRRLFTQQENNPMPLLCTGDFNEILFHHEKEGGTIRSQACLDRFKEALEFCELEDLGFSG 137
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
RNK + I + + ++ + + S H P+ +
Sbjct: 138 DVFTWRNKQYREENYIHERLDRAVANGTWRE-RFPLVHVKNGDHFHSDHRPIVVSLQ 193
>gi|91785939|ref|YP_546891.1| endonuclease/exonuclease/phosphatase [Polaromonas sp. JS666]
gi|91695164|gb|ABE41993.1| Endonuclease/exonuclease/phosphatase [Polaromonas sp. JS666]
Length = 267
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 32/117 (27%), Gaps = 14/117 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E L + I P V+AGDFN + G ++
Sbjct: 165 QQMEMLCDLVRKDIPPHAPVVVAGDFND-------WRLRAHTLLESG-ADLHEVFVQANG 216
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + N+ S LS H PL E +
Sbjct: 217 QAARTFPA----RLPLLRLDRIYVRNAIGHAPVVLPSRPW--SHLSDHAPLAAEIEL 267
>gi|172038845|ref|YP_001805346.1| hypothetical protein cce_3932 [Cyanothece sp. ATCC 51142]
gi|171700299|gb|ACB53280.1| unknown [Cyanothece sp. ATCC 51142]
Length = 677
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 8/122 (6%)
Query: 3 SQQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + + + ++AGD N I+S T + L + +
Sbjct: 320 RKQATVVGNFVKALLSEDSKANVIVAGDLNDVIDSEPITILERSGL---TNLSKLLPPSD 376
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
N LDY ++ + + LS H + ++
Sbjct: 377 RYTYEFNNNLQQLDYILVSDNLFTTGKS---QFDIVHVNVNQPSNLALSDHDVVLGQFPL 433
Query: 121 EK 122
+
Sbjct: 434 PE 435
>gi|315502378|ref|YP_004081265.1| endonuclease/exonuclease/phosphatase [Micromonospora sp. L5]
gi|315408997|gb|ADU07114.1| Endonuclease/exonuclease/phosphatase [Micromonospora sp. L5]
Length = 675
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 39/118 (33%), Gaps = 20/118 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + +A + G P V+ GD N + + D + + GL+ +
Sbjct: 578 EQAGEVAAFAG-RYANGRPLVLGGDLNTEPD-----DPAFAEFTRAGLVDALAAARPLRT 631
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ ++ +D+ + + R++ S H P+T+
Sbjct: 632 SPADEPRTQIDHVFVSPGLTAGEV--------------RAPRTEASDHLPVTLTVTLP 675
>gi|42562445|ref|NP_174435.2| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
thaliana]
gi|332193241|gb|AEE31362.1| carbon catabolite repressor protein 4-like 4 [Arabidopsis thaliana]
Length = 388
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 15/137 (10%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL--------- 51
+LS+ + K + + ++AGDFN + + P
Sbjct: 253 LLSRLAQ-FKTLISDEFECTPSLLLAGDFNSIPGDMVYSYLVSGNAKPTETIEEEEAPVP 311
Query: 52 ---LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDLDTRRS 106
+ + + N ++LDY I + + S D
Sbjct: 312 LSSVYEVTRGEPKFTNCTPGFTNTLDYIFISPSDFIKPVSILQLPEPDSPDVVGFLPNHH 371
Query: 107 KLSTHCPLTIEYDFEKG 123
S H P+ E++ +
Sbjct: 372 HPSDHLPIGAEFEIRRE 388
>gi|255535973|ref|YP_003096344.1| hypothetical protein FIC_01839 [Flavobacteriaceae bacterium
3519-10]
gi|255342169|gb|ACU08282.1| hypothetical protein FIC_01839 [Flavobacteriaceae bacterium
3519-10]
Length = 314
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 32/133 (24%), Gaps = 20/133 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ---KMDPDGLLIRFPQEKESTC 63
E L + + I G +I GDFN + + + +
Sbjct: 180 EQLHQVVTEYIANGEAVIICGDFNANPDEDTVKKLLYDKDFMKVLHNPFGELLSANKFST 239
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------------- 108
+ D + + + L R KL
Sbjct: 240 YHRANGLLFDQIILSDGFYRTGFPLKFKTAKIFSYEKLRVRDRKLAARPAKTFAGTRYLG 299
Query: 109 --STHCPLTIEYD 119
S H P+ E++
Sbjct: 300 GYSDHFPVITEFE 312
>gi|79605875|ref|NP_973943.2| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
thaliana]
gi|332193243|gb|AEE31364.1| carbon catabolite repressor protein 4-like 4 [Arabidopsis thaliana]
Length = 358
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 15/137 (10%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL--------- 51
+LS+ + K + + ++AGDFN + + P
Sbjct: 223 LLSRLAQ-FKTLISDEFECTPSLLLAGDFNSIPGDMVYSYLVSGNAKPTETIEEEEAPVP 281
Query: 52 ---LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDLDTRRS 106
+ + + N ++LDY I + + S D
Sbjct: 282 LSSVYEVTRGEPKFTNCTPGFTNTLDYIFISPSDFIKPVSILQLPEPDSPDVVGFLPNHH 341
Query: 107 KLSTHCPLTIEYDFEKG 123
S H P+ E++ +
Sbjct: 342 HPSDHLPIGAEFEIRRE 358
>gi|256426118|ref|YP_003126771.1| endonuclease/exonuclease/phosphatase [Chitinophaga pinensis DSM
2588]
gi|256041026|gb|ACU64570.1| Endonuclease/exonuclease/phosphatase [Chitinophaga pinensis DSM
2588]
Length = 308
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 35/146 (23%), Gaps = 33/146 (22%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ + + + + IP ++ GDFN S T + D + E+
Sbjct: 169 AESAKLVMDKVRK-MAGNIPTILTGDFNVDQQSESYTLINTSGLLKDAYETTAIRYAENG 227
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR----------------- 105
+ D + + F + Y R
Sbjct: 228 T-----FNAFNPNSKTDSRIDHIFLTRQFRVEKYGILTDTYRGPVVTENGDDKVSSADFP 282
Query: 106 ----------SKLSTHCPLTIEYDFE 121
S H P+ ++
Sbjct: 283 KEVSLKKYVARVPSDHFPVMAIITWK 308
>gi|91206582|sp|Q2QDF1|DNSL1_CERAE RecName: Full=Deoxyribonuclease-1-like 1; AltName: Full=DNase X;
AltName: Full=Deoxyribonuclease I-like 1; Short=DNase
I-like 1; Flags: Precursor
gi|73921488|gb|AAZ94274.1| DNase X [Chlorocebus aethiops]
Length = 302
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 30/105 (28%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN S+ ++ + + E T + + +
Sbjct: 173 QSKDVILLGDFNADCASLTKKRLDKLELRTEPGFHWVIADGEDTTVRASTHCAYDRIVLH 232
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ L + + +S H P+ +E +
Sbjct: 233 GERCRSLLHTAAAFDFPTTFQLTEEEALNISDHYPVEVELKLSQA 277
>gi|325285062|ref|YP_004260852.1| Endonuclease I [Cellulophaga lytica DSM 7489]
gi|324320516|gb|ADY27981.1| Endonuclease I [Cellulophaga lytica DSM 7489]
Length = 1889
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 33/121 (27%), Gaps = 6/121 (4%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD-PDGLLIRFPQEKESTCN 64
E LK D + ++ GD+N +++ S
Sbjct: 1483 VEVLKDTLDVQYA-DKKLILLGDYNDDVDTTVADITTTTTSSFNAYATDEVNYNIVSKTL 1541
Query: 65 VIKRNKSSLDYFVIDRDN-KNFLIDNSFSIVSYDQSDLDTRRSKL---STHCPLTIEYDF 120
+ +S + + +++++ S S H P++ +
Sbjct: 1542 SDQDFRSYVFRENMIDHITITNELNDNYIAESARVHYEFYDSDYPNTVSDHFPVSARFQL 1601
Query: 121 E 121
+
Sbjct: 1602 K 1602
>gi|302792615|ref|XP_002978073.1| hypothetical protein SELMODRAFT_108336 [Selaginella moellendorffii]
gi|300154094|gb|EFJ20730.1| hypothetical protein SELMODRAFT_108336 [Selaginella moellendorffii]
Length = 334
Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 29/134 (21%), Gaps = 25/134 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------------- 49
Q+ + ++AGDFN + +
Sbjct: 201 ISQEFNSNPVVLVAGDFNSTPGDRVYNYITSGRRNSGPDVELSSFKVPDLESLKVPAIPL 260
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDLDTRRSK 107
L Q + + N +LDY + D
Sbjct: 261 DSLYAAAQGEPAFTNCTPDFTGTLDYIFFSPSASMRPKTILEVPRPDAPDVKGGLPNHFH 320
Query: 108 LSTHCPLTIEYDFE 121
S H P+ ++
Sbjct: 321 PSDHLPIGADFSLS 334
>gi|226225952|ref|YP_002760058.1| hypothetical membrane protein [Gemmatimonas aurantiaca T-27]
gi|226089143|dbj|BAH37588.1| hypothetical membrane protein [Gemmatimonas aurantiaca T-27]
Length = 465
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 13/109 (11%), Positives = 26/109 (23%), Gaps = 16/109 (14%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ + P V+ GDFN +W + F
Sbjct: 369 ASYWSARHANTTPIVVVGDFNM-PVESSIFRAYWSALSSA-----FDAGGRGFGFTKH-- 420
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + L + ++ S S H P+ +
Sbjct: 421 ----EGRWLRIRIDHVLFAPQW----FETSGAWVGNDVGSDHRPVIADL 461
>gi|146419034|ref|XP_001485482.1| hypothetical protein PGUG_03211 [Meyerozyma guilliermondii ATCC
6260]
Length = 290
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 6/117 (5%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + + + G P + GDFN K S Q + P K
Sbjct: 178 ESVRDIITYVN-HTRQGSPVFLGGDFNAKRTSAPYKYVATQM----TPALIAPDPKGVDN 232
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS-YDQSDLDTRRSKLSTHCPLTIEYD 119
N D F S V Y+ + +S H P+ ++
Sbjct: 233 KEKSTNSGFQFNHPKTIDFIFFQDHGSKVKVDLYEILSSTSGNVVISDHSPVIADFS 289
>gi|116198337|ref|XP_001224980.1| hypothetical protein CHGG_07324 [Chaetomium globosum CBS 148.51]
gi|88178603|gb|EAQ86071.1| hypothetical protein CHGG_07324 [Chaetomium globosum CBS 148.51]
Length = 261
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 32/126 (25%), Gaps = 9/126 (7%)
Query: 3 SQQGEWL-----KKWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP 56
+Q L + W + P GDFN + + P
Sbjct: 129 REQSAHLLLKLARTWCGEGAFDLSAPVFFGGDFNSTPTGRAYKVLTEPGIGMKDIFNILP 188
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQ-SDLDTRRSKLSTHCP 113
+ + I D + + S +S+ + LS H P
Sbjct: 189 ADAKYGNEEITFTSFGDDPNQHPARIDFLFVRDLGSLRFLSFSILPNRFDEGVYLSDHRP 248
Query: 114 LTIEYD 119
+ + +
Sbjct: 249 VVADVE 254
>gi|148556689|ref|YP_001264271.1| exodeoxyribonuclease III Xth [Sphingomonas wittichii RW1]
gi|148501879|gb|ABQ70133.1| exodeoxyribonuclease III Xth [Sphingomonas wittichii RW1]
Length = 285
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 30/135 (22%), Gaps = 23/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------------DFWQKM 46
++L + + P ++ GDFN
Sbjct: 151 DFLGRMIRWSEELREPTLLVGDFNIAPLECDVWSHKQLLDVVSHTPIEVETLGRLQASHD 210
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--QSDLDTR 104
D P R + R + + ++ + +
Sbjct: 211 WVDLGRSFVPPPARLYTWWSYRAQDWA-ASDRGRRLDHMWASPEVAKLATNHYVCEPCRS 269
Query: 105 RSKLSTHCPLTIEYD 119
+ S H PL E D
Sbjct: 270 WIRPSDHIPLITELD 284
>gi|197120014|ref|YP_002140441.1| endonuclease/exonuclease/phosphatase family protein [Geobacter
bemidjiensis Bem]
gi|197089374|gb|ACH40645.1| endonuclease/exonuclease/phosphatase family protein [Geobacter
bemidjiensis Bem]
Length = 249
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 26/118 (22%), Gaps = 16/118 (13%)
Query: 5 QGEWLK--KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L +W P + GDFN +S MD L
Sbjct: 145 QVKVLTGPEWLS-HPDCRPPVALCGDFNTLPSSTIHKQLKNALMDEQEKLKFGHNHFTFP 203
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + S H PL +
Sbjct: 204 S------------KLPMVRFDHIFVSPDLVVEEELIPRTKLTGA-ASDHLPLVVRLRL 248
>gi|170703616|ref|ZP_02894358.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
IOP40-10]
gi|170131473|gb|EDT00059.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
IOP40-10]
Length = 286
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 10/96 (10%), Positives = 25/96 (26%), Gaps = 1/96 (1%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+I GDFN S + + + + +
Sbjct: 190 IICGDFNSAFGSDAYQR-LLEPIADAPSFVDAWVARHPGHTPPPTAGVYDTVQWSEGPLA 248
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + +++ + S H P+ +E +
Sbjct: 249 CDFVFVTDTLLPRVTRCEIDGDVRASDHQPVVLELE 284
>gi|108761648|ref|YP_634768.1| endonuclease/exonuclease/phosphatase family protein [Myxococcus
xanthus DK 1622]
gi|108465528|gb|ABF90713.1| endonuclease/exonuclease/phosphatase family protein [Myxococcus
xanthus DK 1622]
Length = 287
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 20/122 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q ++ + Q P V+ GD N +S + +
Sbjct: 173 RQSAYVARLMAQ---DSRPKVLMGDLNDGPDSRSTR-LLRRALHDVAAATGGTGGTYPLP 228
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L ++F+ V+ +D +S H P+ + +
Sbjct: 229 LF-----------LPTLRIDYVLACDAFTFVASRVLRVD-----VSDHYPVVADLRLKPE 272
Query: 124 NV 125
V
Sbjct: 273 AV 274
>gi|327539872|gb|EGF26475.1| endonuclease/exonuclease/phosphatase family protein [Rhodopirellula
baltica WH47]
Length = 286
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 36/117 (30%), Gaps = 20/117 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q ++++ P ++ GDFN S + DG + +S
Sbjct: 187 EQATKVREFIQSL---SNPAILLGDFNDTPESRTVQ------LFQDGFVEADKPADDSFT 237
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++ +D+ + +++ + D D S H P+
Sbjct: 238 FSAEKPDREIDFLFASPE-------TQWTVKTVDVIDEPL----ASDHRPVMAVLQL 283
>gi|258651796|ref|YP_003200952.1| endonuclease/exonuclease/phosphatase [Nakamurella multipartita DSM
44233]
gi|258555021|gb|ACV77963.1| Endonuclease/exonuclease/phosphatase [Nakamurella multipartita DSM
44233]
Length = 942
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 29/122 (23%), Gaps = 19/122 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
D +I GD N + I + + V L
Sbjct: 663 DPTGSGDPDRLIVGDLNSYDHEDPIRTLREAGYTDQ---IAATGGEFAYGYVFDGQAGYL 719
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR----------------SKLSTHCPLTIE 117
D+ + + ++ D+ D+ + S H P+ +
Sbjct: 720 DHALASASLTGQVTAAGEWHINADEPDVLDYDTTFKSPEQDALFEANQFRASDHDPVLVG 779
Query: 118 YD 119
D
Sbjct: 780 ID 781
>gi|311740203|ref|ZP_07714035.1| extracellular nuclease [Corynebacterium pseudogenitalium ATCC
33035]
gi|311304758|gb|EFQ80829.1| extracellular nuclease [Corynebacterium pseudogenitalium ATCC
33035]
Length = 924
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 20/131 (15%)
Query: 5 QGEW-LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + L Q+ P GDFN + DG + + +
Sbjct: 694 QAQAVLDALHKQEDWKDKPLFALGDFNTY-----THETALDVFRNDGFTVPAEKYEADPS 748
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--------------QSDLDTRRSKLS 109
+LD+ + ++ L D ++ D D + S
Sbjct: 749 YQFSGLLGTLDHVLANKVATGTLDDAQVWNINADEPVAFEYSRRNYNIVDFYDDSPFRAS 808
Query: 110 THCPLTIEYDF 120
H P+ + +
Sbjct: 809 DHDPVKVGFTL 819
>gi|126331541|ref|XP_001377893.1| PREDICTED: similar to CCR4 carbon catabolite repression 4-like
[Monodelphis domestica]
Length = 376
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 29/112 (25%), Gaps = 7/112 (6%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KESTCNVIKRNKSS--- 72
IP ++ GDFN + ++ + + R+
Sbjct: 260 AEIPLIVCGDFNAEPTEEVYRHFASSSLNLSSAYKLLSADGQSEPPYTTWKIRSSGECRH 319
Query: 73 -LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
LDY R + + + S H L ++ F +
Sbjct: 320 TLDYIWYSRQALHVRSALGLLTEEQIGPNRLPSFNYPSDHLSLVCDFSFNED 371
>gi|284033091|ref|YP_003383022.1| endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
gi|283812384|gb|ADB34223.1| Endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
Length = 355
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 30/115 (26%), Gaps = 18/115 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L+ W +P ++AGDFN + D + G E +
Sbjct: 252 KQDLDVLRTW----CAGDVPTIVAGDFNATTDHADFRDALGRNCRSVGP---AVGEGLNG 304
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
R + + S L T + S H +
Sbjct: 305 TWPADRPALFRT------VIDHVVTGPGVEP-----SRLRTYHLQGSDHRAVIAT 348
>gi|325846697|ref|ZP_08169612.1| exodeoxyribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481455|gb|EGC84496.1| exodeoxyribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 275
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 31/124 (25%), Gaps = 22/124 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+K+ P + GDFN I
Sbjct: 154 EKLDQNKPVIACGDFNVAHKEIDLKHPENNHKSAGFTDEERSGFTNLLNKGFVDTFRYLH 213
Query: 57 QE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + +R K+S F++ + + +D+ + H P+
Sbjct: 214 GDVEGKYTWWAQRVKTSKIN-NSGWRIDYFIVSDRIKEKIKESDMIDSGDRQ--DHTPIY 270
Query: 116 IEYD 119
I D
Sbjct: 271 INID 274
>gi|254470152|ref|ZP_05083556.1| endonuclease/exonuclease/phosphatase family protein [Pseudovibrio
sp. JE062]
gi|211960463|gb|EEA95659.1| endonuclease/exonuclease/phosphatase family protein [Pseudovibrio
sp. JE062]
Length = 346
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 12/104 (11%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
QK +T P ++ GD+N D +QK+ D L + +
Sbjct: 251 QKHRTDTPIMVLGDWN-----TPVWSDTFQKLLAD--LKLKTTFTSFVPQTTRYFINPFL 303
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
V+ + DL S H P+
Sbjct: 304 GKVLGSKVDHITSSEKII-----IKDLMIGEDVGSDHFPIFATL 342
>gi|319902450|ref|YP_004162178.1| Endonuclease/exonuclease/phosphatase [Bacteroides helcogenes P
36-108]
gi|319417481|gb|ADV44592.1| Endonuclease/exonuclease/phosphatase [Bacteroides helcogenes P
36-108]
Length = 360
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 22/96 (22%), Gaps = 17/96 (17%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P ++ GDFN +S ++ DG + Y
Sbjct: 279 PVLVCGDFNSLPSSHTYY--HLREFLKDGFRTAGHGYMHTY-----------RYGKGLLR 325
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ S H P+ +E
Sbjct: 326 IDYIFHSPTLE----GIDYYSPDLDLCSDHNPVIME 357
>gi|294055186|ref|YP_003548844.1| Endonuclease/exonuclease/phosphatase [Coraliomargarita akajimensis
DSM 45221]
gi|293614519|gb|ADE54674.1| Endonuclease/exonuclease/phosphatase [Coraliomargarita akajimensis
DSM 45221]
Length = 261
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 35/121 (28%), Gaps = 20/121 (16%)
Query: 5 QGEWLKKWADQKIKTGI-----PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q E L + + + + +I GDFN +S D + + Q
Sbjct: 154 QVERLIGYLEARHREKGGETYFSPIICGDFN---SSATKQRDAVKHLIGYLEGHCAYQLL 210
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
S + + + S + + +S +S H P+ + +
Sbjct: 211 PSGGKTFPS-------ILPMQSLDFIFVPPSHEVRRCEVL-----KSYVSDHRPVVADLE 258
Query: 120 F 120
Sbjct: 259 L 259
>gi|269968311|ref|ZP_06182334.1| putative phospholipase C precursor [Vibrio alginolyticus 40B]
gi|269827084|gb|EEZ81395.1| putative phospholipase C precursor [Vibrio alginolyticus 40B]
Length = 442
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 11/127 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I + V +GDFN D + E
Sbjct: 314 QRQFKQIRALAQSLKIPSSETVVYSGDFNVNKRKFPSDYQQMIANLSAIEPHYSGYTEST 373
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ +L ++ + + + S++ + +D + LS H
Sbjct: 374 FDPRINNFAGEALSGGENVEYLDYVMVSSEYGVKSFNDNRVDVPRTTAESLWKHYNLSDH 433
Query: 112 CPLTIEY 118
P++
Sbjct: 434 FPVSATI 440
>gi|304404660|ref|ZP_07386321.1| Endonuclease/exonuclease/phosphatase [Paenibacillus curdlanolyticus
YK9]
gi|304346467|gb|EFM12300.1| Endonuclease/exonuclease/phosphatase [Paenibacillus curdlanolyticus
YK9]
Length = 313
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 30/125 (24%), Gaps = 7/125 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L Q + + + +I GD N + + ++ + S
Sbjct: 182 LYAQLTTMNNFIVTRRDPAGSQIIMGDLNIPGENQQHYAQLYDRLRLVDCWFLADNQATS 241
Query: 62 TCN---VIKRNKSSLDYFVIDRDNKNFLIDNSFSIV----SYDQSDLDTRRSKLSTHCPL 114
+ D + L+ +V + +S H +
Sbjct: 242 GPTLVIENNFYANPDDRPSSNHRLDYVLMRGGIRLVPILADIEVLKFQHNGRFISDHFGV 301
Query: 115 TIEYD 119
+D
Sbjct: 302 RASFD 306
>gi|294011035|ref|YP_003544495.1| putative metal-dependent hydrolase [Sphingobium japonicum UT26S]
gi|292674365|dbj|BAI95883.1| putative metal-dependent hydrolase [Sphingobium japonicum UT26S]
Length = 248
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 27/116 (23%), Gaps = 21/116 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + +P V+ GD N G DF + F +
Sbjct: 151 RKQAAAVIH--AASSRDAMPTVLMGDLNEWSAERGCLADFARHYSFAPCGRSFHARRP-- 206
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ +V K S H P+ E+
Sbjct: 207 ----------------VARLDRIMHCGRLKLVDCGVH-ESAAARKASDHLPIWAEF 245
>gi|108762235|ref|YP_632710.1| endonuclease/exonuclease/phosphatase family protein [Myxococcus
xanthus DK 1622]
gi|108466115|gb|ABF91300.1| endonuclease/exonuclease/phosphatase family protein [Myxococcus
xanthus DK 1622]
Length = 329
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 8/96 (8%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
V+ GD N S ++ DG L+R ++ ++
Sbjct: 238 VVLGGDLNDVPGSEPI-----TALERDGALLRVSSDRPASETWTYTYHGDTQAIDH---L 289
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ S+ + S H + ++
Sbjct: 290 YLARGGGTYVPGSFRAARDPRGGYGGSDHAAVFADF 325
>gi|229367158|gb|ACQ58559.1| Deoxyribonuclease-1 precursor [Anoplopoma fimbria]
Length = 273
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 38/119 (31%), Gaps = 6/119 (5%)
Query: 4 QQGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L ++ GDFN + + +D ++ D +
Sbjct: 156 KEIDALYDVVTDARAQFQTNNIMLLGDFNAGCSYVSRSDWQNIRLFTDKKFDWLIPDSAD 215
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD--LDTRRSKLSTHCPLTIEY 118
T + D V+ D ++ S + Y+ + + +S H P+ +
Sbjct: 216 TTVSHSKCP--YDRIVVTDDLMKEVVSGSAGVFDYELAYGLTPVQAKAVSDHFPVEVAL 272
>gi|15672926|ref|NP_267100.1| hypothetical protein L169897 [Lactococcus lactis subsp. lactis
Il1403]
gi|12723881|gb|AAK05042.1|AE006329_1 unknown protein [Lactococcus lactis subsp. lactis Il1403]
Length = 352
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 7/124 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ---EK 59
QQ L + + G + D+N + + W K P L + +
Sbjct: 232 KQQLLTLFDEMKKYVSKGDYVICGADYNHALAGKAHPELTWMKEFPTENLTKGMRVVAPT 291
Query: 60 ESTCNVIKRNKSSLDY-FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ FL+ N+ + D + K S H P+ +++
Sbjct: 292 NAPTVRSLDYAYDKKNPKNTFGIIDGFLVSNNIKDLKIQTID---NQFKSSDHQPVVMDF 348
Query: 119 DFEK 122
EK
Sbjct: 349 SLEK 352
>gi|212697551|ref|ZP_03305679.1| hypothetical protein ANHYDRO_02124 [Anaerococcus hydrogenalis DSM
7454]
gi|212675454|gb|EEB35061.1| hypothetical protein ANHYDRO_02124 [Anaerococcus hydrogenalis DSM
7454]
Length = 275
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 31/125 (24%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+K+ P + GDFN I
Sbjct: 154 EKLDQNKPVIACGDFNVAHKEIDLKHPENNHKSAGFTDEERSGFTNLLNKGFVDTFRYLH 213
Query: 57 QE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + +R K+S F++ + + +D+ + H P+
Sbjct: 214 GDVEGKYTWWAQRVKTSKIN-NSGWRIDYFIVSDRIKEKIKESDMIDSGDRQ--DHTPIY 270
Query: 116 IEYDF 120
I D
Sbjct: 271 INMDM 275
>gi|28973671|gb|AAO64154.1| unknown protein [Arabidopsis thaliana]
gi|29824267|gb|AAP04094.1| unknown protein [Arabidopsis thaliana]
gi|110737063|dbj|BAF00485.1| hypothetical protein [Arabidopsis thaliana]
Length = 321
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 15/137 (10%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL--------- 51
+LS+ + K + + ++AGDFN + + P
Sbjct: 186 LLSRLAQ-FKTLISDEFECTPSLLLAGDFNSIPGDMVYSYLVSGNAKPTETIEEEEAPVP 244
Query: 52 ---LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDLDTRRS 106
+ + + N ++LDY I + + S D
Sbjct: 245 LSSVYEVTRGEPKFTNCTPGFTNTLDYIFISPSDFIKPVSILQLPEPDSPDVVGFLPNHH 304
Query: 107 KLSTHCPLTIEYDFEKG 123
S H P+ E++ +
Sbjct: 305 HPSDHLPIGAEFEIRRE 321
>gi|332981666|ref|YP_004463107.1| Endonuclease/exonuclease/phosphatase [Mahella australiensis 50-1
BON]
gi|332699344|gb|AEE96285.1| Endonuclease/exonuclease/phosphatase [Mahella australiensis 50-1
BON]
Length = 287
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 19/118 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + + Q+ K P ++ GDFN +S +D + D + + ++
Sbjct: 184 KQIDAINAALAQESK---PTILLGDFNNICSSDEISDISDRLKD----VAALLGKGDAGT 236
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
N + + + V Y + L LS H + +
Sbjct: 237 YAYGDNAPN-------VRIDYIWVTDDILPVEYHVNLL-----GLSDHASVVAKLLLN 282
>gi|218709697|ref|YP_002417318.1| putative phospholipase C precursor [Vibrio splendidus LGP32]
gi|218322716|emb|CAV18892.1| putative phospholipase C precursor [Vibrio splendidus LGP32]
Length = 444
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 11/125 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I V +GDFN + D + + D
Sbjct: 317 QRQFKQMRALAQSLNIPASETVVYSGDFNVNKLKFPDDYQQMFANLQADKPTYSGYTAST 376
Query: 61 STCNVIKR---------NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ N LDY V+ + +++ V S + LS H
Sbjct: 377 FDPRINNFAGEPMSGGENVEYLDYVVVSSEYAAKAHNDNRVDVPRSTSSELWKHYNLSDH 436
Query: 112 CPLTI 116
P++
Sbjct: 437 FPVSA 441
>gi|213405473|ref|XP_002173508.1| DNA-(apurinic or apyrimidinic site) lyase [Schizosaccharomyces
japonicus yFS275]
gi|212001555|gb|EEB07215.1| DNA-(apurinic or apyrimidinic site) lyase [Schizosaccharomyces
japonicus yFS275]
Length = 554
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 34/137 (24%), Gaps = 30/137 (21%)
Query: 8 WLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTD-------------------------D 41
L+ + + ++ GD N + + D
Sbjct: 170 ALRDRIIRLTQEAKRNVILLGDINILRDELDTADNKDIQKEQFDESIRESREWVRGMLQP 229
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + D R P + R + F I + + + Q
Sbjct: 230 HPEGLLIDTTRHRHPVRRGMFTCWNTRLNTRPTNFG--TRIDYICISPAL--LPWMQDAN 285
Query: 102 DTRRSKLSTHCPLTIEY 118
S HCP+ +++
Sbjct: 286 IMPEIMGSDHCPVFLDF 302
>gi|270296071|ref|ZP_06202271.1| endonuclease/exonuclease/phosphatase [Bacteroides sp. D20]
gi|270273475|gb|EFA19337.1| endonuclease/exonuclease/phosphatase [Bacteroides sp. D20]
Length = 267
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 11/109 (10%), Positives = 20/109 (18%), Gaps = 12/109 (11%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ P ++ GDFN + + +D +
Sbjct: 170 IQKINPDNFPLILTGDFNMEHTDSSIQKLNEKMIDARTSAKKTDSFGTFNGW-------- 221
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-LSTHCPLTIEYDF 120
Y +S H P+ F
Sbjct: 222 ---GTRSSIIDYIYYKGFKMCTEYVTIREKYAGKTFISDHYPIKGVLKF 267
>gi|237799461|ref|ZP_04587922.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331022317|gb|EGI02374.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 261
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + L + ++ G P ++AGDFN + L E+
Sbjct: 160 RQQLKLLAELM-ARLPEGEPVIVAGDFND-------WRQRADALLHGTGLHEVFVERFGA 211
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + N+ S S S LS H PL +E
Sbjct: 212 P------AKSFPARWPLLRLDRIYVRNATSHSPKVLSSRPW--SHLSDHAPLAVELTL 261
>gi|160900145|ref|YP_001565727.1| endonuclease/exonuclease/phosphatase [Delftia acidovorans SPH-1]
gi|160365729|gb|ABX37342.1| Endonuclease/exonuclease/phosphatase [Delftia acidovorans SPH-1]
Length = 1284
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 28/134 (20%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ L W + T V+ GDFN ++ G + +
Sbjct: 869 AQQLSNWLATRPTGVTSPHVVLVGDFNAYAKEDPI-----TTLESGGYVKV----SQGLS 919
Query: 64 NVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQ---------SDLDTRRS 106
SLD+ ++ + + ++ Y+ S
Sbjct: 920 YAFDGMWGSLDHVLVSTSLQPSVGREVKWAINAEEPEVLDYNVEFKSLDQQASFYAPTAY 979
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+ + +F
Sbjct: 980 RSSDHNPILLGLNF 993
>gi|281183305|ref|NP_001162517.1| deoxyribonuclease-1-like 1 [Papio anubis]
gi|160213460|gb|ABX10988.1| deoxyribonuclease I-like 1, isoform 1 (predicted) [Papio anubis]
Length = 302
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 30/105 (28%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN S+ ++ + + E T + + +
Sbjct: 173 QSKDVILLGDFNADCASLTKKRLDKLELRTEPGFHWVIADGEDTTVRASTHCAYDRIVLH 232
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ L + + +S H P+ +E +
Sbjct: 233 GERCRSLLHTAAAFDFPTTFQLTEEEALNISDHYPVEVELKLSQA 277
>gi|125718506|ref|YP_001035639.1| exodeoxyribonuclease [Streptococcus sanguinis SK36]
gi|125498423|gb|ABN45089.1| Exodeoxyribonuclease, putative [Streptococcus sanguinis SK36]
Length = 322
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 25/139 (17%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------- 49
+Q W K+A+ + P + GD+N I + + P
Sbjct: 188 DRQV-WDAKYAEYLATLDEQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTN 246
Query: 50 -------GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + +R+K+S +L N + +
Sbjct: 247 LLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMI 305
Query: 102 DTRRSKLSTHCPLTIEYDF 120
D+ + H P+ +E +
Sbjct: 306 DSGARQ--DHTPIVMEIEL 322
>gi|332142708|ref|YP_004428446.1| Endonuclease/exonuclease/phosphatase [Alteromonas macleodii str.
'Deep ecotype']
gi|327552730|gb|AEA99448.1| Endonuclease/exonuclease/phosphatase [Alteromonas macleodii str.
'Deep ecotype']
Length = 237
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 36/122 (29%), Gaps = 20/122 (16%)
Query: 3 SQQGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q L + Q++K P V+AGDFN ++ ++ Q+K
Sbjct: 133 RSQFSLLHEHLSQRLKEKQTPLVLAGDFNEW----QFFSKAFKGLNS-----LLFQQKVG 183
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + + R S H P+ I+ +
Sbjct: 184 ATFPSH---------FPVFSLDRVWVTDDIKVKACRKLKNAKTRVY-SDHLPVLIDIELP 233
Query: 122 KG 123
+
Sbjct: 234 ES 235
>gi|312794993|ref|YP_004027915.1| Endonuclease/Exonuclease/phosphatase family protein [Burkholderia
rhizoxinica HKI 454]
gi|312166768|emb|CBW73771.1| Endonuclease/Exonuclease/phosphatase family protein [Burkholderia
rhizoxinica HKI 454]
Length = 301
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ TG P V+AGDFN N + ++ + + ++
Sbjct: 196 RQMHWIAHWIAREAATG-PLVLAGDFNDWKNDSE---PLFAEIGLREVASTLGEAGKTFP 251
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + R + LS H P +
Sbjct: 252 AFSP-----------ALALDKMFVRG---VTPVQWLEPAPRTAWLSDHLPYMARLRLD 295
>gi|255533657|ref|YP_003094029.1| endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
gi|255346641|gb|ACU05967.1| Endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
Length = 635
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 11/114 (9%), Positives = 30/114 (26%), Gaps = 12/114 (10%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ + K + P + GDFN + + +++ + +
Sbjct: 205 AKAIVAVIQAKNTSNFPLITFGDFNAQPGTAEIE--YYKTSLDVIDALGDSLGDLTFHGW 262
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD-TRRSKLSTHCPLTIEY 118
+ + + + +S++ D S H + Y
Sbjct: 263 D---------AIGNTKIDWMMSNRKMGFLSWEVMDQPGPGGLWPSDHWAVMATY 307
>gi|111020869|ref|YP_703841.1| exodeoxyribonuclease III, C-terminal [Rhodococcus jostii RHA1]
gi|110820399|gb|ABG95683.1| possible exodeoxyribonuclease III, C-terminal [Rhodococcus jostii
RHA1]
Length = 91
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 7/62 (11%), Positives = 18/62 (29%)
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ ++ D + + V+ ++S H P+ ++Y
Sbjct: 30 DGPYSWWSWLGQGFVNDTGWRIDYHLATPRLAQAAVAAGTDREPAADRRMSDHAPVVVDY 89
Query: 119 DF 120
D
Sbjct: 90 DL 91
>gi|311894312|dbj|BAJ26720.1| hypothetical protein KSE_08830 [Kitasatospora setae KM-6054]
Length = 325
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 33/137 (24%), Gaps = 28/137 (20%)
Query: 1 MLSQQGEWLKKWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ-- 57
+ ++Q ++ + D +I G P V+AGD N +
Sbjct: 195 VRARQLRAVRAFLDAKRIPAGEPVVLAGDLNIDSHGGEYPALLANGGLAPATARTGWANS 254
Query: 58 -EKESTCNVIKRNKSSLD-----------------YFVIDRDNKNFLIDNSFSIVSYDQS 99
+ R Y + S SY +
Sbjct: 255 FDPADNSIAAYRYPGEPKEDLDYVLYRADHARPQQYANTVHRFHSAPWTVSSWGTSYTYT 314
Query: 100 DLDTRRSKLSTHCPLTI 116
D LS H PL
Sbjct: 315 D-------LSDHYPLLA 324
>gi|253702348|ref|YP_003023537.1| endonuclease/exonuclease/phosphatase [Geobacter sp. M21]
gi|251777198|gb|ACT19779.1| Endonuclease/exonuclease/phosphatase [Geobacter sp. M21]
Length = 249
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 27/118 (22%), Gaps = 16/118 (13%)
Query: 5 QGEWLK--KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L +W P + GDFN +S MD L +
Sbjct: 145 QVRVLTGPEWLS-HPDCRPPVALCGDFNTLPSSTIHKQLKNALMDEQEKLKFGHNQFTFP 203
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + + S H PL +
Sbjct: 204 S------------KLPMVRFDHIFVSPDLVVENELIPRTKLTGA-ASDHLPLVVRLRL 248
>gi|42565714|ref|NP_566904.2| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
thaliana]
gi|53828525|gb|AAU94372.1| At3g48425 [Arabidopsis thaliana]
gi|55733769|gb|AAV59281.1| At3g48425 [Arabidopsis thaliana]
gi|332644894|gb|AEE78415.1| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
Length = 364
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 16/151 (10%), Positives = 35/151 (23%), Gaps = 40/151 (26%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW----------------------- 43
+ + ++ ++ + P + GD N I + +
Sbjct: 203 KRIVEFLNK--TSDKPLIWCGDLNVSHEEIDVSHPEFFATAKLNGYVPPNKEDCGQPGFT 260
Query: 44 -----------QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
++ +E+E Y FL+
Sbjct: 261 PSERGRFGATIKEGRLVDAYRYLHKEQEMESGFSWSGNPIGKYRGKRMRIDYFLVSEQLK 320
Query: 93 IVSYDQS----DLDTRRSKLSTHCPLTIEYD 119
++ S HCP+T+E
Sbjct: 321 DRIVSCKMHGRGIELEGFHGSDHCPVTLELS 351
>gi|328467999|gb|EGF39023.1| exodeoxyribonuclease A [Lactobacillus helveticus MTCC 5463]
Length = 275
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 46/143 (32%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF-------------- 42
L + + W +K+ + +K+ P + +GD+N I
Sbjct: 136 LKRLADRQVWDQKYIEYLKKLNEKKPVLASGDYNCAHTEIDLKHPENNHHSAGFTDEERA 195
Query: 43 -WQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + G F + + +R +++ +L+ N +
Sbjct: 196 DFTNLLDAGFTDTFRKVNGNVEGVYSWWAQRVRTAKAN-NSGWRIDYWLVSNRIADKVVR 254
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+DT + HCP+ +E +
Sbjct: 255 SEMIDTGKRA--DHCPILLEINL 275
>gi|218189227|gb|EEC71654.1| hypothetical protein OsI_04097 [Oryza sativa Indica Group]
Length = 321
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 25/121 (20%), Gaps = 21/121 (17%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL-----------------LIRFPQEK 59
++ P ++AGD N SI + + Q
Sbjct: 205 LEKSKPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIEERESFETNFSSKGLVDTFRKQHP 264
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + FL S + S H P+ +
Sbjct: 265 NAVGYTFWGENQRITNKGW--RLDYFLASESITDK--VHDSYILPDVSFSDHSPIGLVLK 320
Query: 120 F 120
Sbjct: 321 L 321
>gi|161506683|ref|YP_001576633.1| exodeoxyribonuclease A [Lactobacillus helveticus DPC 4571]
gi|260101796|ref|ZP_05752033.1| exodeoxyribonuclease [Lactobacillus helveticus DSM 20075]
gi|160347672|gb|ABX26346.1| Exodeoxyribonuclease A [Lactobacillus helveticus DPC 4571]
gi|260084387|gb|EEW68507.1| exodeoxyribonuclease [Lactobacillus helveticus DSM 20075]
Length = 275
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 46/143 (32%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF-------------- 42
L + + W +K+ + +K+ P + +GD+N I
Sbjct: 136 LKRLADRQVWDQKYIEYLKKLNEKKPVLASGDYNCAHTEIDLKHPENNHHSAGFTDEERA 195
Query: 43 -WQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + G F + + +R +++ +L+ N +
Sbjct: 196 DFTNLLDAGFTDTFRKVNGNVEGVYSWWAQRVRTAKAN-NSGWRIDYWLVSNRIADKVVR 254
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+DT + HCP+ +E +
Sbjct: 255 SEMIDTGKRA--DHCPILLEINL 275
>gi|74008844|ref|XP_549370.2| PREDICTED: similar to Deoxyribonuclease I-like 1 precursor (DNase
I-like 1) (Muscle-specific DNase I-like) (DNase X) (XIB)
isoform 1 [Canis familiaris]
Length = 295
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 29/104 (27%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ ++ GDFN S+ + + + E T + +
Sbjct: 169 QRWQSKDMILLGDFNADCASLNKKRLAELALRTEAGFRWVIADGEDTTVRASTHCAYDRI 228
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++ L + + +S H P+ +E
Sbjct: 229 VLHGERCQSLLSSAAAFNFPRSFRLNEEEALNISDHYPVEVELS 272
>gi|294625453|ref|ZP_06704084.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294664696|ref|ZP_06730028.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292600276|gb|EFF44382.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605521|gb|EFF48840.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 299
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 33/122 (27%), Gaps = 10/122 (8%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ ++Q L + P VIAGDFN +++ + + +
Sbjct: 178 IRTRQVADLLDFIASN-SAQAPVVIAGDFNTAADTLDLQ-ALRRGYGDSYGSVHRNSDAT 235
Query: 61 STCNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + +D+ ++ Y S H + +
Sbjct: 236 VSTLNMHVFDRPARIDHVFFQQNRLLAREARILFDTPY------AEGRWASDHYGVWVRL 289
Query: 119 DF 120
Sbjct: 290 QL 291
>gi|270003873|gb|EFA00321.1| hypothetical protein TcasGA2_TC003159 [Tribolium castaneum]
Length = 398
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 34/135 (25%), Gaps = 15/135 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ ++QG+ L ++ Q P VI GDFN + + + G
Sbjct: 262 LRNEQGKDLLQFVSQHCGP-RPVVICGDFNAEPIEPIYSTILSDEYLNLGSAYADCDSSS 320
Query: 61 STCNVI---KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS----------K 107
+ D + V +L T
Sbjct: 321 ANSAAREPPYTTWKIRDEGEVCHTIDYIFYKKGCLEVEA-VLELPTGEEIGEDRVPSFSY 379
Query: 108 LSTHCPLTIEYDFEK 122
S H L ++ +
Sbjct: 380 PSDHFSLVCDFKIGQ 394
>gi|189235069|ref|XP_974729.2| PREDICTED: similar to nocturnin CG31299-PE [Tribolium castaneum]
Length = 397
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 34/135 (25%), Gaps = 15/135 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ ++QG+ L ++ Q P VI GDFN + + + G
Sbjct: 261 LRNEQGKDLLQFVSQHCGP-RPVVICGDFNAEPIEPIYSTILSDEYLNLGSAYADCDSSS 319
Query: 61 STCNVI---KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS----------K 107
+ D + V +L T
Sbjct: 320 ANSAAREPPYTTWKIRDEGEVCHTIDYIFYKKGCLEVEA-VLELPTGEEIGEDRVPSFSY 378
Query: 108 LSTHCPLTIEYDFEK 122
S H L ++ +
Sbjct: 379 PSDHFSLVCDFKIGQ 393
>gi|312882993|ref|ZP_07742724.1| putative phospholipase C [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369153|gb|EFP96674.1| putative phospholipase C [Vibrio caribbenthicus ATCC BAA-2122]
Length = 441
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 11/124 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + +++ A I + GDFN GD + E
Sbjct: 314 QRQFKQMRQLASTLNIPKNEAVIYGGDFNVNKRKFPGDYQQMLSNLSAIEPSYSGYTEST 373
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
V + ++ N + S+ + +D + LS H
Sbjct: 374 FDPRVNNFAGKIREDNGNVEYLDYVMVSNEYLNKSHSDNRVDVPRSTSEGLWKHFNLSDH 433
Query: 112 CPLT 115
P++
Sbjct: 434 FPVS 437
>gi|313158853|gb|EFR58233.1| endonuclease/exonuclease/phosphatase family protein [Alistipes sp.
HGB5]
Length = 299
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 47/119 (39%), Gaps = 12/119 (10%)
Query: 5 QGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + + K +++ + P + GDFN + +S + G + P
Sbjct: 190 QVDEINKVIEREFGGSKKPVFLGGDFNARPDSPTISKLK------TGWTVLTPHGASDFT 243
Query: 64 NVIKRNKSSLDYFV-IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + +DY + + + + + ++ +++ D+ + S H P+ ++ F+
Sbjct: 244 HSSQAPNKCIDYILLWNGNGAKCDVVGTKIMLDFNKGDIK----RASDHIPVLVDVKFQ 298
>gi|310799683|gb|EFQ34576.1| endonuclease/Exonuclease/phosphatase [Glomerella graminicola
M1.001]
Length = 307
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 35/126 (27%), Gaps = 14/126 (11%)
Query: 3 SQQGEWLKKWADQKI------KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP 56
+ E L + A T +P + GD N + ++ + D +
Sbjct: 176 ERSAELLVRLAKGWESGSGPEDTAVPVFLGGDLNVEPDNAAYKTLVAEGNLRDASDVVPE 235
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI-----VSYDQSDLDTRRSKLSTH 111
+ + D D + + + + + R +S H
Sbjct: 236 AHRTGHSKT---YTAFTDVDWDDMLIDHLFVRDPAARGIKFLSHAVLPNRFDDRLFISDH 292
Query: 112 CPLTIE 117
P+ ++
Sbjct: 293 RPVVLD 298
>gi|228476525|ref|ZP_04061215.1| metal-dependent hydrolase [Streptococcus salivarius SK126]
gi|228251946|gb|EEK10992.1| metal-dependent hydrolase [Streptococcus salivarius SK126]
Length = 303
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 16/112 (14%), Positives = 30/112 (26%), Gaps = 3/112 (2%)
Query: 11 KWADQKIKT-GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+++ K G P ++AGDFN G ++ + S V
Sbjct: 194 ARIEERFKAIGKPLILAGDFNNPAGREGHQAILASSLNLQDSFEVAKETTGSYT-VGPGI 252
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+++ + +S H L E F+
Sbjct: 253 DGWKGNE-EPLRIDYVFASQDWTVERLSVIFDGNNQPLVSDHYGLEAELTFK 303
>gi|254500886|ref|ZP_05113037.1| endonuclease/exonuclease/phosphatase family [Labrenzia alexandrii
DFL-11]
gi|222436957|gb|EEE43636.1| endonuclease/exonuclease/phosphatase family [Labrenzia alexandrii
DFL-11]
Length = 1702
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 16/148 (10%), Positives = 32/148 (21%), Gaps = 26/148 (17%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q E L W +I GD N + Q + + S
Sbjct: 1551 QAAEALDAWLATNPTGSDDTDILILGDLNSYLMEDPIQYLLSQDDGLIDFNLLGGDNQTS 1610
Query: 62 TCNVIK--------RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--------------- 98
+ + + ++I +++
Sbjct: 1611 FGFPVDLGTAPSVQSFGALDFALASNSLLDQVTGAEEWNINAFEASALDYNTNFKPDSQI 1670
Query: 99 -SDLDTRRSKLSTHCPLTIEYDFEKGNV 125
+ + S H P+ I D +
Sbjct: 1671 SDLYAADQYRASDHNPMLIGLDLTADTI 1698
>gi|145234765|ref|XP_001390031.1| endonuclease/exonuclease/phosphatase family protein [Aspergillus
niger CBS 513.88]
gi|134057704|emb|CAK38102.1| unnamed protein product [Aspergillus niger]
Length = 604
Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 7/118 (5%)
Query: 5 QGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + K+ + + + AGDFN + D + E
Sbjct: 490 QAKVVAKFVTSILDVNSDAKIITAGDFNEYAFVEPLEVFVSESKLQDLEEVTGIPATERY 549
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +N SLD+ + + + + + +LS H P ++
Sbjct: 550 TYLYNQNCESLDHMYVSSAL-----TSGAKMEHIHVNSWVSTDDELSDHDPTVALFNM 602
>gi|324991375|gb|EGC23308.1| exodeoxyribonuclease [Streptococcus sanguinis SK353]
Length = 275
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 34/125 (27%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
++ P + GD+N I + + P
Sbjct: 154 ARLDGQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLH 213
Query: 57 QEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + +R+K+S +L N + +D+ + H P+
Sbjct: 214 GDIPNKYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--DHTPIV 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 MEIEL 275
>gi|332993730|gb|AEF03785.1| hypothetical protein ambt_11320 [Alteromonas sp. SN2]
Length = 319
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 33/123 (26%), Gaps = 12/123 (9%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q +K+ K P ++AGDFN + L+ +
Sbjct: 208 DRQMNGVKRIIKAAEKLEGPVIVAGDFNATHFNSAI-----------LLMKKHFFNATID 256
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYDFE 121
R+ S ++ + + + S S H P+ +
Sbjct: 257 SYFTSRHSSWPGEGRRLGLLGPWIQIDYIFFKGLESNNTFVHSESYGSDHYPIETTFSIR 316
Query: 122 KGN 124
N
Sbjct: 317 IKN 319
>gi|332358812|gb|EGJ36635.1| exodeoxyribonuclease [Streptococcus sanguinis SK355]
Length = 275
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 25/139 (17%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQK 45
+Q W K+A+ + P + GD+N I + +
Sbjct: 141 DRQV-WDAKYAEYLATLDEQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTN 199
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N + +
Sbjct: 200 LLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMI 258
Query: 102 DTRRSKLSTHCPLTIEYDF 120
D+ + H P+ +E +
Sbjct: 259 DSGARQ--DHTPIVMEIEL 275
>gi|254248065|ref|ZP_04941386.1| Metal-dependent hydrolase [Burkholderia cenocepacia PC184]
gi|124872841|gb|EAY64557.1| Metal-dependent hydrolase [Burkholderia cenocepacia PC184]
Length = 327
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 11/95 (11%), Positives = 26/95 (27%), Gaps = 1/95 (1%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN +S F + + + + D
Sbjct: 233 IVCGDFNSAFDSDAYRR-FLEPIADAPGFVDAWIARHPGHTPPPTAGIYDTVQWSDGPLA 291
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + +++ + S H P+ +E
Sbjct: 292 CDFVFVTDTLLPRVIGCEIDGDVRASDHQPVLLEL 326
>gi|104779394|ref|YP_605892.1| DNAse I-like hydrolase [Pseudomonas entomophila L48]
gi|95108381|emb|CAK13075.1| putative DNAse I-like hydrolase [Pseudomonas entomophila L48]
Length = 284
Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 23/118 (19%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L + + I V+ GD N + D L + PQ + + +
Sbjct: 180 ARQL-AYIRELIGGYRHQVLMGDMNTHATDLLDHSPL------RDLGLIAPQVEATFPSW 232
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + L+ S ++ + +S H P+ +E +
Sbjct: 233 RPQR-----------CLDHILLSPSLTLERVEVLAQP-----ISDHLPVAVEIRLPEA 274
>gi|223984111|ref|ZP_03634263.1| hypothetical protein HOLDEFILI_01555 [Holdemania filiformis DSM
12042]
gi|223963905|gb|EEF68265.1| hypothetical protein HOLDEFILI_01555 [Holdemania filiformis DSM
12042]
Length = 276
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 12/115 (10%), Positives = 31/115 (26%), Gaps = 11/115 (9%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
++ + L++ + P ++ GD N ++S K + L +
Sbjct: 165 REMQRLQQ------EKACPLILMGDLNTTMSSPSLQ--LLIKPENRLNLKPVYDSSAAFN 216
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + + + S S H P+
Sbjct: 217 TLHYGKGRLKEDRL---PIDYIYVSEDYDVRSTRIITTCFNGLYPSDHYPVICHL 268
>gi|260828432|ref|XP_002609167.1| hypothetical protein BRAFLDRAFT_92542 [Branchiostoma floridae]
gi|229294522|gb|EEN65177.1| hypothetical protein BRAFLDRAFT_92542 [Branchiostoma floridae]
Length = 429
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 39/125 (31%), Gaps = 7/125 (5%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ S+QG+ L K + G P V+ GDFN + + KM + +K
Sbjct: 302 LRSEQGKDLLKQTQKFSGKGTPVVLCGDFNAEPTEHVYSVMSQSKMKLNSAYKSLSDDKT 361
Query: 61 S---TCNVIKR----NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
S R + +LDY +D + S H
Sbjct: 362 SEPVYTTWTVRTDGEWRQTLDYIFFSKDKFQVETCLEIPPEELVGETRLPSHTYPSDHLS 421
Query: 114 LTIEY 118
L ++
Sbjct: 422 LVCDF 426
>gi|115689672|ref|XP_796533.2| PREDICTED: similar to CCR4 carbon catabolite repression 4-like
[Strongylocentrotus purpuratus]
gi|115945120|ref|XP_001179947.1| PREDICTED: similar to CCR4 carbon catabolite repression 4-like
[Strongylocentrotus purpuratus]
Length = 365
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 39/128 (30%), Gaps = 8/128 (6%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE-K 59
M ++QG+ L + + +P ++ GDFN + + ++ + ++
Sbjct: 237 MRAKQGQHLIEVLKK-CSKNLPLIVGGDFNAEPTEDVYSVYETSDLNLASAYKKLSEDGM 295
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ------SDLDTRRSKLSTHCP 113
+ + + + + S+ S S H
Sbjct: 296 QEPPYTTWKIRPRREECHTIDYMWYTQEHLEPVALLRFPGEKEIGSERLPSWSYPSDHLS 355
Query: 114 LTIEYDFE 121
L ++ F+
Sbjct: 356 LVCDFVFK 363
>gi|32476790|ref|NP_869784.1| hypothetical protein RB11105 [Rhodopirellula baltica SH 1]
gi|32447336|emb|CAD77162.1| probable secreted protein [Rhodopirellula baltica SH 1]
Length = 286
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 36/117 (30%), Gaps = 20/117 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q ++++ P ++ GDFN S + DG + +S
Sbjct: 187 EQATKVREFIRSL---SNPAILLGDFNDTPESRTVQ------LFQDGFVEADKPADDSFT 237
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++ +D+ + +++ + D D S H P+
Sbjct: 238 FSAEKPDREIDFLFASPE-------TQWTVKTVDVIDEPL----ASDHRPVMAVLQL 283
>gi|134295849|ref|YP_001119584.1| endonuclease/exonuclease/phosphatase [Burkholderia vietnamiensis
G4]
gi|134139006|gb|ABO54749.1| Endonuclease/exonuclease/phosphatase [Burkholderia vietnamiensis
G4]
Length = 284
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 11/102 (10%), Positives = 26/102 (25%), Gaps = 1/102 (0%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
++ GDFN +S + + + +
Sbjct: 184 AQPRDAIVCGDFNSAFDSDAYRR-MLEPIADAPSFVDAWVARHPGRTPPPTAGVYDTVQW 242
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
D + + +++ + S H P+ +E D
Sbjct: 243 SDGPLACDFVFVTETLLPRVTRCEIDGDVRASDHQPVVLELD 284
>gi|238855799|ref|ZP_04646091.1| exodeoxyribonuclease III [Lactobacillus jensenii 269-3]
gi|260665239|ref|ZP_05866088.1| exodeoxyribonuclease III [Lactobacillus jensenii SJ-7A-US]
gi|282933520|ref|ZP_06338892.1| exodeoxyribonuclease III [Lactobacillus jensenii 208-1]
gi|238831575|gb|EEQ23920.1| exodeoxyribonuclease III [Lactobacillus jensenii 269-3]
gi|260560976|gb|EEX26951.1| exodeoxyribonuclease III [Lactobacillus jensenii SJ-7A-US]
gi|281302366|gb|EFA94596.1| exodeoxyribonuclease III [Lactobacillus jensenii 208-1]
Length = 275
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 19/136 (13%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD----FWQKMDPDGLLIRFP 56
+QG W KK+ + Q++ P + +GD+N I +
Sbjct: 141 DRQG-WDKKYIEYLQELDVQKPVLASGDYNVAHEEIDLKHPENNHHSAGFTDEERADFTE 199
Query: 57 QEKESTCNVIKRNKSSLD--YFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLS---- 109
+ ++ ++ Y + + +NS + Y S+ + K S
Sbjct: 200 LLAAGFTDSFRKIHGNIPEVYSWWAQRIRTAKANNSGWRIDYWLTSNRIADKIKKSEMMD 259
Query: 110 -----THCPLTIEYDF 120
HCP+ +E +
Sbjct: 260 TGERADHCPIVLEIEL 275
>gi|115463669|ref|NP_001055434.1| Os05g0389500 [Oryza sativa Japonica Group]
gi|48926650|gb|AAT47439.1| 'unknown protein, contains endonuclease/exonuclease/phosphatase
family, PF03372' [Oryza sativa Japonica Group]
gi|113578985|dbj|BAF17348.1| Os05g0389500 [Oryza sativa Japonica Group]
gi|215686379|dbj|BAG87640.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704387|dbj|BAG93821.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215740790|dbj|BAG96946.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222631460|gb|EEE63592.1| hypothetical protein OsJ_18409 [Oryza sativa Japonica Group]
Length = 389
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 31/128 (24%), Gaps = 10/128 (7%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL-------I 53
+LS+ +K K +IAGDFN D
Sbjct: 257 ILSR-VTQFEKLISNKFNCKPSVMIAGDFNSTPGDKVYNYLVSANSDSTDEAPIKLRSLY 315
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQSDLDTRRSKLSTH 111
+ N +LDY + + S + S H
Sbjct: 316 AANGGEPEFTNCTPGFTGTLDYIFLSDGSSVKPTSLLRIPRGDSAEVQGGLPNFHHPSDH 375
Query: 112 CPLTIEYD 119
P+ ++
Sbjct: 376 LPIGADFQ 383
>gi|326406489|gb|ADZ63560.1| endonuclease/exonuclease/phosphatase family protein [Lactococcus
lactis subsp. lactis CV56]
Length = 352
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 7/124 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ---EK 59
QQ L + + G + D+N + + W K P L + +
Sbjct: 232 KQQLLTLFDEMKKYVSKGDYVICGADYNHALAGKAHPELTWMKEFPTENLTKGMRVVAPT 291
Query: 60 ESTCNVIKRNKSSLDY-FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ FL+ N+ + D + K S H P+ +++
Sbjct: 292 NAPTVRSLDYAYDKKNPKNTFGIIDGFLVSNNIKDLKIQTID---NQFKSSDHQPVVMDF 348
Query: 119 DFEK 122
+K
Sbjct: 349 SLKK 352
>gi|294949245|ref|XP_002786115.1| Apurinic endonuclease-redox protein, putative [Perkinsus marinus
ATCC 50983]
gi|239900243|gb|EER17911.1| Apurinic endonuclease-redox protein, putative [Perkinsus marinus
ATCC 50983]
Length = 372
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 29/120 (24%), Gaps = 20/120 (16%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD------------------FWQKMDPDGLLIRF--PQEK 59
P ++ GD N + + F + G F +
Sbjct: 243 DKPTLLLGDMNVADRDVDIWNVDKPHIPKSAGTTNEERESFREHYTSKGFTDTFVNMHPE 302
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ C ++ + F + + + + HCP+ I +
Sbjct: 303 ATGCFSYWSVRARNKPKNRGLRLDYVITAPGFPMDKIKDAFILEDFAPHGDHCPVGITFR 362
>gi|227893773|ref|ZP_04011578.1| exodeoxyribonuclease III [Lactobacillus ultunensis DSM 16047]
gi|227864418|gb|EEJ71839.1| exodeoxyribonuclease III [Lactobacillus ultunensis DSM 16047]
Length = 275
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF-------------- 42
L + + W +K+ D + + P + +GDFN I
Sbjct: 136 LRRLADRQVWDQKYVDYLEALDKQKPVLASGDFNCAHTEIDLKHPENNHHSAGFTDEERA 195
Query: 43 -WQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + G F + + +R +++ +L+ N +
Sbjct: 196 DFTNLLNGGFTDTFRKIHGNITDVYSWWAQRVRTAKAN-NSGWRIDYWLVSNRIADKVVR 254
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+DT + HCP+ +E +
Sbjct: 255 SEMIDTGKRA--DHCPILLEINL 275
>gi|187476631|ref|YP_784654.1| endonuclease/exonuclease/phosphatase family protein [Bordetella
avium 197N]
gi|115421217|emb|CAJ47722.1| putative endonuclease/exonuclease/phosphatase family protein
[Bordetella avium 197N]
Length = 286
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 35/152 (23%), Gaps = 35/152 (23%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNR---------------------KINSIGDTDD 41
+Q + L + ++ G P +IAGDFN + G
Sbjct: 137 QRQIQALTERIRAEVPDGAPLIIAGDFNDWGDKLAPQFVQQLGLYEVFSHAPRTSGGELP 196
Query: 42 FWQKMDPDGLLIRFPQEKES------------TCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
+ + +
Sbjct: 197 RLRDSLRRLTAALRGVPGNTVVLERGNQLGMDGTYCPLPPPRTFPAVFPWFRLDRIYQR- 255
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
F++ S + +KLS H PL E +
Sbjct: 256 GFAVRSARVLRG-RQWAKLSDHAPLLTELELP 286
>gi|171321352|ref|ZP_02910309.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria MEX-5]
gi|171093370|gb|EDT38560.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria MEX-5]
Length = 286
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 10/98 (10%), Positives = 26/98 (26%), Gaps = 1/98 (1%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+I GDFN S + + + + +
Sbjct: 190 IICGDFNSAFGSEAYRR-LLEPIADAPSFVDAWVARHPGNTPPPTAGVYDTVQWSEGPLA 248
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + +++ + S H P+ +E + +
Sbjct: 249 CDFVFVTATLLPRVTRCEIDGDVRASDHQPVVLELEVD 286
>gi|328863402|gb|EGG12502.1| hypothetical protein MELLADRAFT_46528 [Melampsora larici-populina
98AG31]
Length = 556
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 34/158 (21%), Gaps = 36/158 (22%)
Query: 1 MLSQQGEWLKKWADQKIKTGI-----------PFVIAGDFNRKINSIGDTDDFWQKMDPD 49
ML +Q E L + P ++ GDFN S G D
Sbjct: 397 MLIEQVENLADRFAKLPPRHSHSPKYQRGTEIPIIVCGDFNSVPTS-GVYDYLSHGNIEA 455
Query: 50 GLLIRFPQEKESTCN-----------------------VIKRNKSSLDYFVIDRD-NKNF 85
K +DY + +
Sbjct: 456 THDDFNSFNYGPYTQQGVQHPLKLKSAYSHLGELPFTNYTPGFKGVIDYIFYNEEVLDVT 515
Query: 86 LIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ ++ S H P+ E+ ++
Sbjct: 516 GVLGKIDETYLEKVVGFPNAHFASDHVPVLAEFKVKQN 553
>gi|300863989|ref|ZP_07108897.1| hypothetical protein OSCI_510002 [Oscillatoria sp. PCC 6506]
gi|300338010|emb|CBN54043.1| hypothetical protein OSCI_510002 [Oscillatoria sp. PCC 6506]
Length = 160
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 19/116 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q + ++A Q P V+ GDFN F++ M G L
Sbjct: 55 NKQLAAIGEYAAQIKN---PVVVVGDFNVT-----MWSPFYKSMVKTGGLRNARSGFGIL 106
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ ID+ ++ T R S H PL +
Sbjct: 107 PTW-----------PTNKPLLYIPIDHCLITKDIQVLNIRTGRKIGSDHLPLITDL 151
>gi|302766483|ref|XP_002966662.1| hypothetical protein SELMODRAFT_86257 [Selaginella moellendorffii]
gi|300166082|gb|EFJ32689.1| hypothetical protein SELMODRAFT_86257 [Selaginella moellendorffii]
Length = 334
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 29/134 (21%), Gaps = 25/134 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------------- 49
Q+ + ++AGDFN + +
Sbjct: 201 ISQEFNSNPVVLVAGDFNSTPGDRVYNYITSGRRNSGPDIELSSFKVPDLESLKVPAIPL 260
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDLDTRRSK 107
L Q + + N +LDY + D
Sbjct: 261 DSLYAAAQGEPAFTNCTPDFTGTLDYIFFSPSASMRPKTILEVPRPDAPDVKGGLPNHFH 320
Query: 108 LSTHCPLTIEYDFE 121
S H P+ ++
Sbjct: 321 PSDHLPIGADFSLS 334
>gi|291234349|ref|XP_002737107.1| PREDICTED: deoxyribonuclease I-like 3-like [Saccoglossus
kowalevskii]
Length = 446
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 3/100 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GDFN + + D + ++ D ++E V + +
Sbjct: 192 EDVIILGDFNAGCDYVKSKDWNYIRLRTDKRFTWLIDDRE-DTTVASTFCAYDRIVIGGT 250
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
+ + S ++ +D+ T S H P+ +
Sbjct: 251 TLEGAVWPKSSRVLYFDEKFDLTDDQAAAVSDHYPVEFKL 290
>gi|270291535|ref|ZP_06197756.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
gi|304385999|ref|ZP_07368340.1| endonuclease/exonuclease/phosphatase [Pediococcus acidilactici DSM
20284]
gi|270280032|gb|EFA25869.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
gi|304327922|gb|EFL95147.1| endonuclease/exonuclease/phosphatase [Pediococcus acidilactici DSM
20284]
Length = 300
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 18/121 (14%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +Q + L K + V+ GDFN N+ F + + ++
Sbjct: 198 IRQKQFKALAK--AMRKDNTPYKVLVGDFNADQNTTE-WKTFKKNFNITNGKDGIWRDTF 254
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
D + N + + S++ T +S S H PL +
Sbjct: 255 IG----------EDPTMNVNSIDNIITSKNI-----SISNIHTIKSTASDHVPLVADLTL 299
Query: 121 E 121
+
Sbjct: 300 K 300
>gi|265983749|ref|ZP_06096484.1| LOW QUALITY PROTEIN: endonuclease/exonuclease/phosphatase [Brucella
sp. 83/13]
gi|264662341|gb|EEZ32602.1| LOW QUALITY PROTEIN: endonuclease/exonuclease/phosphatase [Brucella
sp. 83/13]
Length = 361
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 250 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 302
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 303 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 351
>gi|332868399|ref|ZP_08438130.1| endonuclease/exonuclease/phosphatase family protein [Acinetobacter
baumannii 6013113]
gi|332733398|gb|EGJ64581.1| endonuclease/exonuclease/phosphatase family protein [Acinetobacter
baumannii 6013113]
Length = 812
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 38/145 (26%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +W + ++ GD N + Q ++
Sbjct: 635 KAVDQIVQWLAKNPTQVPKQNALLVGDMNSYAKEAPILAFEKANYKVLLNDAKVGQGAQA 694
Query: 62 TCNVIK--------RNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSD----- 100
V +LD+ + D D + + ++ Y++
Sbjct: 695 YSYVFGVASDANGNGGVGNLDHAIADADLYPKVVRTFAWHINADEPMVLDYNEEYKTDEQ 754
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D
Sbjct: 755 KALFYGEDAYRSSDHDPVIVDLDLN 779
>gi|302528187|ref|ZP_07280529.1| hypothetical protein SSMG_04569 [Streptomyces sp. AA4]
gi|302437082|gb|EFL08898.1| hypothetical protein SSMG_04569 [Streptomyces sp. AA4]
Length = 296
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 36/134 (26%), Gaps = 16/134 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRK--------------INSIGDTDDFWQKMDPD 49
+Q + L+++ + P ++ GD N + + + +++PD
Sbjct: 165 EQLKELREFVSRTAPPDAPVLLVGDLNVEYYAADARGVPGERGQDHADAAEAVGGRLEPD 224
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + S V + + + I + R S
Sbjct: 225 SDMHEHTFDSASNRLVARSQPGYRNVLDYVGSINENGLRPVPHITTRTVP--FRPRQPAS 282
Query: 110 THCPLTIEYDFEKG 123
H P+
Sbjct: 283 DHFPVLANVTLGPA 296
>gi|225427661|ref|XP_002270851.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 414
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 36/132 (27%), Gaps = 15/132 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL--------- 51
+LS+ + K K + ++AGDFN L
Sbjct: 279 LLSRLAQ-FKTVVSDKFECTPSVLVAGDFNSTPGDKVYQYLVSGNSSVPQLECLDGLPIP 337
Query: 52 ---LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDLDTRRS 106
+ F + + N ++LDY + S D +
Sbjct: 338 LCSVYDFTRGEPPFTNCTPDFTNTLDYIFFSPSGHIKPVSFLELPEPDSSDVAGGLPNHH 397
Query: 107 KLSTHCPLTIEY 118
S H P+ E+
Sbjct: 398 HPSDHLPIGAEF 409
>gi|258647674|ref|ZP_05735143.1| AP endonuclease domain protein [Prevotella tannerae ATCC 51259]
gi|260852503|gb|EEX72372.1| AP endonuclease domain protein [Prevotella tannerae ATCC 51259]
Length = 359
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 19/113 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ + + D+ G P ++ GDFN S ++ +
Sbjct: 262 DKVAAFIDRH--RGTPMIVCGDFNDTSISYAYRRVGKDL-------------TDAYVSTG 306
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S + I F+ + R K S H P+ ++
Sbjct: 307 RGFGRSFNRDAIFVRIDQMFCSEEFTPYAAYVDS----RIKCSDHYPIVAYFE 355
>gi|62085804|gb|AAX63293.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 32/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMSEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFKGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 263 ILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|325696280|gb|EGD38171.1| exodeoxyribonuclease [Streptococcus sanguinis SK160]
gi|332362319|gb|EGJ40119.1| exodeoxyribonuclease [Streptococcus sanguinis SK1056]
Length = 322
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 25/139 (17%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQK 45
+Q W K+A+ + P + GD+N I + +
Sbjct: 188 DRQV-WDAKYAEYLATLDEQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTN 246
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N + +
Sbjct: 247 LLAKGFTDTFRHLHGDIPNQYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMI 305
Query: 102 DTRRSKLSTHCPLTIEYDF 120
D+ + H P+ +E +
Sbjct: 306 DSGARQ--DHTPIVMEIEL 322
>gi|212711404|ref|ZP_03319532.1| hypothetical protein PROVALCAL_02477 [Providencia alcalifaciens DSM
30120]
gi|212685860|gb|EEB45388.1| hypothetical protein PROVALCAL_02477 [Providencia alcalifaciens DSM
30120]
Length = 297
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 29/99 (29%), Gaps = 11/99 (11%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++AGDFN + F E + + ID
Sbjct: 209 ILAGDFNSTAKEQPIEEIS-----------YFWNPVEKKGVNYRTWPAVNPAIDIDHIFT 257
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
++ D + SK+S H P+ E + ++
Sbjct: 258 YKGQVWDVKNMTIPTDSKDFQWSKVSDHLPVIAELELQE 296
>gi|330960376|gb|EGH60636.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 261
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 34/118 (28%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + L + ++ G P ++AGDFN + L E
Sbjct: 160 RQQLKLLAELM-ARLPEGEPVIVAGDFND-------WRQRADALLQGTGLYEVFVEHFGA 211
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + + NS S S S LS H PL +E
Sbjct: 212 P------AKSFPARLPLLRLDRVYVRNSTSHRPKVLSSRPW--SHLSDHAPLAVELTL 261
>gi|289665777|ref|ZP_06487358.1| endonuclease/exonuclease/phosphatase family protein [Xanthomonas
campestris pv. vasculorum NCPPB702]
Length = 303
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 26/118 (22%), Gaps = 6/118 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L + P VIAGDFN +++ + + + S
Sbjct: 181 KRQVTDLLDFVASN-SEQAPVVIAGDFNTAADTLD-----LEALRKGYGDSYGSVHRNSD 234
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V N D S H + +
Sbjct: 235 ATVSTLNMQVFDKPARIDHVFFQQNRLLAREARILFDTPYAEGRWASDHYGVWVRLQL 292
>gi|224539358|ref|ZP_03679897.1| hypothetical protein BACCELL_04263 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519019|gb|EEF88124.1| hypothetical protein BACCELL_04263 [Bacteroides cellulosilyticus
DSM 14838]
Length = 529
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 36/132 (27%), Gaps = 11/132 (8%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q+ E K+ + K ++ GD N + Q +
Sbjct: 307 QEAEATLKFIKEITKTYNDPDVLVVGDLNAYTCEDPIRTLENGGLVNLLTTYAPNQYSYA 366
Query: 62 TCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQSDLDTRR-SKLSTHC 112
+ LD+ + + + + + DQS + + S H
Sbjct: 367 YFSNGSYAVGYLDHSLATSTLEKQVTDARPFRINADEPQKMDVDQSGVQKDNMYRCSDHS 426
Query: 113 PLTIEYDFEKGN 124
P+ + G+
Sbjct: 427 PIVTFLNLGNGS 438
>gi|169796594|ref|YP_001714387.1| putative extracellular nuclease [Acinetobacter baumannii AYE]
gi|215484055|ref|YP_002326280.1| nuclease [Acinetobacter baumannii AB307-0294]
gi|301510758|ref|ZP_07235995.1| nuclease [Acinetobacter baumannii AB058]
gi|301595167|ref|ZP_07240175.1| nuclease [Acinetobacter baumannii AB059]
gi|332853534|ref|ZP_08434798.1| endonuclease/exonuclease/phosphatase family protein [Acinetobacter
baumannii 6013150]
gi|169149521|emb|CAM87410.1| putative extracellular nuclease [Acinetobacter baumannii AYE]
gi|213986940|gb|ACJ57239.1| nuclease [Acinetobacter baumannii AB307-0294]
gi|332728567|gb|EGJ59939.1| endonuclease/exonuclease/phosphatase family protein [Acinetobacter
baumannii 6013150]
Length = 812
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 38/145 (26%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +W + ++ GD N + Q ++
Sbjct: 635 KAVDQIVQWLAKNPTQVPKQNALLVGDMNSYAKEAPILAFEKANYKVLLNDAKVGQGAQA 694
Query: 62 TCNVIK--------RNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSD----- 100
V +LD+ + D D + + ++ Y++
Sbjct: 695 YSYVFGVASDANGNGGVGNLDHAIADADLYPKVVRTFAWHINADEPMVLDYNEEYKTDEQ 754
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D
Sbjct: 755 KALFYGEDAYRSSDHDPVIVDLDLN 779
>gi|163753669|ref|ZP_02160792.1| hypothetical protein KAOT1_18642 [Kordia algicida OT-1]
gi|161325883|gb|EDP97209.1| hypothetical protein KAOT1_18642 [Kordia algicida OT-1]
Length = 320
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 31/125 (24%), Gaps = 17/125 (13%)
Query: 15 QKIKTGIPFVIAGDFNRKIN---------SIGDTDDFWQKM-------DPDGLLIRFPQE 58
Q + +I GDFN + + + + G F Q
Sbjct: 196 QTEENDPHIIIMGDFNDDPTSESIQNYLMDTDLYNPMEKLLTIYKGSLNYRGEWNLFDQI 255
Query: 59 KESTCNVIKRNKSSLDYFV-IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+T + + I ++ + + S H P+ I
Sbjct: 256 IFTTNFFDYKKGTHSFASAAIFDEHFLTQWKGKYKGNPFRTYAGRRYLGGYSDHFPVYIR 315
Query: 118 YDFEK 122
F +
Sbjct: 316 LKFNR 320
>gi|238881455|gb|EEQ45093.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 359
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 23/130 (17%), Gaps = 30/130 (23%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P + GDFN + N +LI
Sbjct: 232 NDYPSFLCGDFNTEPNDEPYHILTKAGFKDGKILIDKKSAYGFET----TFTGFDINNEP 287
Query: 79 DRDNKNFLIDNSFSIVS--------------------------YDQSDLDTRRSKLSTHC 112
+ I+S + S H
Sbjct: 288 ISRIDYIWSPSFTRILSNSNNDTNQDSDDDNDNDESYEVTLKQFGILSNWFNGHHFSDHR 347
Query: 113 PLTIEYDFEK 122
P+ Y+ K
Sbjct: 348 PVVSTYELRK 357
>gi|166208515|gb|ABY84902.1| DNA lyase [Beauveria sp. GN-2004a]
Length = 576
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/155 (11%), Positives = 33/155 (21%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFN----------------------RKINSIGDT 39
+Q E L I G ++AGD N + S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVILAGDLNIIRSEMDSSNIGESLRKEGISMDEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + ++ ++ K + +
Sbjct: 203 RILNQLLFEGTVVGDRDDDRGRAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 263 ILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|172060778|ref|YP_001808430.1| endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
MC40-6]
gi|171993295|gb|ACB64214.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
MC40-6]
Length = 284
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 1/96 (1%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+I GDFN +S + + + + D
Sbjct: 190 IICGDFNSAFDSDAYRR-LLEPIADAPSFVDAWVGRHQGHTPPPTAGVYDTAQWSDGPLA 248
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + +++ + S H P+ +E D
Sbjct: 249 CDFVFVTDTLLPRVTRCEIDGDVRASDHQPVVLEVD 284
>gi|302830584|ref|XP_002946858.1| hypothetical protein VOLCADRAFT_56112 [Volvox carteri f.
nagariensis]
gi|300267902|gb|EFJ52084.1| hypothetical protein VOLCADRAFT_56112 [Volvox carteri f.
nagariensis]
Length = 355
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 10/106 (9%), Positives = 18/106 (16%), Gaps = 22/106 (20%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------------------FWQKMD 47
K+ G P ++ GD N I ++
Sbjct: 166 AFAKYVKGLESRGKPVIVTGDLNCAHKEIDIHAPKTNLRSAGFTVEERESFGRLLLGEVG 225
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI 93
+ +R FL +
Sbjct: 226 LVDTFRELFPCTVAYTYFTRRFNCREQNKGW--RLDYFLTSRALMP 269
>gi|319947397|ref|ZP_08021629.1| exodeoxyribonuclease [Streptococcus australis ATCC 700641]
gi|319746337|gb|EFV98598.1| exodeoxyribonuclease [Streptococcus australis ATCC 700641]
Length = 275
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 22/142 (15%), Positives = 39/142 (27%), Gaps = 31/142 (21%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQK 45
+Q W K+AD ++ P + GD+N I + +
Sbjct: 141 ERQI-WDAKYADYLAELDQQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTN 199
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI---VSYDQ 98
+ G F +R+K+S +L N + S
Sbjct: 200 LLAKGFTDTFRHLHGDLPDQYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVTKSAMI 258
Query: 99 SDLDTRRSKLSTHCPLTIEYDF 120
+ H P+ +E D
Sbjct: 259 DSGARQ-----DHTPIVMEIDL 275
>gi|302550593|ref|ZP_07302935.1| large secreted protein [Streptomyces viridochromogenes DSM 40736]
gi|302468211|gb|EFL31304.1| large secreted protein [Streptomyces viridochromogenes DSM 40736]
Length = 609
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 9/118 (7%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ + + + + GD N S + I+ E
Sbjct: 498 QQATLVNAFVKDILDTQKNADVIALGDINDFEFSRTAQ--LLEGRGELWSAIKSLPRSER 555
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N LD +I + +F S + ++S H P + +
Sbjct: 556 YSYTYQGNSQVLDQILISPSIRRDC---AFEYDSVHINAEF--NDQISDHDPQVLRFR 608
>gi|255322370|ref|ZP_05363516.1| putative endonuclease/exonuclease/phosphatase [Campylobacter showae
RM3277]
gi|255300743|gb|EET80014.1| putative endonuclease/exonuclease/phosphatase [Campylobacter showae
RM3277]
Length = 445
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 34/111 (30%), Gaps = 11/111 (9%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ V+ GDFN D + L + P+ + R +
Sbjct: 176 LKSTLIDAEKVVVLGDFNTPYGDKELLGDLATSKNLANLWVFLPKHE--------RYSHT 227
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + ++ + S+ + +++S H L +F+K
Sbjct: 228 SLNALDHVLLSKDALSQNYVLNSFKI---ERDGAQISDHFALVFRLNFDKN 275
>gi|239928478|ref|ZP_04685431.1| hypothetical protein SghaA1_09638 [Streptomyces ghanaensis ATCC
14672]
gi|291436804|ref|ZP_06576194.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291339699|gb|EFE66655.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 290
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 11/115 (9%), Positives = 28/115 (24%), Gaps = 22/115 (19%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ + P V+ GDFN + + W+++
Sbjct: 193 AAQVADMLEVLAADRGPKVLVGDFNAEATAAEL-APLWRRLRDAA-------PGGGGTYP 244
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + ++V + ++ S H P+ +
Sbjct: 245 ---------AVDPVKRIDLVTVSPDITVVGAE-----AVATRASDHRPVVADLRL 285
>gi|190575134|ref|YP_001972979.1| putative endonuclease/exonuclease/phosphatase family secreted
protein [Stenotrophomonas maltophilia K279a]
gi|190013056|emb|CAQ46688.1| putative endonuclease/exonuclease/phosphatase family secreted
protein [Stenotrophomonas maltophilia K279a]
Length = 294
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 5/120 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ Q E L ++ G P VIAGDFN +++ ++ D G +
Sbjct: 176 IRRSQVEDLLRFISA-TSAGAPVVIAGDFNALVDAGDLSELRSHYGDSYGSVHVNTDLSG 234
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ ++ I + + + S H + F
Sbjct: 235 VSTLNRHYYQAPSRIDHIFFQQDEMVAREAKILFDQPDDS----GRWASDHYGVWTRLQF 290
>gi|116254404|ref|YP_770242.1| phosphatase [Rhizobium leguminosarum bv. viciae 3841]
gi|115259052|emb|CAK10163.1| putative phosphatase [Rhizobium leguminosarum bv. viciae 3841]
Length = 288
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 37/140 (26%), Gaps = 30/140 (21%)
Query: 4 QQGEWLKKWADQKIKTG-----------------IPFVIAGDFNRKINSIGD------TD 40
+Q E+L + ++ G +VI GDFN + S
Sbjct: 152 RQLEFLNAHINAFVQEGGSLTGGGEFDLPEPPLPEDYVIMGDFNMEPESPEYCALAGAGG 211
Query: 41 DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQ 98
++ ++ G + ++ D+ + + S
Sbjct: 212 GYYGRVARIGTPVDAFAALKTYSPESYSWMDPEDH-GKRMHLDYCFVSCGLQSRLKSAWI 270
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
S H PL +E
Sbjct: 271 DTQSVG----SDHFPLWVEI 286
>gi|89069565|ref|ZP_01156909.1| extracellular nuclease [Oceanicola granulosus HTCC2516]
gi|89044900|gb|EAR50990.1| extracellular nuclease [Oceanicola granulosus HTCC2516]
Length = 1049
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 41/151 (27%), Gaps = 35/151 (23%)
Query: 6 GEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDT------DDFWQKMDPDGLLIRFPQ 57
+ L KW + +I GD N DD D L
Sbjct: 727 ADELVKWLATNPTGTSDADQLILGDLNAYAKEDPIDEIKAGADDMIGTADDFTDLATSFL 786
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNK--------NFLIDNSFSIVSYDQSDLDTRRS--- 106
+E+ +LDY + ++ + + S +SY+ + LD
Sbjct: 787 GEEAYSYRFSGQWGTLDYALANQPLLESVTGVTEWHINSDEPSYLSYNDNVLDPEERSFQ 846
Query: 107 ----------------KLSTHCPLTIEYDFE 121
S H P+ + D +
Sbjct: 847 VVPDPQEALFDADSPFASSDHDPILVGLDLD 877
>gi|163741919|ref|ZP_02149308.1| hypothetical protein RG210_05097 [Phaeobacter gallaeciensis 2.10]
gi|161384640|gb|EDQ09020.1| hypothetical protein RG210_05097 [Phaeobacter gallaeciensis 2.10]
Length = 333
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 2/117 (1%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L + D +P +I GD N + D D + + + +
Sbjct: 219 QFDRLLRAIDA-FAPDMPVLIGGDLNTGNHLPPDFDWQRETLFELARARGYDW-SATPDG 276
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
V R + F S + S +D LS H + +
Sbjct: 277 VTTRPSLITPHPDRQMKLDWFCTRGMRSTENRLVSSVDENGRPLSDHDAVWCRVALD 333
>gi|62085892|gb|AAX63337.1| DNA lyase [Cordyceps brongniartii]
Length = 580
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 17/156 (10%), Positives = 34/156 (21%), Gaps = 43/156 (27%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFW 43
+Q E L I G ++AGD N + + ++
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVILAGDLNIIRSEMDSSNIAESLRKEGILMDEWQSMPTR 202
Query: 44 QKMDP--------------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ ++ + F + K + +
Sbjct: 203 RILNQLLFEGSVIGDRDDDRERAVLWDICRCFHPTRLGMHTC-WDTKRNTRPANVGSRID 261
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 262 YILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|72161438|ref|YP_289095.1| hypothetical protein Tfu_1034 [Thermobifida fusca YX]
gi|71915170|gb|AAZ55072.1| conserved hypothetical protein [Thermobifida fusca YX]
Length = 232
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 30/124 (24%), Gaps = 15/124 (12%)
Query: 2 LSQQGEWLKKWADQKIK----TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ 57
L Q A Q + P V+A D N + + G
Sbjct: 117 LDLQARARYAHAAQLLAFLGMQPAPAVLAVDVNERP-DGPAWQMLATHLVDAG---AHGP 172
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E R +S +D +DR + + S H P+ E
Sbjct: 173 EGGEPTFPSWRPRSRIDTIFVDRRL-------TVRAAGIPAAPARRDLVAASDHLPVLAE 225
Query: 118 YDFE 121
Sbjct: 226 IALP 229
>gi|197104133|ref|YP_002129510.1| hypothetical protein PHZ_c0667 [Phenylobacterium zucineum HLK1]
gi|196477553|gb|ACG77081.1| hypothetical protein PHZ_c0667 [Phenylobacterium zucineum HLK1]
Length = 333
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 31/121 (25%), Gaps = 8/121 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-TDDFWQKMDPDGLLIRFPQEKEST 62
+Q + L + P V+ GDFN + + + ++
Sbjct: 199 RQTDELLAFIADHAAPDRPLVVGGDFNVRNAPDRYKYRAEARPYVVVAEFCHRHAAQCAS 258
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDF 120
+ + ++ +D + F + L S H + Y
Sbjct: 259 PH-----AAQNQPWLKSQDLQAFASPAGIDLRPVGVETLFDGGETPSLSDHAGYLVRYRL 313
Query: 121 E 121
Sbjct: 314 S 314
>gi|260906096|ref|ZP_05914418.1| 5'-nucleotidase domain-containing protein [Brevibacterium linens
BL2]
Length = 965
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 37/144 (25%), Gaps = 34/144 (23%)
Query: 4 QQGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L +A ++ + + GDFN Q G ++ +
Sbjct: 677 KQATSLVDFAGEQKEAADSDFVYLLGDFNAYTQEDP-----MQVFYEAGFKDVASEKTDK 731
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD--------------------- 100
+ V K SLD+ + + S+D
Sbjct: 732 STYVFKSRTGSLDHVLALDSSGGSGAQAELPSSSFDAITGADVWNINSVEALALEYSRFN 791
Query: 101 ------LDTRRSKLSTHCPLTIEY 118
+ + S H P+ +
Sbjct: 792 YNAGDFYAPDQFRASDHDPVVVGL 815
>gi|126723112|ref|NP_001075983.1| deoxyribonuclease-1 precursor [Equus caballus]
gi|77416419|sp|Q4AEE3|DNAS1_HORSE RecName: Full=Deoxyribonuclease-1; AltName: Full=Deoxyribonuclease
I; Short=DNase I; Flags: Precursor
gi|73532716|dbj|BAE19916.1| deoxyribonuclease I [Equus caballus]
Length = 282
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 34/106 (32%), Gaps = 3/106 (2%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
Q+ ++ GDFN + + + ++ + + + V + +
Sbjct: 177 QQKWDMEDIMLMGDFNAGCSYVTSSQWPSIRLRRNPAFWWLIPDT-ADTTVKSTHCAYDR 235
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSD--LDTRRSKLSTHCPLTIEY 118
V + ++ +S + + D +S H P+ +
Sbjct: 236 IVVAGTLLQEAVVPDSAVPFDFQAAYGLNDQTAEAISDHYPVEVTL 281
>gi|302419937|ref|XP_003007799.1| DNA-(apurinic or apyrimidinic site) lyase [Verticillium albo-atrum
VaMs.102]
gi|261353450|gb|EEY15878.1| DNA-(apurinic or apyrimidinic site) lyase [Verticillium albo-atrum
VaMs.102]
Length = 334
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 15/149 (10%), Positives = 27/149 (18%), Gaps = 41/149 (27%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIG------------------------------ 37
L + G ++ GD N + I
Sbjct: 175 ALDARVRNLVAAGKQVILTGDLNVSRSEIDTINLSEQLRKEDMTMDDWMAIPSRRLFNQL 234
Query: 38 --------DTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
D D ++ + F +++ K + L
Sbjct: 235 LFEGQVRGDRDPGREQPVLWDICRCFHPDRKGMFTC-WDTKRNTRPANNGARIDYLLCSA 293
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S HCP+
Sbjct: 294 GIKDW--FIDSNIQEGLHGSDHCPVYGTL 320
>gi|322421580|ref|YP_004200803.1| endonuclease/exonuclease/phosphatase [Geobacter sp. M18]
gi|320127967|gb|ADW15527.1| Endonuclease/exonuclease/phosphatase [Geobacter sp. M18]
Length = 258
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 16/118 (13%)
Query: 5 QGEWLK--KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L +W + P ++ GDFN + MD L +
Sbjct: 145 QAKVLAGPEWL-AHPECRPPVLLCGDFNALPSWSIHKRLKNALMDEQESLKFGHTKFTFP 203
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + I ++ S S H PL ++
Sbjct: 204 S------------NLPIVRFDHIFISPDLAVESELIPRTKLTTV-ASDHLPLIVKLRL 248
>gi|126730825|ref|ZP_01746634.1| extracellular nuclease [Sagittula stellata E-37]
gi|126708541|gb|EBA07598.1| extracellular nuclease [Sagittula stellata E-37]
Length = 1407
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 33/132 (25%), Gaps = 16/132 (12%)
Query: 6 GEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGD-TDDFWQKMDPDGLLIRFPQEKEST 62
L W G + + GD N D + + E+
Sbjct: 1274 AVELADWIANTYDGGGTTNYALLGDMNSYAEEDAVQYLDDNAGLVDLIDTFVPGGQDEAY 1333
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV------------SYDQSDLDTRRSKLS- 109
V + +LD + D + + + S++ D S
Sbjct: 1334 SYVFDGQRGTLDQGLADTALAAHVTGAAEWHINADEPGLIGYDTSFNDPDFYNDGVYASS 1393
Query: 110 THCPLTIEYDFE 121
H PL DF
Sbjct: 1394 DHDPLIFGLDFN 1405
>gi|71736423|ref|YP_275358.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298487634|ref|ZP_07005675.1| Endonuclease/exonuclease/phosphatase family protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|71556976|gb|AAZ36187.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298157726|gb|EFH98805.1| Endonuclease/exonuclease/phosphatase family protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 242
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ L + +++ G P ++AGDFN + L E+
Sbjct: 141 RQQLNLLAELM-ERLPEGEPVIVAGDFND-------WRQRADALLEGTGLHEVFVERFGA 192
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + N+ S S S LS H PL +E
Sbjct: 193 P------AKSFPARWPLLRLDRIYVRNATSHRPKVLSSRPW--SHLSDHAPLAVELTL 242
>gi|14861062|dbj|BAB62090.1| deoxyribonuclease I precursor [Bufo japonicus]
Length = 353
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 2/101 (1%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GD+N + + + ++ + L + E + + V
Sbjct: 180 EDILILGDYNAGCSYVKTSHWPNIRLRQESSLQWLIGDTEDSTVSTNTHCPYDRLVVGGA 239
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEYD 119
++ +I + +Y + T +S H P+ +E
Sbjct: 240 RFQDTVIPGTAKAFNYHVAYDLTYEMAKAVSDHYPVEMEIR 280
>gi|325954373|ref|YP_004238033.1| endonuclease/exonuclease/phosphatase [Weeksella virosa DSM 16922]
gi|323436991|gb|ADX67455.1| Endonuclease/exonuclease/phosphatase [Weeksella virosa DSM 16922]
Length = 320
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 19/117 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E +KK ++ ++ GD N + S K+ L F +
Sbjct: 223 QLELMKKDIEE--SDHENILLVGDLNCTLFSPNINKIKNDKLKDARLGFGFQNSWNAFVP 280
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + N + + + + ++ + D S H P+ E E
Sbjct: 281 IFRTN------------IDHIWVSKNIKVTNFYRGDFIE-----SDHFPIIAELKIE 320
>gi|163801448|ref|ZP_02195347.1| hypothetical protein 1103602000598_AND4_11284 [Vibrio sp. AND4]
gi|159174937|gb|EDP59737.1| hypothetical protein AND4_11284 [Vibrio sp. AND4]
Length = 447
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 10/119 (8%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSI-GDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
++I + AGDFN NS + ++ D E + +
Sbjct: 329 LTKQIPDDEAVIYAGDFNIDKNSDFSEYLLMLATLEVDPPAYMGYTEATFEPKINPYALA 388
Query: 72 ---------SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
LDY + +++ + + + + + LS H + + F+
Sbjct: 389 KYSGGEKSEFLDYVFVSLEHRRASKNTNTVKLKQRINKDQWGQWHLSDHFSVVGNFTFD 447
>gi|58336406|ref|YP_192991.1| exodeoxyribonuclease A [Lactobacillus acidophilus NCFM]
gi|227902538|ref|ZP_04020343.1| exodeoxyribonuclease A [Lactobacillus acidophilus ATCC 4796]
gi|58253723|gb|AAV41960.1| exodeoxyribonuclease A [Lactobacillus acidophilus NCFM]
gi|227869627|gb|EEJ77048.1| exodeoxyribonuclease A [Lactobacillus acidophilus ATCC 4796]
Length = 275
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 35/128 (27%), Gaps = 28/128 (21%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRFPQEK 59
Q++ P + +GD+N I + + G F +
Sbjct: 154 QELDKHKPVLASGDYNCAHTEIDLKHPNNNHHSAGFTDEERSGFTNLLNAGFTDTFRKVH 213
Query: 60 ES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV---SYDQSDLDTRRSKLSTHC 112
+ +R K++ +L+ N + S HC
Sbjct: 214 GNITDVYSWWAQRVKTAKIN-NSGWRIDYWLVSNRIANKVVRSEMIDTEKRA-----DHC 267
Query: 113 PLTIEYDF 120
P+ +E +
Sbjct: 268 PILLEINL 275
>gi|313608204|gb|EFR84229.1| exodeoxyribonuclease III [Listeria monocytogenes FSL F2-208]
Length = 102
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 9/89 (10%), Positives = 19/89 (21%), Gaps = 8/89 (8%)
Query: 36 IGDTDDFWQKMDPD---GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF 91
+ + F + ++ R + D
Sbjct: 18 SDEERAKFSAFLDAGFIDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKD 77
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+V S HCP+ +E +
Sbjct: 78 KLVDAKIH----ADVLGSDHCPVELELNL 102
>gi|307592282|ref|YP_003899873.1| endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 7822]
gi|306985927|gb|ADN17807.1| Endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 7822]
Length = 798
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 30/132 (22%), Gaps = 16/132 (12%)
Query: 5 QGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-----DGLLIRFPQ 57
Q L +W +I GD N T G Q
Sbjct: 637 QAIQLSQWLATNPTNSKTNYQIILGDLNSYAKEDPITTIESAGYINLDKQFGGNNTYSYQ 696
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD---------QSDLDTRRSKL 108
+ + S+ + + + ++ Y S
Sbjct: 697 FQGQFGTLDYGFSSASLLPFVTGATPWHINSDEPDVLGYSTAFKSPSQIDSIYSPDAFAS 756
Query: 109 STHCPLTIEYDF 120
S H PL I +F
Sbjct: 757 SDHDPLLIGLNF 768
>gi|159042300|ref|YP_001541552.1| exodeoxyribonuclease III Xth [Caldivirga maquilingensis IC-167]
gi|157921135|gb|ABW02562.1| exodeoxyribonuclease III Xth [Caldivirga maquilingensis IC-167]
Length = 237
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 25/117 (21%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIRFPQEK 59
+++ P +I GDFN + + + +
Sbjct: 127 ELRMRKPVIICGDFNAVYSRRDSSFWDDNHPGLTPLERQWLSEFIGKGFTDTFRLIHPNE 186
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
R L+ + + D LDT S H P+ +
Sbjct: 187 IKYSWRSYR------DRGKAMRIDYCLVSSELTNRVVDADILDTEG---SDHYPILL 234
>gi|312868313|ref|ZP_07728513.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
parasanguinis F0405]
gi|311096058|gb|EFQ54302.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
parasanguinis F0405]
Length = 270
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 29/101 (28%), Gaps = 2/101 (1%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
G PF++AGDFN G ++ I + K + V D V
Sbjct: 172 GKPFILAGDFNNPAGQEGYETILSSPLELQDSFIEAKETKGTYT-VGPGIDGWTDNQV-P 229
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ I +S +S H L E
Sbjct: 230 LRIDYVFASPEWDIQRLHVIFDGQNKSHVSDHYGLEAELSL 270
>gi|237747027|ref|ZP_04577507.1| endonuclease/exonuclease/phosphatase [Oxalobacter formigenes
HOxBLS]
gi|229378378|gb|EEO28469.1| endonuclease/exonuclease/phosphatase [Oxalobacter formigenes
HOxBLS]
Length = 264
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 9/123 (7%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + P +IAGDFN N+ +D + + + + +E
Sbjct: 142 RQTHALIDTVQRSAPNDAPVIIAGDFNDWNNN--LSDLLRKTLRVKEVFDEMAEREERKK 199
Query: 64 NVIKRNKSSLDYFVI---DRDNKNFLIDNSFSIVSYDQSDLDT----RRSKLSTHCPLTI 116
+ R + + F + + + + LS H PL
Sbjct: 200 SFFPRLTGKVPKPLPARTFPALFPFFRLDRIYVRGFQVDSACVMQGSPWTALSDHAPLVA 259
Query: 117 EYD 119
Sbjct: 260 SLR 262
>gi|194366452|ref|YP_002029062.1| endonuclease/exonuclease/phosphatase [Stenotrophomonas maltophilia
R551-3]
gi|194349256|gb|ACF52379.1| Endonuclease/exonuclease/phosphatase [Stenotrophomonas maltophilia
R551-3]
Length = 297
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 34/123 (27%), Gaps = 5/123 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ Q E L ++ P VIAGDFN +++ ++ + D G +
Sbjct: 179 IRRTQVEDLLRFITATSAA-APVVIAGDFNALVDAGDLSELRSRYGDSYGSVHVNTDLAG 237
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ ++ I + + + S H + F
Sbjct: 238 VSTLNRHYYQAPSRIDHIFFQQDEMVAREAKILFDQPDDS----GRWASDHYGVWTRLQF 293
Query: 121 EKG 123
Sbjct: 294 APS 296
>gi|62085790|gb|AAX63286.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 34/156 (21%), Gaps = 43/156 (27%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFW 43
+Q E L I G V+AGD N + + ++
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 44 QKMDP--------------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ ++ + F + K + +
Sbjct: 203 RILNQLLFEGTVIGDRDDDRECAVLWDICRCFHPTRLGMHTC-WDTKRNTRPANVGSRID 261
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 262 YILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085822|gb|AAX63302.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 34/156 (21%), Gaps = 43/156 (27%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFW 43
+Q E L I G V+AGD N + + ++
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 44 QKMDP--------------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ ++ + F + K + +
Sbjct: 203 RILNQLLFGGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTC-WDTKRNTRPANVGSRID 261
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 262 YILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085798|gb|AAX63290.1| DNA lyase [Beauveria bassiana]
gi|62085850|gb|AAX63316.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 34/156 (21%), Gaps = 43/156 (27%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFW 43
+Q E L I G V+AGD N + + ++
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 44 QKMDP--------------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ ++ + F + K + +
Sbjct: 203 RILNQLLFGGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTC-WDTKRNTRPANVGSRID 261
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 262 YILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085788|gb|AAX63285.1| DNA lyase [Beauveria bassiana]
gi|62085830|gb|AAX63306.1| DNA lyase [Beauveria bassiana]
gi|62085840|gb|AAX63311.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 34/156 (21%), Gaps = 43/156 (27%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFW 43
+Q E L I G V+AGD N + + ++
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 44 QKMDP--------------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ ++ + F + K + +
Sbjct: 203 RILNQLLFGGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTC-WDTKRNTRPANVGSRID 261
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 262 YILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085874|gb|AAX63328.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 34/156 (21%), Gaps = 43/156 (27%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFW 43
+Q E L I G V+AGD N + + ++
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 44 QKMDP--------------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ ++ + F + K + +
Sbjct: 203 RILNQLLFGGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTC-WDTKRNTRPANVGSRID 261
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 262 YILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085808|gb|AAX63295.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 34/156 (21%), Gaps = 43/156 (27%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFW 43
+Q E L I G V+AGD N + + ++
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 44 QKMDP--------------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ ++ + F + K + +
Sbjct: 203 RILNQLLFGGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTC-WDTKRNTRPANVGSRID 261
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 262 YILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|62085786|gb|AAX63284.1| DNA lyase [Beauveria bassiana]
gi|62085844|gb|AAX63313.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 34/156 (21%), Gaps = 43/156 (27%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFW 43
+Q E L I G V+AGD N + + ++
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 44 QKMDP--------------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ ++ + F + K + +
Sbjct: 203 RILNQLLFEGTVIGDRDDDRERAVLWDICRCFHPTRLGMHTC-WDTKRNTRPANVGSRID 261
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 262 YILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|237749180|ref|ZP_04579660.1| endonuclease/exonuclease/phosphatase [Oxalobacter formigenes
OXCC13]
gi|229380542|gb|EEO30633.1| endonuclease/exonuclease/phosphatase [Oxalobacter formigenes
OXCC13]
Length = 264
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 9/125 (7%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + P +IAGDFN N + + + + ++
Sbjct: 142 RQTRALIRTVQASAPKDAPVIIAGDFNDWNN--KLSGFLMRTLQVKEVFDELDMKQNGKR 199
Query: 64 NVIKRNKSSLDYF---VIDRDNKNFLIDNSFSIVSYDQSDLDT----RRSKLSTHCPLTI 116
+ R + F + + ++ + LS H PL
Sbjct: 200 SYFPRLTGQVPKPVAARTFPALFPFFRLDRIYVRGFEVDSASVMQGSPWTSLSDHAPLVA 259
Query: 117 EYDFE 121
+
Sbjct: 260 SLRIK 264
>gi|298491351|ref|YP_003721528.1| endonuclease/exonuclease/phosphatase ['Nostoc azollae' 0708]
gi|298233269|gb|ADI64405.1| Endonuclease/exonuclease/phosphatase ['Nostoc azollae' 0708]
Length = 256
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 28/117 (23%), Gaps = 9/117 (7%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ G L + + ++ GDFN ++ D L ++++
Sbjct: 145 RELGAALVILRLMEFPSEDYLLLTGDFNANPTTLARMILADNYKIQDALATLPLDKQKTF 204
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
D F I S H P+ ++
Sbjct: 205 HEFTG---------EAWDAIDTIYCDRRFQIEQVIIDRQQWEDIWPSDHFPVIVKLQ 252
>gi|147919368|ref|YP_686896.1| endonuclease/exonuclease [uncultured methanogenic archaeon RC-I]
gi|110622292|emb|CAJ37570.1| predicted endonuclease/exonuclease [uncultured methanogenic
archaeon RC-I]
Length = 294
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 34/134 (25%), Gaps = 29/134 (21%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIG-------------------DTDDFWQKMD 47
+ L ++A +K+KTG +IAGDFN +N+ + + +
Sbjct: 170 DALIEYAREKLKTGSEAIIAGDFNTGLNAEDRSHNTDSYYLSDRMAYLKRLKNSHGEGLA 229
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-S 106
E + + R S
Sbjct: 230 DAWRKFHPEPGPEDYTWFLGNRG---------FRLDYVFLTPGLGKRLSGVEYSHEERVS 280
Query: 107 KLSTHCPLTIEYDF 120
LS H + +
Sbjct: 281 GLSDHSMVLADIRL 294
>gi|54696842|gb|AAV38793.1| deoxyribonuclease I-like 1 [Homo sapiens]
gi|61355625|gb|AAX41159.1| deoxyribonuclease I-like 1 [synthetic construct]
Length = 302
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 30/105 (28%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN S+ ++ + + E T + + +
Sbjct: 173 QSKDVILLGDFNADCASLTKKRLDKLELRTEPGFHWVIADGEDTTVRASTHCTYDRVVLH 232
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ L + + +S H P+ +E +
Sbjct: 233 GERCRSLLHTAAVFDFPTSFQLTEEEALNISDHYPVEVELKLSQA 277
>gi|78048060|ref|YP_364235.1| endonuclease/exonuclease/phosphatase family protein [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|325927483|ref|ZP_08188725.1| metal-dependent hydrolase [Xanthomonas perforans 91-118]
gi|78036490|emb|CAJ24181.1| endonuclease/exonuclease/phosphatase family protein [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|325542146|gb|EGD13646.1| metal-dependent hydrolase [Xanthomonas perforans 91-118]
Length = 298
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 33/122 (27%), Gaps = 10/122 (8%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ ++Q L + P VIAGDFN +++ + + +
Sbjct: 174 IRTRQVADLLDFIASN-SAQAPVVIAGDFNTAADTLDLQ-ALRKGYGDSYGSVHRNSDAT 231
Query: 61 STCNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + +D+ ++ Y S H + +
Sbjct: 232 VSTLNMHIFDRPARIDHVFFQQNRLLAREARILFEAPY------AEGRWASDHYGVWVRL 285
Query: 119 DF 120
Sbjct: 286 QL 287
>gi|322390094|ref|ZP_08063629.1| RgfB protein [Streptococcus parasanguinis ATCC 903]
gi|321143221|gb|EFX38664.1| RgfB protein [Streptococcus parasanguinis ATCC 903]
Length = 270
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 28/101 (27%), Gaps = 2/101 (1%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
G PF++AGDFN G + I + K + V D V
Sbjct: 172 GKPFILAGDFNNPAGQEGYETILSSSLKLQDSFIEAKETKGTYT-VGPGIDGWTDNQV-P 229
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ I D + +S H L E
Sbjct: 230 LRIDYVFASPEWDIQRLHVIFDDQNKPHVSDHYGLEAELSL 270
>gi|163842897|ref|YP_001627301.1| hypothetical protein BSUIS_A0652 [Brucella suis ATCC 23445]
gi|261221829|ref|ZP_05936110.1| endonuclease/exonuclease/phosphatase [Brucella ceti B1/94]
gi|265997794|ref|ZP_06110351.1| endonuclease/exonuclease/phosphatase [Brucella ceti M490/95/1]
gi|163673620|gb|ABY37731.1| Hypothetical protein BSUIS_A0652 [Brucella suis ATCC 23445]
gi|260920413|gb|EEX87066.1| endonuclease/exonuclease/phosphatase [Brucella ceti B1/94]
gi|262552262|gb|EEZ08252.1| endonuclease/exonuclease/phosphatase [Brucella ceti M490/95/1]
Length = 358
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 247 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 299
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 300 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 348
>gi|57640238|ref|YP_182716.1| membrane-bound metal-dependent hydrolase [Thermococcus kodakarensis
KOD1]
gi|57158562|dbj|BAD84492.1| membrane-bound metal-dependent hydrolase [Thermococcus kodakarensis
KOD1]
Length = 583
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 30/117 (25%), Gaps = 20/117 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E L +A+ + VI GD N + + + +E+
Sbjct: 487 QAEELLSFAESEPAAH---VILGDTNAEPDEKAIQIITQE-------YKDAFEERPPYTF 536
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
N +D ID ++S H P+ +
Sbjct: 537 ----NWGDIDIENIDYILLRRGWPAKVK------DYGCLCEVEVSDHRPVWALIELP 583
>gi|115351807|ref|YP_773646.1| endonuclease/exonuclease/phosphatase [Burkholderia ambifaria AMMD]
gi|115281795|gb|ABI87312.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria AMMD]
Length = 286
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 11/98 (11%), Positives = 28/98 (28%), Gaps = 1/98 (1%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+I GDFN +S + + + + + D
Sbjct: 190 IICGDFNSAFDSDAYRR-LLEPIADAPSFVDAWVARHAGHTPPPTAGVYDTAQWSDGPLA 248
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + +++ + S H P+ +E + +
Sbjct: 249 CDFVFVTDTLLPRVTRCEIDGDVRASDHQPVVLEVEVD 286
>gi|312870577|ref|ZP_07730692.1| exodeoxyribonuclease III [Lactobacillus oris PB013-T2-3]
gi|311093892|gb|EFQ52221.1| exodeoxyribonuclease III [Lactobacillus oris PB013-T2-3]
Length = 275
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDGL 51
+ + Q + P + +GDFN I
Sbjct: 150 RDYLHQ-LDEQKPVIASGDFNVAHEEIDLAHPANNHHSAGFTDEERSHFGQLLAAGFTDS 208
Query: 52 LIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
E+ + +R +S +L+ N + S +D+ +
Sbjct: 209 FRFLHPEEAGAYSWWAQRVLTSKQN-NSGWRIDYWLVSNRLADRVSSSSMIDSGERR--D 265
Query: 111 HCPLTIEYDF 120
H P+ +E D
Sbjct: 266 HTPIMLEIDL 275
>gi|294777115|ref|ZP_06742572.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
vulgatus PC510]
gi|294448984|gb|EFG17527.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
vulgatus PC510]
Length = 450
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 11/112 (9%), Positives = 28/112 (25%), Gaps = 13/112 (11%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GD N D + + + + LD+ +
Sbjct: 343 EDTDVLVLGDLNSYGMEDAIKVFT----DAGYINLLKKYSPAAWSYCYRGEVGYLDHSLS 398
Query: 79 DRDNKNFLIDNSFSIVSYD---------QSDLDTRRSKLSTHCPLTIEYDFE 121
+ ++ + ++ S + S H P+ + E
Sbjct: 399 SPTLTSQIVGAAPWDINASEPAYWGFKYTSYYREDLYRSSDHNPVITWVNLE 450
>gi|227486633|ref|ZP_03916949.1| exodeoxyribonuclease III [Anaerococcus lactolyticus ATCC 51172]
gi|227235345|gb|EEI85360.1| exodeoxyribonuclease III [Anaerococcus lactolyticus ATCC 51172]
Length = 275
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 35/129 (27%), Gaps = 23/129 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIR 54
+ + P + AGDFN I + + G
Sbjct: 150 ADYLKS-LDQNKPVIAAGDFNVAHEEIDLAHPENNHESPGFTDEEREGFTNLLAKGFTDT 208
Query: 55 FPQ----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + +R K+S FL+ + + +D+ +
Sbjct: 209 FRHIHGRVEGKYTWWAQRVKTSKIN-NSGWRIDYFLVSERIKDLITNSDMIDSGERQ--D 265
Query: 111 HCPLTIEYD 119
H P+ +E +
Sbjct: 266 HTPIVLEIN 274
>gi|225627129|ref|ZP_03785167.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
gi|225617964|gb|EEH15008.1| Hypothetical protein, conserved [Brucella ceti str. Cudo]
Length = 358
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 247 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 299
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 300 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 348
>gi|148559397|ref|YP_001258615.1| AP endonuclease domain-containing protein [Brucella ovis ATCC
25840]
gi|261315157|ref|ZP_05954354.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis
M163/99/10]
gi|261317287|ref|ZP_05956484.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis B2/94]
gi|265988325|ref|ZP_06100882.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis
M292/94/1]
gi|148370654|gb|ABQ60633.1| AP endonuclease family 1 domain protein [Brucella ovis ATCC 25840]
gi|261296510|gb|EEY00007.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis B2/94]
gi|261304183|gb|EEY07680.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis
M163/99/10]
gi|264660522|gb|EEZ30783.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis
M292/94/1]
Length = 357
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 246 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 298
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 299 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 347
>gi|323508160|emb|CBQ68031.1| related to APN2-AP endonuclease, exonuclease III homolog
[Sporisorium reilianum]
Length = 737
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 32/136 (23%), Gaps = 27/136 (19%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD--------------------TDDFWQKM 46
+ L + A + I+ G +I GD N + I F +
Sbjct: 170 QGLAERAHRLIQAGRQVMIVGDMNIIRDPIDHCDAEQSMKEYGWDHFHQHPARSWFQTFL 229
Query: 47 DPDGLL----IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
P G + E++ L+
Sbjct: 230 APHGKFHDVGRLYHPERKKMFTC-WNTLIDARPANYGVRLDYTLVTEGLLDWIKGADIQP 288
Query: 103 TRRSKLSTHCPLTIEY 118
S HCP+ ++
Sbjct: 289 --DVYGSDHCPIYVDL 302
>gi|50540416|ref|NP_001002674.1| deoxyribonuclease-1 [Danio rerio]
gi|49903846|gb|AAH76479.1| Zgc:92440 [Danio rerio]
Length = 278
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 8/120 (6%)
Query: 4 QQGEWLKKWA---DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
Q+ + L Q++ T ++ GDFN + ++ ++ D +
Sbjct: 161 QEIDALHDVVLDTRQRLNTN-NIMLLGDFNAGCRYVSNSAWANIRLRTDQSYTWLIPDS- 218
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
+ V N V D + S + + ++ ++ L S H P+ ++
Sbjct: 219 ADTTVTHTNCPYDR-IVATPDMMRGVAPGSAQVFDFMEAHGLSQDWALAVSDHFPVEVKL 277
>gi|88802681|ref|ZP_01118208.1| endonuclease/exonuclease/phosphatase family protein [Polaribacter
irgensii 23-P]
gi|88781539|gb|EAR12717.1| endonuclease/exonuclease/phosphatase family protein [Polaribacter
irgensii 23-P]
Length = 329
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 10/120 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L QQ K++ + ++ GDFN S + F Q+ + I + +
Sbjct: 220 LKQQF---KRFLKE--DKNKNILVLGDFNSVQGSEEI-NLFLQEKNKREKFIDPLPDS-A 272
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ K LDY +I+ + S + S + ++S H P+TI + +
Sbjct: 273 MTHTSDAPKRRLDYVLINTNMYKEYKVGSAKVSSLF---SPLKMREISDHLPVTINFTIK 329
>gi|312892184|ref|ZP_07751681.1| Endonuclease/exonuclease/phosphatase [Mucilaginibacter paludis DSM
18603]
gi|311295314|gb|EFQ72486.1| Endonuclease/exonuclease/phosphatase [Mucilaginibacter paludis DSM
18603]
Length = 369
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 21/117 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q +K Q P+++AGDFN +S +M + +
Sbjct: 274 QVTMMKDHMAQ---CPYPYIVAGDFNDTPSSYAVN-----QMSKGIKNAFREKGRGLG-- 323
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + L+ F +++Y KLS H P+ + +
Sbjct: 324 --RTYNGDIPN----YQIDYILVSPQFDVLNYTVI-----EKKLSDHYPIRSDLLLK 369
>gi|299067973|emb|CBJ39187.1| putative metal dependent endonuclease/phosphatase [Ralstonia
solanacearum CMR15]
Length = 248
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 13/117 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L + + T P V+AGDFN N + Q + + + +
Sbjct: 143 RRQAEALIERVCSVVPTDAPLVVAGDFNDWNNRLD--RVICQSLGVTEVADKAVSARPLR 200
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + ++ S H PL E
Sbjct: 201 TFPSH---------LPWLRLDRIYVRGF--EIDRAHALTGRDWAQRSDHVPLLAELS 246
>gi|115440517|ref|NP_001044538.1| Os01g0801100 [Oryza sativa Japonica Group]
gi|113534069|dbj|BAF06452.1| Os01g0801100 [Oryza sativa Japonica Group]
Length = 310
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 25/121 (20%), Gaps = 21/121 (17%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL-----------------LIRFPQEK 59
++ P ++AGD N SI + + Q
Sbjct: 194 LEKSKPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIEERESFETNFSSKGLVDTFRKQHP 253
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + FL S + S H P+ +
Sbjct: 254 NAVGYTFWGENQRITNKGW--RLDYFLASESITDK--VHDSYILPDVSFSDHSPIGLVLK 309
Query: 120 F 120
Sbjct: 310 L 310
>gi|88860944|ref|ZP_01135580.1| hypothetical protein PTD2_10358 [Pseudoalteromonas tunicata D2]
gi|88817157|gb|EAR26976.1| hypothetical protein PTD2_10358 [Pseudoalteromonas tunicata D2]
Length = 877
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 31/129 (24%), Gaps = 21/129 (16%)
Query: 8 WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L +W VI GD N T +
Sbjct: 643 QLTQWIATTPTNVADSDVVILGDMNAYAMEDPITTYEANGFINLKKA--IHGNTYDYSYI 700
Query: 66 IKRNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYD---------QSDLDTRRSKL 108
+ SLD+ + + + I+ Y+ S + +
Sbjct: 701 YQGLMGSLDHALASSTMAEKVTGITDWHINADEPIILDYNLEYKTEQQKTSLYASNAYRA 760
Query: 109 STHCPLTIE 117
S H P+ IE
Sbjct: 761 SDHDPIIIE 769
>gi|265994574|ref|ZP_06107131.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 3
str. Ether]
gi|262765687|gb|EEZ11476.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 3
str. Ether]
Length = 358
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 247 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 299
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 300 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 348
>gi|261751955|ref|ZP_05995664.1| endonuclease/exonuclease/phosphatase [Brucella suis bv. 5 str. 513]
gi|261741708|gb|EEY29634.1| endonuclease/exonuclease/phosphatase [Brucella suis bv. 5 str. 513]
Length = 357
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 246 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 298
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 299 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 347
>gi|301114885|ref|XP_002999212.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Phytophthora
infestans T30-4]
gi|262111306|gb|EEY69358.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Phytophthora
infestans T30-4]
Length = 482
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 16/157 (10%), Positives = 31/157 (19%), Gaps = 50/157 (31%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-------------QKMDPD------ 49
L+ + ++ GD N I D +K
Sbjct: 161 LEDRVNALRAANKRVIVVGDINIAHREIDHCDPHAHRDDGSSFGDHPCRKWMDSFVGVSG 220
Query: 50 ----------------------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFL 86
F + ++ + + + D
Sbjct: 221 EKYLPNPHSDDIVDGEPAVKMIDTYRHFHPDQTKAYTCWNTQTGARQTNYGTRIDYILAD 280
Query: 87 IDNSFSIVSYDQSDLDTRRSKLSTHCPL----TIEYD 119
+ S S HCP+ T+E +
Sbjct: 281 PTFIECVSSCSIDAERLG----SDHCPVLMSCTVELE 313
>gi|295839581|ref|ZP_06826514.1| endonuclease/exonuclease/phosphatase [Streptomyces sp. SPB74]
gi|197696835|gb|EDY43768.1| endonuclease/exonuclease/phosphatase [Streptomyces sp. SPB74]
Length = 614
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 32/118 (27%), Gaps = 14/118 (11%)
Query: 5 QGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + Q + V+ GD N S K+ G+ E+
Sbjct: 507 QAASVNAFVRQLTALDAKARVVVLGDLNDFEFSATTKALTKGKVLRPGIERLPADER--Y 564
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYD 119
V Y + L+ + +YD + S H P + +
Sbjct: 565 TYV---------YQGNSQVLDQILVSKGITSFTYDSVHINAEFAQQNSDHDPQLLRFR 613
>gi|163739556|ref|ZP_02146966.1| hypothetical protein RGBS107_08350 [Phaeobacter gallaeciensis
BS107]
gi|161387309|gb|EDQ11668.1| hypothetical protein RGBS107_08350 [Phaeobacter gallaeciensis
BS107]
Length = 333
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 2/117 (1%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L + D +P +I GD N + D D + + + +
Sbjct: 219 QFDRLLRAIDA-FAPDMPVLIGGDLNTGNHLPPDFDWQRETLFELARAQGYDW-SATPGG 276
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
V R + F S + S +D LS H + +
Sbjct: 277 VTTRPSLITPHPDRQMKLDWFCTRGMRSTENRLVSSVDENGRPLSDHDAVWCRVALD 333
>gi|319784539|ref|YP_004144015.1| endonuclease/exonuclease/phosphatase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317170427|gb|ADV13965.1| Endonuclease/exonuclease/phosphatase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 348
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 27/118 (22%), Gaps = 13/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + + G ++AGD N S L
Sbjct: 218 REQYWQIGELTEPLSALGETAIMAGDCNAAPWSAAVRRVAA-------LGGLTVMPSAGP 270
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ R L +I S S H P+ +E+
Sbjct: 271 TWIHIRLPDFLR-RFAGLPIDQVFSKGGVTIHSA-----TRLEDTGSDHLPVMVEFSL 322
>gi|169620123|ref|XP_001803473.1| hypothetical protein SNOG_13263 [Phaeosphaeria nodorum SN15]
gi|160703966|gb|EAT79147.2| hypothetical protein SNOG_13263 [Phaeosphaeria nodorum SN15]
Length = 605
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 24/102 (23%), Gaps = 5/102 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+ AGDFN D E E + N LD+
Sbjct: 506 DKNARVITAGDFNEFTFVEPLKQYVQISGLRDADAADKIDELERYTYLFDMNAQQLDHMF 565
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + +++S H P D
Sbjct: 566 VSDS-----VAKKIKYEHVHVNTWPEFAAQVSDHDPSVARVD 602
>gi|116329336|ref|YP_799056.1| sphingomyelinase C precursor [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116330061|ref|YP_799779.1| sphingomyelinase C precursor [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|130088|sp|P17627|PHL_LEPIN RecName: Full=Sphingomyelinase C; AltName: Full=Sphingomyelin
phosphodiesterase; Short=SMase; Flags: Precursor
gi|44013|emb|CAA36424.1| unnamed protein product [Leptospira interrogans]
gi|116122080|gb|ABJ80123.1| Sphingomyelinase C precursor [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116123750|gb|ABJ75021.1| Sphingomyelinase C precursor [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 556
Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 10/121 (8%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKINSIGDTDDF--WQKMDPDGLLIRFPQEKES 61
Q ++ + D +KI +IAGD N S +P + + F + ++
Sbjct: 248 QFNEIRDFIDSKKIPKNEMVLIAGDLNVIKGSREYHQMLCILNVNNPKYVGVPFTWDTKT 307
Query: 62 T----CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL---STHCPL 114
K + LDY + + + I + + + S H P+
Sbjct: 308 NEIAAFYYKKVEPAYLDYIFVSKSHFQPPIWQNLAYDPISAKTWTAKGYTSDEFSDHYPV 367
Query: 115 T 115
Sbjct: 368 Y 368
>gi|254718771|ref|ZP_05180582.1| AP endonuclease domain-containing protein [Brucella sp. 83/13]
gi|306837488|ref|ZP_07470363.1| AP endonuclease domain-containing protein [Brucella sp. NF 2653]
gi|306407380|gb|EFM63584.1| AP endonuclease domain-containing protein [Brucella sp. NF 2653]
Length = 322
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 211 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 263
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 264 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 312
>gi|254701416|ref|ZP_05163244.1| AP endonuclease domain-containing protein [Brucella suis bv. 5 str.
513]
gi|254707661|ref|ZP_05169489.1| AP endonuclease domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|254709756|ref|ZP_05171567.1| AP endonuclease domain-containing protein [Brucella pinnipedialis
B2/94]
gi|256031246|ref|ZP_05444860.1| AP endonuclease domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|256159357|ref|ZP_05457140.1| AP endonuclease domain-containing protein [Brucella ceti M490/95/1]
gi|256254654|ref|ZP_05460190.1| AP endonuclease domain-containing protein [Brucella ceti B1/94]
gi|256369061|ref|YP_003106569.1| AP endonuclease family 1 domain protein [Brucella microti CCM 4915]
gi|294851991|ref|ZP_06792664.1| AP endonuclease domain-containing protein [Brucella sp. NVSL
07-0026]
gi|255999221|gb|ACU47620.1| AP endonuclease family 1 domain protein [Brucella microti CCM 4915]
gi|294820580|gb|EFG37579.1| AP endonuclease domain-containing protein [Brucella sp. NVSL
07-0026]
Length = 322
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 211 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 263
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 264 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 312
>gi|308070047|ref|YP_003871652.1| extracellular nuclease [Paenibacillus polymyxa E681]
gi|305859326|gb|ADM71114.1| Predicted extracellular nuclease [Paenibacillus polymyxa E681]
Length = 691
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 39/116 (33%), Gaps = 9/116 (7%)
Query: 6 GEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + ++ V+ GD N S + + L+ EKE
Sbjct: 525 ATIVNGFVKSVLQVNPKANMVVLGDLNDFQFSETL--ALLRGQELTNLIDHLD-EKERYS 581
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + N +LD+ ++ S + + +D ++S H PL + D
Sbjct: 582 YIHEGNSQTLDHMLVSPSLSKT----SVLDIVHMNADFSAADGRVSDHDPLVAQID 633
>gi|265990736|ref|ZP_06103293.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 1
str. Rev.1]
gi|263001520|gb|EEZ14095.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 1
str. Rev.1]
Length = 358
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 247 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 299
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 300 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 348
>gi|260168382|ref|ZP_05755193.1| AP endonuclease family 1 domain protein [Brucella sp. F5/99]
gi|261757842|ref|ZP_06001551.1| endonuclease/exonuclease/phosphatase family [Brucella sp. F5/99]
gi|261737826|gb|EEY25822.1| endonuclease/exonuclease/phosphatase family [Brucella sp. F5/99]
Length = 322
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 211 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 263
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 264 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 312
>gi|91206583|sp|Q2QDE6|DNSL1_CRIGR RecName: Full=Deoxyribonuclease-1-like 1; AltName: Full=DNase X;
AltName: Full=Deoxyribonuclease I-like 1; Short=DNase
I-like 1; Flags: Precursor
gi|73921498|gb|AAZ94279.1| DNase X [Cricetulus griseus]
Length = 304
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 29/104 (27%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ ++ GDFN S+ + + + E T N +
Sbjct: 176 QRWQNEDVILLGDFNADCASLTKKRLNSLLLRTEAGFHWVISDGEDTTVRASTNCTYDRI 235
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + L + + +S H P+ +E
Sbjct: 236 VMHGQGCQTLLRAAAPFNFPRSFQLTEEEALSISDHYPVEVELS 279
>gi|84387306|ref|ZP_00990326.1| putative phospholipase C precursor [Vibrio splendidus 12B01]
gi|84377755|gb|EAP94618.1| putative phospholipase C precursor [Vibrio splendidus 12B01]
Length = 444
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 11/125 (8%)
Query: 3 SQQGEWLKKWADQ-KIKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + +++ A +I T + +GDFN + GD + + D
Sbjct: 317 QRQFKQMRQLAQSLEIPTSETVIYSGDFNVNKLKFPGDYQQMFANLQADEPEYSGYTAST 376
Query: 61 STCNVIKR---------NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ N LDY V+ + +N+ V S + LS H
Sbjct: 377 FDPRINNFAGEPMSGGENVEYLDYVVVSSEYAQKTHNNNRVDVPRSTSSELWKHYNLSDH 436
Query: 112 CPLTI 116
P++
Sbjct: 437 FPVSA 441
>gi|226942361|ref|YP_002797434.1| endonuclease/exonuclease/phosphatase family protein [Azotobacter
vinelandii DJ]
gi|226717288|gb|ACO76459.1| endonuclease/exonuclease/phosphatase family protein [Azotobacter
vinelandii DJ]
Length = 286
Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 32/112 (28%), Gaps = 22/112 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + V+ GD N + + L + PQ + + + +
Sbjct: 185 AYIRELVGDYRHLVLMGDMNTHARELLEHSPL------RDLGLLAPQIEATFPSWRPQR- 237
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L+ S ++ +S H P+ +E +
Sbjct: 238 ----------CIDHILLSPSLTLERVQVLPQP-----ISDHLPVAVEIRLPE 274
>gi|255011457|ref|ZP_05283583.1| hypothetical protein Bfra3_20100 [Bacteroides fragilis 3_1_12]
gi|313149275|ref|ZP_07811468.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313138042|gb|EFR55402.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 365
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 27/121 (22%), Gaps = 19/121 (15%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ S Q + + + ++ GDFN S Q +D E
Sbjct: 263 IRSAQARAIAQEIAR--SPYPSVIVCGDFNDSPISYA-HRVISQDLDD------AFTESG 313
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N LI + + S H P+
Sbjct: 314 RGLGISYNQNKFYF------RIDNILISKNLKASGCTVDNSIKD----SDHYPIWCYITL 363
Query: 121 E 121
Sbjct: 364 P 364
>gi|237815081|ref|ZP_04594079.1| AP endonuclease domain-containing protein [Brucella abortus str.
2308 A]
gi|260754390|ref|ZP_05866738.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 6 str.
870]
gi|260883415|ref|ZP_05895029.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 9 str.
C68]
gi|297247999|ref|ZP_06931717.1| AP endonuclease domain-containing protein [Brucella abortus bv. 5
str. B3196]
gi|237789918|gb|EEP64128.1| AP endonuclease domain-containing protein [Brucella abortus str.
2308 A]
gi|260674498|gb|EEX61319.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 6 str.
870]
gi|260872943|gb|EEX80012.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 9 str.
C68]
gi|297175168|gb|EFH34515.1| AP endonuclease domain-containing protein [Brucella abortus bv. 5
str. B3196]
Length = 357
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 246 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 298
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 299 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 347
>gi|255945257|ref|XP_002563396.1| Pc20g09000 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211588131|emb|CAP86229.1| Pc20g09000 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1102
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 38/123 (30%), Gaps = 17/123 (13%)
Query: 14 DQKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIR---------FPQE 58
++ I + GDFN +++ + +Q++ + L F E
Sbjct: 773 NRSIADHDAVIWLGDFNYRIGLDNPSVRELILQRDYQRLYDNDQLNLQMVAGRVFQFYSE 832
Query: 59 KESTCNVIKRNKSSLDYFVIDR--DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ D + + + + Q++ T K+S H P+
Sbjct: 833 GPIEFPPTYKYDVGGDNYDTSEKARIPAWCDRILWRGNNLRQTNYQTADLKVSDHRPVWA 892
Query: 117 EYD 119
+D
Sbjct: 893 TFD 895
>gi|55296320|dbj|BAD68138.1| putative DNA-(apurinic or apyrimidinic site) lyase (ARP) [Oryza
sativa Japonica Group]
gi|55297697|dbj|BAD68287.1| putative DNA-(apurinic or apyrimidinic site) lyase (ARP) [Oryza
sativa Japonica Group]
Length = 307
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 25/121 (20%), Gaps = 21/121 (17%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL-----------------LIRFPQEK 59
++ P ++AGD N SI + + Q
Sbjct: 191 LEKSKPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIEERESFETNFSSKGLVDTFRKQHP 250
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + FL S + S H P+ +
Sbjct: 251 NAVGYTFWGENQRITNKGW--RLDYFLASESITDK--VHDSYILPDVSFSDHSPIGLVLK 306
Query: 120 F 120
Sbjct: 307 L 307
>gi|123440323|ref|XP_001310923.1| Endonuclease/Exonuclease/phosphatase family protein [Trichomonas
vaginalis G3]
gi|121892713|gb|EAX97993.1| Endonuclease/Exonuclease/phosphatase family protein [Trichomonas
vaginalis G3]
Length = 339
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 15/136 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM------DPDGLLIR 54
+ +Q + L + K+ G P V+ GD N + + D LL
Sbjct: 204 VRQKQFDQLSAFMATKVTDGYPAVLVGDLNVNSRLGDEYKSLLDHLKIPEYSCVDTLLTT 263
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR--------- 105
+ + + + + S
Sbjct: 264 HGEHPVTCGGDDDKVLPEPGDVGTHQSLDYIYLFEKHDKPQLKVSYKPEVNKMLVNGQKF 323
Query: 106 SKLSTHCPLTIEYDFE 121
+LS H + E++F
Sbjct: 324 FQLSDHFAVECEFEFN 339
>gi|315037288|ref|YP_004030856.1| hypothetical protein LA2_00290 [Lactobacillus amylovorus GRL 1112]
gi|312275421|gb|ADQ58061.1| hypothetical protein LA2_00290 [Lactobacillus amylovorus GRL 1112]
Length = 367
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 16/133 (12%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRK-------INSIGDTDDFW-----QKMDP 48
M Q + L K + + K G ++ GDFN + W QKM P
Sbjct: 239 MRKAQMKILSKVIEAEYKAGNYVIVGGDFNHALGRDMLTHFDHQEKIPSWVSVLDQKMLP 298
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ +E V + F+I + + D +
Sbjct: 299 KDFIMVKATNRERVATVRSTDMKYRPKVNYQTVGDGFIISKNIKAKATDINTDYRYA--- 355
Query: 109 STHCPLTIEYDFE 121
H P+ + + +
Sbjct: 356 -DHNPVRLGFSLK 367
>gi|306845228|ref|ZP_07477804.1| AP endonuclease domain-containing protein [Brucella sp. BO1]
gi|306274387|gb|EFM56194.1| AP endonuclease domain-containing protein [Brucella sp. BO1]
Length = 322
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 211 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 263
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 264 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 312
>gi|294899286|ref|XP_002776572.1| retrovirus polyprotein, putative [Perkinsus marinus ATCC 50983]
gi|239883614|gb|EER08388.1| retrovirus polyprotein, putative [Perkinsus marinus ATCC 50983]
Length = 2563
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 34/143 (23%), Gaps = 35/143 (24%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------- 41
+ +WL+ A +K P +IAGD N + + D
Sbjct: 716 FRRYMKWLRSRAGEK-----PLIIAGDLNACGSDLDIGDTRREAPHSPSIQPCEVEAFER 770
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+++ E + + R L+ +
Sbjct: 771 LQREVSLCDTFRIVHPE-VAGVYSFY-CNAYEKKLNFGRRIDYILVSSE--QSDCVVDST 826
Query: 102 DTR-----RSKLSTHCPLTIEYD 119
+ HCP+ E
Sbjct: 827 VFYAEFGLGYRP-DHCPILAELR 848
>gi|223040783|ref|ZP_03611050.1| putative endonuclease/exonuclease/phosphatase [Campylobacter rectus
RM3267]
gi|222877973|gb|EEF13087.1| putative endonuclease/exonuclease/phosphatase [Campylobacter rectus
RM3267]
Length = 445
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 11/111 (9%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ V+ GDFN D + L + P+ + R +
Sbjct: 176 LKSALTDTEKVVVLGDFNAPYGDKELLGDLAASKNLANLWVFLPKHE--------RYSHT 227
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + + ++ + S+ + +++S H L +F+K
Sbjct: 228 SNNALDHVLLSKDALSQNYVLNSFKV---ELDGAQISDHFALVFRLNFDKN 275
>gi|213156292|ref|YP_002318712.1| endonuclease/exonuclease/phosphatase [Acinetobacter baumannii
AB0057]
gi|213055452|gb|ACJ40354.1| endonuclease/exonuclease/phosphatase [Acinetobacter baumannii
AB0057]
Length = 783
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 38/145 (26%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +W + ++ GD N + Q ++
Sbjct: 606 KAVDQIVQWLAKNPTQVPKQNALLVGDMNSYAKEAPILAFEKANYKVLLNDAKVGQGAQA 665
Query: 62 TCNVIK--------RNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSD----- 100
V +LD+ + D D + + ++ Y++
Sbjct: 666 YSYVFGVASDANGNGGVGNLDHAIADADLYPKVVRTFAWHINADEPMVLDYNEEYKTDEQ 725
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D
Sbjct: 726 KALFYGEDAYRSSDHDPVIVDLDLN 750
>gi|157150318|ref|YP_001450810.1| exodeoxyribonuclease III [Streptococcus gordonii str. Challis
substr. CH1]
gi|157075112|gb|ABV09795.1| exodeoxyribonuclease III [Streptococcus gordonii str. Challis
substr. CH1]
Length = 275
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 33/125 (26%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+ P + GD+N I + + P
Sbjct: 154 ATLDEQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERTGFTNLLAKGFTDTFRYLH 213
Query: 57 QEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + +R+K+S +L N + +D+ + H P+
Sbjct: 214 GDIPNQYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--DHTPIV 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 MEIEL 275
>gi|330986335|gb|EGH84438.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. lachrymans str. M301315]
Length = 233
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ L + +++ G P ++AGDFN + L E+
Sbjct: 132 RQQLNLLAELM-ERLPEGEPVIVAGDFND-------WRQRADALLEGTGLHEVFVERFGA 183
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + N+ S S S LS H PL +E
Sbjct: 184 P------AKSFPARWPLLRLDRIYVRNATSHRPKVLSSRPW--SHLSDHAPLAVELTL 233
>gi|313158155|gb|EFR57560.1| endonuclease/exonuclease/phosphatase family protein [Alistipes sp.
HGB5]
Length = 302
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 12/117 (10%), Positives = 27/117 (23%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + + Q P + GD N + R
Sbjct: 186 ESVKLIVEQMKQIAGRYAPIFVTGDMNASYAAGDGRRTCLDGFFEFMWSARETAPDGEAD 245
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+V N + + + ++ +S H P+ +F
Sbjct: 246 DVYSYNNFGEGTPRFTWNIDHIFYRKVTPVRFRTINNDGYGVPYISDHFPILFTSEF 302
>gi|262037433|ref|ZP_06010897.1| lpxtg cell wall surface protein [Leptotrichia goodfellowii F0264]
gi|261748595|gb|EEY35970.1| lpxtg cell wall surface protein [Leptotrichia goodfellowii F0264]
Length = 598
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 9/116 (7%)
Query: 5 QGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QG+ + + + ++ GD N S + ++ + +
Sbjct: 487 QGKQINNFVKNILNNDPKATVIVLGDMNDFEFSQTIKNINGDELIDTISELPVNE---RY 543
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
V + +LD +I++ K + + I S D + S H P+ I++
Sbjct: 544 SYVYQGASQTLDNIMINKKYKGQVNVDVIRINSEFTIDQGS----FSDHDPVFIQF 595
>gi|242215539|ref|XP_002473584.1| predicted protein [Postia placenta Mad-698-R]
gi|220727304|gb|EED81227.1| predicted protein [Postia placenta Mad-698-R]
Length = 475
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 25/132 (18%)
Query: 9 LKKWADQKIK-TGIPFVIAGDFNRKIN-----------------SIGDTDDFWQKMDPDG 50
L++ + I+ ++ GD N + F +DP+G
Sbjct: 158 LQERIRKLIEKEHREVIVVGDINIAATPLDHAEGNLPSSIATFWDHPAREWFRNWLDPNG 217
Query: 51 LL----IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ F E++ K L+ +
Sbjct: 218 PMVDVIRMFWPERKGL-YTCWNMKLQARETNYGARIDYVLVTKGLLPWIKHGDIQAS--L 274
Query: 107 KLSTHCPLTIEY 118
K S HCP+ I+
Sbjct: 275 KGSDHCPIYIDL 286
>gi|62085796|gb|AAX63289.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 34/156 (21%), Gaps = 43/156 (27%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFW 43
+Q E L I G V+AGD N + + ++
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 44 QKMDP--------------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ ++ + F + K + +
Sbjct: 203 RILNQLLFGGTVFGDRDDDRERAVLWDICRCFHPTRLGM-YTCWDTKRNTRPANVGSRID 261
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 262 YILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|321262100|ref|XP_003195769.1| DNA-(apurinic or apyrimidinic site) lyase [Cryptococcus gattii
WM276]
gi|317462243|gb|ADV23982.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Cryptococcus
gattii WM276]
Length = 651
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 27/131 (20%), Gaps = 22/131 (16%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIG-------------DTDDFWQKMDPDGLLIR 54
L++ G +I GD N + + + +D
Sbjct: 160 ALQERVHLLQAAGREVIIVGDINIVRQPMDSGEGPVRSSAEQHYSHPARRILDNWCAPKG 219
Query: 55 FPQEKESTCNVI-------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ K L + L +
Sbjct: 220 PMVDVIRESWPQRDDMFTCWNQKLDARSANYGSRIDYVLCTHGLRPWIKGGDILS--KVY 277
Query: 108 LSTHCPLTIEY 118
S HCP+ ++
Sbjct: 278 GSDHCPVYVDL 288
>gi|256044324|ref|ZP_05447228.1| Endonuclease/exonuclease/phosphatase family protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|260563678|ref|ZP_05834164.1| endonuclease/exonuclease/phosphatase family protein [Brucella
melitensis bv. 1 str. 16M]
gi|260153694|gb|EEW88786.1| endonuclease/exonuclease/phosphatase family protein [Brucella
melitensis bv. 1 str. 16M]
Length = 322
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 211 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 263
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 264 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 312
>gi|123487248|ref|XP_001324898.1| exodeoxyribonuclease III family protein [Trichomonas vaginalis G3]
gi|121907789|gb|EAY12675.1| exodeoxyribonuclease III family protein [Trichomonas vaginalis G3]
Length = 289
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 25/117 (21%), Gaps = 16/117 (13%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDGLLIRFPQEK 59
+++ P + GD N I F ++ + I
Sbjct: 141 ELEKKKPVIWTGDLNVAHKPIDIWQAEGHEKIAGYTDEERKWFDDFLNEGHIDIYRELHP 200
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
ES + F+ + S H P+ +
Sbjct: 201 ESHEFTFFNYRGQAKSKNQGWRIDYFITGKGNIEKLGISDCVIEGTIDGSDHQPVIL 257
>gi|297180781|gb|ADI16988.1| hypothetical protein [uncultured Sphingobacteriales bacterium
HF0010_19H17]
Length = 357
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 24/127 (18%), Positives = 50/127 (39%), Gaps = 8/127 (6%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPDGLLIRFPQ 57
+++ + + +A+++ G VI GD+N+ N+I + + D
Sbjct: 227 NKEMQHILNFAEREFYKGNYVVIGGDWNQSPPNYSNNTIPELYKDSSFTNDDVPQDWKWV 286
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+T K N + ++LI + S+ S D+ K S H P+ ++
Sbjct: 287 ADVNTPTNRKLNMPYIKGLSYTSVIDHYLISPNVSVDSIAVVDMQ---FKYSDHQPVYLK 343
Query: 118 YDFEKGN 124
+KG+
Sbjct: 344 VTLDKGS 350
>gi|260761435|ref|ZP_05873778.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 2 str.
86/8/59]
gi|260671867|gb|EEX58688.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 2 str.
86/8/59]
Length = 366
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 255 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 307
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 308 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 356
>gi|74007458|ref|XP_548620.2| PREDICTED: similar to apurinic/apyrimidinic endonuclease 2 [Canis
familiaris]
Length = 487
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 29/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLL 52
L+ A+ + G +I GD N I D + G
Sbjct: 148 RLLQIRAEALLAAGSHVIILGDLNTAHCPIDHWDAVNLECFEEDPGRKWMDGLLSNLGCQ 207
Query: 53 IRFPQEKESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
S + L D + I ++ Q
Sbjct: 208 AGSHVRPFIDSYRCFQPKQEGAFTCWSAVSGARHLNYGSRLDYVLGDRTLVIDTF-QDSF 266
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 267 LLPEVMGSDHCPVGAVLS 284
>gi|13472690|ref|NP_104257.1| hypothetical protein mll3063 [Mesorhizobium loti MAFF303099]
gi|14023437|dbj|BAB50043.1| mll3063 [Mesorhizobium loti MAFF303099]
Length = 302
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 9/119 (7%)
Query: 10 KKWADQKIKTGIPF--VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST----- 62
+ W +I+ P + GDFN + S + G +
Sbjct: 178 RNWTSGEIEPENPLAAIWMGDFNMEPGSAEYRRIVGRTPYHRGAAYLDGFVDAAAVAIEL 237
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ +D + R + + F+ S H P+ ++ D E
Sbjct: 238 AGDFHTHEKIIDGRLAKRRLDHCFVGGVFARRVRSVRSDI--GEMASDHFPVRVDIDLE 294
>gi|320163021|gb|EFW39920.1| apurinic/apyrimidinic endonuclease 2 [Capsaspora owczarzaki ATCC
30864]
Length = 734
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 29/132 (21%), Gaps = 23/132 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES----- 61
L+ + G ++AGDFN I D D + +
Sbjct: 354 RVLQLRVNALRTAGRCVIVAGDFNLTHRRIDHCDPENYTTDDGSVDFEAHPSRRWMESFL 413
Query: 62 ----------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ R + + D + R
Sbjct: 414 AEGRVDCFRHFHPLLSSRYTCWRVDTRARETNYGTRIDYIVTDQALLPDISGC--YHLTR 471
Query: 106 SKLSTHCPLTIE 117
S HCP+ I
Sbjct: 472 FPGSDHCPVVIT 483
>gi|260757609|ref|ZP_05869957.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 4 str.
292]
gi|261213636|ref|ZP_05927917.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 3 str.
Tulya]
gi|260667927|gb|EEX54867.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 4 str.
292]
gi|260915243|gb|EEX82104.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 3 str.
Tulya]
Length = 357
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 246 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 298
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 299 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 347
>gi|225852147|ref|YP_002732380.1| hypothetical protein BMEA_A0660 [Brucella melitensis ATCC 23457]
gi|225640512|gb|ACO00426.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
Length = 358
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 247 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 299
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 300 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 348
>gi|153812188|ref|ZP_01964856.1| hypothetical protein RUMOBE_02585 [Ruminococcus obeum ATCC 29174]
gi|149831843|gb|EDM86929.1| hypothetical protein RUMOBE_02585 [Ruminococcus obeum ATCC 29174]
Length = 281
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 16/130 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFN-------RKINSIGDTDDFWQKMDPDGLLIR--- 54
Q L + ++ + G + GDFN + + +
Sbjct: 155 QIRMLAEDMQKEYEAGNYVLCGGDFNHDLKAAEDDSADKESWAYPFPREELQEHFAFCID 214
Query: 55 FPQEKESTCNVIKRNKSSLDYFV---IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+E + ++Y F+I ++ VSY+ + S H
Sbjct: 215 QLTAQEKNDLWDSARNADMEYVPGVTYTVTLDGFIISDNIECVSYEDINT---GYSYSDH 271
Query: 112 CPLTIEYDFE 121
P+ +++ +
Sbjct: 272 DPVYLKFRLK 281
>gi|328881588|emb|CCA54827.1| putative large secreted protein [Streptomyces venezuelae ATCC
10712]
Length = 620
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 12/117 (10%)
Query: 5 QGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + Q + + ++ GD N S + E+
Sbjct: 513 QAQAVNGFVKQLLAVEKQADVLVVGDINDFEFSGTTKALTDGGALYPAVKSLPRSER--Y 570
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
V + N LD + +F D+ + D S H P + +
Sbjct: 571 SYVFQGNSQVLDQILTSPGVHHFEYDSVHINAEFADQD--------SDHDPQVLRFR 619
>gi|62289584|ref|YP_221377.1| AP endonuclease domain-containing protein [Brucella abortus bv. 1
str. 9-941]
gi|82699514|ref|YP_414088.1| endonuclease/exonuclease/phosphatase family protein [Brucella
melitensis biovar Abortus 2308]
gi|189023843|ref|YP_001934611.1| Endonuclease/exonuclease/phosphatase family [Brucella abortus S19]
gi|254688905|ref|ZP_05152159.1| Endonuclease/exonuclease/phosphatase family protein [Brucella
abortus bv. 6 str. 870]
gi|254693386|ref|ZP_05155214.1| Endonuclease/exonuclease/phosphatase family protein [Brucella
abortus bv. 3 str. Tulya]
gi|254697037|ref|ZP_05158865.1| Endonuclease/exonuclease/phosphatase family protein [Brucella
abortus bv. 2 str. 86/8/59]
gi|254729936|ref|ZP_05188514.1| Endonuclease/exonuclease/phosphatase family protein [Brucella
abortus bv. 4 str. 292]
gi|256113160|ref|ZP_05454037.1| Endonuclease/exonuclease/phosphatase family protein [Brucella
melitensis bv. 3 str. Ether]
gi|256257153|ref|ZP_05462689.1| Endonuclease/exonuclease/phosphatase family protein [Brucella
abortus bv. 9 str. C68]
gi|260545655|ref|ZP_05821396.1| endonuclease/exonuclease/phosphatase family protein [Brucella
abortus NCTC 8038]
gi|62195716|gb|AAX74016.1| AP endonuclease family 1 domain protein [Brucella abortus bv. 1
str. 9-941]
gi|82615615|emb|CAJ10602.1| Endonuclease/exonuclease/phosphatase family [Brucella melitensis
biovar Abortus 2308]
gi|189019415|gb|ACD72137.1| Endonuclease/exonuclease/phosphatase family [Brucella abortus S19]
gi|260097062|gb|EEW80937.1| endonuclease/exonuclease/phosphatase family protein [Brucella
abortus NCTC 8038]
Length = 322
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 211 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 263
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 264 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 312
>gi|261218999|ref|ZP_05933280.1| endonuclease/exonuclease/phosphatase [Brucella ceti M13/05/1]
gi|261321501|ref|ZP_05960698.1| endonuclease/exonuclease/phosphatase [Brucella ceti M644/93/1]
gi|260924088|gb|EEX90656.1| endonuclease/exonuclease/phosphatase [Brucella ceti M13/05/1]
gi|261294191|gb|EEX97687.1| endonuclease/exonuclease/phosphatase [Brucella ceti M644/93/1]
Length = 357
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 246 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAITPAPPTGPT 298
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 299 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 347
>gi|212691340|ref|ZP_03299468.1| hypothetical protein BACDOR_00832 [Bacteroides dorei DSM 17855]
gi|265751906|ref|ZP_06087699.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|212666093|gb|EEB26665.1| hypothetical protein BACDOR_00832 [Bacteroides dorei DSM 17855]
gi|263236698|gb|EEZ22168.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 353
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 28/113 (24%), Gaps = 21/113 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E + + T P ++ GDFN + GL F E
Sbjct: 259 QAEQISSLIN---ATEYPLIVCGDFNDPPGTFTYETLK------SGLKDGFQTAGEGYGA 309
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + Y D +S H P+ +E
Sbjct: 310 TYRGFH-------HLLRIDYLFHSTLLEGIKYKVIPYD-----MSDHNPVYLE 350
>gi|34761710|gb|AAQ82026.1| ORF2 [Tetrahymena thermophila]
Length = 1147
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 5/123 (4%)
Query: 3 SQQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q L++ Q ++ +I GDFN I++ + +K L F + K
Sbjct: 217 EEQA-LLEEIISQVLQDNRLNHILIYGDFNLDISTSNSSHADVRKAGQIRRLKDFLKSKN 275
Query: 61 ST--CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ +I F+ + + + ++ ++ S H P+ I+
Sbjct: 276 LYIHSTNRHTREAFKQNKIIKTQVDFFISSFAPNCILKIETITQDESNRGSDHYPIRIQI 335
Query: 119 DFE 121
D +
Sbjct: 336 DLQ 338
>gi|322386046|ref|ZP_08059685.1| exodeoxyribonuclease [Streptococcus cristatus ATCC 51100]
gi|321269890|gb|EFX52811.1| exodeoxyribonuclease [Streptococcus cristatus ATCC 51100]
Length = 275
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEK 59
+ P + GD+N I + + + G F
Sbjct: 154 ASLDEQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLH 213
Query: 60 ES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+R+K+S +L N + +D+ + H P+
Sbjct: 214 GDIPNQYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--DHTPIV 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 MEIEL 275
>gi|257484686|ref|ZP_05638727.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tabaci ATCC 11528]
gi|320323872|gb|EFW79956.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. glycinea str. B076]
gi|320328009|gb|EFW84014.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. glycinea str. race 4]
Length = 237
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ L + +++ G P ++AGDFN + L E+
Sbjct: 136 RQQLNLLAELM-ERLPEGEPVIVAGDFND-------WRQRADALLEGTGLHEVFVERFGA 187
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + N+ S S S LS H PL +E
Sbjct: 188 P------AKSFPARWPLLRLDRIYVRNATSHRPKVLSSRPW--SHLSDHAPLAVELTL 237
>gi|333027971|ref|ZP_08456035.1| putative large secreted protein [Streptomyces sp. Tu6071]
gi|332747823|gb|EGJ78264.1| putative large secreted protein [Streptomyces sp. Tu6071]
Length = 612
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 14/118 (11%)
Query: 5 QGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + Q + V+ GD N S + G+ E+
Sbjct: 505 QAASVNAFVRQLTALDKKARVVVLGDLNDFEFSDTTKTLTKGNVLRSGIAQLPSDER--Y 562
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYD 119
V Y + L+ +YD + S H P + +
Sbjct: 563 TYV---------YQGNSQVLDQILVSKGVKSFTYDSVHINAEFAQQNSDHDPQLLRFR 611
>gi|281424056|ref|ZP_06254969.1| endonuclease/Exonuclease/phosphatase family protein [Prevotella
oris F0302]
gi|281401839|gb|EFB32670.1| endonuclease/Exonuclease/phosphatase family protein [Prevotella
oris F0302]
Length = 313
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 15/117 (12%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
T +IAGDFN + + + + + SLD+ +
Sbjct: 198 STSAHIIIAGDFNDYTQDVSIQYLISCGLADVSASAKGTHGAK-GTYKYRGEWGSLDHVL 256
Query: 78 IDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKL-------------STHCPLTIEYDF 120
+ + + D + S H PL +++DF
Sbjct: 257 CSEALVPLFRSCTIADFPFLLTDDEVYGGLQPLRNFHGAKYLNGFSDHLPLVVKFDF 313
>gi|254524231|ref|ZP_05136286.1| endonuclease/exonuclease/phosphatase family protein
[Stenotrophomonas sp. SKA14]
gi|219721822|gb|EED40347.1| endonuclease/exonuclease/phosphatase family protein
[Stenotrophomonas sp. SKA14]
Length = 295
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 38/123 (30%), Gaps = 5/123 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ Q E L ++ G P VIAGDFN +++ ++ D G +
Sbjct: 177 IRRSQVEDLLRYIST-TSAGAPVVIAGDFNALVDAGDLSELRSHYGDSYGSVHVNTDLAG 235
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ ++ I + + + +DQ D S H + F
Sbjct: 236 VSTLNRHYYQAPSRIDHIFFQQDEMVAREA--KLLFDQPDDS--GRWASDHYGVWTRLQF 291
Query: 121 EKG 123
Sbjct: 292 APA 294
>gi|171912039|ref|ZP_02927509.1| hypothetical protein VspiD_12705 [Verrucomicrobium spinosum DSM
4136]
Length = 339
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 30/124 (24%), Gaps = 10/124 (8%)
Query: 1 MLSQQGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
M + L++ + + + + GDFN + + ++ ++
Sbjct: 198 MRRNEAHLLRRHIESILTTEPATRLLAYGDFNESKHEAALVEIEGVPGTDVSMMDVRLRD 257
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS---DLDTRRSKLSTHCPLT 115
D ++ + S H PL
Sbjct: 258 SRGETWTH-----FWDAADHYSRLDYCFVNRALQSDIKKPESFVYDPPNFYDASDHRPLV 312
Query: 116 IEYD 119
I+ D
Sbjct: 313 IKID 316
>gi|125585545|gb|EAZ26209.1| hypothetical protein OsJ_10076 [Oryza sativa Japonica Group]
Length = 436
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 9/120 (7%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
QKI ++ GD N +I+ +++ +G E + + +
Sbjct: 273 LPQKILDHDRVILLGDLNYRISLPEAKTSCEAQVESEGGAFHGWNEGAIAFSPTYKYYPN 332
Query: 73 LD---------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
D R + + Q D S+LS H P+ ++ E G
Sbjct: 333 SDTYYGCASHGRKGEKRRAPAWCDRILWRGAGLKQKRYDRCESRLSDHRPVRALFEVEVG 392
>gi|325955766|ref|YP_004286376.1| hypothetical protein LAC30SC_00225 [Lactobacillus acidophilus 30SC]
gi|325332331|gb|ADZ06239.1| hypothetical protein LAC30SC_00225 [Lactobacillus acidophilus 30SC]
Length = 367
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 16/133 (12%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRK-------INSIGDTDDFW-----QKMDP 48
M Q + L K + + K G ++ GDFN + W QKM P
Sbjct: 239 MRKAQMKILSKVIEAEYKAGNYVIVGGDFNHALGRDMLTHFDHQEKIPSWVSVLDQKMLP 298
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ +E V + F+I + + D +
Sbjct: 299 KDFIMVKATNRERVATVRSTDMKYRPKVNYQTVGDGFIISKNIKAKATDINTDYRYA--- 355
Query: 109 STHCPLTIEYDFE 121
H P+ + + +
Sbjct: 356 -DHNPVRLGFSLK 367
>gi|293339926|ref|XP_002724704.1| PREDICTED: rCG35247-like isoform 3 [Rattus norvegicus]
gi|293351345|ref|XP_002727798.1| PREDICTED: rCG35247-like isoform 3 [Rattus norvegicus]
Length = 363
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 11/99 (11%), Positives = 24/99 (24%), Gaps = 1/99 (1%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK-SSLDYFVID 79
+ GDFN + D ++ + + T +
Sbjct: 262 DDMLFLGDFNADCKYVKAHDWPSIRLRSSQVFKWLIPDSADTTVGNSDCAYDRIVVSGAH 321
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S + T+ +S H P+ + +
Sbjct: 322 MRKSVKPQSASVHNFQEEFDLDQTQALAISDHFPVEVTF 360
>gi|150390789|ref|YP_001320838.1| endonuclease/exonuclease/phosphatase [Alkaliphilus metalliredigens
QYMF]
gi|149950651|gb|ABR49179.1| Endonuclease/exonuclease/phosphatase [Alkaliphilus metalliredigens
QYMF]
Length = 379
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 19/104 (18%)
Query: 13 ADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+Q+I P ++ GDFN + +S + + G + +
Sbjct: 288 IEQQIDMAQNPVILVGDFNARPHSQEIQK-LSRGLLDVGK-RMGYNDTPTF--------- 336
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
D V+ +D I++Y +S+ S H P+T
Sbjct: 337 --DLPVLSGRIDYIFVDQQMEILTYRVI-----KSRASDHYPVT 373
>gi|327462087|gb|EGF08416.1| exodeoxyribonuclease [Streptococcus sanguinis SK1057]
Length = 322
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 25/139 (17%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQK 45
+Q W K+A+ + P + GD+N I + +
Sbjct: 188 DRQV-WDAKYAEYLATLDGQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTN 246
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N + +
Sbjct: 247 LLAKGFTDTFRHLHGDIPDQYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMI 305
Query: 102 DTRRSKLSTHCPLTIEYDF 120
D+ + H P+ +E +
Sbjct: 306 DSGARQ--DHTPIVMEIEL 322
>gi|301067802|ref|YP_003789825.1| metal-dependent hydrolase [Lactobacillus casei str. Zhang]
gi|300440209|gb|ADK19975.1| Metal-dependent hydrolase [Lactobacillus casei str. Zhang]
Length = 355
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 44/133 (33%), Gaps = 18/133 (13%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ ++ L K+ +Q + G ++AGD+N ++ + +D + + +
Sbjct: 226 QQAQFTKLFKYIEQAYQQGNYVMVAGDYNHRLLKNTAEIFHTKDLDETWTHLFPKSKLPA 285
Query: 62 TCN-------------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ V ++ +++ + S +
Sbjct: 286 GFHIPTMGLAKAAVPSVRALDQPYQPGKSFVTLIDGYILSPNIKAESVHVVST---GFQY 342
Query: 109 STHCPLTIEYDFE 121
S H P+ +++ +
Sbjct: 343 SDHNPVVLKFQLQ 355
>gi|256264341|ref|ZP_05466873.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 2
str. 63/9]
gi|263094615|gb|EEZ18413.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 2
str. 63/9]
gi|326408648|gb|ADZ65713.1| Endonuclease/exonuclease/phosphatase family [Brucella melitensis
M28]
gi|326538369|gb|ADZ86584.1| conserved hypothetical protein [Brucella melitensis M5-90]
Length = 322
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 211 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 263
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 264 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 312
>gi|227532810|ref|ZP_03962859.1| endonuclease/exonuclease/phosphatase [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239630649|ref|ZP_04673680.1| metal-dependent hydrolase [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|227189551|gb|EEI69618.1| endonuclease/exonuclease/phosphatase [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239526932|gb|EEQ65933.1| metal-dependent hydrolase [Lactobacillus paracasei subsp. paracasei
8700:2]
Length = 355
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 44/133 (33%), Gaps = 18/133 (13%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ ++ L K+ +Q + G ++AGD+N ++ + +D + + +
Sbjct: 226 QQAQFTKLFKYIEQAYQQGNYVMVAGDYNHRLLKNTAEIFHTKDLDETWTHLFPKSKLPA 285
Query: 62 TCN-------------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ V ++ +++ + S +
Sbjct: 286 GFHIPTMGLAKAAVPSVRALDQPYQPGKSFVTLIDGYILSPNIKAESVHVVST---GFQY 342
Query: 109 STHCPLTIEYDFE 121
S H P+ +++ +
Sbjct: 343 SDHNPVVLKFQLQ 355
>gi|191639720|ref|YP_001988886.1| Endonuclease/exonuclease/phosphatase [Lactobacillus casei BL23]
gi|190714022|emb|CAQ68028.1| Endonuclease/exonuclease/phosphatase [Lactobacillus casei BL23]
gi|327383835|gb|AEA55311.1| Endonuclease/exonuclease/phosphatase family protein [Lactobacillus
casei LC2W]
gi|327387014|gb|AEA58488.1| Endonuclease/exonuclease/phosphatase family protein [Lactobacillus
casei BD-II]
Length = 355
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 44/133 (33%), Gaps = 18/133 (13%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ ++ L K+ +Q + G ++AGD+N ++ + +D + + +
Sbjct: 226 QQAQFTKLFKYIEQAYQQGNYVMVAGDYNHRLLKNTAEIFHTKDLDETWTHLFPKSKLPA 285
Query: 62 TCN-------------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ V ++ +++ + S +
Sbjct: 286 GFHIPTMGLAKAAVPSVRALDQPYQPGKSFVTLIDGYILSPNIKAESVHVVST---GFQY 342
Query: 109 STHCPLTIEYDFE 121
S H P+ +++ +
Sbjct: 343 SDHNPVVLKFQLQ 355
>gi|190348984|gb|EDK41547.2| hypothetical protein PGUG_05645 [Meyerozyma guilliermondii ATCC
6260]
Length = 308
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 3/122 (2%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + W Q I P ++GDFN + I + M ++ + T
Sbjct: 189 QESTKLIVGWL-QSIPNDYPQFLSGDFNSIASDIA-YETVADYMADTNVIANIHETGNET 246
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNS-FSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
N S +V Y+ + + S H P+T +
Sbjct: 247 TYTGFEYGDHQSVIDFIWAPSNSNKPKSGVEVVGYEVLSNNYSDFRFSDHRPVTSHFRIS 306
Query: 122 KG 123
Sbjct: 307 SN 308
>gi|70605975|ref|YP_254845.1| exonuclease [Sulfolobus acidocaldarius DSM 639]
gi|68566623|gb|AAY79552.1| exonuclease [Sulfolobus acidocaldarius DSM 639]
Length = 241
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 11/117 (9%), Positives = 28/117 (23%), Gaps = 21/117 (17%)
Query: 16 KIKTGIPFVIAGDFNRKIN--SIGDTD------------DFWQKMDPDGLLIRFPQEKES 61
+++ P ++ GD N + D + + D +
Sbjct: 131 ELRKRKPVILCGDLNVARDKIDSTFWDEKEPGLTSEERGWINKILSTDFVDTYRFINGNK 190
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ ++ + D + + S H P+ +E
Sbjct: 191 IEYSWRSY----LEKWKAMRIDYCIVSSEIKD---RIKDSKIIKIEGSDHYPVYLEI 240
>gi|332885531|gb|EGK05780.1| hypothetical protein HMPREF9456_02582 [Dysgonomonas mossii DSM
22836]
Length = 284
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 10/106 (9%), Positives = 26/106 (24%), Gaps = 3/106 (2%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC-NVIKRNKSSLDY 75
+ G+P ++ GDFN S + + ++S
Sbjct: 181 LANGLPIIMTGDFNATPESDVIKHVTDVNSPEHLIHSKDIAVEKSGTDWTFHGFG--KVP 238
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + +S H + + + +
Sbjct: 239 MERREFIDYVFVSKGIKVAKHSVLPEKLDDIFISDHSVVVAQIEIK 284
>gi|223984603|ref|ZP_03634730.1| hypothetical protein HOLDEFILI_02026 [Holdemania filiformis DSM
12042]
gi|223963450|gb|EEF67835.1| hypothetical protein HOLDEFILI_02026 [Holdemania filiformis DSM
12042]
Length = 363
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 7/128 (5%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +QQ L + Q+ + G + GDFN I D Q++ + E
Sbjct: 236 IRAQQLALLNQVLIQEREQGNYVIAGGDFNHDIAGTLDFFPSQQQVPDWIFAMNTADLAE 295
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT-------RRSKLSTHCP 113
V N + + + SD + S H P
Sbjct: 296 GYHFVRADNADETATCRGADIPFEAGVTYQAIVDGFLVSDNLAATAENIQNDYRYSDHNP 355
Query: 114 LTIEYDFE 121
+ +++
Sbjct: 356 VVLKFRMN 363
>gi|148554721|ref|YP_001262303.1| endonuclease/exonuclease/phosphatase [Sphingomonas wittichii RW1]
gi|148499911|gb|ABQ68165.1| Endonuclease/exonuclease/phosphatase [Sphingomonas wittichii RW1]
Length = 363
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 8/125 (6%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRK--INSIGDTDDFWQKMDPDGLLIRFPQ--- 57
+Q + L ++ +K G P ++AGDFN +K
Sbjct: 225 RRQIDALDQFLAANVKPGTPVIVAGDFNVGQRPARQAYFTAHLRKWGERAPGAVRDALHS 284
Query: 58 --EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-DLDTRRSKLSTHCPL 114
+ C + + + D + ++ + LS H
Sbjct: 285 CLAAPAICGAMPSDAAFSLARARDWELAVPGERAELAVDGLSVPFGHEIDERMLSDHVGY 344
Query: 115 TIEYD 119
YD
Sbjct: 345 VAYYD 349
>gi|91227580|ref|ZP_01261884.1| putative phospholipase C precursor [Vibrio alginolyticus 12G01]
gi|91188473|gb|EAS74766.1| putative phospholipase C precursor [Vibrio alginolyticus 12G01]
Length = 442
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 11/127 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I + V +GDFN GD + E
Sbjct: 314 QRQFKQIRTLAQSLDIPSSETVVYSGDFNVNKRKFPGDYQQMIANLSAIEPHYSGYTEST 373
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ +L ++ + + + S++ + +D + LS H
Sbjct: 374 FDPRINNFAGEALSGGENVEYLDYVMVSSEYGVKSFNDNRVDVPRTTAESLWKHYNLSDH 433
Query: 112 CPLTIEY 118
P++
Sbjct: 434 FPVSATI 440
>gi|320535908|ref|ZP_08035979.1| endonuclease/exonuclease/phosphatase family protein [Treponema
phagedenis F0421]
gi|320147245|gb|EFW38790.1| endonuclease/exonuclease/phosphatase family protein [Treponema
phagedenis F0421]
Length = 255
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 7/114 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + + D K +P V+ GDFN K K+ + ++ +
Sbjct: 145 KALQQIMQDIDSFSKPTLPTVLMGDFNAKPTDEELHVLKEFKIKENDKNLQLNDLTKDIR 204
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ F + +Y + + LS H PL +E
Sbjct: 205 GSFHDFGNCTPEK-----IDYIFATPEFLLQNYSV--WENKAGFLSDHYPLEVE 251
>gi|313205315|ref|YP_004043972.1| endonuclease/exonuclease/phosphatase [Paludibacter propionicigenes
WB4]
gi|312444631|gb|ADQ80987.1| Endonuclease/exonuclease/phosphatase [Paludibacter propionicigenes
WB4]
Length = 369
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 22/99 (22%), Gaps = 17/99 (17%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
++ GDFN +S T +R
Sbjct: 286 VIVCGDFNDVPSSYTYTKVKGSL-----KDAFAETGTGLGWTFNERY--------YHFRI 332
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
F +Y D T + S H P+ +
Sbjct: 333 DYVF----FDPTAYSIIDYKTDKVNYSDHYPVLCQIKIN 367
>gi|254713759|ref|ZP_05175570.1| AP endonuclease domain-containing protein [Brucella ceti M644/93/1]
gi|254717183|ref|ZP_05178994.1| AP endonuclease domain-containing protein [Brucella ceti M13/05/1]
Length = 322
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 211 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAITPAPPTGPT 263
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 264 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 312
>gi|284031647|ref|YP_003381578.1| endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
gi|283810940|gb|ADB32779.1| Endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
Length = 803
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 9/116 (7%)
Query: 4 QQGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q ++ + DQ + G ++ GD N S L R KE
Sbjct: 686 EQARSVRGFVDQILAKDRGANVIVLGDINDFEFSTTTDILVGSGRTTLTSLPRTLPAKER 745
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
V + N LD +I ++ + + + ++S H P +
Sbjct: 746 YSYVFEGNSQILDQILISQNLRLASSYDIVHM-------NAEFPDQISDHDPQVVR 794
>gi|163753635|ref|ZP_02160758.1| Endonuclease/exonuclease/phosphatase [Kordia algicida OT-1]
gi|161325849|gb|EDP97175.1| Endonuclease/exonuclease/phosphatase [Kordia algicida OT-1]
Length = 269
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 6/116 (5%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ + L + + K F++AGDFN + + P + + C
Sbjct: 160 EVKELLAYVQKNYK-NKKFILAGDFNLSQSEEVFKNFKLAGFKPVNID--QKTTLKLICK 216
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+D + D +LS H P+ +++
Sbjct: 217 NASYLNYPIDNIFYTPKINATSTKIIDFVKHCDNLTASR---RLSDHLPVELKFRL 269
>gi|61355637|gb|AAX41160.1| deoxyribonuclease I-like 1 [synthetic construct]
Length = 302
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 31/105 (29%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN S+ ++ + + E T + + + +
Sbjct: 173 QSKDVILLGDFNADCASLTKKRLDKLELRTEPGFHWVIADGEDTTVLASTHCTYDRVVLH 232
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ L + + +S H P+ +E +
Sbjct: 233 GERCRSLLHTAAAFDFPTSFQLTEEEALNISDHYPVEVELKLSQA 277
>gi|187940074|gb|ACD39207.1| hypothetical protein PACL_0419 [Pseudomonas aeruginosa]
Length = 368
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 31/111 (27%), Gaps = 12/111 (10%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
W + P ++ GDFN + + + G +E
Sbjct: 170 AWLESIYPE-TPVMLVGDFNMPPSHPAFSGLSQHATPLITKGATTLSAREGL-------- 220
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-LSTHCPLTIEY 118
+ D + R ++ L + + K +S H P+ +
Sbjct: 221 YANLYDNIWVSRTHRLKLDNAGIMDYPRMIGWSHEKSRKHVSDHAPVFVTL 271
>gi|150006466|ref|YP_001301210.1| hypothetical protein BVU_3985 [Bacteroides vulgatus ATCC 8482]
gi|254881617|ref|ZP_05254327.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|294777013|ref|ZP_06742471.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
vulgatus PC510]
gi|319643001|ref|ZP_07997635.1| hypothetical protein HMPREF9011_03236 [Bacteroides sp. 3_1_40A]
gi|149934890|gb|ABR41588.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
gi|254834410|gb|EET14719.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|294449071|gb|EFG17613.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
vulgatus PC510]
gi|317385366|gb|EFV66311.1| hypothetical protein HMPREF9011_03236 [Bacteroides sp. 3_1_40A]
Length = 353
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 29/113 (25%), Gaps = 21/113 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E + + T P ++ GDFN + +GL F E
Sbjct: 259 QAEQISSLIN---ATEYPLIVCGDFNDPPGTFTYETLK------NGLKDGFQTAGEGYGA 309
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + Y D +S H P+ +E
Sbjct: 310 TYRGFH-------HLLRIDYLFHSTLLEGIKYKVIPYD-----MSDHNPVYLE 350
>gi|71064661|ref|YP_263388.1| hypothetical protein Psyc_0080 [Psychrobacter arcticus 273-4]
gi|71037646|gb|AAZ17954.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 302
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 14/118 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E + + +I P ++AGDFN W+KM D L E+
Sbjct: 199 KQYEAIVNYVRDEIAPDQPLILAGDFND-----------WKKMSCDKLASNLGM-TEAFK 246
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + + + I S LS H PL+ E
Sbjct: 247 HCHGKLLPTFPAKLPVLSLDRIYVR-NLRIKDAWVHTGKP-WSTLSDHLPLSAELALP 302
>gi|318056396|ref|ZP_07975119.1| large secreted protein [Streptomyces sp. SA3_actG]
gi|318075703|ref|ZP_07983035.1| large secreted protein [Streptomyces sp. SA3_actF]
Length = 612
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 14/118 (11%)
Query: 5 QGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + Q + V+ GD N S + G+ E+
Sbjct: 505 QAASVNAFVRQLTALDKKARVVVLGDLNDFEFSDTTKTLTKGNVLRSGITQLPADER--Y 562
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYD 119
V Y + L+ +YD + S H P + +
Sbjct: 563 TYV---------YQGNSQVLDQILVSKGVKSFTYDSVHINAEFAQQNSDHDPQLLRFR 611
>gi|302870082|ref|YP_003838719.1| endonuclease/exonuclease/phosphatase [Micromonospora aurantiaca
ATCC 27029]
gi|302572941|gb|ADL49143.1| Endonuclease/exonuclease/phosphatase [Micromonospora aurantiaca
ATCC 27029]
Length = 1089
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 11/134 (8%), Positives = 25/134 (18%), Gaps = 17/134 (12%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGD----TDDF---------WQKMD 47
+Q + + V GD N + +
Sbjct: 844 REQAAYGAAIVQAVEASDPNARVVYGGDLNVFPRPDDPIATAQNPTPSDQLAPLYEAGLH 903
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN--KNFLIDNSFSIVSYDQSDLDTRR 105
+ + +LD ++ + + Y +
Sbjct: 904 NLWDDLVKDAPASAYSYTFSGQAQTLDNLFVNDPMHDDLVQVRTAHINADYPTDAPELGD 963
Query: 106 SKLSTHCPLTIEYD 119
S H P +
Sbjct: 964 RGASDHDPQVARFR 977
>gi|302518359|ref|ZP_07270701.1| large secreted protein [Streptomyces sp. SPB78]
gi|302427254|gb|EFK99069.1| large secreted protein [Streptomyces sp. SPB78]
Length = 612
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 14/118 (11%)
Query: 5 QGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + Q + V+ GD N S + G+ E+
Sbjct: 505 QAASVNAFVRQLTALDKKARVVVLGDLNDFEFSDTTKTLTKGNVLRSGIAQLPADER--Y 562
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYD 119
V Y + L+ +YD + S H P + +
Sbjct: 563 TYV---------YQGNSQVLDQILVSKGVKSFTYDSVHINAEFAQQNSDHDPQLLRFR 611
>gi|327182593|gb|AEA31040.1| hypothetical protein LAB52_00220 [Lactobacillus amylovorus GRL
1118]
Length = 367
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 16/133 (12%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRK-------INSIGDTDDFW-----QKMDP 48
M Q + L K + + K G ++ GDFN + W QKM P
Sbjct: 239 MRKAQMKILSKVIEAEYKAGNYVIVGGDFNHALGRDMLTHFDHQEKIPSWVSVLDQKMLP 298
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ +E V + F+I + + D +
Sbjct: 299 KDFIMVKATNRERVATVRSTDMKYRPKVNYQTVGDGFIISKNIKAKATDINTDYRYA--- 355
Query: 109 STHCPLTIEYDFE 121
H P+ + + +
Sbjct: 356 -DHNPVRLGFSLK 367
>gi|306829996|ref|ZP_07463183.1| exodeoxyribonuclease III [Streptococcus mitis ATCC 6249]
gi|304428007|gb|EFM31100.1| exodeoxyribonuclease III [Streptococcus mitis ATCC 6249]
Length = 275
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 33/125 (26%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEK 59
+ P + GD+N I + + + G F
Sbjct: 154 ATLDQQKPVLATGDYNVAHKEIDLANPASNHRSPGFTDEERAGFTNLLATGFTDTFRHIH 213
Query: 60 ES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+R+K+S +L N + +++ + H P+
Sbjct: 214 GDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMINSGARQ--DHTPIV 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 MEIEL 275
>gi|254252251|ref|ZP_04945569.1| Metal-dependent hydrolase [Burkholderia dolosa AUO158]
gi|124894860|gb|EAY68740.1| Metal-dependent hydrolase [Burkholderia dolosa AUO158]
Length = 290
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 1/96 (1%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN S F + + + + D
Sbjct: 196 IVCGDFNSAFGSDAYRR-FLEPIADAPRFVDAWVACHAGHTPPPTAGVYDTAQWSDGPLA 254
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + +++S + + S H P+ +E D
Sbjct: 255 CDFVFVTDTLLSRVKRCEIDGDVRASDHQPIVLELD 290
>gi|332286021|ref|YP_004417932.1| hypothetical protein PT7_2768 [Pusillimonas sp. T7-7]
gi|330429974|gb|AEC21308.1| hypothetical protein PT7_2768 [Pusillimonas sp. T7-7]
Length = 284
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 23/148 (15%), Positives = 41/148 (27%), Gaps = 29/148 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKIN--------SIGDTDDFWQKMDPDGLLIR 54
S+Q L + + + G P +IAGDFN N +G + F D
Sbjct: 137 SRQVAALVERIKRMVPEGEPMLIAGDFNDWSNRLAPLFVQQLGLYEVFAIAPHHDPGPRL 196
Query: 55 FPQE----KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT------- 103
+ + V ++ + + ++ LD
Sbjct: 197 LRHSVTRLRNTLRGVSPTPLAATVHELGINGAARMTPPPRTFPAAFPWLRLDRIYQRGFA 256
Query: 104 ----------RRSKLSTHCPLTIEYDFE 121
++S H PL E +
Sbjct: 257 VRKARVLQGVPWKQISDHAPLYAELELP 284
>gi|325964365|ref|YP_004242271.1| metal-dependent hydrolase [Arthrobacter phenanthrenivorans Sphe3]
gi|323470452|gb|ADX74137.1| metal-dependent hydrolase [Arthrobacter phenanthrenivorans Sphe3]
Length = 275
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 25/128 (19%), Gaps = 10/128 (7%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT----DDFWQKMDPDGLLIRFPQE 58
+ L + P V+ GDFN +S
Sbjct: 148 QEAVRALLEHLKTSWDDRTPLVVCGDFNADPDSDEIRMFTGRVAAPVPGLSFYDAWEAGG 207
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNF---LIDNSFSIVSYDQS---DLDTRRSKLSTHC 112
E C N + DR + + S H
Sbjct: 208 TERGCTWANTNPWATQLLWPDRRIDYVFTGMPRRGGAGHPLAAELLGTRPLHGMYPSDHL 267
Query: 113 PLTIEYDF 120
L + +
Sbjct: 268 ALQADLRY 275
>gi|257457228|ref|ZP_05622403.1| endonuclease/exonuclease/phosphatase family protein [Treponema
vincentii ATCC 35580]
gi|257445379|gb|EEV20447.1| endonuclease/exonuclease/phosphatase family protein [Treponema
vincentii ATCC 35580]
Length = 367
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 38/132 (28%), Gaps = 18/132 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + + + G + GDFN+ + + G +I
Sbjct: 238 QTKAVADFIRAEYEAGNYVIAGGDFNQIFPGTQLRYPLYDEFWAPGKMIGGILPDGWQFA 297
Query: 65 VIKRNKS---------------SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
R S ++ F++ + SIVS + D R +
Sbjct: 298 SDDRVPSCRLNKAPYTSALADENIRKKWPYYVIDGFIVSPNISIVSVETLDESFRYA--- 354
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 355 DHNPVKLRVILN 366
>gi|224133800|ref|XP_002321664.1| predicted protein [Populus trichocarpa]
gi|222868660|gb|EEF05791.1| predicted protein [Populus trichocarpa]
Length = 366
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/160 (9%), Positives = 37/160 (23%), Gaps = 43/160 (26%)
Query: 3 SQQGEWLKKWADQKIK-----TGIPFVIAGDFNRKINSIGDTDDFW-------------- 43
+ + +KW + ++ + P + GD N I + +
Sbjct: 198 EKSFQRRRKWDKRMLEVVVQLSDKPLIWCGDLNVSHEEIDVSHPEFFSAAKVNGYVPPNK 257
Query: 44 --------------------QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ +E++ Y
Sbjct: 258 EDCGQPGFTLSERKRFGAILKEGKLIDAYRFLHKERDMERGFSWSGNPIGKYRGKRMRID 317
Query: 84 NFLIDNSFSIVSYDQ----SDLDTRRSKLSTHCPLTIEYD 119
F++ ++ S HCP+++E
Sbjct: 318 FFIVSEKLKDRIIQCEMHGHGIELEGFYGSDHCPVSLELS 357
>gi|153004094|ref|YP_001378419.1| endonuclease/exonuclease/phosphatase [Anaeromyxobacter sp. Fw109-5]
gi|152027667|gb|ABS25435.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter sp. Fw109-5]
Length = 371
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 9/119 (7%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + ++ P ++ GDFN + + +
Sbjct: 251 QISALVD--EDVLREDGPVILGGDFNA-PDRSQLYERVSSALANAHAQRGLGFGFTYPAL 307
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
V V + + F V D S H P+ +E + G
Sbjct: 308 VRSPFGPVPT--VPLVRIDHLFFSDHFVAVRAGTLDDSGG----SDHRPVFVELAPKAG 360
>gi|34761706|gb|AAQ82023.1| ORF2 [Tetrahymena thermophila]
Length = 1147
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 45/123 (36%), Gaps = 5/123 (4%)
Query: 3 SQQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q L++ Q ++ +I GDFN +++ + +K L F + K
Sbjct: 217 EEQA-LLEEIISQVLQDNRLNHILIYGDFNLDVSTPNSSHADARKTGQIRRLKDFLKSKN 275
Query: 61 ST--CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ +I F+ + + + ++ ++ S H P+ I+
Sbjct: 276 LYIHGTNRHTREAFKQNKIIKTQVDFFISSFAPNSILKIETITHDESNRGSDHYPIRIQI 335
Query: 119 DFE 121
D +
Sbjct: 336 DLQ 338
>gi|323351082|ref|ZP_08086739.1| exodeoxyribonuclease [Streptococcus sanguinis VMC66]
gi|322122806|gb|EFX94515.1| exodeoxyribonuclease [Streptococcus sanguinis VMC66]
gi|325687044|gb|EGD29067.1| exodeoxyribonuclease [Streptococcus sanguinis SK72]
Length = 275
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 33/125 (26%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+ P + GD+N I + + P
Sbjct: 154 ATLDEQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLH 213
Query: 57 QEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + +R+K+S +L N + +D+ + H P+
Sbjct: 214 GDIPNQYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--DHTPIV 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 MEIEL 275
>gi|163787900|ref|ZP_02182346.1| endonuclease/exonuclease/phosphatase family protein
[Flavobacteriales bacterium ALC-1]
gi|159876220|gb|EDP70278.1| endonuclease/exonuclease/phosphatase family protein
[Flavobacteriales bacterium ALC-1]
Length = 340
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 17/115 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q E ++ + K K ++ GDFN S + + F +
Sbjct: 238 FKLQQEQVELFLKHKSKCNYKTIVTGDFNNTAYSYIYKEIKGNNLVDT-----FEEAGNG 292
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
D+ + + + T KLS H P+
Sbjct: 293 FGKTY-------DFKFFPMRIDFI-----LADKDFTVNGFKTYDVKLSDHYPIKA 335
>gi|62085810|gb|AAX63296.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 31/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAASKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 263 ILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|332359057|gb|EGJ36878.1| exodeoxyribonuclease [Streptococcus sanguinis SK49]
Length = 275
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEK 59
+ P + GD+N I + + + G F
Sbjct: 154 ATLDEQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLH 213
Query: 60 ES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+R+K+S +L N + +D+ + H P+
Sbjct: 214 GDIPNQYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--DHTPIV 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 MEIEL 275
>gi|242266565|gb|ACS91130.1| APN2 [Microsporum gypseum]
Length = 596
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/160 (13%), Positives = 30/160 (18%), Gaps = 47/160 (29%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------------ 38
L+ IK G ++ GD N +I
Sbjct: 170 LEARVRNLIKMGKRVILTGDLNISPAAIDSAPATERIKKNTETEEEYVSSPARRLFNGLV 229
Query: 39 ---------TDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
D + D P +R + L +
Sbjct: 230 RRVGSTEETHDIEASPVLRDLCREFHPNRTGMYTCWEQRVNA--RPGNYGSRIDYILCSD 287
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEYD----FEKGNV 125
S HCP+ FE NV
Sbjct: 288 DIRPW--FVESNIQEGLMGSDHCPVYASISDTVPFEGRNV 325
>gi|289616636|emb|CBI56586.1| unnamed protein product [Sordaria macrospora]
Length = 641
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 23/119 (19%), Gaps = 10/119 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L ++ L + + + ++ G G L F +
Sbjct: 199 LKKEAMTLDDFISTPSRRFLNQIVFGGRVIGEPDEGREKPVL-----WDLCREFHPRRPG 253
Query: 62 -TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R + L + S HCP+
Sbjct: 254 MYTCWETRKNA--RPGNYGSRIDYVLCSSGIKDW--FVDANIQEGLLGSDHCPVYATIS 308
>gi|297846512|ref|XP_002891137.1| hypothetical protein ARALYDRAFT_313975 [Arabidopsis lyrata subsp.
lyrata]
gi|297336979|gb|EFH67396.1| hypothetical protein ARALYDRAFT_313975 [Arabidopsis lyrata subsp.
lyrata]
Length = 290
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 11/121 (9%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD-----------TDDFWQKMDPDGLLIRFPQEKES 61
++AGDFN +S ++ + + L +
Sbjct: 166 ISAVENCSPSVILAGDFNSNPSSDVYEYVNSDNIPVMWPLGGEEEETEFGLCSAYGFTKG 225
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
K + + I + S D D +S S H P+ +E++
Sbjct: 226 EPKFTKYVPGFAETLDYVFFTPSDFISPVKLLDSPDVVDFLPNKSHPSDHLPIGVEFEIN 285
Query: 122 K 122
+
Sbjct: 286 R 286
>gi|302897971|ref|XP_003047751.1| hypothetical protein NECHADRAFT_72444 [Nectria haematococca mpVI
77-13-4]
gi|256728682|gb|EEU42038.1| hypothetical protein NECHADRAFT_72444 [Nectria haematococca mpVI
77-13-4]
Length = 305
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 6/116 (5%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
++W + + ++ GDFN N G + P+ + +
Sbjct: 187 REWGSGGVGSPSAVLVGGDFNSSPNDGGYKIMTAPDSGMSDISHLLPKSAHYGNQITYTS 246
Query: 70 KSSLDYFVIDR-----DNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYD 119
D D + + ++ ++ ++S H P+ + D
Sbjct: 247 FGKYDSSGEGWEEARIDFLFIQEPRTAHVKTFGVLANFFDDDVRVSDHRPVVSDLD 302
>gi|38640508|gb|AAQ82028.2| ORF2 [Tetrahymena thermophila]
Length = 1147
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 5/123 (4%)
Query: 3 SQQGEWLKKWADQKIKTGI--PFVIAGDFN-RKINSIGDTDDFWQKMDPDGLLIRFP-QE 58
+Q L++ Q ++ +I GDFN S D + L +
Sbjct: 217 EEQA-LLEEIISQVLQDNRLNHILIYGDFNLDVSTSNSSHSDARKVGQIRRLKDFLKSKN 275
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ +I F+ + + + ++ ++ S H P+ I+
Sbjct: 276 LFIHSTNRHTREAFKQNKIIKTQVDFFISSFAPNSILKIETITHDESNRGSDHYPIRIQI 335
Query: 119 DFE 121
D +
Sbjct: 336 DLQ 338
>gi|886278|gb|AAB00496.1| DNL1L [Homo sapiens]
Length = 302
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 30/105 (28%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN S+ ++ + + E T + + +
Sbjct: 173 QSKDVILLGDFNADCASLTKKRLDKLELRTEPSFHWVIADGEDTTVRASTHCTYDRVVLH 232
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ L + + +S H P+ +E +
Sbjct: 233 GERCRSLLHTAAAFDFPTSFQLTEEEALNISDHYPVEVELKLSQA 277
>gi|325690669|gb|EGD32670.1| exodeoxyribonuclease [Streptococcus sanguinis SK115]
Length = 275
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEK 59
+ P + GD+N I + + + G F
Sbjct: 154 ATLDQQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLH 213
Query: 60 ES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+R+K+S +L N + +D+ + H P+
Sbjct: 214 GDIPNQYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--DHTPIV 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 MEIEL 275
>gi|312129153|ref|YP_003996493.1| endonuclease/exonuclease/phosphatase [Leadbetterella byssophila DSM
17132]
gi|311905699|gb|ADQ16140.1| Endonuclease/exonuclease/phosphatase [Leadbetterella byssophila DSM
17132]
Length = 293
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 11/99 (11%), Positives = 27/99 (27%), Gaps = 2/99 (2%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P ++ GDFN + S + ++ +E T + K +
Sbjct: 197 PQILCGDFNSRFQSKVFSTPRNAGWKEGMEILYGEKEMGFTGHAFKGLQYEKGPSG--GR 254
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + S H + ++
Sbjct: 255 IDFIWYKGDIEVKRAEILRDEVKGVYPSDHFFVLNDFQL 293
>gi|297283268|ref|XP_001084351.2| PREDICTED: deoxyribonuclease-1-like 2-like [Macaca mulatta]
Length = 281
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 3/100 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+ GDFN + + D ++ + + + V + +
Sbjct: 179 DDMLFLGDFNADCSYVRAQDWAAIRLRSSEVFKWLIPDS-ADTTVGNSDCAYDRIVACGA 237
Query: 81 DNKNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPLTIEY 118
+ L S ++ + + T+ +S H P+ +
Sbjct: 238 RLRRSLKPQSATVHDFQEEFGLDQTQALAISDHFPVEVTL 277
>gi|315506688|ref|YP_004085575.1| endonuclease/exonuclease/phosphatase [Micromonospora sp. L5]
gi|315413307|gb|ADU11424.1| Endonuclease/exonuclease/phosphatase [Micromonospora sp. L5]
Length = 320
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 23/142 (16%)
Query: 1 MLSQQGEW--LKKWADQKIK-------TGIPFVIAGDFNRKIN-----------SIGDTD 40
+L + E L+ ++ + G+P ++ GD N +
Sbjct: 172 LLRRTAEAVALRVHLNKALAAAAVNGQPGMPTILCGDLNDGPDAITTVLLEGPADGDVNR 231
Query: 41 DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLI---DNSFSIVSYD 97
L R + + + N +D+ + RD + LI I S
Sbjct: 232 PDKGDAVRLYNLGRRLPPARAYSRIYQGNGELIDHILATRDLQLQLITIDSLVDDITSIG 291
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
S +++ + H P+ ++
Sbjct: 292 ASTRSRKKTVVPDHAPVIARFN 313
>gi|294811940|ref|ZP_06770583.1| Large secreted protein [Streptomyces clavuligerus ATCC 27064]
gi|326440328|ref|ZP_08215062.1| large secreted protein [Streptomyces clavuligerus ATCC 27064]
gi|294324539|gb|EFG06182.1| Large secreted protein [Streptomyces clavuligerus ATCC 27064]
Length = 628
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 14/119 (11%)
Query: 4 QQGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ + + + + +K ++ GD N S + +++
Sbjct: 520 QQAQSVNAFVKKILKADRRADVLVVGDINDFEFSATTQALTDGGALYPAVKSLPRKDR-- 577
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYD 119
V + L S SYD + S H P + +
Sbjct: 578 YSYVF---------QGNSQVLDQILTSPSIRNFSYDSVHINAEFSDQNSDHDPQLLRFR 627
>gi|254391934|ref|ZP_05007127.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|197705614|gb|EDY51426.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
Length = 627
Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 14/119 (11%)
Query: 4 QQGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ + + + + +K ++ GD N S + +++
Sbjct: 519 QQAQSVNAFVKKILKADRRADVLVVGDINDFEFSATTQALTDGGALYPAVKSLPRKDR-- 576
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYD 119
V + L S SYD + S H P + +
Sbjct: 577 YSYVF---------QGNSQVLDQILTSPSIRNFSYDSVHINAEFSDQNSDHDPQLLRFR 626
>gi|83816510|ref|YP_444587.1| dioxygenase, putative [Salinibacter ruber DSM 13855]
gi|83757904|gb|ABC46017.1| dioxygenase, putative [Salinibacter ruber DSM 13855]
Length = 261
Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 34/119 (28%), Gaps = 23/119 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + +Q+ + P ++ GDFN ++ +
Sbjct: 163 QARRIHRHIEQETR---PVLVTGDFNSTP-----HQWAYRHLLQGLRAA----------- 203
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ + L+ + + S L+ +S H P+ + G
Sbjct: 204 ---GGGATFPAGWPLVQIDHVLVGPEWRVGSATVPGLEATDF-VSDHRPVVARVRWRDG 258
>gi|321468777|gb|EFX79760.1| hypothetical protein DAPPUDRAFT_3216 [Daphnia pulex]
Length = 288
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 37/132 (28%), Gaps = 12/132 (9%)
Query: 1 MLSQQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSI-------GDTDDFWQKMDPDGLL 52
+ ++QG+ + + + P ++AGDFN + F D
Sbjct: 155 LRNEQGKDILDFLQNNVDVADCPIIMAGDFNAEPTEPVYSTIRSDSRFGFDSAYRCDVDG 214
Query: 53 IRFPQEKESTCNVIKRNKSS----LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + +DY R F D
Sbjct: 215 AEEAGQEPPYTTWKVRGEGESCHTIDYVFFSRRQLGVNQVLPFPTGEQIGPDRVPSFQYP 274
Query: 109 STHCPLTIEYDF 120
S H L +++D
Sbjct: 275 SDHFSLVVDFDL 286
>gi|293605431|ref|ZP_06687813.1| endonuclease/exonuclease/phosphatase [Achromobacter piechaudii ATCC
43553]
gi|292816159|gb|EFF75258.1| endonuclease/exonuclease/phosphatase [Achromobacter piechaudii ATCC
43553]
Length = 255
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 15/117 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + L + +++ P +IAGDFN + + +
Sbjct: 154 EQLQRLCELVAREVPADEPLLIAGDFND--------------WRLNADRLMAGCGTQEVF 199
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + S S+LS H PL+ E
Sbjct: 200 TTRLGRPARTFPARWPLLRLDRIYVRSVRDWR-PVPLASRVWSRLSDHVPLSAEIAL 255
>gi|291523682|emb|CBK81975.1| Endonuclease/Exonuclease/phosphatase family [Coprococcus catus
GD/7]
Length = 365
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 18/131 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC- 63
Q L ++ + G + GDFN + + D+ + E S C
Sbjct: 239 QIAMLSADMQKEYEVGNYVLCGGDFNHDLKASD-GDEEEHESWAYPFPREALPEHFSFCI 297
Query: 64 -----------NVIKRNK--SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
RN + + F++ ++ ++Y+ D S
Sbjct: 298 DALSEEERNAMWNSARNADMAYVPDVTYTVTLDGFIVSDNIECLTYENVDT---GYSYSD 354
Query: 111 HCPLTIEYDFE 121
H P+ +E+ +
Sbjct: 355 HDPVYMEFKLK 365
>gi|301761530|ref|XP_002916188.1| PREDICTED: nocturnin-like [Ailuropoda melanoleuca]
Length = 452
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 12/112 (10%), Positives = 33/112 (29%), Gaps = 7/112 (6%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KESTCNVIKRNKSSLDY 75
+P ++ GDFN + ++ + + R +
Sbjct: 335 AKVPLIVCGDFNAEPTEEVYKHFASSSLNLSSAYKLLSADGQSEPPYTTWKIRTSGECRH 394
Query: 76 FVI--DRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEYDFEKG 123
+ + ++ +++ +Q + S S H L ++ F +
Sbjct: 395 TLDYIWYSQHALRVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDFSFNEE 446
>gi|156975999|ref|YP_001446905.1| hypothetical protein VIBHAR_04769 [Vibrio harveyi ATCC BAA-1116]
gi|156527593|gb|ABU72678.1| hypothetical protein VIBHAR_04769 [Vibrio harveyi ATCC BAA-1116]
Length = 451
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 10/120 (8%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSI-GDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
++I + AGDFN NS + ++ D +E ++ +
Sbjct: 330 LTKQIPADEAVIYAGDFNIDKNSDFMEYFLMLATLEVDPPTYLGYREATFDPSINSYASA 389
Query: 72 ---------SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
LDY ++ +++ + + + S+ LS H + ++ F++
Sbjct: 390 KYSGGSQSEYLDYVLVSSEHRRAFENTNTVKLRQRVSEETWGEWHLSDHFSVEGQFVFDE 449
>gi|107029003|ref|YP_626098.1| endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia AU
1054]
gi|116689839|ref|YP_835462.1| endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
HI2424]
gi|105898167|gb|ABF81125.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia AU
1054]
gi|116647928|gb|ABK08569.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
HI2424]
Length = 284
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 10/95 (10%), Positives = 25/95 (26%), Gaps = 1/95 (1%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN +S + + + + D
Sbjct: 190 IVCGDFNSAFDSDAYRR-LLEPIADAPGFVDAWIARHPGHTPPPTAGIYDTVQWSDGPLA 248
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + +++ + S H P+ +E
Sbjct: 249 CDFVFVTDTLLPRVIGCEIDGDVRASDHQPVLLEL 283
>gi|332260540|ref|XP_003279344.1| PREDICTED: deoxyribonuclease-1-like 1-like isoform 1 [Nomascus
leucogenys]
gi|332260542|ref|XP_003279345.1| PREDICTED: deoxyribonuclease-1-like 1-like isoform 2 [Nomascus
leucogenys]
gi|332260544|ref|XP_003279346.1| PREDICTED: deoxyribonuclease-1-like 1-like isoform 3 [Nomascus
leucogenys]
Length = 302
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 30/105 (28%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN S+ ++ + + E T + + +
Sbjct: 173 QSKDVILLGDFNADCASLTKKRLDKLELRTEPGFHWVIADGEDTTVRASTHCTYDRIVLH 232
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ L + + +S H P+ +E +
Sbjct: 233 GERCRSLLHTAAAFDFPTSFQLTEEEALNISDHYPVEVELKLSQA 277
>gi|300176314|emb|CBK23625.2| unnamed protein product [Blastocystis hominis]
Length = 252
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 34/131 (25%), Gaps = 20/131 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRK------------INSIGDTDDFWQKMDPDGLLIR 54
E + ++ GDFN S F + G++
Sbjct: 96 ELIMDLVKIIKVDYPNCILLGDFNTAIACRIGWRLCYHPKSSSFYLAFMIRDGGCGMIDC 155
Query: 55 FPQ----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F E+ + + K ++ F D +V S
Sbjct: 156 FRALYPSERNAYSCFNTKLKGRINNFGTRIDYIVCTRPLRNCLVECAI----RSDVTGSD 211
Query: 111 HCPLTIEYDFE 121
H P+ E+DF
Sbjct: 212 HLPVVAEFDFS 222
>gi|237712213|ref|ZP_04542694.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229453534|gb|EEO59255.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 353
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 29/113 (25%), Gaps = 21/113 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E + + T P ++ GDFN + ++ + +
Sbjct: 259 QAEQISSLIN---ATEYPLIVCGDFNDPPGT-----FTYETLKSGLKDGFQTAGE----- 305
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
++ + Y D +S H P+ +E
Sbjct: 306 ---GYGATYRGVHHLLRIDYLFHSTLLEGIKYKVIPYD-----MSDHNPVYLE 350
>gi|237726359|ref|ZP_04556840.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229434885|gb|EEO44962.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 353
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 29/113 (25%), Gaps = 21/113 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E + + T P ++ GDFN + ++ + +
Sbjct: 259 QAEQISSLIN---ATEYPLIVCGDFNDPPGT-----FTYETLKSGLKDGFQTAGE----- 305
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
++ + Y D +S H P+ +E
Sbjct: 306 ---GYGATYRGVHHLLRIDYLFHSTLLEGIKYKVIPYD-----MSDHNPVYLE 350
>gi|257066091|ref|YP_003152347.1| exodeoxyribonuclease III Xth [Anaerococcus prevotii DSM 20548]
gi|256797971|gb|ACV28626.1| exodeoxyribonuclease III Xth [Anaerococcus prevotii DSM 20548]
Length = 274
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 22/136 (16%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------ 49
L ++ + L ++ P + GDFN I M
Sbjct: 141 LREEWDKLYADYLAELDKNKPVIATGDFNVAHEEIDLAHPENNHMSAGFTDEERRGFTNL 200
Query: 50 ------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ + + +R K+S FL+ + D + +D
Sbjct: 201 LNRGFTDTFRHLNKNLEGAYTWWAQRVKTSKIN-NSGWRIDYFLVSDRLMEDVIDSTIID 259
Query: 103 TRRSKLSTHCPLTIEY 118
+ + H P+ +E
Sbjct: 260 SGDRQ--DHTPIMLEI 273
>gi|212274573|ref|NP_001130149.1| hypothetical protein LOC100191243 [Zea mays]
gi|194688404|gb|ACF78286.1| unknown [Zea mays]
Length = 323
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 32/142 (22%), Gaps = 27/142 (19%)
Query: 2 LSQQGEWLKKW------ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL---- 51
L + + W +K++ P ++AGD N SI + +
Sbjct: 186 LRRLNYRINDWDPCFSDFIKKLECSKPVIVAGDLNCARQSIDIHNPQAKTEAAGFTIEER 245
Query: 52 -------------LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
Q + + FL S +
Sbjct: 246 ESFEVNFSRKGLVDTFRKQHPNAVAYTFWGENQRITNKGW--RLDYFLASESIADK--VH 301
Query: 99 SDLDTRRSKLSTHCPLTIEYDF 120
LS H P+ +
Sbjct: 302 DSYTLPDVALSDHSPIGLLLKL 323
>gi|291414604|ref|XP_002723552.1| PREDICTED: deoxyribonuclease I-like 2 [Oryctolagus cuniculus]
Length = 304
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 3/100 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+ GDFN + + D ++ + + + V + +
Sbjct: 203 DDMLFLGDFNADCSYVRAQDWASIRLRSSEVFKWLIPDS-ADTTVGNSDCAYDRIVACGA 261
Query: 81 DNKNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPLTIEY 118
+ L S ++ + + T+ +S H P+ +
Sbjct: 262 RLRRSLKPQSATVHDFQEEFGLDQTQALAISDHFPVEVTL 301
>gi|150377262|ref|YP_001313857.1| endonuclease/exonuclease/phosphatase [Sinorhizobium medicae WSM419]
gi|150031809|gb|ABR63924.1| Endonuclease/exonuclease/phosphatase [Sinorhizobium medicae WSM419]
Length = 268
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 32/117 (27%), Gaps = 16/117 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q L K + V+ GDFN S +
Sbjct: 168 AEQSMRLVKLIESVWPGDERLVVCGDFNLLPQSSTFARLATLGLSDLVTGR--------- 218
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R Y R L+++ +V ++ +S H PL ++
Sbjct: 219 GYTDTRT---SFYEKEGRFADYMLVNDRVDVVGFEVVADPE----VSDHRPLLLKLR 268
>gi|257067959|ref|YP_003154214.1| metal-dependent hydrolase [Brachybacterium faecium DSM 4810]
gi|256558777|gb|ACU84624.1| metal-dependent hydrolase [Brachybacterium faecium DSM 4810]
Length = 270
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 12/118 (10%), Positives = 25/118 (21%), Gaps = 8/118 (6%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-QKMDPDGLLIRFPQEKES 61
++ E L + P V+ GDFN D ++ + ++
Sbjct: 156 ARGAELLAARLRE-AAGAAPLVLMGDFNAAGGQSAAWDVLREAGLEDAHDVAAAHDGQDI 214
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + Y S H ++
Sbjct: 215 GTFPDYGAPEP-----GGTRIDWI-LSRGLDVEQYRAWVPQLGGRAASDHATVSARLR 266
>gi|227502111|ref|ZP_03932160.1| endonuclease/exonuclease/phosphatase [Corynebacterium accolens ATCC
49725]
gi|227077170|gb|EEI15133.1| endonuclease/exonuclease/phosphatase [Corynebacterium accolens ATCC
49725]
Length = 905
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 35/134 (26%), Gaps = 20/134 (14%)
Query: 5 QGEW-LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + L Q P GDFN + DG + + T
Sbjct: 697 QAQAVLDALHKQDDWKDKPLFALGDFNTY-----THETALDVFRNDGFTVPAEKYGADTS 751
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--------------QSDLDTRRSKLS 109
+LD+ + + L D ++ D D + S
Sbjct: 752 YQFGGLLGTLDHVLANEVASGALADAQVWNINADEPVAFEYSRRNYNVVDFYDDSPFRAS 811
Query: 110 THCPLTIEYDFEKG 123
H P+ + + +
Sbjct: 812 DHDPVKVGFTLGED 825
>gi|171914576|ref|ZP_02930046.1| Endonuclease/exonuclease/phosphatase [Verrucomicrobium spinosum DSM
4136]
Length = 804
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 14/113 (12%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
W ++T P V+ GDFN + S G + + + + + +
Sbjct: 695 DWLGPVVET-EPVVLCGDFNFGVGSPG-YKLAITALRDVQSITKGWRPVNTFSS------ 746
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ I + F++ R S H PL +
Sbjct: 747 -----LQPFIRLDHVFISSHFTVEKLRVPRTQVTRV-ASDHLPLVADLRLSSS 793
>gi|296236749|ref|XP_002763464.1| PREDICTED: deoxyribonuclease-1-like 1-like [Callithrix jacchus]
gi|167045821|gb|ABZ10489.1| deoxyribonuclease I-like 1 precursor (predicted) [Callithrix
jacchus]
Length = 302
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 12/101 (11%), Positives = 30/101 (29%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
++ GDFN S+ ++ + + E T + + +
Sbjct: 177 VILLGDFNADCASLTKKRLDKLELRTEPGFHWVIADGEDTTVRASTHCTYDRIVLHGERC 236
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ L + + +S H P+ +E +
Sbjct: 237 QSLLHTAAAFDFPTSFQLTEEEALNISDHYPVEVELKLSQA 277
>gi|329116616|ref|ZP_08245333.1| exodeoxyribonuclease III [Streptococcus parauberis NCFD 2020]
gi|326907021|gb|EGE53935.1| exodeoxyribonuclease III [Streptococcus parauberis NCFD 2020]
Length = 275
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
++ Q + P + GD+N N I + +
Sbjct: 150 AEYLAQ-LDAQKPVLATGDYNVAHNEIDLANPASNRRSAGFTDEERAGFTMLLGHGFTDT 208
Query: 52 LIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + +R+K+S +L N + +++ +
Sbjct: 209 FRHIHGDIPNVYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVLKSEMINSGARQ--D 265
Query: 111 HCPLTIEYDF 120
H P+ +E D
Sbjct: 266 HTPILLEIDL 275
>gi|324993723|gb|EGC25642.1| exodeoxyribonuclease [Streptococcus sanguinis SK405]
gi|324994964|gb|EGC26877.1| exodeoxyribonuclease [Streptococcus sanguinis SK678]
gi|327462994|gb|EGF09315.1| exodeoxyribonuclease [Streptococcus sanguinis SK1]
Length = 275
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 33/125 (26%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+ P + GD+N I + + P
Sbjct: 154 ATLDQQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLH 213
Query: 57 QEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + +R+K+S +L N + +D+ + H P+
Sbjct: 214 GDIPNQYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--DHTPIV 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 MEIEL 275
>gi|227891722|ref|ZP_04009527.1| endonuclease-exonuclease-phosphatase family protein [Lactobacillus
salivarius ATCC 11741]
gi|227866525|gb|EEJ73946.1| endonuclease-exonuclease-phosphatase family protein [Lactobacillus
salivarius ATCC 11741]
Length = 375
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 33/132 (25%), Gaps = 16/132 (12%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKIN-----------SIGDTDDFWQKMDPD 49
M +Q + L + + K G ++ GDFN D D
Sbjct: 245 MRVKQLKLLNSVMESEYKKGNYVIVGGDFNHTFGRKMLTHFKSQQETPDWVSVLSSKDLA 304
Query: 50 GLLIRFPQ-EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + + FL+ + S + +
Sbjct: 305 PDIRMVHAKNENTVPTCRGTDIPYQKGKTYTTVIDGFLVSKNVQATSENINTEFAYA--- 361
Query: 109 STHCPLTIEYDF 120
H P+ + +
Sbjct: 362 -DHNPVKLSFKL 372
>gi|116328809|ref|YP_798529.1| metal-dependent hydrolase [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116331719|ref|YP_801437.1| metal-dependent hydrolase [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116121553|gb|ABJ79596.1| Metal-dependent hydrolase [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116125408|gb|ABJ76679.1| Metal-dependent hydrolase [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 362
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 30/130 (23%), Gaps = 23/130 (17%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKI----------------NSIGDTDDFWQK 45
+ +Q E + + G +V+ GDFN + + + +
Sbjct: 227 MRRQVETIAGLLKELDLAGHYWVLGGDFNLLPPGFDRKLMHPNGAFFYSDEQEIKPLFDR 286
Query: 46 MDPDGLLIRFP--QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
++ + DR ++ Y
Sbjct: 287 WSSAVPFNILNGVGREKYYTY----YPNDPAIGKPDRTIDYIFYSSNLKQTEYKVD-QGE 341
Query: 104 RRSKLSTHCP 113
+S H P
Sbjct: 342 TLWTISDHFP 351
>gi|886276|gb|AAB00495.1| DNase I [Homo sapiens]
gi|1203972|gb|AAA92647.1| DNase I-like protein [Homo sapiens]
Length = 302
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 30/105 (28%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN S+ ++ + + E T + + +
Sbjct: 173 QSKDVILLGDFNADCASLTKKRLDKLELRTEPGFHWVIADGEDTTVRASTHCTYARVVLH 232
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ L + + +S H P+ +E +
Sbjct: 233 GERCRSLLHTAAAFDFPTSFQLTEEEALNISDHYPVEVELKLSQA 277
>gi|171910435|ref|ZP_02925905.1| hypothetical protein VspiD_04665 [Verrucomicrobium spinosum DSM
4136]
Length = 280
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 11/114 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
E L + K G P V+ GDFN +++ G E++
Sbjct: 163 VEQLLGHIKDQCKAGEPVVVTGDFNTSKE----------QLNLAGDRTLLKLEEQGFFWA 212
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-STHCPLTIEY 118
+ + + + + S H P+ ++
Sbjct: 213 FEGVPLKDRITIPGGGRYPDACFDHVYTRDLGRPVAAVLKDTPGSDHFPVAVDL 266
>gi|160878851|ref|YP_001557819.1| endonuclease/exonuclease/phosphatase [Clostridium phytofermentans
ISDg]
gi|160427517|gb|ABX41080.1| Endonuclease/exonuclease/phosphatase [Clostridium phytofermentans
ISDg]
Length = 258
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 11/97 (11%), Positives = 24/97 (24%), Gaps = 12/97 (12%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
++ GDFN NS + + D
Sbjct: 172 MILTGDFNGYPNSEEISLIAKSEFLRDL--------TSGMEGTFHDFGRMQP----AEKI 219
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ + + + LS H P+++ +
Sbjct: 220 DYIVVSSGLKCCTRELWTDCENGVFLSDHYPVSVVLE 256
>gi|330811892|ref|YP_004356354.1| hypothetical protein PSEBR_a4928 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327380000|gb|AEA71350.1| Conserved hypothetical protein; putative exported protein
[Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 359
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 36/135 (26%), Gaps = 15/135 (11%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK----------MDPDGL 51
L +Q + K D+ G P++I GDFN Q+ + D
Sbjct: 226 LPRQITAVAKALDKFESAGTPWLIGGDFNLLPLGQYRRLPTEQRTPYSADSPLHLLWDKY 285
Query: 52 LIRFPQEKEST---CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + S + + + DR V ++
Sbjct: 286 PMIPTNNEASGIDREHWLTHYPNDPGLNGPDRTVDYLFYSPRLKRVEAQV--RQDDTLRI 343
Query: 109 STHCPLTIEYDFEKG 123
S H P+ +
Sbjct: 344 SDHLPVIARFLLPAA 358
>gi|325694998|gb|EGD36902.1| exodeoxyribonuclease [Streptococcus sanguinis SK150]
Length = 275
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 22/123 (17%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEKES 61
+ P + GD+N I + + + G F
Sbjct: 156 LDKQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLHGD 215
Query: 62 ----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+R+K+S +L N + +D+ + H P+ +E
Sbjct: 216 IPNQYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--DHTPIVME 272
Query: 118 YDF 120
+
Sbjct: 273 IEL 275
>gi|300692524|ref|YP_003753519.1| metal dependent endonuclease/phosphatase [Ralstonia solanacearum
PSI07]
gi|299079584|emb|CBJ52262.1| putative metal dependent endonuclease/phosphatase [Ralstonia
solanacearum PSI07]
Length = 248
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 13/117 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L + + T P ++AGDFN N + Q + + R +
Sbjct: 143 QRQAEALIERVRSVVPTDAPLLVAGDFNDWNNRLD--RVICQALGATEVADRSAGARPLR 200
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + ++ + D + S H PL +
Sbjct: 201 TFPSH---------LPWLRLDRIYVRGFDIERAHALTGRDWAQR--SDHVPLLADLS 246
>gi|222619409|gb|EEE55541.1| hypothetical protein OsJ_03775 [Oryza sativa Japonica Group]
Length = 360
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 26/124 (20%), Gaps = 21/124 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL-----------------LIRFPQEK 59
++ P ++AGD N SI + + Q
Sbjct: 205 LEKSKPVIVAGDLNCARQSIDIHNPPAKTKSAGFTIEERESFETNFSSKGLVDTFRKQHP 264
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + FL S + S H P+ + +
Sbjct: 265 NAVGYTFWGENQRITNKGW--RLDYFLASESITDK--VHDSYILPDVSFSDHSPIGLVFV 320
Query: 120 FEKG 123
Sbjct: 321 LRPS 324
>gi|437053|gb|AAA03710.1| DNaseI precursor [Mus musculus]
Length = 284
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 38/119 (31%), Gaps = 5/119 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D K G + GDFN + + + ++ + + +
Sbjct: 165 EIDALYDVYLDVWQKWGLEDIMFMGDFNAGCSYVTSSQWSSIRLRTSPIFQWLIPDS-AD 223
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEYD 119
V + + V+ + ++ NS + + +S H P+ +
Sbjct: 224 TTVTSTHCAYDRIVVVRALLQAAVVPNSAVPFDFQAEYGLSNQLAEAISDHYPVEVTLR 282
>gi|229826178|ref|ZP_04452247.1| hypothetical protein GCWU000182_01550 [Abiotrophia defectiva ATCC
49176]
gi|229789048|gb|EEP25162.1| hypothetical protein GCWU000182_01550 [Abiotrophia defectiva ATCC
49176]
Length = 357
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 14/128 (10%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIG----------DTDDFWQKMDP-DGLLI 53
Q + L +++ K G V GDFN+ +S + +
Sbjct: 233 QTKALLDIMEKEYKEGNYVVAGGDFNQSFSSADLSEFEVGNKGLWKPGRIEAKDFEENFN 292
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ TC + R D F+ + ++S LD S H P
Sbjct: 293 LYMDASVPTCRSLDRAYDKADNKFQYYVIDGFITSKNVEVISQKTIGLDFEN---SDHNP 349
Query: 114 LTIEYDFE 121
+ + +
Sbjct: 350 IEMVIRLK 357
>gi|17987602|ref|NP_540236.1| hypothetical protein BMEI1319 [Brucella melitensis bv. 1 str. 16M]
gi|17983310|gb|AAL52500.1| hypothetical membrane spanning protein [Brucella melitensis bv. 1
str. 16M]
Length = 256
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 145 QQSEQIEALSEQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 197
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 198 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 246
>gi|93004917|ref|YP_579354.1| endonuclease/exonuclease/phosphatase [Psychrobacter cryohalolentis
K5]
gi|92392595|gb|ABE73870.1| Endonuclease/exonuclease/phosphatase [Psychrobacter cryohalolentis
K5]
Length = 257
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 14/117 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E + + +I P ++AGDFN W+KM D L E+
Sbjct: 154 KQYEAISNYVRDEIAPDQPLILAGDFND-----------WKKMSCDRLASSLGM-TEAFK 201
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + + I S LS H PL+ E
Sbjct: 202 HCHGKLLPTFPAKLPVLSLDRIYVR-NLRIKDAWVHTGKP-WSTLSDHLPLSAELAL 256
>gi|224023542|ref|ZP_03641908.1| hypothetical protein BACCOPRO_00244 [Bacteroides coprophilus DSM
18228]
gi|224016764|gb|EEF74776.1| hypothetical protein BACCOPRO_00244 [Bacteroides coprophilus DSM
18228]
Length = 356
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 34/119 (28%), Gaps = 19/119 (15%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + Q + + K + ++ GDFN S + + + E+
Sbjct: 254 IRAAQADSVAKVIAEY--GYDRMLVCGDFNDSPLSYA-RRVIARGLQDAYV------ERG 304
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++ + L F I+ + + S H P+ +
Sbjct: 305 NGPGFSYNQN------LLYFRIDHILAGTDFRILHCEVDRSI----RTSDHYPVWCLLE 353
>gi|221633952|ref|YP_002523178.1| putative endonuclease/exonuclease/phosphatase family protein
[Thermomicrobium roseum DSM 5159]
gi|221156684|gb|ACM05811.1| putative endonuclease/exonuclease/phosphatase family protein
[Thermomicrobium roseum DSM 5159]
Length = 608
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 28/117 (23%), Gaps = 25/117 (21%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E L + P V+ GDFN + S + + +
Sbjct: 517 QIEELLVFLQPL----RPLVLGGDFNAEPGSPELIRLSESGLIDAAAAVGATDPTSAD-- 570
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
DR I + ++ + S H P+ +
Sbjct: 571 --------------DRRIDYLFITDELRPLAGSVPPIS-----ASDHRPVVVRLALP 608
>gi|117644396|emb|CAL37693.1| hypothetical protein [synthetic construct]
gi|261859534|dbj|BAI46289.1| deoxyribonuclease I-like 1 [synthetic construct]
Length = 302
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 30/105 (28%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN S+ ++ + + E T + + +
Sbjct: 173 QSKDVILLGDFNADCASLTKKRLDKLELRTEPGFHWVIADGEDTTVRASTHCTYDRVVLH 232
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ L + + +S H P+ +E +
Sbjct: 233 GERCRSLLHTAAAFDFPTSFQLTEEEALNISDHYPVEVELKLSQA 277
>gi|62085782|gb|AAX63282.1| DNA lyase [Beauveria bassiana]
gi|62085784|gb|AAX63283.1| DNA lyase [Beauveria bassiana]
Length = 579
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 32/155 (20%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRK----------------------INSIGDT 39
+Q E L I G V+AGD N S+
Sbjct: 143 RQSFVEALDVRIRNLIAVGKQVVLAGDLNIIRGEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + + ++E K + +
Sbjct: 203 RILNQLLFEGTVFGDRDDDRERAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 263 ILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|54696840|gb|AAV38792.1| deoxyribonuclease I-like 1 [synthetic construct]
gi|61365622|gb|AAX42737.1| deoxyribonuclease I-like 1 [synthetic construct]
Length = 303
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 30/105 (28%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN S+ ++ + + E T + + +
Sbjct: 173 QSKDVILLGDFNADCASLTKKRLDKLELRTEPGFHWVIADGEDTTVRASTHCTYDRVVLH 232
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ L + + +S H P+ +E +
Sbjct: 233 GERCRSLLHTAAAFDFPTSFQLTEEEALNISDHYPVEVELKLSQA 277
>gi|5803007|ref|NP_006721.1| deoxyribonuclease-1-like 1 precursor [Homo sapiens]
gi|58430942|ref|NP_001009932.1| deoxyribonuclease-1-like 1 precursor [Homo sapiens]
gi|58430944|ref|NP_001009933.1| deoxyribonuclease-1-like 1 precursor [Homo sapiens]
gi|58430946|ref|NP_001009934.1| deoxyribonuclease-1-like 1 precursor [Homo sapiens]
gi|1352319|sp|P49184|DNSL1_HUMAN RecName: Full=Deoxyribonuclease-1-like 1; AltName: Full=DNase X;
AltName: Full=Deoxyribonuclease I-like 1; Short=DNase
I-like 1; AltName: Full=Muscle-specific DNase I-like;
AltName: Full=XIB; Flags: Precursor
gi|929628|emb|CAA62037.1| DNase protein [Homo sapiens]
gi|1620214|gb|AAB17022.1| XIB [Homo sapiens]
gi|16306751|gb|AAH01561.1| Deoxyribonuclease I-like 1 [Homo sapiens]
gi|24081084|gb|AAH28092.1| Deoxyribonuclease I-like 1 [Homo sapiens]
gi|57284183|emb|CAI43204.1| deoxyribonuclease I-like 1 [Homo sapiens]
gi|119593137|gb|EAW72731.1| deoxyribonuclease I-like 1, isoform CRA_a [Homo sapiens]
gi|119593138|gb|EAW72732.1| deoxyribonuclease I-like 1, isoform CRA_a [Homo sapiens]
gi|119593139|gb|EAW72733.1| deoxyribonuclease I-like 1, isoform CRA_a [Homo sapiens]
gi|119593140|gb|EAW72734.1| deoxyribonuclease I-like 1, isoform CRA_a [Homo sapiens]
gi|119593141|gb|EAW72735.1| deoxyribonuclease I-like 1, isoform CRA_a [Homo sapiens]
gi|123981556|gb|ABM82607.1| deoxyribonuclease I-like 1 [synthetic construct]
gi|123996381|gb|ABM85792.1| deoxyribonuclease I-like 1 [synthetic construct]
Length = 302
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 30/105 (28%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN S+ ++ + + E T + + +
Sbjct: 173 QSKDVILLGDFNADCASLTKKRLDKLELRTEPGFHWVIADGEDTTVRASTHCTYDRVVLH 232
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ L + + +S H P+ +E +
Sbjct: 233 GERCRSLLHTAAAFDFPTSFQLTEEEALNISDHYPVEVELKLSQA 277
>gi|330953940|gb|EGH54200.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae Cit 7]
Length = 261
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 32/118 (27%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + L + +I G P ++AGDFN + + K
Sbjct: 160 RQQLKLLNELM-ARIPEGEPVIVAGDFNDWRQRADA-SLQGSGLHEVFVERFGAPAKSFP 217
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N+ S S S LS H PL +E
Sbjct: 218 ARW------------PLLRLDRIYVRNATSHRPKVLSSRPW--SHLSDHAPLAVELTL 261
>gi|326318344|ref|YP_004236016.1| endonuclease/exonuclease/phosphatase [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375180|gb|ADX47449.1| Endonuclease/exonuclease/phosphatase [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 252
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 18/117 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L+++ +++ G P ++AGDFN + L + E +
Sbjct: 154 RQVAQLQRFVAREVPDGAPLLVAGDFND-------WGQQVKHALAAFGLREYEGEPRALT 206
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + ++S H PL E+
Sbjct: 207 YP---------ARLPLVQLDHVYVR-GMEPMGLHVPRG-RIWWRMSDHLPLIAEFRL 252
>gi|311262545|ref|XP_003129235.1| PREDICTED: nocturnin-like [Sus scrofa]
Length = 427
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 31/131 (23%), Gaps = 17/131 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KEST 62
+ L+ + IP +I GDFN + ++ + +
Sbjct: 302 CDLLQNLQNITQGAKIPLIICGDFNAEPTEEVYKHFASSSLNLSSAYKLLSADGQSEPPY 361
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------SKLSTHCP 113
R + V L + + S H
Sbjct: 362 TTWKIRTSGECRHT-----LDYIWYSRQALSVRSALDLLTEEQIGPNRLPSFNYPSDHLS 416
Query: 114 LTIEYDFEKGN 124
L ++ F + +
Sbjct: 417 LVCDFSFNEES 427
>gi|297622787|ref|YP_003704221.1| endonuclease/exonuclease/phosphatase [Truepera radiovictrix DSM
17093]
gi|297163967|gb|ADI13678.1| Endonuclease/exonuclease/phosphatase [Truepera radiovictrix DSM
17093]
Length = 865
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 26/116 (22%), Gaps = 18/116 (15%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
++ GD N L Q+ V +LDY +
Sbjct: 661 DTDVLLMGDLNAYALEDPIAVLTGSGF---ENLTLRLQDAARYSFVFDGESGTLDYALAS 717
Query: 80 RDN--------KNFLIDNSFSIVSYD-------QSDLDTRRSKLSTHCPLTIEYDF 120
+ + + YD + + S H P+ I
Sbjct: 718 PSLAAQVTGVDIWHINPDEPRALEYDSAPRFGGEDRFTPTPYRSSDHDPVIIGLSL 773
>gi|227530634|ref|ZP_03960683.1| exodeoxyribonuclease III [Lactobacillus vaginalis ATCC 49540]
gi|227349415|gb|EEJ39706.1| exodeoxyribonuclease III [Lactobacillus vaginalis ATCC 49540]
Length = 275
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 43/130 (33%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIR 54
+++ QK+ P + +GDFN SI + K+ G
Sbjct: 150 REYL-QKLDQQKPVIASGDFNVAHESIDLAHPENNHHSAGFTDEEREHFTKLLAAGFTDS 208
Query: 55 FPQ----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + + +R +S +L+ + + + + +D+ +
Sbjct: 209 FRHLNPEKTGAYSWWAQRVITSKQN-NSGWRIDYWLVSDRLADKIKNSTMIDSGERR--D 265
Query: 111 HCPLTIEYDF 120
H P+ ++ D
Sbjct: 266 HTPIELDIDL 275
>gi|195620624|gb|ACG32142.1| hypothetical protein [Zea mays]
Length = 304
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 32/142 (22%), Gaps = 27/142 (19%)
Query: 2 LSQQGEWLKKW------ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL---- 51
L + + W +K++ P ++AGD N SI + +
Sbjct: 167 LRRLNYRINDWDPCFSDFIKKLECSKPVIVAGDLNCARQSIDIHNPQAKTEAAGFTIEER 226
Query: 52 -------------LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
Q + + FL S +
Sbjct: 227 ESFEVNFSRKGLVDTFRKQHPNAVAYTFWGENQRITNKGW--RLDYFLASESIADK--VH 282
Query: 99 SDLDTRRSKLSTHCPLTIEYDF 120
LS H P+ +
Sbjct: 283 DSYTLPDVALSDHSPIGLLLKL 304
>gi|27806969|ref|NP_776959.1| deoxyribonuclease-1 precursor [Bos taurus]
gi|6015029|sp|P00639|DNAS1_BOVIN RecName: Full=Deoxyribonuclease-1; AltName: Full=Deoxyribonuclease
I; Short=DNase I; Flags: Precursor
gi|2546888|emb|CAA04819.1| pancreatic deoxyribonuclease I [Bos taurus]
gi|148745517|gb|AAI42350.1| Deoxyribonuclease I [Bos taurus]
gi|296473424|gb|DAA15539.1| deoxyribonuclease-1 precursor [Bos taurus]
Length = 282
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 4/110 (3%)
Query: 12 WADQKIKTGIP-FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ D + K + ++ GDFN + + + ++ + + N
Sbjct: 173 YLDVQQKWHLNDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLIPDS-ADTTATSTNC 231
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
+ V ++ ++ S + + + + L S H P+ +
Sbjct: 232 AYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTL 281
>gi|312864007|ref|ZP_07724243.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
vestibularis F0396]
gi|311100420|gb|EFQ58627.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
vestibularis F0396]
Length = 271
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 25/102 (24%), Gaps = 2/102 (1%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
G P ++AGDFN G + + S V
Sbjct: 172 GKPLILAGDFNNPAGREGYQAILASPLTLQDSFQVAQETNGSYT-VGPGIDGWKGNE-EP 229
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+++ + +S H L E F+
Sbjct: 230 LRIDYVFASQEWAVNHLSVIFDGNNQPLVSDHYGLEAELTFK 271
>gi|307353178|ref|YP_003894229.1| deoxyribonuclease I [Methanoplanus petrolearius DSM 11571]
gi|307156411|gb|ADN35791.1| Deoxyribonuclease I [Methanoplanus petrolearius DSM 11571]
Length = 431
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 32/119 (26%), Gaps = 6/119 (5%)
Query: 3 SQQGEWL---KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
++ + L + + + ++ GDFN + + D + +
Sbjct: 188 EEEIDALTDVADYCTEILPEDEMVILMGDFNADCSYFDEDD-ASSPLRSGEYSWLIGNDL 246
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + V+ K + D +S H P+ ++
Sbjct: 247 --DTTTKSTDCTYDRIVVLGDYQKYYTGDAGVIRFDELYDLDQDLTEDVSDHYPVYAKF 303
>gi|199597635|ref|ZP_03211063.1| Metal-dependent hydrolase [Lactobacillus rhamnosus HN001]
gi|258509776|ref|YP_003172527.1| metal-dependent hydrolase [Lactobacillus rhamnosus GG]
gi|199591442|gb|EDY99520.1| Metal-dependent hydrolase [Lactobacillus rhamnosus HN001]
gi|257149703|emb|CAR88676.1| Metal-dependent hydrolase [Lactobacillus rhamnosus GG]
gi|259651040|dbj|BAI43202.1| putative hydrolase [Lactobacillus rhamnosus GG]
Length = 355
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 42/133 (31%), Gaps = 18/133 (13%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ ++ L K+ + + G ++AGD+N ++ + +D + + +
Sbjct: 226 QQAQFAKLFKYINHAYQQGNYVMVAGDYNHRLLKNTAEIFHTKDLDETWTHLFPKSKLPA 285
Query: 62 TCN-------------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
V ++ +++ + S +
Sbjct: 286 GFYIPTMGLAAAKVPSVRALDQPYKPGKSFVTLIDGYILSPNIKAESVHVVST---GFQY 342
Query: 109 STHCPLTIEYDFE 121
S H P+ +++ +
Sbjct: 343 SDHNPVVLKFQLK 355
>gi|170016857|ref|YP_001727776.1| exodeoxyribonuclease III [Leuconostoc citreum KM20]
gi|169803714|gb|ACA82332.1| Exodeoxyribonuclease III [Leuconostoc citreum KM20]
Length = 274
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 23/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
+ + + + P + +GD N I + +
Sbjct: 144 DAYRAYIQA-LDAQKPVIFSGDMNVAHEEIDLKNPKTNHNSAGFTDQEREKFSALLRAGF 202
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
D + ++P++ + +K+S +L+ + + +DT +
Sbjct: 203 TDTMRSQYPEQTGLYTWWAQISKTSKIN-NSGWRIDYYLVSERLAPKVKTTAVIDTGLRQ 261
Query: 108 LSTHCPLTIEYDFEK 122
H P+T+E K
Sbjct: 262 --DHAPITLEITINK 274
>gi|156386929|ref|XP_001634163.1| predicted protein [Nematostella vectensis]
gi|156221243|gb|EDO42100.1| predicted protein [Nematostella vectensis]
Length = 286
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 4/117 (3%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+ K+ QK IP ++ GDFN + F + + + R
Sbjct: 171 IDKFLKQKELHSIPVILTGDFNS-PETNPVYQ-FVKGSGFASSYKVVNGREAGVTHKDHR 228
Query: 69 NKSSL-DYFVIDRDNKNFLIDNSFSIVSYDQSDLDT-RRSKLSTHCPLTIEYDFEKG 123
+ DY + S ++ +D +S H + E+D K
Sbjct: 229 GRELSVDYIFYRNSGSCAISPKSSIMLPQQYNDQVWPEEFTISDHRMIMTEFDMGKS 285
>gi|301347815|ref|ZP_07228556.1| nuclease [Acinetobacter baumannii AB056]
Length = 555
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 38/145 (26%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +W + ++ GD N + Q ++
Sbjct: 378 KAVDQIVQWLAKNPTQVPKQNALLVGDMNSYAKEAPILAFEKANYKVLLNDAKVGQGAQA 437
Query: 62 TCNVIK--------RNKSSLDYFVIDRDN--------KNFLIDNSFSIVSYDQSD----- 100
V +LD+ + D D + + ++ Y++
Sbjct: 438 YSYVFGVASDANGNGGVGNLDHAIADADLYPKVVRTFAWHINADEPMVLDYNEEYKTDEQ 497
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D
Sbjct: 498 KALFYGEDAYRSSDHDPVIVDLDLN 522
>gi|296085488|emb|CBI29220.3| unnamed protein product [Vitis vinifera]
Length = 393
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 36/132 (27%), Gaps = 15/132 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL--------- 51
+LS+ + K K + ++AGDFN L
Sbjct: 258 LLSRLAQ-FKTVVSDKFECTPSVLVAGDFNSTPGDKVYQYLVSGNSSVPQLECLDGLPIP 316
Query: 52 ---LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDLDTRRS 106
+ F + + N ++LDY + S D +
Sbjct: 317 LCSVYDFTRGEPPFTNCTPDFTNTLDYIFFSPSGHIKPVSFLELPEPDSSDVAGGLPNHH 376
Query: 107 KLSTHCPLTIEY 118
S H P+ E+
Sbjct: 377 HPSDHLPIGAEF 388
>gi|294901077|ref|XP_002777223.1| retrovirus polyprotein, putative [Perkinsus marinus ATCC 50983]
gi|239884754|gb|EER09039.1| retrovirus polyprotein, putative [Perkinsus marinus ATCC 50983]
Length = 2861
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 34/143 (23%), Gaps = 35/143 (24%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------- 41
+ +WL+ A +K P +IAGD N + + D
Sbjct: 992 FRRYMKWLRSRAGEK-----PLIIAGDLNACGSDLDIGDTRREAPHSPSIQPCEVEAFER 1046
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+++ E + + R L+ +
Sbjct: 1047 LQREVSLCDTFRIVHPE-VAGVYSFY-CNAYEKKLNFGRRIDYILVSSE--QSDCVVDST 1102
Query: 102 DTR-----RSKLSTHCPLTIEYD 119
+ HCP+ E
Sbjct: 1103 VFYAEFGLGYRP-DHCPILAELR 1124
>gi|150008302|ref|YP_001303045.1| hypothetical protein BDI_1671 [Parabacteroides distasonis ATCC
8503]
gi|255015456|ref|ZP_05287582.1| hypothetical protein B2_16223 [Bacteroides sp. 2_1_7]
gi|149936726|gb|ABR43423.1| conserved hypothetical protein with
endonuclease/exonuclease/phosphatase family domain
[Parabacteroides distasonis ATCC 8503]
Length = 306
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 35/139 (25%), Gaps = 31/139 (22%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ + + + + +P ++ GDFN S Q +D G++ + +
Sbjct: 168 AESAKLILEKIKE-FPKKLPAILTGDFNVDQTSESY-----QLLDGSGIMRDSYEIADFR 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR------------------ 104
D + + F + Y R
Sbjct: 222 YAPNGTFNGFHPDRKTDSRIDHLFLTKEFEVKKYGILTDTYRSEAKESARKEQNGNFPKE 281
Query: 105 -------RSKLSTHCPLTI 116
S H P+ I
Sbjct: 282 VSLSKYEARTPSDHFPVMI 300
>gi|326801928|ref|YP_004319747.1| endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
gi|326552692|gb|ADZ81077.1| Endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
Length = 310
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 16/144 (11%), Positives = 32/144 (22%), Gaps = 31/144 (21%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + + + ++ GDFN +S + D + +
Sbjct: 173 KESAKLILSKVKE-LAGNHTAILTGDFNVDQHSNSYQVLEQSHILQDAFEAAPFRYVTNG 231
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL--------------------- 101
+ D + + F + Y
Sbjct: 232 T-----FNNFNPNSKTDSRIDHIFLTTDFKVHKYGILTDTYRSTLQNPQEAYQSGNFPKE 286
Query: 102 ----DTRRSKLSTHCPLTIEYDFE 121
D R S H P+ I D
Sbjct: 287 VRLTDHRARVPSDHFPVMISLDMP 310
>gi|170733178|ref|YP_001765125.1| endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
MC0-3]
gi|169816420|gb|ACA91003.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
MC0-3]
Length = 284
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 11/95 (11%), Positives = 26/95 (27%), Gaps = 1/95 (1%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN +S F + + + + D
Sbjct: 190 IVCGDFNSAFDSDAYRR-FVEPIADAPSFVDAWIARHPGHTPPPTAGIYDTAQWSDGPLA 248
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + +++ + S H P+ +E
Sbjct: 249 CDFVFVTDTLLPRVIGCEIDGDVRASDHQPVLLEL 283
>gi|291234351|ref|XP_002737114.1| PREDICTED: deoxyribonuclease I-like [Saccoglossus kowalevskii]
Length = 472
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GDFN + + D ++ D ++ + V + N V
Sbjct: 201 EDVIILGDFNAGCDYVTSWD--NIRLRTDNRFTWLISDR-ADTTVSRLNCPYDRIVVAGA 257
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPLTIEY 118
+ S + +DQ+ + +S H P+ ++
Sbjct: 258 TMLQSVWPGSSDVFYFDQAYGLSYDQTNDVSDHYPVELKI 297
>gi|210621450|ref|ZP_03292642.1| hypothetical protein CLOHIR_00585 [Clostridium hiranonis DSM 13275]
gi|210154765|gb|EEA85771.1| hypothetical protein CLOHIR_00585 [Clostridium hiranonis DSM 13275]
Length = 358
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 22/128 (17%), Positives = 40/128 (31%), Gaps = 12/128 (9%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L++ + + K G + GD+N I + + PD
Sbjct: 234 QKQLNMLEEILEDEYKKGNYVIAGGDWNHVIPTTDINKFAKTEERPDWYDYIPENFSPKG 293
Query: 63 CNVIKRNK---------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
F++ ++ ++V+ + SDL K S H P
Sbjct: 294 YRFEVDENVPTNRTAGIPYDKDVNFTAIIDGFIVSDNINVVAKNGSDLQ---FKYSDHNP 350
Query: 114 LTIEYDFE 121
TIE+
Sbjct: 351 TTIEFKLN 358
>gi|145545333|ref|XP_001458351.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426170|emb|CAK90954.1| unnamed protein product [Paramecium tetraurelia]
Length = 326
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 23/139 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVI-AGDFNRKINSIGDTDD-------------FWQKMDPDG 50
Q L ++ + + ++ +I GDFN S Q +
Sbjct: 186 QIVQLVQFMEAQKESEDQILIFCGDFNSLPKSNPIQYIQKNNPIVERIEMSTNQIKLQND 245
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDR-DNKNFLIDNSFSIVSYDQSDLD------- 102
+ + K + + + +Y + N+ +
Sbjct: 246 IFQHYGPPKLNWESAYHPFPTFTNYTNNFKGCIDYIYYHNAKVEKILSIPNQSLLQKEVA 305
Query: 103 -TRRSKLSTHCPLTIEYDF 120
+ S H P+ +DF
Sbjct: 306 LPNSNFPSDHVPILAYFDF 324
>gi|332239853|ref|XP_003269109.1| PREDICTED: deoxyribonuclease-1-like 2-like [Nomascus leucogenys]
Length = 228
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 12/100 (12%), Positives = 32/100 (32%), Gaps = 3/100 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+ GDFN + + D ++ + + + V + +
Sbjct: 126 DDMLFLGDFNADCSYVRAQDWAAIRLRSSEVFKWLIPDS-ADTTVGNSDCAYDRIVACGA 184
Query: 81 DNKNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPLTIEY 118
+ L S ++ ++ + T+ +S H P+ +
Sbjct: 185 RLRRSLKPQSATVHNFQEEFGLDQTQALAISDHFPVEVTL 224
>gi|319409386|emb|CBI83030.1| exodeoxyribonuclease III [Bartonella schoenbuchensis R1]
Length = 271
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 5/100 (5%)
Query: 29 FNRKINSIGDTDDFWQKMDPDGLLIR----FPQEKESTCNVIKRNKSSL-DYFVIDRDNK 83
N ++ +T+ G + FP + R + D+
Sbjct: 171 LNVVSHTPVETERLQALCREGGWIDLMRIKFPVPAKLYTWWSYRARDFALSDRGRRLDHI 230
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
D + + + S H P+ +DF +
Sbjct: 231 WSSPDLAPFMDDLSIFRAARGEPQPSDHVPVQTVFDFSRE 270
>gi|258540959|ref|YP_003175458.1| metal-dependent hydrolase [Lactobacillus rhamnosus Lc 705]
gi|257152635|emb|CAR91607.1| Metal-dependent hydrolase [Lactobacillus rhamnosus Lc 705]
Length = 355
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 42/133 (31%), Gaps = 18/133 (13%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ ++ L K+ + + G ++AGD+N ++ + +D + + +
Sbjct: 226 QQAQFAKLFKYINHAYQQGNYVMVAGDYNHRLLKNTAEIFHTKDLDETWTHLFPKSKLPA 285
Query: 62 TCN-------------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
V ++ +++ + S +
Sbjct: 286 GFYIPTMGLAAAKVPSVRALDQPYKPGKSFVTLIDGYILSPNIKAESVHVVST---GFQY 342
Query: 109 STHCPLTIEYDFE 121
S H P+ +++ +
Sbjct: 343 SDHNPVVLKFQLK 355
>gi|297200389|ref|ZP_06917786.1| endonuclease/exonuclease/phosphatase [Streptomyces sviceus ATCC
29083]
gi|197709508|gb|EDY53542.1| endonuclease/exonuclease/phosphatase [Streptomyces sviceus ATCC
29083]
Length = 275
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 25/129 (19%), Gaps = 17/129 (13%)
Query: 4 QQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDT-------DDFWQKMDPDGLLIRF 55
QQ L ++ T P VI GDFN +S
Sbjct: 145 QQVTALAEFVATHRSGTDFPPVITGDFNAWPDSDEIRLFGGYKTAPAAPGQLFLDAWEYA 204
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS------FSIVSYDQSDLDTRRSKLS 109
S + + + + D S
Sbjct: 205 NPTAPSATW---DPANPYVRMSPPARIDYIHVGLAGPAGLGHVLKVRRAGDGPVDGVWPS 261
Query: 110 THCPLTIEY 118
H + +
Sbjct: 262 DHLAVVADL 270
>gi|188991373|ref|YP_001903383.1| Endonuclease/exonuclease/phosphatase family protein [Xanthomonas
campestris pv. campestris str. B100]
gi|167733133|emb|CAP51331.1| Endonuclease/exonuclease/phosphatase family protein [Xanthomonas
campestris pv. campestris]
Length = 315
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 10/119 (8%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + P VIAGDFN +++ + + + + +
Sbjct: 197 RQVADLLDFIASN-SNQAPVVIAGDFNTAADTLDL-EALRKGYGDSYGSVHRNSDATVST 254
Query: 64 NVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + +D+ ++ Y S H + + F
Sbjct: 255 LNLHVFDKPARIDHVFFQQNRLLAREARILFDTPY------ADGRWASDHYGVWVRLQF 307
>gi|293339924|ref|XP_002724703.1| PREDICTED: rCG35247-like isoform 2 [Rattus norvegicus]
gi|293351343|ref|XP_001057412.2| PREDICTED: rCG35247-like isoform 1 [Rattus norvegicus]
Length = 340
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 11/99 (11%), Positives = 24/99 (24%), Gaps = 1/99 (1%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK-SSLDYFVID 79
+ GDFN + D ++ + + T +
Sbjct: 239 DDMLFLGDFNADCKYVKAHDWPSIRLRSSQVFKWLIPDSADTTVGNSDCAYDRIVVSGAH 298
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S + T+ +S H P+ + +
Sbjct: 299 MRKSVKPQSASVHNFQEEFDLDQTQALAISDHFPVEVTF 337
>gi|161016801|ref|NP_034191.3| deoxyribonuclease-1 precursor [Mus musculus]
gi|6166163|sp|P49183|DNAS1_MOUSE RecName: Full=Deoxyribonuclease-1; AltName: Full=Deoxyribonuclease
I; Short=DNase I; Flags: Precursor
gi|3172019|dbj|BAA28622.1| deoxyribonuclease I [Mus musculus]
gi|109730889|gb|AAI15572.1| Deoxyribonuclease I [Mus musculus]
gi|148664804|gb|EDK97220.1| deoxyribonuclease I, isoform CRA_b [Mus musculus]
gi|148664805|gb|EDK97221.1| deoxyribonuclease I, isoform CRA_b [Mus musculus]
gi|148664806|gb|EDK97222.1| deoxyribonuclease I, isoform CRA_b [Mus musculus]
Length = 284
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 5/119 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D K G + GDFN + + + ++ + + +
Sbjct: 165 EIDALYDVYLDVWQKWGLEDIMFMGDFNAGCSYVTSSQWSSIRLRTSPIFQWLIPDS-AD 223
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEYD 119
V + + V + ++ NS + + +S H P+ +
Sbjct: 224 TTVTSTHCAYDRIVVAGALLQAAVVPNSAVPFDFQAEYGLSNQLAEAISDHYPVEVTLR 282
>gi|330957166|gb|EGH57426.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. maculicola str. ES4326]
Length = 291
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 22/113 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N N + + L + PQ + + + +
Sbjct: 186 AYIRELIGGYRHQVLMGDMNTHANDLLEHSPL------RDLGLLAPQIEATFPSWRPKR- 238
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+ + ++ +S H P+ +E
Sbjct: 239 ----------CLDHILLSPTLTLERVQVLAQP-----ISDHLPVAVEIRLPAS 276
>gi|15928480|gb|AAH14718.1| Deoxyribonuclease I [Mus musculus]
Length = 284
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 5/119 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D K G + GDFN + + + ++ + + +
Sbjct: 165 EIDALYDVYLDVWQKWGLEDIMFMGDFNAGCSYVTSSQWSSIRLRTSPIFQWLIPDS-AD 223
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEYD 119
V + + V + ++ NS + + +S H P+ +
Sbjct: 224 TTVTSTHCAYDRIVVAGALLQAAVVPNSAVPFDFQAEYRLSNQLAEAISDHYPVEVTLR 282
>gi|227506363|ref|ZP_03936412.1| endonuclease/exonuclease/phosphatase [Corynebacterium striatum ATCC
6940]
gi|227197014|gb|EEI77062.1| endonuclease/exonuclease/phosphatase [Corynebacterium striatum ATCC
6940]
Length = 940
Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 34/138 (24%), Gaps = 20/138 (14%)
Query: 1 MLSQQGEW-LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+ Q E L+ A Q + GD N + G +
Sbjct: 730 VRKAQAEAVLEHLAKQPDWQDKATFVMGDLNTYTHGDAI-----DVFRDSGYTVPAEDYH 784
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--------------QSDLDTRR 105
SLD+ + + + D ++ D D
Sbjct: 785 ADASYQFSGLLGSLDHVLANEVVSGKVTDAQVWNINADEPVAFEYSRRNYNIVDFYDDSP 844
Query: 106 SKLSTHCPLTIEYDFEKG 123
+ S H P+ + + +
Sbjct: 845 FRASDHDPVKVGFSLGEA 862
>gi|294506837|ref|YP_003570895.1| hypothetical protein SRM_01022 [Salinibacter ruber M8]
gi|294343165|emb|CBH23943.1| conserved hypothetical protein [Salinibacter ruber M8]
Length = 445
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 28/105 (26%), Gaps = 4/105 (3%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST-CNVIKRNKSSLDY 75
+ PF++ GD N + + + + + + S + D
Sbjct: 336 LHDDAPFLVMGDLNADPDDASIFRNAIRHLIGHERVDGGVVPEASPARQADYPDLDPDDT 395
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSD---LDTRRSKLSTHCPLTIE 117
L + ++ +S H P+ ++
Sbjct: 396 SRWGARIDYVLPAATVAVDDAGVWRPAPARVPDVPVSDHFPVWVD 440
>gi|255540403|ref|XP_002511266.1| ap endonuclease, putative [Ricinus communis]
gi|223550381|gb|EEF51868.1| ap endonuclease, putative [Ricinus communis]
Length = 326
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 14/138 (10%), Positives = 30/138 (21%), Gaps = 38/138 (27%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFW----------------------------------Q 44
+ P + GD N I + + +
Sbjct: 179 SDKPLIWCGDLNVSHEEIDVSHPEFFIAAKQNGYVPPNKEDCGQPGFTLNERKRFGSILR 238
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS----D 100
+ +EK+ Y F++
Sbjct: 239 EGKLIDAYRFLHKEKDMERGFSWSGNPIGKYRGKRMRIDYFIVSEKLKGRIISCEMHGQG 298
Query: 101 LDTRRSKLSTHCPLTIEY 118
++ + S HCP+++E
Sbjct: 299 IELQGFYGSDHCPVSLEL 316
>gi|325955052|ref|YP_004238712.1| endonuclease/exonuclease/phosphatase [Weeksella virosa DSM 16922]
gi|323437670|gb|ADX68134.1| Endonuclease/exonuclease/phosphatase [Weeksella virosa DSM 16922]
Length = 343
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 29/121 (23%), Gaps = 21/121 (17%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
M +Q + + + K+ P ++ D N S L F Q +
Sbjct: 244 MHEKQLKEIMPYI---TKSPYPVLVGCDLNATPASYEYQQ------LNAYLYDSFLQVGK 294
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ F + K S H P+ ++Y
Sbjct: 295 GNATTFHGFR-------FPIRIDYLFHSKEFIPIDGKIIR-----KKFSDHYPVIVQYQL 342
Query: 121 E 121
Sbjct: 343 P 343
>gi|164657069|ref|XP_001729661.1| hypothetical protein MGL_3205 [Malassezia globosa CBS 7966]
gi|159103554|gb|EDP42447.1| hypothetical protein MGL_3205 [Malassezia globosa CBS 7966]
Length = 317
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 29/132 (21%), Gaps = 23/132 (17%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD-- 49
L++ I G ++ GD N + F + P
Sbjct: 6 ALEERVRSLINEGRHVIVVGDMNVVASPRDHCESARVPAAEFSAHPARQWFQAILAPQGP 65
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ F E++ L+ +
Sbjct: 66 LMDMTRHFFPERDRM-YTCWNTLIDARASNYGTRLDYTLVTQGLEPWIQHADIQP--QVH 122
Query: 108 LSTHCPLTIEYD 119
S HCP+ ++
Sbjct: 123 GSDHCPIYLDLR 134
>gi|229691|pdb|1ATN|D Chain D, Atomic Structure Of The Actin:dnase I Complex
Length = 260
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 4/110 (3%)
Query: 12 WADQKIKTGIP-FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ D + K + ++ GDFN + + + ++ + + N
Sbjct: 151 YLDVQQKWHLNDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLIPDS-ADTTATSTNC 209
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
+ V ++ ++ S + + + + L S H P+ +
Sbjct: 210 AYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTL 259
>gi|118922|sp|P11937|DNAS1_SHEEP RecName: Full=Deoxyribonuclease-1; AltName: Full=Deoxyribonuclease
I; Short=DNase I
Length = 260
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 35/110 (31%), Gaps = 4/110 (3%)
Query: 12 WADQKIKTGIP-FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ D + K + ++ GDFN + + + ++ + + N
Sbjct: 151 YLDVQQKWDLNDIMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLIPDS-ADTTATSTNC 209
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
+ V ++ ++ S + + + L S H P+ +
Sbjct: 210 AYDRIVVAGSLLQSSVVGPSAVPFDFQAAYGLSNEMALAISDHYPVEVTL 259
>gi|291515221|emb|CBK64431.1| Metal-dependent hydrolase [Alistipes shahii WAL 8301]
Length = 306
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 34/119 (28%), Gaps = 9/119 (7%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ E ++ P V+ DFN+ ++S +K D + +++
Sbjct: 197 QKSMELIEAKIRSLNPDNQPTVLTADFNKMLDSPIFDGV--KKFMADARTTAPVTDNKAS 254
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
N + + + + +S H P+ +F+
Sbjct: 255 FNNFGGATNY-------PRIDHIFSSGFTPLRFATVDQRYEKVPYISDHYPIAAVLEFK 306
>gi|261879847|ref|ZP_06006274.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
bergensis DSM 17361]
gi|270333506|gb|EFA44292.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
bergensis DSM 17361]
Length = 321
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 32/133 (24%), Gaps = 17/133 (12%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L D ++ GDFN + + R +
Sbjct: 184 ARQLYGAIDSLRALYAQPGIIVMGDFNDYTGNASIQFLLSGGLRDVSAEARGGHGAK-GT 242
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL--------------DTRRSKLS 109
+ SLD+ + D ++ S + + + S
Sbjct: 243 YRYHSDWGSLDHILCDEHTAACVVKCSINDAPFLLENEQKYGGVKPRRTYLGPRYLGGFS 302
Query: 110 THCPLTIEYDFEK 122
H PL +D K
Sbjct: 303 DHLPLVAVFDLGK 315
>gi|259503288|ref|ZP_05746190.1| exodeoxyribonuclease [Lactobacillus antri DSM 16041]
gi|259168743|gb|EEW53238.1| exodeoxyribonuclease [Lactobacillus antri DSM 16041]
Length = 275
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDGL 51
+ + + + P + +GDFN I
Sbjct: 150 RDYLHE-LDQQKPVIASGDFNVAHEEIDLAHPANNHHSAGFTDEERTHFGKLLDAGFTDS 208
Query: 52 LIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ + +R +S +LI + + + +D+ +
Sbjct: 209 FRFLHPDQAGAYSWWAQRVLTSKQN-NSGWRIDYWLISDRLADRVSSSTMIDSGERR--D 265
Query: 111 HCPLTIEYDF 120
H P+ +E D
Sbjct: 266 HTPIMLEIDL 275
>gi|229551285|ref|ZP_04440010.1| endonuclease/exonuclease/phosphatase [Lactobacillus rhamnosus
LMS2-1]
gi|229315244|gb|EEN81217.1| endonuclease/exonuclease/phosphatase [Lactobacillus rhamnosus
LMS2-1]
Length = 351
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 42/133 (31%), Gaps = 18/133 (13%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ ++ L K+ + + G ++AGD+N ++ + +D + + +
Sbjct: 222 QQAQFAKLFKYINHAYQQGNYVMVAGDYNHRLLKNTAEIFHTKDLDETWTHLFPKSKLPA 281
Query: 62 TCN-------------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
V ++ +++ + S +
Sbjct: 282 GFYIPTMGLAAAKVPSVRALDQPYKPGKSFVTLIDGYILSPNIKAESVHVVST---GFQY 338
Query: 109 STHCPLTIEYDFE 121
S H P+ +++ +
Sbjct: 339 SDHNPVVLKFQLK 351
>gi|218462948|ref|ZP_03503039.1| putative phosphatase protein [Rhizobium etli Kim 5]
Length = 288
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 31/139 (22%), Gaps = 28/139 (20%)
Query: 4 QQGEWLKKWADQKIKTG-----------------IPFVIAGDFNRKINSIGDTDDF-WQK 45
+Q ++L + ++ G +VI GDFN + S
Sbjct: 152 RQLQFLNAHINAFVQEGGSLTGAAEFDLPEPPLPEDYVIMGDFNMEPESPEYCALAGAAG 211
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLD----YFVIDRDNKNFLIDNSF--SIVSYDQS 99
+ R +S + + S
Sbjct: 212 GYYGRVARIGTPVDAFATLEAYRPESYSWMDPEDHGKRMHLDYCFVSCGLVSRLKSARID 271
Query: 100 DLDTRRSKLSTHCPLTIEY 118
S H PL +E
Sbjct: 272 TQSVG----SDHFPLWVEI 286
>gi|297194844|ref|ZP_06912242.1| endonuclease/exonuclease/phosphatase [Streptomyces
pristinaespiralis ATCC 25486]
gi|197720692|gb|EDY64600.1| endonuclease/exonuclease/phosphatase [Streptomyces
pristinaespiralis ATCC 25486]
Length = 247
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 12/118 (10%), Positives = 24/118 (20%), Gaps = 16/118 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L ++AGD N + + D + + +
Sbjct: 142 QAGLLLDRLKAMDVPHA--IVAGDINERPGGRAFGRLAGELQDCWAVAPWGGEHTST--- 196
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-STHCPLTIEYDFE 121
+ ++ DL + S H P+
Sbjct: 197 ----------AAGPHQRIDAVFATEGVEVLGCGVPDLPPADLRAASDHLPVLAALRIP 244
>gi|115374765|ref|ZP_01462041.1| endonuclease/exonuclease/phosphatase family [Stigmatella aurantiaca
DW4/3-1]
gi|115368242|gb|EAU67201.1| endonuclease/exonuclease/phosphatase family [Stigmatella aurantiaca
DW4/3-1]
Length = 327
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 10/122 (8%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ--EKES 61
+ L + G PFV+ GDFN S ++ + + L + +
Sbjct: 204 HEARKLVALLTEH-AQGEPFVVTGDFNSPPAS-----PVFRYLCEEAQLTCAQAIVGQIN 257
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + D+ + + D+ +R LS H PL +
Sbjct: 258 PSAIRGFPTAGFMHLRMHLDHLFSGSGVRWLDMEETRPFGDVGSRFHGLSDHMPLIARFT 317
Query: 120 FE 121
E
Sbjct: 318 LE 319
>gi|62085792|gb|AAX63287.1| DNA lyase [Cordyceps brongniartii]
Length = 579
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 34/156 (21%), Gaps = 43/156 (27%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFW 43
+Q E L I G V+AGD N + + ++
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQVVLAGDLNIIRSEMDSSNIAESLRKEGISMNEWQSMPTR 202
Query: 44 QKMDP--------------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ ++ + F + K + +
Sbjct: 203 RILNQLLFEATVIGDRDDDRECAVLWDICRCFHPTRLGMHTC-WDTKRNTRPANVGSPID 261
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 262 YILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|301167117|emb|CBW26696.1| hypothetical protein BMS_1876 [Bacteriovorax marinus SJ]
Length = 254
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 14/123 (11%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK--- 67
K+ ++ +VI GDFN + + F + + L+ + S+
Sbjct: 132 KYLKSQLSPKNAYVIMGDFNTTQYFHSEGNYFHKFIRDAKLIASSSEIDCSSYWWGGIND 191
Query: 68 --RNKSSLDYF-------VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPLTI 116
S LD+ ++ S + +S +S HCP+
Sbjct: 192 GLYYPSLLDHILVTKELVGNFNRIDFTNTEHCAQNTCQIASLQELGQSYNSVSDHCPIRA 251
Query: 117 EYD 119
E
Sbjct: 252 ELR 254
>gi|289671214|ref|ZP_06492289.1| endonuclease/exonuclease/phosphatase family protein [Xanthomonas
campestris pv. musacearum NCPPB4381]
Length = 303
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 25/118 (21%), Gaps = 6/118 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L + P VIAGD N +++ + + + S
Sbjct: 181 KRQVTDLLDFVASN-SEQAPVVIAGDLNTAADTLD-----LEALRKGYGDSYGSVHRNSD 234
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V N D S H + +
Sbjct: 235 ATVSTLNMQVFDKPARIDHVFFQQNRLLAREARILFDTPYAEGRWASDHYGVWVRLQL 292
>gi|241206881|ref|YP_002977977.1| endonuclease/exonuclease/phosphatase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240860771|gb|ACS58438.1| Endonuclease/exonuclease/phosphatase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 288
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 37/140 (26%), Gaps = 30/140 (21%)
Query: 4 QQGEWLKKWADQKIKTG-----------------IPFVIAGDFNRKINSIGD------TD 40
+Q E+L + ++ G +VI GDFN + S
Sbjct: 152 RQLEFLNAHINAFVQEGGSLTGGGEFDLPEPPLPEDYVIMGDFNMEPESPEYCALAGAGG 211
Query: 41 DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQ 98
++ ++ G + E+ D+ + + S
Sbjct: 212 GYYGRVARIGTPVDAFAALEAYSPESYSWMDPEDH-GKRMHLDYCFVSCGLQSRLKSARI 270
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
S H PL +E
Sbjct: 271 DTQSV----ASDHFPLWVEI 286
>gi|268318601|ref|YP_003292257.1| exodeoxyribonuclease [Lactobacillus johnsonii FI9785]
gi|262396976|emb|CAX65990.1| exodeoxyribonuclease [Lactobacillus johnsonii FI9785]
Length = 275
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDGLLIRFP 56
QK+ P + +GD+N I + +
Sbjct: 154 QKLDKSKPVIASGDYNVAHTPIDLKHPENNHHNAGFTDEERQDFDKLLKLGFTDTFRKVH 213
Query: 57 QE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ +R ++S +++ + + +DT K HCP+
Sbjct: 214 GNIEGVYSWWAQRVRTSKAN-NSGWRIDYYIVSDRIADQVTKSEMIDTGDRK--DHCPIM 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 LEINL 275
>gi|315503641|ref|YP_004082528.1| endonuclease/exonuclease/phosphatase [Micromonospora sp. L5]
gi|315410260|gb|ADU08377.1| Endonuclease/exonuclease/phosphatase [Micromonospora sp. L5]
Length = 1089
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 11/134 (8%), Positives = 25/134 (18%), Gaps = 17/134 (12%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGD----TDDF---------WQKMD 47
+Q + + V GD N + +
Sbjct: 844 REQAAYGAAIVQAVEASDPNARVVYGGDLNVFPRPDDPIATAQNPTPSDQLAPLYEAGLH 903
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN--KNFLIDNSFSIVSYDQSDLDTRR 105
+ + +LD ++ + + Y +
Sbjct: 904 NLWDDLVKDAPASAYSYTFSGQAQTLDNLFVNDPMHDDLVQVRTAHINADYPTDAPELGE 963
Query: 106 SKLSTHCPLTIEYD 119
S H P +
Sbjct: 964 RGASDHDPQVARFR 977
>gi|281491447|ref|YP_003353427.1| endonuclease/exonuclease/phosphatase family protein [Lactococcus
lactis subsp. lactis KF147]
gi|281375165|gb|ADA64678.1| Endonuclease/exonuclease/phosphatase family protein [Lactococcus
lactis subsp. lactis KF147]
Length = 352
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 7/123 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ---EK 59
QQ L + + G + D+N + + W K P L + +
Sbjct: 232 KQQLLTLFDEMKKYVSKGDYVICGADYNHALAGKAHPELTWMKEFPTENLTKGMRVVAPT 291
Query: 60 ESTCNVIKRNKSSLDY-FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ FL+ N+ + D + K S H P+ +++
Sbjct: 292 NAPTVRSLDYAYDKKNPKNTFGIIDGFLVSNNIKDLKIQTID---NQFKSSDHQPVVMDF 348
Query: 119 DFE 121
E
Sbjct: 349 SLE 351
>gi|208222|gb|AAA72974.1| pancreatic DNAase I [synthetic construct]
Length = 261
Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 4/110 (3%)
Query: 12 WADQKIKTGIP-FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ D + K + ++ GDFN + + + ++ + + N
Sbjct: 152 YLDVQQKWHLNDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLIPDS-ADTTATSTNC 210
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
+ V ++ ++ S + + + + L S H P+ +
Sbjct: 211 AYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTL 260
>gi|325510164|gb|ADZ21800.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
Length = 374
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 10/128 (7%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKIN--SIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
E L + ++ G ++ GD N + + ++ +
Sbjct: 104 IEQLAAYINEN-SKGNAVIVMGDTNTRYTRQQDNIKQALVDACNLKDAWVKLDRNGVYPS 162
Query: 64 NV----IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL---DTRRSKLSTHCPLTI 116
+ N++S ++ V+D+ + +SY D D +LS H P+
Sbjct: 163 TGEPLMDETNRNSANFEVVDKILFRGSKSLTLDALSYRLEDTKFVDKSGKQLSDHYPIIA 222
Query: 117 EYDFEKGN 124
++++ K N
Sbjct: 223 QFNYTKTN 230
>gi|323356483|ref|YP_004222879.1| metal-dependent hydrolase [Microbacterium testaceum StLB037]
gi|323272854|dbj|BAJ72999.1| metal-dependent hydrolase [Microbacterium testaceum StLB037]
Length = 278
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 24/109 (22%), Gaps = 7/109 (6%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
WL + P + D N + S F + D +
Sbjct: 166 WLHDLVAAR---ERPLLFTADVNAHVRSAELAGMFADGLLVDTWAYAPARRTAE----WG 218
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ V R L + + T S H P+
Sbjct: 219 TFNNYASPRVGARRIDALLATPDVGVRAVGIDPRPTGTQWPSDHLPVQA 267
>gi|322392394|ref|ZP_08065855.1| exodeoxyribonuclease [Streptococcus peroris ATCC 700780]
gi|321144929|gb|EFX40329.1| exodeoxyribonuclease [Streptococcus peroris ATCC 700780]
Length = 275
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEK 59
++ P + GD+N I + + + G F
Sbjct: 154 AELDKKKPVLATGDYNVAHKEIDLANPASNHRSPGFTDEEREGFTNLLAKGFTDTFRHVH 213
Query: 60 ES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+R+K+S +L N + +D+ + H P+
Sbjct: 214 GDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGPRQ--DHTPIV 270
Query: 116 IEYDF 120
+E
Sbjct: 271 LEIKL 275
>gi|284030291|ref|YP_003380222.1| endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
gi|283809584|gb|ADB31423.1| Endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
Length = 254
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 29/117 (24%), Gaps = 7/117 (5%)
Query: 5 QGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q L + A D P ++AGD N S + + ++
Sbjct: 144 QTRLLAELATDPAYDGDAPVIVAGDLNAGPTSRVLG-PLYDVLRDAWTGD-----PDAIT 197
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + + + + S H + + +
Sbjct: 198 SPDEAGPDLRDQRIDHIFYRPGTFSQEVEVTQAQLAGDPVDGITPSDHQAVVCDLRW 254
>gi|22135535|gb|AAM93248.1| deoxyribonuclease I precursor [Bos taurus]
Length = 282
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 4/110 (3%)
Query: 12 WADQKIKTGIP-FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ D + K + ++ GDFN + + + ++ + + N
Sbjct: 173 YLDVQQKWHLNDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWVIPDS-ADTTATSTNC 231
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
+ V ++ ++ S + + + + L S H P+ +
Sbjct: 232 AYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTL 281
>gi|113866485|ref|YP_724974.1| metal-dependent hydrolase [Ralstonia eutropha H16]
gi|113525261|emb|CAJ91606.1| Metal-dependent hydrolase [Ralstonia eutropha H16]
Length = 260
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 15/115 (13%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E L + + G+P VIAGDFN + Q + G +
Sbjct: 143 RQAEALVERVRTVVPAGMPLVIAGDFNDW-----NHRLDAQICNTLGAVEASHARGA--- 194
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + + + ++ ++ +R S H PL E
Sbjct: 195 ----RLHTFPSHMPWWQLDRIYVRGYEIERAHALTGRDWAQR---SDHVPLVAEL 242
>gi|21903354|gb|AAG28792.2| epithelial lens deoxyribonuclease I [Bos taurus]
Length = 272
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 4/110 (3%)
Query: 12 WADQKIKTGIP-FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ D + K + ++ GDFN + + + ++ + + N
Sbjct: 163 YLDVQQKWHLNDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLIPDS-ADTTATSTNC 221
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
+ V ++ ++ S + + + + L S H P+ +
Sbjct: 222 AYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTL 271
>gi|493974|pdb|1DNK|A Chain A, The X-Ray Structure Of The Dnase I-D(Ggtatacc)2 Complex At
2.3 Angstroms Resolution
gi|494766|pdb|2DNJ|A Chain A, Dnase I-Induced Dna Conformation. 2 Angstroms Structure Of
A Dnase I-Octamer Complex
gi|82407663|pdb|2A3Z|B Chain B, Ternary Complex Of The Wh2 Domain Of Wasp With Actin-Dnase
I
gi|82407666|pdb|2A40|B Chain B, Ternary Complex Of The Wh2 Domain Of Wave With Actin-Dnase
I
gi|82407669|pdb|2A40|E Chain E, Ternary Complex Of The Wh2 Domain Of Wave With Actin-Dnase
I
gi|82407672|pdb|2A41|B Chain B, Ternary Complex Of The Wh2 Domain Of Wip With Actin-Dnase
I
gi|82407675|pdb|2A42|B Chain B, Actin-Dnase I Complex
gi|116666965|pdb|2D1K|B Chain B, Ternary Complex Of The Wh2 Domain Of Mim With Actin-Dnase
I
gi|157836798|pdb|3DNI|A Chain A, Crystallographic Refinement And Structure Of Dnase I At 2
Angstroms Resolution
gi|170785263|pdb|3CJC|D Chain D, Actin Dimer Cross-Linked By V. Cholerae Martx Toxin And
Complexed With Dnase I And Gelsolin-Segment 1
gi|240684|gb|AAB20621.1| deoxyribonuclease I, DNase I [cattle, pancreas, Peptide, 260 aa]
gi|248467|gb|AAB22021.1| deoxyribonuclease A [cattle, pancreas, Peptide, 260 aa]
Length = 260
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 36/110 (32%), Gaps = 4/110 (3%)
Query: 12 WADQKIKTGIP-FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ D + K + ++ GDFN + + + ++ + + N
Sbjct: 151 YLDVQQKWHLNDVMLMGDFNADCSYVTSSQWSSIRLRTSSTFQWLIPDS-ADTTATSTNC 209
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
+ V ++ ++ S + + + + L S H P+ +
Sbjct: 210 AYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTL 259
>gi|218681503|ref|ZP_03529390.1| hypothetical protein RetlC8_22861 [Rhizobium etli CIAT 894]
Length = 242
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 26/119 (21%), Gaps = 16/119 (13%)
Query: 4 QQGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W + +P ++ GDFN S D +
Sbjct: 137 RQMTTLLNAGWLHGSVGESLPAILCGDFNAIPASATYRLAARSLKDAQLAGSTAARATFP 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + S H PL E F
Sbjct: 197 ARYP-------------LMRIDHIFVTDDLVVKRSAVM-ESRLTRVASDHLPLLAEIGF 241
>gi|84874692|ref|NP_001033721.1| deoxyribonuclease-1-like 1 precursor [Sus scrofa]
gi|91206584|sp|Q2QDF0|DNSL1_PIG RecName: Full=Deoxyribonuclease-1-like 1; AltName: Full=DNase X;
AltName: Full=Deoxyribonuclease I-like 1; Short=DNase
I-like 1; Flags: Precursor
gi|73921490|gb|AAZ94275.1| DNase X [Sus scrofa]
Length = 315
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 11/104 (10%), Positives = 27/104 (25%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ ++ GDFN S+ + + T + +
Sbjct: 181 QRWQSEDVILLGDFNADCASLTKKRLDELVLRTQAGFHWAVADGVDTTVRASTHCTYDRI 240
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++ L + + +S H P+ +E
Sbjct: 241 VLHGERLQSLLRNAGAFDFPQSFGLTEEEALNISDHYPVEVELS 284
>gi|157158045|ref|YP_001461980.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli E24377A]
gi|300822925|ref|ZP_07103060.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 119-7]
gi|300922814|ref|ZP_07138900.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 182-1]
gi|301327982|ref|ZP_07221147.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 78-1]
gi|331667154|ref|ZP_08368019.1| putative cytoplasmic protein [Escherichia coli TA271]
gi|331676525|ref|ZP_08377221.1| putative cytoplasmic protein [Escherichia coli H591]
gi|157080075|gb|ABV19783.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli E24377A]
gi|300420846|gb|EFK04157.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 182-1]
gi|300524466|gb|EFK45535.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 119-7]
gi|300845547|gb|EFK73307.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 78-1]
gi|320198979|gb|EFW73576.1| Endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli EC4100B]
gi|331065510|gb|EGI37403.1| putative cytoplasmic protein [Escherichia coli TA271]
gi|331075214|gb|EGI46512.1| putative cytoplasmic protein [Escherichia coli H591]
Length = 253
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V R + + N+ S + LS H PL+ E
Sbjct: 197 FTRVHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|218671527|ref|ZP_03521197.1| putative metal-dependent hydrolase protein [Rhizobium etli GR56]
Length = 170
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 28/119 (23%), Gaps = 16/119 (13%)
Query: 4 QQGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W +P ++ GDFN +S D +
Sbjct: 65 RQMTTLLNAGWLRGAANEPLPCILCGDFNAIPSSATYRLAARSLKDAQLAGKAAAKATFP 124
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + + S H PL E F
Sbjct: 125 SLYP-------------LMRLDHIFVTDDLVVKKATVL-QNRLTRIASDHLPLFAEIGF 169
>gi|119120921|ref|NP_001073156.1| deoxyribonuclease-1-like 2 [Monodelphis domestica]
gi|82659555|gb|ABB88875.1| deoxyribonuclease 1-like 2 [Monodelphis domestica]
Length = 288
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 3/100 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+ GDFN + D ++ + + + V + +
Sbjct: 187 DDILFLGDFNADCKYVRPNDWAKIRLRTSEIFKWLIPDD-TDTTVGNSDCAYDRIVACGS 245
Query: 81 DNKNFLIDNSFSIVSYD--QSDLDTRRSKLSTHCPLTIEY 118
+ + NS + ++ S T +S H P+ +
Sbjct: 246 HLRKCIAPNSAMVNNFQKSFSLDQTAALAISDHFPVEVTL 285
>gi|116628715|ref|YP_813887.1| exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|282852356|ref|ZP_06261698.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|311111551|ref|ZP_07712948.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
gi|116094297|gb|ABJ59449.1| Exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|282556098|gb|EFB61718.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|311066705|gb|EFQ47045.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
Length = 275
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLIRF 55
QK+ P + +GD+N I + D
Sbjct: 154 QKLDQNKPVIASGDYNVAHTPIDLKHPESNHHNAGFTDEERQDFDKLLKLGFTDTFRKVH 213
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ +R ++S +++ N + LDT K HCP+
Sbjct: 214 GNVEGVYSWWAQRVRTSKAN-NSGWRIDYYIVSNRIADQVTKSEMLDTGERK--DHCPIM 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 LEINL 275
>gi|330901521|gb|EGH32940.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 138
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 22/113 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N N + + L + PQ + + + +
Sbjct: 33 AYIRELIGGYRHQVLMGDMNTHANDLLEHSPL------RDLGLLAPQIEATFPSWRPQR- 85
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+ + ++ +S H P+ +E
Sbjct: 86 ----------CLDHILLSPTLTLERVQVLAQP-----ISDHLPVAVEIRLPDS 123
>gi|225010308|ref|ZP_03700780.1| Endonuclease/exonuclease/phosphatase [Flavobacteria bacterium
MS024-3C]
gi|225005787|gb|EEG43737.1| Endonuclease/exonuclease/phosphatase [Flavobacteria bacterium
MS024-3C]
Length = 279
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 8/116 (6%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ + + T FV+ GDFN N + T DP + E
Sbjct: 172 SALLIIEKIKSLVSTESVFVLTGDFNASPNELPITHLKNAFRDPLEYIELSGPEG----- 226
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +DR + S+ +S H P+ + +
Sbjct: 227 ---TFNAFNLQAPLDRRIDYIFFQGLTPLSYAHLSEKRANGRWISDHLPVKFDLAY 279
>gi|156365697|ref|XP_001626780.1| predicted protein [Nematostella vectensis]
gi|156213669|gb|EDO34680.1| predicted protein [Nematostella vectensis]
Length = 327
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 30/123 (24%), Gaps = 20/123 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN--VI 66
LK + + + ++ GDFN + +Q M+ + ++
Sbjct: 212 LKDFMENEQAE---VLVCGDFNAEPTE-----PVYQVMEDGVHGVPLRSAYKTISRSEPD 263
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSY---------DQSDLDTRRSKLSTHCPLTIE 117
+ + Y + L S H L +
Sbjct: 264 YTTWKIRPNGEVKHTIDYVWHSEGLKVDGYLHVADTASMNVDRLPCMA-YPSDHISLVFD 322
Query: 118 YDF 120
+ F
Sbjct: 323 FSF 325
>gi|322517552|ref|ZP_08070421.1| RgfB protein [Streptococcus vestibularis ATCC 49124]
gi|322123812|gb|EFX95386.1| RgfB protein [Streptococcus vestibularis ATCC 49124]
Length = 271
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 25/102 (24%), Gaps = 2/102 (1%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
G P ++AGDFN G + + S V
Sbjct: 172 GKPLILAGDFNNPAGREGYQAILASPLKLQDSFQVAQETNGSYT-VGPGIDGWKGNE-EP 229
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+++ + +S H L E F+
Sbjct: 230 LRIDYVFASQEWAVNHLSVIFDGNNQPLVSDHYGLEAELTFK 271
>gi|261880007|ref|ZP_06006434.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270333323|gb|EFA44109.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 341
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 8/113 (7%)
Query: 7 EWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ + W K G P +AGDFN K N + +
Sbjct: 151 DQITSWIISFAKRAGTPVFVAGDFNAKPNYRAMRTFTNNGF-------KILNDVNQYTYP 203
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+D + + + S V+ +S+ S H P+ ++
Sbjct: 204 SDNPTGCIDMILFYDSAEEEKYEVEDSGVAPSGGVNIKSQSETSDHLPVFVQL 256
>gi|254506370|ref|ZP_05118513.1| endonuclease/exonuclease/phosphatase [Vibrio parahaemolyticus 16]
gi|219550850|gb|EED27832.1| endonuclease/exonuclease/phosphatase [Vibrio parahaemolyticus 16]
Length = 442
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 11/125 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I G V +GDFN + GD +
Sbjct: 314 QRQFKQMRAMAKSLNIPNGETVVYSGDFNVNKLKFPGDYQQMIANLSAIEPRYSGYTAST 373
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ +L ++ N + + S++ + +D + LS H
Sbjct: 374 FDPRINNFAGEALSGGENVEYLDYVMVSNEYGVKSFNDNRVDVPRSTAESLWKHYNLSDH 433
Query: 112 CPLTI 116
P++
Sbjct: 434 FPVSA 438
>gi|153832474|ref|ZP_01985141.1| endonuclease/exonuclease/phosphatase [Vibrio harveyi HY01]
gi|148871269|gb|EDL70141.1| endonuclease/exonuclease/phosphatase [Vibrio harveyi HY01]
Length = 442
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 11/127 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I V +GDFN + GD +
Sbjct: 314 QRQFKQMRAMAKSLNIPANETVVYSGDFNVNKLKFPGDYQQMIANLSAVEPEYSGYTAST 373
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ +L ++ + + S++ + +D + LS H
Sbjct: 374 FDPRINNFAGKALSGGDNVEYLDYVMVSSEYGAKSFNDNRVDVPRSTAASLWKHYNLSDH 433
Query: 112 CPLTIEY 118
P++
Sbjct: 434 FPVSTVL 440
>gi|327541576|gb|EGF28107.1| secreted protein containing Endonuclease/exonuclease/phosphatase
domain [Rhodopirellula baltica WH47]
Length = 284
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 37/118 (31%), Gaps = 6/118 (5%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
++ + + + +G ++ GD N ++ +D + + +
Sbjct: 171 KEIRAMIESMKSDLDSGRSMLLIGDLNHSPDTDEYKLW----IDAGWIDTFAKVGEGNGF 226
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNS--FSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N +V + S ++ ++ D + LS H P +D
Sbjct: 227 TIKADNPEWRIDYVFATGPIAKRVSESRPLFEGAFRVNNEDEKSYALSDHLPQFAVFD 284
>gi|262283107|ref|ZP_06060874.1| exodeoxyribonuclease III [Streptococcus sp. 2_1_36FAA]
gi|262261359|gb|EEY80058.1| exodeoxyribonuclease III [Streptococcus sp. 2_1_36FAA]
Length = 275
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEK 59
+ P + GD+N I + + + G F
Sbjct: 154 ATLDQQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLH 213
Query: 60 ES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+R+K+S +L N + +D+ + H P+
Sbjct: 214 GDIPNQYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--DHTPIV 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 MEIEL 275
>gi|284034341|ref|YP_003384272.1| endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
gi|283813634|gb|ADB35473.1| Endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
Length = 272
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 11/117 (9%), Positives = 29/117 (24%), Gaps = 21/117 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + + + + P ++ GD N + +++
Sbjct: 176 EQAQKV---VEVLAGSKQPTLLVGDLNAAATTPEIQKLTAIW-------------RDTWP 219
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V +++ L + S + S H P+ +
Sbjct: 220 QVGVGPGNTISAENPTARIDYLLHSAALRPTSASVP-----ATLASDHLPVVATFTL 271
>gi|184155957|ref|YP_001844297.1| hypothetical protein LAF_1481 [Lactobacillus fermentum IFO 3956]
gi|183227301|dbj|BAG27817.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
Length = 367
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 16/133 (12%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSI-----------GDT-DDFWQKMDP 48
M Q + L ++ G ++ GD+N + D Q M
Sbjct: 239 MRKAQMKLLNAVIERAYLDGNYVIVGGDYNHALGKDMLTHFASQEKVPDWVSVLDQSMVA 298
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
G + Q +E+ V + + FL+ N+ + + + +
Sbjct: 299 KGFTMVKAQNRETVPTVRSTDLAYRSGVNYLTVCDGFLVSNNVTATATNINTNFDYA--- 355
Query: 109 STHCPLTIEYDFE 121
H P+ + + +
Sbjct: 356 -DHNPVKLTFILK 367
>gi|167648820|ref|YP_001686483.1| endonuclease/exonuclease/phosphatase [Caulobacter sp. K31]
gi|167351250|gb|ABZ73985.1| Endonuclease/exonuclease/phosphatase [Caulobacter sp. K31]
Length = 358
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 31/117 (26%), Gaps = 1/117 (0%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP-QEKESTC 63
Q E L ++ G P ++ GDFN + + F +
Sbjct: 233 QAEELGRFMGTDRTPGAPLIVGGDFNVMHAPDRFDYVMQRYPFEVVSQVCFQVPDSCDAK 292
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ LD + + + +V T LS H + +
Sbjct: 293 ISADGDAPWLDTQDLIGFKQGDRVGIRPILVEARFDGSATGGPVLSDHDAYEVTFRL 349
>gi|73541781|ref|YP_296301.1| endonuclease/exonuclease/phosphatase [Ralstonia eutropha JMP134]
gi|72119194|gb|AAZ61457.1| Endonuclease/exonuclease/phosphatase [Ralstonia eutropha JMP134]
Length = 284
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 30/134 (22%), Gaps = 19/134 (14%)
Query: 5 QGEWLKKW--------ADQKIKTGIP-----------FVIAGDFNRKINSIGDTDDFWQK 45
Q L+ W P V+ GDFN K + I
Sbjct: 150 QANALRDWHAEACGHALRPGRSESTPGPFTPAVRPTEAVLCGDFNSKPDDIAYRRMLEPF 209
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
D + + + + ++ +
Sbjct: 210 DDDTTPWRDAWMHIHPGQSHAPTCAMYDKEQWPEPPFACDFVFVTENLAERVRRCEVNAA 269
Query: 106 SKLSTHCPLTIEYD 119
+K S H P+ + D
Sbjct: 270 TKDSDHQPIVLSLD 283
>gi|238853021|ref|ZP_04643416.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
gi|238834359|gb|EEQ26601.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
Length = 275
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGLLIRF 55
QK+ P + +GD+N I + D
Sbjct: 154 QKLDQNKPVIASGDYNVAHTPIDLKHPESNHHNAGFTDEERQDFDKLLKLGFTDTFRKVH 213
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ +R ++S +++ N + LDT K HCP+
Sbjct: 214 GNVEGVYSWWAQRVRTSKAN-NSGWRIDYYIVSNRIADQVTKSEMLDTGERK--DHCPIM 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 LEINL 275
>gi|329965398|ref|ZP_08302322.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
fluxus YIT 12057]
gi|328522190|gb|EGF49304.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
fluxus YIT 12057]
Length = 361
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 17/96 (17%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P ++ GDFN +S ++ DG F Y
Sbjct: 279 PVIVCGDFNSLPSSYTYQ--YFSGFLKDG----FRTAGNGYMYTY-------RYGKKMLR 325
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
N +SY + S H P+ +E
Sbjct: 326 IDYIFHSNELEGMSY----YSPTQEFCSDHNPVIME 357
>gi|327269725|ref|XP_003219643.1| PREDICTED: 25-hydroxycholesterol 7-alpha-hydroxylase-like [Anolis
carolinensis]
Length = 929
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 17/128 (13%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF------PQ 57
Q + L+ + +I GDFN ++ I D ++ D +
Sbjct: 94 QFIKELRDQITKSEAEH--IMIFGDFNGVLDPIQDKTRKTKRPKKDDCRRLPGNMLLMKE 151
Query: 58 EKESTCNVIKRNKSSLDYFVI------DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
E N + DY +S S D L + S H
Sbjct: 152 EFHLQDIWRYHNPTKRDYTFYSNRHDSWSRIDMIWASSSLLTNSIDIKILPRDK---SDH 208
Query: 112 CPLTIEYD 119
CP+T+ +
Sbjct: 209 CPITMCLN 216
>gi|294628698|ref|ZP_06707258.1| endonuclease/exonuclease/phosphatase [Streptomyces sp. e14]
gi|292832031|gb|EFF90380.1| endonuclease/exonuclease/phosphatase [Streptomyces sp. e14]
Length = 607
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 31/120 (25%), Gaps = 16/120 (13%)
Query: 5 QGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + +K + GD N S + + E+ +
Sbjct: 498 QATEVNAFVKDILKIQKNADVIALGDMNDFEFSDTAKILEGRGELWSAIKSLPKNERYTY 557
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS---KLSTHCPLTIEYD 119
DY ++ L+ S + + ++S H P + +
Sbjct: 558 -----------DYQGNEQVLDQILVSPSIRRGDFAYDSVHINSEFHDQISDHDPQVLRFR 606
>gi|261324744|ref|ZP_05963941.1| endonuclease/exonuclease/phosphatase [Brucella neotomae 5K33]
gi|261300724|gb|EEY04221.1| endonuclease/exonuclease/phosphatase [Brucella neotomae 5K33]
Length = 358
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 247 QQSEQIEALSEQFRGLSENAILSGDLNAA-----LWSATTKRI--AELAAMTPAPPTGPT 299
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 300 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 348
>gi|256546090|ref|ZP_05473443.1| endonuclease/exonuclease/phosphatase family protein [Anaerococcus
vaginalis ATCC 51170]
gi|256398207|gb|EEU11831.1| endonuclease/exonuclease/phosphatase family protein [Anaerococcus
vaginalis ATCC 51170]
Length = 348
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKIN------SIGDTDDFWQKMDPDGLLIRFPQE 58
Q + + + +++ K G ++ GDFN+++ G + + I+ +
Sbjct: 229 QTKEIINFVNKEYKKGNYVIVGGDFNQELTGNYKELPEGIWNPKILPKELLTENIKLYYD 288
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K +V+ K F+ ++ I + + + S H P+ +E+
Sbjct: 289 KNGETSVVND-KPYTGKDAYLSTIDGFMATDNIKIKT--IKTQEKENFQYSDHNPVVMEF 345
Query: 119 DFE 121
+
Sbjct: 346 VLK 348
>gi|198274048|ref|ZP_03206580.1| hypothetical protein BACPLE_00185 [Bacteroides plebeius DSM 17135]
gi|198273126|gb|EDY97395.1| hypothetical protein BACPLE_00185 [Bacteroides plebeius DSM 17135]
Length = 352
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + ++ +G ++ GDFN S L +E
Sbjct: 255 QADSVAQVISRQ--SGKYLLVCGDFNDSPISYAHHTI-------GKGLTDAYREAGWGPG 305
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + + F ++ + + S H PL
Sbjct: 306 FSYNRN------FLYFRIDHLFVSKGFRVLKCRVDNSIS----ASDHYPLW 346
>gi|167763762|ref|ZP_02435889.1| hypothetical protein BACSTE_02142 [Bacteroides stercoris ATCC
43183]
gi|167697878|gb|EDS14457.1| hypothetical protein BACSTE_02142 [Bacteroides stercoris ATCC
43183]
Length = 374
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 25/111 (22%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + ++ GDFN S Q +D +
Sbjct: 276 QADTIAREIAS--SRHPSVIVCGDFNDTPISYA-HRVIAQNLDD------AFTQSGRGLG 326
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N LI + + S H P+
Sbjct: 327 ISYNQNKFYF------RIDNILISKNLRSYNCTVDRSIRE----SDHYPIW 367
>gi|323344686|ref|ZP_08084910.1| hypothetical protein HMPREF0663_11446 [Prevotella oralis ATCC
33269]
gi|323093956|gb|EFZ36533.1| hypothetical protein HMPREF0663_11446 [Prevotella oralis ATCC
33269]
Length = 270
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 22/118 (18%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L D+ P ++ GD N NS + R + +
Sbjct: 175 EQAAVLTS--DEVKSNTYPTILCGDMNVGPNSDVIKKLL-------TVYDRLDNDSGTY- 224
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + + S D +LS HCP+ +
Sbjct: 225 ------------LGLSKIDFILGTKGKWELKSCKVLDRHLNGKELSDHCPVVSVVKLK 270
>gi|149199822|ref|ZP_01876852.1| hypothetical protein LNTAR_23729 [Lentisphaera araneosa HTCC2155]
gi|149137110|gb|EDM25533.1| hypothetical protein LNTAR_23729 [Lentisphaera araneosa HTCC2155]
Length = 271
Score = 44.1 bits (102), Expect = 0.006, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 22/118 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + L + + +P +I GDFN + G + Q+++ +++
Sbjct: 175 QRQIQMLCNYIQNQAP--LPLIIMGDFNCQYRKNGVLERLAQELNLQVW----NPQEKIV 228
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ LI SY+ S H + E +F
Sbjct: 229 SFPK-----------LGLRLDWILISQEMRFNSYE-----LWDDLASDHLAVRAELEF 270
>gi|224026812|ref|ZP_03645178.1| hypothetical protein BACCOPRO_03569 [Bacteroides coprophilus DSM
18228]
gi|224020048|gb|EEF78046.1| hypothetical protein BACCOPRO_03569 [Bacteroides coprophilus DSM
18228]
Length = 288
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 13/107 (12%), Positives = 24/107 (22%), Gaps = 4/107 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I P V+ GDFN T +++ +
Sbjct: 185 KEIVGDQPAVLTGDFNVSDQWDAYTTITTNSFVLKDAYKIADKQEGVN-YTFHDFG--RE 241
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS-KLSTHCPLTIEYDF 120
+ + + LS H P +F
Sbjct: 242 PIDKREKIDFIFVTPQIKVKDTSIPQESQGETGFLSDHNPQLATLEF 288
>gi|171692387|ref|XP_001911118.1| hypothetical protein [Podospora anserina S mat+]
gi|170946142|emb|CAP72943.1| unnamed protein product [Podospora anserina S mat+]
Length = 294
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 9/126 (7%)
Query: 3 SQQGEWL----KKW-ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ 57
+ + L + W A T +P + GDFN + + Q
Sbjct: 167 EESAKLLLEISRTWTASASRGTQVPAFLGGDFNSTPSDGAYKVLAAPDSGMTDISQLVQQ 226
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR---RSKLSTHCPL 114
+ N S + + + S + S + L R LS H +
Sbjct: 227 DD-RYGNQDITYTSFGEPEETPKRIDFLFVRESQQLTSRNFGILPNRFDDMVYLSDHRAV 285
Query: 115 TIEYDF 120
+ +
Sbjct: 286 VADMEL 291
>gi|310824891|ref|YP_003957249.1| endonuclease/exonuclease/phosphatase family protein [Stigmatella
aurantiaca DW4/3-1]
gi|309397963|gb|ADO75422.1| Endonuclease/exonuclease/phosphatase family protein [Stigmatella
aurantiaca DW4/3-1]
Length = 323
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 10/122 (8%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ--EKES 61
+ L + G PFV+ GDFN S ++ + + L + +
Sbjct: 200 HEARKLVALLTEH-AQGEPFVVTGDFNSPPAS-----PVFRYLCEEAQLTCAQAIVGQIN 253
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + D+ + + D+ +R LS H PL +
Sbjct: 254 PSAIRGFPTAGFMHLRMHLDHLFSGSGVRWLDMEETRPFGDVGSRFHGLSDHMPLIARFT 313
Query: 120 FE 121
E
Sbjct: 314 LE 315
>gi|315047122|ref|XP_003172936.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Arthroderma gypseum
CBS 118893]
gi|311343322|gb|EFR02525.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Arthroderma gypseum
CBS 118893]
Length = 604
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 26/150 (17%), Gaps = 43/150 (28%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------------ 38
L+ IK G ++ GD N +I
Sbjct: 178 LEARVRNLIKMGKRVILTGDLNISPAAIDSAPATERIKKNTETEEEYVSSPARRLFNGLV 237
Query: 39 ---------TDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
D + D P +R + L +
Sbjct: 238 RRVGSTEETHDIEASPVLRDLCREFHPNRTGMYTCWEQRVNA--RPGNYGSRIDYILCSD 295
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 296 DIRPW--FVESNIQEGLMGSDHCPVYASIS 323
>gi|312194345|ref|YP_004014406.1| endonuclease/exonuclease/phosphatase [Frankia sp. EuI1c]
gi|311225681|gb|ADP78536.1| Endonuclease/exonuclease/phosphatase [Frankia sp. EuI1c]
Length = 1037
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 15/139 (10%), Positives = 33/139 (23%), Gaps = 21/139 (15%)
Query: 4 QQGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q L +A Q + GDFN + G + +
Sbjct: 808 HQVTDLSAFATQTAAGLGTNRIFLLGDFNAYTGEDPMQVLYGAGYVDLGSTL----DPAE 863
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------- 107
+ SLD+ + + + + ++ ++
Sbjct: 864 QTYSYNSLEGSLDHVLANPAALSMVTGADVWQINAQEAVAFAYSRYNYNATQLFNGTDPF 923
Query: 108 -LSTHCPLTIEYDFEKGNV 125
S H P+ + +
Sbjct: 924 AASDHDPVVVGLTLPATPL 942
>gi|254495900|ref|ZP_05108809.1| endonuclease/exonuclease/phosphatase family protein [Legionella
drancourtii LLAP12]
gi|254354882|gb|EET13508.1| endonuclease/exonuclease/phosphatase family protein [Legionella
drancourtii LLAP12]
Length = 221
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 14/119 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q L + + + P ++AGDFN N + F + ++ + + +
Sbjct: 117 AEQATALMRRIKEVVPLNEPLLMAGDFNDWRN--VLSQPFAEDLNVEEAFVSLEGQHA-- 172
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
R+ ++ + + V+ Q LS H PL ++
Sbjct: 173 -----RSFPAIRPALCVDRVYFRGMR--VQEVACLQGKPWR---MLSDHLPLYARFELS 221
>gi|242266576|gb|ACS91139.1| APN2 [Microsporum gypseum]
Length = 596
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 26/150 (17%), Gaps = 43/150 (28%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------------ 38
L+ IK G ++ GD N +I
Sbjct: 170 LEARVRNLIKMGKRVILTGDLNISPAAIDSAPATERIKKNTETEEEYVSSPARRLFNGLV 229
Query: 39 ---------TDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
D + D P +R + L +
Sbjct: 230 RRVGSTEETHDIEASPVLRDLCREFHPNRTGMYTCWEQRVNA--RPGNYGSRIDYILCSD 287
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 288 DIRPW--FVESNIQEGLMGSDHCPVYASIS 315
>gi|242266571|gb|ACS91135.1| APN2 [Microsporum gypseum]
Length = 596
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 26/150 (17%), Gaps = 43/150 (28%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------------ 38
L+ IK G ++ GD N +I
Sbjct: 170 LEARVRNLIKMGKRVILTGDLNISPAAIDSAPATERIKKNTETEEEYVSSPARRLFNGLV 229
Query: 39 ---------TDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
D + D P +R + L +
Sbjct: 230 RRVGSTEETHDIEASPVLRDLCREFHPNRTGMYTCWEQRVNA--RPGNYGSRIDYILCSD 287
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 288 DIRPW--FVESNIQEGLMGSDHCPVYASIS 315
>gi|218196725|gb|EEC79152.1| hypothetical protein OsI_19821 [Oryza sativa Indica Group]
Length = 377
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 31/128 (24%), Gaps = 10/128 (7%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL-------I 53
+LS+ +K K +IAGDFN D
Sbjct: 245 LLSR-VTQFEKLISNKFNCKPSVMIAGDFNSTPGDKVYNYLVSANSDSTDEAPIKLRSLY 303
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQSDLDTRRSKLSTH 111
+ N +LDY + + S + S H
Sbjct: 304 AANGGEPEFTNCTPGFTGTLDYIFLSDGSSVKPTSLLRIPRGDSAEVQGGLPNFHHPSDH 363
Query: 112 CPLTIEYD 119
P+ ++
Sbjct: 364 LPIGADFQ 371
>gi|307826200|ref|ZP_07656410.1| Endonuclease/exonuclease/phosphatase [Methylobacter tundripaludum
SV96]
gi|307732734|gb|EFO03601.1| Endonuclease/exonuclease/phosphatase [Methylobacter tundripaludum
SV96]
Length = 284
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 32/118 (27%), Gaps = 14/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L D + P +IAGDFN + F + +
Sbjct: 181 RLQISKLCARIDSHVPHDAPLIIAGDFNDWLGQAD--RLFHDHLGLQEVFRE-------- 230
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + VS ++ LS H PLT +
Sbjct: 231 ---THGRYARSFPAWMPFLPMDRIYYRGLTPVSCERLSHAP-WHVLSDHAPLTASFTL 284
>gi|225020579|ref|ZP_03709771.1| hypothetical protein CORMATOL_00586 [Corynebacterium matruchotii
ATCC 33806]
gi|224946525|gb|EEG27734.1| hypothetical protein CORMATOL_00586 [Corynebacterium matruchotii
ATCC 33806]
Length = 299
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 1/103 (0%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-GLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ V AG++ +N K + R + R ++ +
Sbjct: 197 DSQSQVVGAGEWYGAVNYRSKKRRKAPKTPQWYDVARRLHPDDAPYTWWTYRGRAFGNDA 256
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
D + + ++ S H PLT+ Y
Sbjct: 257 GWRIDYQAATKSMFERATTMRVDKAVDHAARWSDHAPLTVWYQ 299
>gi|223982521|ref|ZP_03632759.1| hypothetical protein HOLDEFILI_00033 [Holdemania filiformis DSM
12042]
gi|223965496|gb|EEF69770.1| hypothetical protein HOLDEFILI_00033 [Holdemania filiformis DSM
12042]
Length = 1904
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 17/119 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPF-VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + + A+Q + + VI GDFN ++ + F
Sbjct: 170 RQVQ-MAQLAEQIANDPVEYKVIMGDFNTDQDTYEFSRLL----------DYFNMANGHD 218
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ D + N L + + ++ +KLS H LT +
Sbjct: 219 DQWLRTYWPDDDPAMKVFAVDNILATKNI-----EIDNIKVVNNKLSDHYMLTADLTLS 272
>gi|308813644|ref|XP_003084128.1| exodeoxyribonuclease (ISS) [Ostreococcus tauri]
gi|116056011|emb|CAL58544.1| exodeoxyribonuclease (ISS) [Ostreococcus tauri]
Length = 1557
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 11/117 (9%), Positives = 28/117 (23%), Gaps = 11/117 (9%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--------DDFWQKMDPDGLLIRFPQE 58
++ + K P + GD N I + + + +
Sbjct: 108 RAMRAHLCELKKA-KPVIYCGDLNVAHEEIDLWGRHKENAKSAGFTPEERSAMSTLLSEC 166
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + + D + ++ + S HCP++
Sbjct: 167 ELVDS--FRHKHPDKRAYTSIADGDSITFSSTRRLADSIVDAEIYPDVTGSDHCPVS 221
>gi|330009934|ref|ZP_08306655.1| endonuclease/exonuclease/phosphatase family protein [Klebsiella sp.
MS 92-3]
gi|328534648|gb|EGF61218.1| endonuclease/exonuclease/phosphatase family protein [Klebsiella sp.
MS 92-3]
Length = 253
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 17/120 (14%)
Query: 3 SQQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + L +W + + G P V+AGDFN Q + L +E
Sbjct: 149 QRQAQLTMLAEWVNP-LPAGEPVVVAGDFNDW------RQQANQPLKAQAGL------EE 195
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S ++ + LS H PL++E
Sbjct: 196 IFTRARGRPARTFPVSFPLLRLDRIYVKNA--HASRPKALALKQWRHLSDHAPLSVEIHL 253
>gi|256060756|ref|ZP_05450919.1| AP endonuclease domain-containing protein [Brucella neotomae 5K33]
Length = 322
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ ++Q +++GD N +++ L P
Sbjct: 211 QQSEQIEALSEQFRGLSENAILSGDLNAA-----LWSATTKRI--AELAAMTPAPPTGPT 263
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 264 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 312
>gi|206579947|ref|YP_002239572.1| endonuclease/exonuclease/phosphatase family protein [Klebsiella
pneumoniae 342]
gi|288936416|ref|YP_003440475.1| endonuclease/exonuclease/phosphatase [Klebsiella variicola At-22]
gi|290510529|ref|ZP_06549899.1| endonuclease/exonuclease/phosphatase [Klebsiella sp. 1_1_55]
gi|206569005|gb|ACI10781.1| endonuclease/exonuclease/phosphatase family protein [Klebsiella
pneumoniae 342]
gi|288891125|gb|ADC59443.1| Endonuclease/exonuclease/phosphatase [Klebsiella variicola At-22]
gi|289777245|gb|EFD85243.1| endonuclease/exonuclease/phosphatase [Klebsiella sp. 1_1_55]
Length = 253
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 17/120 (14%)
Query: 3 SQQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + L +W + + G P V+AGDFN + + + R + +
Sbjct: 149 QRQAQLTMLAEWVNT-LPAGEPVVVAGDFNDWRQ--QANQPLKAQAGLEEIFTRA-RGRP 204
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + LD + + + + LS H PL++E
Sbjct: 205 ARTFPVSFPLLRLDRIYVKNAHASHPKALALKQWR-----------HLSDHAPLSVEIHL 253
>gi|156095775|ref|XP_001613922.1| sphingomyelin phosphodiesterase [Plasmodium vivax SaI-1]
gi|148802796|gb|EDL44195.1| sphingomyelin phosphodiesterase, putative [Plasmodium vivax]
Length = 753
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 31/147 (21%), Gaps = 29/147 (19%)
Query: 4 QQGEWLKKWADQ-----KIKTGIPFVIAGDFNR-KINSIGDTDDFWQKMDPDGLLIRFPQ 57
+Q L W IK P GDFN D + + +
Sbjct: 574 KQLNELSNWVYNGAPSFHIKKNEPLFFVGDFNIRYHLDKSFFDRVLSSGCLNSSVTKKAL 633
Query: 58 EKESTCN-VIKRNKSSLDYFV-IDRDNKNFLIDNSFSIVSYD------------------ 97
E DY + L++N + +
Sbjct: 634 ETTYDSYLNDYCMHMERDYSFKYNYTLDYILVNNDSDVKTLVPQTAIQKDYRPIQIIKSL 693
Query: 98 ---QSDLDTRRSKLSTHCPLTIEYDFE 121
T S H P+ +
Sbjct: 694 LGFIPYKCTYIHHPSDHFPIYATFKIP 720
>gi|189461652|ref|ZP_03010437.1| hypothetical protein BACCOP_02315 [Bacteroides coprocola DSM 17136]
gi|189431624|gb|EDV00609.1| hypothetical protein BACCOP_02315 [Bacteroides coprocola DSM 17136]
Length = 360
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 29/115 (25%), Gaps = 19/115 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + + ++ GDFN S Q ++ ++
Sbjct: 262 QADSVAQAIA--VNRTRYMLVCGDFNDSPISYA-HRVVGQGLND------VYRKAGRGPG 312
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++F I+ R S H P+ +
Sbjct: 313 FTYYENRFYF------RIDHIFASDAFRILECKID----RSINTSDHYPVWCLLE 357
>gi|332828694|gb|EGK01386.1| hypothetical protein HMPREF9455_02219 [Dysgonomonas gadei ATCC
BAA-286]
Length = 305
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 13/144 (9%), Positives = 32/144 (22%), Gaps = 30/144 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + K ++ ++ GDFN + D + +
Sbjct: 168 RHSAQLVLKKIEEMCGKDA-VILTGDFNVDQTHESYKLLANSNILFDSYEKAGVRYALNG 226
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR------------------ 104
+ + + + + F + Y R
Sbjct: 227 T-----FNAFKPNLMTNSRIDHIFVSGKFEVDRYGVLTDTYRVPVENSKELHVGDFPKEV 281
Query: 105 ------RSKLSTHCPLTIEYDFEK 122
S H P+ + ++K
Sbjct: 282 FSTEAETRLPSDHYPVKVYLHYKK 305
>gi|326521854|dbj|BAK04055.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 396
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 32/132 (24%), Gaps = 16/132 (12%)
Query: 5 QGEWL-------KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL----- 52
Q ++L +K K +IAGDFN +
Sbjct: 262 QAKYLLSKVFEFEKIISNKFTCKPSVIIAGDFNSTPGDKVYNYLVSASSESTDEAPIKLR 321
Query: 53 --IRFPQEKESTCNVIKRNKSSLDYFV--IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ N +LDY D K + S D
Sbjct: 322 SLYAANGGEPEFTNCTPGFTGTLDYIFLSGDNSIKPTTLLRIPRGGSPDVEGGLPNFHHP 381
Query: 109 STHCPLTIEYDF 120
S H P+ ++
Sbjct: 382 SDHLPIGADFQL 393
>gi|311347452|gb|ADP90671.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
Length = 518
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 30/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLL 52
L+ A+ + G +I GD N I D + G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 53 IRFPQEKESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + L D + I ++ Q+
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVLGDRTLVIDTF-QASF 294
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 295 LLPEVMGSDHCPVGAVLS 312
>gi|281338153|gb|EFB13737.1| hypothetical protein PANDA_004239 [Ailuropoda melanoleuca]
Length = 368
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 12/112 (10%), Positives = 33/112 (29%), Gaps = 7/112 (6%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KESTCNVIKRNKSSLDY 75
+P ++ GDFN + ++ + + R +
Sbjct: 252 AKVPLIVCGDFNAEPTEEVYKHFASSSLNLSSAYKLLSADGQSEPPYTTWKIRTSGECRH 311
Query: 76 FVI--DRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEYDFEKG 123
+ + ++ +++ +Q + S S H L ++ F +
Sbjct: 312 TLDYIWYSQHALRVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCDFSFNEE 363
>gi|156974066|ref|YP_001444973.1| hypothetical protein VIBHAR_01777 [Vibrio harveyi ATCC BAA-1116]
gi|156525660|gb|ABU70746.1| hypothetical protein VIBHAR_01777 [Vibrio harveyi ATCC BAA-1116]
Length = 446
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 11/127 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I V +GDFN + GD +
Sbjct: 318 QRQFKQMRAMAKSLNIPANETVVYSGDFNVNKLKFPGDYQQMIANLSAVEPEYSGYTAST 377
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ +L ++ + + S++ + +D + LS H
Sbjct: 378 FDPRINNFAGKALSGGDNVEYLDYVMVSSEYGAKSFNDNRVDVPRSTAASLWKHYNLSDH 437
Query: 112 CPLTIEY 118
P++
Sbjct: 438 FPVSTVL 444
>gi|119613616|gb|EAW93210.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2, isoform CRA_c
[Homo sapiens]
gi|221045760|dbj|BAH14557.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 30/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLL 52
L+ A+ + G +I GD N I D + G
Sbjct: 5 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 64
Query: 53 IRFPQEKESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + L D + I ++ Q+
Sbjct: 65 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVLGDRTLVIDTF-QASF 123
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 124 LLPEVMGSDHCPVGAVLS 141
>gi|5410346|gb|AAD43041.1|AF119046_1 APE2 protein [Homo sapiens]
Length = 518
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 30/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLL 52
L+ A+ + G +I GD N I D + G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 53 IRFPQEKESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + L D + I ++ Q+
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVLGDRTLVIDTF-QASF 294
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 295 LLPEVMGSDHCPVGAVLS 312
>gi|18375507|ref|NP_055296.2| DNA-(apurinic or apyrimidinic site) lyase 2 [Homo sapiens]
gi|73921676|sp|Q9UBZ4|APEX2_HUMAN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=AP endonuclease XTH2; AltName: Full=APEX nuclease
2; AltName: Full=APEX nuclease-like 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2; Short=AP
endonuclease 2
gi|4996359|dbj|BAA78422.1| APEX nuclease-like 2 protein [Homo sapiens]
gi|5102658|emb|CAB45242.1| AP endonuclease XTH2, putative [Homo sapiens]
gi|10336529|dbj|BAB13764.1| apurinic/apyrimidinic endonuclease 2 [Homo sapiens]
gi|12804203|gb|AAH02959.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Homo sapiens]
gi|57471611|emb|CAI43126.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Homo sapiens]
gi|57864642|gb|AAW56941.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Homo sapiens]
gi|119613615|gb|EAW93209.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2, isoform CRA_b
[Homo sapiens]
gi|123993987|gb|ABM84595.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [synthetic
construct]
gi|123997761|gb|ABM86482.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [synthetic
construct]
gi|208965822|dbj|BAG72925.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [synthetic
construct]
gi|311347418|gb|ADP90654.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347420|gb|ADP90655.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347422|gb|ADP90656.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347424|gb|ADP90657.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347426|gb|ADP90658.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347428|gb|ADP90659.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347430|gb|ADP90660.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347432|gb|ADP90661.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347434|gb|ADP90662.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347436|gb|ADP90663.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347438|gb|ADP90664.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347440|gb|ADP90665.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347442|gb|ADP90666.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347444|gb|ADP90667.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347446|gb|ADP90668.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347448|gb|ADP90669.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347450|gb|ADP90670.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347454|gb|ADP90672.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347456|gb|ADP90673.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347458|gb|ADP90674.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347460|gb|ADP90675.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347462|gb|ADP90676.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347464|gb|ADP90677.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347466|gb|ADP90678.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347468|gb|ADP90679.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347470|gb|ADP90680.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347472|gb|ADP90681.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347474|gb|ADP90682.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347476|gb|ADP90683.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347478|gb|ADP90684.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347480|gb|ADP90685.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347482|gb|ADP90686.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347484|gb|ADP90687.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347488|gb|ADP90689.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347490|gb|ADP90690.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347492|gb|ADP90691.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347494|gb|ADP90692.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
gi|311347496|gb|ADP90693.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
Length = 518
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 30/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLL 52
L+ A+ + G +I GD N I D + G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 53 IRFPQEKESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + L D + I ++ Q+
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVLGDRTLVIDTF-QASF 294
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 295 LLPEVMGSDHCPVGAVLS 312
>gi|254473115|ref|ZP_05086513.1| endonuclease/exonuclease/phosphatase family protein [Pseudovibrio
sp. JE062]
gi|211957836|gb|EEA93038.1| endonuclease/exonuclease/phosphatase family protein [Pseudovibrio
sp. JE062]
Length = 282
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 16/115 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L K + + VI GDFN + +S + F + S
Sbjct: 166 QAKRLLKISQAVSEPEDLRVICGDFNVEPDSETIRLLEADGLVELVKHYGFETTRNSY-- 223
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
Y + LID I ++ +S HCPL + +
Sbjct: 224 ----------YKKPGKFADYMLIDQIEQISTFQVLQKPE----VSDHCPLVLTLN 264
>gi|121705342|ref|XP_001270934.1| endonuclease/exonuclease/phosphatase family protein [Aspergillus
clavatus NRRL 1]
gi|119399080|gb|EAW09508.1| endonuclease/exonuclease/phosphatase family protein [Aspergillus
clavatus NRRL 1]
Length = 604
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 7/117 (5%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q E + + + + AGDFN + D ++ E
Sbjct: 490 QAEVVAAFTSSILAQDSKAKILTAGDFNEFAFAQPLESFVADSGLQDLDVVAGVASTERY 549
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N LD+ I + + + + S H P +
Sbjct: 550 TYLYDLNCQQLDHMFISPAL-----AAGAKMHHLHLNTWVSSSDQASDHDPTVALLN 601
>gi|148539953|ref|NP_079994.2| deoxyribonuclease-1-like 2 precursor [Mus musculus]
gi|59797962|sp|Q9D1G0|DNSL2_MOUSE RecName: Full=Deoxyribonuclease-1-like 2; AltName:
Full=Deoxyribonuclease I-like 2; Short=DNase I-like 2;
Flags: Precursor
gi|12834394|dbj|BAB22893.1| unnamed protein product [Mus musculus]
gi|76779307|gb|AAI06189.1| Dnase1l2 protein [Mus musculus]
Length = 278
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 11/99 (11%), Positives = 24/99 (24%), Gaps = 1/99 (1%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK-SSLDYFVID 79
+ GDFN + D ++ + + T +
Sbjct: 177 DDMLFLGDFNADCKYVKAHDWPSIRLRSSEVFKWLIPDSADTTVGNSDCAYDRIVVSGAH 236
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S + T+ +S H P+ + +
Sbjct: 237 LRRSLKPHSASVHNFQEEFDLDQTQALAISDHFPVEVTF 275
>gi|295425006|ref|ZP_06817715.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM
11664]
gi|295065324|gb|EFG56223.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM
11664]
Length = 367
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 39/132 (29%), Gaps = 16/132 (12%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRK-------INSIGDTDDFW-----QKMDP 48
M Q + L K + + K G ++ GDFN + W QKM P
Sbjct: 239 MRKAQMKILSKVIEAEYKAGNYVIVGGDFNHALGRDMLTHFDHQEKIPSWVSVLDQKMLP 298
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ +E V + F+I + + D +
Sbjct: 299 KDFIMVKATNRERVATVRSTDMKYRPKVNYQTVGDGFIISKNIKAKATDINTDYRYA--- 355
Query: 109 STHCPLTIEYDF 120
H P+ + +
Sbjct: 356 -DHNPVRLGFSL 366
>gi|158338869|ref|YP_001520046.1| hypothetical protein AM1_5782 [Acaryochloris marina MBIC11017]
gi|158309110|gb|ABW30727.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length = 290
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 31/119 (26%), Gaps = 16/119 (13%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ ++Q L +A ++ GDFN ++Q+ +
Sbjct: 186 IRNRQ---LDTFAKASQSIEGKLIVLGDFNATP-----WSPYFQRFERISQ--LQNSGHR 235
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+L I + + T ++ S H P+ +
Sbjct: 236 QWIWATWYFNQTLTTRYIKIPLDH------IETRGFTVLKTWTGQTGGSDHKPIVTVLE 288
>gi|262382995|ref|ZP_06076132.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262295873|gb|EEY83804.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 305
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 37/139 (26%), Gaps = 31/139 (22%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ + + K + +P ++ GDFN ++ + +D G++ Q +
Sbjct: 168 AESAKLILKKLKE-FPEKLPAILTGDFNV-----DQHNESYLLLDNSGIMRDSYQIADFR 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR------------------ 104
+ D + + F + Y R
Sbjct: 222 YVPNGTFNAFHADRKTDSRIDHLFLTKEFDVKKYGVLTDSYRSEAKESTEKEQNANFPKE 281
Query: 105 -------RSKLSTHCPLTI 116
S H P+ I
Sbjct: 282 VSMQKYVARTPSDHFPVMI 300
>gi|220933285|ref|YP_002512184.1| Endonuclease/exonuclease/phosphatase [Thioalkalivibrio sp.
HL-EbGR7]
gi|219994595|gb|ACL71197.1| Endonuclease/exonuclease/phosphatase [Thioalkalivibrio sp.
HL-EbGR7]
Length = 294
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 13/113 (11%), Positives = 31/113 (27%), Gaps = 21/113 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
++ + ++ V+ GD N ++ Q R
Sbjct: 194 EYIAEVLRDHEHVVVMGDMNCSCHADEVKRLVRQ-------TRLQEPLAAHKTYPSWRPA 246
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ D+ ++ + Y+ + S H P+ +E +G
Sbjct: 247 HAFDHILVTPGLGVEQVHV------YNVNY--------SDHLPVGVEIVVPEG 285
>gi|21243041|ref|NP_642623.1| hypothetical protein XAC2306 [Xanthomonas axonopodis pv. citri str.
306]
gi|21108551|gb|AAM37159.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 278
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 33/122 (27%), Gaps = 10/122 (8%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ ++Q L + P VIAGDFN +++ + + +
Sbjct: 154 IRTRQVADLLDFIASN-SAQAPVVIAGDFNTAADTLDLQ-ALRKGYGDSYGSVHRNSDAT 211
Query: 61 STCNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + +D+ ++ Y S H + +
Sbjct: 212 VSTLNMHVFDRPARIDHVFFQQNRLLAREARILFDTPY------AEGRWASDHYGVWVRL 265
Query: 119 DF 120
Sbjct: 266 QL 267
>gi|209551444|ref|YP_002283361.1| endonuclease/exonuclease/phosphatase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537200|gb|ACI57135.1| Endonuclease/exonuclease/phosphatase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 288
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 18/141 (12%), Positives = 39/141 (27%), Gaps = 30/141 (21%)
Query: 4 QQGEWLKKWADQKIKTG-----------------IPFVIAGDFNRKINSIGD------TD 40
+Q ++L + ++ G +VI GDFN + S
Sbjct: 152 RQLQFLNAHINAFVQEGGSLTGAGEFDLPEPPLPEDYVILGDFNMEPESPEYCALAGAGG 211
Query: 41 DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQ 98
++ ++ G + E+ + D+ + + +
Sbjct: 212 GYYGRVARIGTPVDAFAALEAYGPGSYSWMNPEDH-GERMHLDYCFVSCGLVSRLQAARI 270
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
S H PL +E +
Sbjct: 271 DTQSVG----SDHFPLWVEIE 287
>gi|58267852|ref|XP_571082.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|57227316|gb|AAW43775.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1256
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 41/130 (31%), Gaps = 6/130 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L + +L + +I VI+ N ++ + + D ++M + E+
Sbjct: 1093 ILDHEMVFLNGDLNYRIDQRRENVISSIANGELAYLLEHDQLRKEMRTNHAFRLRNFEEA 1152
Query: 61 STCN--VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--SDLDTRRSKLSTHCPLTI 116
K N + DY ++ D S + +S H P++
Sbjct: 1153 PITFAPTYKYNPGTHDYDSSEKRRIPAWCDRILYKKSPRVQALNYQRYEPTVSDHRPVSA 1212
Query: 117 --EYDFEKGN 124
+ N
Sbjct: 1213 GYTITLKAIN 1222
>gi|327470504|gb|EGF15960.1| exodeoxyribonuclease [Streptococcus sanguinis SK330]
Length = 275
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEK 59
+ P + GD+N I + + + G F
Sbjct: 154 ATLDGQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLH 213
Query: 60 ES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+R+K+S +L N + +D+ + H P+
Sbjct: 214 GDIPNQYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--DHTPIV 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 MEIEL 275
>gi|242078097|ref|XP_002443817.1| hypothetical protein SORBIDRAFT_07g002730 [Sorghum bicolor]
gi|241940167|gb|EES13312.1| hypothetical protein SORBIDRAFT_07g002730 [Sorghum bicolor]
Length = 369
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 35/156 (22%), Gaps = 38/156 (24%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------ 43
++ +W K+ + P + GD N I + +
Sbjct: 201 FQRRRKWDKRMLEFVQHVDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNQEDCG 260
Query: 44 ---------QKMDP-------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLI 87
++ +EK+ Y FL+
Sbjct: 261 QPGFTPAERRRFGNILFQGKLVDAYRHLHKEKDMDGGFSWSGHPIGKYRGKRMRIDYFLV 320
Query: 88 DNSFSIVSYDQS----DLDTRRSKLSTHCPLTIEYD 119
++ S HCP+T+E
Sbjct: 321 SEQLKDRIVSCEMHGRGIELDGFYGSDHCPVTLELS 356
>gi|125624386|ref|YP_001032869.1| endonuclease/exonuclease/phosphatase family protein [Lactococcus
lactis subsp. cremoris MG1363]
gi|124493194|emb|CAL98159.1| endonuclease/exonuclease/phosphatase family protein [Lactococcus
lactis subsp. cremoris MG1363]
gi|300071173|gb|ADJ60573.1| endonuclease/exonuclease/phosphatase family protein [Lactococcus
lactis subsp. cremoris NZ9000]
Length = 352
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 7/124 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ---EK 59
QQ L + + G + D+N + + W K P L + +
Sbjct: 232 KQQLLTLFDAMKKYVNKGDYVICGADYNHALAGKAHPELTWMKEFPTENLTKGMRVVAPT 291
Query: 60 ESTCNVIKRNKSSLDY-FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ F++ N+ + D + K S H P+ +++
Sbjct: 292 NAPTVRSLDFAYHQKNPKNTFGIIDGFIVSNNIKDLKIQTID---NQFKSSDHQPVLMDF 348
Query: 119 DFEK 122
EK
Sbjct: 349 SLEK 352
>gi|299782782|gb|ADJ40780.1| Exodeoxyribonuclease [Lactobacillus fermentum CECT 5716]
Length = 279
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 29/148 (19%)
Query: 2 LSQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDDF------------- 42
L + E ++W D+ ++ P + +GDFN I
Sbjct: 136 LKRLAER-QEWDDRYREYLTELDRQKPVIASGDFNVAHEEIDLAHPANNHHSAGFTDEER 194
Query: 43 --WQKMDPDGLLIRFPQ----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + G F E + +R +S +L+ + +
Sbjct: 195 EKFTALLAAGFTDSFRSLHPDETGAYSWWAQRAVTSKVN-NSGWRIDYWLVSDRLADQVV 253
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ +D+ + H P+ ++ + +
Sbjct: 254 SSTMIDSGERR--DHAPIQLDINIPAAD 279
>gi|297710110|ref|XP_002831748.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Pongo
abelii]
Length = 518
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 30/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLL 52
L+ A+ + G +I GD N I D + G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEDDPGRKWMDSLLSNLGCQ 235
Query: 53 IRFPQEKESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + L D + I ++ Q+
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAITGARHLNYGSRLDYVLGDRTLVIDTF-QASF 294
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 295 LLPEVMGSDHCPVGAVLS 312
>gi|260663817|ref|ZP_05864702.1| exodeoxyribonuclease III [Lactobacillus fermentum 28-3-CHN]
gi|260551578|gb|EEX24765.1| exodeoxyribonuclease III [Lactobacillus fermentum 28-3-CHN]
Length = 279
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 29/148 (19%)
Query: 2 LSQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDDF------------- 42
L + E ++W D+ ++ P + +GDFN I
Sbjct: 136 LKRLAER-QEWDDRYREYLTELDRQKPVIASGDFNVAHEEIDLAHPANNHHSAGFTDEER 194
Query: 43 --WQKMDPDGLLIRFPQ----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + G F E + +R +S +L+ + +
Sbjct: 195 EKFTALLAAGFTDSFRSLHPDETGAYSWWAQRAVTSKVN-NSGWRIDYWLVSDRLADQVV 253
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ +D+ + H P+ ++ + +
Sbjct: 254 SSTMIDSGERR--DHAPIQLDINIPAAD 279
>gi|221221062|gb|ACM09192.1| Deoxyribonuclease gamma precursor [Salmo salar]
Length = 331
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 2/100 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GDFN + + D ++ D + T + + +
Sbjct: 163 DHIMILGDFNADGSYVTKGDMTNIRIRSDEKFHWVIGDDVDTTANTSNDHTYDRIVMYGD 222
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
D N ++ NS ++ ++ ++ L S H P+ +E
Sbjct: 223 DMLNAMVPNSAKPFNFHKAFRLSKAMALSISDHYPVEVEL 262
>gi|332975843|gb|EGK12721.1| hypothetical protein HMPREF9374_1315 [Desmospora sp. 8437]
Length = 253
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 33/123 (26%), Gaps = 20/123 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
M QQ + L ++ P V GD+N ++ P L
Sbjct: 140 MRRQQVDLL---LEECRDPAQPVVALGDWNVTP-----RRPAVTRLAPFLLDTLGESGVS 191
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++ + +DY + + + S H P+ ++
Sbjct: 192 ASTYPCPSPRKRIDYIFCS-RHFHRETASVVVTPGC-----------PSDHLPVLSVLNW 239
Query: 121 EKG 123
+
Sbjct: 240 KSE 242
>gi|242090413|ref|XP_002441039.1| hypothetical protein SORBIDRAFT_09g019230 [Sorghum bicolor]
gi|241946324|gb|EES19469.1| hypothetical protein SORBIDRAFT_09g019230 [Sorghum bicolor]
Length = 393
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 33/125 (26%), Gaps = 10/125 (8%)
Query: 1 MLSQ--QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---GLLIRF 55
+LS+ Q E L K +IAGDFN + L
Sbjct: 267 LLSRVSQFEQL---ISNKYNCKPSVIIAGDFNSTPGDKVYNYLVSAGGETPIKLSSLYAA 323
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS--FSIVSYDQSDLDTRRSKLSTHCP 113
+ N +LDY + + S D S H P
Sbjct: 324 NGGEPEYTNYTPGFTGTLDYIFLSDGSSIKPTSLLCLPRGDSEDVKGGLPNFQHPSDHLP 383
Query: 114 LTIEY 118
+ ++
Sbjct: 384 IGADF 388
>gi|194228591|ref|XP_001494126.2| PREDICTED: similar to apurinic/apyrimidinic endonuclease 2 [Equus
caballus]
Length = 512
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 29/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLL 52
L+ A+ + G +I GD N I D + G
Sbjct: 175 RLLQTRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEDDPGRKWMDSLLSNPGCQ 234
Query: 53 IRFPQEKESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
S L D + I ++ Q+
Sbjct: 235 AESHVGPFIDSYRCFQPKQEGAFTCWSVVSGARPLNYGCRLDYVLGDRTLVIDTF-QASF 293
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 294 LLPEVMGSDHCPVGAVLS 311
>gi|148975846|ref|ZP_01812635.1| Endonuclease/exonuclease/phosphatase [Vibrionales bacterium SWAT-3]
gi|145964591|gb|EDK29844.1| Endonuclease/exonuclease/phosphatase [Vibrionales bacterium SWAT-3]
Length = 430
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 8/127 (6%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQE 58
+ +Q + + +Q + P + GDFN D + +D ++
Sbjct: 302 IRMRQVGEILAFVEQLGLPENEPVIFGGDFNIAKHKFPLDFTQMLRVLDLQEPPLKGSLA 361
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ------SDLDTRRSKLSTHC 112
V + S D + + S S D LS H
Sbjct: 362 HSYDPLVNQNLSDSDQSAQERLDYLLYSNNGSVVASSSKIEVLRNFDDDMWGVWDLSDHL 421
Query: 113 PLTIEYD 119
++ ++
Sbjct: 422 AVSARFE 428
>gi|109900032|ref|YP_663287.1| endonuclease/exonuclease/phosphatase [Pseudoalteromonas atlantica
T6c]
gi|109702313|gb|ABG42233.1| Endonuclease/exonuclease/phosphatase [Pseudoalteromonas atlantica
T6c]
Length = 243
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 12/118 (10%)
Query: 3 SQQGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L ++ +K+ P V+ GDFN D Q ++ + + FP
Sbjct: 132 RKQFALLAEYLREKMAGSKIPIVLGGDFNEWQFMTKAFKDINQVLNENPVRATFPVAWPL 191
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDN-SFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
LD D + + S +S R S H P+ ++
Sbjct: 192 F---------RLDRLWTSFDLSLMKKRDANISSISASVLKTPQTRQF-SDHYPILLDI 239
>gi|116511761|ref|YP_808977.1| metal-dependent hydrolase [Lactococcus lactis subsp. cremoris SK11]
gi|116107415|gb|ABJ72555.1| Metal-dependent hydrolase [Lactococcus lactis subsp. cremoris SK11]
Length = 352
Score = 44.1 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 37/124 (29%), Gaps = 7/124 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ---EK 59
QQ L + + G + D+N + + W K P L + +
Sbjct: 232 KQQLVTLFDAMKKYVNKGDYVICGADYNHALAGKAHPELTWMKEFPTENLTKGMRVVAPT 291
Query: 60 ESTCNVIKRNKSSLDY-FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ FL+ N+ + D + K S H P+ +++
Sbjct: 292 NAPTVRSLDFAYHQKNPKNTFGIIDGFLVSNNIKDLKIQTID---NQFKSSDHQPVLMDF 348
Query: 119 DFEK 122
EK
Sbjct: 349 SLEK 352
>gi|323967391|gb|EGB62812.1| endonuclease/Exonuclease/phosphatase [Escherichia coli M863]
gi|327253576|gb|EGE65205.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli STEC_7v]
Length = 253
Score = 44.1 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKMQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|262041126|ref|ZP_06014344.1| endonuclease/exonuclease/phosphatase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259041576|gb|EEW42629.1| endonuclease/exonuclease/phosphatase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 253
Score = 44.1 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 17/120 (14%)
Query: 3 SQQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + L +W + + G P V+AGDFN Q + L +E
Sbjct: 149 QRQAQLTMLAEWVNT-LPAGEPVVVAGDFNDW------RQQANQPLKAQAGL------EE 195
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S ++ + LS H PL++E
Sbjct: 196 IFTRARGRPARTFPVSFPLLRLDRIYVKNA--HASRPKALALKQWRHLSDHAPLSVEIHL 253
>gi|325983079|ref|YP_004295481.1| endonuclease/exonuclease/phosphatase [Nitrosomonas sp. AL212]
gi|325532598|gb|ADZ27319.1| Endonuclease/exonuclease/phosphatase [Nitrosomonas sp. AL212]
Length = 250
Score = 44.1 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 29/118 (24%), Gaps = 14/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L K + P +IAGDFN + + I +
Sbjct: 147 KRQLSALVKRISTHVSASEPLIIAGDFND-WREQAEHYLHRDLGVKEVFKITRGAYARTF 205
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ Y+ + +LS H PL E+
Sbjct: 206 PAWMPVLSMDRIYYRGLDIIDCNRLHGQPWH-------------RLSDHIPLLAEFRL 250
>gi|229823722|ref|ZP_04449791.1| hypothetical protein GCWU000282_01024 [Catonella morbi ATCC 51271]
gi|229786761|gb|EEP22875.1| hypothetical protein GCWU000282_01024 [Catonella morbi ATCC 51271]
Length = 275
Score = 44.1 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
L + E W K+AD + P + GDFN I + +
Sbjct: 136 LKRLAERQVWDAKYADYLVSLDAKKPVLATGDFNVAHQEIDLANPGANRQSAGFTDEERA 195
Query: 50 -----------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ +R+++S +L+ + +
Sbjct: 196 GFTHLLSRGFTDSFRHLHGDVPHQYTWWAQRSRTSKIN-NTGWRIDYWLVSDRIADKVTK 254
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
LD+ + H P+ +E +
Sbjct: 255 SEMLDSGARQ--DHTPILLEINL 275
>gi|152969375|ref|YP_001334484.1| putative DNase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|238893840|ref|YP_002918574.1| putative DNase [Klebsiella pneumoniae NTUH-K2044]
gi|150954224|gb|ABR76254.1| putative DNase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|238546156|dbj|BAH62507.1| putative DNase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 253
Score = 44.1 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 17/120 (14%)
Query: 3 SQQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + L +W + + G P V+AGDFN Q + L +E
Sbjct: 149 QRQAQLTMLAEWVNT-LPAGEPVVVAGDFNDW------RQQANQPLKAQAGL------EE 195
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S ++ + LS H PL++E
Sbjct: 196 IFTRARGRPARTFPVSFPLLRLDRIYVKNA--HASRPKALALKQWRHLSDHAPLSVEIHL 253
>gi|32472775|ref|NP_865769.1| signal peptide [Rhodopirellula baltica SH 1]
gi|32444012|emb|CAD73454.1| hypothetical protein-signal peptide prediction [Rhodopirellula
baltica SH 1]
Length = 284
Score = 44.1 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 6/118 (5%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
++ + K + +G ++ GD N ++ D + + +
Sbjct: 171 REIRAMIKSMKSDLDSGRSMLLIGDLNHSPDTDEYKLWK----DAGWIDTFAKVGEGNGF 226
Query: 64 NVIKRNKSSL-DYFVIDRDNKNFL-IDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N DY + ++ ++ D + LS H P +D
Sbjct: 227 TIKADNPEWRIDYVFATGPIAKRVGESRPLFEGAFRVNNEDEKSYALSDHLPQLAVFD 284
>gi|324114357|gb|EGC08326.1| endonuclease/Exonuclease/phosphatase [Escherichia fergusonii B253]
Length = 253
Score = 44.1 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKMQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ R + + N+ S + LS H PL+ E
Sbjct: 197 FTHAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|73670429|ref|YP_306444.1| hypothetical protein Mbar_A2969 [Methanosarcina barkeri str.
Fusaro]
gi|72397591|gb|AAZ71864.1| hypothetical protein Mbar_A2969 [Methanosarcina barkeri str.
Fusaro]
Length = 278
Score = 44.1 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 14/110 (12%), Positives = 29/110 (26%), Gaps = 4/110 (3%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
Q FVI GD N + + + + N +
Sbjct: 171 RQTCPVEDNFVIMGDLNADGSYFDEN--KANSLSCGEYCWLI--DNSMDTTTGDTNCTYD 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + F ++ + + +S H P+ E+ F+
Sbjct: 227 RIIITEDMESYFTGNSGLFRYDLKYNLTSEETNAVSDHYPVYAEFAFDST 276
>gi|332293566|ref|YP_004432175.1| Endonuclease/exonuclease/phosphatase [Krokinobacter diaphorus
4H-3-7-5]
gi|332171652|gb|AEE20907.1| Endonuclease/exonuclease/phosphatase [Krokinobacter diaphorus
4H-3-7-5]
Length = 364
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 15/107 (14%), Positives = 28/107 (26%), Gaps = 16/107 (14%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
K +P ++ GDFN + L+ + N +
Sbjct: 236 YKRKMPVIVMGDFNDVA-----WSETTSLFRKTSTLLDPRIGRGFY------NTFNAKNV 284
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ + + L + S H P+ E FE
Sbjct: 285 LMRWPLDHLFTSEE-----FRVKTLVRTKDIKSDHFPMYTELTFEPA 326
>gi|297711442|ref|XP_002832360.1| PREDICTED: deoxyribonuclease-1-like 1-like [Pongo abelii]
Length = 218
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 30/105 (28%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN S+ ++ + + E T + + +
Sbjct: 89 QSKDVILLGDFNADCASLTKKRLDKLELRTEPGFHWVIADGEDTTVRASTHCTYDRIVLH 148
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ L + + +S H P+ +E +
Sbjct: 149 GERCRSLLHTAAAFDFPTSFQLTEEEALNISDHYPVEVELKLSQA 193
>gi|323344203|ref|ZP_08084429.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
oralis ATCC 33269]
gi|323094932|gb|EFZ37507.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
oralis ATCC 33269]
Length = 317
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 17/130 (13%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L D +++ ++AGDFN +S + + + +
Sbjct: 184 ARRLGAAVDSIRRLSPRAKVIVAGDFNDYSDSRSIDYVCKRGLINVSEGAKGSHGAK-GT 242
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------------LS 109
K SLD+ + D D + L++ + +D T K S
Sbjct: 243 YRYKGEWGSLDHILADEDLADSLVECRIHDAPFLLTDDKTYGGKQPFRTYIGPKYQQGFS 302
Query: 110 THCPLTIEYD 119
H PL +
Sbjct: 303 DHLPLVARFR 312
>gi|296235588|ref|XP_002762961.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Callithrix
jacchus]
Length = 518
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 30/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLL 52
L+ A+ + G +I GD N I D + G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDSVNLECFEEDPGRKWMDGLLSNLGCQ 235
Query: 53 IRFPQEKESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + L D + I ++ Q+
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRIDYVLGDRTLVIDTF-QASF 294
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 295 LLPEVMGSDHCPVGAVLS 312
>gi|165874703|gb|ABY68234.1| DNA lyase [Beauveria bassiana]
Length = 576
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 18/155 (11%), Positives = 33/155 (21%), Gaps = 41/155 (26%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFN----------------------RKINSIGDT 39
+Q E L I G ++AGD N + S+
Sbjct: 143 RQSFVEALDVRIRNLIAAGKQAILAGDLNIIRSEMDSSNIGESLRKEGISMDEWQSMPTR 202
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKN 84
Q + ++ ++ K + +
Sbjct: 203 RILNQLLFEGTVVGDRDDDRGRAVLWDICRCFHPTRLGMHTCWDTKRNTRPANVGSRIDY 262
Query: 85 FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 263 ILCSDGLK--SWFVDSNIQEGLMGSDHCPVYATMS 295
>gi|41055919|ref|NP_956440.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Danio rerio]
gi|28278715|gb|AAH44527.1| Zgc:55889 [Danio rerio]
gi|182890762|gb|AAI65311.1| Zgc:55889 protein [Danio rerio]
Length = 558
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 10/113 (8%), Positives = 25/113 (22%), Gaps = 8/113 (7%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+WL ++ + + N D + F ++ +
Sbjct: 208 KWLDQFLFETAENSENG------NAADEPAEDFQESASGGKFVDSFRYFHPKRSNAFTCW 261
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++S + + S HCP+ +
Sbjct: 262 STLTG-ARQTNYGTRIDYIFSNHSLVKT-FFIGVDIMPEVEGSDHCPVWAQLS 312
>gi|17545188|ref|NP_518590.1| hypothetical protein RSc0469 [Ralstonia solanacearum GMI1000]
gi|17427479|emb|CAD13997.1| putative endonuclease/exonuclease/phosphatase protein [Ralstonia
solanacearum GMI1000]
Length = 248
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 13/117 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L + + P V+AGDFN N + Q + + + +
Sbjct: 143 RRQAEALIERVCSVVPIDAPLVVAGDFNDWNNRLD--RVICQALGVTEVADKAAGARPLR 200
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + ++ S H PL E
Sbjct: 201 TFPSH---------LPWLRLDRIYVRGF--EIDRAHALTGRDWAQRSDHVPLLAELS 246
>gi|134112357|ref|XP_775154.1| hypothetical protein CNBE4270 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257806|gb|EAL20507.1| hypothetical protein CNBE4270 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1312
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 41/130 (31%), Gaps = 6/130 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L + +L + +I VI+ N ++ + + D ++M + E+
Sbjct: 1149 ILDHEMVFLNGDLNYRIDQRRENVISSIANGELAYLLEHDQLRKEMRTNHAFRLRNFEEA 1208
Query: 61 STCN--VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--SDLDTRRSKLSTHCPLTI 116
K N + DY ++ D S + +S H P++
Sbjct: 1209 PITFAPTYKYNPGTHDYDSSEKRRIPAWCDRILYKKSPRVQALNYQRYEPTVSDHRPVSA 1268
Query: 117 --EYDFEKGN 124
+ N
Sbjct: 1269 GYTITLKAIN 1278
>gi|184154634|ref|YP_001842974.1| exodeoxyribonuclease [Lactobacillus fermentum IFO 3956]
gi|227513882|ref|ZP_03943931.1| exodeoxyribonuclease III [Lactobacillus fermentum ATCC 14931]
gi|183225978|dbj|BAG26494.1| exodeoxyribonuclease [Lactobacillus fermentum IFO 3956]
gi|227087743|gb|EEI23055.1| exodeoxyribonuclease III [Lactobacillus fermentum ATCC 14931]
Length = 279
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 29/148 (19%)
Query: 2 LSQQGEWLKKWADQ------KIKTGIPFVIAGDFNRKINSIGDTDDF------------- 42
L + E ++W D+ ++ P + +GDFN I
Sbjct: 136 LKRLAER-QEWDDRYREYLTELDRQKPVIASGDFNVAHEEIDLAHPANNHHSAGFTDEER 194
Query: 43 --WQKMDPDGLLIRFPQ----EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
+ + G F E + +R +S +L+ + +
Sbjct: 195 EKFTALLAAGFTDSFRSLHPDETGAYSWWAQRAVTSKVN-NSGWRIDYWLVSDRLADQVV 253
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ +D+ + H P+ ++ + +
Sbjct: 254 SSTMIDSGERR--DHAPIQLDINIPAAD 279
>gi|145606629|ref|XP_364566.2| hypothetical protein MGG_09360 [Magnaporthe oryzae 70-15]
gi|145014310|gb|EDJ98878.1| hypothetical protein MGG_09360 [Magnaporthe oryzae 70-15]
Length = 296
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 30/124 (24%), Gaps = 6/124 (4%)
Query: 3 SQQGEWLKKWADQKIKTG-----IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ 57
+ + + A + P AGD N + D L+
Sbjct: 171 ERSADMIVDLAGEWESDDGGASKSPVFFAGDLNSDDQNQAYKTLATAMRDSRDLVPEQRL 230
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTI 116
+ + D +D Y S+ +S H P+ +
Sbjct: 231 HGNTNTYTAFTALLTWDDKRLDHVFVKDPSVGGLRFDGYSVLSNRFDDGIFISDHRPVVL 290
Query: 117 EYDF 120
+ D
Sbjct: 291 DVDL 294
>gi|83409938|emb|CAI64359.1| conserved hypothetical protein [uncultured archaeon]
Length = 347
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 35/131 (26%), Gaps = 14/131 (10%)
Query: 5 QGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDG---------LLI 53
Q + D+ V+ GDFN + + + +
Sbjct: 217 QALETRMLIDKLFDEDEDALIVVCGDFNAESDEVPVEAIRGDVENTGNGKLARRALVPCE 276
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI---VSYDQSDLDTRRSKLST 110
R E + +D+ ++ R + + + ++ S
Sbjct: 277 RTIPESSRFSMLYIGQGRMIDHLLVSRSLLPYYTGSEIHNELLHDESIAFATDKKYPESD 336
Query: 111 HCPLTIEYDFE 121
H P+ +++
Sbjct: 337 HAPVIAKFELP 347
>gi|327261945|ref|XP_003215787.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Anolis
carolinensis]
Length = 530
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 36/137 (26%), Gaps = 31/137 (22%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------------------D 41
L+ A+ ++ G VI GD N I D
Sbjct: 166 LQARAEALLRAGGHVVIMGDINTAHKPIDHCDPGDLESFQEHPGRNWLDGFLWEPGKESP 225
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + Q++ TC N + + L D + ++ ++
Sbjct: 226 HGELFVDTFRFLHPTQKEAYTCWC---NVTGSRHLNYGTRIDYILADRALALSELKEA-Q 281
Query: 102 DTRRSKLSTHCPLTIEY 118
S HCP+
Sbjct: 282 LRPEVFGSDHCPVQAVL 298
>gi|164429579|ref|XP_964325.2| hypothetical protein NCU01961 [Neurospora crassa OR74A]
gi|157073536|gb|EAA35089.2| hypothetical protein NCU01961 [Neurospora crassa OR74A]
Length = 630
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 25/119 (21%), Gaps = 10/119 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L ++ L ++ + + ++ G G L F ++
Sbjct: 187 LKKEAMTLDQFISTPSRRFLNQIVFGGRVIGEPDEGREKPVL-----WDLCREFHPKRPG 241
Query: 62 -TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R + L + S HCP+
Sbjct: 242 MYTCWETRKNA--RPGNFGSRIDYVLCSSGIKDW--FVDANIQEGLLGSDHCPVYATIS 296
>gi|296875948|ref|ZP_06900007.1| RgfB protein [Streptococcus parasanguinis ATCC 15912]
gi|296433023|gb|EFH18811.1| RgfB protein [Streptococcus parasanguinis ATCC 15912]
Length = 270
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 36/118 (30%), Gaps = 7/118 (5%)
Query: 5 QGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q EW ++K+ +Q K PF++AGDFN G + I + K +
Sbjct: 158 QFEWPRIEKYFNQVEK---PFILAGDFNNPAGQEGYETILSSSLKLQDSFIEAKETKGTY 214
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V D V + I + +S H L E
Sbjct: 215 T-VGPGIDGWTDNQV-PLRIDYVFASPEWEIKRLHVIFDGQNKPLVSDHYGLEAELSL 270
>gi|302561304|ref|ZP_07313646.1| endonuclease/exonuclease/phosphatase [Streptomyces griseoflavus
Tu4000]
gi|302478922|gb|EFL42015.1| endonuclease/exonuclease/phosphatase [Streptomyces griseoflavus
Tu4000]
Length = 605
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 14/118 (11%)
Query: 5 QGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + + +K V GD N S + + E+ S
Sbjct: 498 QAKAVHDFTAKILKTQKNAAVVALGDINDFEFSETTDILEGRGTLWSAIKSLPKSERYSY 557
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYD 119
+ LI S SYD ++S H P + +
Sbjct: 558 VY-----------QGNSQALDQILITPSIRRFSYDSVHINAEFHDQISDHDPQILRFR 604
>gi|313159067|gb|EFR58442.1| endonuclease/exonuclease/phosphatase family protein [Alistipes sp.
HGB5]
Length = 348
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 18/116 (15%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+++ + + P ++AGDFN +S + +
Sbjct: 251 AAQVREIRAETDASPYPVILAGDFNDTPSSYTYREMKGAL-------------TDGFRRC 297
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ Y D++F V Y +S H + E F+
Sbjct: 298 GNGYGGTFRYLGGLLRIDYVFYDDTFECVRY-----YMPSEVVSDHKVVIAELRFK 348
>gi|302186656|ref|ZP_07263329.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
syringae 642]
Length = 233
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 33/118 (27%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + L + +I G P ++AGDFN + + + K
Sbjct: 132 RQQLKLLNELM-ARIPEGEPVIVAGDFNDWRQRADE-SLQGSGLHEVFVERFGAPAKSFP 189
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N+ S S S LS H PL +E
Sbjct: 190 ARW------------PLLRLDRIYVRNATSHRPKVLSSRPW--SHLSDHAPLAVELTL 233
>gi|298375120|ref|ZP_06985077.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
gi|298267620|gb|EFI09276.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
Length = 306
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 35/139 (25%), Gaps = 31/139 (22%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ + + K + +P ++ GDFN S + +D G++ + +
Sbjct: 168 AESAKLILKKIKE-FPKRLPAILTGDFNVDQTSESY-----KLLDGSGIMRDSYEIADFR 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR------------------ 104
D + + F + Y R
Sbjct: 222 YAPNGTFNGFHPDRKNDSRIDHLFLTKEFEVKKYGILTDTYRSEVKESAQKEQNGNFPKE 281
Query: 105 -------RSKLSTHCPLTI 116
S H P+ I
Sbjct: 282 VSLSKYEARTPSDHFPVMI 300
>gi|227505350|ref|ZP_03935399.1| possible exodeoxyribonuclease III [Corynebacterium striatum ATCC
6940]
gi|227198052|gb|EEI78100.1| possible exodeoxyribonuclease III [Corynebacterium striatum ATCC
6940]
Length = 307
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 6/100 (6%)
Query: 26 AGDFNRKINSIGDTDDFWQKMDPDGL------LIRFPQEKESTCNVIKRNKSSLDYFVID 79
GD+ I+ +TD + D + P R ++ +
Sbjct: 208 LGDYLGVIDYATNTDWSARVPGEDAVQWYDVARRLAPDADGPYTWWTYRGQAFNNDAGWR 267
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
D + T + S H PL ++Y
Sbjct: 268 IDYQAATKAMLERAEKTWVEKAPTVEQRWSDHSPLLVQYR 307
>gi|301307706|ref|ZP_07213663.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
gi|300834380|gb|EFK64993.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
Length = 305
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 16/139 (11%), Positives = 37/139 (26%), Gaps = 31/139 (22%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ + + K + +P ++ GDFN ++ + +D G++ Q +
Sbjct: 168 AESAKLILKKLKE-FPEKLPAILTGDFNV-----DQHNESYLLLDNSGIMRDSYQIADFR 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR------------------ 104
+ D + + F + Y R
Sbjct: 222 YVPNGTFNAFHADRKTDSRIDHLFLTKEFDVKKYGVLTDTYRSEAKESAQKEQDANFPKE 281
Query: 105 -------RSKLSTHCPLTI 116
S H P+ +
Sbjct: 282 VSMQKYVARTPSDHFPVMV 300
>gi|262384583|ref|ZP_06077717.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262293876|gb|EEY81810.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 306
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 35/139 (25%), Gaps = 31/139 (22%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ + + K + +P ++ GDFN S + +D G++ + +
Sbjct: 168 AESAKLILKKIKE-FPKRLPAILTGDFNVDQTSESY-----KLLDGSGIMRDSYEIADFR 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR------------------ 104
D + + F + Y R
Sbjct: 222 YAPNGTFNGFHPDRKTDSRIDHLFLTKEFEVKKYGILTDTYRSEVKESAQKEQNGNFPKE 281
Query: 105 -------RSKLSTHCPLTI 116
S H P+ I
Sbjct: 282 VSLSKYEARTPSDHFPVMI 300
>gi|189461907|ref|ZP_03010692.1| hypothetical protein BACCOP_02573 [Bacteroides coprocola DSM 17136]
gi|189431301|gb|EDV00286.1| hypothetical protein BACCOP_02573 [Bacteroides coprocola DSM 17136]
Length = 289
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 15/107 (14%), Positives = 25/107 (23%), Gaps = 4/107 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I P V+ GDFN S + Q +
Sbjct: 186 KEIVGDQPAVLTGDFNVTDQSEAYETITTNEFVLKDAYKEAAQREGVD-YTFHDFG--RI 242
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQS-DLDTRRSKLSTHCPLTIEYDF 120
+ + S + + LS H P + F
Sbjct: 243 PADSCDQIDFIFVTPQIKVESSYIPQEAEEAGQFLSDHNPEVVHLSF 289
>gi|291514150|emb|CBK63360.1| Metal-dependent hydrolase [Alistipes shahii WAL 8301]
Length = 539
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 11/112 (9%), Positives = 28/112 (25%), Gaps = 10/112 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + ++ +P + DFN + Q M ++
Sbjct: 431 KESIKLIINKIEEVNSEQLPVFLTADFNSD-TDESCFNPLHQVMKDARATAPVTDQEA-- 487
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ + + DN + + +S H P+
Sbjct: 488 TYNGYKTSGTRK-------LDHIFYDNGCVASIFQTLKENYGAPYISDHYPV 532
>gi|224045591|ref|XP_002197268.1| PREDICTED: similar to Endonuclease/exonuclease/phosphatase family
domain-containing protein 1 [Taeniopygia guttata]
Length = 790
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 14/118 (11%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIG---DTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ +K +I GDFN+ +S + + + P +
Sbjct: 654 LQETLKGEKDVIILGDFNQAPDSSDHDILRKEKFHHLVPSSTFTNISTKNPQGSKS---- 709
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
LD I R K + + + D + S HCP+ E+ EK
Sbjct: 710 ---LDNIWISRSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEFYLEKD 764
>gi|327474597|gb|EGF20002.1| exodeoxyribonuclease [Streptococcus sanguinis SK408]
gi|328946601|gb|EGG40739.1| exodeoxyribonuclease [Streptococcus sanguinis SK1087]
Length = 275
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEK 59
+ P + GD+N I + + + G F
Sbjct: 154 ATLDGQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERAGFTNLLAKGFTDTFRHLH 213
Query: 60 ES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+R+K+S +L N + +D+ + H P+
Sbjct: 214 GDIPDQYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--DHTPIV 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 MEIEL 275
>gi|149376400|ref|ZP_01894162.1| Metal-dependent hydrolase [Marinobacter algicola DG893]
gi|149359241|gb|EDM47703.1| Metal-dependent hydrolase [Marinobacter algicola DG893]
Length = 286
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 34/123 (27%), Gaps = 22/123 (17%)
Query: 2 LSQQGEWLK-KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
LS+ + + + I V+ GD N + P +
Sbjct: 180 LSKAAQQRQLAYIQALISEYQHVVLMGDLNNHAEELLSNTPL-------KHSNLVPLPET 232
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ R +R + L+ S I + +S H P+ ++
Sbjct: 233 AHSFPSWR---------PERALDHILVSPSLEIRRSEVVSYP-----VSDHLPIAMDIKL 278
Query: 121 EKG 123
KG
Sbjct: 279 PKG 281
>gi|187732981|ref|YP_001881024.1| endonuclease/exonuclease/phosphatase family protein [Shigella
boydii CDC 3083-94]
gi|187429973|gb|ACD09247.1| endonuclease/exonuclease/phosphatase family protein [Shigella
boydii CDC 3083-94]
Length = 253
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|85096028|ref|XP_960186.1| hypothetical protein NCU09788 [Neurospora crassa OR74A]
gi|28921667|gb|EAA30950.1| hypothetical protein NCU09788 [Neurospora crassa OR74A]
Length = 622
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 6/118 (5%)
Query: 4 QQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ E K+ + ++ + AGDFN T + +
Sbjct: 495 QQAEITAKFISKILQADPAARVIAAGDFNEFAFVKPLTTFAEVSGLKELDEALNTPVENR 554
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N +LD+ L + S T + +S H P +D
Sbjct: 555 YTYSYDMNAQALDH----MYISPVLASSKSKFQHIHVSSWVTDSAVVSDHDPSVALFD 608
>gi|290960579|ref|YP_003491761.1| hydrolase [Streptomyces scabiei 87.22]
gi|260650105|emb|CBG73221.1| putative hydrolase [Streptomyces scabiei 87.22]
Length = 371
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 7/113 (6%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ + V+AGD N + S + + T KR++ L
Sbjct: 258 EAALTRSPRVVVAGDLNDSLASPPVRLLLDAGLSEAMTHESYGANPPGTHGTGKRDEQKL 317
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQ-------SDLDTRRSKLSTHCPLTIEYD 119
DY + + + + + ++ + S H L + D
Sbjct: 318 DYLLFGPELWERVTNVGVERRGIWAPRTFPSFDTVTSKADQASDHAALFADLD 370
>gi|255530372|ref|YP_003090744.1| endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
gi|255343356|gb|ACU02682.1| Endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
Length = 303
Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 25/104 (24%), Gaps = 4/104 (3%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ P ++AGDFN + D + +
Sbjct: 201 AAQYPRDYPQLLAGDFNA-SAENKVYELVISAKWKDIYTTLHGEAEPGYTV---HQFQGE 256
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+Y + + S + + S H ++ E
Sbjct: 257 NYSKKGKKIDFIFCKGEVTAQSAGILKDNVKGKYPSDHYFVSAE 300
>gi|228469461|ref|ZP_04054469.1| AP endonuclease domain protein [Porphyromonas uenonis 60-3]
gi|228309036|gb|EEK17679.1| AP endonuclease domain protein [Porphyromonas uenonis 60-3]
Length = 392
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 17/121 (14%)
Query: 2 LSQQGEWLKK-WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ + +++ + D + ++ GDFN S
Sbjct: 288 FKRRAQQVEQIYQDINYQESPYLLVCGDFNDTPISYTHHRLSAGL-------HDAIATTG 340
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
N KS +I + L + + R +S H P+ +
Sbjct: 341 RGTNYSYYFKS-----LIGVRIDHMLYSDQIVARAAHVD----RSVNISDHKPIICYFKL 391
Query: 121 E 121
+
Sbjct: 392 K 392
>gi|218699162|ref|YP_002406791.1| putative metal-dependent hydrolase [Escherichia coli IAI39]
gi|218369148|emb|CAR16903.1| putative metal-dependent hydrolase [Escherichia coli IAI39]
Length = 253
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--STSAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|332522573|ref|ZP_08398825.1| exodeoxyribonuclease III [Streptococcus porcinus str. Jelinkova
176]
gi|332313837|gb|EGJ26822.1| exodeoxyribonuclease III [Streptococcus porcinus str. Jelinkova
176]
Length = 275
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 38/142 (26%), Gaps = 25/142 (17%)
Query: 2 LSQQG---EWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
L + EW K+A+ ++ P + GD+N I + + P
Sbjct: 136 LRRLADRQEWDIKYAEYLAQLDAQKPVLATGDYNVAHKEIDLANPASNRRSPGFTDEERA 195
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ + + + +L N +
Sbjct: 196 GFTALLEKGFTDTFRHLHGDIPNVYTWWAQRSKTSKMNNTGWRIDYWLTSNRVADKVLKS 255
Query: 99 SDLDTRRSKLSTHCPLTIEYDF 120
LD+ + H P+ +E D
Sbjct: 256 EMLDSGARQ--DHTPILLEIDL 275
>gi|330961652|gb|EGH61912.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 379
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 33/132 (25%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPDGLLIRFPQ 57
+Q + D+ G P++I GDFN + L
Sbjct: 247 QKQIAATETLLDKLEGGGTPWLIGGDFNLLPLGQYQRLPEPQRLGYAADSELHKLWEKYP 306
Query: 58 EKEST--------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
S + R + DR + VS DT +S
Sbjct: 307 MIPSNAESSGIDRSKWLTRFPNDSRINGPDRTVDYLFYSPALKRVSARVRRDDTLL--IS 364
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 365 DHLPVIGRFLLP 376
>gi|322696797|gb|EFY88584.1| DNA lyase [Metarhizium acridum CQMa 102]
Length = 634
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 18/149 (12%), Positives = 31/149 (20%), Gaps = 39/149 (26%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
E L + G ++AGD N + + F Q
Sbjct: 174 EALAARIRNLVAEGKEVILAGDLNVIRSEMDSTNVMENLRKENMTIDEWISLPTRRIFNQ 233
Query: 45 KMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKNFLIDN 89
+ ++ + +E+ K + L N
Sbjct: 234 LIFEGSIVGDRDEGRETPVLWDLCRCFHPSRLGMNTCWDTKKNTRPANNGSRIDYILCSN 293
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S S HCP+
Sbjct: 294 GIKDW--FTSANIQEGLMGSDHCPVFATI 320
>gi|300857881|ref|YP_003782864.1| hypothetical protein cpfrc_00464 [Corynebacterium
pseudotuberculosis FRC41]
gi|300685335|gb|ADK28257.1| hypothetical protein cpfrc_00464 [Corynebacterium
pseudotuberculosis FRC41]
gi|302205608|gb|ADL09950.1| Putative exodeoxyribonuclease [Corynebacterium pseudotuberculosis
C231]
gi|302330161|gb|ADL20355.1| Putative exodeoxyribonuclease [Corynebacterium pseudotuberculosis
1002]
gi|308275844|gb|ADO25743.1| Putative exodeoxyribonuclease [Corynebacterium pseudotuberculosis
I19]
Length = 299
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 7/67 (10%), Positives = 16/67 (23%)
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R + R ++ D + + + S
Sbjct: 230 DVARRLHPQDAPYTWWTYRGQAFDTNAGWRIDYQAATQAMLDRAEKTWVDKAEAYDLRWS 289
Query: 110 THCPLTI 116
H PL++
Sbjct: 290 DHSPLSV 296
>gi|149409019|ref|XP_001506333.1| PREDICTED: similar to Ribosomal protein S2 [Ornithorhynchus
anatinus]
Length = 315
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 12/120 (10%), Positives = 36/120 (30%), Gaps = 5/120 (4%)
Query: 4 QQGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D K + GDFN + + + ++ + +
Sbjct: 197 KEIDALYDVYLDIISKWNMDNILFMGDFNAGCSYVSASSWSAIRLRTNPKFQWLISDDV- 255
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL--DTRRSKLSTHCPLTIEYD 119
V + ++ + S ++++ +S H P+ + +
Sbjct: 256 DTTVTSTYCPYDRIVASGKKLRSSIGPGSAFPFHFEKAYKLKQEMALAVSDHYPVEVTIE 315
>gi|148228766|ref|NP_001090620.1| deoxyribonuclease I-like 1 [Xenopus laevis]
gi|120538429|gb|AAI29561.1| LOC100036866 protein [Xenopus laevis]
Length = 297
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 37/119 (31%), Gaps = 2/119 (1%)
Query: 3 SQQGEWLKK-WADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
S++ + L + D ++ + GDFN + + ++ D +
Sbjct: 148 SREIDALYDVFLDIMVRWDAKNILFLGDFNAACSYLSRKKKRTLRLYKDERFHWLIDDSA 207
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
T N + + + + + + ++S H P+ ++ +
Sbjct: 208 DTTVRGSTNCAYDRIVAYGEQLMTNVQTAGVYNFTKELGLSEIQALEISDHYPVELDLN 266
>gi|109130906|ref|XP_001092143.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2 [Macaca
mulatta]
Length = 518
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 29/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLL 52
L+ A+ + G +I GD N I D + G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 53 IRFPQEKESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + L D + I ++ S
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVLGDRTLVIDTFRAS-F 294
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 295 LLPEVMGSDHCPVGAVLS 312
>gi|257870600|ref|ZP_05650253.1| endonuclease/exonuclease/phosphatase [Enterococcus gallinarum EG2]
gi|257804764|gb|EEV33586.1| endonuclease/exonuclease/phosphatase [Enterococcus gallinarum EG2]
Length = 255
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 12/122 (9%), Positives = 28/122 (22%), Gaps = 14/122 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L + + + +P ++ GD N + +
Sbjct: 147 ILERLADKIAA---------LPVLLMGDLNAEAVER-VHESLQTIFVNAKEQNEKGHYGP 196
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + F I+ S H PL + F
Sbjct: 197 RGSYQNFDYQ---LPWNQLEEIDYIY-TKGFRIIKTGCLTDSCDGRFPSDHFPLEADLRF 252
Query: 121 EK 122
++
Sbjct: 253 DE 254
>gi|66046507|ref|YP_236348.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
syringae B728a]
gi|63257214|gb|AAY38310.1| Endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
syringae B728a]
Length = 261
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 32/118 (27%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + L + +I G P ++AGDFN + + K
Sbjct: 160 RQQLKLLNELM-ARIPEGEPVIVAGDFNDWRQRADA-SLQGSGLHEVFVERFGAPAKSFP 217
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N+ S S S LS H PL +E
Sbjct: 218 ARW------------PLLCLDRIYVRNATSHRPKVLSSRPW--SHLSDHAPLAVELTL 261
>gi|305679776|ref|ZP_07402586.1| putative exodeoxyribonuclease III [Corynebacterium matruchotii ATCC
14266]
gi|305660396|gb|EFM49893.1| putative exodeoxyribonuclease III [Corynebacterium matruchotii ATCC
14266]
Length = 299
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 9/70 (12%), Positives = 19/70 (27%)
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R + R ++ + D + + ++ S
Sbjct: 230 DVARRLHPDDAPYTWWTYRGRAFGNDAGWRIDYQAATKSMFERATTMRVDKAVDHAARWS 289
Query: 110 THCPLTIEYD 119
H PLT+ Y
Sbjct: 290 DHAPLTVWYQ 299
>gi|183599926|ref|ZP_02961419.1| hypothetical protein PROSTU_03446 [Providencia stuartii ATCC 25827]
gi|188022200|gb|EDU60240.1| hypothetical protein PROSTU_03446 [Providencia stuartii ATCC 25827]
Length = 301
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 20/127 (15%), Positives = 32/127 (25%), Gaps = 11/127 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPF-VIAGDFNRKINSIGDTDDFWQ-------KMDPDGLLIR 54
Q L WA+ I ++ GD N S +P
Sbjct: 177 KAQLTQLINWAETSITEDRQITILGGDLNINYGSEEYEQALDIIGWGEPHHFNPRPSWDF 236
Query: 55 FPQEKESTCNVIKRNKSSLDYFV-IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
R LDY + + S + Y+ ++ S H P
Sbjct: 237 STNNVIREAYPDTRQSWHLDYIFAKNMRSIKQQTRVIKSKIGYNYNNKVFFDY--SDHYP 294
Query: 114 LTIEYDF 120
+ E +
Sbjct: 295 VVAEIEL 301
>gi|148664803|gb|EDK97219.1| deoxyribonuclease I, isoform CRA_a [Mus musculus]
Length = 301
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 5/119 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D K G + GDFN + + + ++ + + +
Sbjct: 182 EIDALYDVYLDVWQKWGLEDIMFMGDFNAGCSYVTSSQWSSIRLRTSPIFQWLIPDS-AD 240
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEYD 119
V + + V + ++ NS + + +S H P+ +
Sbjct: 241 TTVTSTHCAYDRIVVAGALLQAAVVPNSAVPFDFQAEYGLSNQLAEAISDHYPVEVTLR 299
>gi|224074603|ref|XP_002304397.1| predicted protein [Populus trichocarpa]
gi|222841829|gb|EEE79376.1| predicted protein [Populus trichocarpa]
Length = 356
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 40/138 (28%), Gaps = 16/138 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ--- 57
+LS+ + K+ +K + ++AGDFN L +
Sbjct: 220 LLSRVAQ-FKELVSEKYECMPSVILAGDFNSIPGDKVYEYLVSGSSSSASLAECLDELPI 278
Query: 58 ----------EKESTCNVIKRNKSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDLDTRR 105
+ N ++LDY D++ + S +
Sbjct: 279 PLCSVYGSTRGEPPFTNCTPDFTNTLDYIFFVPDDQIKPLSFLELPEANSPNVLGGLPNY 338
Query: 106 SKLSTHCPLTIEYDFEKG 123
S H P+ E++ +
Sbjct: 339 YHPSDHLPIGAEFEITRE 356
>gi|222150158|ref|YP_002551115.1| Metal-dependent exonuclease protein [Agrobacterium vitis S4]
gi|221737140|gb|ACM38103.1| Metal-dependent exonuclease protein [Agrobacterium vitis S4]
Length = 286
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 33/117 (28%), Gaps = 11/117 (9%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-------QKMDPDGLLIRFPQEKEST 62
+++A + F++ GDFN + S + + D L + +
Sbjct: 174 QEFALPQPPLPEDFLLMGDFNMQPESPEYREMVGTIDAYYGRTARADAPLDALARLGKLN 233
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + D + + + S H P+ +E D
Sbjct: 234 AGSYSWEEVGKPDMRMHLDYCFLSGSLAHRLKAASVDTDAVG----SDHFPVWVELD 286
>gi|326430956|gb|EGD76526.1| hypothetical protein PTSG_07643 [Salpingoeca sp. ATCC 50818]
Length = 291
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 33/128 (25%), Gaps = 17/128 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L KWA +P+++AGDFN K + P+
Sbjct: 163 LVKWA-HNTANSLPYIVAGDFNIKPKDPCYDMIVNGFIHPEVKGALATPAATFNEVPKAL 221
Query: 69 NKSSLDYFVIDRD-----------NKNFLIDNSFSIVSYDQSDLDTRRSKL-----STHC 112
+ ++ + + + + + + + S H
Sbjct: 222 RSALREHHGREPEFTNWTHEFQDTLDYIFLSDEWVVRDACDPESFPEGPYPSERVVSDHI 281
Query: 113 PLTIEYDF 120
PL D
Sbjct: 282 PLWATLDL 289
>gi|297697839|ref|XP_002826049.1| PREDICTED: deoxyribonuclease-1-like 2-like [Pongo abelii]
Length = 101
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 3/98 (3%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
+ GDFN + + + D ++ + + + V + +
Sbjct: 1 MLFLGDFNADCSYVREQDWAAIRLRSSEVFKWLIPDS-ADTTVGNSDCAYDRIVACGARL 59
Query: 83 KNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPLTIEY 118
+ L S ++ + + T+ +S H P+ +
Sbjct: 60 RRSLKPQSATVHDFQEEFALDQTQALAISDHFPVEVTL 97
>gi|256839412|ref|ZP_05544921.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256738342|gb|EEU51667.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 306
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 35/134 (26%), Gaps = 21/134 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----GLLIRFPQE 58
++ + + + + +P ++ GDFN S + D P
Sbjct: 168 AESAKLILEKIKE-FPKKLPAILTGDFNVDQTSESYQLLDGSGIMRDSYEIADFRYAPNG 226
Query: 59 KESTCNVIKRNKSSLDYFV----------------IDRDNKNFLIDNSFSIVSYDQSDLD 102
+ + ++ S +D+ + K + S
Sbjct: 227 TFNGFHPDRKTDSRIDHLFLTKEFEVKKYGFLTDTYRSEAKESARKEQNGNFPKEVSLSK 286
Query: 103 TRRSKLSTHCPLTI 116
S H P+ I
Sbjct: 287 YEARTPSDHFPVMI 300
>gi|229587662|ref|YP_002869781.1| putative endonuclease/exonuclease/phosphatase family protein
[Pseudomonas fluorescens SBW25]
gi|229359528|emb|CAY46369.1| putative endonuclease/exonuclease/phosphatase family protein
[Pseudomonas fluorescens SBW25]
Length = 292
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 22/111 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N N + L + PQ + + + +
Sbjct: 184 AYIRELIGGYKHQVLMGDMNTHANDLLLNSPL------RDLGLLAPQAEATFPSWRPQR- 236
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ L+ + ++ S +S H P+ +E
Sbjct: 237 ----------CLDHILLSPTLTLESVQVLAQP-----ISDHLPVAVEIRLP 272
>gi|330976904|gb|EGH76929.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 198
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 33/132 (25%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL----------- 51
+Q + D+ G P++I GDFN Q++
Sbjct: 66 QKQVAATETQLDKLESGGTPWLIGGDFNLLPLGQYQRLPEQQRLGYAADSELHELWDKYP 125
Query: 52 --LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R + DR S VS DT +S
Sbjct: 126 MIPDNAESSGIDRSKWLTRFPNDSRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--IS 183
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 184 DHLPVIGRFLLP 195
>gi|294651509|ref|ZP_06728821.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
gi|292822597|gb|EFF81488.1| conserved hypothetical protein [Acinetobacter haemolyticus ATCC
19194]
Length = 459
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 12/132 (9%)
Query: 2 LSQ-QGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQE 58
L Q Q + +++ +Q+ I + ++ GDFN + D D ++ +
Sbjct: 327 LRQVQFQQIRQLINQQNIPSFDAVLMGGDFNVNKLLWPQDYQDMLTNLNATAPVSTGYTA 386
Query: 59 KESTCNVI---------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ LDY V +++ + + +D LS
Sbjct: 387 STFDPRINKLAGAAGSGGTTVEYLDYVVSSNNHRQPTQSRNDVRILRSAADPLFMTWDLS 446
Query: 110 THCPLTIEYDFE 121
H P+ +++
Sbjct: 447 DHFPVMGHFNYN 458
>gi|39971297|ref|XP_367039.1| hypothetical protein MGG_10669 [Magnaporthe oryzae 70-15]
gi|145012239|gb|EDJ96895.1| hypothetical protein MGG_10669 [Magnaporthe oryzae 70-15]
Length = 618
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 31/119 (26%), Gaps = 3/119 (2%)
Query: 4 QQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ ++ + + + AGDFN I D + +E
Sbjct: 497 QQATVTGEFIAKILAEDPEAQVIAAGDFNEFIPVSPLQTFMKVSGLLDLDEVVEMAPEER 556
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNF-LIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N LD+ + + ++S H P ++
Sbjct: 557 YSYLFDMNTQQLDHTFVSPSLSVRTPCSRRSHFQHLHVNTWSDTAGEVSDHDPSVGRFN 615
>gi|329964252|ref|ZP_08301353.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
fluxus YIT 12057]
gi|328525557|gb|EGF52600.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
fluxus YIT 12057]
Length = 369
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 22/111 (19%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ GDFN S Q D +
Sbjct: 268 QADTIAHEIAA--SRHPYIIVCGDFNDTPISYAHHTISRQLND-------AFTQSGRGLG 318
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N L + + S H P+
Sbjct: 319 ISYNQNKFYF------RIDNILTSRNLRTHNCTVDRSIKD----SDHYPIW 359
>gi|260662786|ref|ZP_05863680.1| metal-dependent hydrolase [Lactobacillus fermentum 28-3-CHN]
gi|260552867|gb|EEX25866.1| metal-dependent hydrolase [Lactobacillus fermentum 28-3-CHN]
Length = 290
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 16/133 (12%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSI-----------GDT-DDFWQKMDP 48
M Q + L ++ ++ GD+N + D Q M
Sbjct: 162 MRKAQMKLLNAVIERAYLASNYVIVGGDYNHALGKDMLTHFASQEKVPDWVSVLDQSMVA 221
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
G + Q +E+ V + + FL+ N+ + + + +
Sbjct: 222 KGFTMVKAQNRETVPTVRSTDLAYRSGVNYLTVCDGFLVSNNVTATATNINTDFDYA--- 278
Query: 109 STHCPLTIEYDFE 121
H P+ + + +
Sbjct: 279 -DHNPVKLTFILK 290
>gi|118379737|ref|XP_001023034.1| Endonuclease/Exonuclease/phosphatase family protein [Tetrahymena
thermophila]
gi|89304801|gb|EAS02789.1| Endonuclease/Exonuclease/phosphatase family protein [Tetrahymena
thermophila SB210]
Length = 345
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 18/122 (14%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE-- 60
+Q + L D + +I GDFN + +++ + +
Sbjct: 235 EKQSQELVDMIDPIEEENKLIIIGGDFNSPLRQFNKGKP-FREYQDPFMFKYLWPHRNTC 293
Query: 61 ---STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ L + + + I S + + S H P+ +
Sbjct: 294 VGDTLGYFGLSAFDYLYFKNHHGYHLDSFICKSQACTGF------------SDHFPIQVN 341
Query: 118 YD 119
Sbjct: 342 IS 343
>gi|172058551|ref|YP_001815011.1| endonuclease/exonuclease/phosphatase [Exiguobacterium sibiricum
255-15]
gi|171991072|gb|ACB61994.1| Endonuclease/exonuclease/phosphatase [Exiguobacterium sibiricum
255-15]
Length = 915
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 11/121 (9%)
Query: 3 SQQGEW--LKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
+ ++ + ++ V+ GD N S + + +
Sbjct: 714 QRHAIAGIVQNFVNELETEVKDSNVVVLGDLNDFQFSKTLDILKGDNLWNTVEDL---PK 770
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
E V N LD+ +I ++ K + + +I SD S H P I
Sbjct: 771 SERYSYVYNGNAQVLDHVLISKNLKPYTSSDIVNI----NSDYMEADGSASDHDPAIISI 826
Query: 119 D 119
Sbjct: 827 Q 827
>gi|269119815|ref|YP_003307992.1| endonuclease/exonuclease/phosphatase [Sebaldella termitidis ATCC
33386]
gi|268613693|gb|ACZ08061.1| Endonuclease/exonuclease/phosphatase [Sebaldella termitidis ATCC
33386]
Length = 244
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 33/116 (28%), Gaps = 22/116 (18%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + D PF+IAGDFN + + +
Sbjct: 149 KQIVELYEVID---SCTKPFIIAGDFNLFWGEEEIELFLRALNLKNAN----IKNIPTYP 201
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + I + +LS H PL ++++
Sbjct: 202 SWKPK-----------KVLDFIIYSEGIKINDFKVLT----DVRLSDHLPLYVDFE 242
>gi|86132950|ref|ZP_01051540.1| endonuclease/exonuclease/phosphatase family protein [Dokdonia
donghaensis MED134]
gi|85816468|gb|EAQ37656.1| endonuclease/exonuclease/phosphatase family protein [Dokdonia
donghaensis MED134]
Length = 361
Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 25/104 (24%), Gaps = 16/104 (15%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
K +P ++ GDFN + N + +
Sbjct: 239 KRTLPVIVMGDFNDV-------AWSRTTSLFRKVSKLLDPRIGRGFY----NTFNAKNIL 287
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + L+ S H P+ E +E
Sbjct: 288 MRWPLDHLFTSQE-----FRVKKLERTGHIKSDHFPVYSELTYE 326
>gi|283784549|ref|YP_003364414.1| endonuclease/exonuclease/phosphatase [Citrobacter rodentium ICC168]
gi|282948003|emb|CBG87567.1| putative endonuclease/exonuclease/phosphatase [Citrobacter
rodentium ICC168]
Length = 253
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 33/119 (27%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L W + + G P V+AGDFN + D +
Sbjct: 150 RQAQLKMLADWVNA-LPDGEPVVVAGDFNDWRQKASL--PLKKTAGLDEIFTHAH----- 201
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + + N+ S LS H PL+ E
Sbjct: 202 -----GRPARTFPVSLPLLPLDRIYVKNA--NTSSPTVLPLRSWRHLSDHAPLSAEIHL 253
>gi|255557747|ref|XP_002519903.1| RNA exonuclease NGL1, putative [Ricinus communis]
gi|223540949|gb|EEF42507.1| RNA exonuclease NGL1, putative [Ricinus communis]
Length = 443
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 37/141 (26%), Gaps = 22/141 (15%)
Query: 5 QGEWLKKWADQ-------KIKTGIPFVIAGDFNRKINSIGDT---------DDFWQKMDP 48
Q ++L Q + + +AGDFN + +D
Sbjct: 303 QAKYLLSRLSQFKILVSNQFECSPSLFLAGDFNSIPGDKVYQYVVSGNSSFAPTVECLDD 362
Query: 49 DGL----LIRFPQEKESTCNVIKRNKSSLDYFVIDRD--NKNFLIDNSFSIVSYDQSDLD 102
+ + + + N ++LDY D S D
Sbjct: 363 LPIPLCSVYGHTRGEPPFTNCTPDFTNTLDYIFFSPDEKITPISFLELPEGNSPDVLGGL 422
Query: 103 TRRSKLSTHCPLTIEYDFEKG 123
S H P+ E++ +
Sbjct: 423 PNFYHPSDHLPIGAEFEISRE 443
>gi|83815332|ref|YP_444975.1| endonuclease/exonuclease/phosphatase family protein [Salinibacter
ruber DSM 13855]
gi|83756726|gb|ABC44839.1| endonuclease/exonuclease/phosphatase family [Salinibacter ruber DSM
13855]
Length = 386
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 28/105 (26%), Gaps = 4/105 (3%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST-CNVIKRNKSSLDY 75
+ PF++ GD N + + + + + + S + D
Sbjct: 277 LHDDAPFLVMGDLNADPDDASIFRNAIRHLIGHERVDGGVVPEASPARQADYPDLDPDDT 336
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSD---LDTRRSKLSTHCPLTIE 117
L + ++ +S H P+ ++
Sbjct: 337 SRWGARIDYVLPAATVAVDDAGVWRPAPARVPDVPVSDHFPVWVD 381
>gi|284033951|ref|YP_003383882.1| endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
gi|283813244|gb|ADB35083.1| Endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
Length = 293
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 11/107 (10%), Positives = 29/107 (27%), Gaps = 12/107 (11%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
G V+ GD N + + ++ P + N +
Sbjct: 195 PAGANQVLVGDLNAEPQAAE-----LARLWPAMTDAWTAAPITTG------NPLTYPAAT 243
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ + + ++ + + S H P+ + +G+
Sbjct: 244 PVKRIDYITVSDGVGVLRAEVPASPALLA-ASDHRPVVADLALARGS 289
>gi|326929304|ref|XP_003210807.1| PREDICTED: deoxyribonuclease-1-like 2-like [Meleagris gallopavo]
Length = 278
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 3/100 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
V GDFN + + +D ++ + + + V K + + V
Sbjct: 178 DNIVFLGDFNADCSYVKQSDWASIRLRSSDVFKWLIPDS-ADTTVGKSDCAYDRIVVCGA 236
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
K ++ NS ++ ++ + + L S H P+ ++
Sbjct: 237 KLKRSIVPNSATVYNFQHAFQLEQEEALAVSDHYPVEVKL 276
>gi|326801323|ref|YP_004319142.1| endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
gi|326552087|gb|ADZ80472.1| Endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
Length = 338
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 41/132 (31%), Gaps = 13/132 (9%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNR--KINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ L + + ++ GD N D Q D + ++
Sbjct: 209 RKNMIQLSNYIKEH-SGDRAVIVMGDLNAHFCYEHDNIRDLLAQNGLKDAWVTLKAKDSF 267
Query: 61 STCNVI--------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ S+D + L N++ + ++ + LS HC
Sbjct: 268 PAFKKFVKEDILKLTDDCESIDKILFRSSADLLLTPNAYRFENEKFNNKE--GIPLSDHC 325
Query: 113 PLTIEYDFEKGN 124
P+++ + +++ +
Sbjct: 326 PVSLSFSWQQRS 337
>gi|325845943|ref|ZP_08169141.1| endonuclease/exonuclease/phosphatase family protein [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325481849|gb|EGC84881.1| endonuclease/exonuclease/phosphatase family protein [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 348
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 41/120 (34%), Gaps = 3/120 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + +++ K G ++ GDFN++++ + + +
Sbjct: 229 QTKEIIDFVNKEYKKGNYVLVGGDFNQELSGKYKKLPEGIWNPSPFPKEMLTKNIKLYYD 288
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT---RRSKLSTHCPLTIEYDFE 121
+ D +D ID + + + T + S H P+ +E+ +
Sbjct: 289 KNGKTSVVNDKPYTGKDAYLSTIDGFLATDNIKIKTIKTQAKENFQYSDHNPVVMEFVLK 348
>gi|242058129|ref|XP_002458210.1| hypothetical protein SORBIDRAFT_03g029010 [Sorghum bicolor]
gi|241930185|gb|EES03330.1| hypothetical protein SORBIDRAFT_03g029010 [Sorghum bicolor]
Length = 1150
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 1/111 (0%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-FWQKMDPDGLLIRFPQEKESTCNV 65
++L + + P++IAGDFN + + ++M E
Sbjct: 993 DFLAELLECNPGPQSPWLIAGDFNLIYQADDKNNLNLNRRMMGKFRRALDDCELFELTLQ 1052
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+R S + + + N+ VS+ L + S HCPL +
Sbjct: 1053 NRRYTWSNERSNPTLVRLDRVFCNAEWEVSFPNFALSALSTGASDHCPLFL 1103
>gi|148675568|gb|EDL07515.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_c [Mus musculus]
Length = 543
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 29/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKI--------------NSIGDTDDFWQKMDPDGLL 52
L+ A+ + G +I GD N + G
Sbjct: 202 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDE 261
Query: 53 IRFPQEKESTCNVI-----------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
S + L D + I ++ Q+
Sbjct: 262 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVLGDRALVIDTF-QASF 320
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+ +
Sbjct: 321 LLPEVMGSDHCPVGAVLN 338
>gi|148675567|gb|EDL07514.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_b [Mus musculus]
Length = 402
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 29/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKI--------------NSIGDTDDFWQKMDPDGLL 52
L+ A+ + G +I GD N + G
Sbjct: 61 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDE 120
Query: 53 IRFPQEKESTCNVI-----------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
S + L D + I ++ Q+
Sbjct: 121 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVLGDRALVIDTF-QASF 179
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+ +
Sbjct: 180 LLPEVMGSDHCPVGAVLN 197
>gi|148675569|gb|EDL07516.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_d [Mus musculus]
Length = 530
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 29/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKI--------------NSIGDTDDFWQKMDPDGLL 52
L+ A+ + G +I GD N + G
Sbjct: 189 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDE 248
Query: 53 IRFPQEKESTCNVI-----------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
S + L D + I ++ Q+
Sbjct: 249 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVLGDRALVIDTF-QASF 307
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+ +
Sbjct: 308 LLPEVMGSDHCPVGAVLN 325
>gi|26354044|dbj|BAC40652.1| unnamed protein product [Mus musculus]
gi|123223480|emb|CAM21422.1| apurinic/apyrimidinic endonuclease 2 [Mus musculus]
Length = 523
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 29/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKI--------------NSIGDTDDFWQKMDPDGLL 52
L+ A+ + G +I GD N + G
Sbjct: 182 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDE 241
Query: 53 IRFPQEKESTCNVI-----------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
S + L D + I ++ Q+
Sbjct: 242 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVLGDRALVIDTF-QASF 300
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+ +
Sbjct: 301 LLPEVMGSDHCPVGAVLN 318
>gi|73921677|sp|Q68G58|APEX2_MOUSE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=APEX nuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2; Short=AP
endonuclease 2
gi|51259055|gb|AAH78633.1| Apurinic/apyrimidinic endonuclease 2 [Mus musculus]
Length = 516
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 29/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKI--------------NSIGDTDDFWQKMDPDGLL 52
L+ A+ + G +I GD N + G
Sbjct: 175 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDE 234
Query: 53 IRFPQEKESTCNVI-----------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
S + L D + I ++ Q+
Sbjct: 235 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVLGDRALVIDTF-QASF 293
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+ +
Sbjct: 294 LLPEVMGSDHCPVGAVLN 311
>gi|62389560|ref|YP_224962.1| exodeoxyribonuclease [Corynebacterium glutamicum ATCC 13032]
gi|41324894|emb|CAF19376.1| PUTATIVE EXODEOXYRIBONUCLEASE [Corynebacterium glutamicum ATCC
13032]
Length = 319
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 14/101 (13%), Positives = 21/101 (20%), Gaps = 2/101 (1%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTD--DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
AGDF ++ G D P+ R K+
Sbjct: 216 DEATQVAGAGDFFGAVDYEGTRRREATTDPAWFDVARRLQPEGDGPYTWWTYRGKAFDTG 275
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
D + + S H PL +
Sbjct: 276 AGWRIDYQAATAAMLERAERSWVDKAAAYDLRWSDHSPLNV 316
>gi|21541818|ref|NP_084219.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Mus musculus]
gi|19912820|dbj|BAB88654.1| apurinic/apyrimidinic endonuclease 2 [Mus musculus]
gi|22830557|dbj|BAC11807.1| apurinic/apyrimidinic endonuclease 2 [Mus musculus]
gi|26341548|dbj|BAC34436.1| unnamed protein product [Mus musculus]
gi|123223479|emb|CAM21421.1| apurinic/apyrimidinic endonuclease 2 [Mus musculus]
gi|148675566|gb|EDL07513.1| apurinic/apyrimidinic endonuclease 2, isoform CRA_a [Mus musculus]
Length = 516
Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 29/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKI--------------NSIGDTDDFWQKMDPDGLL 52
L+ A+ + G +I GD N + G
Sbjct: 175 RLLQMRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGDE 234
Query: 53 IRFPQEKESTCNVI-----------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
S + L D + I ++ Q+
Sbjct: 235 AGPHIGLFMDSYRYLHPKQQRAFTCWSVVSGARHLNYGSRLDYVLGDRALVIDTF-QASF 293
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+ +
Sbjct: 294 LLPEVMGSDHCPVGAVLN 311
>gi|308049374|ref|YP_003912940.1| endonuclease/exonuclease/phosphatase [Ferrimonas balearica DSM
9799]
gi|307631564|gb|ADN75866.1| Endonuclease/exonuclease/phosphatase [Ferrimonas balearica DSM
9799]
Length = 319
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 15/132 (11%)
Query: 2 LSQQGEWLK---KWADQKIKTGIPFVIAGDFNRKINSIGD-----TDDFWQKMDPDGLLI 53
L + E +++++ +P VI GDFN + S ++ ++ L
Sbjct: 186 LQRSAEAAMLCLDLMNEQLRDPLPSVILGDFNGDLGSDLLTLLQGGEEDAYRLQDAHDLA 245
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD------LDTRRSK 107
+ +++ T N S LD+ ++ + + D +
Sbjct: 246 LYQGDRDPTHYW-GANGSVLDHILLSAQFNAGFGQSLAQVDEVVVWDRHLRFNDAEQDRM 304
Query: 108 LSTHCPLTIEYD 119
S H P+
Sbjct: 305 ASDHAPVLARIS 316
>gi|77164511|ref|YP_343036.1| endonuclease/exonuclease/phosphatase [Nitrosococcus oceani ATCC
19707]
gi|254433656|ref|ZP_05047164.1| endonuclease/exonuclease/phosphatase family [Nitrosococcus oceani
AFC27]
gi|76882825|gb|ABA57506.1| Endonuclease/exonuclease/phosphatase [Nitrosococcus oceani ATCC
19707]
gi|207089989|gb|EDZ67260.1| endonuclease/exonuclease/phosphatase family [Nitrosococcus oceani
AFC27]
Length = 248
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 28/116 (24%), Gaps = 12/116 (10%)
Query: 6 GEWLK--KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ L K + P + GD N + + GL F
Sbjct: 141 AQALNTIKMLRRLATQSSPLLFMGDLN------DHYSPL-KILQEGGLTDCFTALGRIPQ 193
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ Y + L ++ D D S H PL + Y
Sbjct: 194 ITR---PAYPTYVHTPQVVDWVLHWGPLQPMTCDVVDFFVGDIAPSDHKPLLVTYQ 246
>gi|327281562|ref|XP_003225516.1| PREDICTED: hypothetical protein LOC100561123 [Anolis carolinensis]
Length = 2290
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 15/109 (13%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQ------KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
++ GDFN ++S DT + I+ +E + N++ DY
Sbjct: 1 MILLGDFNGILDSNLDTSKKIKSRSYEKARLLPNNFIKLKEEFDLHDAWRYHNQNKRDYT 60
Query: 77 VI------DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ NS + + + S HCP+TI +
Sbjct: 61 FYSDRHKTWARIDMIWLSNSLCTRTEEIKIQPRDK---SDHCPITISIN 106
>gi|325286474|ref|YP_004262264.1| Endonuclease/exonuclease/phosphatase [Cellulophaga lytica DSM 7489]
gi|324321928|gb|ADY29393.1| Endonuclease/exonuclease/phosphatase [Cellulophaga lytica DSM 7489]
Length = 311
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 19/138 (13%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L + ++ +++ GDFN S + EK S
Sbjct: 174 EAAKVLINFMAKIEEKNPNPNYIVMGDFNDSPKSDSIQTLMDTNKFYNPSEHLLTFEKGS 233
Query: 62 TCN-----------VIKRNKSSLDY------FVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + I ++ D F +
Sbjct: 234 ASYKRKWSLFDQIIISHSFLNYEKGTHSFLEANIFDEHFLTEFDGKFKGTPFRTYVGRKY 293
Query: 105 RSKLSTHCPLTIEYDFEK 122
S H P+ I+ + +
Sbjct: 294 VGGYSDHFPVFIQLKYNE 311
>gi|325106148|ref|YP_004275802.1| Endonuclease/exonuclease/phosphatase [Pedobacter saltans DSM 12145]
gi|324974996|gb|ADY53980.1| Endonuclease/exonuclease/phosphatase [Pedobacter saltans DSM 12145]
Length = 372
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 31/115 (26%), Gaps = 21/115 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q E LK + D PFVI GDFN S + +
Sbjct: 274 AKQVEILKSYTD---SCKTPFVIMGDFNDTPVSYSVNQISKDLKNS-----FIEKGVGIG 325
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ L F I +Y S H P+ ++
Sbjct: 326 RTYNGDFPNFQ--------IDYILTTKDFDIHTYKIIKKAY-----SDHYPVRVD 367
>gi|332637180|ref|ZP_08416043.1| exodeoxyribonuclease III [Weissella cibaria KACC 11862]
Length = 276
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 37/137 (27%), Gaps = 27/137 (19%)
Query: 3 SQQG--EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQK 45
+Q + + + + P + +GDFN I + +
Sbjct: 138 DRQAWDDAYRAYIAD-LDAKKPVIFSGDFNVAHQEIDLKNPKTNHKSAGFTDEEREKFGL 196
Query: 46 MDPDGLLIRFPQ----EKESTCNVIK-RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ G F + + S ++ D + + ++ D
Sbjct: 197 LLDAGFTDTFRYLNPDQTGVYTWWAQISKTSKINNSGWRIDYYLASNRLNDQLATFSVVD 256
Query: 101 LDTRRSKLSTHCPLTIE 117
R+ H P+ +E
Sbjct: 257 TGARQ----DHAPIKLE 269
>gi|323494918|ref|ZP_08100010.1| putative phospholipase C [Vibrio brasiliensis LMG 20546]
gi|323310882|gb|EGA64054.1| putative phospholipase C [Vibrio brasiliensis LMG 20546]
Length = 441
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 38/128 (29%), Gaps = 11/128 (8%)
Query: 3 SQQGEWLKKW-ADQKIKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + +++ I V +GDFN GD + E
Sbjct: 314 QRQFKQMRQLALSLNISQNETVVYSGDFNVNKRKFPGDYQQMITNLSAIEPDYSGYTEST 373
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ ++ ++ N + I S + + +D + LS H
Sbjct: 374 FDPRINDFAGEAMSGGENVEYLDYVMVSNEYQIKSSNDNRVDVPRSTGERLWKHYNLSDH 433
Query: 112 CPLTIEYD 119
P+T +
Sbjct: 434 FPVTAVIE 441
>gi|153832651|ref|ZP_01985318.1| endonuclease/exonuclease/phosphatase [Vibrio harveyi HY01]
gi|148871217|gb|EDL70095.1| endonuclease/exonuclease/phosphatase [Vibrio harveyi HY01]
Length = 451
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 10/122 (8%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC--------- 63
++I + AGDFN NS +
Sbjct: 330 LTKQIPADEAVIYAGDFNIDKNSDFMEYLLMLATLEVDPPAYLGYTPATFEPKINAYASA 389
Query: 64 -NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
LDY ++ +++ + + + ++ LS H + + F++
Sbjct: 390 NYSGGEKSEYLDYVLVSSEHRRAFENTNTVKLRQRVTEDTWGEWHLSDHFSVVGNFVFDE 449
Query: 123 GN 124
N
Sbjct: 450 RN 451
>gi|284031870|ref|YP_003381801.1| endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
gi|283811163|gb|ADB33002.1| Endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
Length = 264
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 34/116 (29%), Gaps = 19/116 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q E L + G V+ GD N S + +D GL T
Sbjct: 168 KTQAERLADLVEHAASPGDLIVVCGDLNLLPGSE-----TFAVLDKLGLTDLVGTADTRT 222
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
Y R L+ + ++ +++ +S H PL ++
Sbjct: 223 S----------IYPKPTRHASYLLVSDPGAVKTFEAPPHPE----VSDHRPLILDL 264
>gi|254418585|ref|ZP_05032309.1| endonuclease/exonuclease/phosphatase family [Brevundimonas sp.
BAL3]
gi|196184762|gb|EDX79738.1| endonuclease/exonuclease/phosphatase family [Brevundimonas sp.
BAL3]
Length = 317
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 27/114 (23%), Gaps = 20/114 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L ++ P ++AGDFN + + +
Sbjct: 219 QVMALTA--RREKAAPHPTIVAGDFNSVSS--------ARIGRQIQSDMNLSPAPGFPGT 268
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + +++S S H P+ E+
Sbjct: 269 WPSRLPAFA-----GITIDQVYRSPDLALISRRI-----GEPTGSDHYPVVTEF 312
>gi|124265241|ref|YP_001019245.1| hypothetical protein Mpe_A0048 [Methylibium petroleiphilum PM1]
gi|124258016|gb|ABM93010.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
Length = 256
Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 32/118 (27%), Gaps = 14/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
S+Q L + ++++ P V+AGDFN GL F ++
Sbjct: 153 SRQLALLCELVEREVPADAPLVVAGDFNDWR-----RSAHRVLEHRAGLREVFLHSGGTS 207
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N+ S LS H PL E
Sbjct: 208 ARTFP-------ARFPMLQLDRIYVRNAAVHAPMVLPRRPW--SHLSDHAPLAAEISL 256
>gi|170782964|ref|YP_001711298.1| hypothetical protein CMS_2654 [Clavibacter michiganensis subsp.
sepedonicus]
gi|169157534|emb|CAQ02728.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 281
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 12/92 (13%), Positives = 20/92 (21%), Gaps = 4/92 (4%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
P ++AGD N IN+ D + +
Sbjct: 185 EAPTIVAGDTNAGINTEPHRLLIGSGALVDAWPAARERLTPEWGTWS----NYKAPKRTT 240
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
R L+ + + S H
Sbjct: 241 RRIDWMLVTPDVEVERVGINTTRIDGRAPSDH 272
>gi|281357785|ref|ZP_06244271.1| Endonuclease/exonuclease/phosphatase [Victivallis vadensis ATCC
BAA-548]
gi|281315732|gb|EFA99759.1| Endonuclease/exonuclease/phosphatase [Victivallis vadensis ATCC
BAA-548]
Length = 286
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 21/136 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIG--------------------DTDDFW 43
++ E K + G ++ GDFN +
Sbjct: 140 RETEIYAKRLKPLLAAGEKVIMMGDFNNPSPYDAARVNSNAAALEARRYETRPHIENLRN 199
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
D + E C + + + D + +V
Sbjct: 200 GFFDFQCMDNLLEAGLEDVCFFWMKKHNYRPDVGVRIDMAMLSRNLEDQVVEAYVDTTRR 259
Query: 104 RRSK-LSTHCPLTIEY 118
+ LS H P+ +
Sbjct: 260 EFFQTLSDHYPVILTL 275
>gi|148272370|ref|YP_001221931.1| putative membrane protein with hydrolase activity [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|147830300|emb|CAN01234.1| putative membrane protein with hydrolase activity [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 345
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 31/115 (26%), Gaps = 17/115 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINS-------IGDTDDFWQKMDPDGLLIRFPQEKESTC 63
W Q+ G +IAGDFN ++ + D
Sbjct: 237 AWLGQRCDEG-NVIIAGDFNATLDHMSRYGGAPTERDQVTDLGKCVDAGR-ASGNGAVGT 294
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ + + +++ + ++ R S H P+ +
Sbjct: 295 WPTG------LPALLGTPIDHIMATPGWAVTGFRV--VEDRDGAGSDHRPVIAQL 341
>gi|119484378|ref|ZP_01618995.1| Endonuclease/exonuclease/phosphatase [Lyngbya sp. PCC 8106]
gi|119457852|gb|EAW38975.1| Endonuclease/exonuclease/phosphatase [Lyngbya sp. PCC 8106]
Length = 331
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 7/103 (6%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
P ++ GDFN + S + + + K S +
Sbjct: 235 SQKYPVLLIGDFNSEPPSEINLEPTINLFLNTPGIQSAFPPKTLNHPENGTYPSDQPHR- 293
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + S H P+ +++ F
Sbjct: 294 ---TIDYIFYNQNKIE---AIEWQVVTDILASDHLPVVMKFRF 330
>gi|330938836|gb|EGH42355.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 265
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 22/113 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N N + + L + PQ + + + +
Sbjct: 160 AYIRELIGGYRHQVLMGDMNTHANDLLEHSPL------RDLGLLAPQIEATFPSWRPQR- 212
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+ + ++ +S H P+ +E
Sbjct: 213 ----------CLDHILLSPTLTLERVQVLAQP-----ISDHLPVAVEIRLPDS 250
>gi|289614581|emb|CBI58653.1| unnamed protein product [Sordaria macrospora]
Length = 626
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 32/118 (27%), Gaps = 6/118 (5%)
Query: 4 QQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q E K+ + +K + AGDFN T + +
Sbjct: 499 EQAEITAKFISKILKADPAARVIAAGDFNEFAFVKPLTTFASVSGLKELDEALNTPVENR 558
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N +LD+ L + S + +S H P +D
Sbjct: 559 YTYSYDMNAQALDH----MYISPVLASSKSKFQHVHVSSWVAASAVVSDHDPSVALFD 612
>gi|188591189|ref|YP_001795789.1| metal dependent endonuclease/phosphatase [Cupriavidus taiwanensis
LMG 19424]
gi|170938083|emb|CAP63067.1| putative metal dependent endonuclease/phosphatase [Cupriavidus
taiwanensis LMG 19424]
Length = 260
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 15/116 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q E L + + +P VIAGDFN + Q + G +
Sbjct: 142 ARQAEALVERVKNVVPADVPLVIAGDFNDW-----NHRLDAQICNTLGAVEASHARGA-- 194
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + + + ++ ++ +R S H PL E
Sbjct: 195 -----RLHTFPSHMPWWQLDRIYVRGYEIERAHALTGRDWAQR---SDHVPLVAEL 242
>gi|149031346|gb|EDL86344.1| rCG38932, isoform CRA_b [Rattus norvegicus]
Length = 346
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 36/139 (25%), Gaps = 28/139 (20%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------TDDFWQKMD--------- 47
L+ A+ + G +I GD N I D + MD
Sbjct: 5 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGNE 64
Query: 48 -------PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
F +++ S + L D S I ++ Q+
Sbjct: 65 AGPHIGHFMDSFRYFHPKQQRAFTC-WSVVSGARHLNYGSRLDYVLGDRSLVIDTF-QAS 122
Query: 101 LDTRRSKLSTHCPLTIEYD 119
S HCP+ +
Sbjct: 123 FLLPEVMGSDHCPVGAVLN 141
>gi|120586985|ref|NP_001073361.1| hypothetical protein LOC317628 [Rattus norvegicus]
gi|119850781|gb|AAI27531.1| Similar to apurinic/apyrimidinic endonuclease 2 [Rattus norvegicus]
gi|149031345|gb|EDL86343.1| rCG38932, isoform CRA_a [Rattus norvegicus]
Length = 516
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 36/139 (25%), Gaps = 28/139 (20%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------TDDFWQKMD--------- 47
L+ A+ + G +I GD N I D + MD
Sbjct: 175 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHCDASSLECFEEDPGRKWMDGLLSNPGNE 234
Query: 48 -------PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
F +++ S + L D S I ++ Q+
Sbjct: 235 AGPHIGHFMDSFRYFHPKQQRAFTC-WSVVSGARHLNYGSRLDYVLGDRSLVIDTF-QAS 292
Query: 101 LDTRRSKLSTHCPLTIEYD 119
S HCP+ +
Sbjct: 293 FLLPEVMGSDHCPVGAVLN 311
>gi|301113758|ref|XP_002998649.1| transmembrane protein, putative [Phytophthora infestans T30-4]
gi|262111950|gb|EEY70002.1| transmembrane protein, putative [Phytophthora infestans T30-4]
Length = 493
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 10/127 (7%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L ++ + + ++ GDFN + + D ++ + +
Sbjct: 206 QSYELTQFISATNRNDL-TIVCGDFNSSPDCLELKVPKQLLSLRDAYTDTNDEDGLTFAS 264
Query: 65 VIKRNKSSLDYFVIDRDN---------KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ +D + SI +D ++ LS H +
Sbjct: 265 PDNKYSHGEHPMRMDYVMYKIEKRAKGDSDWHLEGSSIFKGFFTDARGEKTPLSDHFGVK 324
Query: 116 IEYDFEK 122
E+ F +
Sbjct: 325 AEFTFSE 331
>gi|256391129|ref|YP_003112693.1| endonuclease/exonuclease/phosphatase [Catenulispora acidiphila DSM
44928]
gi|256357355|gb|ACU70852.1| Endonuclease/exonuclease/phosphatase [Catenulispora acidiphila DSM
44928]
Length = 802
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 31/122 (25%), Gaps = 9/122 (7%)
Query: 2 LSQ--QGEWLKKWADQKIKTGIPFVIA--GDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ 57
L + Q + + + + + GD N S + D G I
Sbjct: 683 LQRSGQAQVEHDFVQKLLDVDKKADVVVVGDLNDYQFSPALSSLRTGTSDGTGPSILTDL 742
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTI 116
N DY + + L+ +SY + S H P +
Sbjct: 743 ISTLPTNEQYTY----DYEGVSEVLDHILVSKGIKDLSYQVVHVNAEYTDQASDHDPQVV 798
Query: 117 EY 118
Sbjct: 799 RI 800
>gi|224827165|ref|ZP_03700261.1| Endonuclease/exonuclease/phosphatase [Lutiella nitroferrum 2002]
gi|224600674|gb|EEG06861.1| Endonuclease/exonuclease/phosphatase [Lutiella nitroferrum 2002]
Length = 249
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 29/116 (25%), Gaps = 14/116 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L ++ + P ++AGDFN D + + +
Sbjct: 145 RKQYATLARYIRDNVPAHYPLILAGDFNDWRGEATDRLLAENGLHEVFQHLFGQHARSFP 204
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + LS H PL+ E
Sbjct: 205 S------------RLPLLTLDRIYVRGLRPVNAKAHHGAPWNG--LSDHLPLSAEL 246
>gi|167561163|ref|ZP_02354079.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
oklahomensis EO147]
gi|167568380|ref|ZP_02361254.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
oklahomensis C6786]
Length = 268
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ TG P V+AGDFN N + ++ + +
Sbjct: 169 RQMSWIAHWIERHASTG-PLVLAGDFNDWRNDS---IPLFGEIGLSEVATLLGASGRTFP 224
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + LS H P +
Sbjct: 225 AFSPALALDKMFVRGMTPIEWRAPGDE--------------TAWLSDHLPYVARLRLD 268
>gi|110834792|ref|YP_693651.1| hypothetical protein ABO_1931 [Alcanivorax borkumensis SK2]
gi|110647903|emb|CAL17379.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 315
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 7/120 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L W + P ++AGDFN + + + L K+S
Sbjct: 192 QTQAALLANWVAAQRS---PLIVAGDFNTTWGQGRFSASYRRFEQAGLLNTWAELPKKSR 248
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK----LSTHCPLTIEY 118
+ R + + ++ + RSK +S H L + +
Sbjct: 249 YSFRYRCQPQALDHIWVSPILKAFVNQVAVSRGHAGRYDSLYRSKGVSPVSDHDALVVYF 308
>gi|70732721|ref|YP_262484.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
fluorescens Pf-5]
gi|68347020|gb|AAY94626.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
fluorescens Pf-5]
Length = 358
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 34/132 (25%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPDGLLIRFPQ 57
S+Q + K D+ G P++I GDFN + P LL
Sbjct: 227 SRQVAAIGKVLDKLEGRGTPWLIGGDFNLLPLGQYQRLSDVQRAPYSADSPLHLLWDKYP 286
Query: 58 EKESTC--------NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
S + + + DR V ++S
Sbjct: 287 MIPSNTQASGVDRAHWLTHYPNDPSLDGPDRTVDYLFYSPRLKRVESRV--RQDDTLRIS 344
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 345 DHLPVLARFLLP 356
>gi|89900093|ref|YP_522564.1| endonuclease/exonuclease/phosphatase [Rhodoferax ferrireducens
T118]
gi|89344830|gb|ABD69033.1| Endonuclease/exonuclease/phosphatase [Rhodoferax ferrireducens
T118]
Length = 252
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 40/120 (33%), Gaps = 19/120 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q L+++ +++ P ++AGDFN Q+ L F +
Sbjct: 144 ARQIAQLQRFVAREVPPMAPLLVAGDFND-------WGSLVQRALDATNLKTFTGAR--- 193
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L +D L+ + S++S H PL E+ +
Sbjct: 194 ---HPTYPARLPLVQLDYVYARGLVPLGVQV------PQGRIWSRMSDHLPLIAEFGLPE 244
>gi|313891277|ref|ZP_07824895.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|313120344|gb|EFR43465.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
Length = 275
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 37/142 (26%), Gaps = 25/142 (17%)
Query: 2 LSQQG---EWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
L + EW K+AD ++ P + GD+N I + +
Sbjct: 136 LRRLADRQEWDIKYADYLTQLDAQKPVLATGDYNVAHKEIDLANPSSNRRSAGFTDEERA 195
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ + + + +L N +
Sbjct: 196 GFTALLEKGFTDTFRHLHGDLPNVYTWWAQRSKTSKMNNTGWRIDYWLTSNRIADKVLKS 255
Query: 99 SDLDTRRSKLSTHCPLTIEYDF 120
+D+ + H P+ +E D
Sbjct: 256 EMIDSGARQ--DHTPILLEIDL 275
>gi|296160793|ref|ZP_06843606.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. Ch1-1]
gi|295888885|gb|EFG68690.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. Ch1-1]
Length = 265
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ G P V+AGDFN N +++ + + +
Sbjct: 166 RQMNWIAHWIAKEAPQG-PLVLAGDFNDWRNDSV---PLFREHGLQEVATLLGESGRTFP 221
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + V + Q +T LS H P E
Sbjct: 222 ------------AFSPALALDKMFVRGMQPVEWIQPTQETAW--LSDHLPYMARLRLE 265
>gi|262202977|ref|YP_003274185.1| endonuclease/exonuclease/phosphatase [Gordonia bronchialis DSM
43247]
gi|262086324|gb|ACY22292.1| Endonuclease/exonuclease/phosphatase [Gordonia bronchialis DSM
43247]
Length = 314
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 28/112 (25%), Gaps = 17/112 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
L + + V AGDFN +S + + DG Q
Sbjct: 217 RALGDYL--RSTPQQRVVAAGDFNATWDSSRY-----RALLTDGFADAAEQIGAGFSPTF 269
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
N+S + +D S S S H + +
Sbjct: 270 PANRSRRPFITLDHVITRGFAAASLSTHDIP----------GSDHRAVVVTL 311
>gi|221132889|ref|XP_002158912.1| PREDICTED: similar to predicted protein, partial [Hydra
magnipapillata]
Length = 98
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 7/84 (8%), Positives = 20/84 (23%), Gaps = 3/84 (3%)
Query: 36 IGDTDDFWQKMDPDGLLIRFP-QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV 94
+ DF ++ + +++ + F++
Sbjct: 15 EEERSDFTALLEDGYIDTFRKLNPEKTGAYTFWTYMMNARSKNKGWRLDYFIVTKDIEDD 74
Query: 95 SYDQSDLDTRRSKLSTHCPLTIEY 118
+ S HCP+ +
Sbjct: 75 IC--DSVIRSSVMGSDHCPIVLNL 96
>gi|311347486|gb|ADP90688.1| DNA-apurinic or apyrimidinic site lyase 2 [Homo sapiens]
Length = 518
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 30/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLL 52
L+ A+ + G +I GD N I D + G
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 235
Query: 53 IRFPQEKESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ Y L D + I ++ Q+
Sbjct: 236 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARYLNYGSRLDYVLGDRTLVIDTF-QASF 294
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 295 LLPEVMGSDHCPVGAVLS 312
>gi|291450703|ref|ZP_06590093.1| large secreted protein [Streptomyces albus J1074]
gi|291353652|gb|EFE80554.1| large secreted protein [Streptomyces albus J1074]
Length = 606
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 29/117 (24%), Gaps = 14/117 (11%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + + ++ GD N S K L P E+
Sbjct: 499 QAASVNTFVKKLLSADRKAKVLVLGDINDFEFSATTQTLTAGKALKPAALSLPPAER--Y 556
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEY 118
V + L+ + YD + S H P + +
Sbjct: 557 SYVF---------QGNSQILDQILVTPAVKHFHYDSVHINAEFADQNSDHDPQVLRF 604
>gi|239978820|ref|ZP_04701344.1| large secreted protein [Streptomyces albus J1074]
Length = 618
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 29/117 (24%), Gaps = 14/117 (11%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + + ++ GD N S K L P E+
Sbjct: 511 QAASVNTFVKKLLSADRKAKVLVLGDINDFEFSATTQTLTAGKALKPAALSLPPAER--Y 568
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEY 118
V + L+ + YD + S H P + +
Sbjct: 569 SYVF---------QGNSQILDQILVTPAVKHFHYDSVHINAEFADQNSDHDPQVLRF 616
>gi|308234431|ref|ZP_07665168.1| Endonuclease/exonuclease/phosphatase [Atopobium vaginae DSM 15829]
gi|328944277|ref|ZP_08241741.1| hypothetical protein HMPREF0091_10966 [Atopobium vaginae DSM 15829]
gi|327491196|gb|EGF22971.1| hypothetical protein HMPREF0091_10966 [Atopobium vaginae DSM 15829]
Length = 462
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 34/130 (26%), Gaps = 15/130 (11%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC- 63
Q + L + G + GD+N + + Q + + +
Sbjct: 336 QLKLLTNTLVSEYAKGNYVIAGGDWNHALCDSLELYPSEQGIPDWVKPLNASDLPQGFTC 395
Query: 64 ----------NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ + F++ N+ +++ S H P
Sbjct: 396 VAADNLSEVPTCRGDDIAYEKGVTYTTTVDGFIVSNNVEAQAHNIDT----GFATSDHNP 451
Query: 114 LTIEYDFEKG 123
+ + + + G
Sbjct: 452 VLLTFKLKAG 461
>gi|330469350|ref|YP_004407093.1| endonuclease/exonuclease/phosphatase [Verrucosispora maris
AB-18-032]
gi|328812321|gb|AEB46493.1| endonuclease/exonuclease/phosphatase [Verrucosispora maris
AB-18-032]
Length = 236
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 17/120 (14%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + K+ + +P + A D N + + + +C
Sbjct: 134 QAKLFKR---ELDVAPLPVIAAADLNEEP-DGPAWCTVAHGLTDAAVAADRADRLTYSC- 188
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
R +D ++V YD D R + S H P+ ++ +
Sbjct: 189 -----------ADPRRRIDGVFVDPRITVVDYDVLDTPLSR-RASDHFPIVVDLLLPVAD 236
>gi|261754614|ref|ZP_05998323.1| endonuclease/exonuclease/phosphatase [Brucella suis bv. 3 str. 686]
gi|261744367|gb|EEY32293.1| endonuclease/exonuclease/phosphatase [Brucella suis bv. 3 str. 686]
Length = 357
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ + Q +++GD N +++ L P
Sbjct: 246 QQSEQIEALSVQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 298
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 299 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 347
>gi|290959609|ref|YP_003490791.1| hypothetical protein SCAB_52121 [Streptomyces scabiei 87.22]
gi|260649135|emb|CBG72249.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 295
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 22/128 (17%), Gaps = 13/128 (10%)
Query: 4 QQGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDT---------DDFWQKMDPDGLLI 53
+Q L + + P VI GDFN +S Q
Sbjct: 150 RQVTALAGFVARHRGGHAHPSVITGDFNAWPDSDEVRLFGGYRTAPAVPGQCFFDAWEYA 209
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL---DTRRSKLST 110
+ S V S
Sbjct: 210 EPGAPSATWDLANPYVAGSFGPSVRVDYIHVGPPGPGGLGHVRAVRRAGEGPVGGVWPSD 269
Query: 111 HCPLTIEY 118
H + +
Sbjct: 270 HLAVVADL 277
>gi|225708354|gb|ACO10023.1| Deoxyribonuclease gamma precursor [Osmerus mordax]
Length = 318
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 4/119 (3%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L K + GDFN + + ++ D + +KE
Sbjct: 164 REIDALYDVFQAVKKRWNTEMVMFLGDFNADCGYVAKKNRVKVRLYSDPSFLWLISDKED 223
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
T + + V + ++ S ++D+ + L S H P+ +
Sbjct: 224 TTVRASTSCTYDRIVVHGSEFSRGIVPYSAKPFNFDKEYQLSEEQALEVSDHYPVEVVL 282
>gi|161618597|ref|YP_001592484.1| hypothetical protein BCAN_A0638 [Brucella canis ATCC 23365]
gi|161335408|gb|ABX61713.1| Hypothetical protein BCAN_A0638 [Brucella canis ATCC 23365]
Length = 358
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ + Q +++GD N +++ L P
Sbjct: 247 QQSEQIEALSVQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 299
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 300 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 348
>gi|330898293|gb|EGH29712.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 248
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 32/118 (27%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + L + +I G P ++AGDFN + + K
Sbjct: 147 RQQLKLLNELM-ARIPEGEPVIVAGDFNDWRRRADA-SLQGSGLHEVFVERFGAPAKSFP 204
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N+ S S S LS H PL +E
Sbjct: 205 ARW------------PLLCLDRIYVRNATSHRPKVLSSRPW--SHLSDHAPLAVELTL 248
>gi|313679171|ref|YP_004056910.1| endonuclease/exonuclease/phosphatase [Oceanithermus profundus DSM
14977]
gi|313151886|gb|ADR35737.1| Endonuclease/exonuclease/phosphatase [Oceanithermus profundus DSM
14977]
Length = 353
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ ++K+ ++ G V+ GD+N + + F G + FP++
Sbjct: 225 LREQQLGYIKEVMTREYARGNYVVVGGDWNLILPGVDPDAAFAHSEPRPGFYLPFPEDWT 284
Query: 61 STCNVIKR----------NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ FL+ + + DL S
Sbjct: 285 PAGWTWAYDARTPTNRSVSRPWRPGENYVTVIDGFLVSPNVEVQEVRTEDL---GFASSD 341
Query: 111 HCPLTIEYD 119
H P+ +
Sbjct: 342 HNPVRVRLR 350
>gi|301782323|ref|XP_002926565.1| PREDICTED: deoxyribonuclease-1-like 2-like [Ailuropoda melanoleuca]
Length = 278
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 3/100 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+ GDFN N + + D ++ + + + V + +
Sbjct: 177 DDLLFLGDFNADCNYVREGDWPSVRLRSSEVFKWLIPDS-ADTTVGNSDCAYDRIVACGA 235
Query: 81 DNKNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPLTIEY 118
+ L S ++ + + + +S H P+ +
Sbjct: 236 RLRRRLKPQSAAVHDFQEEFGLDQAQALAISDHFPVEVTL 275
>gi|301309194|ref|ZP_07215138.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
gi|300832876|gb|EFK63502.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
Length = 306
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 35/139 (25%), Gaps = 31/139 (22%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ + + K + +P ++ GDFN S + +D G++ + +
Sbjct: 168 AESAKLILKKIKE-FPKRLPAILTGDFNVDQTSESY-----KLLDGSGIMRDSYEIADFR 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR------------------ 104
D + + F + Y R
Sbjct: 222 YAPNGTFNGFHPDRKTDSRIDHLFLTKEFEVKKYGILTDTYRSEVKESAQKEQNGNFPKE 281
Query: 105 -------RSKLSTHCPLTI 116
S H P+ I
Sbjct: 282 VSLSKYEARTPSDHFPVMI 300
>gi|283833916|ref|ZP_06353657.1| endonuclease/exonuclease/phosphatase family protein [Citrobacter
youngae ATCC 29220]
gi|291070588|gb|EFE08697.1| endonuclease/exonuclease/phosphatase family protein [Citrobacter
youngae ATCC 29220]
Length = 253
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L W + + G P V+AGDFN D D + R
Sbjct: 150 RQAQLAMLADWVNA-LPEGEPVVVAGDFNDWRQKA--NHPLKANADLDEIFTRAH----- 201
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ + + LS H PL+ E
Sbjct: 202 -----GRPARTFPVQFPLLRLDRIYVKNANASTP--TALALRHWRHLSDHAPLSAEIHL 253
>gi|238059911|ref|ZP_04604620.1| endonuclease/exonuclease/phosphatase [Micromonospora sp. ATCC
39149]
gi|237881722|gb|EEP70550.1| endonuclease/exonuclease/phosphatase [Micromonospora sp. ATCC
39149]
Length = 300
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 2/108 (1%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ D G+P ++ GDFN + +K + + V
Sbjct: 194 ELIDVLDAAGVPAIVLGDFNAVPDDEPYR--LLRKHGFRDAWTEANGDADGFTGVRADIA 251
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
D + + + + V+ + S H L +
Sbjct: 252 GPSDVWQRLDYVMHRGTELTAGAVTLLGAGRLPSGRWPSDHAGLVAAF 299
>gi|302184783|ref|ZP_07261456.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
syringae 642]
Length = 380
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 32/132 (24%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL----------- 51
+Q + D+ G P++I GDFN Q++
Sbjct: 248 QRQVAATETQLDKLESGGTPWLIGGDFNLLPLGQYQRLPEQQRLGYAADSELHELWDKYP 307
Query: 52 --LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + DR S VS DT +S
Sbjct: 308 MIPDNAESSGIDRSKWLTHFPNDSRISGPDRTVDYLFYSPSLKRVSARVRRDDTLL--IS 365
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 366 DHLPVIGRFLLP 377
>gi|170088468|ref|XP_001875457.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650657|gb|EDR14898.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 343
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 9/70 (12%), Positives = 16/70 (22%), Gaps = 3/70 (4%)
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + E R D + + + S
Sbjct: 274 DVWRQLHPEDRHYTYFSYRFNCRTKGLGWRLDMFVLSERMMERVKMCEI---RSEIYGAS 330
Query: 110 THCPLTIEYD 119
HCPL +E +
Sbjct: 331 DHCPLVMEIE 340
>gi|149279437|ref|ZP_01885567.1| hypothetical protein PBAL39_16596 [Pedobacter sp. BAL39]
gi|149229730|gb|EDM35119.1| hypothetical protein PBAL39_16596 [Pedobacter sp. BAL39]
Length = 294
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 25/105 (23%), Gaps = 5/105 (4%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
I +P + GD N +S D + +
Sbjct: 194 IAGKLPAIFTGDLNGGHSSEWYLTLANSGFLKDTYGQVKFPYANNAS-----FNAFGKAL 248
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + F+ + +S H P+ ++ +
Sbjct: 249 EGKEIIDHVFVTKDFTAKRWGLLTDTYHGKFISDHFPVLVDVVLK 293
>gi|29832889|ref|NP_827523.1| large secreted protein [Streptomyces avermitilis MA-4680]
gi|29610010|dbj|BAC74058.1| putative large secreted protein [Streptomyces avermitilis MA-4680]
Length = 608
Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 27/122 (22%), Gaps = 19/122 (15%)
Query: 5 QGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + + GD N S + E+ +
Sbjct: 498 QATAVNAFVKDVLDTQKNADVIALGDMNDFEFSDTAKILEGDGELWSAIKSLPKSERYTY 557
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR-----RSKLSTHCPLTIE 117
DY + L+ S D ++S H P +
Sbjct: 558 -----------DYQGNSQVLDQILVSPSIRR-GCDVDYDSVHLNSEFSDQVSDHDPQVLR 605
Query: 118 YD 119
+
Sbjct: 606 FR 607
>gi|325109290|ref|YP_004270358.1| endonuclease/exonuclease/phosphatase [Planctomyces brasiliensis DSM
5305]
gi|324969558|gb|ADY60336.1| Endonuclease/exonuclease/phosphatase [Planctomyces brasiliensis DSM
5305]
Length = 247
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 15/118 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L D + +P +I GDFN W+ DG + E+ +
Sbjct: 136 QVNHLLDHVDLQDNLDLPTLIVGDFND-----------WRNTLADGPFAKHGFEQLTRPP 184
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
R + ++ + S H PL +++ E+
Sbjct: 185 SRYRTFPAYLPIG---SLDKAFCRGPINVRDVRVVRNQLTKE-ASDHLPLLVDFHLER 238
>gi|298374105|ref|ZP_06984063.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
gi|298268473|gb|EFI10128.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
Length = 308
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 37/138 (26%), Gaps = 30/138 (21%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ + + K + +P ++ GDFN ++ + +D G++ Q +
Sbjct: 172 AESAKLILKKLKE-FPEKLPAILTGDFNV-----DQHNESYLLLDNSGIMRDSYQIADFR 225
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------------- 107
+ D + + F + Y R
Sbjct: 226 YVPNGTFNAFHADRKTDSRIDHLFLTKEFDVKKYGVLTDTYRSEAKDAKNEQNANFPKEV 285
Query: 108 ---------LSTHCPLTI 116
S H P+ I
Sbjct: 286 SMQKHVARVPSDHFPVMI 303
>gi|91781509|ref|YP_556715.1| putative metal-dependent hydrolase [Burkholderia xenovorans LB400]
gi|91685463|gb|ABE28663.1| Putative metal-dependent hydrolase [Burkholderia xenovorans LB400]
Length = 265
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ G P V+AGDFN N +++ + + +
Sbjct: 166 RQMNWIAHWIAKEAPQG-PLVLAGDFNDWRNDSV---PLFREHGLQEVATLLGESGRTFP 221
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + V + Q +T LS H P E
Sbjct: 222 ------------AFSPALALDKMFVRGMKPVEWIQPTQETAW--LSDHLPYMARLRLE 265
>gi|23501509|ref|NP_697636.1| AP endonuclease domain-containing protein [Brucella suis 1330]
gi|254703962|ref|ZP_05165790.1| AP endonuclease domain-containing protein [Brucella suis bv. 3 str.
686]
gi|260566790|ref|ZP_05837260.1| endonuclease/exonuclease/phosphatase family protein [Brucella suis
bv. 4 str. 40]
gi|23347417|gb|AAN29551.1| AP endonuclease family 1 domain protein [Brucella suis 1330]
gi|260156308|gb|EEW91388.1| endonuclease/exonuclease/phosphatase family protein [Brucella suis
bv. 4 str. 40]
Length = 322
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E ++ + Q +++GD N +++ L P
Sbjct: 211 QQSEQIEALSVQFRGLSENAILSGDLNATP-----WSATTKRI--AELAAMTPAPPTGPT 263
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +R +SL + ID +F+ S + ++ S H P+ +E+
Sbjct: 264 WLYRRLPASLRFAG-------LPIDQTFAKGRVAISKITRQQPIGSDHLPVLVEFS 312
>gi|262196690|ref|YP_003267899.1| endonuclease/exonuclease/phosphatase [Haliangium ochraceum DSM
14365]
gi|262080037|gb|ACY16006.1| Endonuclease/exonuclease/phosphatase [Haliangium ochraceum DSM
14365]
Length = 285
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 11/130 (8%), Positives = 30/130 (23%), Gaps = 15/130 (11%)
Query: 3 SQQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDT------DDFWQKMDPDGLLIR 54
+Q + + ++ GDFN + +S ++
Sbjct: 144 ERQVLAIDHALRACAAEEPAAVHILCGDFNAEPDSDEMRFLRGLCTLAGRRSYFQDAFAH 203
Query: 55 FPQEKESTCNVIKRNKSSLDYFV-IDRDNKNFLIDNSFS------IVSYDQSDLDTRRSK 107
++ +R + + DR + + +
Sbjct: 204 RHPGEDGVTWCTERGAARARRSMDRDRRLDYIYVSKRQRDGRGTVREARVVLGGRSGEVA 263
Query: 108 LSTHCPLTIE 117
S H + +
Sbjct: 264 ASDHYGVLAD 273
>gi|300362647|ref|ZP_07058823.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353638|gb|EFJ69510.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
Length = 275
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDPDGLLIRFP 56
QK+ P + +GD+N I + +
Sbjct: 154 QKLDQVKPVIASGDYNVAHTPIDLKHPENNHHNAGFTDEERQDFDKLLKLGFTDTFRKIH 213
Query: 57 QE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ +R ++S +++ N + LDT K HCP+
Sbjct: 214 GNVEGVYSWWAQRVRTSKAN-NSGWRIDYYIVSNRIANQITKSEMLDTGERK--DHCPIM 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 LEINL 275
>gi|328883590|emb|CCA56829.1| integral membrane protein [Streptomyces venezuelae ATCC 10712]
Length = 345
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 33/118 (27%), Gaps = 14/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ ++ +A +T P +IAGDFN + D + +
Sbjct: 238 KRELGRVQDYAATAARTPGPTLIAGDFNASQDHAAFRHILAAGGLQDAARRA--EASRTP 295
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ ++ + + + ++ S H + + D
Sbjct: 296 TWPT------------EGPLPPYVQIDHVLVRDFTVREVRFPALAGSDHRAVLADLDL 341
>gi|226531290|ref|NP_001144669.1| hypothetical protein LOC100277695 [Zea mays]
gi|195645474|gb|ACG42205.1| hypothetical protein [Zea mays]
gi|238007716|gb|ACR34893.1| unknown [Zea mays]
Length = 373
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 17/156 (10%), Positives = 35/156 (22%), Gaps = 38/156 (24%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------ 43
++ +W K+ + P + GD N I + +
Sbjct: 203 FQRRRKWDKRMLEFVQHVDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNKEDCG 262
Query: 44 ---------QKMDP-------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLI 87
++ +EK+ Y FL+
Sbjct: 263 QPGFTPAERRRFGNILFQGKLVDAYRHLHKEKDIDGGFSWSGHPIGKYRGKRMRIDYFLV 322
Query: 88 DNSFSIVSYDQS----DLDTRRSKLSTHCPLTIEYD 119
++ S HCP+++E
Sbjct: 323 SEQLKDRIVSCEMHGRGIELDGFYGSDHCPVSLELS 358
>gi|42526103|ref|NP_971201.1| hypothetical protein TDE0587 [Treponema denticola ATCC 35405]
gi|41816215|gb|AAS11082.1| conserved domain protein [Treponema denticola ATCC 35405]
Length = 222
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 39/133 (29%), Gaps = 16/133 (12%)
Query: 1 MLSQQ-GEWLKKWADQKIKTGIPFVIAGDFNR-KINSIGDTDDFWQKMDPDGLLIRFPQE 58
+L +Q E+L+ A + G + GD+N + + + I +
Sbjct: 91 VLRKQEMEYLRNLALKFYNEGHWVIAGGDWNSLFPGVEKNRFMPYTTPEEFLEWIEYLPA 150
Query: 59 KESTCNVIKRN-----------KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
K + F+ + I+ +DL +
Sbjct: 151 DFIGKEWKWGFDSSTPTVRLLEKPYVKGENYTTIIDGFICSPNVEIIGVKTTDL---NFE 207
Query: 108 LSTHCPLTIEYDF 120
+S H P+ E+
Sbjct: 208 VSDHHPVIAEFTL 220
>gi|328473167|gb|EGF44015.1| putative phospholipase C [Vibrio parahaemolyticus 10329]
Length = 442
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 11/125 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I V +GDFN + GD +
Sbjct: 314 QRQFQQMRTMAQSLNIPNNETVVYSGDFNVNKLKFPGDYQQMIANLSAMEPQYSGYTAST 373
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ +L ++ N + + S++ + +D + LS H
Sbjct: 374 FDPRINNFAGEALSGGENVEYLDYVMVSNEYGVKSFNDNRVDVPRSTAEGLWKHYNLSDH 433
Query: 112 CPLTI 116
P++
Sbjct: 434 FPVSA 438
>gi|319954283|ref|YP_004165550.1| endonuclease/exonuclease/phosphatase [Cellulophaga algicola DSM
14237]
gi|319422943|gb|ADV50052.1| Endonuclease/exonuclease/phosphatase [Cellulophaga algicola DSM
14237]
Length = 339
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 20/104 (19%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST-CNVIKRNKSSLDYF 76
K+ +I GDFN + ++ + D + + +D+
Sbjct: 255 KSPYRAIICGDFNGTQ-----YSNVYKTIRGDMQDTFQEKGSGYGRTYNFRYYPVRIDFI 309
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S++ KLS H P+ ++F
Sbjct: 310 --------------LVEDSFNVLSHKNYNVKLSDHFPVMTSFNF 339
>gi|218549643|ref|YP_002383434.1| metal-dependent hydrolase [Escherichia fergusonii ATCC 35469]
gi|218357184|emb|CAQ89819.1| putative metal-dependent hydrolase [Escherichia fergusonii ATCC
35469]
Length = 253
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|16125832|ref|NP_420396.1| hypothetical protein CC_1585 [Caulobacter crescentus CB15]
gi|221234593|ref|YP_002517029.1| endonuclease/exonuclease/phosphatase family protein [Caulobacter
crescentus NA1000]
gi|13422978|gb|AAK23564.1| hypothetical protein CC_1585 [Caulobacter crescentus CB15]
gi|220963765|gb|ACL95121.1| endonuclease/exonuclease/phosphatase family protein [Caulobacter
crescentus NA1000]
Length = 325
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 30/115 (26%), Gaps = 14/115 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QG L + A + ++AGDFN + D L +
Sbjct: 223 QGRKLARLASGFDRKS--MILAGDFNSTP-------WSFTLKRQDETLGLRRWTRAMASW 273
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R + + + V + + S H P+ + +
Sbjct: 274 PAGRFSRIMAAPAPFLPIDHVYAGEQWRAVKVE-----RGPAVGSDHRPIVVTFR 323
>gi|60680824|ref|YP_210968.1| putative endonuclease/exonuclease/phosphatase family protein
[Bacteroides fragilis NCTC 9343]
gi|60492258|emb|CAH07023.1| putative endonuclease/exonuclease/phosphatase family protein
[Bacteroides fragilis NCTC 9343]
Length = 285
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 25/107 (23%), Gaps = 4/107 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I P ++ GDFN + ++
Sbjct: 182 KEIAGTHPAMMTGDFNVSEEWEAYKTITSNEFVLKDAWKIAGKQSGEN-YTFHDFGRVP- 239
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYDF 120
+ + + S T + LS H + +F
Sbjct: 240 -VGEREKIDFIFVTPQIKVADAEIISSAITDSTYLSDHNAHLADLEF 285
>gi|47522808|ref|NP_999156.1| deoxyribonuclease-1 precursor [Sus scrofa]
gi|62512132|sp|P11936|DNAS1_PIG RecName: Full=Deoxyribonuclease-1; AltName: Full=Deoxyribonuclease
I; Short=DNase I; Flags: Precursor
gi|15027532|dbj|BAB62268.1| deoxyribonuclease I [Sus scrofa]
Length = 284
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 12/110 (10%), Positives = 38/110 (34%), Gaps = 4/110 (3%)
Query: 12 WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + K ++ GDFN + + + ++ + + V +
Sbjct: 173 YLNVRQKWDLEDIMLMGDFNAGCSYVTTSHWSSIRLRESPPFQWLIPDT-ADTTVSSTHC 231
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
+ V + ++ +S + + + + ++ L S H P+ +
Sbjct: 232 AYDRIVVAGPLLQRAVVPDSAAPFDFQAAFGLSEQTALAISDHYPVEVTL 281
>gi|262369779|ref|ZP_06063107.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
gi|262315847|gb|EEY96886.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
Length = 440
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 11/132 (8%)
Query: 1 MLSQQGEWLKKWAD-QKIKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQE 58
M QQ + ++ D Q I + ++ GDFN + D ++ + E
Sbjct: 308 MRQQQFKQIRALVDKQNIPSFDAVLMGGDFNVNKLLWPQDYAQMQINLNGTVPVSTGYTE 367
Query: 59 KESTCNVIKRNKS---------SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
V K + LDY V +++ + + + +D LS
Sbjct: 368 STFDPRVNKLAGAGLTGGSTVEYLDYVVSSNNHRQPMQARNDVRILRSAADPLFMTWDLS 427
Query: 110 THCPLTIEYDFE 121
H P+ ++ +
Sbjct: 428 DHFPVMGQFQYN 439
>gi|315163823|gb|EFU07840.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1302]
Length = 330
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 15/123 (12%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQE 58
+ +Q + LKK D T ++ GDFN IN ++ ++ + +
Sbjct: 221 VRKKQFQQLKKALDSDTTTYK--ILVGDFNADDGINEYDIFNEGYKMANGYEGVWLETMA 278
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+E + ++D + + N ++ ++ + ++T ++ LS H PL +
Sbjct: 279 EEDF------ARKAVDSDLRVKFLDNVIVSDNI-----EIKKVETLKTNLSDHLPLVVRL 327
Query: 119 DFE 121
+ +
Sbjct: 328 ELK 330
>gi|289674481|ref|ZP_06495371.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
syringae FF5]
Length = 269
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 22/113 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N N + + L + PQ + + + +
Sbjct: 164 AYIRELIGGYRHQVLMGDMNTHANDLLEHSPL------RDLGLLAPQIEATFPSWRPQR- 216
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+ + ++ +S H P+ +E
Sbjct: 217 ----------CLDHILLSPTLTLERVQVLAQP-----ISDHLPVAVEIRLPDS 254
>gi|256833418|ref|YP_003162145.1| Endonuclease/exonuclease/phosphatase [Jonesia denitrificans DSM
20603]
gi|256686949|gb|ACV09842.1| Endonuclease/exonuclease/phosphatase [Jonesia denitrificans DSM
20603]
Length = 260
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 33/114 (28%), Gaps = 17/114 (14%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ + +W ++ ++AGD N + + + +
Sbjct: 160 MDAVNEWGSER------TIVAGDLNEEPGG-PVWELCDSLLPDARPRALSASPDVAVTFP 212
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R + + + + + S++ S S H P+ IE D
Sbjct: 213 SHRARR---------RIDSIFVPSRAVVWSFEV-RAGAAVSAASDHRPVVIEVD 256
>gi|225714724|gb|ACO13208.1| Deoxyribonuclease gamma precursor [Esox lucius]
Length = 266
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 2/100 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+ GDFN + + ++ D + T + + V
Sbjct: 161 DNVMFLGDFNADGSYVSAKRMKTIRIRSDKHFHWLIADDVDTTANNSNDYTYDRIVVYGD 220
Query: 81 DNKNFLIDNSFSIVSYDQSD--LDTRRSKLSTHCPLTIEY 118
D + ++ NS ++ + DT K+S H P+ +
Sbjct: 221 DMLDAVVPNSAKPFNFQNAYGLNDTGTLKVSDHYPVEVVL 260
>gi|169335183|ref|ZP_02862376.1| hypothetical protein ANASTE_01591 [Anaerofustis stercorihominis DSM
17244]
gi|169257921|gb|EDS71887.1| hypothetical protein ANASTE_01591 [Anaerofustis stercorihominis DSM
17244]
Length = 357
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 14/132 (10%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFN------RKINSIGDTDDFW---QKMDPDGLLI 53
+Q + L + +++ K G + GDFN D ++
Sbjct: 228 KKQTKVLTDFLNKEYKKGNYCIAGGDFNQNFPNADNKKYPIINDKYFTPGTLNLDAFSKD 287
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVID--RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+S N+ + F++ + + D + S H
Sbjct: 288 WTFAVDDSLPTSRLLNEEYDENSKNTQLYVIDGFILSPNVKLKKVKTIDT---KFNYSDH 344
Query: 112 CPLTIEYDFEKG 123
P+ IE EK
Sbjct: 345 NPVRIEVKLEKE 356
>gi|261878952|ref|ZP_06005379.1| AP endonuclease domain protein [Prevotella bergensis DSM 17361]
gi|270334463|gb|EFA45249.1| AP endonuclease domain protein [Prevotella bergensis DSM 17361]
Length = 364
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 17/99 (17%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
+P ++ GDFN S + + + E + + +
Sbjct: 275 DMPIILCGDFNDSPISYA-HRTIAEGLTDCYV------ETANGPGISYHHNGFY------ 321
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
N + F + + S H P+
Sbjct: 322 VRIDNIMCSAHFKPFACRVDNEIKN----SDHYPIYCWL 356
>gi|260220365|emb|CBA27833.1| hypothetical protein Csp_A04240 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 284
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 19/117 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + L ++ ++I P ++AGDFN +++ P GL + +
Sbjct: 180 RQLQQLTQFIQREIPPDAPLLVAGDFNDLP------AWVARQLAPAGLKAPVTKPCVTFP 233
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + VS + +++S H PL E+
Sbjct: 234 S-----------RLPLVQLDHV-LARGLTPVSATAPRGMS-WARMSDHLPLITEWQL 277
>gi|149199705|ref|ZP_01876737.1| hypothetical protein LNTAR_25155 [Lentisphaera araneosa HTCC2155]
gi|149137222|gb|EDM25643.1| hypothetical protein LNTAR_25155 [Lentisphaera araneosa HTCC2155]
Length = 275
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 8/108 (7%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ +T ++ GDFN I ++ KE +
Sbjct: 169 RKETTERVIVVGDFNNNIGDAAMNTFKKAGFKATWKDLKIDVSKE------YTYNAFDPK 222
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + ++ + V+ + + LS H P+ E F +
Sbjct: 223 KNLGVIDHILCKTSAGAKVTAG--GIIELKKPLSDHKPIWAEIIFPRE 268
>gi|170724257|ref|YP_001751945.1| endonuclease/exonuclease/phosphatase [Pseudomonas putida W619]
gi|169762260|gb|ACA75576.1| Endonuclease/exonuclease/phosphatase [Pseudomonas putida W619]
Length = 284
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 23/118 (19%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L + + I V+ GD N N + D L + PQ + + +
Sbjct: 180 ARQL-AYIRELIGGYRHQVLMGDMNTHANDLLDHSPL------RDLGLIAPQVEATFPSW 232
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + L+ S ++ + +S H P+ +E
Sbjct: 233 RPQR-----------CLDHILLSPSLTLERVEVLAQP-----ISDHLPVAVEIRLPDA 274
>gi|148654035|ref|YP_001281128.1| endonuclease/exonuclease/phosphatase [Psychrobacter sp. PRwf-1]
gi|148573119|gb|ABQ95178.1| Endonuclease/exonuclease/phosphatase [Psychrobacter sp. PRwf-1]
Length = 251
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 14/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + ++ + I P ++AGDFN + + F Q+ +
Sbjct: 148 QKQYRAIAEYVNDTIDQSRPLILAGDFNDWKKVS-----CQRLAHELNMTEAFMQKHKKL 202
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + S+LS H P++ E
Sbjct: 203 LPTYP-------AKLPVLSLDRIYVR-NLKVKRAWVHKGKP-WSELSDHLPISAELSL 251
>gi|32381240|gb|AAP80580.1| DNA nuclease [Streptococcus suis]
Length = 1041
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 9/120 (7%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + + V+ GDFN + M L+ +
Sbjct: 827 AQTIADFTKAGLAQNPNANIVMLGDFNDYEFTKTIEILEAGGM---ANLVSRHDASDRFS 883
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
N SLD ++ + + + S + H PL ++ D K
Sbjct: 884 YFYNGNNQSLDNMLVSTNLLERYAFDMVHVNSA----FMEEHGRAFDHDPLLVQLDVTKA 939
>gi|91793693|ref|YP_563344.1| endonuclease/exonuclease/phosphatase [Shewanella denitrificans
OS217]
gi|91715695|gb|ABE55621.1| Endonuclease/exonuclease/phosphatase [Shewanella denitrificans
OS217]
Length = 475
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 38/124 (30%), Gaps = 11/124 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++++A I + GDFN D + + E
Sbjct: 341 QKQFKQMREFAHSLAIPADETVIYGGDFNVNKRKFEDDYQQMFANLKAKQPSYSGYIEST 400
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ + + L +I + ++ + +D+ ++ LS H
Sbjct: 401 FDPRINEFAGTPLSGGENVEYLDYIVISDEYAQTQSNDNDVKVPRSSAASLWQKWNLSDH 460
Query: 112 CPLT 115
P+
Sbjct: 461 FPVV 464
>gi|319946436|ref|ZP_08020673.1| RgfB protein [Streptococcus australis ATCC 700641]
gi|319747404|gb|EFV99660.1| RgfB protein [Streptococcus australis ATCC 700641]
Length = 271
Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 35/117 (29%), Gaps = 5/117 (4%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q+ L++ Q K P ++AGDFN G + I Q K +
Sbjct: 157 FQQEWARLEERFSQLQK---PLILAGDFNNPAGQEGYEAILASPLALQDSFIEARQTKGT 213
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
V D V + I + + + +S H L+ +
Sbjct: 214 YT-VGPGIDGWDDNQV-PLRIDYVFTSKEWVIERLEVVFDGSSQPLVSDHYGLSADL 268
>gi|224062387|ref|XP_002300826.1| predicted protein [Populus trichocarpa]
gi|222842552|gb|EEE80099.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 27/116 (23%), Gaps = 11/116 (9%)
Query: 11 KWADQKIKTGIPFVIAGDFN--------RKINSIGDTDDFW---QKMDPDGLLIRFPQEK 59
K++ Q I + GD N + + + D +
Sbjct: 388 KYSPQTILEHDRIIWVGDLNYRVALSYYAVKTLVEMHNWRALRGRVFDGWSEGRIYFPPT 447
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
N R + R + + Q S+ S H P+
Sbjct: 448 YKYSNNSDRYAGDDRHLKEKRRTPAWCDRILWYGKGLHQLSYVRGESRFSDHRPVY 503
>gi|330501089|ref|YP_004377958.1| endonuclease/exonuclease/phosphatase [Pseudomonas mendocina NK-01]
gi|328915375|gb|AEB56206.1| endonuclease/exonuclease/phosphatase [Pseudomonas mendocina NK-01]
Length = 290
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 13/113 (11%), Positives = 33/113 (29%), Gaps = 22/113 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ +++ V+ GD N + + L + PQ + + + +
Sbjct: 185 AYIRERVSEFRHLVLMGDMNTHAVDLLENSPL------RDLGLLAPQVEATFPSWRPQR- 237
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+ + + D +S H P+ +E +
Sbjct: 238 ----------CLDHILLSSELELGRVDVLSQP-----ISDHLPVAVEIRLPEA 275
>gi|314939914|ref|ZP_07847117.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium TX0133a04]
gi|314941542|ref|ZP_07848429.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium TX0133C]
gi|314953835|ref|ZP_07856698.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium TX0133A]
gi|314993573|ref|ZP_07858928.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium TX0133B]
gi|314997788|ref|ZP_07862701.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium TX0133a01]
gi|313588232|gb|EFR67077.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium TX0133a01]
gi|313591950|gb|EFR70795.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium TX0133B]
gi|313594170|gb|EFR73015.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium TX0133A]
gi|313599694|gb|EFR78537.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium TX0133C]
gi|313640828|gb|EFS05408.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium TX0133a04]
Length = 284
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 2/106 (1%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
++T +P GDFN ++S G + + +E ++ V K+
Sbjct: 181 LETRVPLFFLGDFNNPVDSQGYYTVRESCLLLQDSYVVANEEGKAAT-VEKKIDGWEQNT 239
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + Y + +S H + IE D +
Sbjct: 240 -EKLRIDFIFVPEGMQVKKYQRIFDGIDSPIISDHYGVEIELDVNE 284
>gi|291515600|emb|CBK64810.1| Endonuclease/Exonuclease/phosphatase family [Alistipes shahii WAL
8301]
Length = 816
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 36/115 (31%), Gaps = 13/115 (11%)
Query: 21 IPFVIAGDFNRKIN---------SIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+++ GDFN + + L E+ + +
Sbjct: 702 QDWLMMGDFNSRSRADNWYYGYPENDTRLLVHNHILDHTNLKDIIAERYPGSFISSTYGN 761
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVS----YDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ ++ + I N+ +++ QS + S H P+ +++ ++
Sbjct: 762 ARIDYMYASPSMYARIVNALTVMDKWTTATQSPYVSNFYDPSDHRPILADFELKQ 816
>gi|212696938|ref|ZP_03305066.1| hypothetical protein ANHYDRO_01501 [Anaerococcus hydrogenalis DSM
7454]
gi|212676026|gb|EEB35633.1| hypothetical protein ANHYDRO_01501 [Anaerococcus hydrogenalis DSM
7454]
Length = 348
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 42/120 (35%), Gaps = 3/120 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + +++ K G ++ GDFN+++++ + + +
Sbjct: 229 QTKEIIDFINKEYKKGNYVLVGGDFNQELSAKFKKLPEGIWNPSPFPKEMLTKNIKLYYD 288
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT---RRSKLSTHCPLTIEYDFE 121
+ D +D ID + + + T + S H P+ +E+ +
Sbjct: 289 KNGKTSVVNDKPYTGKDAYLSTIDGFLATDNIKIKTIKTQTKENFQYSDHNPVVMEFVLK 348
>gi|22537705|ref|NP_688556.1| exodeoxyribonuclease [Streptococcus agalactiae 2603V/R]
gi|76788417|ref|YP_330186.1| exodeoxyribonuclease III [Streptococcus agalactiae A909]
gi|76799526|ref|ZP_00781659.1| exodeoxyribonuclease III [Streptococcus agalactiae 18RS21]
gi|77408314|ref|ZP_00785056.1| exodeoxyribonuclease III [Streptococcus agalactiae COH1]
gi|22534594|gb|AAN00429.1|AE014263_8 exodeoxyribonuclease [Streptococcus agalactiae 2603V/R]
gi|76563474|gb|ABA46058.1| exodeoxyribonuclease III [Streptococcus agalactiae A909]
gi|76585123|gb|EAO61748.1| exodeoxyribonuclease III [Streptococcus agalactiae 18RS21]
gi|77173077|gb|EAO76204.1| exodeoxyribonuclease III [Streptococcus agalactiae COH1]
Length = 275
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 16/143 (11%), Positives = 40/143 (27%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
L + + W K+A+ + + P + GD+N I + +
Sbjct: 136 LKRLADRQIWDIKYAEYLATLDSQKPVLATGDYNVAHKEIDLANPSSNRRSAGFTAEERQ 195
Query: 50 -----------GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + +R+++S +L N +
Sbjct: 196 GFTNLLAKGFTDTFRYLHGDVPNVYSWWAQRSRTSKIN-NTGWRIDYWLTSNRVADKITK 254
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+ + + H P+ +E +
Sbjct: 255 SEMIHSGDRQ--DHTPIILEIEL 275
>gi|288800479|ref|ZP_06405937.1| AP endonuclease domain protein [Prevotella sp. oral taxon 299 str.
F0039]
gi|288332692|gb|EFC71172.1| AP endonuclease domain protein [Prevotella sp. oral taxon 299 str.
F0039]
Length = 363
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 27/115 (23%), Gaps = 19/115 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + +P ++ GDFN N + F +
Sbjct: 263 QVKAVVSVLKKY--ENLPQIVCGDFNEWPNGYALNTLQKTLTNS------FVETGNGAGW 314
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R + N L F K S H P+ +
Sbjct: 315 SYHR-------SGMYVRIDNILCSKQFKPYKAKVDSEI----KTSDHYPIYCYLE 358
>gi|146318325|ref|YP_001198037.1| exonuclease III [Streptococcus suis 05ZYH33]
gi|145689131|gb|ABP89637.1| Exonuclease III [Streptococcus suis 05ZYH33]
Length = 168
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF-------------- 42
L + + W ++AD K+ + P + GD+N I +
Sbjct: 29 LKRLADRQIWDVQYADYLAKLDSHKPVLATGDYNVAHKEIDLANPASNRQSPGFTDEERQ 88
Query: 43 -WQKMDPDGLLIRFPQEKE----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + G F + +R+++S +L+ + +
Sbjct: 89 GFTNLLAKGFTDTFRHLHGDVLNAYTWWAQRSRTSKIN-NTGWRIDYWLVSDRIADKVSK 147
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+D+ + H P+ +E F
Sbjct: 148 SDMIDSGARQ--DHTPIVMEISF 168
>gi|325922786|ref|ZP_08184516.1| metal-dependent hydrolase [Xanthomonas gardneri ATCC 19865]
gi|325546728|gb|EGD17852.1| metal-dependent hydrolase [Xanthomonas gardneri ATCC 19865]
Length = 305
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 10/122 (8%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + P VIAGDFN +++ + + + + +
Sbjct: 187 RQVADLLDFIASN-SDQAPVVIAGDFNTAADALDL-EALRKGYGDSYGSVHRNSDATVST 244
Query: 64 NVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + +D+ ++ Y S H + +
Sbjct: 245 LNLHVFDKPARIDHVFFQQNRLLAREARILFDAPY------AEGRWASDHYGVWVRLQLA 298
Query: 122 KG 123
G
Sbjct: 299 PG 300
>gi|325279089|ref|YP_004251631.1| Endonuclease/exonuclease/phosphatase [Odoribacter splanchnicus DSM
20712]
gi|324310898|gb|ADY31451.1| Endonuclease/exonuclease/phosphatase [Odoribacter splanchnicus DSM
20712]
Length = 286
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 13/103 (12%), Positives = 25/103 (24%), Gaps = 4/103 (3%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P ++ GDFN + + + +
Sbjct: 187 PAILTGDFNVSEDWDAYKTITNNEFILKDAHKVAGKRTGVD---FTYHNFGKIPAEKCEK 243
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRS-KLSTHCPLTIEYDFEKG 123
+ ++S + LS H P +E + EK
Sbjct: 244 IDFIFVTPQIRVISSYIPFSQLNDTLFLSDHNPEIVELEIEKS 286
>gi|320175211|gb|EFW50320.1| Endonuclease/Exonuclease/phosphatase family protein [Shigella
dysenteriae CDC 74-1112]
Length = 253
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|288916264|ref|ZP_06410643.1| Endonuclease/exonuclease/phosphatase [Frankia sp. EUN1f]
gi|288352243|gb|EFC86441.1| Endonuclease/exonuclease/phosphatase [Frankia sp. EUN1f]
Length = 818
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 12/117 (10%)
Query: 5 QGEWLKKWADQKIKTG---IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q ++ + V+ GD N S L+ P +
Sbjct: 688 QATEVRNFVADLAAKSGNAARVVVLGDINDYQFSPTLATLTDNGALLKPLINDLPVNE-R 746
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
V N +LD+ +I K + V+ + SD + S H P I
Sbjct: 747 YSYVFDGNSQTLDHILISPTIKGY--SYGVVHVNAEFSD------QASDHDPQIIRI 795
>gi|284028360|ref|YP_003378291.1| endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
gi|283807653|gb|ADB29492.1| Endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
Length = 273
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 33/133 (24%), Gaps = 16/133 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ----- 57
+Q + D + +T +P V+AGDFN +S + +
Sbjct: 141 ERQALDIAA-LDARHRTALPTVLAGDFNATPDSASIRFLSGHQSLDGTSVHFHDAWTTRG 199
Query: 58 EKESTCNVIKRNKSSLD------YFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKL- 108
E + + R + + + +D
Sbjct: 200 EGPGHTWTTANPLAREEIATLIGQSPHHRRLDYIFVGSRHAHPDTQATIDTVDLVGVNPP 259
Query: 109 -STHCPLTIEYDF 120
S H L +
Sbjct: 260 LSDHYGLVADLTL 272
>gi|260584055|ref|ZP_05851803.1| endonuclease/exonuclease/phosphatase [Granulicatella elegans ATCC
700633]
gi|260158681|gb|EEW93749.1| endonuclease/exonuclease/phosphatase [Granulicatella elegans ATCC
700633]
Length = 362
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 36/133 (27%), Gaps = 17/133 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRK------------INSIGDTDDFWQKMDPDG 50
Q E L + + + + G ++ GDFN + + +
Sbjct: 233 KSQLEKLFHYMESEYEKGNYVIVGGDFNHDILLGKSPEVFQTSDEPQTWTHPFPVENLSK 292
Query: 51 LLIRFPQEKESTCNVIKRN--KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
Q R + F+I ++ DL +
Sbjct: 293 HFTLATQGLAQQKIPSARALDEGYQKGRTFVTLVDGFIISDNVQFNHVQAHDL---EFQH 349
Query: 109 STHCPLTIEYDFE 121
S H P+++ + +
Sbjct: 350 SDHNPVSMSFTLK 362
>gi|256827653|ref|YP_003151612.1| endonuclease/exonuclease/phosphatase family protein
[Cryptobacterium curtum DSM 15641]
gi|256583796|gb|ACU94930.1| endonuclease/exonuclease/phosphatase family protein
[Cryptobacterium curtum DSM 15641]
Length = 373
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 41/134 (30%), Gaps = 15/134 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +QQ + + TG + GD+N + D Q++ P ++
Sbjct: 242 IRAQQLALIGNIMKAEYDTGNYVICGGDWNHALAGSEDIYPSKQQVPPWVSILDDADLPT 301
Query: 61 STCNVIKRNKS-----------SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
V N S F+I ++ + + T S
Sbjct: 302 GFSIVKADNLSEVASCRGCDIPYEKGVTYTTTVDGFIISDNVQAYAENIDCGFTY----S 357
Query: 110 THCPLTIEYDFEKG 123
H P+ + ++ ++
Sbjct: 358 DHNPVKLTFELQEA 371
>gi|150863920|ref|XP_001382566.2| hypothetical protein PICST_30030 [Scheffersomyces stipitis CBS
6054]
gi|149385176|gb|ABN64537.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 320
Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 26/104 (25%), Gaps = 8/104 (7%)
Query: 13 ADQKIKTGIPFV-IAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ + GDFN + + + D F ++ S
Sbjct: 219 IKELASDHSHVCCVLGDFNAEPDHVA-YSILASGNLLDTATNCFKRDGFQYTF------S 271
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + I+ + + + S H PL+
Sbjct: 272 GFSKEESESTIDYIWVTLPARILKFHVMNNEFNDRNFSDHRPLS 315
>gi|330943652|gb|EGH45968.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 245
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 32/118 (27%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + L + +I G P ++AGDFN + + K
Sbjct: 144 RQQLKLLNELM-ARIPEGEPVIVAGDFNDWRRRADA-SLQGSGLHEVFVERFGAPAKSFP 201
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N+ S S S LS H PL +E
Sbjct: 202 ARW------------PLLCLDRIYVRNATSHRPKVLSSRPW--SHLSDHAPLAVELTL 245
>gi|327191270|gb|EGE58313.1| putative phosphatase protein [Rhizobium etli CNPAF512]
Length = 659
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 42/138 (30%), Gaps = 26/138 (18%)
Query: 4 QQGEWLKKWADQKIKTG-----------------IPFVIAGDFNRKINSIGDTDDF---- 42
+Q ++L + ++ G +VI GDFN + S
Sbjct: 523 RQLQFLNAQINAFVREGGSLTGAAEFDLPEPPLPEDYVILGDFNMEPESPEYCALAGAAG 582
Query: 43 --WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ ++ G + E+ + D+ + VS QS
Sbjct: 583 GYYGRVARIGTPVDAFAALEAYRPESYSWMNPEDH-GERMHLDYCFVSCGL--VSRLQSA 639
Query: 101 LDTRRSKLSTHCPLTIEY 118
+S+ S H PL +E
Sbjct: 640 RIDTQSQGSDHFPLWVEI 657
>gi|326798265|ref|YP_004316084.1| endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
gi|326549029|gb|ADZ77414.1| Endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
Length = 259
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 23/119 (19%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E + K PF++ GD N + Q + Q +++
Sbjct: 164 RQAEIIDSIIK---KASHPFILTGDMNAEPQHETLAVLSKQLI--------ATQGRDAFT 212
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
K +DY ++D+ K +I+ V + S H P+ + +
Sbjct: 213 YPTAPPKKKIDYIMLDKRLKASVIEAKVLPVLF------------SDHLPIVSTIEIAQ 259
>gi|302666957|ref|XP_003025073.1| hypothetical protein TRV_00731 [Trichophyton verrucosum HKI 0517]
gi|291189155|gb|EFE44462.1| hypothetical protein TRV_00731 [Trichophyton verrucosum HKI 0517]
Length = 1169
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 10/101 (9%), Positives = 24/101 (23%), Gaps = 3/101 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P + +GD + + + + N + +
Sbjct: 814 RPLIESGDIDVLYQHDQLNLQMVAGLAFQYYMEGPVTFPPTY---RYDNGTDEYDTSEKQ 870
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + Q T K S H P+ ++ +
Sbjct: 871 RIPAWCDRILWRGRILRQLAYKTAPLKFSDHRPVYATFECD 911
>gi|237797954|ref|ZP_04586415.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331020805|gb|EGI00862.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 291
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 22/113 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N N + + L + PQ + + + +
Sbjct: 186 AYIRELIGGYRHQVLMGDMNTHANDLLEHSPL------RDLGLLAPQIEATFPSWRPQR- 238
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+ + ++ +S H P+ +E
Sbjct: 239 ----------CLDHILLSPTLTLERVQVLAQP-----ISDHLPVAVEIRLPAS 276
>gi|296414577|ref|XP_002836975.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632822|emb|CAZ81166.1| unnamed protein product [Tuber melanosporum]
Length = 290
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 14/130 (10%), Positives = 30/130 (23%), Gaps = 13/130 (10%)
Query: 3 SQQGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + + + + G V+AGD N P K
Sbjct: 163 RESARMIVEEVREVLGEGEGRGVVLAGDMNSPEGDDAYKIFTASGSLLRDARADVPPAKR 222
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNS--------FSIVSYDQSDLDTRRS-KLSTH 111
+ I + + ++I +Y + S H
Sbjct: 223 YGHQ--MTFSGFGNEHEIPQRIDFVFAAEAKEDDEKAIWTITNYSVLENKFDDEIYSSDH 280
Query: 112 CPLTIEYDFE 121
P+ ++
Sbjct: 281 RPVVVDLILS 290
>gi|86359644|ref|YP_471536.1| putative endonuclease/exonuclease/phosphatase protein [Rhizobium
etli CFN 42]
gi|86283746|gb|ABC92809.1| putative endonuclease/exonuclease/phosphatase protein [Rhizobium
etli CFN 42]
Length = 239
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 32/140 (22%), Gaps = 30/140 (21%)
Query: 4 QQGEWLKKWADQKIKTG-----------------IPFVIAGDFNRKINSIGDTDDFWQKM 46
+Q ++L + ++ G ++I GDFN + S
Sbjct: 103 RQLQFLNGHINAFVQEGGSLTGGGELDLPELPLPEDYMIMGDFNMEPESPEYCALAGAGG 162
Query: 47 DPDGLLI------RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQ 98
G + + D+ + + S
Sbjct: 163 GYYGRVARIGTPIDAFAALGAYRPGSYSWMDPADH-GKRMHLDYCFVSCGLEGRLKSARI 221
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
S H P+ IE
Sbjct: 222 DTQSLG----SDHFPVWIEI 237
>gi|327304571|ref|XP_003236977.1| endonuclease/exonuclease/phosphatase [Trichophyton rubrum CBS
118892]
gi|326459975|gb|EGD85428.1| endonuclease/exonuclease/phosphatase [Trichophyton rubrum CBS
118892]
Length = 1163
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 11/101 (10%), Positives = 24/101 (23%), Gaps = 3/101 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P + +GD + + + + N + +
Sbjct: 808 RPLIESGDIDALYQHDQLNLQMVAGLAFQYYMEGPVTFPPTY---RYDNGTDEYDTSEKQ 864
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + Q T K S H P+ ++ E
Sbjct: 865 RIPAWCDRILWRGRILRQLAYKTAPLKFSDHRPVYATFECE 905
>gi|226225662|ref|YP_002759768.1| hypothetical protein GAU_0256 [Gemmatimonas aurantiaca T-27]
gi|226088853|dbj|BAH37298.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 257
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 28/116 (24%), Gaps = 20/116 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L D +P ++ GDFN + S + E +
Sbjct: 159 QVKALGAVLDTVR---LPVILLGDFNDQPASRTLQHW------QPRFRVAAKPESDRFTF 209
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
K +D+ ++ S H P+ +
Sbjct: 210 SSTEPKQEIDHILLAPARAWGEATVRVITDPI-----------TSDHRPIVAQLRL 254
>gi|148664807|gb|EDK97223.1| deoxyribonuclease I, isoform CRA_c [Mus musculus]
Length = 245
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 5/119 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D K G + GDFN + + + ++ + + +
Sbjct: 126 EIDALYDVYLDVWQKWGLEDIMFMGDFNAGCSYVTSSQWSSIRLRTSPIFQWLIPDS-AD 184
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEYD 119
V + + V + ++ NS + + +S H P+ +
Sbjct: 185 TTVTSTHCAYDRIVVAGALLQAAVVPNSAVPFDFQAEYGLSNQLAEAISDHYPVEVTLR 243
>gi|167762675|ref|ZP_02434802.1| hypothetical protein BACSTE_01033 [Bacteroides stercoris ATCC
43183]
gi|167699015|gb|EDS15594.1| hypothetical protein BACSTE_01033 [Bacteroides stercoris ATCC
43183]
Length = 370
Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats.
Identities = 13/103 (12%), Positives = 21/103 (20%), Gaps = 17/103 (16%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+ P ++ GDFN +S + L F + K
Sbjct: 285 ASPHPVLVCGDFNSLPSSYTYHRF------SESLKDGFKTGGHGYMYTYRYGKR------ 332
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
Y S H P+ +
Sbjct: 333 -MLRIDYAFHSPELECTDY----YSPNLDLCSDHNPVIFTVKY 370
>gi|118098153|ref|XP_425256.2| PREDICTED: similar to deoxyribonuclease I-like 2 short form [Gallus
gallus]
Length = 278
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
V GDFN + + +D ++ + + + V K + + V
Sbjct: 178 DNIVFLGDFNADCSYVKQSDWASIRLRSSDVFKWLIPDS-ADTTVGKSDCAYDRIVVCGA 236
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
K ++ NS ++ ++ ++ + L S H P+ ++
Sbjct: 237 KLKRSIVPNSATVYNFQRAFQLEQEEALAVSDHYPVEVKL 276
>gi|19551901|ref|NP_599903.1| exonuclease III [Corynebacterium glutamicum ATCC 13032]
gi|21323437|dbj|BAB98064.1| Exonuclease III [Corynebacterium glutamicum ATCC 13032]
Length = 304
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 14/101 (13%), Positives = 21/101 (20%), Gaps = 2/101 (1%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTD--DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
AGDF ++ G D P+ R K+
Sbjct: 201 DEATQVAGAGDFFGAVDYEGTRRREATTDPAWFDVARRLQPEGDGPYTWWTYRGKAFDTG 260
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
D + + S H PL +
Sbjct: 261 AGWRIDYQAATAAMLERAERSWVDKAAAYDLRWSDHSPLNV 301
>gi|229828382|ref|ZP_04454451.1| hypothetical protein GCWU000342_00443 [Shuttleworthia satelles DSM
14600]
gi|229792976|gb|EEP29090.1| hypothetical protein GCWU000342_00443 [Shuttleworthia satelles DSM
14600]
Length = 390
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 14/129 (10%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFN---------RKINSIGDTDD-FWQKMDPDGLLIR 54
Q + L++ +++ + G + GDFN G + D +
Sbjct: 265 QTKVLRELLEKETEAGNYVIAGGDFNQIFSNVDSSAFPLHEGKWEPGIINSADFGEGMQL 324
Query: 55 FPQEKESTCNVIKRNKSSLDYF-VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
++C + + D F+ + ++ S DL S H P
Sbjct: 325 LMDSGTASCRSLDHPLAGADQKDFQFYIIDGFICSENVTVESTQTQDL---NFHASDHNP 381
Query: 114 LTIEYDFEK 122
+ + +
Sbjct: 382 VVLRARLRE 390
>gi|221112376|ref|XP_002160726.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
Length = 511
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 18/164 (10%), Positives = 39/164 (23%), Gaps = 49/164 (29%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------FWQ-------------- 44
L+ ++ ++ GD N I D F++
Sbjct: 161 RLLQMRIISLMREKRNIIVVGDLNVSHKRIDSCDPCEICIQIFFFKVELLAVDAVVDLTV 220
Query: 45 ---------------------KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
D I P E+ + + ++ F D
Sbjct: 221 DKISEHIQIKGSESFSEKNVNNFLVDTFRIFHPNEQNAYTCWNTQTRARETNFGTRIDFI 280
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD--FEKGNV 125
+ + + S HCP+ +++ + N+
Sbjct: 281 LADHQLCTVLTNCVI----LADVQGSDHCPVVADFNILLKASNL 320
>gi|165874707|gb|ABY68236.1| DNA lyase [Beauveria caledonica]
Length = 559
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 33/156 (21%), Gaps = 43/156 (27%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD------------------DFW 43
+Q E L I G ++AGD N N + ++
Sbjct: 135 RQSFVEALDVRIRNLIAAGKQVIVAGDLNIIRNEMDSSNIAESLQKEGISMDEWQSMPTR 194
Query: 44 QKMDP--------------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ ++ + F + K +
Sbjct: 195 RILNQLLFEGTVVGDRDDDRERAVLWDICRCFHPTRLGMHTC-WDAKRKTRPANVGSRID 253
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S+ S HCP+
Sbjct: 254 YILCSDGLK--SWFVESNIQEGLMGSDHCPVYATMS 287
>gi|149199714|ref|ZP_01876746.1| endonuclease/exonuclease/phosphatase family protein [Lentisphaera
araneosa HTCC2155]
gi|149137231|gb|EDM25652.1| endonuclease/exonuclease/phosphatase family protein [Lentisphaera
araneosa HTCC2155]
Length = 319
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 16/144 (11%), Positives = 35/144 (24%), Gaps = 24/144 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFN------------------RKINSIGDTDDFWQKM 46
+ + L K P + GDFN K+
Sbjct: 170 EIKKLLKVISSLPDKEAPVFVVGDFNEPSHLDWTEAAAKAGRHPIKVAYPNSVAMVKAGF 229
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+I + K + K+ +DR + + + ++ +
Sbjct: 230 SDSYRVIYPDEMKNPGLTWSPKYKADDPTTHLDRIDFVYFKGKGLKVTDAKIIGENSENA 289
Query: 107 ------KLSTHCPLTIEYDFEKGN 124
S H + + +K +
Sbjct: 290 DIVVTPYPSDHRAVVATFTLDKAS 313
>gi|332524529|ref|ZP_08400736.1| endonuclease/exonuclease/phosphatase [Rubrivivax benzoatilyticus
JA2]
gi|332107845|gb|EGJ09069.1| endonuclease/exonuclease/phosphatase [Rubrivivax benzoatilyticus
JA2]
Length = 251
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 14/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L + +++ P V+AGDFN + + + + ++
Sbjct: 148 RRQLEQLCELVRREVPDDAPLVVAGDFNDWRD--RAHPVLERGLGLSEVFVQAH------ 199
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R+ + + N+ LS H PL E
Sbjct: 200 ----GRSARTFPARWPLLRLDRIYVRNTRGHRPLPLPRRPWA--HLSDHAPLAAEIAL 251
>gi|149370646|ref|ZP_01890335.1| endonuclease/exonuclease/phosphatase family protein [unidentified
eubacterium SCB49]
gi|149356197|gb|EDM44754.1| endonuclease/exonuclease/phosphatase family protein [unidentified
eubacterium SCB49]
Length = 350
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 33/120 (27%), Gaps = 18/120 (15%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + D K K+ P +I GDFN S ++ + M+ + E+ S
Sbjct: 249 FKDQAIQVSAILDHKNKSNYPSIITGDFNNTAFS-YVYNELTEDMNDAYI------EQGS 301
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ +D T + S H P+ +
Sbjct: 302 GLGTTYSFDGFPFRIDFI-----------LAEKYFDILSFTTIKETFSDHHPILSTLGWN 350
>gi|152994652|ref|YP_001339487.1| exodeoxyribonuclease III Xth [Marinomonas sp. MWYL1]
gi|150835576|gb|ABR69552.1| exodeoxyribonuclease III Xth [Marinomonas sp. MWYL1]
Length = 258
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 37/137 (27%), Gaps = 23/137 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQ 44
+ E K + + F+ G N + I + F +
Sbjct: 126 RFMEGFKNHLIKTRRKRREFIFCGTANVARSPIDVSSWFVNQRNSGFLPEERKWINEIFN 185
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+++ + ++ + ++ + + Q +
Sbjct: 186 ELEYIDAFRQVNKQDKQYTWWPDYERAWKLDEG--GRLDYQITTPGIKNLI--QGGTIYK 241
Query: 105 RSKLSTHCPLTIEYDFE 121
+ S H PL +EY+ +
Sbjct: 242 GQRFSDHAPLIMEYNID 258
>gi|116193731|ref|XP_001222678.1| hypothetical protein CHGG_06583 [Chaetomium globosum CBS 148.51]
gi|88182496|gb|EAQ89964.1| hypothetical protein CHGG_06583 [Chaetomium globosum CBS 148.51]
Length = 646
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 17/157 (10%), Positives = 27/157 (17%), Gaps = 45/157 (28%)
Query: 4 QQG--EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------DDFWQKMDP 48
+Q + + G + GD N + DDF+
Sbjct: 167 RQAYINAIDVRVRNLVAMGKQVFLCGDLNIIRSEQDTAGLAERLRKEEMTLDDFFSTPSR 226
Query: 49 -------------------------DGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDN 82
L F + R +
Sbjct: 227 CFLNHIVFGGHVAGEREEGREEPVLWDLCREFHPTRPGMYTCWDTRKNA--RPGNFGSRI 284
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S HCP+ D
Sbjct: 285 DYVLCSSGIKDW--FIDSNIQEGLLGSDHCPVYATID 319
>gi|332665289|ref|YP_004448077.1| endonuclease/exonuclease/phosphatase [Haliscomenobacter hydrossis
DSM 1100]
gi|332334103|gb|AEE51204.1| Endonuclease/exonuclease/phosphatase [Haliscomenobacter hydrossis
DSM 1100]
Length = 347
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 22/123 (17%)
Query: 2 LSQQGE----WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ 57
+ + +++ + P ++ GDFN S +K+D L
Sbjct: 243 FKRAAQGRASQVEELMAHLANSPYPVLVCGDFNDIPQSYTYHRI-RKKLDDAFL------ 295
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
S + + D F+ V + + S H P+
Sbjct: 296 --SSGSGIGITYAGRIPG----LRIDYIFTDQRFTPVYCE-----RGKVSFSDHRPVIAV 344
Query: 118 YDF 120
Sbjct: 345 IKL 347
>gi|291298052|ref|YP_003509330.1| endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
gi|290567272|gb|ADD40237.1| Endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
Length = 305
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 26/112 (23%), Gaps = 6/112 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ +K+ +P ++ GDFN + T D Q +
Sbjct: 193 EKSAAQIKELVASF---DVPVLVTGDFNTAQGTAPYTTLVDGTTLEDTWETAEQQLTPAY 249
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+D L ++ + S H +
Sbjct: 250 GTFNGWKPEPVDGGD---RIDWVLATPGTAVAKTAVNTWSVDGLTPSDHWAV 298
>gi|261406650|ref|YP_003242891.1| endonuclease/exonuclease/phosphatase [Paenibacillus sp. Y412MC10]
gi|261283113|gb|ACX65084.1| Endonuclease/exonuclease/phosphatase [Paenibacillus sp. Y412MC10]
Length = 272
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 21/118 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + A + P ++ GDFN + +S F ++ + F ++
Sbjct: 176 QAQEIIDLAS---SSQGPALLMGDFNAEPDSSE----FQLLLNSGLFVNSFEGIDDAYTF 228
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
L + + +++ S H P+ + F++
Sbjct: 229 P---------VINPSATIDYILTSPNVRHANQRVI-----QTEASDHLPIAADVVFKR 272
>gi|302501420|ref|XP_003012702.1| hypothetical protein ARB_00953 [Arthroderma benhamiae CBS 112371]
gi|291176262|gb|EFE32062.1| hypothetical protein ARB_00953 [Arthroderma benhamiae CBS 112371]
Length = 1163
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 10/101 (9%), Positives = 24/101 (23%), Gaps = 3/101 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P + +GD + + + + N + +
Sbjct: 808 RPLIESGDIDVLYQHDQLNLQMVAGLAFQYYMEGPVTFPPTY---RYDNGTDEYDTSEKQ 864
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + Q T K S H P+ ++ +
Sbjct: 865 RIPAWCDRILWRGRILRQLAYKTAPLKFSDHRPVYATFECD 905
>gi|302533764|ref|ZP_07286106.1| large secreted protein [Streptomyces sp. C]
gi|302442659|gb|EFL14475.1| large secreted protein [Streptomyces sp. C]
Length = 613
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 28/118 (23%), Gaps = 14/118 (11%)
Query: 5 QGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + Q + + GD N S + E+ S
Sbjct: 506 QAQAVNGFVKQLLAVDKNAAVLAVGDINDFEFSGTAKALEDGGALYSAIKSLPKAERYSY 565
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYD 119
+ L S +YD ++ S H P + +
Sbjct: 566 VY-----------QGNAQVLDQILTSPSIKNFAYDSVHINAEFSAQNSDHDPQVLRFR 612
>gi|145294844|ref|YP_001137665.1| hypothetical protein cgR_0791 [Corynebacterium glutamicum R]
gi|140844764|dbj|BAF53763.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 304
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 14/101 (13%), Positives = 21/101 (20%), Gaps = 2/101 (1%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTD--DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
AGDF ++ G D P+ R K+
Sbjct: 201 DEATQVAGAGDFFGAVDYEGTRRREATTDPAWFDVARRLQPEGDGPYTWWTYRGKAFDTG 260
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
D + + S H PL +
Sbjct: 261 AGWRIDYQAATAAMLERAERSWVDKATAYDLRWSDHSPLNV 301
>gi|288905926|ref|YP_003431148.1| 3'-exo-deoxyribonuclease [Streptococcus gallolyticus UCN34]
gi|306831945|ref|ZP_07465100.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325978892|ref|YP_004288608.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|288732652|emb|CBI14224.1| putative 3'-exo-deoxyribonuclease [Streptococcus gallolyticus
UCN34]
gi|304425871|gb|EFM28988.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325178820|emb|CBZ48864.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 275
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 41/143 (28%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
L + E W +K+AD ++ P + GD+N I + P
Sbjct: 136 LKRLAERQIWDEKYADYLAELDQVKPVLATGDYNVAHKEIDLAHPSSNRRSPGFTDEERA 195
Query: 50 -----------GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ +R+K+S +L + +
Sbjct: 196 GFTNLLAKGFTDTFRYIHGDIPDVYSWWAQRSKTSKIN-NSGWRIDYWLTSSRIADKITK 254
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+D+ + H P+ +E D
Sbjct: 255 SEMIDSGARQ--DHTPIVLEIDL 275
>gi|116491630|ref|YP_811174.1| exonuclease III [Oenococcus oeni PSU-1]
gi|116092355|gb|ABJ57509.1| Exonuclease III [Oenococcus oeni PSU-1]
Length = 273
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 37/132 (28%), Gaps = 22/132 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPD-- 49
+ + + + I + +GD N I + + + ++
Sbjct: 146 DQFRHYISDLSERKI-VIFSGDLNVAHEEIDLKNSSSNHNSAGFTDQEREKFSRLLSAGF 204
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + +RN+ + +++ NS +DT
Sbjct: 205 IDTWRLQHPKEIAYSWWSQRNRLAKTN-NAGWRIDYYIVSNSAKEKIVKTGMIDTGTRA- 262
Query: 109 STHCPLTIEYDF 120
H P+ ++
Sbjct: 263 -DHAPIYLQMKL 273
>gi|329851089|ref|ZP_08265846.1| endonuclease/Exonuclease/phosphatase family protein [Asticcacaulis
biprosthecum C19]
gi|328839935|gb|EGF89507.1| endonuclease/Exonuclease/phosphatase family protein [Asticcacaulis
biprosthecum C19]
Length = 310
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 20/117 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L + ++ V+ GDFN + G D + +
Sbjct: 209 RRQFSRLARSLERIADED--LVLVGDFNTPPCASGMGDFMDETGLHAAPM---------- 256
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
S L + + + S S H P+ ++
Sbjct: 257 --WRGTWPSFLPSVLRIGIDNLLASPDRVL------SRRQVGGFTGSDHRPVVVDIR 305
>gi|315299279|gb|EFU58531.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 16-3]
Length = 253
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|311064847|ref|YP_003971573.1| calcineurin-like phosphoesterase [Bifidobacterium bifidum PRL2010]
gi|310867167|gb|ADP36536.1| Calcineurin-like phosphoesterase [Bifidobacterium bifidum PRL2010]
Length = 1597
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 33/138 (23%), Gaps = 23/138 (16%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L + D+ + GDFN + K +
Sbjct: 738 QADALLAFTDEVKSDLKLEKVFLVGDFNAYYAEKPIQKIVAAGYTDLSEQVSEKTGKYTY 797
Query: 63 CNV-------IKRNKSSLDYFVIDRDNK------NFLIDNSFSIVSYDQSDL-------- 101
SLD+ + + NS V+ + S
Sbjct: 798 AYTVKDESGNTNGGVGSLDHIFANEAAMRSVTGADIWNINSVESVALEYSRYNYNAKNLY 857
Query: 102 DTRRSKLSTHCPLTIEYD 119
+ + S H P+ I
Sbjct: 858 QADQFRASDHDPVIIGIS 875
>gi|310287972|ref|YP_003939231.1| the 5'-nucleotidase domain [Bifidobacterium bifidum S17]
gi|309251909|gb|ADO53657.1| conserved hypothetical protein with the 5'-nucleotidase domain
[Bifidobacterium bifidum S17]
Length = 1597
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 33/138 (23%), Gaps = 23/138 (16%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L + D+ + GDFN + K +
Sbjct: 738 QADALLAFTDEVKSDLKLEKVFLVGDFNAYYAEKPIQKIVAAGYTDLSEQVSEKTGKYTY 797
Query: 63 CNV-------IKRNKSSLDYFVIDRDNK------NFLIDNSFSIVSYDQSDL-------- 101
SLD+ + + NS V+ + S
Sbjct: 798 AYTVKDESGNTNGGVGSLDHIFANEAAMRSVTGADIWNINSVESVALEYSRYNYNAKNLY 857
Query: 102 DTRRSKLSTHCPLTIEYD 119
+ + S H P+ I
Sbjct: 858 QADQFRASDHDPVIIGIS 875
>gi|224283762|ref|ZP_03647084.1| 5'-Nucleotidase domain protein [Bifidobacterium bifidum NCIMB
41171]
gi|313140916|ref|ZP_07803109.1| 5'-Nucleotidase domain-containing protein [Bifidobacterium bifidum
NCIMB 41171]
gi|313133426|gb|EFR51043.1| 5'-Nucleotidase domain-containing protein [Bifidobacterium bifidum
NCIMB 41171]
Length = 1597
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 19/138 (13%), Positives = 33/138 (23%), Gaps = 23/138 (16%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L + D+ + GDFN + K +
Sbjct: 738 QADALLAFTDEVKSDLKLEKVFLVGDFNAYYAEKPIQKIVAAGYTDLSEQVSEKTGKYTY 797
Query: 63 CNV-------IKRNKSSLDYFVIDRDNK------NFLIDNSFSIVSYDQSDL-------- 101
SLD+ + + NS V+ + S
Sbjct: 798 AYTVKDESGNTNGGVGSLDHIFANEAAMRSVTGADIWNINSVESVALEYSRYNYNAKNLY 857
Query: 102 DTRRSKLSTHCPLTIEYD 119
+ + S H P+ I
Sbjct: 858 QADQFRASDHDPVIIGIS 875
>gi|167822275|ref|ZP_02453746.1| hypothetical protein Bpseu9_01274 [Burkholderia pseudomallei 9]
Length = 120
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 18/120 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ +TG P V+AGDFN N + ++ + + +
Sbjct: 19 RQMHWIAHWIERNARTG-PLVLAGDFNDWRNDS---IPLFGEIGLSEVATLLGESGRTFP 74
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + + + LS H P +
Sbjct: 75 AFSPALALDKMFVRGMTPLEWRAPGDE--------------TAWLSDHLPYVARLRLDPA 120
>gi|110640994|ref|YP_668722.1| hypothetical protein ECP_0804 [Escherichia coli 536]
gi|191174511|ref|ZP_03036010.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli F11]
gi|300992083|ref|ZP_07179785.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 200-1]
gi|110342586|gb|ABG68823.1| hypothetical protein YbhP [Escherichia coli 536]
gi|190905224|gb|EDV64864.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli F11]
gi|300305412|gb|EFJ59932.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 200-1]
gi|324011114|gb|EGB80333.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 60-1]
Length = 253
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|117622972|ref|YP_851885.1| metal-dependent hydrolase [Escherichia coli APEC O1]
gi|115512096|gb|ABJ00171.1| Metal-dependent hydrolase [Escherichia coli APEC O1]
Length = 253
Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|312885260|ref|ZP_07744937.1| hypothetical protein VIBC2010_03195 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367067|gb|EFP94642.1| hypothetical protein VIBC2010_03195 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 452
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 32/120 (26%), Gaps = 10/120 (8%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINS--IGDTDDFWQKMDPDGLLIRFPQEKESTC------- 63
+ I + AGDFN N+ + Q
Sbjct: 333 LTKNIPEDEAVIYAGDFNVDKNNHFSEYQLMLSILEVEPPTFAGYTQGTFDPSINKYAAA 392
Query: 64 -NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
N S LDY + ++ + + SD LS H + + FE+
Sbjct: 393 KYSGGTNTSYLDYVFTSKRHRPATQKLNTVRLKQRVSDSTWGEWHLSDHFSVDGHFVFEE 452
>gi|294620081|ref|ZP_06699434.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium E1679]
gi|291593678|gb|EFF25199.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium E1679]
Length = 277
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 2/106 (1%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
++T +P GDFN ++S G + + +E ++ V K+
Sbjct: 174 LETRVPLFFLGDFNNPVDSQGYYTVRESCLLLQDSYVVANEEGKAAT-VEKKIDGWEQNT 232
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + Y + +S H + IE D +
Sbjct: 233 -EKLRIDFIFVPEGMQVKKYQRIFDGIDSPIISDHYGVEIELDVNE 277
>gi|260854081|ref|YP_003227972.1| putative DNase [Escherichia coli O26:H11 str. 11368]
gi|257752730|dbj|BAI24232.1| predicted DNase [Escherichia coli O26:H11 str. 11368]
gi|323155689|gb|EFZ41860.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli EPECa14]
Length = 253
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|253996227|ref|YP_003048291.1| Endonuclease/exonuclease/phosphatase [Methylotenera mobilis JLW8]
gi|253982906|gb|ACT47764.1| Endonuclease/exonuclease/phosphatase [Methylotenera mobilis JLW8]
Length = 251
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 26/116 (22%), Gaps = 14/116 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ +K + + I P ++AGDFN G + +
Sbjct: 146 KQQLILIKDYIQRHIPAHSPLIVAGDFNDWGMRSGRHFSHQVGLQEVFAHQNGKPARSFP 205
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S KLS H L+
Sbjct: 206 SW------------LPILRLDRIYTRGFKIQHVEVHSGAHF--VKLSDHAMLSATL 247
>gi|225024152|ref|ZP_03713344.1| hypothetical protein EIKCOROL_01020 [Eikenella corrodens ATCC
23834]
gi|224943177|gb|EEG24386.1| hypothetical protein EIKCOROL_01020 [Eikenella corrodens ATCC
23834]
Length = 251
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 14/114 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + + +I + P ++AGDFN F Q + D +
Sbjct: 146 KRQYRTIADYIEHQIPSDAPLILAGDFNDWRQRSCSR--FGQLLGLDEAFAHLSAGRP-- 201
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ I V S +LS H PL+
Sbjct: 202 ----------KTFPARMPILSLDRIYTRHLTVLNAVSHQGLPWQQLSDHLPLSA 245
>gi|150009698|ref|YP_001304441.1| hypothetical protein BDI_3113 [Parabacteroides distasonis ATCC
8503]
gi|255013007|ref|ZP_05285133.1| hypothetical protein B2_03823 [Bacteroides sp. 2_1_7]
gi|149938122|gb|ABR44819.1| conserved hypothetical protein with
endonuclease/exonuclease/phosphatase family domain
[Parabacteroides distasonis ATCC 8503]
Length = 304
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 37/138 (26%), Gaps = 30/138 (21%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ + + K + +P ++ GDFN ++ + +D G++ Q +
Sbjct: 168 AESAKLILKKLKE-FPEKLPAILTGDFNV-----DQHNESYLLLDNSGIMRDSYQIADFR 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------------- 107
+ D + + F + Y R
Sbjct: 222 YVPNGTFNAFHADRKTDSRIDHLFLTKEFDVKKYGVLTDTYRSEAKDAKNEQNANFPKEV 281
Query: 108 ---------LSTHCPLTI 116
S H P+ I
Sbjct: 282 SMQKHVARVPSDHFPVMI 299
>gi|330952069|gb|EGH52329.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae Cit 7]
Length = 291
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 22/113 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N N + + L + PQ + + + +
Sbjct: 186 AYIRELIGGYRHQVLMGDMNTHANDLLEHSPL------RDLGLLAPQIEATFPSWRPQR- 238
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+ + ++ +S H P+ +E
Sbjct: 239 ----------CLDHILLSPTLTLERVQVLAQP-----ISDHLPVAVEIRLPDS 276
>gi|311894103|dbj|BAJ26511.1| hypothetical protein KSE_06710 [Kitasatospora setae KM-6054]
Length = 339
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 10/116 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ E L + V+ GDFN ++ D + GL +
Sbjct: 231 RRWAEDLHELTAAAPGRTRNAVLLGDFNATLDHRPMRD-----LVDTGLSDTHEELGAGL 285
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
N + L + + V+ + L S H + E
Sbjct: 286 FPTWPENHPDFRGVPPVIQIDHVLHGPALTAVTVSEHALPR-----SDHRAVVAEL 336
>gi|307151701|ref|YP_003887085.1| Endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 7822]
gi|306981929|gb|ADN13810.1| Endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 7822]
Length = 262
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 27/113 (23%), Gaps = 5/113 (4%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ + + Q T + DFN S+ F + + L E +
Sbjct: 151 AKLITERLSQLDLTDSYLFVTADFNATPGSLP-RTTFERPLSNGIKLYDALAEIPLEKQL 209
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
N D+ + S H P+ E+
Sbjct: 210 SFNN----FTEQPTDAIDTIYYDSRSRLQQAKVDQQKWEGLIPSDHFPVIGEF 258
>gi|83815707|ref|YP_446788.1| endonuclease/exonuclease/phosphatase family protein, putative
[Salinibacter ruber DSM 13855]
gi|83757101|gb|ABC45214.1| endonuclease/exonuclease/phosphatase family protein, putative
[Salinibacter ruber DSM 13855]
Length = 320
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 20/128 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------TDDFWQKMDPDGLLI----R 54
Q + + GIP ++ GDFN ++S + D Q + L
Sbjct: 184 QARVVNDLYRRLADRGIPTLLLGDFNSSLSSGEEGGQAGAEDATMQHILAGTDLRSAVNT 243
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ S ++D+ + + S HC +
Sbjct: 244 ASADTASATYPADAPARTIDHIFYPPQFFEAVDTQRWCGRPAP----------PSDHCAV 293
Query: 115 TIEYDFEK 122
T
Sbjct: 294 TAALRLPS 301
>gi|85704270|ref|ZP_01035373.1| extracellular nuclease [Roseovarius sp. 217]
gi|85671590|gb|EAQ26448.1| extracellular nuclease [Roseovarius sp. 217]
Length = 1682
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 16/129 (12%)
Query: 6 GEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L W + ++ GDFN D L+ F ++E+
Sbjct: 1547 AGELTTWLETGYNGTGTDNALLLGDFNAYAKEDPVQTI-ADDPDYVDLIDSFIGQEEAFS 1605
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LST 110
+ + +LD + D + + ++ + DL S+ S
Sbjct: 1606 FIFDGQQGTLDQALASSDIAGLVTGVTEWHINAQEPDLLNYNSQFNNPGFFSPDVFASSD 1665
Query: 111 HCPLTIEYD 119
H PL + D
Sbjct: 1666 HDPLIVGLD 1674
>gi|238591986|ref|XP_002392771.1| hypothetical protein MPER_07607 [Moniliophthora perniciosa FA553]
gi|215459287|gb|EEB93701.1| hypothetical protein MPER_07607 [Moniliophthora perniciosa FA553]
Length = 114
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 4/104 (3%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ + V+AGDFN +++ F M L P E+ V + LD+
Sbjct: 13 EKDSEANIVVAGDFNEFVHTRSVFASFEGIMHEVEELAGVPPEE-RYTYVFDQFSEQLDH 71
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I +++ + + + ++S H P
Sbjct: 72 MFISGAIGKRVVEAE---HIHVNNWSPSLTVRVSDHDPSVARIR 112
>gi|153839235|ref|ZP_01991902.1| endonuclease/exonuclease/phosphatase [Vibrio parahaemolyticus
AQ3810]
gi|149747230|gb|EDM58218.1| endonuclease/exonuclease/phosphatase [Vibrio parahaemolyticus
AQ3810]
Length = 434
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 11/125 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I V +GDFN + GD +
Sbjct: 306 QRQFQQMRTMAQSLNIPNNETVVYSGDFNVNKLKFPGDYQQMIANLSAMEPQYSGYTAST 365
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ +L ++ N + + S++ + +D + LS H
Sbjct: 366 FDPRINNFAGEALSGGENVEYLDYVMVSNEYGVKSFNDNRVDVPRSTAEGLWKHYNLSDH 425
Query: 112 CPLTI 116
P++
Sbjct: 426 FPVSA 430
>gi|126641246|ref|YP_001084230.1| putative extracellular nuclease [Acinetobacter baumannii ATCC
17978]
gi|126387130|gb|ABO11628.1| putative extracellular nuclease [Acinetobacter baumannii ATCC
17978]
Length = 298
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 37/145 (25%), Gaps = 27/145 (18%)
Query: 4 QQGEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + +W + ++ GD N + Q ++
Sbjct: 121 KAVDQIVQWLAKNPTQVPKQNALLVGDMNSYAKEAPILAFEKANYKVLLNDAKVGQGAQA 180
Query: 62 TCNVIK--------RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD------------- 100
V +LD+ + D D ++ ++ D+
Sbjct: 181 YSYVFGVASDANGNGGAGNLDHAIADADLYPKVVRTFAWHINADEPTVLDYNEEYKTDEQ 240
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ ++ D
Sbjct: 241 KALFYGEDAYRSSDHDPVIVDLDLN 265
>gi|330967692|gb|EGH67952.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. actinidiae str. M302091]
Length = 380
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 32/132 (24%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP------ 56
+Q + D+ G P++I GDFN Q++
Sbjct: 248 QKQIAATETLLDKLEGGGTPWLIGGDFNLLPLGQYQRLPEQQRISYTADSELHTLWEKYP 307
Query: 57 -------QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + DR S VS DT +S
Sbjct: 308 MIPNNTESSGTDRSQWLTHFPNDSRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--IS 365
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 366 DHLPVIGRFLLP 377
>gi|282892485|ref|ZP_06300819.1| hypothetical protein pah_c260o038 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281497767|gb|EFB40131.1| hypothetical protein pah_c260o038 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 346
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 9/123 (7%), Positives = 25/123 (20%), Gaps = 20/123 (16%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTD------------DFWQKMDPDGLLIRFPQEKESTC 63
K+ +P +I D N + + +
Sbjct: 221 KMAKRLPVIITADLNTFPHRQDIKKFPAYDGDYLHRLLTSAGLLNAQNTSLLGFLGPLST 280
Query: 64 NVIKRN--------KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
L + + +++ + + S H P+
Sbjct: 281 YTNDDGETKKGGFDNRFLSTGTPGVFLDHVYVGGGITVLLHAIEPAKVDQQFPSDHLPVI 340
Query: 116 IEY 118
++
Sbjct: 341 VDL 343
>gi|325498038|gb|EGC95897.1| hypothetical protein ECD227_2135 [Escherichia fergusonii ECD227]
Length = 242
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 139 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 185
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 186 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 242
>gi|306812808|ref|ZP_07447001.1| hypothetical protein ECNC101_12867 [Escherichia coli NC101]
gi|305853571|gb|EFM54010.1| hypothetical protein ECNC101_12867 [Escherichia coli NC101]
Length = 253
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAVLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|295689993|ref|YP_003593686.1| endonuclease/exonuclease/phosphatase [Caulobacter segnis ATCC
21756]
gi|295431896|gb|ADG11068.1| Endonuclease/exonuclease/phosphatase [Caulobacter segnis ATCC
21756]
Length = 323
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 12/117 (10%), Positives = 27/117 (23%), Gaps = 12/117 (10%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + ++ GDFN + D L +
Sbjct: 215 RQQAQSAMLVKAASQFDRRTLIVTGDFNSTP-------WSFTLKHQDKALGLERWSRALP 267
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + +++ V + + S H P+ + +
Sbjct: 268 SWPSGQFSRVAAAPAPFLPIDHVYAGSAWRAVKVE-----RGPAIGSDHRPIIVTFR 319
>gi|260901207|ref|ZP_05909602.1| endonuclease/exonuclease/phosphatase [Vibrio parahaemolyticus
AQ4037]
gi|308106699|gb|EFO44239.1| endonuclease/exonuclease/phosphatase [Vibrio parahaemolyticus
AQ4037]
Length = 442
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 11/125 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I V +GDFN + GD +
Sbjct: 314 QRQFQQMRTMAQSLNIPNNETVVYSGDFNVNKLKFPGDYQQMIANLSAMEPQYSGYTAST 373
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ +L ++ N + + S++ + +D + LS H
Sbjct: 374 FDPRINNFAGEALSGGENVEYLDYVMVSNEYGVKSFNDNRVDVPRSTAEGLWKHYNLSDH 433
Query: 112 CPLTI 116
P++
Sbjct: 434 FPVSA 438
>gi|225159097|ref|ZP_03725404.1| endonuclease/exonuclease/phosphatase [Opitutaceae bacterium TAV2]
gi|224802303|gb|EEG20568.1| endonuclease/exonuclease/phosphatase [Opitutaceae bacterium TAV2]
Length = 262
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 20/118 (16%)
Query: 5 QGEWLKKWADQKIKT-----GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q + + + + + KT +P V+ GDFN + T +++ G P +
Sbjct: 153 QVDKVFDYLEARQKTTGPGWAMPPVVCGDFNAADSPQDATASLLSQLNHFGGYALHPLDG 212
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ T + R L+ + + RS LS H P+ +E
Sbjct: 213 KRTF----------PSPLPSRSLDFVLVPEKQQVTKSEV-----VRSYLSDHRPVMVE 255
>gi|15800541|ref|NP_286553.1| hypothetical protein Z1009 [Escherichia coli O157:H7 EDL933]
gi|15830122|ref|NP_308895.1| hypothetical protein ECs0868 [Escherichia coli O157:H7 str. Sakai]
gi|16128758|ref|NP_415311.1| conserved protein, endo/exonuclease/phosphatase family PFAM PF03372
[Escherichia coli str. K-12 substr. MG1655]
gi|24112158|ref|NP_706668.1| hypothetical protein SF0740 [Shigella flexneri 2a str. 301]
gi|26246763|ref|NP_752803.1| hypothetical protein c0873 [Escherichia coli CFT073]
gi|30062275|ref|NP_836446.1| hypothetical protein S0781 [Shigella flexneri 2a str. 2457T]
gi|74311333|ref|YP_309752.1| hypothetical protein SSON_0769 [Shigella sonnei Ss046]
gi|89107641|ref|AP_001421.1| predicted DNase [Escherichia coli str. K-12 substr. W3110]
gi|91209822|ref|YP_539808.1| putative DNase [Escherichia coli UTI89]
gi|110804791|ref|YP_688311.1| hypothetical protein SFV_0773 [Shigella flexneri 5 str. 8401]
gi|168764306|ref|ZP_02789313.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4501]
gi|168787004|ref|ZP_02812011.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC869]
gi|168799936|ref|ZP_02824943.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC508]
gi|170080449|ref|YP_001729769.1| DNase [Escherichia coli str. K-12 substr. DH10B]
gi|170684095|ref|YP_001742893.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli SMS-3-5]
gi|191169284|ref|ZP_03031034.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli B7A]
gi|193064436|ref|ZP_03045517.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli E22]
gi|193069403|ref|ZP_03050358.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli E110019]
gi|194428175|ref|ZP_03060718.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli B171]
gi|194433120|ref|ZP_03065402.1| endonuclease/exonuclease/phosphatase family protein [Shigella
dysenteriae 1012]
gi|209918036|ref|YP_002292120.1| endonuclease/exonuclease/phosphatase [Escherichia coli SE11]
gi|215485878|ref|YP_002328309.1| predicted DNase [Escherichia coli O127:H6 str. E2348/69]
gi|217324324|ref|ZP_03440408.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. TW14588]
gi|218553374|ref|YP_002386287.1| putative metal-dependent hydrolase [Escherichia coli IAI1]
gi|218557695|ref|YP_002390608.1| metal-dependent hydrolase [Escherichia coli S88]
gi|218688576|ref|YP_002396788.1| putative metal-dependent hydrolase [Escherichia coli ED1a]
gi|218694264|ref|YP_002401931.1| putative metal-dependent hydrolase [Escherichia coli 55989]
gi|218704168|ref|YP_002411687.1| putative metal-dependent hydrolase [Escherichia coli UMN026]
gi|227884248|ref|ZP_04002053.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli 83972]
gi|237707251|ref|ZP_04537732.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|238900049|ref|YP_002925845.1| putative DNase [Escherichia coli BW2952]
gi|256021140|ref|ZP_05435005.1| putative DNase [Shigella sp. D9]
gi|256023614|ref|ZP_05437479.1| putative DNase [Escherichia sp. 4_1_40B]
gi|260843033|ref|YP_003220811.1| putative DNase [Escherichia coli O103:H2 str. 12009]
gi|260866957|ref|YP_003233359.1| putative DNase [Escherichia coli O111:H- str. 11128]
gi|261225437|ref|ZP_05939718.1| putative DNase [Escherichia coli O157:H7 str. FRIK2000]
gi|261258594|ref|ZP_05951127.1| putative DNase [Escherichia coli O157:H7 str. FRIK966]
gi|291281787|ref|YP_003498605.1| hypothetical protein G2583_1018 [Escherichia coli O55:H7 str.
CB9615]
gi|293404090|ref|ZP_06648084.1| ybhP protein [Escherichia coli FVEC1412]
gi|293409167|ref|ZP_06652743.1| ybhP protein [Escherichia coli B354]
gi|293414069|ref|ZP_06656718.1| ybhP protein [Escherichia coli B185]
gi|293433051|ref|ZP_06661479.1| ybhP protein [Escherichia coli B088]
gi|298379871|ref|ZP_06989476.1| ybhP protein [Escherichia coli FVEC1302]
gi|300816436|ref|ZP_07096658.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 107-1]
gi|300898278|ref|ZP_07116629.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 198-1]
gi|300907118|ref|ZP_07124784.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 84-1]
gi|300920037|ref|ZP_07136496.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 115-1]
gi|300993265|ref|ZP_07180312.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 45-1]
gi|301020719|ref|ZP_07184787.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 69-1]
gi|301024514|ref|ZP_07188190.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 196-1]
gi|301051290|ref|ZP_07198116.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 185-1]
gi|301306923|ref|ZP_07212967.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 124-1]
gi|307137414|ref|ZP_07496770.1| hypothetical protein EcolH7_04690 [Escherichia coli H736]
gi|307313800|ref|ZP_07593417.1| Endonuclease/exonuclease/phosphatase [Escherichia coli W]
gi|309797967|ref|ZP_07692346.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 145-7]
gi|312969189|ref|ZP_07783396.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli 2362-75]
gi|331641303|ref|ZP_08342438.1| putative cytoplasmic protein [Escherichia coli H736]
gi|331646007|ref|ZP_08347110.1| putative cytoplasmic protein [Escherichia coli M605]
gi|331651793|ref|ZP_08352812.1| putative cytoplasmic protein [Escherichia coli M718]
gi|331656807|ref|ZP_08357769.1| putative cytoplasmic protein [Escherichia coli TA206]
gi|331672300|ref|ZP_08373091.1| putative cytoplasmic protein [Escherichia coli TA280]
gi|332282366|ref|ZP_08394779.1| conserved hypothetical protein [Shigella sp. D9]
gi|77416769|sp|P0AAW3|YBHP_ECO57 RecName: Full=Uncharacterized protein ybhP
gi|77416770|sp|P0AAW2|YBHP_ECOL6 RecName: Full=Uncharacterized protein ybhP
gi|77416771|sp|P0AAW1|YBHP_ECOLI RecName: Full=Uncharacterized protein ybhP
gi|77416772|sp|P0AAW4|YBHP_SHIFL RecName: Full=Uncharacterized protein ybhP
gi|12513779|gb|AAG55161.1|AE005259_12 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|26107162|gb|AAN79346.1|AE016757_250 Hypothetical protein ybhP [Escherichia coli CFT073]
gi|1787008|gb|AAC73877.1| conserved protein, endo/exonuclease/phosphatase family PFAM PF03372
[Escherichia coli str. K-12 substr. MG1655]
gi|4062347|dbj|BAA35449.1| predicted DNase [Escherichia coli str. K12 substr. W3110]
gi|13360327|dbj|BAB34291.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|24050995|gb|AAN42375.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30040520|gb|AAP16252.1| hypothetical protein S0781 [Shigella flexneri 2a str. 2457T]
gi|73854810|gb|AAZ87517.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|91071396|gb|ABE06277.1| putative DNase [Escherichia coli UTI89]
gi|110614339|gb|ABF03006.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|169888284|gb|ACB01991.1| predicted DNase [Escherichia coli str. K-12 substr. DH10B]
gi|170521813|gb|ACB19991.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli SMS-3-5]
gi|189365678|gb|EDU84094.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4501]
gi|189373043|gb|EDU91459.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC869]
gi|189377721|gb|EDU96137.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC508]
gi|190900673|gb|EDV60472.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli B7A]
gi|192928898|gb|EDV82511.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli E22]
gi|192957356|gb|EDV87804.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli E110019]
gi|194413735|gb|EDX30014.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli B171]
gi|194418617|gb|EDX34704.1| endonuclease/exonuclease/phosphatase family protein [Shigella
dysenteriae 1012]
gi|209775978|gb|ACI86301.1| hypothetical protein ECs0868 [Escherichia coli]
gi|209775980|gb|ACI86302.1| hypothetical protein ECs0868 [Escherichia coli]
gi|209775982|gb|ACI86303.1| hypothetical protein ECs0868 [Escherichia coli]
gi|209775984|gb|ACI86304.1| hypothetical protein ECs0868 [Escherichia coli]
gi|209911295|dbj|BAG76369.1| endonuclease/exonuclease/phosphatase [Escherichia coli SE11]
gi|215263950|emb|CAS08290.1| predicted DNase [Escherichia coli O127:H6 str. E2348/69]
gi|217320545|gb|EEC28969.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. TW14588]
gi|218350996|emb|CAU96700.1| putative metal-dependent hydrolase [Escherichia coli 55989]
gi|218360142|emb|CAQ97691.1| putative metal-dependent hydrolase [Escherichia coli IAI1]
gi|218364464|emb|CAR02146.1| putative metal-dependent hydrolase [Escherichia coli S88]
gi|218426140|emb|CAR06960.1| putative metal-dependent hydrolase [Escherichia coli ED1a]
gi|218431265|emb|CAR12143.1| putative metal-dependent hydrolase [Escherichia coli UMN026]
gi|222032521|emb|CAP75260.1| Uncharacterized protein ybhP [Escherichia coli LF82]
gi|226898461|gb|EEH84720.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|227839000|gb|EEJ49466.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli 83972]
gi|238862335|gb|ACR64333.1| predicted DNase [Escherichia coli BW2952]
gi|257758180|dbj|BAI29677.1| predicted DNase [Escherichia coli O103:H2 str. 12009]
gi|257763313|dbj|BAI34808.1| predicted DNase [Escherichia coli O111:H- str. 11128]
gi|260450063|gb|ACX40485.1| Endonuclease/exonuclease/phosphatase [Escherichia coli DH1]
gi|281600115|gb|ADA73099.1| Metal-dependent hydrolase [Shigella flexneri 2002017]
gi|284920642|emb|CBG33705.1| putative endonuclease/exonuclease/phosphatase [Escherichia coli
042]
gi|290761660|gb|ADD55621.1| hypothetical protein G2583_1018 [Escherichia coli O55:H7 str.
CB9615]
gi|291323870|gb|EFE63292.1| ybhP protein [Escherichia coli B088]
gi|291428676|gb|EFF01701.1| ybhP protein [Escherichia coli FVEC1412]
gi|291434127|gb|EFF07100.1| ybhP protein [Escherichia coli B185]
gi|291469635|gb|EFF12119.1| ybhP protein [Escherichia coli B354]
gi|294491262|gb|ADE90018.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli IHE3034]
gi|298279569|gb|EFI21077.1| ybhP protein [Escherichia coli FVEC1302]
gi|299880367|gb|EFI88578.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 196-1]
gi|300297049|gb|EFJ53434.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 185-1]
gi|300358067|gb|EFJ73937.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 198-1]
gi|300398530|gb|EFJ82068.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 69-1]
gi|300401163|gb|EFJ84701.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 84-1]
gi|300406673|gb|EFJ90211.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 45-1]
gi|300412984|gb|EFJ96294.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 115-1]
gi|300531126|gb|EFK52188.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 107-1]
gi|300837849|gb|EFK65609.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 124-1]
gi|306906440|gb|EFN36954.1| Endonuclease/exonuclease/phosphatase [Escherichia coli W]
gi|307552635|gb|ADN45410.1| endonuclease/exonuclease/phosphatase family [Escherichia coli ABU
83972]
gi|307627800|gb|ADN72104.1| hypothetical protein UM146_13695 [Escherichia coli UM146]
gi|308118455|gb|EFO55717.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 145-7]
gi|309701068|emb|CBJ00366.1| putative endonuclease/exonuclease/phosphatase [Escherichia coli
ETEC H10407]
gi|312286591|gb|EFR14504.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli 2362-75]
gi|312945308|gb|ADR26135.1| putative DNase [Escherichia coli O83:H1 str. NRG 857C]
gi|313650312|gb|EFS14724.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri 2a str. 2457T]
gi|315060026|gb|ADT74353.1| predicted DNase [Escherichia coli W]
gi|315135440|dbj|BAJ42599.1| hypothetical protein ECDH1ME8569_0743 [Escherichia coli DH1]
gi|315257776|gb|EFU37744.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 85-1]
gi|315287185|gb|EFU46597.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 110-3]
gi|315292598|gb|EFU51950.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 153-1]
gi|315619791|gb|EFV00310.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli 3431]
gi|320178501|gb|EFW53466.1| Endonuclease/Exonuclease/phosphatase family protein [Shigella
boydii ATCC 9905]
gi|320192735|gb|EFW67376.1| Endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC1212]
gi|320196715|gb|EFW71338.1| Endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli WV_060327]
gi|320637652|gb|EFX07444.1| hypothetical protein ECO5101_22645 [Escherichia coli O157:H7 str.
G5101]
gi|320642778|gb|EFX11979.1| hypothetical protein ECO9389_02401 [Escherichia coli O157:H- str.
493-89]
gi|320648234|gb|EFX16889.1| hypothetical protein ECO2687_18506 [Escherichia coli O157:H- str. H
2687]
gi|320659694|gb|EFX27250.1| hypothetical protein ECO5905_24328 [Escherichia coli O55:H7 str.
USDA 5905]
gi|320664164|gb|EFX31315.1| hypothetical protein ECOSU61_00998 [Escherichia coli O157:H7 str.
LSU-61]
gi|323159720|gb|EFZ45698.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli E128010]
gi|323165708|gb|EFZ51494.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
sonnei 53G]
gi|323172094|gb|EFZ57733.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli LT-68]
gi|323175592|gb|EFZ61187.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli 1180]
gi|323185054|gb|EFZ70420.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli 1357]
gi|323190916|gb|EFZ76183.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli RN587/1]
gi|323379415|gb|ADX51683.1| Endonuclease/exonuclease/phosphatase [Escherichia coli KO11]
gi|323938145|gb|EGB34405.1| endonuclease/Exonuclease/phosphatase [Escherichia coli E1520]
gi|323942663|gb|EGB38828.1| endonuclease/Exonuclease/phosphatase [Escherichia coli E482]
gi|323947052|gb|EGB43065.1| endonuclease/Exonuclease/phosphatase [Escherichia coli H120]
gi|323953547|gb|EGB49413.1| endonuclease/Exonuclease/phosphatase [Escherichia coli H252]
gi|323958079|gb|EGB53788.1| endonuclease/Exonuclease/phosphatase [Escherichia coli H263]
gi|323971955|gb|EGB67176.1| endonuclease/Exonuclease/phosphatase [Escherichia coli TA007]
gi|324009624|gb|EGB78843.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 57-2]
gi|324018520|gb|EGB87739.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 117-3]
gi|324116214|gb|EGC10136.1| endonuclease/Exonuclease/phosphatase [Escherichia coli E1167]
gi|326338324|gb|EGD62153.1| Endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. 1125]
gi|326346302|gb|EGD70040.1| Endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. 1044]
gi|330910533|gb|EGH39043.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli AA86]
gi|331038101|gb|EGI10321.1| putative cytoplasmic protein [Escherichia coli H736]
gi|331044759|gb|EGI16886.1| putative cytoplasmic protein [Escherichia coli M605]
gi|331050071|gb|EGI22129.1| putative cytoplasmic protein [Escherichia coli M718]
gi|331055055|gb|EGI27064.1| putative cytoplasmic protein [Escherichia coli TA206]
gi|331070495|gb|EGI41859.1| putative cytoplasmic protein [Escherichia coli TA280]
gi|332091084|gb|EGI96174.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
dysenteriae 155-74]
gi|332104718|gb|EGJ08064.1| conserved hypothetical protein [Shigella sp. D9]
gi|332759689|gb|EGJ89992.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri 4343-70]
gi|332760512|gb|EGJ90801.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri 2747-71]
gi|332763280|gb|EGJ93522.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri K-671]
gi|332767952|gb|EGJ98138.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri 2930-71]
gi|333006910|gb|EGK26406.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri VA-6]
gi|333007139|gb|EGK26631.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri K-218]
gi|333021184|gb|EGK40440.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri K-304]
Length = 253
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|308095136|ref|ZP_07663177.1| endonuclease/exonuclease/phosphatase [Vibrio parahaemolyticus
Peru-466]
gi|308089221|gb|EFO38916.1| endonuclease/exonuclease/phosphatase [Vibrio parahaemolyticus
Peru-466]
Length = 434
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 11/125 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I V +GDFN + GD +
Sbjct: 306 QRQFQQMRTMAQSLNIPNNETVVYSGDFNVNKLKFPGDYQQMIANLSAMEPQYSGYTAST 365
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ +L ++ N + + S++ + +D + LS H
Sbjct: 366 FDPRINNFAGEALSGGENVEYLDYVMVSNEYGVKSFNDNRVDVPRSTAEGLWKHYNLSDH 425
Query: 112 CPLTI 116
P++
Sbjct: 426 FPVSA 430
>gi|300947129|ref|ZP_07161343.1| conserved domain protein [Escherichia coli MS 116-1]
gi|300957738|ref|ZP_07169925.1| conserved domain protein [Escherichia coli MS 175-1]
gi|301646220|ref|ZP_07246116.1| conserved domain protein [Escherichia coli MS 146-1]
gi|300315554|gb|EFJ65338.1| conserved domain protein [Escherichia coli MS 175-1]
gi|300453207|gb|EFK16827.1| conserved domain protein [Escherichia coli MS 116-1]
gi|301075557|gb|EFK90363.1| conserved domain protein [Escherichia coli MS 146-1]
Length = 123
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 20 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 66
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 67 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 123
>gi|255524521|ref|ZP_05391476.1| Endonuclease/exonuclease/phosphatase [Clostridium carboxidivorans
P7]
gi|296186020|ref|ZP_06854425.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
carboxidivorans P7]
gi|255511817|gb|EET88102.1| Endonuclease/exonuclease/phosphatase [Clostridium carboxidivorans
P7]
gi|296049288|gb|EFG88717.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
carboxidivorans P7]
Length = 328
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 35/125 (28%), Gaps = 5/125 (4%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L Q + D KT +P + GDFN N T I + K
Sbjct: 196 LEVQAAQANELLDGPGKTELPLIFIGDFNSNANENETTYANLIAAGFKDSWIEAGKNKGF 255
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-----QSDLDTRRSKLSTHCPLTI 116
TC ++ D + V + Q D R S H + +
Sbjct: 256 TCCQDSDLLNAESSLNERIDFILLKNKKYWGAVKAEAIGQSQLDRTKTRLWPSDHAGVFV 315
Query: 117 EYDFE 121
+ +
Sbjct: 316 KLKLK 320
>gi|269929041|ref|YP_003321362.1| Endonuclease/exonuclease/phosphatase [Sphaerobacter thermophilus
DSM 20745]
gi|269788398|gb|ACZ40540.1| Endonuclease/exonuclease/phosphatase [Sphaerobacter thermophilus
DSM 20745]
Length = 635
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 29/114 (25%), Gaps = 25/114 (21%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + P ++ GD N + +S G ++ E+ +
Sbjct: 543 QVTELIDF----WGGRTPALLLGDLNAEPDSEVLQALAEAGFVDLGEVL----GPEAWTS 594
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R L + + D S+ S H P+
Sbjct: 595 EDHR------------RIDYILATTGIELRDIEILD-----SRASDHRPVVARL 631
>gi|225869981|ref|YP_002745928.1| exodeoxyribonuclease [Streptococcus equi subsp. equi 4047]
gi|225699385|emb|CAW92824.1| exodeoxyribonuclease [Streptococcus equi subsp. equi 4047]
Length = 275
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 31/134 (23%), Gaps = 31/134 (23%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ Q + P + GD+N I + P
Sbjct: 150 ADYLAQ-LDAQKPVLATGDYNVAHKEIDLANPASNHRSPGFTDEERLGFTNLLNRGFTDT 208
Query: 52 LIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS- 109
+ + +R+K+S +L N + S
Sbjct: 209 FRFIHGDIPNVYSWWAQRSKTSKLN-NTGWRIDYWLTSNRL------IDKVSRSEMISSG 261
Query: 110 ---THCPLTIEYDF 120
H P+ +E D
Sbjct: 262 ERQDHTPILLEIDL 275
>gi|297198840|ref|ZP_06916237.1| large secreted protein [Streptomyces sviceus ATCC 29083]
gi|197711239|gb|EDY55273.1| large secreted protein [Streptomyces sviceus ATCC 29083]
Length = 607
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 33/117 (28%), Gaps = 9/117 (7%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ + + + + GD N S + ++ DG L +
Sbjct: 496 QQATLVNAFVKDILDTQKNADVIALGDINDFEFSD-----TAKILEGDGELWSAIKSLPR 550
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + + F+ S + ++S H P + +
Sbjct: 551 SERYTYDYQGNQQVLDQILVSPSIRRGCDFAYDSVHINSEF--NDQISDHDPQVLRF 605
>gi|77554891|gb|ABA97687.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1070
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 35/127 (27%), Gaps = 19/127 (14%)
Query: 5 QGEWLKKWADQK----IKTGIPFVIAGDFNRKINSIGD--------TDDFWQKMDPDGLL 52
Q + +K+ + + P +I GDFN + D + L
Sbjct: 185 QADRKEKFLQELTDVMLTQSDPVIIGGDFNLVRFAEEKSNGQINKRWADKFNSFISTAEL 244
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + NK + +F ++ QS S H
Sbjct: 245 RELHRVGDKYTWT---NKQDDPVREVLDRVLVSDSWEAFYPLTLVQSLTRVG----SDHN 297
Query: 113 PLTIEYD 119
P+ + +
Sbjct: 298 PILVNLE 304
>gi|23098760|ref|NP_692226.1| hypothetical protein OB1305 [Oceanobacillus iheyensis HTE831]
gi|22776987|dbj|BAC13261.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 373
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 31/112 (27%), Gaps = 18/112 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ + G ++ GD N + N+ ++ + N +R
Sbjct: 191 MQEIMSEGNYNILVGDMNARPNATEIG-PLFRDFVDVWGVHDTDGNTFPAHNPDRR---- 245
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
L + + + + S H P+T E + GN
Sbjct: 246 ---------IDYILASKRMEVKTAEVKNEVE----SSDHLPVTAEIEIVAGN 284
>gi|66808471|ref|XP_637958.1| hypothetical protein DDB_G0285991 [Dictyostelium discoideum AX4]
gi|60466398|gb|EAL64454.1| hypothetical protein DDB_G0285991 [Dictyostelium discoideum AX4]
Length = 316
Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 34/128 (26%), Gaps = 22/128 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD-----------------PDGLLIRFPQ 57
+K IP ++ GDFN + +D F
Sbjct: 188 ATLKPQIPLILVGDFNSNDYQKPIENLISSTIDINFAIKYIQLLEIPIRDDIAFQTLFNT 247
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-----SDLDTRRSKLSTHC 112
+ + C + + + I+ F ++ S + + S H
Sbjct: 248 KTIANCKIGPDSTFTGFDCAYSETIDYIFINQQFKAKTFVVFNNHPSKVTKNSTIASDHF 307
Query: 113 PLTIEYDF 120
P+ + F
Sbjct: 308 PIVADLKF 315
>gi|114799308|ref|YP_761397.1| endonuclease/exonuclease/phosphatase family protein [Hyphomonas
neptunium ATCC 15444]
gi|114739482|gb|ABI77607.1| endonuclease/exonuclease/phosphatase family protein [Hyphomonas
neptunium ATCC 15444]
Length = 354
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 35/125 (28%), Gaps = 11/125 (8%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQE-- 58
QQ + A + G V+ GD+N ++ + +D+ D
Sbjct: 220 QQVREVLDLAQSHYQQGKAVVLGGDWNMRLAATDFAYQSDESALFWVHDFPRDALRPGWQ 279
Query: 59 ---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + F+ + ++ + DL ++ H P+
Sbjct: 280 IVIDPAVATTRTNEQPYKSGVNYTTIIDGFIASPNVTVEAVRGLDL---GFAITDHQPVV 336
Query: 116 IEYDF 120
+
Sbjct: 337 ATFRL 341
>gi|77406522|ref|ZP_00783574.1| exodeoxyribonuclease III [Streptococcus agalactiae H36B]
gi|77411367|ref|ZP_00787714.1| exodeoxyribonuclease III [Streptococcus agalactiae CJB111]
gi|77162540|gb|EAO73504.1| exodeoxyribonuclease III [Streptococcus agalactiae CJB111]
gi|77174861|gb|EAO77678.1| exodeoxyribonuclease III [Streptococcus agalactiae H36B]
Length = 275
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 16/143 (11%), Positives = 40/143 (27%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
L + + W K+A+ + + P + GD+N I + +
Sbjct: 136 LKRLADRQIWDIKYAEYLATLDSQKPVLATGDYNVAHKEIDLANPSSNRRSAGFTDEERQ 195
Query: 50 -----------GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + +R+++S +L N +
Sbjct: 196 GFTNLLAKGFTDTFRYLHGDVPNVYSWWAQRSRTSKIN-NTGWRIDYWLTSNRVADKITK 254
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+ + + H P+ +E +
Sbjct: 255 SEMIHSGDRQ--DHTPIILEIEL 275
>gi|323705197|ref|ZP_08116773.1| Endonuclease/exonuclease/phosphatase [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535623|gb|EGB25398.1| Endonuclease/exonuclease/phosphatase [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 231
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 21/100 (21%), Gaps = 19/100 (19%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P ++ GDFN + Q V
Sbjct: 150 PVIMTGDFNETPGEEAY-----STIIRVLKDAVNTQNSAFHTYVDGCEN---------VR 195
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + S D S LS H P+ +
Sbjct: 196 IDYIMHSKGMRVESIKAID-----STLSDHLPVVASLRCD 230
>gi|320547311|ref|ZP_08041602.1| exodeoxyribonuclease [Streptococcus equinus ATCC 9812]
gi|320448009|gb|EFW88761.1| exodeoxyribonuclease [Streptococcus equinus ATCC 9812]
Length = 275
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 25/139 (17%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------- 49
+Q W +K+AD ++ P + GD+N N I + +
Sbjct: 141 ERQI-WDEKYADYLAELDQTKPVLATGDYNVAHNEIDLANPNSNRRSAGFTDEERAGFTN 199
Query: 50 -------GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + +R+K+S +L N + +
Sbjct: 200 LLAKGFTDTFRYLHGDIPNVYSWWAQRSKTSKIN-NTGWRIDYWLASNRIADKITKSEMI 258
Query: 102 DTRRSKLSTHCPLTIEYDF 120
D+ + H P+ +E D
Sbjct: 259 DSGTRQ--DHTPIVLEIDL 275
>gi|57157233|dbj|BAD83646.1| deoxyribonuclease I [Pagrus major]
Length = 281
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
V+ GDFN N + +D ++ D + + N + V
Sbjct: 183 IVLLGDFNTDCNYVSGSDWQHIRLFTDKSFRWLIGNEVDSTVSQTTNCAYDRIVVTTDML 242
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
K L+ S + ++ + L S H P+ +E
Sbjct: 243 KGVLL-GSAQVYNFMTDLKLSHSLTLAVSDHYPVEVEL 279
>gi|327265943|ref|XP_003217767.1| PREDICTED: deoxyribonuclease gamma-like [Anolis carolinensis]
Length = 305
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 5/111 (4%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
Q K+ F+ GDFN + ++ I ++ T +
Sbjct: 170 IKQHWKS-ENFIFMGDFNAGCGYVARRHWKDIRLRNHNEFIWLIDDQTDTTVKASTHCPY 228
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDFE 121
+ N + NS +I + T L S H P+ E+ +
Sbjct: 229 DRIVLHGDKLINAAVPNSANIFDFQGVFAMTEAQALAVSDHFPV--EFQLK 277
>gi|259500789|ref|ZP_05743691.1| exodeoxyribonuclease III [Lactobacillus iners DSM 13335]
gi|302190760|ref|ZP_07267014.1| exonuclease III [Lactobacillus iners AB-1]
gi|312871137|ref|ZP_07731235.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 3008A-a]
gi|312872693|ref|ZP_07732758.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2062A-h1]
gi|312874955|ref|ZP_07734974.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2053A-b]
gi|329919752|ref|ZP_08276703.1| exodeoxyribonuclease III [Lactobacillus iners SPIN 1401G]
gi|259167483|gb|EEW51978.1| exodeoxyribonuclease III [Lactobacillus iners DSM 13335]
gi|311089700|gb|EFQ48125.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2053A-b]
gi|311091735|gb|EFQ50114.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2062A-h1]
gi|311093151|gb|EFQ51497.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 3008A-a]
gi|328937099|gb|EGG33527.1| exodeoxyribonuclease III [Lactobacillus iners SPIN 1401G]
Length = 275
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIRFPQE 58
K+ P + +GD+N I F + + +
Sbjct: 154 AKLDQNKPVIASGDYNVAHQEIDLKHPETNHHNAGFTDEERKGFSKLLSLGFIDTFRYIN 213
Query: 59 ---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ +R ++S +L+ + +DT K HCP+
Sbjct: 214 GDITDVYSWWSQRIRTSKTN-NAGWRIDYYLVSQRLADKIEQSKMIDTGDRK--DHCPIL 270
Query: 116 IEYDF 120
++ D
Sbjct: 271 LKIDL 275
>gi|167917123|ref|ZP_02504214.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei BCC215]
Length = 270
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 18/120 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ +TG P V+AGDFN N + ++ + + +
Sbjct: 169 RQMHWIAHWIERNARTG-PLVLAGDFNDWRNDS---IPLFGEIGLSEVATLLGESGRTFP 224
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + + + LS H P +
Sbjct: 225 AFSPALALDKMFVRGMTPLEWRAPGDE--------------TAWLSDHLPYVARLRLDPA 270
>gi|167909082|ref|ZP_02496173.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 112]
Length = 270
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 18/120 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ +TG P V+AGDFN N + ++ + + +
Sbjct: 169 RQMHWIAHWIERNARTG-PLVLAGDFNDWRNDS---IPLFGEIGLSEVATLLGESGRTFP 224
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + + + LS H P +
Sbjct: 225 AFSPALALDKMFVRGMTPLEWRAPGDE--------------TAWLSDHLPYVARLRLDPA 270
>gi|333009779|gb|EGK29228.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri K-272]
gi|333020444|gb|EGK39707.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri K-227]
Length = 253
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|295675193|ref|YP_003603717.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. CCGE1002]
gi|295435036|gb|ADG14206.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. CCGE1002]
Length = 265
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ G P V+AGDFN N +++ + +
Sbjct: 166 RQMNWIAHWIAKEAPDG-PLVLAGDFNDWRNDSV---PLFREHGLQEVATLLGE------ 215
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + V + Q +T LS H P + E
Sbjct: 216 ------PARTFPAFSPALSLDKMFVRGMQPVEWIQPTQETAW--LSDHLPYMAKLRLE 265
>gi|297190600|ref|ZP_06907998.1| sphingomyelinase C [Streptomyces pristinaespiralis ATCC 25486]
gi|297150553|gb|EDY61820.2| sphingomyelinase C [Streptomyces pristinaespiralis ATCC 25486]
Length = 333
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 33/131 (25%), Gaps = 14/131 (10%)
Query: 1 MLSQQGEWLKKWAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
M S+Q + + D + I V+AGDFN +
Sbjct: 201 MRSRQFRAMDAFLDGKNIPASEQVVVAGDFNVDSRTSEYASMLADGGLVGADARTGHPYS 260
Query: 60 ESTCNVI-------KRNKSSLDYFVIDRDNKNF--LIDNSFSIVSYDQSDLDTRRSK--- 107
T + LD+ + + + S S +
Sbjct: 261 FDTSENSIAAERYPDDPREDLDHVLHRAGHAKPSGWTNEVIKERSAPWSVSSWGTTYTYT 320
Query: 108 -LSTHCPLTIE 117
LS H P+
Sbjct: 321 NLSDHYPVIAS 331
>gi|222152632|ref|YP_002561807.1| exodeoxyribonuclease [Streptococcus uberis 0140J]
gi|222113443|emb|CAR41130.1| exodeoxyribonuclease [Streptococcus uberis 0140J]
Length = 275
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 25/139 (17%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------- 49
+Q EW K+A+ + P + GD+N + I + +
Sbjct: 141 ERQ-EWDIKYAEYLASLDRNKPVLATGDYNVAHHEIDLANPASNRRSAGFTDEERAGFTA 199
Query: 50 -------GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + +R+K+S +L N + +
Sbjct: 200 LLAKGFTDTFRYLHGDIPNVYTWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVIKSEMI 258
Query: 102 DTRRSKLSTHCPLTIEYDF 120
+ + H P+ +E D
Sbjct: 259 HSGERQ--DHTPILLEIDL 275
>gi|256838623|ref|ZP_05544133.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256739542|gb|EEU52866.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 304
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 37/138 (26%), Gaps = 30/138 (21%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ + + K + +P ++ GDFN ++ + +D G++ Q +
Sbjct: 168 AESAKLILKKLKE-FPEKLPAILTGDFNV-----DQHNESYLLLDNSGIMRDSYQIADFR 221
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------------- 107
+ D + + F + Y R
Sbjct: 222 YVPNGTFNAFHADRKTDSRIDHLFLTKEFDVKKYGVLTDTYRSEAKDAKNEQNANFPKEV 281
Query: 108 ---------LSTHCPLTI 116
S H P+ I
Sbjct: 282 SMQKHVARVPSDHFPVMI 299
>gi|254427925|ref|ZP_05041632.1| endonuclease/exonuclease/phosphatase family [Alcanivorax sp. DG881]
gi|196194094|gb|EDX89053.1| endonuclease/exonuclease/phosphatase family [Alcanivorax sp. DG881]
Length = 310
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 42/121 (34%), Gaps = 7/121 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR-FPQEKES 61
Q L W + P ++AGDFN + +D + L + F EKE
Sbjct: 192 QTQAALLANWVTMQTS---PLIVAGDFNTTWDEGRFSDSHERFEQSGLLNLWSFLPEKER 248
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI---VSYDQSDLDTRRSKLSTHCPLTIEY 118
+ +LD+ + K + + S YD + +S H L + +
Sbjct: 249 YSFRHRCRPQALDHIWVSPGLKPSVSKVAVSRGNAGRYDSLYGSQGVAPISDHDALVVYF 308
Query: 119 D 119
+
Sbjct: 309 E 309
>gi|330818610|ref|YP_004362315.1| Endonuclease/exonuclease/phosphatase family protein [Burkholderia
gladioli BSR3]
gi|327371003|gb|AEA62359.1| Endonuclease/exonuclease/phosphatase family protein [Burkholderia
gladioli BSR3]
Length = 268
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W + P V+AGDFN N + ++ + +
Sbjct: 169 RQMTWIAHWI-EHHAQDGPLVLAGDFNDWRNDSV---PLFGEIGLSEVATLLGE------ 218
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + +D+ L + D LS H P +
Sbjct: 219 -SGRTFPAFSPALALDKMFVRGLTPLEWQ---APTDDTAW----LSDHLPYIARLRLD 268
>gi|225705642|gb|ACO08667.1| Deoxyribonuclease gamma precursor [Oncorhynchus mykiss]
Length = 306
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 2/100 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GDFN + + ++ D + T + + +
Sbjct: 163 DNIMILGDFNADGSYVTKKGMTNIRIRSDKKFHWVIGDDVDTTANTSNDHTYDRIVMYGD 222
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
D ++ NS +Y ++ + L S H P+ +E
Sbjct: 223 DMLEAMVPNSAKPFNYHKAFHLSEAMALSISDHYPVEVEL 262
>gi|313887924|ref|ZP_07821603.1| exodeoxyribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312846090|gb|EFR33472.1| exodeoxyribonuclease III [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 275
Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 34/123 (27%), Gaps = 22/123 (17%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRFPQEKES 61
+ P + GDFN I + + + G F
Sbjct: 156 LDEIKPVIATGDFNVAHKEIDLANPDGNRMSAGFTDEERQGFTNLLDRGFTDTFRHIHGD 215
Query: 62 ----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+R K+S F++ + + D +D+ + H P+ ++
Sbjct: 216 VEGVFTWWAQRVKTSKIN-NSGWRIDYFIVSDRIKDLVKDSKMIDSGERQ--DHTPILLD 272
Query: 118 YDF 120
+
Sbjct: 273 INL 275
>gi|309806468|ref|ZP_07700473.1| exodeoxyribonuclease III [Lactobacillus iners LactinV 03V1-b]
gi|308167141|gb|EFO69315.1| exodeoxyribonuclease III [Lactobacillus iners LactinV 03V1-b]
Length = 275
Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIRFPQE 58
K+ P + +GD+N I F + + +
Sbjct: 154 AKLDQNKPVIASGDYNVAHQEIDLKHPETNHHNAGFTDEERKGFSKLLSLGFIDTFRYIN 213
Query: 59 ---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ +R ++S +L+ + +DT K HCP+
Sbjct: 214 GDITDVYSWWSQRIRTSKTN-NAGWRIDYYLVSQRLADKIEQSKMIDTGDRK--DHCPIL 270
Query: 116 IEYDF 120
++ D
Sbjct: 271 LKIDL 275
>gi|301096360|ref|XP_002897277.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
gi|262107161|gb|EEY65213.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
Length = 362
Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 7/98 (7%), Positives = 17/98 (17%), Gaps = 20/98 (20%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
++++ P + GD N I +
Sbjct: 262 KEMEKTKPVIWCGDLNVAHQEIDIHNPKGNHKSAGFTDEERESFGEILEDGFVDTFRHLH 321
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV 94
+ R+ F++
Sbjct: 322 PDTVEYSYFGYRHNMRAKNKGW--RLDYFVVSEKLLPH 357
>gi|218439253|ref|YP_002377582.1| endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 7424]
gi|218171981|gb|ACK70714.1| Endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 7424]
Length = 262
Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 30/121 (24%), Gaps = 13/121 (10%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINS---IGDTDDF-WQKMDPDGLLIRFPQEKES 61
+ + + Q T + DFN + + D L ++++S
Sbjct: 151 AKLIYERLSQLDVTDTYLFVTADFNATPETVTRKTFETPLPEGRQLDDALAQLPLEDQKS 210
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ D+ + + S H P+ E+ E
Sbjct: 211 F---------NHFTEEATDAIDTIYYDSRVKLQNAFVDRQKWEGVIPSDHFPVIGEFLLE 261
Query: 122 K 122
Sbjct: 262 S 262
>gi|323976824|gb|EGB71912.1| endonuclease/Exonuclease/phosphatase [Escherichia coli TW10509]
Length = 253
Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPILVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|167031164|ref|YP_001666395.1| endonuclease/exonuclease/phosphatase [Pseudomonas putida GB-1]
gi|166857652|gb|ABY96059.1| Endonuclease/exonuclease/phosphatase [Pseudomonas putida GB-1]
Length = 284
Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 22/112 (19%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ + I V+ GD N + + L + PQ + + + +
Sbjct: 185 YIRELIGGYRHQVLMGDMNTHATDLLEHSPL------RDLGLVAPQVEATFPSWRPQR-- 236
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+ S ++ + +S H P+ +E
Sbjct: 237 ---------CLDHILLSPSLTLERVEVLAQP-----ISDHLPVAVEIRLPDA 274
>gi|53717884|ref|YP_106870.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei K96243]
gi|67641509|ref|ZP_00440286.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei GB8 horse 4]
gi|76810950|ref|YP_331843.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1710b]
gi|121598216|ref|YP_994254.1| hypothetical protein BMASAVP1_A2960 [Burkholderia mallei SAVP1]
gi|124384970|ref|YP_001028092.1| hypothetical protein BMA10229_A2128 [Burkholderia mallei NCTC
10229]
gi|126442096|ref|YP_001057288.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 668]
gi|126450081|ref|YP_001082902.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei NCTC 10247]
gi|126454198|ref|YP_001064530.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1106a]
gi|134283629|ref|ZP_01770328.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 305]
gi|167001495|ref|ZP_02267290.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei PRL-20]
gi|167736660|ref|ZP_02409434.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 14]
gi|167813758|ref|ZP_02445438.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 91]
gi|167843867|ref|ZP_02469375.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei B7210]
gi|167892369|ref|ZP_02479771.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 7894]
gi|167900865|ref|ZP_02488070.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei NCTC 13177]
gi|217424902|ref|ZP_03456398.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 576]
gi|226199751|ref|ZP_03795302.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei Pakistan 9]
gi|237810425|ref|YP_002894876.1| endonuclease/exonuclease/phosphatase [Burkholderia pseudomallei
MSHR346]
gi|242317588|ref|ZP_04816604.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1106b]
gi|254174690|ref|ZP_04881351.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei ATCC 10399]
gi|254182171|ref|ZP_04888768.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1655]
gi|254188101|ref|ZP_04894613.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei Pasteur 52237]
gi|254196318|ref|ZP_04902742.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei S13]
gi|254201867|ref|ZP_04908231.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei FMH]
gi|254207198|ref|ZP_04913549.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei JHU]
gi|254260281|ref|ZP_04951335.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1710a]
gi|254295783|ref|ZP_04963240.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 406e]
gi|254359702|ref|ZP_04975973.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei 2002721280]
gi|52208298|emb|CAH34231.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei K96243]
gi|76580403|gb|ABA49878.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1710b]
gi|121227026|gb|ABM49544.1| conserved hypothetical protein [Burkholderia mallei SAVP1]
gi|124292990|gb|ABN02259.1| conserved hypothetical protein [Burkholderia mallei NCTC 10229]
gi|126221589|gb|ABN85095.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 668]
gi|126227840|gb|ABN91380.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1106a]
gi|126242951|gb|ABO06044.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei NCTC 10247]
gi|134245038|gb|EBA45133.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 305]
gi|147747761|gb|EDK54837.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei FMH]
gi|147752740|gb|EDK59806.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei JHU]
gi|148028916|gb|EDK86848.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei 2002721280]
gi|157806316|gb|EDO83486.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 406e]
gi|157935781|gb|EDO91451.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei Pasteur 52237]
gi|160695735|gb|EDP85705.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei ATCC 10399]
gi|169653061|gb|EDS85754.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei S13]
gi|184212709|gb|EDU09752.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1655]
gi|217391922|gb|EEC31948.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 576]
gi|225928102|gb|EEH24138.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei Pakistan 9]
gi|237506100|gb|ACQ98418.1| endonuclease/exonuclease/phosphatase [Burkholderia pseudomallei
MSHR346]
gi|238522453|gb|EEP85897.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei GB8 horse 4]
gi|242140827|gb|EES27229.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1106b]
gi|243062702|gb|EES44888.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei PRL-20]
gi|254218970|gb|EET08354.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1710a]
Length = 270
Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 18/120 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ +TG P V+AGDFN N + ++ + + +
Sbjct: 169 RQMHWIAHWIERNARTG-PLVLAGDFNDWRNDS---IPLFGEIGLSEVATLLGESGRTFP 224
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + + + LS H P +
Sbjct: 225 AFSPALALDKMFVRGMTPLEWRAPGDE--------------TAWLSDHLPYVARLRLDPA 270
>gi|330972149|gb|EGH72215.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 291
Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 22/113 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N N + + L + PQ + + + +
Sbjct: 186 AYIRELIGGYRHQVLMGDMNTHANDLLEHSPL------RDLGLLAPQIEATFPSWRPQR- 238
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+ + ++ +S H P+ +E
Sbjct: 239 ----------CLDHILLSPTLTLERVQVLAQP-----ISDHLPVAVEIRLPDS 276
>gi|302408026|ref|XP_003001848.1| endonuclease/exonuclease/phosphatase family protein [Verticillium
albo-atrum VaMs.102]
gi|261359569|gb|EEY21997.1| endonuclease/exonuclease/phosphatase family protein [Verticillium
albo-atrum VaMs.102]
Length = 556
Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 31/117 (26%), Gaps = 7/117 (5%)
Query: 5 QGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + D V++GDFN + L E
Sbjct: 441 QTGSIGAFIDTLYAKDPKARIVVSGDFNEFAFVAPMKLLTEKHKL-TSLSKHSLPATERY 499
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
V N LD+ +I +++ + S +S H P +
Sbjct: 500 SYVFDGNAQQLDHMLISPSL----VNDKAKLEHIHVSSWRRFADVVSDHDPAVGRLN 552
>gi|255008060|ref|ZP_05280186.1| putative endonuclease/exonuclease/phosphatase family protein
[Bacteroides fragilis 3_1_12]
gi|313145777|ref|ZP_07807970.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313134544|gb|EFR51904.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 285
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 25/107 (23%), Gaps = 4/107 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I P ++ GDFN + ++
Sbjct: 182 KEIAGTHPSMMTGDFNVSEEWEAYKTITSNEFILKDAWKIAAKQTGE-SYTFHDFGRVP- 239
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYDF 120
+ + + S T + LS H + +F
Sbjct: 240 -VAEREKIDFIFVTPQIKVADAEIISSAITDSTYLSDHNAHLADLEF 285
>gi|320654071|gb|EFX22139.1| hypothetical protein ECO7815_07649 [Escherichia coli O55:H7 str.
3256-97 TW 07815]
Length = 253
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|331662145|ref|ZP_08363068.1| putative cytoplasmic protein [Escherichia coli TA143]
gi|331060567|gb|EGI32531.1| putative cytoplasmic protein [Escherichia coli TA143]
Length = 253
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|209519157|ref|ZP_03267961.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. H160]
gi|209500383|gb|EEA00435.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. H160]
Length = 265
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ G P V+AGDFN N +++ + +
Sbjct: 166 RQMNWIAHWIAKEAPDG-PLVLAGDFNDWRNDSV---PLFREHGLQEVATLLGE------ 215
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + V + Q +T LS H P + +
Sbjct: 216 ------PARTFPAFSPALSLDKMFVRGMQPVQWIQPTQETAW--LSDHLPYVAKLRLD 265
>gi|160891549|ref|ZP_02072552.1| hypothetical protein BACUNI_04001 [Bacteroides uniformis ATCC 8492]
gi|156858956|gb|EDO52387.1| hypothetical protein BACUNI_04001 [Bacteroides uniformis ATCC 8492]
Length = 366
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 12/111 (10%), Positives = 21/111 (18%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ GDFN S +
Sbjct: 268 QADTIAHEIAA--SPHPYIIVCGDFNDTPISYAHRTIAQDL-------DDAFTQSGRGLG 318
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N L + + K S H P+
Sbjct: 319 ISYNQNRFYF------RIDNILTSKNLRAYNCTVDRSI----KESDHYPIW 359
>gi|21231641|ref|NP_637558.1| hypothetical protein XCC2202 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66768237|ref|YP_242999.1| hypothetical protein XC_1916 [Xanthomonas campestris pv. campestris
str. 8004]
gi|21113335|gb|AAM41482.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573569|gb|AAY48979.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 253
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 10/119 (8%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + P VIAGDFN +++ + + + + +
Sbjct: 135 RQVADLLDFIASN-SNQAPVVIAGDFNTAADTLDL-EALRKGYGDSYGSVHRNSDATVST 192
Query: 64 NVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + +D+ ++ Y S H + + F
Sbjct: 193 LNLHVFDKPARIDHVFFQQNRLLAREARILFDTPY------AEGRWASDHYGVWVRLQF 245
>gi|309798809|ref|ZP_07693073.1| exodeoxyribonuclease III [Streptococcus infantis SK1302]
gi|308117626|gb|EFO55038.1| exodeoxyribonuclease III [Streptococcus infantis SK1302]
Length = 217
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 35/130 (26%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
++ Q + + GD+N I + + + G
Sbjct: 92 AEYLAQ-LDKQKSVLATGDYNVAHKEIDLANPASNRRSPGFTDEEREGFSNLLAKGFTDT 150
Query: 55 FPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +R+K+S +L N + +D+ +
Sbjct: 151 FRHIHGDVPERYTWWAQRSKTSKIN-NTGWRIDYWLTSNRVADKVTKSDMIDSGARQ--D 207
Query: 111 HCPLTIEYDF 120
H P+ +E +
Sbjct: 208 HTPIVMEIEL 217
>gi|300087680|ref|YP_003758202.1| endonuclease/exonuclease/phosphatase [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527413|gb|ADJ25881.1| Endonuclease/exonuclease/phosphatase [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 654
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 25/115 (21%), Gaps = 21/115 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + VI GDFN + N + + +
Sbjct: 560 QVSALLDF----YNRSSRTVIMGDFNAEPNDQEIKLMRAAGLRDIM---LSLEPPPAYTF 612
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+DY + D + S H + + +
Sbjct: 613 RSDDLFQRIDYIWVSPDLVWSEVRLI--------------TGTASDHRGVVADIE 653
>gi|259089125|ref|NP_001158599.1| Deoxyribonuclease gamma [Oncorhynchus mykiss]
gi|225705192|gb|ACO08442.1| Deoxyribonuclease gamma precursor [Oncorhynchus mykiss]
Length = 306
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 2/100 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GDFN + + ++ D + T + + +
Sbjct: 163 DNIMILGDFNADGSYVTKKGMTNIRIRSDKKFHWVIGDDVDTTANTSNDHTYDRIVMYGD 222
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
D ++ NS +Y ++ + L S H P+ +E
Sbjct: 223 DMLEAMVPNSAKPFNYHKAFHLSEAMALSISDHYPVEVEL 262
>gi|330976189|gb|EGH76251.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 233
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 32/118 (27%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + L + +I G P ++AGDFN + + K
Sbjct: 132 RQQLKLLNELM-ARIPEGEPVIVAGDFNDWRRRADA-SLQGSGLHEVFVERFGAPAKSFP 189
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N+ S S S LS H PL +E
Sbjct: 190 ARW------------PLLCLDRIYVRNATSHRPKVLSSRPW--SHLSDHAPLAVELTL 233
>gi|168752009|ref|ZP_02777031.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4113]
gi|168756575|ref|ZP_02781582.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4401]
gi|168767291|ref|ZP_02792298.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4486]
gi|168777230|ref|ZP_02802237.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4196]
gi|168779334|ref|ZP_02804341.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4076]
gi|195936830|ref|ZP_03082212.1| DNase [Escherichia coli O157:H7 str. EC4024]
gi|208815890|ref|ZP_03257069.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4045]
gi|208822066|ref|ZP_03262385.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4042]
gi|209396778|ref|YP_002269459.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4115]
gi|254791984|ref|YP_003076821.1| putative DNase [Escherichia coli O157:H7 str. TW14359]
gi|187767486|gb|EDU31330.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4196]
gi|188014050|gb|EDU52172.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4113]
gi|189003112|gb|EDU72098.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4076]
gi|189356304|gb|EDU74723.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4401]
gi|189363397|gb|EDU81816.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4486]
gi|208732538|gb|EDZ81226.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4045]
gi|208737551|gb|EDZ85234.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4042]
gi|209158178|gb|ACI35611.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4115]
gi|209775986|gb|ACI86305.1| hypothetical protein ECs0868 [Escherichia coli]
gi|254591384|gb|ACT70745.1| predicted DNase [Escherichia coli O157:H7 str. TW14359]
Length = 253
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNT--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|71902993|ref|YP_279796.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS6180]
gi|71802088|gb|AAX71441.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS6180]
Length = 303
Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 38/143 (26%), Gaps = 33/143 (23%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQK 45
+Q W K+AD ++ P + GD+N I + +
Sbjct: 169 DRQI-WDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPSSNRRSPGFTDEERQGFTN 227
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N +
Sbjct: 228 LLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKIN-NTGWRIDYWLASNRI------VDKV 280
Query: 102 DTRRSKLS----THCPLTIEYDF 120
S H P+ ++ D
Sbjct: 281 KRSEMISSGERQDHTPILLDIDL 303
>gi|302188968|ref|ZP_07265641.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
syringae 642]
Length = 291
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 22/113 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N N + + L + PQ + + + +
Sbjct: 186 AYIRELIGGYRHQVLMGDMNTHANDLLEHSPL------RDLGLLAPQIEATFPSWRPQR- 238
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+ + ++ +S H P+ +E
Sbjct: 239 ----------CLDHILLSPTLTLERVQVLAQP-----ISDHLPVAVEIRLPDS 276
>gi|194228453|ref|XP_001915550.1| PREDICTED: similar to DNase X (predicted) [Equus caballus]
Length = 305
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 28/104 (26%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ ++ GDFN S+ + + E T + +
Sbjct: 170 QRWQSKDVILLGDFNADCASLNKKHLGELVLRTQAGFHWAIADGEDTTVRASTHCTYDRI 229
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++ L + + +S H P+ +E
Sbjct: 230 VLHGERCQSLLHAAATFDFPRRFQLTEEEALNISDHYPVEVELS 273
>gi|82776137|ref|YP_402484.1| hypothetical protein SDY_0813 [Shigella dysenteriae Sd197]
gi|309786554|ref|ZP_07681177.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
dysenteriae 1617]
gi|81240285|gb|ABB60995.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|308925617|gb|EFP71101.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
dysenteriae 1617]
Length = 253
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|302688375|ref|XP_003033867.1| hypothetical protein SCHCODRAFT_52565 [Schizophyllum commune H4-8]
gi|300107562|gb|EFI98964.1| hypothetical protein SCHCODRAFT_52565 [Schizophyllum commune H4-8]
Length = 625
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 11/117 (9%)
Query: 5 QGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL------IRFP 56
Q E + + + ++AGDFN +
Sbjct: 504 QVELVASFVGDILAVDPEANVIVAGDFNEYTQTRSVLQALEDIGSGGDDGLIEIDEAAGL 563
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
E E V +N LD+ + ++ V + + T ++S H P
Sbjct: 564 AEVERYTYVYDQNTQQLDHAFVSGAIAGRGVEVEHVHV---NNWVATYAERVSDHDP 617
>gi|294508721|ref|YP_003572780.1| Endonuclease/exonuclease/phosphatase family protein [Salinibacter
ruber M8]
gi|294345050|emb|CBH25828.1| Endonuclease/exonuclease/phosphatase family protein [Salinibacter
ruber M8]
Length = 358
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 12/124 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------TDDFWQKMDPDGLLIRFPQE 58
Q + + GIP ++ GDFN ++S + D Q + L
Sbjct: 222 QARVVNDLYRRLADRGIPTLLLGDFNSSLSSGEEGGQAGAEDATMQHILAGTDLRSAVNT 281
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ ++ R + L F + D R + S HC +T
Sbjct: 282 ALADT-----ASATYPADAPARTIDHILYSPQFFE-AVDTKRWCGRPAPPSDHCAVTAAL 335
Query: 119 DFEK 122
Sbjct: 336 RLTS 339
>gi|260912305|ref|ZP_05918856.1| endonuclease/exonuclease/phosphatase family protein [Prevotella sp.
oral taxon 472 str. F0295]
gi|260633606|gb|EEX51745.1| endonuclease/exonuclease/phosphatase family protein [Prevotella sp.
oral taxon 472 str. F0295]
Length = 321
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 32/136 (23%), Gaps = 17/136 (12%)
Query: 6 GEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L D + V+ GDFN ++ +
Sbjct: 185 ARRLCAAIDSIRQGNMAANIVVTGDFNDYGDTPALRLLSDNDLTDV-SANAIGNNGAKGT 243
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------------LS 109
+ SLD+ + R + + D + K S
Sbjct: 244 YRYQGEWGSLDHIYVSRLLHEKGVSCRIFDAPFLLEDEEKYGGKRPWRTYQGPKYLGGFS 303
Query: 110 THCPLTIEYDFEKGNV 125
H PL + + + V
Sbjct: 304 DHLPLVVTFGMPETTV 319
>gi|163801984|ref|ZP_02195880.1| putative phospholipase C precursor [Vibrio sp. AND4]
gi|159174125|gb|EDP58933.1| putative phospholipase C precursor [Vibrio sp. AND4]
Length = 442
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 37/127 (29%), Gaps = 11/127 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I + V +GDFN + D + E
Sbjct: 314 QRQFKQMRAMAQSLNIPSNETVVYSGDFNVNKLKFPDDYQQMIANLSAIEPEYSGYTEST 373
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ + ++ N + I S + + +D + LS H
Sbjct: 374 FDPRINNFAGRTFSGDGSVEYLDYVMVSNEYGIKSQNDNYVDVPRSTAASIWQHYNLSDH 433
Query: 112 CPLTIEY 118
P++
Sbjct: 434 FPVSTVL 440
>gi|328765816|gb|EGF75929.1| hypothetical protein BATDEDRAFT_28958 [Batrachochytrium
dendrobatidis JAM81]
Length = 579
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 7/104 (6%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
V GDFN + + M +I ++ + + + N LD+
Sbjct: 21 QNPEANIVSVGDFNDYQFTDALEIHEGEHM---TNMINKVEDGDRYTYLFQGNSQVLDHI 77
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++ + + I +D + S H P+ ++ D
Sbjct: 78 LVSNNLAEATEIDILHI----NADFTDMAGRASDHDPVMVKLDL 117
>gi|28896473|ref|NP_802823.1| 3'-exo-deoxyribonuclease [Streptococcus pyogenes SSI-1]
gi|28811724|dbj|BAC64656.1| putative 3'-exo-deoxyribonuclease [Streptococcus pyogenes SSI-1]
Length = 313
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 38/143 (26%), Gaps = 33/143 (23%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQK 45
+Q W K+AD ++ P + GD+N I + +
Sbjct: 179 DRQI-WDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPSSNRRSPGFTDEERQGFTN 237
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N +
Sbjct: 238 LLARGFTDTFRHVHGDIPHVYTWWAQRSKTSKIN-NTGWRIDYWLASNRI------VDKV 290
Query: 102 DTRRSKLS----THCPLTIEYDF 120
S H P+ ++ D
Sbjct: 291 KRSEMISSGERQDHTPILLDIDL 313
>gi|256419904|ref|YP_003120557.1| endonuclease/exonuclease/phosphatase [Chitinophaga pinensis DSM
2588]
gi|256034812|gb|ACU58356.1| Endonuclease/exonuclease/phosphatase [Chitinophaga pinensis DSM
2588]
Length = 371
Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 27/114 (23%), Gaps = 21/114 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
S+Q + + + P ++ GDFN S
Sbjct: 273 SKQADIVSAFIST---CPYPVILCGDFNDTPASYTYFTI---------RGDLQDAFLRKG 320
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + F+ S+ + S LS H P+
Sbjct: 321 SGIGRTYAGLAP----TLRIDYI-----FTDKSFKVNSFRKINSTLSDHYPVIA 365
>gi|328848136|gb|EGF97385.1| hypothetical protein MELLADRAFT_70027 [Melampsora larici-populina
98AG31]
Length = 301
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 31/121 (25%), Gaps = 5/121 (4%)
Query: 3 SQQGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q L ++ + + KT P + GD N + + K
Sbjct: 175 REQSAKLIRYRAEALIKKTSKPVFLLGDLNSTPEELPYKTLTTESTGQLSFKDSRQNAKH 234
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFL-IDNSFSIVSYDQ--SDLDTRRSKLSTHCPLTIE 117
+ S + + + + Y + + S H + +
Sbjct: 235 LYGAINATYTSFSKNPSVQGVIDVVMLMGYHWEAKKYGVIPNSFEDDEYYASDHRLVCAQ 294
Query: 118 Y 118
Y
Sbjct: 295 Y 295
>gi|159039045|ref|YP_001538298.1| endonuclease/exonuclease/phosphatase [Salinispora arenicola
CNS-205]
gi|157917880|gb|ABV99307.1| Endonuclease/exonuclease/phosphatase [Salinispora arenicola
CNS-205]
Length = 236
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 30/119 (25%), Gaps = 15/119 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + +++A + P ++ D N + +
Sbjct: 130 ERPAQA-ERFARELTGAPAPVIVGADLNEE-ADGPAWAVVAAGRTDAAVAADRADRPTFP 187
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ R +D ++V YD D R S H P+ +
Sbjct: 188 RGPLHR------------RIDALFVDPRITVVHYDVVDTPQTRL-ASDHLPILADLLLP 233
>gi|42523979|ref|NP_969359.1| hypothetical protein Bd2555 [Bdellovibrio bacteriovorus HD100]
gi|39576187|emb|CAE80352.1| hypothetical protein Bd2555 [Bdellovibrio bacteriovorus HD100]
Length = 343
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 43/140 (30%), Gaps = 24/140 (17%)
Query: 3 SQQGEWLKKWAD-----QKIKTGIPFVIAGDFNRKI----NSIGDTDDFWQKMDPDGLLI 53
+Q E L+ + +K +P ++AGDFN D + D L +
Sbjct: 200 RRQAE-LRTLIEIYQELEKTHPQVPVMVAGDFNGNAGLTGTDEEFKDIYNLTSLRDVLEV 258
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL------------ 101
+ +E RN S D ID L+ S
Sbjct: 259 AQLEIEERATFYQVRNSSRADGRQIDFVFIPPLLHPYLKPASAHVHRYKDEFGMAHDIPR 318
Query: 102 --DTRRSKLSTHCPLTIEYD 119
D + S S H PL E +
Sbjct: 319 NMDAKLSLPSDHYPLVFEIE 338
>gi|300253219|gb|ADJ96599.1| APEX-like DNA repair enzyme [Camelus dromedarius]
Length = 283
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 10/95 (10%), Positives = 19/95 (20%), Gaps = 21/95 (22%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMD 47
E +K+ + + P V+ GD N I + Q +
Sbjct: 190 EAFRKFLKG-LASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVP 248
Query: 48 PDGLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRD 81
+ + D
Sbjct: 249 LADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLD 283
>gi|206560253|ref|YP_002231017.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
cenocepacia J2315]
gi|198036294|emb|CAR52190.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
cenocepacia J2315]
Length = 284
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 11/95 (11%), Positives = 24/95 (25%), Gaps = 1/95 (1%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN S F + I + D
Sbjct: 190 IVCGDFNSAFGSDAYRR-FLAPLADAPDFIDAWVARHPGRTPPPTAGVYDTVQWSDGPLA 248
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + +++ + S H P+ ++
Sbjct: 249 CDFVFVTDTLLPRVTRCEIDGNVRASDHQPVLLDL 283
>gi|311696215|gb|ADP99088.1| endonuclease/exonuclease/phosphatase [marine bacterium HP15]
Length = 286
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 23/121 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+QQ + + + I V+ GD N + + P +
Sbjct: 184 AQQRQL--GYIRELIADYRHVVLMGDMNAHAEQLLTQTPLRE-------TDLVPLPDTAH 234
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
R ++ + L+ S I + +S H P+ ++ +
Sbjct: 235 SFPSWR---------PEKALDHILVSPSLEIRRSEVVSYP-----MSDHLPIAMDVALPE 280
Query: 123 G 123
G
Sbjct: 281 G 281
>gi|121608305|ref|YP_996112.1| endonuclease/exonuclease/phosphatase [Verminephrobacter eiseniae
EF01-2]
gi|121552945|gb|ABM57094.1| Endonuclease/exonuclease/phosphatase [Verminephrobacter eiseniae
EF01-2]
Length = 245
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 19/116 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E L+ + ++++ + P V+AGDFN ++M L+ F +
Sbjct: 148 RQIERLQGFIEREVPSAAPLVVAGDFND-------WGVQVKRMLAGFALLEFDAPRAF-- 198
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ L +D L S + ++S H PL E+
Sbjct: 199 ----TYPARLPLVQLDHVYARGLAPLSLHVPRGRI------WWRMSDHLPLIAEFR 244
>gi|66043537|ref|YP_233378.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
syringae B728a]
gi|63254244|gb|AAY35340.1| Endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
syringae B728a]
Length = 291
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 22/113 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N N + + L + PQ + + + +
Sbjct: 186 AYIRELIGGYRHQVLMGDMNTHANDLLEHSPL------RDLGLLAPQIEATFPSWRPQR- 238
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+ + ++ +S H P+ +E
Sbjct: 239 ----------CLDHILLSPTLTLERVQVLAQP-----ISDHLPVAVEIRLPDS 276
>gi|300114617|ref|YP_003761192.1| endonuclease/exonuclease/phosphatase [Nitrosococcus watsonii C-113]
gi|299540554|gb|ADJ28871.1| Endonuclease/exonuclease/phosphatase [Nitrosococcus watsonii C-113]
Length = 248
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 28/117 (23%), Gaps = 12/117 (10%)
Query: 6 GEWLK--KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ L K + P + GD N + + GL F
Sbjct: 141 AQALNTVKMLRRLATQSSPLLFMGDLND-------HYLPLKVLQEGGLTDCFTALGRIPQ 193
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ Y + L ++ D D S H PL Y +
Sbjct: 194 ITR---PAYPTYVHTPQVVDWVLHWGPLQPMTSDVVDFFVGDVAPSDHKPLLATYRW 247
>gi|297570782|ref|YP_003696556.1| LPXTG-motif cell wall anchor domain protein [Arcanobacterium
haemolyticum DSM 20595]
gi|296931129|gb|ADH91937.1| LPXTG-motif cell wall anchor domain protein [Arcanobacterium
haemolyticum DSM 20595]
Length = 1016
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 35/132 (26%), Gaps = 21/132 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + +W +K P I GD N + + I ++
Sbjct: 715 QVTEMAQWVAKKFA-DEPVFILGDLNSYTFEDPL---MTLEKEFGYTSIAQKTGIKNHSY 770
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS-------------YDQSD----LDTRRSK 107
SLD+ + + + V+ Y+ + +
Sbjct: 771 QYGGLVGSLDHALGNPAAMAMVKAADVWNVNAMEPLAFEYSRYNYNINYKNLFDAASPFR 830
Query: 108 LSTHCPLTIEYD 119
S H P+ + +
Sbjct: 831 SSDHDPIKVAIE 842
>gi|195977651|ref|YP_002122895.1| exodeoxyribonuclease ExoA [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|195974356|gb|ACG61882.1| exodeoxyribonuclease ExoA [Streptococcus equi subsp. zooepidemicus
MGCS10565]
Length = 275
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 31/134 (23%), Gaps = 31/134 (23%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ Q + P + GD+N I + P
Sbjct: 150 ADYLAQ-LDAQKPVLATGDYNVAHKEIDLANPASNHRSPGFTDEERLGFTNLLNRGFTDT 208
Query: 52 LIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS- 109
+ + +R+K+S +L N + S
Sbjct: 209 FRFIHGDIPNVYSWWAQRSKTSKLN-NTGWRIDYWLTSNRL------IDKVSRSEMISSG 261
Query: 110 ---THCPLTIEYDF 120
H P+ +E D
Sbjct: 262 ERQDHTPILLEIDL 275
>gi|301104252|ref|XP_002901211.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262101145|gb|EEY59197.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 374
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 38/128 (29%), Gaps = 13/128 (10%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKIN---SIGDTDDFWQKM------DPDGLLIRF 55
Q L A+ + G +I GD N + + + +
Sbjct: 245 QATVLAGLANAAVDEGHHAIITGDLNDWSATVLDKNSNTPISAVLSILTGSNFVDVASKI 304
Query: 56 PQEKESTCNVIKRNKSSLDYFVI---DRDNKNFLIDNSFSIVSYDQS-DLDTRRSKLSTH 111
Q T + N + + D + + ++ VS++ + S H
Sbjct: 305 SQSDRYTQWWDEDNNCVFEDSEVSSLDHMLVSKSLSSALKSVSFNHDLYASSCSGYNSDH 364
Query: 112 CPLTIEYD 119
P+++ +
Sbjct: 365 YPISVVLN 372
>gi|194376980|dbj|BAG63051.1| unnamed protein product [Homo sapiens]
Length = 347
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 29/138 (21%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLL 52
L+ + + G +I GD N I D + G
Sbjct: 5 RLLQIRTEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQ 64
Query: 53 IRFPQEKESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + L D + I ++ Q+
Sbjct: 65 SASHVGPFIDSYRCFQPKQEGAFTCWSAVTGARHLNYGSRLDYVLGDRTLVIDTF-QASF 123
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+
Sbjct: 124 LLPEVMGSDHCPVGAVLS 141
>gi|149175215|ref|ZP_01853837.1| probable secreted protein [Planctomyces maris DSM 8797]
gi|148845824|gb|EDL60165.1| probable secreted protein [Planctomyces maris DSM 8797]
Length = 280
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 20/119 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
++ + + + + IP ++AGD N + Q + + S
Sbjct: 181 EEAKAINGHF--TLDSDIPTILAGDMNATPEAEPI-----QILQKQWTNAIDDKATPSAP 233
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
R S +DY S S H P+ +++
Sbjct: 234 ATKPR--SRIDYIFYRPAADFE-----------VIETKVIDESLASDHRPIFAILKWKQ 279
>gi|118586338|ref|ZP_01543790.1| exodeoxyribonuclease A [Oenococcus oeni ATCC BAA-1163]
gi|290891237|ref|ZP_06554299.1| hypothetical protein AWRIB429_1689 [Oenococcus oeni AWRIB429]
gi|118433229|gb|EAV39943.1| exodeoxyribonuclease A [Oenococcus oeni ATCC BAA-1163]
gi|290479201|gb|EFD87863.1| hypothetical protein AWRIB429_1689 [Oenococcus oeni AWRIB429]
Length = 273
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 37/132 (28%), Gaps = 22/132 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPD-- 49
+ + + + I + +GD N I + + + ++
Sbjct: 146 DQFRHYISDLSERKI-VIFSGDLNVAHEEIDLKNSSSNHNSAGFTDQEREKFSRLLSAGF 204
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ + +RN+ + +++ NS +DT
Sbjct: 205 IDTWRLQHPKEIAYSWWSQRNRLAKTN-NAGWRIDYYIVSNSAKEKIVKTGMIDTGTRA- 262
Query: 109 STHCPLTIEYDF 120
H P+ ++
Sbjct: 263 -DHAPIYLQMKL 273
>gi|45198534|ref|NP_985563.1| AFR016Wp [Ashbya gossypii ATCC 10895]
gi|44984485|gb|AAS53387.1| AFR016Wp [Ashbya gossypii ATCC 10895]
Length = 558
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 35/127 (27%), Gaps = 13/127 (10%)
Query: 1 MLSQ--QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-MDPDGLLIRFPQ 57
+L + Q E +++ + ++ G N + D + + + +
Sbjct: 274 VLERIYQEEA-REFIYEPLRIGRRL-----LNEMLIDSIIPDLAEKGVLIDSTRYAQGRK 327
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ S + D + D + S HCP+ +
Sbjct: 328 RLKMYTVWDTYRNSRPANYGSRVDYILVSKALKEGVKKADI----WAKVMGSDHCPVFTD 383
Query: 118 YDFEKGN 124
E+ +
Sbjct: 384 LQIEEED 390
>gi|330873531|gb|EGH07680.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. morsprunorum str. M302280PT]
Length = 380
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 32/132 (24%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP------ 56
+Q + D+ G P++I GDFN Q++
Sbjct: 248 QKQIAATETLLDKLEGGGTPWLIGGDFNLLPLGQYQRLPEQQRISYAADSELHTLWEKYP 307
Query: 57 -------QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + DR S VS DT +S
Sbjct: 308 MIPNNTESSGTDRSQWLTHFPNDSRVNGPDRTVDYLFYSPSLKRVSARVRRDDTLL--IS 365
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 366 DHLPVIGRFLLP 377
>gi|307565860|ref|ZP_07628321.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
amnii CRIS 21A-A]
gi|307345484|gb|EFN90860.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
amnii CRIS 21A-A]
Length = 315
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 17/131 (12%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ L D +KI +I GDFN +S +
Sbjct: 186 ADVLCHSIDSIRKINNNSKILIMGDFNDYASSPALRRICKHNIID-ISEKAQGTHGAMGT 244
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKL-------------S 109
+ SLD+F+I + + + S + + + D+ K S
Sbjct: 245 YRFQGEWGSLDHFLISLNLLSNIKSCSINDAPFLLEEDMKYGGVKPRRNYNGLRYNSGFS 304
Query: 110 THCPLTIEYDF 120
H PL + F
Sbjct: 305 DHLPLVLRLTF 315
>gi|322433843|ref|YP_004216055.1| Endonuclease/exonuclease/phosphatase [Acidobacterium sp. MP5ACTX9]
gi|321161570|gb|ADW67275.1| Endonuclease/exonuclease/phosphatase [Acidobacterium sp. MP5ACTX9]
Length = 1139
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 24/133 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD-----------DFWQKMDPD---- 49
Q E + K+ + G + GDFN S G D Q + P
Sbjct: 710 QAEDIAKFIQTQQAAGKHVISGGDFNAFEFSDGYNDTLGTYTNTNVLPATQVLQPGVAGL 769
Query: 50 -----GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS----D 100
L + V + LD+ V+ + ++ ++ D +
Sbjct: 770 VTPPLTDLALTIPAAQRWSYVEDGSAQILDHMVVTPELVAAGAHFAYGHLNADFPLTAYN 829
Query: 101 LDTRRSKLSTHCP 113
T ++ S H P
Sbjct: 830 DATTAARNSDHDP 842
>gi|50913711|ref|YP_059683.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS10394]
gi|50902785|gb|AAT86500.1| Exodeoxyribonuclease III [Streptococcus pyogenes MGAS10394]
Length = 303
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 39/143 (27%), Gaps = 33/143 (23%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQK 45
+Q W K+AD ++ P + GD+N I + +
Sbjct: 169 DRQI-WDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPSSNRRSPGFTDEERQGFTN 227
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N +
Sbjct: 228 LLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKIN-NTGWRIDYWLASNRL------VDKV 280
Query: 102 DTRRSKLS----THCPLTIEYDF 120
S H P+ ++ DF
Sbjct: 281 KRSEMISSGERQDHTPILLDIDF 303
>gi|325913687|ref|ZP_08176049.1| exodeoxyribonuclease III [Lactobacillus iners UPII 60-B]
gi|325477046|gb|EGC80196.1| exodeoxyribonuclease III [Lactobacillus iners UPII 60-B]
Length = 275
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 22/124 (17%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIRFPQE- 58
K+ P + +GD+N I F + + +
Sbjct: 155 KLDQNKPVIASGDYNVAHQEIDLKHPETNHHNAGFTDEERKGFSKLLSLGFIDTFRYING 214
Query: 59 --KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ +R ++S +L+ + +DT K HCP+ +
Sbjct: 215 DITDVYSWWSQRIRTSKTN-NSGWRIDYYLVSQRLADKIEQSKMIDTGDRK--DHCPILL 271
Query: 117 EYDF 120
+ D
Sbjct: 272 KIDL 275
>gi|295094002|emb|CBK83093.1| Metal-dependent hydrolase [Coprococcus sp. ART55/1]
Length = 367
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 15/129 (11%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD--TDDFWQKMDPDGLLIRFPQEKEST 62
Q L + G + GDFN+ +++ + G +
Sbjct: 242 QTRMLADILQNEAAAGNYVIAGGDFNQTFSNVDLSAYPQQSADLWAPGSIDVSEFGDSFI 301
Query: 63 CNVIKR----------NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
C+ + S F++ ++ I S + +LD + S H
Sbjct: 302 CSTDSSAPTCRSLDKPYEGSDHESFQYYVIDGFIVSSNLQINSTETINLDFKN---SDHN 358
Query: 113 PLTIEYDFE 121
P+ ++ +
Sbjct: 359 PIRLDVALK 367
>gi|194695010|gb|ACF81589.1| unknown [Zea mays]
Length = 161
Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 28/138 (20%), Gaps = 38/138 (27%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFW---------------------------QKMDP---- 48
P + GD N I + + ++
Sbjct: 9 DKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRRFGNILFQ 68
Query: 49 ---DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS----DL 101
+EK+ Y FL+ +
Sbjct: 69 GKLVDAYRHLHKEKDIDGGFSWSGHPIGKYRGKRMRIDYFLVSEQLKDRIVSCEMHGRGI 128
Query: 102 DTRRSKLSTHCPLTIEYD 119
+ S HCP+++E
Sbjct: 129 ELDGFYGSDHCPVSLELS 146
>gi|300113189|ref|YP_003759764.1| endonuclease/exonuclease/phosphatase [Nitrosococcus watsonii C-113]
gi|299539126|gb|ADJ27443.1| Endonuclease/exonuclease/phosphatase [Nitrosococcus watsonii C-113]
Length = 289
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 28/108 (25%), Gaps = 21/108 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + V+ GD N +I+S + + R K
Sbjct: 172 DFISNLVHNHPYVVVMGDLNCQIHSPELRALLRKTGLKA-------PVTKIPTYPSWRPK 224
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+D+ ++ + + V S H PL E
Sbjct: 225 RHIDHILVSPSLEVIQVCALAHAV--------------SDHLPLATEI 258
>gi|126666553|ref|ZP_01737531.1| Exonuclease III [Marinobacter sp. ELB17]
gi|126628941|gb|EAZ99560.1| Exonuclease III [Marinobacter sp. ELB17]
Length = 268
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 10/89 (11%), Positives = 23/89 (25%), Gaps = 4/89 (4%)
Query: 33 INSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
+ D +++M ++ + I +
Sbjct: 181 PHERAWLDRLFEEMGSIDAFRDINKQSNQFTWWPEWASGWRKQSGI--RVDYQIATPGIR 238
Query: 93 IVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
Q ++ S H P+ ++YD E
Sbjct: 239 KTI--QDGWIDDDTRFSDHAPVVMDYDIE 265
>gi|302552172|ref|ZP_07304514.1| endonuclease/exonuclease/phosphatase [Streptomyces
viridochromogenes DSM 40736]
gi|302469790|gb|EFL32883.1| endonuclease/exonuclease/phosphatase [Streptomyces
viridochromogenes DSM 40736]
Length = 274
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 14/128 (10%), Positives = 25/128 (19%), Gaps = 13/128 (10%)
Query: 5 QGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDT---------DDFWQKMDPDGLLIR 54
Q L + + P V+ GD N + +S Q +
Sbjct: 145 QAAALAGFVARHRGGTPFPPVVTGDLNARPDSDEVRLLGGRGTAPAVPGQVLLDAWEYAD 204
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS---DLDTRRSKLSTH 111
+ + + D D S H
Sbjct: 205 PAAPAATWDAANPYVAAPHEPSARIDYVHVGPPGPGGLGRVRDVRRACDGPVDGVWPSDH 264
Query: 112 CPLTIEYD 119
+ + D
Sbjct: 265 AAVVADLD 272
>gi|254444166|ref|ZP_05057642.1| endonuclease/exonuclease/phosphatase family [Verrucomicrobiae
bacterium DG1235]
gi|198258474|gb|EDY82782.1| endonuclease/exonuclease/phosphatase family [Verrucomicrobiae
bacterium DG1235]
Length = 307
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 6/116 (5%)
Query: 5 QGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ E + ++ F+I GD N ++ + + + ES
Sbjct: 191 EAEAARDRILERFPDPSVSRFIIMGDLNDYRHTSSVRRFLER--GDVRISVIQEARDESG 248
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K +Y +ID + ++++ + S + + S H + E
Sbjct: 249 LIWTHFYKKGGEYSLIDYILCSPGLEDASEMKSAIYDSENYY--QGSDHRLVWTEL 302
>gi|15672773|ref|NP_266947.1| exodeoxyribonuclease A [Lactococcus lactis subsp. lactis Il1403]
gi|12723711|gb|AAK04889.1|AE006312_9 exodeoxyribonuclease A [Lactococcus lactis subsp. lactis Il1403]
gi|326406342|gb|ADZ63413.1| exodeoxyribonuclease III [Lactococcus lactis subsp. lactis CV56]
Length = 334
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 29/130 (22%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRFPQ---- 57
+ P GDFN I + + ++ G F Q
Sbjct: 208 LDAQKPVFACGDFNAAYTEIDLANPRGNHNSAGFTDQEREKFGQLLEAGFTDTFRQLHGQ 267
Query: 58 -------EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ +R K+S +L+ N + + S+ +L
Sbjct: 268 VEKFYEEGRSIYTWFAQRAKTSKLN-NSGWRIDYWLVSNRLAQ-AVKVSEPLDSGERL-D 324
Query: 111 HCPLTIEYDF 120
H P+ +E++
Sbjct: 325 HVPILLEFEL 334
>gi|330972028|gb|EGH72094.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 233
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 32/118 (27%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + L + +I G P ++AGDFN + + K
Sbjct: 132 RQQLKLLNELM-ARIPEGEPVIVAGDFNDWRQRADA-SLQGSGLHEVFVERFGAPAKSFP 189
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N+ S S S LS H PL +E
Sbjct: 190 ARW------------PLLCLDRIYVRNATSHRPKVLSSRPW--SHLSDHAPLAVELTL 233
>gi|256545331|ref|ZP_05472695.1| exodeoxyribonuclease III [Anaerococcus vaginalis ATCC 51170]
gi|256399012|gb|EEU12625.1| exodeoxyribonuclease III [Anaerococcus vaginalis ATCC 51170]
Length = 275
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 30/124 (24%), Gaps = 22/124 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+ + + GDFN I
Sbjct: 154 ENLDKNKAVIACGDFNVAHKEIDLKHPENNHESAGFTDEERNGFTNLLNKGFVDTFRYIH 213
Query: 57 QE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + +R K+S F++ + + + +D+ + H P+
Sbjct: 214 GDVEGKYTWWAQRVKTSKIN-NSGWRIDYFIVSDRIKDKIKESNMIDSGDRQ--DHTPIY 270
Query: 116 IEYD 119
+ D
Sbjct: 271 LSID 274
>gi|225869051|ref|YP_002744999.1| exodeoxyribonuclease [Streptococcus equi subsp. zooepidemicus]
gi|225702327|emb|CAX00133.1| exodeoxyribonuclease [Streptococcus equi subsp. zooepidemicus]
Length = 275
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 33/130 (25%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ Q + P + GD+N I + P
Sbjct: 150 ADYLAQ-LDAQKPVLATGDYNVAHKEIDLANPASNHRSPGFTDEERLGFTNLLNRGFTDT 208
Query: 52 LIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + +R+K+S R + + VS + R
Sbjct: 209 FRFIHGDIPNVYSWWAQRSKTSKLNNTGWRIDYWLTSNRLIDKVSRSEMISSGERQ---D 265
Query: 111 HCPLTIEYDF 120
H P+ +E D
Sbjct: 266 HTPILLEIDL 275
>gi|306834074|ref|ZP_07467194.1| exodeoxyribonuclease III [Streptococcus bovis ATCC 700338]
gi|304423647|gb|EFM26793.1| exodeoxyribonuclease III [Streptococcus bovis ATCC 700338]
Length = 275
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 41/143 (28%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
L + E W +K+AD ++ P + GD+N I + P
Sbjct: 136 LKRLAERQIWDEKYADYLTELDQVKPVLATGDYNVAHKEIDLAHPSSNRRSPGFTDEERA 195
Query: 50 -----------GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ +R+K+S +L + +
Sbjct: 196 GFTNLLAKGFTDTFRYIHGDIPDVYSWWAQRSKTSKIN-NSGWRIDYWLTSSRIADKITK 254
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+D+ + H P+ +E D
Sbjct: 255 SEMIDSGARQ--DHTPIVLEIDL 275
>gi|282877586|ref|ZP_06286401.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
buccalis ATCC 35310]
gi|281300158|gb|EFA92512.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
buccalis ATCC 35310]
Length = 316
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 33/119 (27%), Gaps = 15/119 (12%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ ++ GDFN + + + SLD+
Sbjct: 198 LSAHPHVLLMGDFNDYSKDENIRQLTEHGLVDVSQQAVGTHG-ARGTYRYRGDWGSLDHI 256
Query: 77 VID----RDNKNFLIDNSFSIVSYDQSDL----------DTRRSKLSTHCPLTIEYDFE 121
++D + + ++ ++ D+ ++ S H PL ++
Sbjct: 257 MVDEHTAQRLVECHVHDAPFLLKEDEKYGGVQPRRNYLGPRYQNGFSDHLPLVARLRWD 315
>gi|255721545|ref|XP_002545707.1| hypothetical protein CTRG_00488 [Candida tropicalis MYA-3404]
gi|240136196|gb|EER35749.1| hypothetical protein CTRG_00488 [Candida tropicalis MYA-3404]
Length = 350
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 30/140 (21%), Gaps = 31/140 (22%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN- 64
+ LK + P +AGD N + ++ G F +
Sbjct: 222 ADKLKNY------NEYPSFLAGDLNTEPTDEPH-----SILESSGFKDSFKLIGKKYSYG 270
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDN-------------------SFSIVSYDQSDLDTRR 105
+ S+ S+
Sbjct: 271 YNTSFTGFDKDNEPVSRIDYIWSPSYTTFDVGHESSKDEASNRFGVSLKSFGIVSNWFNG 330
Query: 106 SKLSTHCPLTIEYDFEKGNV 125
+ S H P+ Y+ + +
Sbjct: 331 NFFSDHRPVVATYEISRPRI 350
>gi|209558893|ref|YP_002285365.1| Putative 3-exo-deoxyribonuclease [Streptococcus pyogenes NZ131]
gi|209540094|gb|ACI60670.1| Putative 3-exo-deoxyribonuclease [Streptococcus pyogenes NZ131]
Length = 303
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 38/143 (26%), Gaps = 33/143 (23%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQK 45
+Q W K+AD ++ P + GD+N I + +
Sbjct: 169 DRQI-WDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPSSNRRSPGFTDEERQGFTN 227
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N +
Sbjct: 228 LLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKIN-NTGWRIDYWLASNRI------VDKV 280
Query: 102 DTRRSKLS----THCPLTIEYDF 120
S H P+ ++ D
Sbjct: 281 KRSEMISSGERQDHTPILLDIDL 303
>gi|53724878|ref|YP_104766.1| hypothetical protein BMA3294 [Burkholderia mallei ATCC 23344]
gi|52428301|gb|AAU48894.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
Length = 230
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 18/120 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ +TG P V+AGDFN N + ++ + + +
Sbjct: 129 RQMHWIAHWIERNARTG-PLVLAGDFNDWRNDS---IPLFGEIGLSEVATLLGESGRTFP 184
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + + + LS H P +
Sbjct: 185 AFSPALALDKMFVRGMTPLEWRAPGDE--------------TAWLSDHLPYVARLRLDPA 230
>gi|25011656|ref|NP_736051.1| hypothetical protein gbs1616 [Streptococcus agalactiae NEM316]
gi|77413444|ref|ZP_00789636.1| exodeoxyribonuclease III [Streptococcus agalactiae 515]
gi|24413196|emb|CAD47275.1| Unknown [Streptococcus agalactiae NEM316]
gi|77160538|gb|EAO71657.1| exodeoxyribonuclease III [Streptococcus agalactiae 515]
Length = 275
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 12/125 (9%), Positives = 32/125 (25%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+ + P + GD+N I + +
Sbjct: 154 ATLDSQKPVLATGDYNVAHKEIDLANPSSNRRSAGFTDEERQGFTNLLAKGFTDTFRYLH 213
Query: 57 QEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + +R+++S +L N + + + + H P+
Sbjct: 214 GDVPNVYSWWAQRSRTSKIN-NTGWRIDYWLTSNRVADKITKSEMIHSGDRQ--DHTPII 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 LEIEL 275
>gi|242036971|ref|XP_002465880.1| hypothetical protein SORBIDRAFT_01g047515 [Sorghum bicolor]
gi|241919734|gb|EER92878.1| hypothetical protein SORBIDRAFT_01g047515 [Sorghum bicolor]
Length = 495
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 36/122 (29%), Gaps = 15/122 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK------ 59
++L + + P+++ GDFN + + + + +
Sbjct: 83 AQFLDELLSFRNNHQGPWLLCGDFNMIYRAQDKNNGRLDRRGMRRFSAFLNRARLEELNL 142
Query: 60 --ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
R + + + + + + + L S S HCPL ++
Sbjct: 143 VGRKFTWSSHRQRP-------TLELLDRVFASVEWLEGFPNHVLKALSSDCSDHCPLLLQ 195
Query: 118 YD 119
+
Sbjct: 196 LE 197
>gi|156839947|ref|XP_001643659.1| hypothetical protein Kpol_1040p14 [Vanderwaltozyma polyspora DSM
70294]
gi|156114279|gb|EDO15801.1| hypothetical protein Kpol_1040p14 [Vanderwaltozyma polyspora DSM
70294]
Length = 784
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 23/152 (15%), Positives = 34/152 (22%), Gaps = 33/152 (21%)
Query: 5 QGEWLKKWADQKIKTGI-----------PFVIAGDFNRKINS--------------IGDT 39
Q L ++ +K P +I GD N ++S
Sbjct: 626 QVGILLDHLEELLKDNNNASSKQEIRKCPVIICGDLNSHLDSAVYELLSTGHVQVHKDIE 685
Query: 40 DDFWQKMDPDGLLI-------RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
+ F+ M + N +DY
Sbjct: 686 NRFYGYMSQKNFAHNLALRSSYDCIGELPFTNFTPSFTDVIDYIWYSTHALRVRGVLGPV 745
Query: 93 IVSYDQS-DLDTRRSKLSTHCPLTIEYDFEKG 123
Y S H PL Y+F KG
Sbjct: 746 DKDYVSKFIGFPNDKFPSDHIPLLARYEFTKG 777
>gi|126660414|ref|ZP_01731524.1| hypothetical protein CY0110_01310 [Cyanothece sp. CCY0110]
gi|126618280|gb|EAZ89039.1| hypothetical protein CY0110_01310 [Cyanothece sp. CCY0110]
Length = 125
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 26/125 (20%)
Query: 23 FVIAGDFNRK-----------INSIGDTDDFWQKMDPDGLLIRFP-----QEKESTCNVI 66
+I GD N + D F K V
Sbjct: 1 MIILGDLNDVTEAATTQILHGPGGSEIGTKGFSLPDQGDDARLFNLAPLIPPKRRFSRVF 60
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--------DQSDLD--TRRSKLSTHCPLTI 116
+ N +D+ ++ ++ + + S+ S+ R S H P+T
Sbjct: 61 RGNGELIDHILVSKELLPGNPPQTPVVDSHIDGLGSLPSISEQPSQRRGEPGSDHAPITA 120
Query: 117 EYDFE 121
+DF
Sbjct: 121 TFDFS 125
>gi|83770113|dbj|BAE60247.1| unnamed protein product [Aspergillus oryzae]
Length = 1191
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 29/120 (24%), Gaps = 17/120 (14%)
Query: 17 IKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQEKE 60
I+ + GDFN +I D +M + +
Sbjct: 785 IEDHEAIIWLGDFNYRIGLDSHFVRELVAQKDYQKLYNNDQLNLQMLAGRAFPFYTEGLI 844
Query: 61 STCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S + + Q D +T + + S H P+ +
Sbjct: 845 TFPPTYKYDIDSDTYDTSEKARIPAWCDRILWRGSCLRQIDYNTAKLRFSDHRPVWATFS 904
>gi|332288793|ref|YP_004419645.1| conserved hypothetical protein,
endonuclease/exonuclease/phosphatase family
[Gallibacterium anatis UMN179]
gi|330431689|gb|AEC16748.1| conserved hypothetical protein,
endonuclease/exonuclease/phosphatase family
[Gallibacterium anatis UMN179]
Length = 291
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 21/115 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L++ Q + +IAGDFN + + + E + +
Sbjct: 198 QQLEQIMQQLQQRVDAVIIAGDFNA-------WNQDRVAILQQKMAQFGLHEISFSPDNR 250
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
R + + K T+++K S H P+ +E F+
Sbjct: 251 LRFNGFPLDHIFVKGLKAVSAT--------------TKKTKASDHNPMWVELTFD 291
>gi|262371629|ref|ZP_06064908.1| conserved hypothetical protein [Acinetobacter junii SH205]
gi|262311654|gb|EEY92739.1| conserved hypothetical protein [Acinetobacter junii SH205]
Length = 446
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 43/131 (32%), Gaps = 12/131 (9%)
Query: 2 LSQ-QGEWLKKWADQK-IKTGIPFVIAGDFNRKIN-SIGDTDDFWQKMDPDGLLIRFPQE 58
L Q Q + +++ +Q+ I + ++ GDFN D D ++ +
Sbjct: 314 LRQVQFKQIRQLINQQNIPSFDAVLMGGDFNVNKFLWPQDYQDMLTNLNATAPISTGYTA 373
Query: 59 KESTCNVI---------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
V LDY V ++ + + + +D LS
Sbjct: 374 STFDPRVNKLAGAAGSGGTTVEYLDYVVSSNTHRQPIQSRNDVRILRSTADPLYMTWDLS 433
Query: 110 THCPLTIEYDF 120
H P+ +++
Sbjct: 434 DHFPVMGHFNY 444
>gi|78066588|ref|YP_369357.1| endonuclease/exonuclease/phosphatase [Burkholderia sp. 383]
gi|77967333|gb|ABB08713.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. 383]
Length = 284
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 10/95 (10%), Positives = 25/95 (26%), Gaps = 1/95 (1%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN S F + + + + +
Sbjct: 190 IVCGDFNSAFGSEAYRR-FMEPIADAPRFVDAWVARHPGRTPPPTAGVYDTVQWSEGPLA 248
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + +++ + S H P+ +E
Sbjct: 249 CDFVFVTDTLLPRVTRCEIDGDVRASDHQPVLLEL 283
>gi|28897872|ref|NP_797477.1| putative phospholipase C [Vibrio parahaemolyticus RIMD 2210633]
gi|260361802|ref|ZP_05774827.1| endonuclease/exonuclease/phosphatase [Vibrio parahaemolyticus
K5030]
gi|260877031|ref|ZP_05889386.1| endonuclease/exonuclease/phosphatase [Vibrio parahaemolyticus
AN-5034]
gi|28806085|dbj|BAC59361.1| putative phospholipase C precursor [Vibrio parahaemolyticus RIMD
2210633]
gi|308093920|gb|EFO43615.1| endonuclease/exonuclease/phosphatase [Vibrio parahaemolyticus
AN-5034]
gi|308113224|gb|EFO50764.1| endonuclease/exonuclease/phosphatase [Vibrio parahaemolyticus
K5030]
Length = 442
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 38/125 (30%), Gaps = 11/125 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I V +GDFN + GD +
Sbjct: 314 QRQFQQMRTMAQSLNIPNNETVVYSGDFNVNKLKFPGDYQQMIANLSAMEPQYSGYTAST 373
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ +L ++ N + + S++ + +D + LS H
Sbjct: 374 FDPRINNFAGEALSGGENVEYLDYVMVSNEYGVKSFNDNRVDVPRSTAEGLWKHYNLSDH 433
Query: 112 CPLTI 116
P++
Sbjct: 434 FPVSA 438
>gi|46129427|ref|XP_389065.1| hypothetical protein FG08889.1 [Gibberella zeae PH-1]
Length = 609
Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 35/150 (23%), Gaps = 39/150 (26%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
+ L + G V+ GD N + + F Q
Sbjct: 175 QALDVRIRNLVAAGKQVVLTGDLNIVRSEVDSTNVSETLRKGNFDLNEWMNIPARRIFNQ 234
Query: 45 KMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKNFLIDN 89
+ +L Q +++ K + L +
Sbjct: 235 LIFEGSVLGERDQGRKAPVLWDLCRCFHPERAGMNTCWDTKRNTRPANNGSRIDYVLCSD 294
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ S++ S HCP+ +
Sbjct: 295 GIKSW-FNFSNIQE-GLMGSDHCPVFAIFS 322
>gi|312873321|ref|ZP_07733376.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2052A-d]
gi|311091201|gb|EFQ49590.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2052A-d]
Length = 275
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 22/124 (17%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIRFPQE- 58
K+ P + +GD+N I F + + +
Sbjct: 155 KLDQNKPVIASGDYNVAHQEIDLKHPETNHHNAGFTDEERKGFSKLLSLGFIDTFRYING 214
Query: 59 --KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ +R ++S +L+ + +DT K HCP+ +
Sbjct: 215 DITDVYSWWSQRIRTSKTN-NAGWRIDYYLVSQRLADKIEQSKMIDTGDRK--DHCPILL 271
Query: 117 EYDF 120
+ D
Sbjct: 272 KIDL 275
>gi|218670459|ref|ZP_03520130.1| hypothetical protein RetlG_01772 [Rhizobium etli GR56]
Length = 230
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 24/167 (14%), Positives = 46/167 (27%), Gaps = 50/167 (29%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L +Q + L +W + G ++AGDFNR++ GD + G+ +
Sbjct: 63 LMKQTDILSEWIRTERAAGKKVIVAGDFNRQLLDTGDRVAAKLRAVDPGVQFYPTSRQCW 122
Query: 62 TCNVIKR---------------------------NKSSLDYFVIDRDNKNFLIDNSFSIV 94
+ + S +DYFV+ I + +
Sbjct: 123 ASFPNRGAVIIAAANQKFPEIGAAGGRPLPYSPKSNSKIDYFVVSGPVSQTPISSEQYAM 182
Query: 95 SYDQSDLDTRRSK-----------------------LSTHCPLTIEY 118
+ + S HCP+++
Sbjct: 183 GREAKTTELATDYLKTCEGKPNKFEDGSVLTFSEVEPSDHCPISMTL 229
>gi|260817292|ref|XP_002603521.1| hypothetical protein BRAFLDRAFT_79056 [Branchiostoma floridae]
gi|229288840|gb|EEN59532.1| hypothetical protein BRAFLDRAFT_79056 [Branchiostoma floridae]
Length = 282
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 1/97 (1%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
+I GDFN N + + + + ++ V N + V
Sbjct: 185 IMIMGDFNADCNYVRPSHWDSISLWTRYRTYDWLIGHDADTTVTSTNCAYDRIVVSGPTL 244
Query: 83 KNFLIDNSFSIVSYDQSDLDT-RRSKLSTHCPLTIEY 118
K ++ +S S+ + ++ + +S H P+ ++
Sbjct: 245 KGSVLPHSASVYDFSRNLHCNCQAEAVSDHYPVEVDL 281
>gi|94993733|ref|YP_601831.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS10750]
gi|94547241|gb|ABF37287.1| Exodeoxyribonuclease III [Streptococcus pyogenes MGAS10750]
Length = 303
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 25/139 (17%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQK 45
+Q W K+AD ++ T P + GD+N I + +
Sbjct: 169 DRQI-WDHKYADYLTELDTQKPVLATGDYNVAHKEIDLANPSSNRRSPGFTDEERQGFTN 227
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N +
Sbjct: 228 LLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKIN-NTGWRIDYWLASNRIVDKIKRSEMI 286
Query: 102 DTRRSKLSTHCPLTIEYDF 120
+ + H P+ ++ D
Sbjct: 287 SSGERQ--DHTPILLDIDL 303
>gi|322709548|gb|EFZ01124.1| DNA lyase [Metarhizium anisopliae ARSEF 23]
Length = 608
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 15/149 (10%), Positives = 31/149 (20%), Gaps = 39/149 (26%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQ 44
E L + G ++ GD N + + F Q
Sbjct: 152 EALDVRIRNLVAEGKEVILTGDLNVIRSEVDSTNVMENLRKENMTIGEWISLPTRRIFNQ 211
Query: 45 KMDPDGLLIRFPQEKESTCNVI---------------KRNKSSLDYFVIDRDNKNFLIDN 89
+ ++ + +++ K + L N
Sbjct: 212 LIFEGNIVGDRDEGRQTPVLWDLCRCFHPSRLGMNTCWDTKKNTRPANNGSRIDYILCSN 271
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S HCP+
Sbjct: 272 GIRDWFTWANIQE--GLMGSDHCPVFATI 298
>gi|312171429|emb|CBX79687.1| UPF0294 protein Ent638_0743 [Erwinia amylovora ATCC BAA-2158]
Length = 268
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 21/109 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q I P ++AGDFN Q+++ R +E R K+
Sbjct: 176 EQIIHHQGPVIMAGDFNA---------WSRQRINALYRFAREMGLREVRFTDDHRRKAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + S + + S H PL +E+DF+
Sbjct: 227 RPLDFIFYRGMDVTEASVLVT------------RASDHNPLLVEFDFDS 263
>gi|171910959|ref|ZP_02926429.1| hypothetical protein VspiD_07285 [Verrucomicrobium spinosum DSM
4136]
Length = 300
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 19/118 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L W + +TG P + GD+N + + G ++ +
Sbjct: 200 QTAQLIPWVKKVRETGAPALWTGDWNNTPDGD-----VLSPLMEAGAWKLLSTDQPRVDH 254
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
V + V L + S H + ++ +
Sbjct: 255 VFGSGEGWEWQVVDQGKVNGKLESDPTVPW--------------SDHAAVWVDVELRS 298
>gi|227819964|ref|YP_002823935.1| endonuclease/exonuclease/phosphatase family protein [Sinorhizobium
fredii NGR234]
gi|36958668|gb|AAQ87136.1| Dioxygenase [Sinorhizobium fredii NGR234]
gi|227338963|gb|ACP23182.1| putative Endonuclease/Exonuclease/phosphatase family protein
[Sinorhizobium fredii NGR234]
Length = 264
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 29/118 (24%), Gaps = 16/118 (13%)
Query: 4 QQGEWLKK--WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L W + ++AGD N S + L ++
Sbjct: 136 RQATTLLGPGWLGGIGQGDSRVILAGDLNAIARSAA-YKLLAAHLKDAQLQLKAKPRPTF 194
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + ++ R S H P+ E +
Sbjct: 195 PS------------RLPLLRLDHVFVGDGINVGDCTVHSSALARV-ASDHLPILAELE 239
>gi|317147744|ref|XP_001822249.2| inositol-1,4,5-trisphosphate 5-phosphatase 1 [Aspergillus oryzae
RIB40]
Length = 1168
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 29/120 (24%), Gaps = 17/120 (14%)
Query: 17 IKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQEKE 60
I+ + GDFN +I D +M + +
Sbjct: 762 IEDHEAIIWLGDFNYRIGLDSHFVRELVAQKDYQKLYNNDQLNLQMLAGRAFPFYTEGLI 821
Query: 61 STCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S + + Q D +T + + S H P+ +
Sbjct: 822 TFPPTYKYDIDSDTYDTSEKARIPAWCDRILWRGSCLRQIDYNTAKLRFSDHRPVWATFS 881
>gi|148273865|ref|YP_001223426.1| putative hydrolase [Clavibacter michiganensis subsp. michiganensis
NCPPB 382]
gi|147831795|emb|CAN02765.1| conserved hypothetical protein, putative hydrolase [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 281
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 10/90 (11%), Positives = 20/90 (22%), Gaps = 4/90 (4%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P ++AGD N +++ D + + R
Sbjct: 187 PTIVAGDTNAGVDTEPHRLLLEHGALVDAWPAARERLTPEWGTWS----NYKAPKRTTRR 242
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
L+ + + S H
Sbjct: 243 IDWMLVTPDIEVERVGINTTRIGGRAPSDH 272
>gi|73540148|ref|YP_294668.1| endonuclease/exonuclease/phosphatase [Ralstonia eutropha JMP134]
gi|72117561|gb|AAZ59824.1| Endonuclease/exonuclease/phosphatase [Ralstonia eutropha JMP134]
Length = 262
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 26/116 (22%), Gaps = 15/116 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q E L + + + P VIAGDFN + + +
Sbjct: 143 ARQAEALVERVRTVVPSTAPLVIAGDFNDWNHRLDSQICNTLGAVEASHARGARLHTFPS 202
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S H PL E
Sbjct: 203 HMPWWQLDRIYVRGFEIERAHALTGRDWAQR---------------SDHVPLVAEL 243
>gi|328873522|gb|EGG21889.1| hypothetical protein DFA_01775 [Dictyostelium fasciculatum]
Length = 296
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 32/126 (25%), Gaps = 25/126 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDT---DDFWQKMDPDGLLIRFPQEKESTC--------- 63
+ IP +I GDFN ++ S D + + + +
Sbjct: 171 HLDPSIPCIITGDFNEEVGSKPYRNIIDKMDDMVGHKYMNMLKIPIAPTYSLKTFKDCSK 230
Query: 64 ------NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-----SDLDTRRSKLSTHC 112
D ++ S V Q ++T K S H
Sbjct: 231 AANNRDGPFHTFTGFTDE--YKVTIDYIFVNASVKSVDKFQVLTGHLKIETDGLKPSDHL 288
Query: 113 PLTIEY 118
P+ +
Sbjct: 289 PIYADL 294
>gi|326335303|ref|ZP_08201498.1| endonuclease/exonuclease/phosphatase [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325692574|gb|EGD34518.1| endonuclease/exonuclease/phosphatase [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 343
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 29/114 (25%), Gaps = 19/114 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E AD + P ++ GDFN S + + QE+ S
Sbjct: 245 QVELFDAHADT---SPYPIIVCGDFNNTAFSYLYQKIQNRGLIDS------FQEEGSGFG 295
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
D F I S+ S H PL +
Sbjct: 296 KTYYFPYF------PFRIDYIFADPYFKITSHKVYTGINY----SDHYPLKATF 339
>gi|255533667|ref|YP_003094039.1| endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
gi|255346651|gb|ACU05977.1| Endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
Length = 269
Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 19/115 (16%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
++ + +P ++ GD N S + D R E +
Sbjct: 174 QMQSILKEFEHAALPVILCGDLNSVAGSSVIS-------LLDAQFKRTCTENCPPTSPQI 226
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ ++DY + ++ ++ Y + S H P+ ++ EK
Sbjct: 227 NPRRTIDYI--------ATKNVTWPLLEYQVI----AETYASDHRPVMAIFNLEK 269
>gi|326472928|gb|EGD96937.1| SacI domain-containing protein [Trichophyton tonsurans CBS 112818]
Length = 1091
Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 10/101 (9%), Positives = 24/101 (23%), Gaps = 3/101 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P + +GD + + + + N + +
Sbjct: 749 RPLIESGDIDVLYQHDQLNLQMVAGLAFQYYMEGPVTFPPTY---RYDNGTDEYDTSEKQ 805
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + Q T K S H P+ ++ +
Sbjct: 806 RIPAWCDRILWRGRILRQLAYTTAPLKFSDHRPVYATFECD 846
>gi|270295351|ref|ZP_06201552.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270274598|gb|EFA20459.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 366
Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 12/111 (10%), Positives = 21/111 (18%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ GDFN S +
Sbjct: 268 QADTIAHEIAA--SPHPYIIVCGDFNDTPISYTHRTIAQDL-------DDAFTQSGRGLG 318
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N L + + K S H P+
Sbjct: 319 ISYNQNRFYF------RIDNILTSKNLRAYNCTVDRSI----KESDHYPIW 359
>gi|242082908|ref|XP_002441879.1| hypothetical protein SORBIDRAFT_08g004125 [Sorghum bicolor]
gi|241942572|gb|EES15717.1| hypothetical protein SORBIDRAFT_08g004125 [Sorghum bicolor]
Length = 605
Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 6/113 (5%)
Query: 11 KWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV---I 66
W ++ + ++I GDFN S + ++ + V
Sbjct: 39 DWLKHIQMPDDLEWIIVGDFNLMRKSQD-RNKEGGDLNEMFMFNDAISALALNEIVLQGR 97
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
K S++ + + N++ + Y + S HCPL +
Sbjct: 98 KYTWSNMQPSPLLQKIDWVFTSNAW-TLKYPDTSATILDRTPSDHCPLLVTIS 149
>gi|315659955|ref|ZP_07912813.1| sphingomyelin phosphodiesterase [Staphylococcus lugdunensis M23590]
gi|315494856|gb|EFU83193.1| sphingomyelin phosphodiesterase [Staphylococcus lugdunensis M23590]
Length = 329
Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 32/130 (24%), Gaps = 14/130 (10%)
Query: 1 MLSQQGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDT---DDFWQKMDPDGLLIRFP 56
+ Q E +K++ D+ I P I GD N S D+ M +
Sbjct: 196 IRQSQMEEIKQFIKDKNIPKDEPVYIGGDLNVIKGSAEYQKMSDNLNVSMPKQYEGNAYS 255
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------- 108
+ ++ + S + K
Sbjct: 256 WDTQTNGIANYNYPKLEPQHLDYILLDRDHAQPSSWHNHTHKVKSPEWSVKSWGKTYRYN 315
Query: 109 --STHCPLTI 116
S H P++
Sbjct: 316 DYSDHYPVSA 325
>gi|271969028|ref|YP_003343224.1| metal-dependent hydrolase-like protein [Streptosporangium roseum
DSM 43021]
gi|270512203|gb|ACZ90481.1| Metal-dependent hydrolase-like protein [Streptosporangium roseum
DSM 43021]
Length = 313
Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 30/115 (26%), Gaps = 13/115 (11%)
Query: 12 WADQKIKTGIP----FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
WAD P V+AGDFN ++ D T
Sbjct: 207 WADGLAALPRPGGAVQVLAGDFNATLDHARIRDLLDAGYRDAADA----TGDGLTTTWPF 262
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
R + + + + L D + S+ L H + E +
Sbjct: 263 RPRRFNGFGIPTVTIDHILADRRVGVRSFGVHRLPDT-----DHRAVFAELVLPR 312
>gi|162455565|ref|YP_001617933.1| hypothetical protein sce7284 [Sorangium cellulosum 'So ce 56']
gi|161166147|emb|CAN97452.1| hypothetical protein sce7284 [Sorangium cellulosum 'So ce 56']
Length = 354
Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 34/116 (29%), Gaps = 7/116 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ--EKES 61
++ L + ++ ++ FV+ GDFN S +++ + E E+
Sbjct: 236 EEARVLADFVRRERRSD-NFVVVGDFNSLPGS-PVDRFLREEIGFVDAFAKVRCFSETEA 293
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + ++ + + LS H PL
Sbjct: 294 RAFPTAGFMNLRMHLDHVYSSERLQWLDFTGTHPFGHKGAFAG---LSDHVPLIAR 346
>gi|28867571|ref|NP_790190.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213971019|ref|ZP_03399140.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato T1]
gi|301385582|ref|ZP_07234000.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato Max13]
gi|302058834|ref|ZP_07250375.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato K40]
gi|302132137|ref|ZP_07258127.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|28850806|gb|AAO53885.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213924255|gb|EEB57829.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato T1]
Length = 291
Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 13/113 (11%), Positives = 27/113 (23%), Gaps = 22/113 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N N + + + R +
Sbjct: 186 AYIRELIGGYRHQVLMGDMNTHANDLLEHSPLRDLGLLAPQIEA--------TFPSWRPQ 237
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
LD+ ++ + +S H P+ +E
Sbjct: 238 RCLDHILLSPTLTL--------------ERVQVLAHPISDHLPVAVEIRLPAS 276
>gi|327287972|ref|XP_003228702.1| PREDICTED: LOW QUALITY PROTEIN: deoxyribonuclease-1-like [Anolis
carolinensis]
Length = 307
Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 41/118 (34%), Gaps = 5/118 (4%)
Query: 5 QGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D + ++ GDFN + + D ++ D + +
Sbjct: 161 EIDALYDVYLDVKHRWGTQDVLLLGDFNAGCSFVRAQDWAHIRLRTDPAFQWLIPDT-AD 219
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
+ + + + + L+ S + ++ ++ + + L S H P+ +
Sbjct: 220 TTAGRSDCAYDRIVAVGAHLQGGLLPGSAQVNNFQETFRLSYKDALAVSDHYPVEVTL 277
>gi|319745559|gb|EFV97861.1| exodeoxyribonuclease III [Streptococcus agalactiae ATCC 13813]
Length = 275
Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 12/125 (9%), Positives = 32/125 (25%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFP 56
+ + P + GD+N I + +
Sbjct: 154 ATLDSQKPVLATGDYNVAHKEIDLANPSSNRRSAGFTDEERQGFTNLLAKGFTDTFRYLH 213
Query: 57 QEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + +R+++S +L N + + + + H P+
Sbjct: 214 GDVPNVYSWWAQRSRTSKIN-NTGWRIDYWLTSNRVADKITKSEMIHSGDRQ--DHTPII 270
Query: 116 IEYDF 120
+E +
Sbjct: 271 LEIEL 275
>gi|291514627|emb|CBK63837.1| Metal-dependent hydrolase [Alistipes shahii WAL 8301]
gi|313156836|gb|EFR56276.1| endonuclease/exonuclease/phosphatase family protein [Alistipes sp.
HGB5]
Length = 278
Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 13/108 (12%), Positives = 27/108 (25%), Gaps = 9/108 (8%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
Q ++ GD N I+ + + + R + S+
Sbjct: 180 IRQIAGKKAAVILGGDLNTSID-----NPHLKPLTRLMASARDTAAETDQKGTFNGFGSA 234
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
D + + D D +S H P+ + +
Sbjct: 235 PDTI----ILDHLFYRGRMKCRKFVTLDGDYGAPYISDHYPIAMVFTL 278
>gi|171060370|ref|YP_001792719.1| endonuclease/exonuclease/phosphatase [Leptothrix cholodnii SP-6]
gi|170777815|gb|ACB35954.1| Endonuclease/exonuclease/phosphatase [Leptothrix cholodnii SP-6]
Length = 358
Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 29/120 (24%), Gaps = 18/120 (15%)
Query: 4 QQGEWLKKWADQKIKTG-----IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
+Q L + + P ++AGD N +S +
Sbjct: 247 KQARQLVRDLTETPLLDSRGMAQPLIVAGDLNAPESSPVVQSLLALGLRDAWSSAAIGYG 306
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ SL + + L+ ++ S H P+ +
Sbjct: 307 --------YTHGHSLRPNIDLLRIDHILVSPQV-----GVERTFVGGTEGSEHRPVITDL 353
>gi|332374334|gb|AEE62308.1| unknown [Dendroctonus ponderosae]
Length = 410
Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 21/135 (15%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI------R 54
+ ++QG+ L ++ Q P +++GDFN +
Sbjct: 264 LRNEQGKDLLEFVRQNC-GDRPTILSGDFNAEPAEPIYGTVLGSGQHLASAYAECAGNGW 322
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS----------FSIVSYDQSDLDTR 104
P +K + D + + + + +
Sbjct: 323 IPSDKREPPYTTWK---IRDEGEVCHTIDYIFYSKNKLDVDGVLELPTEKDIGPDRVPSL 379
Query: 105 RSKLSTHCPLTIEYD 119
R S H L ++
Sbjct: 380 R-YPSDHFSLICDFR 393
>gi|301385402|ref|ZP_07233820.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato Max13]
gi|302060619|ref|ZP_07252160.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato K40]
gi|302129991|ref|ZP_07255981.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato NCPPB 1108]
Length = 261
Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + L + D ++ G P ++AGDFN + L ++
Sbjct: 160 RQQLKLLAQLMD-RLPEGAPVIVAGDFND-------WRQRADALLQGTGLHEVFVQRFGA 211
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + N+ S S S LS H PL +E
Sbjct: 212 P------AKSFPARWPLLRLDRIYVRNATSHRPKVLSSRPW--SHLSDHAPLAVEVTL 261
>gi|157146576|ref|YP_001453895.1| hypothetical protein CKO_02337 [Citrobacter koseri ATCC BAA-895]
gi|157083781|gb|ABV13459.1| hypothetical protein CKO_02337 [Citrobacter koseri ATCC BAA-895]
Length = 253
Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W + + P V+AGDFN ++
Sbjct: 150 RQAQLDMLVEWVNA-LPESEPVVVAGDFNDWRQKANYPLKASAGLEE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + + N+ + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVRLPILRLDRIYVKNANASSPAALP--LRNWRHLSDHAPLSAEIHL 253
>gi|257082798|ref|ZP_05577159.1| predicted protein [Enterococcus faecalis E1Sol]
gi|256990828|gb|EEU78130.1| predicted protein [Enterococcus faecalis E1Sol]
Length = 278
Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N +
Sbjct: 181 AQYPTLLMGDFNAESGE-AVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 234
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 235 LEEIDYIYVKGWQVQKTAS-LTDSIDGRFPSDHFPLEAE 272
>gi|332291109|ref|YP_004429718.1| Endonuclease/exonuclease/phosphatase [Krokinobacter diaphorus
4H-3-7-5]
gi|332169195|gb|AEE18450.1| Endonuclease/exonuclease/phosphatase [Krokinobacter diaphorus
4H-3-7-5]
Length = 341
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 18/117 (15%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + K+ + + + P ++ GDFN S K+D + +
Sbjct: 239 FEKQETQVAKFLNNEATSPYPVIVTGDFNNSATSYMYRKVKGDKVDA---FAKAGSGTGA 295
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
T +I L+D S ++ +T LS H P +
Sbjct: 296 TFWFD----------IIPLRIDFILVDESL-----PVTNFETYDVDLSDHKPSMATF 337
>gi|330876694|gb|EGH10843.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 261
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 32/118 (27%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + L + +I G P ++AGDFN + + K
Sbjct: 160 RQQLKLLNELM-ARIPEGEPVIVAGDFNDWRQRADA-SLQGSGLHEVFVQRFGAPAKSFP 217
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N+ S S S LS H PL +E
Sbjct: 218 ARW------------PLLRLDRIYVRNATSHRPKVLSSRPW--SHLSDHAPLAVEVTL 261
>gi|326693809|ref|ZP_08230814.1| exodeoxyribonuclease III [Leuconostoc argentinum KCTC 3773]
Length = 272
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 11/132 (8%), Positives = 34/132 (25%), Gaps = 21/132 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
+ + + + P + +GD N I +
Sbjct: 144 DAYRAYISS-LDAQKPVIFSGDMNVAHQEIDLKNPKTNHKSAGFTDQEREKFTALLSTGF 202
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + + +L+ + + + + +DT +
Sbjct: 203 TDTMRAQNPDTPGIYTWWAQISKTSKINNSGWRIDYYLVSDRIADKVTETAVIDTGLRQ- 261
Query: 109 STHCPLTIEYDF 120
H P++++ F
Sbjct: 262 -DHAPISLKMAF 272
>gi|313122838|ref|YP_004033097.1| exonuclease iii [Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312279401|gb|ADQ60120.1| Exonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 265
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIR 54
+ + ++ + P + +GDFN I + ++ G
Sbjct: 140 RAYLEE-LDKKKPVLASGDFNAAYQEIDLKHPENNHHSAGFTDEERAGFGQLLAAGFTDT 198
Query: 55 FPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q +R +++ +L+ N + ++S++ +
Sbjct: 199 FRQIHGQVEGVYSWWAQRVRTAKAN-NSGWRIDYWLVSNRLA-DQVEKSEMIETGERA-D 255
Query: 111 HCPLTIEYDF 120
HCP+ +E
Sbjct: 256 HCPILLEIKL 265
>gi|257886279|ref|ZP_05665932.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium
1,231,501]
gi|257822135|gb|EEV49265.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium
1,231,501]
Length = 274
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 2/106 (1%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
++T +P GDFN ++S G + + ++ ++ V K+
Sbjct: 171 LETRVPLFFLGDFNNPVDSQGYYTVRESCLLLQDSYVVANEKGKAAT-VEKKIDGWEQNT 229
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + Y + +S H + IE D +
Sbjct: 230 -EKLRIDFIFVSEGMQVKKYQRIFDGIDSPIISDHYGVEIELDVNE 274
>gi|167579454|ref|ZP_02372328.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
thailandensis TXDOH]
gi|167617551|ref|ZP_02386182.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
thailandensis Bt4]
gi|257140578|ref|ZP_05588840.1| endonuclease/exonuclease/phosphatase [Burkholderia thailandensis
E264]
Length = 270
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ G P V+AGDFN N + ++ + + +
Sbjct: 169 RQMHWIAHWIERNAGAG-PLVLAGDFNDWRNDS---IPLFGEIGLSEVATLLGESGRTFP 224
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + LS H P +
Sbjct: 225 AFSPALALDKMFVRGMTPLEWRAPGDE--------------TAWLSDHLPYVARLRLD 268
>gi|331014877|gb|EGH94933.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. lachrymans str. M302278PT]
Length = 291
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 13/113 (11%), Positives = 27/113 (23%), Gaps = 22/113 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N N + + + R +
Sbjct: 186 AYIRELIGGYRHQVLMGDMNTHANDLLEHSPLRDLGLLAPQIEA--------TFPSWRPQ 237
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
LD+ ++ + +S H P+ +E
Sbjct: 238 RCLDHILLSPTLTL--------------ERVQVLAHPISDHLPVAVEIRLPAS 276
>gi|325269228|ref|ZP_08135847.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
multiformis DSM 16608]
gi|324988457|gb|EGC20421.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
multiformis DSM 16608]
Length = 326
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 13/135 (9%), Positives = 37/135 (27%), Gaps = 17/135 (12%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++++ + + + + ++ GDFN +S + +
Sbjct: 195 VVNRLCDAVDSL--RLCHSDPKVLVMGDFNDYPDSPSLQTAYTHGLVNVSAEA-RGSNGA 251
Query: 61 STCNVIKRNKSSLDYF----VIDRDNKNFLIDNSFSIVSYDQSDL----------DTRRS 106
SLD + + ++ ++ D+ +
Sbjct: 252 KGTYRYHGAWGSLDQILVSENLRERVSGCHVHDAVFLLEPDEKYGGVKPRRNYNGMRYNN 311
Query: 107 KLSTHCPLTIEYDFE 121
S H PL + + +
Sbjct: 312 GFSDHLPLVLHLELK 326
>gi|330874571|gb|EGH08720.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. morsprunorum str. M302280PT]
Length = 291
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 13/113 (11%), Positives = 27/113 (23%), Gaps = 22/113 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N N + + + R +
Sbjct: 186 AYIRELIGGYRHQVLMGDMNTHANDLLEHSPLRDLGLLAPQIEA--------TFPSWRPQ 237
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
LD+ ++ + +S H P+ +E
Sbjct: 238 RCLDHILLSPTLTL--------------ERVQVLAHPISDHLPVAVEIRLPAS 276
>gi|300811911|ref|ZP_07092372.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300497108|gb|EFK32169.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 275
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIR 54
+ + ++ + P + +GDFN I + ++ G
Sbjct: 150 RAYLEE-LDKKKPVLASGDFNAAYQEIDLKHPKNNHHSAGFTDEERAGFGQLLAAGFTDT 208
Query: 55 FPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q +R +++ +L+ N + ++S++ +
Sbjct: 209 FRQIHGQVEGVYSWWAQRVRTAKAN-NSGWRIDYWLVSNRLA-DQVEKSEMIETGERA-D 265
Query: 111 HCPLTIEYDF 120
HCP+ +E
Sbjct: 266 HCPILLEIKL 275
>gi|150008523|ref|YP_001303266.1| hypothetical protein BDI_1909 [Parabacteroides distasonis ATCC
8503]
gi|256841460|ref|ZP_05546967.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|149936947|gb|ABR43644.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
gi|256737303|gb|EEU50630.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 246
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 27/107 (25%), Gaps = 20/107 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ P +I GDFN + +S + + L
Sbjct: 160 ETMKSENKPILITGDFNMEPDSKEFKAMKQTWRLLSDPTLE--------TYPSDHPRLRL 211
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
DY D + + + S H P+ I+ F
Sbjct: 212 DYIFGDLR------------HEFRIINDQVIDIQSSDHLPIYIDVLF 246
>gi|109809705|dbj|BAE96964.1| deoxyribonuclease I splicing isomer 1 [Homo sapiens]
Length = 282
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 39/116 (33%), Gaps = 5/116 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D + K G ++ GDFN + + + ++ + +
Sbjct: 165 EIDALYDVYLDVQEKWGLEDVMLMGDFNAGCSYVRPSQWSSIRLWTSPTFQWLIPDS-AD 223
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTI 116
+ + V + ++ +S ++ + + +S H P+ +
Sbjct: 224 TTATPTHCAYDRIVVAGMLLRGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEV 279
>gi|71910153|ref|YP_281703.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS5005]
gi|71852935|gb|AAZ50958.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS5005]
Length = 303
Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 38/143 (26%), Gaps = 33/143 (23%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQK 45
+Q W K+AD ++ P + GD+N I + +
Sbjct: 169 DRQI-WDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPNSNRRSPGFTDEERQGFTN 227
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N +
Sbjct: 228 LLARGFTDTFRHVHGDIPHVYTWWAQRSKTSKIN-NTGWRIDYWLASNRL------VDKV 280
Query: 102 DTRRSKLS----THCPLTIEYDF 120
S H P+ ++ D
Sbjct: 281 KRSEMISSGERQDHTPILLDIDL 303
>gi|332293386|ref|YP_004431995.1| Endonuclease/exonuclease/phosphatase [Krokinobacter diaphorus
4H-3-7-5]
gi|332171472|gb|AEE20727.1| Endonuclease/exonuclease/phosphatase [Krokinobacter diaphorus
4H-3-7-5]
Length = 1548
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 14/125 (11%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINS------IGDTDDFWQKMDPDGLLIRFPQ-- 57
E LK D + ++ GD+N ++ F +
Sbjct: 1139 VEVLKDSLDVQFS-DRKIILLGDYNDDVDETVADEVPTTESSFIAYVQDSENYNVVTSVL 1197
Query: 58 -EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ V + N + + S YD+ S H P++
Sbjct: 1198 SDAGFRSFVSRENMIDHIAITDELFDNYIESSASVGYQFYDED----YAFTASDHFPVSA 1253
Query: 117 EYDFE 121
+ F+
Sbjct: 1254 RFIFD 1258
>gi|288574157|ref|ZP_06392514.1| Endonuclease/exonuclease/phosphatase [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288569898|gb|EFC91455.1| Endonuclease/exonuclease/phosphatase [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 242
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 24/117 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L+ + P ++AGD+N + G+ +
Sbjct: 147 RHQIRALRDLCSAR---ERPLILAGDYNTLSGPEE-----LAPLRETGMASVNELGLPTY 198
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R ++ LI S + D+ + S H PL + +
Sbjct: 199 PCRRPR-----------KELDFVLISEEISTKGFFIPDV-----RFSDHLPLICDLE 239
>gi|237730766|ref|ZP_04561247.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226906305|gb|EEH92223.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 253
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L W + + P VIAGDFN + K D + R
Sbjct: 150 RQAQLAMLADWVNA-LPDAEPVVIAGDFNDWRQTA--NRPLKAKAGLDEIFTRAH----- 201
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ + + LS H PL+ E
Sbjct: 202 -----GRPARTFPVQFPLLRLDRIYVKNANASTP--TTLALRHWRHLSDHAPLSAEIHL 253
>gi|190893918|ref|YP_001980460.1| phosphatase [Rhizobium etli CIAT 652]
gi|190699197|gb|ACE93282.1| putative phosphatase protein [Rhizobium etli CIAT 652]
Length = 288
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 35/139 (25%), Gaps = 28/139 (20%)
Query: 4 QQGEWLKKWADQKIKTG-----------------IPFVIAGDFNRKINSIGDTDDFWQKM 46
+Q ++L + ++ G +VI GDFN + S
Sbjct: 152 RQLQFLNAQINAFVQEGGSLTGAAEFDLPEPPLPEDYVILGDFNMEPESPEYCALAGAAG 211
Query: 47 DPDGLLIRFPQEKEST-----CNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQS 99
G + R ++ + + + + + S
Sbjct: 212 GYYGRVARIGTPIDAFAALEAYRPESYSWMNPENHGERMHLDYCFVSCGLVSRLQSARID 271
Query: 100 DLDTRRSKLSTHCPLTIEY 118
S H PL +E
Sbjct: 272 TQSPG----SDHFPLWVEI 286
>gi|1197173|dbj|BAA11841.1| deoxyribonuclease I precursor [Homo sapiens]
Length = 282
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 39/116 (33%), Gaps = 5/116 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D + K G ++ GDFN + + + ++ + +
Sbjct: 165 EIDALYDVYLDVQEKWGLEDVMLMGDFNAGCSYVRPSQWSSIRLWTSPTFQWLIPDS-AD 223
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTI 116
+ + V + ++ +S ++ + + +S H P+ +
Sbjct: 224 TTATPTHCAYDRIVVAGMLLQGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEV 279
>gi|330924640|ref|XP_003300719.1| hypothetical protein PTT_12052 [Pyrenophora teres f. teres 0-1]
gi|311325004|gb|EFQ91187.1| hypothetical protein PTT_12052 [Pyrenophora teres f. teres 0-1]
Length = 617
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 5/118 (4%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q K+ + + AGDFN + D + + E
Sbjct: 500 EQSRLTAKFIKDILSKDKSARIITAGDFNEFAFVEPLEEYTTISGLKDLDAVVGIDKVER 559
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N LD+ + I + +++S H P + +
Sbjct: 560 YTYMFDMNTQQLDHMYVSPSLAKKSKAAYEHIH---VNTWPEFAAQVSDHDPSVAKLN 614
>gi|331682296|ref|ZP_08382915.1| putative cytoplasmic protein [Escherichia coli H299]
gi|331079927|gb|EGI51106.1| putative cytoplasmic protein [Escherichia coli H299]
Length = 253
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D +
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDEIFTRAHGRPARTF 208
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V + I + S + LS H PL+ E
Sbjct: 209 P--------------VQFPLLQLDRIYVKNASASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|295397847|ref|ZP_06807910.1| exodeoxyribonuclease III [Aerococcus viridans ATCC 11563]
gi|294973892|gb|EFG49656.1| exodeoxyribonuclease III [Aerococcus viridans ATCC 11563]
Length = 275
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 30/122 (24%), Gaps = 22/122 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQE 58
+ P + GDFN I +
Sbjct: 156 LDAKKPVIACGDFNVAHTEIDLAHPKNNHFSAGFTDEERAGFTNLLNRGFTDTFRHIHGD 215
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ +R K+S +L+ + + LD+ + H P+ +E
Sbjct: 216 VEGVYTWWAQRVKTSKIN-NSGWRIDYWLVSDRIADKVQKSEMLDSGTRQ--DHTPILLE 272
Query: 118 YD 119
D
Sbjct: 273 ID 274
>gi|251791412|ref|YP_003006133.1| Endonuclease/exonuclease/phosphatase [Dickeya zeae Ech1591]
gi|247540033|gb|ACT08654.1| Endonuclease/exonuclease/phosphatase [Dickeya zeae Ech1591]
Length = 380
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 32/137 (23%), Gaps = 22/137 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFN-RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q E + + V+ GD N N + D ++ E
Sbjct: 242 QAERVAEIVRGYNLQQEYVVVMGDLNEDAANPWHSLTPLFSIPDLHPVIDPNLPETARYT 301
Query: 64 NVIKRNKSS-----LDYFVIDRDNKNFLIDNSFSIV-SYDQSDLDTR------------- 104
K LDY I + Y+ + +
Sbjct: 302 YYFSGGKPQERLNQLDYIFISTPLHRAKVTCGIERRGIYNIDKIAAKEGAEPVTPFPTVT 361
Query: 105 --RSKLSTHCPLTIEYD 119
+ S H + +E D
Sbjct: 362 SWDTGASDHAAVWVELD 378
>gi|169595532|ref|XP_001791190.1| hypothetical protein SNOG_00506 [Phaeosphaeria nodorum SN15]
gi|111070881|gb|EAT92001.1| hypothetical protein SNOG_00506 [Phaeosphaeria nodorum SN15]
Length = 377
Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 35/128 (27%), Gaps = 19/128 (14%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDT-----DDFWQKMDPDGLLIRFPQEKESTCN--VIKR 68
G ++AGD N ++ ++ RF + +
Sbjct: 240 LEAAGWRVLLAGDMNVAPDARDGHPKLRTFPKQHALNRADFHERFLEGTGLGGVDVWREM 299
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS------------THCPLTI 116
+ + Y R + + V + D K S HCP+ +
Sbjct: 300 HGNERRYTYYPRGREWGSSCDRVDYVVAGRGAWDAGMVKASGILDTEGERGMSDHCPVWV 359
Query: 117 EYDFEKGN 124
+ E+ +
Sbjct: 360 DVGLERRD 367
>gi|320335581|ref|YP_004172292.1| endonuclease/exonuclease/phosphatase [Deinococcus maricopensis DSM
21211]
gi|319756870|gb|ADV68627.1| Endonuclease/exonuclease/phosphatase [Deinococcus maricopensis DSM
21211]
Length = 309
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 35/120 (29%), Gaps = 19/120 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ ++ +T P V GDFN G D ++ + F Q
Sbjct: 209 DRRAAQVRAVLQVARQTRGPVVACGDFNTPP--RGLVDAALREQFSNA----FAQAGAGF 262
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + ++ ++ ++ S H PL ++ +
Sbjct: 263 GYTFPARAP-------LVRIDHVWLRRASAVAAFVPD------ARASDHRPLVVDVTLRR 309
>gi|167717617|ref|ZP_02400853.1| hypothetical protein BpseD_01281 [Burkholderia pseudomallei DM98]
Length = 114
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 18/120 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ +TG P V+AGDFN N + ++ + + +
Sbjct: 13 RQMHWIAHWIERNARTG-PLVLAGDFNDWRNDS---IPLFGEIGLSEVATLLGESGRTFP 68
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + + + LS H P +
Sbjct: 69 AFSPALALDKMFVRGMTPLEWRAPGDE--------------TAWLSDHLPYVARLRLDPA 114
>gi|317418605|emb|CBN80643.1| Deoxyribonuclease gamma [Dicentrarchus labrax]
Length = 295
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 2/98 (2%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
+I GDFN + + ++ D + T + + + V D
Sbjct: 133 NVMILGDFNADGLYVSKKEMKGIRIRSDKNFHWLIGDDVDTTASNRNDHTYDRIVVYGDD 192
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIE 117
++ NS ++ ++ + K+S H P+ +E
Sbjct: 193 MLQAVVPNSAKPFNFQKAYGLSEEQALKVSDHYPVEVE 230
>gi|113868345|ref|YP_726834.1| metal-dependent hydrolase [Ralstonia eutropha H16]
gi|113527121|emb|CAJ93466.1| Metal-dependent hydrolase [Ralstonia eutropha H16]
Length = 284
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 28/139 (20%), Gaps = 27/139 (19%)
Query: 5 QGEWLKKWADQKIKTGIP-------------------FVIAGDFNRKINSIGDTDDFWQK 45
Q E L+ W + V+ GDFN K + I
Sbjct: 150 QAEALRTWHAEACDHARRPGRSEKWPGPFTPEPRPAEAVLCGDFNSKPDDIAYRRVLEPF 209
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD----NKNFLIDNSFSIVSYDQSDL 101
D + + + I +
Sbjct: 210 DDATPPWRDAWLHTHPGQPHAPTCALYDKEQWPEPPFACDFMFVTENLAGRIRRCEVD-- 267
Query: 102 DTRRSKLSTHCPLTIEYDF 120
+ S H P+ + D
Sbjct: 268 --ADTASSDHQPILLSLDL 284
>gi|77461149|ref|YP_350656.1| endonuclease/exonuclease/phosphatase [Pseudomonas fluorescens
Pf0-1]
gi|77385152|gb|ABA76665.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
Length = 375
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 35/135 (25%), Gaps = 15/135 (11%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKI----------NSIGDTDDFWQKMDPDGL 51
L Q + K D+ G P++I GDFN + D + D
Sbjct: 243 LQAQVTAVAKVLDKHESHGTPWLIGGDFNLLPLGQYRRLPTEQRTPYSADSALHVLWDKY 302
Query: 52 LIRFPQEKEST---CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + S + + DR V ++
Sbjct: 303 PMIPTNNEASGIDRAKWLTHYPNDPGLNGPDRTVDYLFYSPKIKRVEATV--RQDDTLRI 360
Query: 109 STHCPLTIEYDFEKG 123
S H P+ ++
Sbjct: 361 SDHLPVIAKFLLPPN 375
>gi|56342183|dbj|BAD73859.1| deoxyribonuclease I [Heterodontus japonicus]
Length = 282
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 4/120 (3%)
Query: 4 QQGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D + K G +I GD N + + D ++ D +
Sbjct: 161 KEIDALYDVFFDARRKLGTDNMLIMGDLNAACSYVKPADWADIRLRKDSQFQWLIPDSAD 220
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYD 119
T I + + + KN +ID S +I ++ + L S H P+ +
Sbjct: 221 TTTNIATKCAYDRIIAVGSEMKNAVIDGSTAIYNFGKVFNLNNEMTLAVSDHYPVEVSLR 280
>gi|303389730|ref|XP_003073097.1| exodeoxyribonuclease III [Encephalitozoon intestinalis ATCC 50506]
gi|303302241|gb|ADM11737.1| exodeoxyribonuclease III [Encephalitozoon intestinalis ATCC 50506]
Length = 331
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 17/72 (23%), Gaps = 4/72 (5%)
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
ES LI + F D + S
Sbjct: 242 DTYRILHTRPESYTCWNTMLNLRPRNLG--TRIDYILIPSGFFYKLKDCDIQP--KIYGS 297
Query: 110 THCPLTIEYDFE 121
HCP+ E DF+
Sbjct: 298 DHCPVYAEMDFK 309
>gi|194334185|ref|YP_002016045.1| endonuclease/exonuclease/phosphatase [Prosthecochloris aestuarii
DSM 271]
gi|194312003|gb|ACF46398.1| Endonuclease/exonuclease/phosphatase [Prosthecochloris aestuarii
DSM 271]
Length = 325
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 16/143 (11%), Positives = 33/143 (23%), Gaps = 29/143 (20%)
Query: 4 QQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q E + D + ++AGDFN + + + ++ ++
Sbjct: 181 QAAESARAIVDSLLAQDPASNIIVAGDFNDEPDDPSIRQIL-RSINDRKKVLGPSPLYLY 239
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY----------------------DQS 99
C S Y ++ S
Sbjct: 240 NCWAQSDVPGSYHYRNRWNRLDQIMVSRSLLDGRRGLQISNSSFSCFRPEQMQEPGSGIP 299
Query: 100 DLDTRRSKL----STHCPLTIEY 118
+ + S H PL ++
Sbjct: 300 SRTWKGIRHRGGYSDHYPLLLDI 322
>gi|50414810|ref|XP_457434.1| DEHA2B11044p [Debaryomyces hansenii CBS767]
gi|49653099|emb|CAG85438.1| DEHA2B11044p [Debaryomyces hansenii]
Length = 306
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 8/96 (8%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+++GDFN + + +D C +
Sbjct: 218 LLSGDFNSQEHEEAYQTLSKSLLDTS-------CNCHERCGFKDTCTGFEKG-GSESSID 269
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
IV ++ D + S S H P+T ++
Sbjct: 270 FIWTTKGVPIVKHEIIDHECNGSYCSDHRPVTAIFE 305
>gi|21361254|ref|NP_005214.2| deoxyribonuclease-1 precursor [Homo sapiens]
gi|118919|sp|P24855|DNAS1_HUMAN RecName: Full=Deoxyribonuclease-1; AltName: Full=Deoxyribonuclease
I; Short=DNase I; AltName: INN=Dornase alfa; Flags:
Precursor
gi|181624|gb|AAA63170.1| DNase I [Homo sapiens]
gi|3273382|gb|AAC24721.1| DNaseI [Homo sapiens]
gi|10798586|emb|CAC12813.1| DNAse I [Homo sapiens]
gi|20810454|gb|AAH29437.1| Deoxyribonuclease I [Homo sapiens]
gi|67107113|gb|AAY67835.1| codon-optimized DNase I [synthetic construct]
gi|109809707|dbj|BAE96965.1| deoxyribonuclease I splicing isomer 2 [Homo sapiens]
gi|119605750|gb|EAW85344.1| deoxyribonuclease I, isoform CRA_b [Homo sapiens]
gi|123982566|gb|ABM83024.1| deoxyribonuclease I [synthetic construct]
gi|123997231|gb|ABM86217.1| deoxyribonuclease I [synthetic construct]
gi|307685305|dbj|BAJ20583.1| deoxyribonuclease I [synthetic construct]
Length = 282
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 39/116 (33%), Gaps = 5/116 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D + K G ++ GDFN + + + ++ + +
Sbjct: 165 EIDALYDVYLDVQEKWGLEDVMLMGDFNAGCSYVRPSQWSSIRLWTSPTFQWLIPDS-AD 223
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTI 116
+ + V + ++ +S ++ + + +S H P+ +
Sbjct: 224 TTATPTHCAYDRIVVAGMLLRGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEV 279
>gi|332299845|ref|YP_004441766.1| Endonuclease/exonuclease/phosphatase [Porphyromonas asaccharolytica
DSM 20707]
gi|332176908|gb|AEE12598.1| Endonuclease/exonuclease/phosphatase [Porphyromonas asaccharolytica
DSM 20707]
Length = 390
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 18/119 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q E + + D + +I GDFN S L
Sbjct: 290 AKQVEQI--YQDVNYQESPYVLICGDFNDTPISYTHHRL-------STGLHDAIATTGRG 340
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
N KS +I + L + + +S H P+ + +
Sbjct: 341 TNYSYYFKS-----LIGVRIDHMLYSDHIEARAAYVDRTAE----ISDHKPIICYFKLK 390
>gi|15823704|dbj|BAB68563.1| DNase I [Elaphe climacophora]
gi|18147011|dbj|BAB82990.1| deoxyribonuclease I [Elaphe quadrivirgata]
Length = 282
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 11/97 (11%), Positives = 33/97 (34%), Gaps = 3/97 (3%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN N + D ++ + + V + + +
Sbjct: 184 LLLGDFNADCNYVQAEDWPSIRLRSSKDFQWLIPDT-ADTTVTNTICAYDRIVAVGSKLR 242
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
++ + + ++ ++ + + L S H P+ +
Sbjct: 243 ESILPATAKVDNFQKTLKLSSKDALAVSDHFPVEVTL 279
>gi|330965675|gb|EGH65935.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. actinidiae str. M302091]
Length = 291
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 13/113 (11%), Positives = 27/113 (23%), Gaps = 22/113 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N N + + + R +
Sbjct: 186 AYIRELIGGYRHQVLMGDMNTHANDLLEHSPLRDLGLLAPQIEA--------TFPSWRPQ 237
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
LD+ ++ + +S H P+ +E
Sbjct: 238 RCLDHILLSPTLTL--------------ERVQVLAHPISDHLPVAVEIRLPAS 276
>gi|288800678|ref|ZP_06406135.1| endonuclease/exonuclease/phosphatase [Prevotella sp. oral taxon 299
str. F0039]
gi|288332139|gb|EFC70620.1| endonuclease/exonuclease/phosphatase [Prevotella sp. oral taxon 299
str. F0039]
Length = 270
Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 24/113 (21%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E L D+ + IP ++ GD N+ S + ++
Sbjct: 175 EQAEVLVS--DKVYTSSIPMILTGDMNQGPGSSVINKI---------ETAFERMDNDNGT 223
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNS-FSIVSYDQSDLDTRRSKLSTHCPLT 115
+ ++ S D +LS HCP+
Sbjct: 224 Y------------LGLSKIDFIFGSKGKWTFESCRVLDRFFNGKELSDHCPVV 264
>gi|315654117|ref|ZP_07907033.1| exodeoxyribonuclease III [Lactobacillus iners ATCC 55195]
gi|325912295|ref|ZP_08174692.1| putative exodeoxyribonuclease III [Lactobacillus iners UPII 143-D]
gi|315488813|gb|EFU78459.1| exodeoxyribonuclease III [Lactobacillus iners ATCC 55195]
gi|325475954|gb|EGC79123.1| putative exodeoxyribonuclease III [Lactobacillus iners UPII 143-D]
Length = 168
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 22/124 (17%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIRFPQE- 58
++ P + +GD+N I F + + +
Sbjct: 48 ELDQNKPVIASGDYNVAHQEIDLKHPETNHHNAGFTDEERKGFSKLLSLGFIDTFRYING 107
Query: 59 --KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ +R ++S +L+ + +DT K HCP+ +
Sbjct: 108 DITDVYSWWSQRIRTSKTN-NAGWRIDYYLVSQRLADKIEQSKMIDTGDRK--DHCPILL 164
Query: 117 EYDF 120
+ D
Sbjct: 165 KIDL 168
>gi|77410027|ref|ZP_00786588.1| exodeoxyribonuclease [Streptococcus agalactiae COH1]
gi|77171365|gb|EAO74673.1| exodeoxyribonuclease [Streptococcus agalactiae COH1]
Length = 224
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 14/142 (9%), Positives = 37/142 (26%), Gaps = 25/142 (17%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------- 49
L + + W K+A+ + + P + GD+N I + +
Sbjct: 85 LKRLADRQIWDIKYAEYLATLDSQKPVLATGDYNVAHKEIDLANPSSNRRSAGFTAEERQ 144
Query: 50 -----------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ + + + + +L N +
Sbjct: 145 GFTNLLAKGFTDTFRYLHGDVPNVYSWWAQRSRTSKINNTGWRIDYWLTSNRVADKITKS 204
Query: 99 SDLDTRRSKLSTHCPLTIEYDF 120
+ + + H P+ +E +
Sbjct: 205 EMIHSGDRQ--DHTPIILEIEL 224
>gi|260460592|ref|ZP_05808843.1| Endonuclease/exonuclease/phosphatase [Mesorhizobium opportunistum
WSM2075]
gi|259033697|gb|EEW34957.1| Endonuclease/exonuclease/phosphatase [Mesorhizobium opportunistum
WSM2075]
Length = 305
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 34/128 (26%), Gaps = 14/128 (10%)
Query: 10 KKWADQKIKTGIPF--VIAGDFNRKINSIGDTDDFWQKMDPDGLLIR----------FPQ 57
+ W + + P + GDFN + S G
Sbjct: 178 RNWTSGEAEPENPLAAIWMGDFNMEPGSAEYRRIVGSTPYHRGAAYLDGFVDAAAVASEP 237
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + ++D + +R + + F+ S H PL I+
Sbjct: 238 VLDFHTRDFHTHVKTIDGKLTNRRLDHCFVGGMFAGRVRSVGADI--GEVASDHFPLRID 295
Query: 118 YDFEKGNV 125
D E +
Sbjct: 296 IDLETPGI 303
>gi|126733500|ref|ZP_01749247.1| hypothetical protein RCCS2_05074 [Roseobacter sp. CCS2]
gi|126716366|gb|EBA13230.1| hypothetical protein RCCS2_05074 [Roseobacter sp. CCS2]
Length = 306
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 11/118 (9%), Positives = 28/118 (23%), Gaps = 15/118 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q E + + + GDFN +I + ++ P + +
Sbjct: 199 QSIELVADRIAPWMADNETLFVIGDFNGRIGDTVVNILADKGLN------FAPVQGSTFH 252
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYDF 120
+ + + ++ + H P+ +Y
Sbjct: 253 --------FNRGINLFGAIDHIASTGNAQLIGQPIVLRRKFAGEWPTDHYPVIADYRL 302
>gi|146310939|ref|YP_001176013.1| endonuclease/exonuclease/phosphatase [Enterobacter sp. 638]
gi|145317815|gb|ABP59962.1| Endonuclease/exonuclease/phosphatase [Enterobacter sp. 638]
Length = 253
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 35/119 (29%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + + KW + + G P V+AGDFN + D + R
Sbjct: 150 RQAQLNMMAKWVNA-LPEGEPVVVAGDFNDWRQ--RANHPLKAQAGLDEIFTRAH----- 201
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 202 -----GRPARTFPVSFPVLRLDRIYVKNA--HASSPTALALRTWRHLSDHAPLSAEIHL 253
>gi|320089760|pdb|3K55|A Chain A, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
gi|320089761|pdb|3K55|B Chain B, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
gi|320089762|pdb|3K55|C Chain C, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
gi|320089763|pdb|3K55|D Chain D, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
gi|320089764|pdb|3K55|E Chain E, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
gi|320089765|pdb|3K55|F Chain F, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
gi|320089766|pdb|3K55|G Chain G, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
gi|320089767|pdb|3K55|H Chain H, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
gi|320089768|pdb|3K55|I Chain I, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
gi|320089769|pdb|3K55|J Chain J, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
gi|320089770|pdb|3K55|K Chain K, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
gi|320089771|pdb|3K55|L Chain L, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
gi|320089772|pdb|3K55|M Chain M, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
gi|320089773|pdb|3K55|N Chain N, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
gi|320089774|pdb|3K55|O Chain O, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
gi|320089775|pdb|3K55|P Chain P, Structure Of Beta Hairpin Deletion Mutant Of Beta Toxin
From Staphylococcus Aureus
Length = 306
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 4/119 (3%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 186 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 245
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ +S + + +V+ ++ + S H P+
Sbjct: 246 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPK-QLVNEVVTEKPKPWNDFSDHYPIKA 303
>gi|156392379|ref|XP_001636026.1| predicted protein [Nematostella vectensis]
gi|156223125|gb|EDO43963.1| predicted protein [Nematostella vectensis]
Length = 263
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GDFN + + D+D + D + + +
Sbjct: 165 DDVIILGDFNAACDYMRDSDWRVNSLFTDQRFSWLITD-CVDTTTGGGACAYDRFVAAGA 223
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEY 118
K+ ++ NS ++D+ T ++S H P+ +E
Sbjct: 224 AMKSAVVPNSPGRFAFDKEYNLTEIVTDQVSDHYPIEMEL 263
>gi|325473616|gb|EGC76806.1| hypothetical protein HMPREF9353_02064 [Treponema denticola F0402]
Length = 209
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 16/133 (12%)
Query: 1 MLSQQ-GEWLKKWADQKIKTGIPFVIAGDFNR-KINSIGDTDDFWQKMDPDGLLIRFPQE 58
+L +Q E+L+ A + G + GD+N + + I +
Sbjct: 78 VLRKQEMEFLQNLALKLYNEGHWVIAGGDWNSLFPGVEKNRFIPYTTSAEFLEWIEYLPA 137
Query: 59 KESTCNVIKRN-----------KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
K + F+ + I+ DL +
Sbjct: 138 DFIGKEWKWGFDSSTPTVRLLEKPYVKGENYTTIIDGFICSPNVEIIGVKTGDL---NFE 194
Query: 108 LSTHCPLTIEYDF 120
+S H P+ E+
Sbjct: 195 VSDHHPIIAEFTL 207
>gi|298376208|ref|ZP_06986164.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
gi|298267245|gb|EFI08902.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
Length = 246
Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 27/107 (25%), Gaps = 20/107 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ P +I GDFN + +S + + L
Sbjct: 160 ETMKSENKPILITGDFNMEPDSKEFKTMKQTWRLLSDPTLE--------TYPSDHPRLRL 211
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
DY D + + + S H P+ I+ F
Sbjct: 212 DYIFGDLR------------HEFRIINDQVIDIQSSDHLPIYIDVLF 246
>gi|311111888|ref|YP_003983110.1| RgfB protein [Rothia dentocariosa ATCC 17931]
gi|310943382|gb|ADP39676.1| RgfB protein [Rothia dentocariosa ATCC 17931]
Length = 297
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 3/119 (2%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +Q+ L + + P ++ GDFN G+ D + + R E+
Sbjct: 160 LFAQEFARLSQALTE-CGQDAPVLMGGDFNTAAQVRGEGYDLA--LSSGLVDTREIAERT 216
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ R + + + D + ++S+ D +S H + +E D
Sbjct: 217 DGEFTVHREIAGWEGQEDAKRIDFVFADRAVKVLSHAVVFRDNSPKAISDHSGVLVELD 275
>gi|159045536|ref|YP_001534330.1| hypothetical protein Dshi_2996 [Dinoroseobacter shibae DFL 12]
gi|157913296|gb|ABV94729.1| hypothetical protein Dshi_2996 [Dinoroseobacter shibae DFL 12]
Length = 302
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 11/120 (9%), Positives = 24/120 (20%), Gaps = 15/120 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + G V+ GD N ++ S + D P +
Sbjct: 197 RLSAALVADRFAPALAAGERVVLLGDINARLGSATH------GILEDAGWTFLPVAGATY 250
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV-SYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + H P+ + E
Sbjct: 251 H--------FNRGLNLFGAIDHIALAGPMDAAGPPVVLRTRFPGEWPTDHYPVVADILLE 302
>gi|330987661|gb|EGH85764.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 380
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 36/132 (27%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFN--------RKINSIGDTDDFWQKMDPDGLLIR 54
+Q +K D+ G P++I GDFN R ++
Sbjct: 248 QKQVAATEKQLDKLESGGTPWLIGGDFNLLPLGQYQRLPEEQRLGYAADSELHELWEKYP 307
Query: 55 FPQEKESTCNVIKR-----NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + + + + DR S VS DT +S
Sbjct: 308 MIPDNAESSGIDRGKWLTHFPNDSRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--IS 365
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 366 DHLPVIGRFLLP 377
>gi|330812030|ref|YP_004356492.1| endonuclease [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327380138|gb|AEA71488.1| putative endonuclease [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 269
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 16/117 (13%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + L + + + P ++AGDFN ++ L E+
Sbjct: 169 EQLKLLCQRLSE-LPPDAPVIVAGDFND-------WRGKASELLEPCGLREVFAEQ---- 216
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + ++ S LS H PL++E +
Sbjct: 217 ---WGKPARSFPARLPILRLDRIYVRNLKAHHPKVLNV-RPWSHLSDHAPLSVEIEL 269
>gi|312884597|ref|ZP_07744301.1| hypothetical protein VIBC2010_15519 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367909|gb|EFP95457.1| hypothetical protein VIBC2010_15519 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 457
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 35/122 (28%), Gaps = 10/122 (8%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDT----------DDFWQKMDPDGLLIRFPQEKEST 62
++I + AGDFN N+ D D +
Sbjct: 333 LTKEIPQDEAVIFAGDFNIDKNNDFLEYLLMLATLEVDPPLYTGYRDATFDPRINPYAQS 392
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
LDY ++ ++K + + ++ + LS H + + F+
Sbjct: 393 QYSGGDTIEYLDYILVSSEHKRARQNINQVKLNQRVTAATWGEWHLSDHFGVEGHFVFDP 452
Query: 123 GN 124
+
Sbjct: 453 AD 454
>gi|147844534|emb|CAN79990.1| hypothetical protein VITISV_021024 [Vitis vinifera]
Length = 1226
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 17/107 (15%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD---------FWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
G P+ + GDFN ++ + F Q MD L+ Q S
Sbjct: 473 GEPWCVGGDFNIILSQGERSRQGRVTSAMRRFAQVMDELELIDLPLQG-GSFTW------ 525
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
S + F++ S+ + + +S H P+ IE
Sbjct: 526 SGGLHNQAWARLDRFMVSPSW-LDQFSNVTQKRLSRPISDHFPIIIE 571
>gi|16904254|gb|AAL30835.1|AF440398_3 DNA lyase-like protein [Mycosphaerella graminicola]
Length = 594
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 17/148 (11%), Positives = 30/148 (20%), Gaps = 39/148 (26%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQK 45
L ++ G V+ GD N + I F Q
Sbjct: 173 ALDCRIRNLMRQGKRVVLVGDLNVTRHEIDSAGHLEDIRKRNATHEDIVSGPNRRIFNQL 232
Query: 46 MDPD---------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS 90
+ R K + L+ +
Sbjct: 233 LTDGEVIGERDEGRDAGVLWDTTRGFHPTRRGMYTHWDTKKNARPGNSGSRIDFVLVADV 292
Query: 91 FSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S+ + S HCP+ ++
Sbjct: 293 MQ--SWVKDANIQEGLLGSDHCPVYADF 318
>gi|21220395|ref|NP_626174.1| large secreted protein [Streptomyces coelicolor A3(2)]
gi|256788480|ref|ZP_05526911.1| large secreted protein [Streptomyces lividans TK24]
gi|289772371|ref|ZP_06531749.1| large secreted protein [Streptomyces lividans TK24]
gi|5420017|emb|CAB46409.1| putative large secreted protein [Streptomyces coelicolor A3(2)]
gi|289702570|gb|EFD69999.1| large secreted protein [Streptomyces lividans TK24]
Length = 613
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 30/121 (24%), Gaps = 17/121 (14%)
Query: 5 QGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + + + V GD N S + E+ S
Sbjct: 503 QAKVVNTFVKEILAAQKNADVVALGDINDFEFSRTARILEGDGALWSAVKSLPRSERYSY 562
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFS---IVSYD-QSDLDTRRSKLSTHCPLTIEY 118
+ L+ S +SYD ++S H P + +
Sbjct: 563 VY-----------QGNSQVLDQILVSPSVRRGGHLSYDSVHVNAEFHDQISDHDPQVLRF 611
Query: 119 D 119
Sbjct: 612 R 612
>gi|67902602|ref|XP_681557.1| hypothetical protein AN8288.2 [Aspergillus nidulans FGSC A4]
gi|40739836|gb|EAA59026.1| hypothetical protein AN8288.2 [Aspergillus nidulans FGSC A4]
gi|259481080|tpe|CBF74285.1| TPA: SacI domain and endonuclease/exonuclease/phosphatase family
protein (AFU_orthologue; AFUA_7G03680) [Aspergillus
nidulans FGSC A4]
Length = 1106
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 30/122 (24%), Gaps = 17/122 (13%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSI----------------GDTDDFWQKMDPDGLLIRFPQ 57
++ I+ + GDFN +I D D +M + +
Sbjct: 769 NRFIEDHDAVIWLGDFNYRIGLPNQTVRDLVRQSNYQKLYDNDQLNLQMLAGRAFQFYSE 828
Query: 58 EKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ S + + QS +LS H P+
Sbjct: 829 GLVTFPPTYKYDVGSDTYDTSDKSRIPAWCDRILWKGPDLRQSGYGASDMRLSDHRPVWA 888
Query: 117 EY 118
+
Sbjct: 889 TF 890
>gi|312963318|ref|ZP_07777801.1| aminoacyl-tRNA hydrolase [Pseudomonas fluorescens WH6]
gi|311282398|gb|EFQ60996.1| aminoacyl-tRNA hydrolase [Pseudomonas fluorescens WH6]
Length = 258
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 33/118 (27%), Gaps = 18/118 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ L++ + I P V+AGDFN + GL F
Sbjct: 159 QQQLRLLEQRIRE-IPADAPLVVAGDFNDWRQRAD--------LSQSGLTEVFVHAHGKL 209
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + N + S LS H PL++E +
Sbjct: 210 ARTFP-------ARLPLLALDRIYVRNLKVHHPRVLNTRPW--SHLSDHVPLSVEVEL 258
>gi|241888987|ref|ZP_04776291.1| endonuclease/exonuclease/phosphatase family protein [Gemella
haemolysans ATCC 10379]
gi|241864236|gb|EER68614.1| endonuclease/exonuclease/phosphatase family protein [Gemella
haemolysans ATCC 10379]
Length = 354
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 43/130 (33%), Gaps = 14/130 (10%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNR---KINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q + L ++ D + K G ++ DFN+ + + + L
Sbjct: 228 KAQMKQLLEFIDYEYKKGNYVLVGADFNQSLKTLTQDEINVVPKELWRAENLDKSMLPAG 287
Query: 60 ESTCNVIKRNKSSLDYFVIDRD--------NKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ +N + L+ +D ++ ++ ++ + + + S H
Sbjct: 288 FNLLYDESKNSARLNNKPYVKDSEGTYGFIIDGYIASDNIEVLEVETLNQ---EYRYSDH 344
Query: 112 CPLTIEYDFE 121
P+ + Y +
Sbjct: 345 NPVKLRYKLK 354
>gi|242067305|ref|XP_002448929.1| hypothetical protein SORBIDRAFT_05g001745 [Sorghum bicolor]
gi|241934772|gb|EES07917.1| hypothetical protein SORBIDRAFT_05g001745 [Sorghum bicolor]
Length = 556
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 27/134 (20%), Gaps = 21/134 (15%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL--------- 52
+ + + ++I + GD N +I + + G L
Sbjct: 382 FRRLCKSSGRRIPERILDHDRVIWLGDLNYRIALSYTEAKKLVQANDWGALFQKDQLKAE 441
Query: 53 ------------IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
F R + + Q
Sbjct: 442 RESGVFRGWNEGKIFFAPTYKYSWNSDTYAGEDVASKKKRRTPAWCDRILWHGEGIVQLS 501
Query: 101 LDTRRSKLSTHCPL 114
SK S H P+
Sbjct: 502 YIRGESKFSDHRPV 515
>gi|146284370|ref|YP_001174523.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
stutzeri A1501]
gi|145572575|gb|ABP81681.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
stutzeri A1501]
gi|327482753|gb|AEA86063.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
stutzeri DSM 4166]
Length = 289
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 23/118 (19%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L + I V+ GD N N + + L + PQ + + +
Sbjct: 181 ARQL-AYIRDLIGDYRHQVLMGDMNTHANDLLENSPL------RDLGLLAPQVEATFPSW 233
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + L+ S ++ D L +S H P+ +E
Sbjct: 234 RPQR-----------CLDHILLSPSLTLERVDVLALP-----ISDHLPVAVEIRLPDS 275
>gi|89902379|ref|YP_524850.1| endonuclease/exonuclease/phosphatase [Rhodoferax ferrireducens
T118]
gi|89347116|gb|ABD71319.1| Endonuclease/exonuclease/phosphatase [Rhodoferax ferrireducens
T118]
Length = 287
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 31/116 (26%), Gaps = 14/116 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L Q I P ++AGDFN Q + + + ++
Sbjct: 186 QLHMLCDLVHQHIPASAPVIVAGDFNDWR--RRAHAVLAQGANLHEVFV------QAYGK 237
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + N+ S LS H PL +
Sbjct: 238 AARTFPA----RLPVLALDRIYVRNAIGHAPLVLPIRPW--SHLSDHAPLAATIEL 287
>gi|281491287|ref|YP_003353267.1| exodeoxyribonuclease III [Lactococcus lactis subsp. lactis KF147]
gi|281375028|gb|ADA64546.1| Exodeoxyribonuclease III [Lactococcus lactis subsp. lactis KF147]
Length = 334
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 34/127 (26%), Gaps = 23/127 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQK----MDPDGLLIRFPQEKESTCNVIK----- 67
+ P GDFN I + + + +
Sbjct: 208 LDAQKPVFACGDFNAAYTEIDLANPRANHNSAGFTDQEREKFGQLLEAGFTDTFRKLHGQ 267
Query: 68 ----RNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLS---------THCP 113
+ Y + K ++NS + Y S+ + K+S H P
Sbjct: 268 VEKFYEEGRSIYTWFAQRAKTSKLNNSGWRIDYWLVSNRLAQAVKVSEPLDSGERLDHVP 327
Query: 114 LTIEYDF 120
+ +E++
Sbjct: 328 ILLEFEL 334
>gi|254386823|ref|ZP_05002112.1| sphingomyelinase C [Streptomyces sp. Mg1]
gi|194345657|gb|EDX26623.1| sphingomyelinase C [Streptomyces sp. Mg1]
Length = 334
Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 30/129 (23%), Gaps = 14/129 (10%)
Query: 1 MLSQQGEWLKKWAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ-- 57
M ++Q + + + D + I ++AGD N +
Sbjct: 204 MRARQFKAIDAFLDGKNIPASEQVIVAGDMNVDSRTPEYASMLANADLAGSDTRTGHPYS 263
Query: 58 -EKESTCNVIKRNKSSLDY--------FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK- 107
+ R + R + S T +
Sbjct: 264 FDTALNSIANYRYPTDPREDLDYVLYRKGNARPANWENNVVKEQSAPWTVSSWGTSYTYT 323
Query: 108 -LSTHCPLT 115
LS H PL
Sbjct: 324 NLSDHYPLI 332
>gi|329925648|ref|ZP_08280466.1| endonuclease/exonuclease/phosphatase family protein [Paenibacillus
sp. HGF5]
gi|328939675|gb|EGG36018.1| endonuclease/exonuclease/phosphatase family protein [Paenibacillus
sp. HGF5]
Length = 272
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 37/119 (31%), Gaps = 23/119 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE-KESTC 63
Q + + A + P ++ GD N + +S ++ + GL + + ++
Sbjct: 176 QAQEIIDLAS---GSQGPALLLGDLNAEPDSSE-----FRLLLDSGLFVNSFEGIDDAYT 227
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
L + + +++ S H P+ + F++
Sbjct: 228 FP---------VINPSATIDYILTSPNVRHANQRVI-----QTEASDHLPIAADVVFKR 272
>gi|320538511|ref|ZP_08038372.1| endonuclease/exonuclease/phosphatase family protein [Treponema
phagedenis F0421]
gi|320144618|gb|EFW36373.1| endonuclease/exonuclease/phosphatase family protein [Treponema
phagedenis F0421]
Length = 353
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 37/132 (28%), Gaps = 14/132 (10%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPF--VIAGDFNRKINSIGDTDDFWQKMDPDGLLI-RFPQ 57
+ Q + + + + KT VI GDFN+ + + + L
Sbjct: 215 IRRMQEKQVFQKIQELKKTNPDIHYVICGDFNQPLEEFDLLTELPNSWNRCEYLRALSVN 274
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ K N ++D+ + + + L T K
Sbjct: 275 AQPGGSFCYKGNWQAIDHIFYSENLSDNKGLDIEHFAVIAIPPLITSAGKPNAYSVFSGK 334
Query: 109 --STHCPLTIEY 118
S H P+ +
Sbjct: 335 GYSDHLPIGVRL 346
>gi|295132909|ref|YP_003583585.1| hypothetical protein ZPR_1044 [Zunongwangia profunda SM-A87]
gi|294980924|gb|ADF51389.1| probable secreted protein [Zunongwangia profunda SM-A87]
Length = 282
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 33/114 (28%), Gaps = 22/114 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q ++K P +I GDFN S + + +
Sbjct: 187 QVSAIRKILS---SEDKPVIITGDFNVVPESSSMNHLL-------EIFSSSCTDVCDFTS 236
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++++S++DY + + + L S H P+ +
Sbjct: 237 SAQQSESTIDYILYKSNTIDVLEHKVLKET------------FASDHFPVKARF 278
>gi|269861776|ref|XP_002650574.1| exodeoxyribonuclease III [Enterocytozoon bieneusi H348]
gi|269867018|ref|XP_002652463.1| exodeoxyribonuclease III [Enterocytozoon bieneusi H348]
gi|220062443|gb|EED41593.1| exodeoxyribonuclease III [Enterocytozoon bieneusi H348]
gi|220065939|gb|EED43484.1| exodeoxyribonuclease III [Enterocytozoon bieneusi H348]
Length = 151
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 22/96 (22%), Gaps = 5/96 (5%)
Query: 28 DFNRKINSIGDTDDFWQKM-DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFL 86
D M +E + + D
Sbjct: 32 DLYDHFMEKRQRQWLANLMKTFVDTFRIGNKELFQYTCWDRVLRHRESNLGTRIDYILLK 91
Query: 87 IDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + I S + S HCP+T+E D +
Sbjct: 92 TTSHYKIKSAEI----RPDIYGSDHCPVTLEIDIGE 123
>gi|169116575|gb|ACA42592.1| Mpc [Enterobacter sp. Ceibso-001]
Length = 253
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 34/116 (29%), Gaps = 15/116 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L W + + G P V+AGDFN + + L +E
Sbjct: 153 QLQMLADWTNA-LPEGEPVVVAGDFNDW------------RQRANHPLKVKAGLEEIFTR 199
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 200 SRGRPARTFPVRFPLLRLDRIYVKNA--HASSPTALALLNWRHLSDHAPLSAEIHL 253
>gi|260591557|ref|ZP_05857015.1| endonuclease/Exonuclease/phosphatase family protein [Prevotella
veroralis F0319]
gi|260536588|gb|EEX19205.1| endonuclease/Exonuclease/phosphatase family protein [Prevotella
veroralis F0319]
Length = 326
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 37/117 (31%), Gaps = 15/117 (12%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
Q+ + ++ GDFN +S +++ + + SLD
Sbjct: 207 QRRHSDAKVIVMGDFNDYADSPSLK-PLYKRNLLNVSAQAKGKNGAKGTYRYHGEWGSLD 265
Query: 75 YFVIDRDNKNFLIDNSFSIVSY--------------DQSDLDTRRSKLSTHCPLTIE 117
+I + +++++ + + + + S H PL ++
Sbjct: 266 QILISENLRSYVLSCHINDAPFLLEEDIKYGGVKPRRDYNGMRYNNGFSDHLPLVLQ 322
>gi|309804045|ref|ZP_07698126.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
11V1-d]
gi|309804894|ref|ZP_07698956.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
09V1-c]
gi|309807812|ref|ZP_07701744.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
01V1-a]
gi|309809734|ref|ZP_07703588.1| putative exodeoxyribonuclease III [Lactobacillus iners SPIN
2503V10-D]
gi|308163813|gb|EFO66079.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
11V1-d]
gi|308165833|gb|EFO68054.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
09V1-c]
gi|308168914|gb|EFO71000.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
01V1-a]
gi|308169913|gb|EFO71952.1| putative exodeoxyribonuclease III [Lactobacillus iners SPIN
2503V10-D]
Length = 168
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDGLLIRFPQE 58
K+ P + +GD+N I F + + +
Sbjct: 47 AKLDQNKPVIASGDYNVAHQEIDLKHPETNHHNAGFTDEERKGFSKLLSLGFIDTFRYIN 106
Query: 59 ---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ +R ++S +L+ + +DT K HCP+
Sbjct: 107 GDITDVYSWWSQRIRTSKTN-NAGWRIDYYLVSQRLADKIEQSKMIDTGDRK--DHCPIL 163
Query: 116 IEYDF 120
++ D
Sbjct: 164 LKIDL 168
>gi|193216274|ref|YP_001997473.1| endonuclease/exonuclease/phosphatase [Chloroherpeton thalassium
ATCC 35110]
gi|193089751|gb|ACF15026.1| Endonuclease/exonuclease/phosphatase [Chloroherpeton thalassium
ATCC 35110]
Length = 290
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 28/133 (21%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKI--------------NSIGDTDDFWQKMDP 48
++Q + + + G P + GD N D ++
Sbjct: 171 ARQVRSIAEEVRKL--NGAPVLFMGDLNTVPPGCRVNGFPAGARDEFSYKNDKTFEIFSE 228
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
GL + + + + L L + + +V+Y + K
Sbjct: 229 VGLSMVPHADADEF----YTYPTGLPNR----TLDYVLFSDHWEVVNYHV----VKEFKF 276
Query: 109 STHCPLTIEYDFE 121
S H P+ E+ +
Sbjct: 277 SDHYPVFGEFRLK 289
>gi|126342732|ref|XP_001367276.1| PREDICTED: similar to APEX nuclease (apurinic/apyrimidinic
endonuclease) 2 [Monodelphis domestica]
Length = 482
Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 32/136 (23%), Gaps = 26/136 (19%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIG----------------------DTDDFWQ 44
L+ A+ ++ G +I GD N +
Sbjct: 162 RLLQLRAEALLQAGSHVIILGDVNTSHRPLDHCDPADLECFEENPGRQWLTEFLWQPDRD 221
Query: 45 KMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
F + + L + L D + + ++ S L
Sbjct: 222 SGLFVDSFRHFHPTTVGAFTCWSTATGARLTNYG--TRLDYILGDRALVLEEFEDSFLMP 279
Query: 104 RRSKLSTHCPLTIEYD 119
+ S HCP+
Sbjct: 280 -EVEGSDHCPIGATLR 294
>gi|302383754|ref|YP_003819577.1| endonuclease/exonuclease/phosphatase [Brevundimonas subvibrioides
ATCC 15264]
gi|302194382|gb|ADL01954.1| Endonuclease/exonuclease/phosphatase [Brevundimonas subvibrioides
ATCC 15264]
Length = 319
Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 24/114 (21%), Gaps = 21/114 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L W + P + AGDFN + +
Sbjct: 218 QARGLANW---RKAYSGPMIFAGDFNSVSS--------ARIGRQIQAETGLIPAPGWPGT 266
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S +++ D R S H P+ +
Sbjct: 267 WHSAMPSPA-----AMTIDQVYRSPDLALL-----DRRLGRGNGSDHRPVITRF 310
>gi|116695510|ref|YP_841086.1| metal-dependent hydrolase [Ralstonia eutropha H16]
gi|113530009|emb|CAJ96356.1| Metal-dependent hydrolase [Ralstonia eutropha H16]
Length = 243
Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 29/117 (24%), Gaps = 21/117 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + L + +P ++ GD N + F L F +
Sbjct: 133 RRQVQQLLNYVAA--APPLPTILLGDVN---------EWFLWGRPLRWLHAYFEHAPHTA 181
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + +VS R S H PL ++
Sbjct: 182 TFPSR---------WPVFALDRIWVSPRAHLVSVASHRSPLARV-ASDHLPLLARFE 228
>gi|305666984|ref|YP_003863271.1| putative secreted protein [Maribacter sp. HTCC2170]
gi|88709217|gb|EAR01451.1| probable secreted protein [Maribacter sp. HTCC2170]
Length = 258
Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 32/117 (27%), Gaps = 20/117 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + T P ++ GD N NS + + Q +
Sbjct: 161 QAKAINE---ALGSTKYPTLLVGDLNDGPNSETIR------ILSENFHKPQLQAAKKKTW 211
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
D + D+ + ++ Y+ + S HC + F
Sbjct: 212 P-------ADEPKVCLDHILLTNPKKWKVIDYEVI----CENYASDHCIVVATLVFN 257
>gi|325529413|gb|EGD06334.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. TJI49]
Length = 269
Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 17/141 (12%), Positives = 33/141 (23%), Gaps = 29/141 (20%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRK-INSIGDTDD--------------------- 41
+Q E + +I GDFN + D
Sbjct: 130 RQAEA--AYLTALAAPDALTLIGGDFNSASPHDPEPADWGGLAPHHRARYLAEDLSGIDR 187
Query: 42 -FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQ 98
++D GL+ + S + + + Y+
Sbjct: 188 SVIARLDAAGLVDLGRRLHGSGIPTVP-AAGYREAEFATMRCDYLFASKALVERARRYEV 246
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
+ S H P+ ++ D
Sbjct: 247 LRTPE-TERASDHYPVLLQLD 266
>gi|269865638|ref|XP_002651994.1| exodeoxyribonuclease III [Enterocytozoon bieneusi H348]
gi|220063354|gb|EED42062.1| exodeoxyribonuclease III [Enterocytozoon bieneusi H348]
Length = 151
Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 22/96 (22%), Gaps = 5/96 (5%)
Query: 28 DFNRKINSIGDTDDFWQKM-DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFL 86
D M +E + + D
Sbjct: 32 DLYDHFMEKRQRQWLANLMKTFVDTFRVGNKELFQYTCWDRVLRHRESNLGTRIDYILLK 91
Query: 87 IDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + I S + S HCP+T+E D +
Sbjct: 92 TTSHYKIKSAEI----RPDIYGSDHCPVTLEIDIGE 123
>gi|26986873|ref|NP_742298.1| endonuclease/exonuclease/phosphatase [Pseudomonas putida KT2440]
gi|148545402|ref|YP_001265504.1| endonuclease/exonuclease/phosphatase [Pseudomonas putida F1]
gi|24981475|gb|AAN65762.1|AE016202_5 conserved hypothetical protein [Pseudomonas putida KT2440]
gi|148509460|gb|ABQ76320.1| Endonuclease/exonuclease/phosphatase [Pseudomonas putida F1]
Length = 284
Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 14/112 (12%), Positives = 33/112 (29%), Gaps = 22/112 (19%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ + I V+ GD N + + L + PQ + + + +
Sbjct: 185 YIRELIGGYRHQVLMGDMNTHATDLLEHSPL------RDLGLVAPQVEATFPSWRPQR-- 236
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+ +S ++ + +S H P+ +E
Sbjct: 237 ---------CLDHILLSSSLTLERVEVLAQP-----ISDHLPVAVEIRLPDA 274
>gi|314950241|ref|ZP_07853524.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium TX0082]
gi|313643380|gb|EFS07960.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium TX0082]
Length = 284
Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 2/106 (1%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
++T +P GDFN ++S G + + ++ ++ V K+
Sbjct: 181 LETRVPLFFLGDFNNPVDSQGYYTVRESCLLLQDSYVVANEKGKAAT-VEKKIDGWEQNT 239
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + Y + +S H + IE D +
Sbjct: 240 -EKLRIDFIFVPEGMQVKKYQRIFDGIDSPIISDHYGVEIELDVNE 284
>gi|125381322|gb|ABN41561.1| deoxyribonuclease I-like 2 [Gallus gallus]
Length = 237
Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
V GDFN + + +D ++ + + + V K + + V
Sbjct: 137 DNIVFLGDFNADCSYVKQSDWASIRLRSSDVFKWLIPDS-ADTTVGKSDCAYDRIVVCGA 195
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
K ++ NS ++ ++ ++ + L S H P+ ++
Sbjct: 196 KLKRSIVPNSATVYNFQRAFQLEQEEALAVSDHYPVEVKL 235
>gi|94987973|ref|YP_596074.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS9429]
gi|94991856|ref|YP_599955.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS2096]
gi|94541481|gb|ABF31530.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS9429]
gi|94545364|gb|ABF35411.1| Exodeoxyribonuclease III [Streptococcus pyogenes MGAS2096]
Length = 303
Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 38/143 (26%), Gaps = 33/143 (23%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQK 45
+Q W K+AD ++ P + GD+N I + +
Sbjct: 169 DRQI-WDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPSSNRRSPGFTDEERQGFTN 227
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N +
Sbjct: 228 LLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKIN-NTGWRIDYWLASNRL------VDKV 280
Query: 102 DTRRSKLS----THCPLTIEYDF 120
S H P+ ++ D
Sbjct: 281 KRSEMISSGERQDHTPILLDIDL 303
>gi|289549377|ref|YP_003470281.1| beta-hemolysin [Staphylococcus lugdunensis HKU09-01]
gi|289178909|gb|ADC86154.1| beta-hemolysin [Staphylococcus lugdunensis HKU09-01]
Length = 328
Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 32/130 (24%), Gaps = 14/130 (10%)
Query: 1 MLSQQGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDT---DDFWQKMDPDGLLIRFP 56
+ Q E +K++ D+ I P I GD N S D+ M +
Sbjct: 195 IRQSQMEEIKQFIKDKNIPKDEPVYIGGDLNVIKGSAEYQKMSDNLNVSMPKQYEGNAYS 254
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------- 108
+ ++ + S + K
Sbjct: 255 WDTQTNGIANYNYPKLEPQHLDYILLDRDHAQPSSWHNHTHKVKSPEWSVKSWGKTYRYN 314
Query: 109 --STHCPLTI 116
S H P++
Sbjct: 315 DYSDHYPVSA 324
>gi|281206753|gb|EFA80938.1| hypothetical protein PPL_06173 [Polysphondylium pallidum PN500]
Length = 2081
Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats.
Identities = 13/126 (10%), Positives = 28/126 (22%), Gaps = 27/126 (21%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQ--E 58
++ P + GD N I + + G + F
Sbjct: 1397 ELNKKKPVIWTGDLNVAHKEIDLKNPKGNVRTAGFTVEERTSFSGFLESGFVDTFRHFNP 1456
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST-------H 111
K+ + F++ +F + + S H
Sbjct: 1457 KKEFQYTFWSYMRNSRASNAGWRLDYFIVPLTF--IGSVAHSFIRSKVTGSDCLFIRYTH 1514
Query: 112 -CPLTI 116
P+ +
Sbjct: 1515 SYPIIL 1520
>gi|260776998|ref|ZP_05885892.1| putative phospholipase C [Vibrio coralliilyticus ATCC BAA-450]
gi|260606664|gb|EEX32938.1| putative phospholipase C [Vibrio coralliilyticus ATCC BAA-450]
Length = 441
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 41/125 (32%), Gaps = 11/125 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + +++ A I + V +GDFN GD + E
Sbjct: 314 QRQFKQIRELATLLNIPSNETVVYSGDFNVNKRKFPGDYQQMIANLSAIEPQYSGYTEST 373
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ ++ ++ + +++ +++ + +D + LS H
Sbjct: 374 FDPRINDFAGEAMSGGENVEYLDYVMVSDEYAVKAFNDNRVDVPRSTDERLWKHYNLSDH 433
Query: 112 CPLTI 116
P++
Sbjct: 434 FPVSA 438
>gi|254494845|ref|ZP_01051882.2| endonuclease/exonuclease/phosphatase family protein [Polaribacter
sp. MED152]
gi|213690427|gb|EAQ41310.2| endonuclease/exonuclease/phosphatase family protein [Polaribacter
sp. MED152]
Length = 333
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 34/119 (28%), Gaps = 19/119 (15%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q E +++ + +++GDFN + ++ + K
Sbjct: 234 FKKQAEQTEEFLLHEANWKGKKIVSGDFN-----NTAYSWVYNQISNNKKDAYIEAGKGF 288
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+D+ + D + + + K S H P+ ++
Sbjct: 289 GKTYNYAFPLRIDFILTDENAI--------------INQFTSFNEKNSDHFPIQARINW 333
>gi|126735526|ref|ZP_01751271.1| Endonuclease/exonuclease/phosphatase [Roseobacter sp. CCS2]
gi|126714713|gb|EBA11579.1| Endonuclease/exonuclease/phosphatase [Roseobacter sp. CCS2]
Length = 326
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 16/104 (15%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
P + GDFN ++ G + + DY +
Sbjct: 232 DRPTICMGDFNDVS-----WSWTTKRFKEYGNFREPRIGRGMISSFH------ADYPFMR 280
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + +VS+ + S H P+ ++
Sbjct: 281 LPIDQLFVTENVGLVSF-----ARLENFGSDHFPMIATIFLKED 319
>gi|328886463|emb|CCA59702.1| Sphingomyelinase C precursor [Streptomyces venezuelae ATCC 10712]
Length = 346
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 32/138 (23%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDD------------------ 41
M S+Q + + + D K I G ++AGD N +
Sbjct: 216 MRSRQFKAIDAFLDAKNIPAGEQVIVAGDMNVDSRTPEYGTMLADAGLAAADARTGHPYS 275
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKR----NKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
F +++ +E V+ R ++ V+ + + + + +Y
Sbjct: 276 FDTELNSIASERYPDDPREDLDYVLYRAGNARPANWTNNVVLEKSAPWTVSSWGKSYTY- 334
Query: 98 QSDLDTRRSKLSTHCPLT 115
+ LS H P+T
Sbjct: 335 --------TNLSDHYPVT 344
>gi|313496499|gb|ADR57865.1| Endonuclease/exonuclease/phosphatase [Pseudomonas putida BIRD-1]
Length = 284
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 14/112 (12%), Positives = 33/112 (29%), Gaps = 22/112 (19%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ + I V+ GD N + + L + PQ + + + +
Sbjct: 185 YIRELIGGYRHQVLMGDMNTHATDLLEHSPL------RDLGLVAPQVEATFPSWRPQR-- 236
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+ +S ++ + +S H P+ +E
Sbjct: 237 ---------CLDHILLSSSLTLERVEVLAQP-----ISDHLPVAVEIRLPDA 274
>gi|312881993|ref|ZP_07741747.1| endonuclease/exonuclease/phosphatase [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309370288|gb|EFP97786.1| endonuclease/exonuclease/phosphatase [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 301
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 14/149 (9%), Positives = 32/149 (21%), Gaps = 33/149 (22%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIG---------------------DTDD 41
+ L ++ +I GDFN +
Sbjct: 149 KLAAQGLYDAVRDMMRNDEHIIIMGDFNASPYDSVMLEELNATRCHEAVRRHPTELFYNP 208
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNK---SSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
FW+ + + ++ + R + + + S ++
Sbjct: 209 FWRALPSKEVYNYTMRDTPHFPSGSHRYQDPCGQYWHTFDQMVFSGNFLGPSEWHLNEST 268
Query: 99 SDLDTRRSKLS---------THCPLTIEY 118
+ S H P+ E
Sbjct: 269 TRTLFDEPLESSILDNKSIIDHLPVVCEI 297
>gi|307609276|emb|CBW98745.1| hypothetical protein LPW_05491 [Legionella pneumophila 130b]
Length = 251
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 14/117 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + L + + P ++AGDFN + + + + + + +
Sbjct: 148 EQCKALIQRIKDVVPKNEPLIMAGDFNDWRH--VISKILAENLGIEEAFVALEGQHA--- 202
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R+ ++ + + V+ Q LS H PL ++
Sbjct: 203 ----RSFPAIKPALCVDRVYFRGMK--VQEVACLQGKPWR---MLSDHLPLYARFEL 250
>gi|83718570|ref|YP_440771.1| hypothetical protein BTH_I0213 [Burkholderia thailandensis E264]
gi|83652395|gb|ABC36458.1| conserved hypothetical protein [Burkholderia thailandensis E264]
Length = 230
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ G P V+AGDFN N + ++ + + +
Sbjct: 129 RQMHWIAHWIERNAGAG-PLVLAGDFNDWRNDS---IPLFGEIGLSEVATLLGESGRTFP 184
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + LS H P +
Sbjct: 185 AFSPALALDKMFVRGMTPLEWRAPGDE--------------TAWLSDHLPYVARLRLD 228
>gi|325180868|emb|CCA15278.1| DNA(apurinic or apyrimidinic site) lyase putative [Albugo laibachii
Nc14]
Length = 475
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 19/148 (12%), Positives = 33/148 (22%), Gaps = 36/148 (24%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------ 48
E L + K V+ GD N I + +
Sbjct: 158 ELLTRRIQTLRKASKRVVLVGDLNVASKRIDHCEPKASEFGEFEAHPCRKWLHRLISSPA 217
Query: 49 --DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS-----IVSYDQSDL 101
+ + +K+ + L+D S+ +
Sbjct: 218 PLRDIYRKLYPDKKKAFTC-WNTATMARKNNYGTRIDYILVDEKLQDSVLSCRSFAFKSI 276
Query: 102 DTRRSKL----------STHCPLTIEYD 119
+ L S HCP+ E D
Sbjct: 277 LEKWLTLAIRLDPERLGSDHCPVFAEID 304
>gi|330792503|ref|XP_003284328.1| hypothetical protein DICPUDRAFT_75271 [Dictyostelium purpureum]
gi|325085781|gb|EGC39182.1| hypothetical protein DICPUDRAFT_75271 [Dictyostelium purpureum]
Length = 294
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 34/128 (26%), Gaps = 22/128 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD-----------------PDGLLIRFPQ 57
+K IP V+ GDFN + +D F
Sbjct: 166 ATLKPQIPLVLVGDFNSNEYQKPIINIVSSSIDIIKSKKYLELLEIPLRDDILFQTLFNA 225
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-----SDLDTRRSKLSTHC 112
+ C + + + + I+ F S+ S + + S H
Sbjct: 226 RNVANCKIGPDHTFTGFNGQFTENIDYIFINQQFKTTSFIVFNNHPSKITKSSTIASDHF 285
Query: 113 PLTIEYDF 120
P+ + F
Sbjct: 286 PIIADLQF 293
>gi|269960777|ref|ZP_06175148.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834441|gb|EEZ88529.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 442
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 11/125 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I T V +GDFN + GD +
Sbjct: 314 QRQFKQMRTMAQSLNIPTNETVVYSGDFNVNKLKFPGDYQQMIANLSAIEPQYSGYTAST 373
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ +L ++ N + + S++ + +D + LS H
Sbjct: 374 FDPRINNFAGEALSGGENVEYLDYVMVSNEYGVKSFNDNRVDVPRSTAGSLWKHYNLSDH 433
Query: 112 CPLTI 116
P++
Sbjct: 434 FPVSA 438
>gi|241166987|ref|XP_002409964.1| conserved hypothetical protein [Ixodes scapularis]
gi|215494698|gb|EEC04339.1| conserved hypothetical protein [Ixodes scapularis]
Length = 437
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 29/125 (23%), Gaps = 5/125 (4%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR---FPQEKES 61
Q + ++ +T ++AGDFN + D
Sbjct: 150 QAFEMSQYVKLTSETCDLAIVAGDFNTEPLDPPYNIILHNTCLEDAFDSLCVGATCGHPD 209
Query: 62 TCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD-TRRSKLSTHCPLTIEYD 119
+ ID + L T LS H P+ +
Sbjct: 210 NHYTSAYDKHTCPTGKRIDYVMFKVGRGVVANCKVCKNPRLKTTSGLPLSDHEPVEVVMR 269
Query: 120 FEKGN 124
K +
Sbjct: 270 VTKSS 274
>gi|150025222|ref|YP_001296048.1| hypothetical protein FP1150 [Flavobacterium psychrophilum JIP02/86]
gi|149771763|emb|CAL43237.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 348
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 32/122 (26%), Gaps = 21/122 (17%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + + + K P +I GD N S + F Q +
Sbjct: 246 FKKQQQQGEIIMNHKKSCKYPIIICGDMNNSAFSYVYRSIK------GNMQDCFEQAGKG 299
Query: 62 T--CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
K + +DY + + N V+ S H P+
Sbjct: 300 FGQTYSFKYYPARIDYIFANSKMRVKNFTNFPDFVN-------------SDHLPIMTRLS 346
Query: 120 FE 121
+
Sbjct: 347 VD 348
>gi|53803236|ref|YP_115006.1| endonuclease/exonuclease/phosphatase family protein [Methylococcus
capsulatus str. Bath]
gi|53756997|gb|AAU91288.1| endonuclease/exonuclease/phosphatase family protein [Methylococcus
capsulatus str. Bath]
Length = 282
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 21/113 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
++ I V+ GD N + N+ + L ++ +
Sbjct: 180 RFISDLIGHLPYVVMMGDLNCEPNTPE-----LDLLLDATHLNDPVCRLKTFPSWRP--- 231
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + L+ S + + D S H P+++E
Sbjct: 232 --------HKMLDHILVTPSLRVNRLEVIDFAC-----SDHLPVSMEVVLPDA 271
>gi|322411221|gb|EFY02129.1| exodeoxyribonuclease III [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 275
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 33/130 (25%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIR 54
+ + + P + GD+N I + + + G
Sbjct: 150 ADYLAE-LDAQKPVLATGDYNVAHKEIDLANPGSNRRSPGFTDEERQGFTNLLAKGFTDT 208
Query: 55 FPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F +R+K+S +L N + + +
Sbjct: 209 FRHLHGDIPNVYTWWAQRSKTSKIN-NTGWRIDYWLTSNRLVDKINRSEMISSGERQ--D 265
Query: 111 HCPLTIEYDF 120
H P+ ++ D
Sbjct: 266 HTPILLDIDL 275
>gi|319638482|ref|ZP_07993244.1| endonuclease/exonuclease/phosphatase [Neisseria mucosa C102]
gi|317400231|gb|EFV80890.1| endonuclease/exonuclease/phosphatase [Neisseria mucosa C102]
Length = 261
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 14/114 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + + D+ I P +IAGDFN W++ L +
Sbjct: 147 KQYRAISDYVDRHINPDSPLIIAGDFND-----------WRQKSARELGRALDLNEVFVD 195
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
N KR K+ + + + + + ++ + + LS H PL++
Sbjct: 196 NTGKRPKTF--PSRLPILSLDRIYTRNLDVIDSEIHNSK-DWQHLSDHLPLSVT 246
>gi|306836858|ref|ZP_07469815.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49726]
gi|304567265|gb|EFM42873.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49726]
Length = 443
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 35/134 (26%), Gaps = 20/134 (14%)
Query: 5 QGEW-LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + L Q P GDFN + DG + + T
Sbjct: 233 QAQAVLDALHKQDDWKDKPLFTLGDFNTY-----THETALDVFRNDGFTVPAEKYGADTS 287
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD--------------QSDLDTRRSKLS 109
+LD+ + + L D ++ D D + S
Sbjct: 288 YQFDGLLGTLDHVLANEVASGALDDAQVWNINADEPVAFEYSRRNYNAVDFYDDSPFRAS 347
Query: 110 THCPLTIEYDFEKG 123
H P+ + + +
Sbjct: 348 DHDPVKVGFTLGED 361
>gi|145355640|ref|XP_001422066.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582305|gb|ABP00360.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 304
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 10/107 (9%)
Query: 17 IKTGIPF--VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
G P +I GDFN S + NV + +D
Sbjct: 206 RAEGRPVHVIIGGDFNSDPQS-DVYGAMNAAFTSVSNGR-----EPQFTNVTPSFTACID 259
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
Y + + +D + + + +T S H P+ + +F+
Sbjct: 260 YVFLSSGVRVVAVDEQPARDTLGEGLPNTG--HPSDHLPVAAKIEFD 304
>gi|124441686|gb|ABN11482.1| DNA lyase [Ascosphaera apis]
Length = 533
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 27/127 (21%), Gaps = 12/127 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGD--FNRKINSIGDTDDF----WQKMDPDGLLIRFPQE 58
L +++ FN + D D + + F
Sbjct: 156 SASALADVLGERLSREQYISTPSRALFNELVTDSSDYDSSEPNNNAQCVLWDICRDFHPS 215
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ K++ L + S HCP+
Sbjct: 216 RKGMFTC-WDMKTNARPGNFGSRIDYILCSLNIRDWFVAADAQQ--HLMGSDHCPVFAVL 272
Query: 119 DFEKGNV 125
K N+
Sbjct: 273 ---KENI 276
>gi|13476402|ref|NP_107972.1| hypothetical protein mll7713 [Mesorhizobium loti MAFF303099]
gi|14027163|dbj|BAB54117.1| mll7713 [Mesorhizobium loti MAFF303099]
Length = 358
Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 29/122 (23%), Gaps = 13/122 (10%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + A G ++AGD N S +
Sbjct: 228 KEQYWQIGELAQTLAGLGQTAIMAGDCNAVPWSAAVRRVAALGGLTLM--------PSAG 279
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
I R + +I+S S H P+ +E+
Sbjct: 280 PTWIHRTLPDVLRRYAGLPIDQVFSKGGLTILSSQ-----RLEDTGSDHLPVLVEFTLRS 334
Query: 123 GN 124
+
Sbjct: 335 DD 336
>gi|255085134|ref|XP_002504998.1| predicted protein [Micromonas sp. RCC299]
gi|226520267|gb|ACO66256.1| predicted protein [Micromonas sp. RCC299]
Length = 329
Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 38/153 (24%), Gaps = 35/153 (22%)
Query: 5 QGEWL--------KKWADQKIKTGIP------FVIAGDFNRKINS------------IGD 38
Q WL ++W + + G V+ GDFN + GD
Sbjct: 177 QARWLLRHADGLRRRWVEADNEAGRGGGKEVGLVVCGDFNGEPFDGVIRFVRESVLGAGD 236
Query: 39 TDDFWQKMDPDGLLIRFPQ--------EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS 90
D + G + N + SLDY D +
Sbjct: 237 GDWALGSVFRWGAAMHLRHPLALVSACGYPEFTNYVGGFAGSLDYVWFDSSALESVASMP 296
Query: 91 FSIVSYDQ-SDLDTRRSKLSTHCPLTIEYDFEK 122
+ S H P+ + F +
Sbjct: 297 MPPLDAVTAETALPNSEFPSDHLPMVADLRFTR 329
>gi|71004198|ref|XP_756765.1| hypothetical protein UM00618.1 [Ustilago maydis 521]
gi|46095654|gb|EAK80887.1| hypothetical protein UM00618.1 [Ustilago maydis 521]
Length = 663
Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 25/133 (18%), Gaps = 25/133 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC----- 63
L + A + I+ G +I GD N + I D + +
Sbjct: 172 LAERAHRLIQEGRQVMIVGDMNIIRDPIDHCDAEQSIKEHGWDDFHQHPARSWFQSFLAP 231
Query: 64 ------------------NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
L
Sbjct: 232 HGKFHDVGRMYHADRKKMFTCWNTLIDARPANYGVRLDYTLATEGILPWIKGADIQA--D 289
Query: 106 SKLSTHCPLTIEY 118
S HCP+ I+
Sbjct: 290 VYGSDHCPIYIDL 302
>gi|325685174|gb|EGD27297.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 275
Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIR 54
+ + ++ + P + +GDFN I + ++ G
Sbjct: 150 RAYLEE-LDKKKPVLASGDFNAAYQEIDLKHPENNHHSAGFTDEERAGFGQLLAAGFTDT 208
Query: 55 FPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q +R +++ +L+ N + ++S++ +
Sbjct: 209 FRQIHGQVEGVYSWWAQRVRTAKAN-NSGWRIDYWLVSNRLA-DQVEKSEMIETGERA-D 265
Query: 111 HCPLTIEYDF 120
HCP+ +E
Sbjct: 266 HCPILLEIKL 275
>gi|296535528|ref|ZP_06897711.1| endonuclease/exonuclease/phosphatase [Roseomonas cervicalis ATCC
49957]
gi|296264141|gb|EFH10583.1| endonuclease/exonuclease/phosphatase [Roseomonas cervicalis ATCC
49957]
Length = 264
Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 22/115 (19%), Gaps = 24/115 (20%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ + P V+ GDFN + FP
Sbjct: 135 QQARRMAALVRGM---PGPVVVMGDFNDWSWGGPVWRALAPLLPARTRHRTFPA------ 185
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + S H P+ E
Sbjct: 186 ------------RLPLLRLDEIFCRPAQLLGRSWVD---RDAAIASDHLPVLAEL 225
>gi|311895579|dbj|BAJ27987.1| hypothetical protein KSE_21650 [Kitasatospora setae KM-6054]
Length = 252
Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 20/123 (16%)
Query: 6 GEWLKKW--ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
E L+++ +++ G P VIAGDFN + G ++
Sbjct: 141 AERLRQFDLLRGQLRPGEPGVIAGDFNEGPDGPG-WRSLAAELTDAHAKA---------- 189
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-----LDTRRSKLSTHCPLTIEY 118
S + + ++ + + H P+
Sbjct: 190 PWGGTYTSVPEEPY--QRIDGVFATPDVEVLGCGVPYPLPGVAEADLRAATDHLPVLAAL 247
Query: 119 DFE 121
Sbjct: 248 RIP 250
>gi|293568433|ref|ZP_06679753.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium E1071]
gi|291588769|gb|EFF20597.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium E1071]
Length = 277
Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 2/106 (1%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
++T +P GDFN ++S G + + ++ ++ V K+
Sbjct: 174 LETRVPLFFLGDFNNPVDSQGYYTVRESCLLLQDSYVVANEKGKAAT-VEKKIDGWEQNT 232
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + Y + +S H + IE D +
Sbjct: 233 -EKLRIDFIFVPEGMQVKKYQRIFDGIDSPIISDHYGVEIELDVNE 277
>gi|289566966|ref|ZP_06447369.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium D344SRF]
gi|294613977|ref|ZP_06693909.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium E1636]
gi|289161234|gb|EFD09131.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium D344SRF]
gi|291593171|gb|EFF24748.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium E1636]
Length = 277
Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 2/106 (1%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
++T +P GDFN ++S G + + ++ ++ V K+
Sbjct: 174 LETRVPLFFLGDFNNPVDSQGYYTVRESCLLLQDSYVVANEKGKAAT-VEKKIDGWEQNT 232
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + Y + +S H + IE D +
Sbjct: 233 -EKLRIDFIFVPEGMQVKKYQRIFDGIDSPIISDHYGVEIELDVNE 277
>gi|254472835|ref|ZP_05086234.1| endonuclease/exonuclease/phosphatase [Pseudovibrio sp. JE062]
gi|211958299|gb|EEA93500.1| endonuclease/exonuclease/phosphatase [Pseudovibrio sp. JE062]
Length = 289
Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 8/113 (7%)
Query: 10 KKWADQKIKTGIPF--VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
W + + + +P ++ GD N + + + + V
Sbjct: 178 AHWLNDEPQPTMPTDCILLGDMNNGPGTPVYE--VFTGPPSEEGGRVQTLDGFVDPWVWL 235
Query: 68 RN--KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
N S R + + S +K S H P+ +E
Sbjct: 236 GNEEMSGKTAHFDTRRIDHVFVGASLRHRIAG--MWVDEDAKGSDHLPVWLEL 286
>gi|69250590|ref|ZP_00605170.1| Endonuclease/exonuclease/phosphatase [Enterococcus faecium DO]
gi|68193924|gb|EAN08498.1| Endonuclease/exonuclease/phosphatase [Enterococcus faecium DO]
Length = 204
Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 101 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 147
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 148 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 204
>gi|316994995|gb|ADU79051.1| DNA lyase [Mycosphaerella graminicola]
Length = 492
Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 15/150 (10%), Positives = 29/150 (19%), Gaps = 43/150 (28%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQK 45
L ++ G V+ GD N + I F Q
Sbjct: 56 ALDCRIRNLMRQGKRVVLVGDLNVTRHEIDSAGHLEDIRKRNATHEDIVSGPNRRIFNQL 115
Query: 46 MDP----------------DGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLID 88
+ F + + + + D
Sbjct: 116 LTDGEVIGERDEGREAGVLWDTTRGFHPARRGMYTHWDTKKNARPGNSGSRIDFVLVADV 175
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S HCP+ ++
Sbjct: 176 MQSWVKDANI----QEGLLGSDHCPVYADF 201
>gi|326790116|ref|YP_004307937.1| endonuclease/exonuclease/phosphatase [Clostridium lentocellum DSM
5427]
gi|326540880|gb|ADZ82739.1| Endonuclease/exonuclease/phosphatase [Clostridium lentocellum DSM
5427]
Length = 266
Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 39/111 (35%), Gaps = 2/111 (1%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+++ + ++ GDFN N + D+ +D ++ ++
Sbjct: 157 DRLVEEMDSDKLSLLMGDFNNNANLREEGYDYL--IDKGFYDTYILAGEKDQGVTVQGEI 214
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + L++ + ++ S ++ +S H + +E + E
Sbjct: 215 AGWKGNKVGLRIDLILVNKTLTVKSSKVIFNGDYKNVVSDHYGVEVELELE 265
>gi|310766699|gb|ADP11649.1| hypothetical protein EJP617_19680 [Erwinia sp. Ejp617]
Length = 253
Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 21/109 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q + P ++AGDFN Q+++ R +E R K+
Sbjct: 161 EQIVHHQGPVIMAGDFNA---------WSRQRINALYRFAREMGLREVRFTDDHRRKAFG 211
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + S + + S H PL +E+DF
Sbjct: 212 RPLDFIFYRGMRVAEASVLVT------------RASDHNPLLVEFDFNS 248
>gi|255036462|ref|YP_003087083.1| Endonuclease/exonuclease/phosphatase [Dyadobacter fermentans DSM
18053]
gi|254949218|gb|ACT93918.1| Endonuclease/exonuclease/phosphatase [Dyadobacter fermentans DSM
18053]
Length = 265
Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 19/104 (18%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
T +P ++ GDFN +S + + C + V
Sbjct: 181 NTELPMILGGDFNATPDSPVI-----------AFFDQHFTRSCTNCKPT------IPVEV 223
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + S + + S H P+T E+ +
Sbjct: 224 PKKTIDFIMHKKDSQLKSANTKVI--DEKYASDHLPVTAEFTLD 265
>gi|221220202|gb|ACM08762.1| Deoxyribonuclease gamma precursor [Salmo salar]
Length = 294
Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 2/100 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GDFN + + D ++ D + T + + +
Sbjct: 127 DHIMILGDFNADGSYVTKGDMTNIRIRSDEKFHWVIGDDVDTTANTSNDHTYDRIVMYGD 186
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
D N ++ NS ++ ++ ++ L S H P+ +E
Sbjct: 187 DMLNAMVPNSAKPFNFHKAFRLSKAMALSISDHYPVEVEL 226
>gi|166363682|ref|YP_001655955.1| hypothetical protein MAE_09410 [Microcystis aeruginosa NIES-843]
gi|166086055|dbj|BAG00763.1| unknown protein [Microcystis aeruginosa NIES-843]
Length = 313
Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 4/96 (4%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
VI GDFN SI + + GL + SL + +
Sbjct: 220 VIMGDFNLTSWSIYFRN----FIINSGLRSVNLGHGLNPTWFYTDEARSLSHLDHWKQAL 275
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
ID+ F + + T S +S H P+ +
Sbjct: 276 KIPIDHIFVSQNVRVDQVITLPSGVSDHRPVIAKLR 311
>gi|320104723|ref|YP_004180314.1| endonuclease/exonuclease/phosphatase [Isosphaera pallida ATCC
43644]
gi|319752005|gb|ADV63765.1| Endonuclease/exonuclease/phosphatase [Isosphaera pallida ATCC
43644]
Length = 390
Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 12/113 (10%), Positives = 26/113 (23%), Gaps = 20/113 (17%)
Query: 12 WADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
W + + G+P ++ GDFN +++
Sbjct: 281 WIRAQSARDGLPTIVCGDFN-----QPTQSYLFRRDWGGFADAFQVAGLGYGHTWFS--- 332
Query: 71 SSLDYFVIDRDNKNFLIDNS-FSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L S ++ + S H P+ +
Sbjct: 333 -----SWHGLRIDHVLGSPSHWNPRRCEVGPDMR-----SDHRPVLADLALRS 375
>gi|293557058|ref|ZP_06675618.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium E1039]
gi|291600878|gb|EFF31170.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium E1039]
Length = 277
Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 2/106 (1%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
++T +P GDFN ++S G + + ++ ++ V K+
Sbjct: 174 LETRVPLFFLGDFNNPVDSQGYYTVRESCLLLQDSYVVANEKGKAAT-VEKKIDGWEQNT 232
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + Y + +S H + IE D +
Sbjct: 233 -EKLRIDFIFVPEGMQVKKYQRIFDGIDSPIISDHYGVEIELDVNE 277
>gi|167555152|ref|NP_001107928.1| hypothetical protein LOC797209 [Danio rerio]
gi|160773435|gb|AAI55114.1| LOC797209 protein [Danio rerio]
Length = 558
Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 10/113 (8%), Positives = 25/113 (22%), Gaps = 8/113 (7%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+WL ++ + + N D + F ++ +
Sbjct: 208 KWLDQFLFETAENSENG------NAADEPAEDFQESASGGKFVDSFRYFHPKRSNALTCW 261
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++S + + S HCP+ +
Sbjct: 262 STLTG-ARQTNYGTRIDYIFSNHSLVKT-FFIGVDIMPEVEGSDHCPVWAQLS 312
>gi|69244470|ref|ZP_00602886.1| Endonuclease/exonuclease/phosphatase [Enterococcus faecium DO]
gi|257881648|ref|ZP_05661301.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium
1,231,502]
gi|258615343|ref|ZP_05713113.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium DO]
gi|293562857|ref|ZP_06677329.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium E1162]
gi|294623334|ref|ZP_06702194.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium U0317]
gi|68196411|gb|EAN10839.1| Endonuclease/exonuclease/phosphatase [Enterococcus faecium DO]
gi|257817306|gb|EEV44634.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium
1,231,502]
gi|291597228|gb|EFF28419.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium U0317]
gi|291605181|gb|EFF34643.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium E1162]
Length = 277
Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 2/106 (1%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
++T +P GDFN ++S G + + ++ ++ V K+
Sbjct: 174 LETRVPLFFLGDFNNPVDSQGYYTVRESCLLLQDSYVVANEKGKAAT-VEKKIDGWEQNT 232
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + Y + +S H + IE D +
Sbjct: 233 -EKLRIDFIFVPEGMQVKKYQRIFDGIDSPIISDHYGVEIELDVNE 277
>gi|320354858|ref|YP_004196197.1| endonuclease/exonuclease/phosphatase [Desulfobulbus propionicus DSM
2032]
gi|320123360|gb|ADW18906.1| Endonuclease/exonuclease/phosphatase [Desulfobulbus propionicus DSM
2032]
Length = 243
Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 23/116 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E L K Q P ++AGDFN ++ + ++
Sbjct: 151 QLERLYKLIRQV---DRPMILAGDFNVLWGMREL------ELFLGATGLISANPEKKPSY 201
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ R+ L +V + + S H PL ++ F
Sbjct: 202 PSR---------APKRELDFILHSPELKVVHFHIPSVTY-----SDHAPLICDFTF 243
>gi|321477228|gb|EFX88187.1| hypothetical protein DAPPUDRAFT_305561 [Daphnia pulex]
Length = 476
Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 34/135 (25%), Gaps = 24/135 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------WQKMDP--------- 48
L + G ++ GD N I + +
Sbjct: 162 RALNLRCHDFLSQGYYVIVLGDMNVSHRLIDHCEPEDVSSFPKSPSRLWLDGFLHEGGGK 221
Query: 49 --DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
D +P ++++ + + ++ + L+ N Q +
Sbjct: 222 FVDSFRHLYPTKEKAFTCWNTKLSARVNNYG--TRIDYILLSNQL--TDALQDCIIMSDV 277
Query: 107 KLSTHCPLTIEYDFE 121
S HCP+ +
Sbjct: 278 YGSDHCPVKSSLALD 292
>gi|331237187|ref|XP_003331251.1| hypothetical protein PGTG_13214 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309310241|gb|EFP86832.1| hypothetical protein PGTG_13214 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 710
Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 10/117 (8%), Positives = 26/117 (22%), Gaps = 7/117 (5%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-FWQKMDPDGLLIRFPQEKESTCNVIK 67
L W +P ++ D N + ++ + ++
Sbjct: 298 LHSWLSNNYSRQLPTILMMDSNLHH---PRWNPPHYRHTHSASKDLIKICGRKGFFLTSP 354
Query: 68 -RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L ++ + S S H P+ + +
Sbjct: 355 PGVPTFLGPKGTQTTIDLCWVNTHCKPRIRECSVALEN--HASDHQPIRLTLSLTEA 409
>gi|145354287|ref|XP_001421421.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145354354|ref|XP_001421452.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581658|gb|ABO99714.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581689|gb|ABO99745.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 401
Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 26/127 (20%), Gaps = 24/127 (18%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDG---------------------LLIRFP 56
G P V+ GDFN + ++
Sbjct: 273 AAGDPLVLCGDFNGEPEDGVIRYLTKGEISASDEDWVRGSLFRAVPIGCGAHLRTARPLF 332
Query: 57 QEKESTCNVIK--RNKSSLDYFVIDR-DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+LDY D + + + S H P
Sbjct: 333 SAGGFLEWTNYVGGFVGALDYVWCSTSDFASRATSPLPDMSAVLAHTALPNAQFPSDHIP 392
Query: 114 LTIEYDF 120
+ ++ D
Sbjct: 393 VIVDVDL 399
>gi|222837089|gb|EEE75468.1| predicted protein [Populus trichocarpa]
Length = 203
Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 100 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 146
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 147 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 203
>gi|19112103|ref|NP_595311.1| inositol-polyphosphate 5-phosphatase (synaptojanin homolog 2)
[Schizosaccharomyces pombe 972h-]
gi|74638872|sp|Q9USQ6|SYJ2_SCHPO RecName: Full=Inositol-1,4,5-trisphosphate 5-phosphatase 2;
AltName: Full=Synaptojanin-like protein 2
gi|5830513|emb|CAB54821.1| inositol-polyphosphate 5-phosphatase (synaptojanin homolog 2)
[Schizosaccharomyces pombe]
Length = 889
Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 16/119 (13%)
Query: 19 TGIPFVIAGDFNRKINSI----------------GDTDDFWQKMDPDGLLIRFPQEKEST 62
+ GDFN +I+S D +M + + + +
Sbjct: 743 DHTNILWMGDFNYRIDSDNEEVRKLVELDDLDKLASYDQLCTEMKKGTVFHGLVEPQLTF 802
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
K + + DY D+ D + S+ ++ + + S H P+ + +
Sbjct: 803 LPTYKFDNGTNDYDTSDKQRVPSWTDRILATKSFTRNCYKSCDIRCSDHRPVFATFSLK 861
>gi|284121624|ref|ZP_06386820.1| Endonuclease/exonuclease/phosphatase [Candidatus Poribacteria sp.
WGA-A3]
gi|283829405|gb|EFC33793.1| Endonuclease/exonuclease/phosphatase [Candidatus Poribacteria sp.
WGA-A3]
Length = 378
Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 39/123 (31%), Gaps = 20/123 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST---------C 63
+ ++ +I GD N G D Q+ + L +E+
Sbjct: 255 VARFLEQDRDVIILGDLNTM----GAGDRHSQRSELKYLRRMVAKEEPGFDDLSPKPRCS 310
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-------LDTRRSKLSTHCPLTI 116
+ + LD+ ++ +D ++ + +LS HCP+ I
Sbjct: 311 HYFRGRGEWLDHVLVAKDMTEMRTRSARVTGYCAVAGCRRIKGEYPPAYRRLSDHCPVII 370
Query: 117 EYD 119
E D
Sbjct: 371 EID 373
>gi|149378372|ref|ZP_01896074.1| Exonuclease III [Marinobacter algicola DG893]
gi|149357337|gb|EDM45857.1| Exonuclease III [Marinobacter algicola DG893]
Length = 268
Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 33 INSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
+ D + +M ++ ++ + S I L+
Sbjct: 181 PHERAWLDRLFDEMGCVDAFRDINKQSNQYTWWPEQAEGSRKNAGI--RVDYQLLTPGIR 238
Query: 93 IVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
Q ++ S H P+ ++YD E
Sbjct: 239 KTI--QDGWIDDSTRFSDHAPVIMDYDIE 265
>gi|153006343|ref|YP_001380668.1| endonuclease/exonuclease/phosphatase [Anaeromyxobacter sp. Fw109-5]
gi|152029916|gb|ABS27684.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter sp. Fw109-5]
Length = 340
Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats.
Identities = 12/116 (10%), Positives = 29/116 (25%), Gaps = 5/116 (4%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + +P V+ GDFN + + C
Sbjct: 228 QAAELVD----VAGSDLPVVLVGDFNSAPGDPAYELLVSGPVGLRDAWEAGAGPGLTCCR 283
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ ++ +D + +++ + + S H + +
Sbjct: 284 EQVDDPAAALTQRVDLILHRGFTARTIALLGAEAASFQAGHW-PSDHAGVAATLEL 338
>gi|329577242|gb|EGG58708.1| conserved domain protein [Enterococcus faecalis TX1467]
Length = 110
Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N +
Sbjct: 13 AQYPTLLMGDFNAESGE-EVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 66
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 67 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 104
>gi|260558547|ref|ZP_05830743.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium C68]
gi|261206796|ref|ZP_05921487.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium TC 6]
gi|260075721|gb|EEW64027.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium C68]
gi|260078926|gb|EEW66626.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium TC 6]
Length = 274
Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 2/106 (1%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
++T +P GDFN ++S G + + ++ ++ V K+
Sbjct: 171 LETRVPLFFLGDFNNPVDSQGYYTVRESCLLLQDSYVVANEKGKAAT-VEKKIDGWEQNT 229
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + Y + +S H + IE D +
Sbjct: 230 -EKLRIDFIFVPEGMQVKKYQRIFDGIDSPIISDHYGVEIELDVNE 274
>gi|254504971|ref|ZP_05117122.1| endonuclease/exonuclease/phosphatase family [Labrenzia alexandrii
DFL-11]
gi|222441042|gb|EEE47721.1| endonuclease/exonuclease/phosphatase family [Labrenzia alexandrii
DFL-11]
Length = 361
Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 10/111 (9%), Positives = 27/111 (24%), Gaps = 13/111 (11%)
Query: 13 ADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+++++ P + GD+N + + V +
Sbjct: 259 IAERLESDATPLIAIGDWNSAP-------WSARFQRSLEANDLATAYPDGIPQVTRYFFD 311
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+++ + D+ S H PL + +
Sbjct: 312 YRLRWILGSPVDQVAVSKDI-----GIVDVSLGPHIGSDHRPLLVTLQLPE 357
>gi|302143617|emb|CBI22370.3| unnamed protein product [Vitis vinifera]
Length = 2099
Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 17/107 (15%)
Query: 20 GIPFVIAGDFNRKINS---------IGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
G P+ + GDFN ++ F Q M+ L+ Q +
Sbjct: 135 GEPWCVGGDFNVILSQGERSRQGRISPAMRRFAQVMNDLELVDLPLQG-GTFTWSGGFQN 193
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
F++ S+ + + +S H P+ IE
Sbjct: 194 Q------AWARLDRFMVSPSW-LDQFRNVTQKRLSRPISDHFPIIIE 233
>gi|325108266|ref|YP_004269334.1| endonuclease/exonuclease/phosphatase [Planctomyces brasiliensis DSM
5305]
gi|324968534|gb|ADY59312.1| Endonuclease/exonuclease/phosphatase [Planctomyces brasiliensis DSM
5305]
Length = 320
Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 37/138 (26%), Gaps = 23/138 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E++ + + +P + GDFN + Q + +++ +
Sbjct: 184 EFVSRTVREYEGQAVPVIAMGDFNDEPEDASF-APMRQAGMVSTMDSLAQEDRWTLGYYD 242
Query: 67 KRNKSSL----DYFVIDRDNKN----FLIDNSFSIVSYDQSDLD--------------TR 104
+ D I + + + + +D
Sbjct: 243 RDASRMDLLCFDQIWITPNLQQSPGMRWVRTEVVRPRFMINDRRQFNGVRIPLPIDDYRD 302
Query: 105 RSKLSTHCPLTIEYDFEK 122
R S H P+ + FE+
Sbjct: 303 RIGYSDHYPVKATFAFEQ 320
>gi|148360915|ref|YP_001252122.1| endonuclease/exonuclease/phosphatase family transporter protein
[Legionella pneumophila str. Corby]
gi|296106019|ref|YP_003617719.1| endonuclease/exonuclease/phosphatase family protein [Legionella
pneumophila 2300/99 Alcoy]
gi|148282688|gb|ABQ56776.1| endonuclease/exonuclease/phosphatase family protein [Legionella
pneumophila str. Corby]
gi|295647920|gb|ADG23767.1| endonuclease/exonuclease/phosphatase family protein [Legionella
pneumophila 2300/99 Alcoy]
Length = 251
Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 14/117 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + L + + P ++AGDFN + + + + + + +
Sbjct: 148 EQCKALIQRIKDVVPKNEPLIMAGDFNDWRH--VISKILAENLGIEEAFVALEGQHA--- 202
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R+ ++ + + V+ Q LS H PL ++
Sbjct: 203 ----RSFPAIKPALCVDRVYFRGMK--VQEVACLQGKPWR---MLSDHLPLYARFEL 250
>gi|19112314|ref|NP_595522.1| AP-endonuclease Apn2 [Schizosaccharomyces pombe 972h-]
gi|48427993|sp|P87175|APN2_SCHPO RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=AP endonuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2
gi|2117306|emb|CAB09119.1| AP-endonuclease Apn2 [Schizosaccharomyces pombe]
gi|40287246|gb|AAR83752.1| AP-endonuclease-like protein [Schizosaccharomyces pombe]
Length = 523
Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 35/138 (25%), Gaps = 30/138 (21%)
Query: 7 EWLKKWADQKIKTGIP-FVIAGDFNRKINSIGDTDDF----------------------- 42
+ L++ ++ IK G ++ GD N N I D
Sbjct: 169 KALRERIERLIKEGNRKIILVGDVNILCNPIDTADQKDIIRESLIPSIMESRQWIRDLLL 228
Query: 43 -WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ + ++ R + + L + + Q
Sbjct: 229 PSRLGLLLDIGRIQHPTRKGMFTCWNTRLNTRPTNYG--TRIDYTLATPDL--LPWVQDA 284
Query: 101 LDTRRSKLSTHCPLTIEY 118
S HCP+ ++
Sbjct: 285 DIMAEVMGSDHCPVYLDL 302
>gi|319939581|ref|ZP_08013940.1| exodeoxyribonuclease III [Streptococcus anginosus 1_2_62CV]
gi|319811170|gb|EFW07476.1| exodeoxyribonuclease III [Streptococcus anginosus 1_2_62CV]
Length = 275
Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 21/141 (14%), Positives = 43/141 (30%), Gaps = 25/141 (17%)
Query: 1 MLSQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------- 49
++ +Q W +K+AD + P + GD+N N I + P
Sbjct: 139 LVERQV-WDQKYADYLTTLDEKKPVLATGDYNVAHNEIDLAHPSSNRRSPGFTDEERSGF 197
Query: 50 ---------GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
+ + +R+K+S +L N +
Sbjct: 198 TNLLNRGFTDTFRYIHGDIPNVYSWWAQRSKTSKIN-NSGWRIDYWLTSNRIADKVTKSE 256
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
+D+ + H P+ +E +
Sbjct: 257 MIDSGTRQ--DHTPIVLEIEL 275
>gi|257879024|ref|ZP_05658677.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium
1,230,933]
gi|257890876|ref|ZP_05670529.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium
1,231,410]
gi|257813252|gb|EEV42010.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium
1,230,933]
gi|257827236|gb|EEV53862.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium
1,231,410]
Length = 274
Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 2/106 (1%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
++T +P GDFN ++S G + + ++ ++ V K+
Sbjct: 171 LETRVPLFFLGDFNNPVDSQGYYTVRESCLLLQDSYVVANEKGKAAT-VEKKIDGWEQNT 229
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + Y + +S H + IE D +
Sbjct: 230 -EKLRIDFIFVPEGMQVKKYQRIFDGIDSPIISDHYGVEIELDVNE 274
>gi|94989847|ref|YP_597947.1| exodeoxyribonuclease III [Streptococcus pyogenes MGAS10270]
gi|94543355|gb|ABF33403.1| Exodeoxyribonuclease III [Streptococcus pyogenes MGAS10270]
Length = 303
Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 38/143 (26%), Gaps = 33/143 (23%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQK 45
+Q W K+AD ++ P + GD+N I + +
Sbjct: 169 DRQI-WDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPSSNRRSPGFTDEERQGFTN 227
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N +
Sbjct: 228 LLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKIN-NTGWRIDYWLASNRL------VDKV 280
Query: 102 DTRRSKLS----THCPLTIEYDF 120
S H P+ ++ D
Sbjct: 281 KRSEMISSGERQDHTPIFLDIDL 303
>gi|53712613|ref|YP_098605.1| hypothetical protein BF1322 [Bacteroides fragilis YCH46]
gi|52215478|dbj|BAD48071.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
Length = 285
Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 25/107 (23%), Gaps = 4/107 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I P ++ GDFN + ++
Sbjct: 182 KEIAGTHPAMMTGDFNVSEEWEAYKTITSNEFVLKDAWKIAGKQSGEN-YTFHDFGRVP- 239
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYDF 120
+ + + S T + LS H + +F
Sbjct: 240 -VAEREKIDFIFVTPQIKVADAEIISSAITDSTYLSDHNAHLADLEF 285
>gi|320108666|ref|YP_004184256.1| endonuclease/exonuclease/phosphatase [Terriglobus saanensis SP1PR4]
gi|319927187|gb|ADV84262.1| Endonuclease/exonuclease/phosphatase [Terriglobus saanensis SP1PR4]
Length = 1261
Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 26/145 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--------------- 49
Q E + K+ Q + G + GDFN S G TD + +
Sbjct: 846 QAEDIAKYI-QSLPAGTHVISGGDFNAFEFSDGYTDTLATYTNTNVLPANQVVQPGVAGL 904
Query: 50 ----GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
L + V N LD+ V+ D +++ ++ D
Sbjct: 905 VTPLTDLALLLPADQRWSYVEYGNAQILDHLVVTPDLVAAGAHMAYAHLNADFPTTAYND 964
Query: 106 ----SKLSTHCPLTIE-YDFEKGNV 125
++ S H + + + N+
Sbjct: 965 AATPARTSDHD-VAVGYFTLPPPNM 988
>gi|289522833|ref|ZP_06439687.1| endonuclease/exonuclease/phosphatase family protein [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503857|gb|EFD25021.1| endonuclease/exonuclease/phosphatase family protein [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 240
Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 20/115 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ L++ + + + P ++AGD N + +
Sbjct: 146 AKQLEELSRKCLSADKPVILAGDCNTFGGEEELEPLIRKVGLKNANADCM------PTYP 199
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ LD+ + +DL R S H PL ++
Sbjct: 200 SSSPRMLLDFVLHSPKI--------------KVTDLLIPRVTFSDHLPLVCDFAL 240
>gi|290980569|ref|XP_002673004.1| predicted protein [Naegleria gruberi]
gi|284086585|gb|EFC40260.1| predicted protein [Naegleria gruberi]
Length = 789
Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 12/121 (9%), Positives = 36/121 (29%), Gaps = 17/121 (14%)
Query: 7 EWLKKWADQKIK-TGIPFVIAGDFNRK---INSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
E + + + + +++GD N + + D W +L + +
Sbjct: 53 EAINSFINAVLTCKDEHIILSGDLNIDTQNPTTTREKDWIWIL----EMLKLTEFKTPNY 108
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + + + + + +V T H P ++ +F+
Sbjct: 109 TWIRRSQGTLIR-----SRPDHIFVSKNIRVVKEVIMTPLTTN----DHVPFYLDLEFKS 159
Query: 123 G 123
Sbjct: 160 N 160
>gi|218186665|gb|EEC69092.1| hypothetical protein OsI_37986 [Oryza sativa Indica Group]
Length = 470
Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQSD--LDTRR 105
+EK+ C Y FL+ IVS D ++
Sbjct: 385 DAYRYLHKEKDMDCGFSWSGHPIGKYRGKRMRIDYFLVSEKLKDQIVSCDIHGRGIELEG 444
Query: 106 SKLSTHCPLTIEYD 119
S HCP+++E
Sbjct: 445 FYGSDHCPVSLELS 458
>gi|149047282|gb|EDL99951.1| rCG36041 [Rattus norvegicus]
Length = 485
Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 26/138 (18%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD--------------TDDFWQKMDPDGLL 52
L+ A+ + G +I GD N + I +
Sbjct: 175 RLLQIRAEALLAAGSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMDGLLSNLEYP 234
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY-----------DQSDL 101
F N + + Y Q
Sbjct: 235 AGSHIGPFMDSY-RYFYPKQERAFTCWSMISGARSLNYGTRLDYILGNRDLIIDTLQDAF 293
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+ +
Sbjct: 294 LLPEVMGSDHCPVGAVLN 311
>gi|109499818|ref|XP_223499.3| PREDICTED: APEX nuclease (apurinic/apyrimidinic endonuclease) 2
[Rattus norvegicus]
gi|109500734|ref|XP_001059968.1| PREDICTED: APEX nuclease (apurinic/apyrimidinic endonuclease) 2
[Rattus norvegicus]
Length = 516
Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 26/138 (18%), Gaps = 26/138 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD--------------TDDFWQKMDPDGLL 52
L+ A+ + G +I GD N + I +
Sbjct: 175 RLLQIRAEALLAAGSHVIILGDINTAHHPIDHCNAGNLECFEEDLGRRWMDGLLSNLEYP 234
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY-----------DQSDL 101
F N + + Y Q
Sbjct: 235 AGSHIGPFMDSY-RYFYPKQERAFTCWSMISGARSLNYGTRLDYILGNRDLIIDTLQDAF 293
Query: 102 DTRRSKLSTHCPLTIEYD 119
S HCP+ +
Sbjct: 294 LLPEVMGSDHCPVGAVLN 311
>gi|39971027|ref|XP_366904.1| hypothetical protein MGG_02980 [Magnaporthe oryzae 70-15]
gi|149210567|ref|XP_001522658.1| hypothetical protein MGCH7_ch7g758 [Magnaporthe oryzae 70-15]
gi|86196713|gb|EAQ71351.1| hypothetical protein MGCH7_ch7g758 [Magnaporthe oryzae 70-15]
gi|145017186|gb|EDK01549.1| hypothetical protein MGG_02980 [Magnaporthe oryzae 70-15]
Length = 626
Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 16/157 (10%), Positives = 29/157 (18%), Gaps = 45/157 (28%)
Query: 4 QQG--EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q + + + G V+ GD N N +
Sbjct: 139 RQAFHKAMDARVRNLVAMGKQVVLTGDLNIIRNELDTAGILERLRKEEMTIDEFFSTPSR 198
Query: 39 ---------------TDDFWQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDN 82
D+ ++ L F ++ R +
Sbjct: 199 RFLNHMVFGGTVVGGRDEGREEPVMYDLGREFHPDRIGMYTCWETRKNA--RPGNFGSRI 256
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L S HCP+
Sbjct: 257 DYVLCSAGMKDW--FIDANIQEGLLGSDHCPVYATLS 291
>gi|317478347|ref|ZP_07937511.1| endonuclease/Exonuclease/phosphatase [Bacteroides sp. 4_1_36]
gi|316905506|gb|EFV27296.1| endonuclease/Exonuclease/phosphatase [Bacteroides sp. 4_1_36]
Length = 366
Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 12/111 (10%), Positives = 21/111 (18%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ GDFN S +
Sbjct: 268 QADTIAHEITA--SPHPYIIVCGDFNDTPISYTHRTIAQDL-------DDAFTQSGRGLG 318
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N L + + K S H P+
Sbjct: 319 ISYNQNRFYF------RIDNILTSKNLRAYNCTVDRSI----KESDHYPIW 359
>gi|16904257|gb|AAL30837.1|AF440399_1 DNA lyase [Mycosphaerella graminicola]
Length = 491
Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats.
Identities = 17/148 (11%), Positives = 30/148 (20%), Gaps = 39/148 (26%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------TDDFWQK 45
L ++ G V+ GD N + I F Q
Sbjct: 56 ALDCRIRNLMRQGKRVVLVGDLNVTRHEIDSAGHLEDIRKRNATHEDIVSGPNRRIFNQL 115
Query: 46 MDPD---------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS 90
+ R K + L+ +
Sbjct: 116 LTDGEVIGERDEGRDAGVLWDTTRGFHPTRRGMYTHWDTKKNARPGNSGSRIDFVLVADV 175
Query: 91 FSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S+ + S HCP+ ++
Sbjct: 176 MQ--SWVKDANIQEGLLGSDHCPVYADF 201
>gi|330969502|gb|EGH69568.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 380
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 32/132 (24%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP------ 56
+Q + D+ G P++I GDFN Q++
Sbjct: 248 QKQVAATETQLDKLESGGTPWLIGGDFNLLPLGQYQRLPEQQRLGYAADSELHQLWDKYP 307
Query: 57 -------QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + DR S VS DT +S
Sbjct: 308 MIPNNAESSGIDRSKWLTHFPNDSRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--IS 365
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 366 DHLPVIGRFLLP 377
>gi|317476018|ref|ZP_07935271.1| endonuclease/Exonuclease/phosphatase [Bacteroides eggerthii
1_2_48FAA]
gi|316907813|gb|EFV29514.1| endonuclease/Exonuclease/phosphatase [Bacteroides eggerthii
1_2_48FAA]
Length = 371
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 21/104 (20%), Gaps = 17/104 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
I + P ++ GDFN +S L F Y
Sbjct: 285 IASPHPVLVCGDFNSLPSSYTYRQ------LSGILQDGFKTGGHGYMYTY-------RYA 331
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ Y S H P+ +
Sbjct: 332 KHMLRIDYAFHSSKLDCTDY----YSPDLDLCSDHNPVIFTVKY 371
>gi|293368736|ref|ZP_06615341.1| Ser/Thr phosphatase family protein [Bacteroides ovatus SD CMC 3f]
gi|298480109|ref|ZP_06998308.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. D22]
gi|292636201|gb|EFF54688.1| Ser/Thr phosphatase family protein [Bacteroides ovatus SD CMC 3f]
gi|298273918|gb|EFI15480.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. D22]
Length = 611
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 15/99 (15%), Positives = 24/99 (24%), Gaps = 17/99 (17%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P +AGD N + S + K I EK + +
Sbjct: 167 KPLFLAGDMNAEPESD------FIKELQKDFQILSNPEKHTYPAPDPK-----------E 209
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S S H P+ +E
Sbjct: 210 AIDYIAVSKQNATGFAVISAKVVNELMASDHRPILVELR 248
>gi|160884084|ref|ZP_02065087.1| hypothetical protein BACOVA_02060 [Bacteroides ovatus ATCC 8483]
gi|156110426|gb|EDO12171.1| hypothetical protein BACOVA_02060 [Bacteroides ovatus ATCC 8483]
Length = 611
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 15/99 (15%), Positives = 24/99 (24%), Gaps = 17/99 (17%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P +AGD N + S + K I EK + +
Sbjct: 167 KPLFLAGDMNAEPESD------FIKELQKDFQILSNPEKHTYPAPDPK-----------E 209
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S S H P+ +E
Sbjct: 210 AIDYIAVSKQNATGFAVISAKVVNELMASDHRPILVELR 248
>gi|116511599|ref|YP_808815.1| exonuclease III [Lactococcus lactis subsp. cremoris SK11]
gi|116107253|gb|ABJ72393.1| Exonuclease III [Lactococcus lactis subsp. cremoris SK11]
Length = 285
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 29/130 (22%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRFP----- 56
+ P + GDFN I + + ++ G F
Sbjct: 159 LDAQKPVFVCGDFNAAYTEIDLANPRGNHNSAGFTDQEREKFGQLLEAGFTDTFRKLHGP 218
Query: 57 ------QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + +R K+S +L+ N + + S+ +L
Sbjct: 219 VEKFYEEGRSIYTWFAQRAKTSKLN-NSGWRIDYWLVSNRLA-DAIKVSEPLDSGERL-D 275
Query: 111 HCPLTIEYDF 120
H P+ +E++
Sbjct: 276 HVPILLEFEL 285
>gi|88799498|ref|ZP_01115075.1| hypothetical protein MED297_03917 [Reinekea sp. MED297]
gi|88777808|gb|EAR09006.1| hypothetical protein MED297_03917 [Reinekea sp. MED297]
Length = 280
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 17/120 (14%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L ++I P ++ GDFN W + P + +
Sbjct: 176 RRQSSELTAERIEQIAGETPVILLGDFNA---------PVWFREVERFEPKLTPIKPGGS 226
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDN-SFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + LI + + D S H P++ + F
Sbjct: 227 T-------NRILGLKLLPAIDHILISDDFVADTDVQVWDRRYGGEYPSDHFPISADIRFS 279
>gi|290972380|ref|XP_002668931.1| predicted protein [Naegleria gruberi]
gi|284082469|gb|EFC36187.1| predicted protein [Naegleria gruberi]
Length = 236
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 38/131 (29%), Gaps = 19/131 (14%)
Query: 3 SQQGEWLKKWADQKIK----------TGIPFVIAGDFNRKI-NSIGDTDDFWQKMDPDGL 51
+Q + L ++ + KI + VI GD+N +S M GL
Sbjct: 113 REQIKELVQFVNDKIDNFRNHYQIDFENVRVVICGDYNIDSLHSNDSYAYLKNSMSSLGL 172
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD-TRRSKLST 110
F + + + I N+ S+D ++S
Sbjct: 173 KNVFGDDTSRHPVTYP------IPTFNNWCLDHVFISNN-CKHSFDIIRWKNEDGIEVSD 225
Query: 111 HCPLTIEYDFE 121
H + FE
Sbjct: 226 HYGVRTTIHFE 236
>gi|297198294|ref|ZP_06915691.1| endonuclease/exonuclease/phosphatase [Streptomyces sviceus ATCC
29083]
gi|297147051|gb|EFH28465.1| endonuclease/exonuclease/phosphatase [Streptomyces sviceus ATCC
29083]
Length = 377
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 27/118 (22%), Gaps = 10/118 (8%)
Query: 16 KIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKE-STCNVIKRNKSS 72
+I P V+ GDFN ++ + + G F Q + + +
Sbjct: 256 RIGDSAPVVLVGDFNCPSHLDWPDVEWPVTKAAEEAGFGDSFRQARPDAVRDPGHTWSPV 315
Query: 73 LDYFVIDRDNKNF-LIDNSFSIVSYDQSDLDT------RRSKLSTHCPLTIEYDFEKG 123
+ SD S H + + G
Sbjct: 316 HAHPEPQDRIDFVLHRGLRVLDSRTCVSDTPRTWPDVEDNDWPSDHAAVITTFSLGSG 373
>gi|86148017|ref|ZP_01066320.1| Metal-dependent hydrolase [Vibrio sp. MED222]
gi|85834241|gb|EAQ52396.1| Metal-dependent hydrolase [Vibrio sp. MED222]
Length = 215
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD 38
L Q + L KW Q+ + G + I GDFN ++
Sbjct: 174 LKDQAQQLNKWIQQRERQGQDYAILGDFNHNLSYSEI 210
>gi|332532029|ref|ZP_08407913.1| hypothetical protein PH505_ab01530 [Pseudoalteromonas haloplanktis
ANT/505]
gi|332038656|gb|EGI75099.1| hypothetical protein PH505_ab01530 [Pseudoalteromonas haloplanktis
ANT/505]
Length = 360
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 26/112 (23%), Gaps = 16/112 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A P ++AGD N + + + + N
Sbjct: 229 AKALKNPTRPTIVAGDLNDVA-----WSRSTRLFMQISGFLDPRKGRGFY------NTFH 277
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
YF + + + + S H L E +E N
Sbjct: 278 ASYFFMRWPLDHLFHSEG-----FKVKRIKRLAKYGSDHFALLTELSYENAN 324
>gi|301162321|emb|CBW21866.1| putative endonuclease/exonuclease/phosphatase family protein
[Bacteroides fragilis 638R]
Length = 285
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 25/107 (23%), Gaps = 4/107 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I P ++ GDFN + ++
Sbjct: 182 KEIAGTHPAMMTGDFNVSEEWEAYKTITSNEFVLKDAWKIAGKQSGEN-YTFHDFGRVP- 239
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYDF 120
+ + + S T + LS H + +F
Sbjct: 240 -VAEREKIDFIFVTPQIKVADAEIISSAITDSTYLSDHNAHLADLEF 285
>gi|294777627|ref|ZP_06743078.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
vulgatus PC510]
gi|319640218|ref|ZP_07994944.1| hypothetical protein HMPREF9011_00541 [Bacteroides sp. 3_1_40A]
gi|294448695|gb|EFG17244.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
vulgatus PC510]
gi|317388205|gb|EFV69058.1| hypothetical protein HMPREF9011_00541 [Bacteroides sp. 3_1_40A]
Length = 359
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + G ++ GDFN S + ++ E +
Sbjct: 262 QADSIARLVAGYKGGG--IIVCGDFNDSPISYT-HRVVGEGLND------AFVESGNGFG 312
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N L+ + + K S H P+
Sbjct: 313 ISYNQNHFYF------RIDNILLSKNLKSYRCTVDNTI----KSSDHYPIW 353
>gi|290989393|ref|XP_002677322.1| predicted protein [Naegleria gruberi]
gi|284090929|gb|EFC44578.1| predicted protein [Naegleria gruberi]
Length = 484
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 12/121 (9%), Positives = 36/121 (29%), Gaps = 17/121 (14%)
Query: 7 EWLKKWADQKIK-TGIPFVIAGDFNRK---INSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
E + + + + +++GD N + + D W +L + +
Sbjct: 53 EAINSFINAVLTCKDEHIILSGDLNIDTQNPTTTREKDWIWIL----EMLKLTEFKTPNY 108
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + + + + + +V T H P ++ +F+
Sbjct: 109 TWIRRSQGTLIR-----SRPDHIFVSKNIRVVKEVIMTPLTTN----DHVPFYLDLEFKS 159
Query: 123 G 123
Sbjct: 160 N 160
>gi|296084426|emb|CBI24985.3| unnamed protein product [Vitis vinifera]
Length = 431
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 31/128 (24%), Gaps = 22/128 (17%)
Query: 13 ADQKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIR---------FPQ 57
+KI + GD N ++ W + L Q
Sbjct: 290 VPEKILDHERVIWFGDLNYRIALSYSETRKLLEENAWDALLDKDQLKIEREAGRVFKGWQ 349
Query: 58 EKESTCNVIKRNKSSLD-------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
E + + +++ D R + + Q S+ S
Sbjct: 350 EGKIYFAPTYKYRNNSDTYAGDTTKSKTKRRTPAWCDRILWHGHGIRQLSYIRGESQFSD 409
Query: 111 HCPLTIEY 118
H P+ +
Sbjct: 410 HRPVCATF 417
>gi|257415059|ref|ZP_05592053.1| endonuclease/Exonuclease/phosphatase [Enterococcus faecalis
AR01/DG]
gi|257156887|gb|EEU86847.1| endonuclease/Exonuclease/phosphatase [Enterococcus faecalis
ARO1/DG]
Length = 198
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 95 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 141
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 142 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 198
>gi|254881208|ref|ZP_05253918.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|254834001|gb|EET14310.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
Length = 359
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + G ++ GDFN S + ++ E +
Sbjct: 262 QADSIARLVAGYKGGG--IIVCGDFNDSPISYT-HRVVGEGLND------AFVESGNGFG 312
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N L+ + + K S H P+
Sbjct: 313 ISYNQNHFYF------RIDNILLSKNLKSYRCTVDNTI----KSSDHYPIW 353
>gi|253563360|ref|ZP_04840817.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251947136|gb|EES87418.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
Length = 285
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 25/107 (23%), Gaps = 4/107 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I P ++ GDFN + ++
Sbjct: 182 KEIAGTHPAMMTGDFNVSEEWEAYKTITSNEFVLKDAWKIAGKQSGEN-YTFHDFGRVP- 239
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYDF 120
+ + + S T + LS H + +F
Sbjct: 240 -VAEREKIDFIFVTPQIKVADAEIISSAITDSTYLSDHNAHLADLEF 285
>gi|212692207|ref|ZP_03300335.1| hypothetical protein BACDOR_01703 [Bacteroides dorei DSM 17855]
gi|237711516|ref|ZP_04541997.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237726027|ref|ZP_04556508.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|265752941|ref|ZP_06088510.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|212665084|gb|EEB25656.1| hypothetical protein BACDOR_01703 [Bacteroides dorei DSM 17855]
gi|229435835|gb|EEO45912.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229454211|gb|EEO59932.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263236127|gb|EEZ21622.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 359
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + G ++ GDFN S + ++ E +
Sbjct: 262 QADSIARLVAGYKGGG--IIVCGDFNDSPISYT-HRVVGEGLND------AFVESGNGFG 312
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N L+ + + K S H P+
Sbjct: 313 ISYNQNHFYF------RIDNILLSKNLKSYRCTVDNTI----KSSDHYPIW 353
>gi|151553571|gb|AAI48925.1| Deoxyribonuclease I-like 1 [Bos taurus]
Length = 316
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 10/99 (10%), Positives = 26/99 (26%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
++ GDFN S+ + + T + + +
Sbjct: 187 VILLGDFNADCTSLTKKRLDDLVLRTQAGFHWAIADGVDTTVRASTHCTYDRIVLHGEHL 246
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ L + + +S H P+ ++
Sbjct: 247 QSLLRGAAAFDFPQSFGLTEQEALNISDHYPVEVDLALS 285
>gi|150003564|ref|YP_001298308.1| hypothetical protein BVU_0993 [Bacteroides vulgatus ATCC 8482]
gi|149931988|gb|ABR38686.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
Length = 359
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + G ++ GDFN S + ++ E +
Sbjct: 262 QADSIARLVAGYKGGG--IIVCGDFNDSPISYT-HRVVGEGLND------AFVESGNGFG 312
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N L+ + + K S H P+
Sbjct: 313 ISYNQNHFYF------RIDNILLSKNLKSYRCTVDNTI----KSSDHYPIW 353
>gi|157160265|ref|YP_001457583.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli HS]
gi|170020854|ref|YP_001725808.1| endonuclease/exonuclease/phosphatase [Escherichia coli ATCC 8739]
gi|188495117|ref|ZP_03002387.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli 53638]
gi|194438459|ref|ZP_03070549.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli 101-1]
gi|253774207|ref|YP_003037038.1| endonuclease/exonuclease/phosphatase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160867|ref|YP_003043975.1| putative DNase [Escherichia coli B str. REL606]
gi|300929408|ref|ZP_07144877.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 187-1]
gi|312970864|ref|ZP_07785043.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli 1827-70]
gi|157065945|gb|ABV05200.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli HS]
gi|169755782|gb|ACA78481.1| Endonuclease/exonuclease/phosphatase [Escherichia coli ATCC 8739]
gi|188490316|gb|EDU65419.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli 53638]
gi|194422683|gb|EDX38680.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli 101-1]
gi|242376582|emb|CAQ31291.1| predicted DNase [Escherichia coli BL21(DE3)]
gi|253325251|gb|ACT29853.1| Endonuclease/exonuclease/phosphatase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972768|gb|ACT38439.1| predicted DNase [Escherichia coli B str. REL606]
gi|253976988|gb|ACT42658.1| predicted DNase [Escherichia coli BL21(DE3)]
gi|300462608|gb|EFK26101.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 187-1]
gi|310336625|gb|EFQ01792.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli 1827-70]
gi|323963037|gb|EGB58608.1| endonuclease/Exonuclease/phosphatase [Escherichia coli H489]
gi|332342122|gb|AEE55456.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 253
Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ + R LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNASASAPTALPLQTWR--HLSDHAPLSAEIHL 253
>gi|326332555|ref|ZP_08198824.1| endonuclease/exonuclease/phosphatase family protein
[Nocardioidaceae bacterium Broad-1]
gi|325949647|gb|EGD41718.1| endonuclease/exonuclease/phosphatase family protein
[Nocardioidaceae bacterium Broad-1]
Length = 271
Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 35/121 (28%), Gaps = 21/121 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L + + G V+AGD N +S + + GL T
Sbjct: 171 REQAERLAAFVEATRAPGDLVVVAGDLNLLPDS-----ATFDVLRRIGLQDLVGTADTRT 225
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ Y R L+ + ++ + +S H +E D
Sbjct: 226 SS----------YLKPVRHASYLLVSDPEAVAGFRVRTEPE----VSDHR--ILELDLTP 269
Query: 123 G 123
Sbjct: 270 A 270
>gi|224069930|ref|XP_002193896.1| PREDICTED: deoxyribonuclease I-like 2 [Taeniopygia guttata]
Length = 330
Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+ GDFN + + +D ++ + + + + V K + + V
Sbjct: 230 DNLMFLGDFNADCSYVQPSDWSSIRLRTNDIFKWLIPDS-ADTTVGKSDCAYDRIVVCGN 288
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
K ++ NS I ++ ++ + L S H P+ ++
Sbjct: 289 KLKRSILSNSAGIYNFQRALQLDQEEALAVSDHYPVEVKL 328
>gi|269862537|ref|XP_002650877.1| exodeoxyribonuclease III [Enterocytozoon bieneusi H348]
gi|220065478|gb|EED43178.1| exodeoxyribonuclease III [Enterocytozoon bieneusi H348]
Length = 239
Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 22/96 (22%), Gaps = 5/96 (5%)
Query: 28 DFNRKINSIGDTDDFWQKM-DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFL 86
D M +E + + D
Sbjct: 120 DLYDHFMEKRQRQWLANLMKTFVDTFRVGNKELFQYTCWDRVLRHRESNLGTRIDYILLK 179
Query: 87 IDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + I S + S HCP+T+E D +
Sbjct: 180 TTSHYKIKSAEI----RPDIYGSDHCPVTLEIDIGE 211
>gi|162453061|ref|YP_001615428.1| hypothetical protein sce4785 [Sorangium cellulosum 'So ce 56']
gi|161163643|emb|CAN94948.1| probable secreted protein [Sorangium cellulosum 'So ce 56']
Length = 286
Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 30/128 (23%), Gaps = 12/128 (9%)
Query: 5 QGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTD---DFWQKMDPDGLLIRFPQEKE 60
Q + ++ G+P ++ GDFN + + F Q +
Sbjct: 159 QVAAVADIVMREAPMEGLPPIVVGDFNAQPEATEIRFMKGLHALNQKSVYFADTFDQTGK 218
Query: 61 STCNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSI------VSYDQSDLDTRRSKLSTHC 112
RN + R + + S + S H
Sbjct: 219 GPGFTFDPVRNPFAAITNEYPRRIDYVFVRGPDAQGRGKPLSSRVVFEEIRNGVAASDHY 278
Query: 113 PLTIEYDF 120
+ E
Sbjct: 279 GVLSEISM 286
>gi|120556472|ref|YP_960823.1| endonuclease/exonuclease/phosphatase [Marinobacter aquaeolei VT8]
gi|120326321|gb|ABM20636.1| Endonuclease/exonuclease/phosphatase [Marinobacter aquaeolei VT8]
Length = 286
Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 22/123 (17%)
Query: 2 LSQQGEWLK-KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
LS+ + + + ++I + V+ GD N + P
Sbjct: 180 LSKSAQQKQLGFIREQIASYRHVVLMGDMNAHAEQLLTRTPL-------KETDLIPLPDT 232
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ R ++ + L+ S I + +S H P+ ++
Sbjct: 233 AHSFPSWR---------PEKALDHILVSPSLEIRRSEVVSYP-----VSDHLPIAMDVAL 278
Query: 121 EKG 123
KG
Sbjct: 279 PKG 281
>gi|322834267|ref|YP_004214294.1| Endonuclease/exonuclease/phosphatase [Rahnella sp. Y9602]
gi|321169468|gb|ADW75167.1| Endonuclease/exonuclease/phosphatase [Rahnella sp. Y9602]
Length = 253
Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 31/119 (26%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L W + G P ++AGDFN +D
Sbjct: 150 RQAQLKMLADWVNA-FPQGEPVLVAGDFNDWRQKANRPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + + N+ + LS H PL+ E
Sbjct: 197 FTRAKGRPARTFPVRMPLLRLDRIYVKNANASAPAVLP--LRNWRHLSDHAPLSAEIHL 253
>gi|294790372|ref|ZP_06755530.1| exodeoxyribonuclease III [Scardovia inopinata F0304]
gi|294458269|gb|EFG26622.1| exodeoxyribonuclease III [Scardovia inopinata F0304]
Length = 276
Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 12/130 (9%), Positives = 30/130 (23%), Gaps = 21/130 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDP 48
+ + + + + P + GDFN I
Sbjct: 148 DAYRAYLTE-LDEAKPILACGDFNVAHQEIDLAHPASNHHSAGFTDEERQKFTALLGAGF 206
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + +L+ N + + +DT +
Sbjct: 207 TDTYRYLHPNQAGAYTWWAQRAVTSKANNSGWRIDYWLVSNRLNSRVKQSTMIDTGDRR- 265
Query: 109 STHCPLTIEY 118
H P+ ++
Sbjct: 266 -DHAPILLDI 274
>gi|297569596|ref|YP_003690940.1| Endonuclease/exonuclease/phosphatase [Desulfurivibrio alkaliphilus
AHT2]
gi|296925511|gb|ADH86321.1| Endonuclease/exonuclease/phosphatase [Desulfurivibrio alkaliphilus
AHT2]
Length = 248
Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 28/105 (26%), Gaps = 11/105 (10%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ P ++ GDFN +E + S
Sbjct: 155 LAPDDPCIVGGDFNDWFTR------LSPMFTEVMDFKCASSHQEDFQSPYLTYPSFSPTG 208
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ F+IV + + + S H P+ + D++
Sbjct: 209 G----LDKIFVRGPFAIVKRQRCRMQISKI-ASDHLPVLADLDWQ 248
>gi|226940627|ref|YP_002795701.1| Endonuclease/exonuclease/phosphatase [Laribacter hongkongensis
HLHK9]
gi|226715554|gb|ACO74692.1| Endonuclease/exonuclease/phosphatase [Laribacter hongkongensis
HLHK9]
Length = 237
Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 14/116 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L ++ ++ + G ++AGDFN +F ++ +
Sbjct: 131 RKQMEQLSRYIERAVPRGNGLILAGDFNDWR--RRANHEFADELGLQEVHEAVH------ 182
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R+ S + + IV + + LS H PL+ E
Sbjct: 183 ----GRHGKSFPARLPILTLDRIYVR-GLQIVGAEVLRGAP-WATLSDHLPLSAEL 232
>gi|302336142|ref|YP_003801349.1| Endonuclease/exonuclease/phosphatase [Olsenella uli DSM 7084]
gi|301319982|gb|ADK68469.1| Endonuclease/exonuclease/phosphatase [Olsenella uli DSM 7084]
Length = 427
Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 15/131 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRK--------INSIGDTDDFWQKMDPD--- 49
+ ++Q L + G + GD+N + D D D
Sbjct: 299 VRARQLSMLGAALSAERAAGNYVIAGGDWNHALCGSLELYPSQQQVPDWVATLDDEDLPE 358
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
G + E + + F++ ++ S + + S
Sbjct: 359 GFSVVRAGNLEEVASCRGDDIPYERDVTYTVTVDGFVVSDNVSATATNIDT----GFATS 414
Query: 110 THCPLTIEYDF 120
H P+ + +
Sbjct: 415 DHNPVLLSFAL 425
>gi|294673423|ref|YP_003574039.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
ruminicola 23]
gi|294471767|gb|ADE81156.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
ruminicola 23]
Length = 358
Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 32/123 (26%), Gaps = 19/123 (15%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
M+++ G+ A P ++ GDFN S K+D
Sbjct: 252 MIARSGQA-NVLAQDMRNCERPIIVCGDFNDVPYSYVYNTMLGDKVD------------- 297
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ D +F +SY S S H P+ +
Sbjct: 298 GFTECGSGFMYTFRGGKKKVRIDYIFHDKTFLGLSY----YKRELSY-SDHNPVFSKIQI 352
Query: 121 EKG 123
+
Sbjct: 353 PQD 355
>gi|326927929|ref|XP_003210140.1| PREDICTED: deoxyribonuclease gamma-like [Meleagris gallopavo]
Length = 286
Score = 41.7 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 12/120 (10%), Positives = 33/120 (27%), Gaps = 23/120 (19%)
Query: 4 QQGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + D ++ F+ GDFN + + ++ + + +
Sbjct: 161 REIDELYDVYLDIKQHWDTKNFIFMGDFNAGCSYVPRKHWKNIRLRTNLEFVWLISDTND 220
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
T + + +S H P+ E++ +
Sbjct: 221 TTVRRSTSCPYDRPRYLGVSL-------------------PREALGVSDHFPV--EFELK 259
>gi|269865912|ref|XP_002652091.1| exodeoxyribonuclease III [Enterocytozoon bieneusi H348]
gi|220063177|gb|EED41965.1| exodeoxyribonuclease III [Enterocytozoon bieneusi H348]
Length = 218
Score = 41.7 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 14/95 (14%), Positives = 22/95 (23%), Gaps = 5/95 (5%)
Query: 28 DFNRKINSIGDTDDFWQKM-DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFL 86
D M +E + + D
Sbjct: 120 DLYDHFMEKRQRQWLANLMKTFVDTFRIGNKELFQYTCWDRVLRHRESNLGTRIDYILLK 179
Query: 87 IDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + I S + S HCP+T+E D E
Sbjct: 180 TTSHYKIKSAEI----RPDIYGSDHCPVTLEIDME 210
>gi|52840714|ref|YP_094513.1| endonuclease/exonuclease/phosphatase family protein [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|52627825|gb|AAU26566.1| endonuclease/exonuclease/phosphatase family protein [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
Length = 257
Score = 41.7 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 14/117 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + L + + P ++AGDFN + + + + + + +
Sbjct: 154 EQCKALIQRIKDVVPKNEPLIMAGDFNDWRH--VISKILAENLGIEEAFVALEGQHA--- 208
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R+ ++ + + V+ Q LS H PL ++
Sbjct: 209 ----RSFPAIKPALCVDRVYFRGMK--VQEVACLQGKPWR---MLSDHLPLYARFEL 256
>gi|60729594|pir||JC7951 deoxyribonuclease I (EC 3.1.21.1) - common carp
Length = 279
Score = 41.7 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 8/119 (6%)
Query: 5 QGEWLKKWA---DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L Q++ T ++ GDFN + + ++D ++ D + +
Sbjct: 163 EIDALHDVVLDTRQRLNTN-NIMLLGDFNAGCSYVSNSDWSKIRLRTDQSYTWLIPDS-A 220
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
V N V D + S + + Q+ ++ L S H P ++
Sbjct: 221 DTTVTHTNCPYDR-IVATSDMMKGVSAGSAQVFDFMQAHGLSQSWGLAVSDHFPAEVQL 278
>gi|54293461|ref|YP_125876.1| hypothetical protein lpl0510 [Legionella pneumophila str. Lens]
gi|53753293|emb|CAH14740.1| hypothetical protein lpl0510 [Legionella pneumophila str. Lens]
Length = 257
Score = 41.7 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 14/117 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + L + + P ++AGDFN + + + + + + +
Sbjct: 154 EQCKALIQRIKDVVPKNEPLIMAGDFNDWRH--VISKILAENLGIEEAFVALEGQHA--- 208
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R+ ++ + + V+ Q LS H PL ++
Sbjct: 209 ----RSFPAIKPALCVDRVYFRGMK--VQEVACLQGKPWR---MLSDHLPLYARFEL 256
>gi|13473422|ref|NP_104989.1| hypothetical protein mlr4014 [Mesorhizobium loti MAFF303099]
gi|14024171|dbj|BAB50775.1| mlr4014 [Mesorhizobium loti MAFF303099]
Length = 289
Score = 41.7 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 26/117 (22%), Gaps = 20/117 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTD-----------DFWQKMDPDGLLIRFPQEKESTC 63
++ FV GDFN S + D + +
Sbjct: 179 PELPHPEAFVAMGDFNMLAGSPEYVELAGRPDHQFGMPLTADFAVDAAVRLNVTGDDLAS 238
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLSTHCPLTIEY 118
V ++ + + S + T S H P+ E
Sbjct: 239 WVDPKDPA---NTSRHKRIDYVFTSASPARSLQHLWVDHQATG----SDHLPVWAEL 288
>gi|21388714|dbj|BAC00811.1| DNase I [Cyprinus carpio]
Length = 279
Score = 41.7 bits (96), Expect = 0.038, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 8/119 (6%)
Query: 5 QGEWLKKWA---DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + L Q++ T ++ GDFN + + ++D ++ D + +
Sbjct: 163 EIDALHDVVLDTRQRLNTN-NIMLLGDFNAGCSYVSNSDWSKIRLRTDQSYTWLIPDS-A 220
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
V N V D + S + + Q+ ++ L S H P ++
Sbjct: 221 DTTVTHTNCPYDR-IVATSDMMKGVSAGSAQVFDFMQAHGLSQSWGLAVSDHFPAEVQL 278
>gi|310790394|gb|EFQ25927.1| endonuclease/Exonuclease/phosphatase [Glomerella graminicola
M1.001]
Length = 307
Score = 41.4 bits (95), Expect = 0.038, Method: Composition-based stats.
Identities = 11/121 (9%), Positives = 21/121 (17%), Gaps = 10/121 (8%)
Query: 6 GEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + T P + GDFN N D +
Sbjct: 189 IKVVVSRIQAVQSTYGPLGVTLTGDFNSDPNGSAYRVLANGGFVEDLYNKAPRVGSLTGT 248
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS----YDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + +S H P+ +
Sbjct: 249 YTTFDTS----LQNSASRIDFIWLGPQSANKYSVQKIEIKSNIASGVVISDHRPVVGDVT 304
Query: 120 F 120
Sbjct: 305 L 305
>gi|259909393|ref|YP_002649749.1| hypothetical protein EpC_27660 [Erwinia pyrifoliae Ep1/96]
gi|224965015|emb|CAX56545.1| Endonuclease/exonuclease/phosphatase family protein, YafD [Erwinia
pyrifoliae Ep1/96]
gi|283479466|emb|CAY75382.1| UPF0294 protein yafD [Erwinia pyrifoliae DSM 12163]
Length = 268
Score = 41.4 bits (95), Expect = 0.038, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 21/109 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q + P ++AGDFN Q+++ R +E R K+
Sbjct: 176 EQIVHHQGPVIMAGDFNA---------WSRQRINALYRFAREMGLREVRFTDDHRRKAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + S + + S H PL +E+DF
Sbjct: 227 RPLDFIFYRGMGVAEASVLVT------------RASDHNPLLVEFDFNS 263
>gi|71014651|ref|XP_758742.1| hypothetical protein UM02595.1 [Ustilago maydis 521]
gi|46098532|gb|EAK83765.1| hypothetical protein UM02595.1 [Ustilago maydis 521]
Length = 1178
Score = 41.4 bits (95), Expect = 0.038, Method: Composition-based stats.
Identities = 12/117 (10%), Positives = 25/117 (21%), Gaps = 17/117 (14%)
Query: 19 TGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI---------- 66
+ + GDFN + + ++ + V
Sbjct: 827 SHDHVIWLGDFNYRIDLTNDAVRSMLAREDLVGLYSRDQLHRSKDAGEVFPGYEEGSITF 886
Query: 67 -----KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
N S + + F + Q + S H P+ +
Sbjct: 887 APTYKYDNGSDQYDSSEKQRIPAWTDRILFRGLDLRQLSYSRAELRTSDHRPVYASF 943
>gi|317061856|ref|ZP_07926341.1| dnase I-like protein dhp2 precursor [Fusobacterium sp. D12]
gi|313687532|gb|EFS24367.1| dnase I-like protein dhp2 precursor [Fusobacterium sp. D12]
Length = 260
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 7/123 (5%)
Query: 4 QQGEWLK--KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ E +K + + +IAGDFN + D + D + +
Sbjct: 142 EAAELVKVYDYFQDRDIKENDILIAGDFNLSASDKAF-DSLYNHRDNITCTLDPKTKTTV 200
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
S+ D I + S IV + R K+S H P+ IE + +
Sbjct: 201 GTK---GLSSAYDNIFISKKYTTEYTGKS-GIVDFTNKKYGEARKKISDHLPIYIEVNTD 256
Query: 122 KGN 124
K +
Sbjct: 257 KDD 259
>gi|292898571|ref|YP_003537940.1| endonuclease/exonuclease/phosphatase [Erwinia amylovora ATCC 49946]
gi|291198419|emb|CBJ45526.1| putative endonuclease/exonuclease/phosphatase [Erwinia amylovora
ATCC 49946]
Length = 268
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 21/109 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q I P ++AGDFN Q+++ R +E R K+
Sbjct: 176 EQIIHHQGPVIMAGDFNA---------WSRQRINALYRFAREMGLREVRFTDDHRRKAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + S + + S H PL +E++F+
Sbjct: 227 RPLDFIFYRGMDVTEASVLVT------------RASDHNPLLVEFNFDS 263
>gi|158428909|pdb|2J63|A Chain A, Crystal Structure Of Ap Endonuclease Lmap From Leishmania
Major
gi|158428910|pdb|2J63|B Chain B, Crystal Structure Of Ap Endonuclease Lmap From Leishmania
Major
Length = 467
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 25/114 (21%), Gaps = 27/114 (23%)
Query: 23 FVIAGDFNRKINSIGDT----------------------DDFWQKMDPDGLLIRFPQ-EK 59
F+ AGD N + Q+ + + +
Sbjct: 350 FIWAGDLNVAERDYDRYYAGTFKSMQECSGFAPEERMSFRETMQRTNSVDIFRQLYPQAG 409
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+R F++ + + SY S HCP
Sbjct: 410 PVYSFWSQRINGRPRNLGW--RLDYFVVSS--RLASYVVDCFPMPTVMGSDHCP 459
>gi|150866582|ref|XP_001386231.2| hypothetical protein PICST_33238 [Scheffersomyces stipitis CBS
6054]
gi|149387838|gb|ABN68202.2| conserved hypothetical protein [Scheffersomyces stipitis CBS 6054]
Length = 388
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 13/155 (8%), Positives = 31/155 (20%), Gaps = 34/155 (21%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---DDFWQKMDPDGLLIRFPQEK 59
+ E + + P + GDFN + D ++
Sbjct: 235 KKSAELIVD--KMENFNDNPSFLCGDFNTQPKDQPYHVLSDAGFKDSRKLVDYDYSYGHS 292
Query: 60 ESTCN--------------VIKRNKSSLD---------------YFVIDRDNKNFLIDNS 90
+ + + N +
Sbjct: 293 TTFTGFNKEKEDSSIIDYIWSPYFSQGNFGNDTSPVKDYEDEVANEMNNYYNLEHHLVYD 352
Query: 91 FSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
I + + S H P+ Y+ + ++
Sbjct: 353 IVIKQFGILHNYFKGFYFSDHRPVVASYEITRTHL 387
>gi|157867185|ref|XP_001682147.1| AP-endonuclease; apurinic/apyrimidinic endonuclease-redox protein
[Leishmania major]
gi|2393785|gb|AAD11457.1| AP-Endonuclease [Leishmania major]
gi|68125599|emb|CAJ03609.1| apurinic/apyrimidinic endonuclease-redox protein [Leishmania major
strain Friedlin]
Length = 447
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 25/114 (21%), Gaps = 27/114 (23%)
Query: 23 FVIAGDFNRKINSIGDT----------------------DDFWQKMDPDGLLIRFPQ-EK 59
F+ AGD N + Q+ + + +
Sbjct: 330 FIWAGDLNVAERDYDRYYAGTFKSMQECSGFAPEERMSFRETMQRTNSVDIFRQLYPQAG 389
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+R F++ + + SY S HCP
Sbjct: 390 PVYSFWSQRINGRPRNLGW--RLDYFVVSS--RLASYVVDCFPMPTVMGSDHCP 439
>gi|308049464|ref|YP_003913030.1| endonuclease/exonuclease/phosphatase [Ferrimonas balearica DSM
9799]
gi|307631654|gb|ADN75956.1| Endonuclease/exonuclease/phosphatase [Ferrimonas balearica DSM
9799]
Length = 401
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 14/132 (10%)
Query: 6 GEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI---------- 53
++L+ A Q+ + FVI GD+N + ++ +
Sbjct: 270 ADYLEDDAGQRGGLAADTRFVIVGDYNASPSEGQSRPGAINQLLNHPRVNASERPRSTGG 329
Query: 54 -RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS-YDQSDLDTRRSKLSTH 111
+ + ++ +DY + + F V + S L R+ S H
Sbjct: 330 ELHSPDNPNGPYHTAYWRAQVDYVLPSAFGFEPVRSGVFWPVDGLELSRLIADRNASSDH 389
Query: 112 CPLTIEYDFEKG 123
+ +E +
Sbjct: 390 RLVWMELRLTEE 401
>gi|301383299|ref|ZP_07231717.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato Max13]
gi|302063704|ref|ZP_07255245.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato K40]
Length = 382
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 33/131 (25%), Gaps = 15/131 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKI-------------NSIGDTDDFWQKMDPDG 50
+Q + D+ G P++I GDFN D++
Sbjct: 251 EQIAATENLLDKLEGGGTPWLIGGDFNLLPLGQYQRLPEQQRHGYAADSELHALWEKYPM 310
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + DR S VS DT +S
Sbjct: 311 IPNNTESSGTDRSQWLTHFPNDSRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--ISD 368
Query: 111 HCPLTIEYDFE 121
H P+ +
Sbjct: 369 HLPVIGRFLLP 379
>gi|241760900|ref|ZP_04758989.1| Endonuclease/exonuclease/phosphatase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|260753130|ref|YP_003226023.1| endonuclease/exonuclease/phosphatase [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|283856234|ref|YP_162080.2| endonuclease/exonuclease/phosphatase [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241374519|gb|EER63980.1| Endonuclease/exonuclease/phosphatase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|258552493|gb|ACV75439.1| Endonuclease/exonuclease/phosphatase [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|283775229|gb|AAV88969.2| Endonuclease/exonuclease/phosphatase [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 239
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 34/121 (28%), Gaps = 20/121 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q ++ ++ +P VI GDFN+ D + + D ++
Sbjct: 138 RRQVAFIVDRLR-NLQRDLPTVIMGDFNQWRR----RDGCLRLLPDDFSVLPT------- 185
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+S +I + + R + S H P+ +
Sbjct: 186 -------GASFPAQHPLVGLDRIIIAPQIRYLECGVHNTPLAR-QASDHLPVWAKLALSP 237
Query: 123 G 123
Sbjct: 238 D 238
>gi|254788112|ref|YP_003075541.1| endonuclease/exonuclease/phosphatase family protein [Teredinibacter
turnerae T7901]
gi|237685110|gb|ACR12374.1| endonuclease/exonuclease/phosphatase family protein [Teredinibacter
turnerae T7901]
Length = 250
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 17/119 (14%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L K + + P V+AGDFN + + + + ++
Sbjct: 148 QLKRLSKLVNS-LPADEPVVVAGDFND-------WRLKAENLLFNESRLV-----DAYTG 194
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR-RSKLSTHCPLTIEYDFEK 122
+ S + + + Y+ L S++S H PL +E D ++
Sbjct: 195 HQGKPARSFPVAMPLLRLDRIYLRCN---SRYEIERLHRSPWSRISDHKPLMVELDIQE 250
>gi|52785878|ref|YP_091707.1| hypothetical protein BLi02127 [Bacillus licheniformis ATCC 14580]
gi|52348380|gb|AAU41014.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
Length = 243
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 19/111 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q ++L ++ ++ +P ++ GDFN K S G + D Q +
Sbjct: 146 KQTDFL---IEKVQESDLPVIVTGDFNMKPYSRGWKKVAEKLADLWDE----SQYGQGFT 198
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ R + + SF + + + S H PL
Sbjct: 199 HPSHRPRR---------RLDYIFLSPSFHVSAAEIV---AVDPNASDHLPL 237
>gi|68070969|ref|XP_677398.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56497502|emb|CAH97339.1| conserved hypothetical protein [Plasmodium berghei]
Length = 404
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 31/153 (20%), Gaps = 35/153 (22%)
Query: 4 QQGEWLKKWA-----DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
+Q E L KW I P GDFN + F++++ + L
Sbjct: 242 KQIEELTKWVYHGIPSTFINKYEPLFFVGDFNIRYIKDE---KFFKEITSNKYLNCVVTN 298
Query: 59 KESTCNVIK------RNKSSLDYFVIDRDNKNFLIDNS---------------------F 91
R L+ F
Sbjct: 299 NTLETTYDSSINDYCRYVEDDFEHKYVDTLDYILVSKDSNVKTIVPQTAVQRDYKPISIF 358
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ S H P+ + N
Sbjct: 359 KTMLCCIPYQSINIHHASDHFPIYATFKLPNDN 391
>gi|322391715|ref|ZP_08065182.1| RgfB protein [Streptococcus peroris ATCC 700780]
gi|321145425|gb|EFX40819.1| RgfB protein [Streptococcus peroris ATCC 700780]
Length = 272
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 2/106 (1%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ P ++AGDFN G ++ + + S
Sbjct: 168 LKELNKPLLLAGDFNNPAGQEGYQAILASPLELQDAFEVAKERRGSYTVP-PEIDGWKGN 226
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
I S + ++S H L E ++
Sbjct: 227 S-EPLRIDYVFTTKDIQIESLHVVFDGKQNPQVSDHYGLQAELSWK 271
>gi|297160401|gb|ADI10113.1| hypothetical protein SBI_06993 [Streptomyces bingchenggensis BCW-1]
Length = 255
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 28/130 (21%), Gaps = 17/130 (13%)
Query: 5 QGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDT-------DDFWQKMDPDGLLIRFP 56
Q L ++ ++ G P V+ GD+N +S +
Sbjct: 122 QVTALARFIAERRGAGPFPPVVTGDYNAWPDSDEMRLLGGCRTAPAVPGQVLLDVWEYAD 181
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS--------FSIVSYDQSDLDTRRSKL 108
N F + S+ +D
Sbjct: 182 PAAPWAT-WDAANPYVARTFEPSVRIDYIHVGPPGPDGLGHVRSVRRAGDGPVDEVGVWP 240
Query: 109 STHCPLTIEY 118
S H + E
Sbjct: 241 SDHAAVVAEL 250
>gi|269862096|ref|XP_002650703.1| exodeoxyribonuclease III [Enterocytozoon bieneusi H348]
gi|220065747|gb|EED43354.1| exodeoxyribonuclease III [Enterocytozoon bieneusi H348]
Length = 239
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 22/96 (22%), Gaps = 5/96 (5%)
Query: 28 DFNRKINSIGDTDDFWQKM-DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFL 86
D M +E + + D
Sbjct: 120 DLYDHFMEKRQRQWLANLMKTFVDTFRIGNKELFQYTCWDRVLRHRESNLGTRIDYILLK 179
Query: 87 IDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + I S + S HCP+T+E D +
Sbjct: 180 TTSHYKIKSAEI----RPDIYGSDHCPVTLEIDIGE 211
>gi|149926631|ref|ZP_01914891.1| predicted endonuclease / exonuclease / phosphatase family protein
[Limnobacter sp. MED105]
gi|149824560|gb|EDM83776.1| predicted endonuclease / exonuclease / phosphatase family protein
[Limnobacter sp. MED105]
Length = 264
Score = 41.4 bits (95), Expect = 0.039, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 11/116 (9%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + + G+P V+AGDFN Q + + ++ + + +
Sbjct: 156 RQASKLIEHVGTHVPAGMPLVVAGDFNDWQ--RRLGPILQQGLKAEEVMPLDKKNRLARV 213
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + +KLS H P ++ +
Sbjct: 214 GSFPSRFPVLGLDRVFARGFKVHEATVLHG---------PAWAKLSDHAPFVVDLE 260
>gi|319944723|ref|ZP_08018987.1| hypothetical protein HMPREF0551_1835 [Lautropia mirabilis ATCC
51599]
gi|319741972|gb|EFV94395.1| hypothetical protein HMPREF0551_1835 [Lautropia mirabilis ATCC
51599]
Length = 484
Score = 41.4 bits (95), Expect = 0.040, Method: Composition-based stats.
Identities = 22/147 (14%), Positives = 43/147 (29%), Gaps = 28/147 (19%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKIN--------SIGDTDDFWQKMDPDGLLI 53
L Q L+ W D+++ G +I+GDFNR + + GD + +
Sbjct: 338 LQSQVPALEGWLDRQMAAGHAVLISGDFNRDLRQELRQGLPARGDGSPAAAPIRTSDEMR 397
Query: 54 -----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR---- 104
+ + +S Y + R + + + +
Sbjct: 398 RVASVLPELDDDQPRGTRLTLVASGPYRKLARCHHHIDVFLLSHNLDAWLRTPPEDLRVQ 457
Query: 105 -----------RSKLSTHCPLTIEYDF 120
R + S HCP ++
Sbjct: 458 VVPFEAPLSLERPRPSDHCPHVLQLPL 484
>gi|271967525|ref|YP_003341721.1| hypothetical protein Sros_6252 [Streptosporangium roseum DSM 43021]
gi|270510700|gb|ACZ88978.1| hypothetical protein Sros_6252 [Streptosporangium roseum DSM 43021]
Length = 298
Score = 41.4 bits (95), Expect = 0.040, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 7/115 (6%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L K G V GD N + +++ ++ T
Sbjct: 187 RKQVEEL---LAAAAKPGYRAVFGGDLNLAPPDSRQSTAAKRRILAPVYAAYAECDQNGT 243
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ K + + + ++L S+ + + S H P+ ++
Sbjct: 244 RDGRWTEKHVREDGSVSKRKLDYLFAPRGSVTRCHV----AQDAAPSDHRPIYVK 294
>gi|66047531|ref|YP_237372.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
syringae B728a]
gi|63258238|gb|AAY39334.1| Endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
syringae B728a]
Length = 380
Score = 41.4 bits (95), Expect = 0.040, Method: Composition-based stats.
Identities = 20/132 (15%), Positives = 32/132 (24%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP------ 56
+Q + D+ G P++I GDFN Q++
Sbjct: 248 QKQVAATETQLDKLESGGTPWLIGGDFNLLPLGQYQRLPEQQRLGYAADSELHQLWDKYP 307
Query: 57 -------QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + DR S VS DT +S
Sbjct: 308 MIPNNAESSGIDRSKWLTHFPNDSRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--IS 365
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 366 DHLPVIGRFLLP 377
>gi|305666513|ref|YP_003862800.1| hypothetical protein FB2170_09596 [Maribacter sp. HTCC2170]
gi|88708780|gb|EAR01015.1| hypothetical protein FB2170_09596 [Maribacter sp. HTCC2170]
Length = 314
Score = 41.4 bits (95), Expect = 0.040, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 35/122 (28%), Gaps = 20/122 (16%)
Query: 2 LSQQGEWLKKWADQKIKT-GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
L +Q E + + +I GDFN S + D QEK
Sbjct: 212 LQKQLEQ-AELVKEHGNNVDYKKIICGDFNNTQFSNVYNSIKGEMNDS-------FQEKG 263
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + L+D I S+ +LS H P+ +
Sbjct: 264 SGFGNTYNF------RFLPFRIDFILMDKEIEITSHKN-----FNIQLSDHEPVMASFRL 312
Query: 121 EK 122
++
Sbjct: 313 KE 314
>gi|332089000|gb|EGI94112.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
boydii 5216-82]
Length = 253
Score = 41.4 bits (95), Expect = 0.040, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G P ++ GDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGEPVLVEGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|284040838|ref|YP_003390768.1| endonuclease/exonuclease/phosphatase [Spirosoma linguale DSM 74]
gi|283820131|gb|ADB41969.1| Endonuclease/exonuclease/phosphatase [Spirosoma linguale DSM 74]
Length = 1015
Score = 41.4 bits (95), Expect = 0.040, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 7/121 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKIN-SIGDTDD--FWQKMDPDGLLIRFPQEK 59
Q LK D + ++AGD+N ++ SI + + + + +
Sbjct: 716 KQDIIDLKAELDANY-GNVNLIMAGDYNDDVDQSIAAGNPSSYANFVSDPNYTVISSELS 774
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
S CN ++D+ + + + + S + V + S H P +
Sbjct: 775 SSNCNTDANFTDAIDHITVSNELASSYVAGSVASVRPAVVN---YALTTSDHYPTFARFT 831
Query: 120 F 120
Sbjct: 832 L 832
>gi|242068041|ref|XP_002449297.1| hypothetical protein SORBIDRAFT_05g007330 [Sorghum bicolor]
gi|241935140|gb|EES08285.1| hypothetical protein SORBIDRAFT_05g007330 [Sorghum bicolor]
Length = 133
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
D F +D G+ ++ D ++ + +++ +
Sbjct: 25 DAFRDTLDDCGMTNLSFTNDP-FTWW----NNNHDDQNYVHESLDRAVEDGAWRHRFPAF 79
Query: 100 DLDTRRSKLSTHCPLTIEYDFEK 122
+ K S H P+ +E + +
Sbjct: 80 KVTKGDPKHSDHRPVIVETELGE 102
>gi|224177590|gb|ACN38810.1| MIP06315p [Drosophila melanogaster]
Length = 441
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 36/147 (24%), Gaps = 29/147 (19%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI------- 53
+ ++QG L ++ Q P ++ GDFN + + G
Sbjct: 264 LRNEQGRDLIRFVKQ-FAGDTPLLLCGDFNAEPVEPIYATILGCDLLRLGSAYADVKLDR 322
Query: 54 --RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR------ 105
+ V K K Y + + V Y L +
Sbjct: 323 EEILHPNADVGEFVAKSMKREPPYTTWKIREEGEECH-TIDYVFYTPDRLKIKNCLDFPA 381
Query: 106 ------------SKLSTHCPLTIEYDF 120
S H L +++
Sbjct: 382 GEQIGKNRTPSFQYPSDHFSLVCDFEL 408
>gi|168704312|ref|ZP_02736589.1| endonuclease/exonuclease/phosphatase family protein [Gemmata
obscuriglobus UQM 2246]
Length = 295
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 29/114 (25%), Gaps = 26/114 (22%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L + P ++AGDFN + + ++ C
Sbjct: 205 QAQQLLDFVG-----DRPAILAGDFNNRPENASIK---------------LIRDTGKFCG 244
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + ++ DT S H PL +
Sbjct: 245 AFDGPPTFFEGTR-AERLDYIFAPAGWELLESRVVADDT-----SDHRPLVCRF 292
>gi|161078191|ref|NP_001097746.1| curled, isoform D [Drosophila melanogaster]
gi|158030219|gb|ABW08640.1| curled, isoform D [Drosophila melanogaster]
Length = 642
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 36/147 (24%), Gaps = 29/147 (19%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI------- 53
+ ++QG L ++ Q P ++ GDFN + + G
Sbjct: 465 LRNEQGRDLIRFVKQ-FAGDTPLLLCGDFNAEPVEPIYATILGCDLLRLGSAYADVKLDR 523
Query: 54 --RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR------ 105
+ V K K Y + + V Y L +
Sbjct: 524 EEILHPNADVGEFVAKSMKREPPYTTWKIREEGEECH-TIDYVFYTPDRLKIKNCLDFPA 582
Query: 106 ------------SKLSTHCPLTIEYDF 120
S H L +++
Sbjct: 583 GEQIGKNRTPSFQYPSDHFSLVCDFEL 609
>gi|115913980|ref|XP_784420.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
gi|115941123|ref|XP_001188757.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 596
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 30/105 (28%), Gaps = 7/105 (6%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+++ + + D N + I D+ + F ++E+
Sbjct: 243 EEQELSDEERHVHDDSNIDVEDIPSKDNLF-----VDSFRYFHPKRENAFTCWSTLTG-A 296
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+++ + + D+ + S HCP+
Sbjct: 297 RQTNYGTRIDYIIVNERLCVDELTECDIMP-EFEGSDHCPVKATL 340
>gi|51092216|gb|AAT94521.1| GH03334p [Drosophila melanogaster]
Length = 526
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 36/147 (24%), Gaps = 29/147 (19%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI------- 53
+ ++QG L ++ Q P ++ GDFN + + G
Sbjct: 349 LRNEQGRDLIRFVKQ-FAGDTPLLLCGDFNAEPVEPIYATILGCDLLRLGSAYADVKLDR 407
Query: 54 --RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR------ 105
+ V K K Y + + V Y L +
Sbjct: 408 EEILHPNADVGEFVAKSMKREPPYTTWKIREEGEECH-TIDYVFYTPDRLKIKNCLYFPA 466
Query: 106 ------------SKLSTHCPLTIEYDF 120
S H L +++
Sbjct: 467 GEQIGKNRTPSFQYPSDHFSLVCDFEL 493
>gi|161078189|ref|NP_001097745.1| curled, isoform C [Drosophila melanogaster]
gi|21654879|gb|AAK85704.1| nocturin [Drosophila melanogaster]
gi|158030218|gb|ABW08639.1| curled, isoform C [Drosophila melanogaster]
Length = 449
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 36/147 (24%), Gaps = 29/147 (19%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI------- 53
+ ++QG L ++ Q P ++ GDFN + + G
Sbjct: 272 LRNEQGRDLIRFVKQ-FAGDTPLLLCGDFNAEPVEPIYATILGCDLLRLGSAYADVKLDR 330
Query: 54 --RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR------ 105
+ V K K Y + + V Y L +
Sbjct: 331 EEILHPNADVGEFVAKSMKREPPYTTWKIREEGEECH-TIDYVFYTPDRLKIKNCLDFPA 389
Query: 106 ------------SKLSTHCPLTIEYDF 120
S H L +++
Sbjct: 390 GEQIGKNRTPSFQYPSDHFSLVCDFEL 416
>gi|161078193|ref|NP_001097747.1| curled, isoform E [Drosophila melanogaster]
gi|73853348|gb|AAZ86746.1| RE65127p [Drosophila melanogaster]
gi|108383940|gb|ABF85759.1| IP15605p [Drosophila melanogaster]
gi|158030220|gb|ABW08641.1| curled, isoform E [Drosophila melanogaster]
Length = 446
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 36/147 (24%), Gaps = 29/147 (19%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI------- 53
+ ++QG L ++ Q P ++ GDFN + + G
Sbjct: 269 LRNEQGRDLIRFVKQ-FAGDTPLLLCGDFNAEPVEPIYATILGCDLLRLGSAYADVKLDR 327
Query: 54 --RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR------ 105
+ V K K Y + + V Y L +
Sbjct: 328 EEILHPNADVGEFVAKSMKREPPYTTWKIREEGEECH-TIDYVFYTPDRLKIKNCLDFPA 386
Query: 106 ------------SKLSTHCPLTIEYDF 120
S H L +++
Sbjct: 387 GEQIGKNRTPSFQYPSDHFSLVCDFEL 413
>gi|329120066|ref|ZP_08248736.1| endonuclease/exonuclease/phosphatase [Neisseria bacilliformis ATCC
BAA-1200]
gi|327463597|gb|EGF09915.1| endonuclease/exonuclease/phosphatase [Neisseria bacilliformis ATCC
BAA-1200]
Length = 250
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 32/118 (27%), Gaps = 14/118 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + ++ I P ++AGDFN + + + + +
Sbjct: 147 KQYVAIFEYVTAYIPPDAPLILAGDFNDWRHKSPLN--IGRTLGLTEVFLDR-------- 196
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + + S LS H PL+ +
Sbjct: 197 --RGTLPKTFPARLPVLSLDRIYTRHLEILDARLHSGEPW--LYLSDHLPLSATLRLK 250
>gi|315922569|ref|ZP_07918809.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313696444|gb|EFS33279.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 314
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 36/117 (30%), Gaps = 10/117 (8%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ E + + G+P ++ DFN++I+S G+ + S
Sbjct: 206 KSMEVIVNKMSELNPEGLPMLLTADFNKQIDSDIFN----------GVKTFMTNVRLSAP 255
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + ++ + + +S H P+ + ++
Sbjct: 256 VTDSKYSYTGFGTANPYIVDHIFCTGFKALKFETIDKVYQNITYISDHYPIVGKLEY 312
>gi|301307682|ref|ZP_07213639.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
gi|300834356|gb|EFK64969.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
Length = 325
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 31/119 (26%), Gaps = 14/119 (11%)
Query: 18 KTGIPFVIAGDFNR----------KINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
T +++ GDFN + ++ +
Sbjct: 205 ATNEYWMMMGDFNSRNRTDNAIYRYPEDSPKFLTQDYIAQETPYVDVIAKKYPNEFKTTT 264
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSY----DQSDLDTRRSKLSTHCPLTIEYDFEK 122
++ +DY + + + Y + S H P+ I++D K
Sbjct: 265 GKEARIDYVYCTQPLFDIIQYADVITDEYTKPVRDPKELSNFWWPSDHRPIIIDFDLSK 323
>gi|281421494|ref|ZP_06252493.1| endonuclease/Exonuclease/phosphatase family protein [Prevotella
copri DSM 18205]
gi|281404566|gb|EFB35246.1| endonuclease/Exonuclease/phosphatase family protein [Prevotella
copri DSM 18205]
Length = 335
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 15/119 (12%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ ++AGDFN +S + + + ++ ++T +S LD
Sbjct: 214 LNDSARIIVAGDFNDYSDSPALCYLYQHHLVNISVGVKGSHGAKATYRWHGDWRS-LDQI 272
Query: 77 VIDRDNKNFLIDNSFSIVSY-DQSDLDTRRSKL-------------STHCPLTIEYDFE 121
+ + + + + D K S H PL ++ E
Sbjct: 273 LFSPSLSRLKMSCQIGDLPFLLEDDEKYGGKKPFRTYLGPRYLGGYSDHLPLVAKFKIE 331
>gi|110346936|ref|YP_665754.1| endonuclease/exonuclease/phosphatase [Mesorhizobium sp. BNC1]
gi|110283047|gb|ABG61107.1| Endonuclease/exonuclease/phosphatase [Chelativorans sp. BNC1]
Length = 326
Score = 41.4 bits (95), Expect = 0.041, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 30/120 (25%), Gaps = 17/120 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L + L+ P V+AGD+N F++ + E
Sbjct: 224 LRDLAQALRS-----EPHDTPVVVAGDWNTAS-----WSPFFKDLLSSTGYR--TTESRW 271
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + ++ + + L S H P+
Sbjct: 272 WPLPTRFSIRFGSWTQLGTPIDRIVLTPAVGL-----DSLAMGPKFGSNHLPVIARLTLP 326
>gi|319781575|ref|YP_004141051.1| endonuclease/exonuclease/phosphatase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167463|gb|ADV11001.1| Endonuclease/exonuclease/phosphatase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 300
Score = 41.4 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 34/123 (27%), Gaps = 9/123 (7%)
Query: 10 KKWADQKIKTGIPF--VIAGDFNRKINSIGDTD-----DFWQKMDPDGLLIRFPQEKEST 62
+ W + + P + GDFN + S + + +
Sbjct: 178 RNWTSGEAEPENPLAAIWMGDFNMEPGSAEYRRIVGSTPYHRGAAYHSGFVDAAAVAGEP 237
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ ++D + R + + F+ S H PL ++ D E
Sbjct: 238 VPDFHTHVKTIDGRLAKRRLDHCFVGGMFAGRVRSIRADI--DEVASDHFPLRVDIDLET 295
Query: 123 GNV 125
+
Sbjct: 296 PGI 298
>gi|302919090|ref|XP_003052788.1| hypothetical protein NECHADRAFT_78136 [Nectria haematococca mpVI
77-13-4]
gi|256733728|gb|EEU47075.1| hypothetical protein NECHADRAFT_78136 [Nectria haematococca mpVI
77-13-4]
Length = 653
Score = 41.4 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 15/150 (10%), Positives = 33/150 (22%), Gaps = 41/150 (27%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIG----------------------------- 37
+ L + G ++ GD N +++
Sbjct: 192 QALDVRIRNLVADGKQVILTGDLNVVRSAMDSTNVAEMLRKEDISLDDWLNMPVRRIFNQ 251
Query: 38 ---------DTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID 88
+ D+ ++ L F E+ K + L
Sbjct: 252 LIFEGKVVGERDEGREEPVLWDLCRCFHPERAGMNTC-WDTKRNTRPANNGSRIDYILCS 310
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + S HCP+ +
Sbjct: 311 DGIKDWFTFSNIQE--GLMGSDHCPVFATF 338
>gi|229010104|ref|ZP_04167318.1| Sphingomyelinase C [Bacillus mycoides DSM 2048]
gi|228751237|gb|EEM01049.1| Sphingomyelinase C [Bacillus mycoides DSM 2048]
Length = 333
Score = 41.4 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 33/138 (23%), Gaps = 21/138 (15%)
Query: 4 QQGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIR 54
+Q + ++++ + I +I GD N NS + ++ +
Sbjct: 197 KQLQEIQEFIKNKNIPNNEYVLIGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHT 256
Query: 55 FPQEKESTCNVIKRNKSS-----------LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + S D+ L S T
Sbjct: 257 ATWDATTNSIAKYNFPDSPAEYLDYIITSKDHANPSYIENKVLQSKSPQWTVTSWLKEYT 316
Query: 104 RRSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 317 YNDY-SDHYPVEATISMK 333
>gi|171780197|ref|ZP_02921101.1| hypothetical protein STRINF_01985 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281545|gb|EDT46980.1| hypothetical protein STRINF_01985 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 168
Score = 41.4 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 43/143 (30%), Gaps = 27/143 (18%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
L + E W +K+A ++ P + GD+N I +
Sbjct: 29 LKRLAERQLWDEKYAQYLAELDQKKPVLATGDYNVAHQEIDLANPNSNRRSAGFTDEERA 88
Query: 42 FWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + G F + +R+K+S +L N +
Sbjct: 89 GFTNLLAKGFTDTFRHLHGNIPNVYSWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKVTK 147
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+D+ + H P+ +E D
Sbjct: 148 SEMIDSGARQ--DHTPILLEIDL 168
>gi|289628537|ref|ZP_06461491.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289649841|ref|ZP_06481184.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330870432|gb|EGH05141.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 380
Score = 41.4 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 37/132 (28%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD--PDGLLIRFPQEKE 60
+Q +K D+ G P++I GDFN Q++ D L ++
Sbjct: 248 QKQVVATEKQLDKLESGGTPWLIGGDFNLLPLGQYQRLPKEQRLGYAADSELHELWEKYP 307
Query: 61 -----------STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + DR S VS DT +S
Sbjct: 308 MIPDNAESSGIDRGKWLTHFPNDSRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--IS 365
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 366 DHLPVIGRFLLP 377
>gi|256618819|ref|ZP_05475665.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis ATCC
4200]
gi|256598346|gb|EEU17522.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis ATCC
4200]
Length = 254
Score = 41.4 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 24/99 (24%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N +
Sbjct: 157 AQYPTLLMGDFNAESGE-EVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + + S H PL E
Sbjct: 211 LEEIDYIYVKSWQVQQTAS-LTDSIDGRFPSDHFPLEAE 248
>gi|239945508|ref|ZP_04697445.1| putative phospholipase [Streptomyces roseosporus NRRL 15998]
gi|239991973|ref|ZP_04712637.1| putative phospholipase [Streptomyces roseosporus NRRL 11379]
gi|291448965|ref|ZP_06588355.1| sphingomyelinase C [Streptomyces roseosporus NRRL 15998]
gi|291351912|gb|EFE78816.1| sphingomyelinase C [Streptomyces roseosporus NRRL 15998]
Length = 326
Score = 41.4 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 38/129 (29%), Gaps = 14/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMD---PDGLLIRFP 56
M S+Q + + + D K I V+AGDFN +S +
Sbjct: 194 MRSRQFKQMDAFLDAKNIPASEQVVVAGDFNVDGHSAEYASFLADAGLTTPDSRTGHTYS 253
Query: 57 QEKESTCNVIKRNK----SSLDYFVIDRDNKNF--LIDNSFSIVSYDQSDLDTRRSK--- 107
+ +R LD+ + + ++ S + +
Sbjct: 254 FDTRDNSIASERYPDDPREDLDHVLHRTGHAKPTGWKNDVIKEQSAPWTVSSWGKKYTYT 313
Query: 108 -LSTHCPLT 115
LS H P+
Sbjct: 314 NLSDHYPVI 322
>gi|21909832|ref|NP_664100.1| putative 3'-exo-deoxyribonuclease [Streptococcus pyogenes MGAS315]
gi|21904018|gb|AAM78903.1| putative 3'-exo-deoxyribonuclease [Streptococcus pyogenes MGAS315]
Length = 275
Score = 41.4 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 38/143 (26%), Gaps = 33/143 (23%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQK 45
+Q W K+AD ++ P + GD+N I + +
Sbjct: 141 DRQI-WDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPSSNRRSPGFTDEERQGFTN 199
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N +
Sbjct: 200 LLARGFTDTFRHVHGDIPHVYTWWAQRSKTSKIN-NTGWRIDYWLASNRI------VDKV 252
Query: 102 DTRRSKLS----THCPLTIEYDF 120
S H P+ ++ D
Sbjct: 253 KRSEMISSGERQDHTPILLDIDL 275
>gi|50122266|ref|YP_051433.1| hypothetical protein ECA3344 [Pectobacterium atrosepticum SCRI1043]
gi|49612792|emb|CAG76242.1| endonuclease/exonuclease/phosphatase family protein [Pectobacterium
atrosepticum SCRI1043]
Length = 262
Score = 41.4 bits (95), Expect = 0.042, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 21/114 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L +Q + P ++AGDFN Q+++ +E
Sbjct: 169 KQLAAIGEQLLHHQGPAIMAGDFNA---------WSQQRINALNRFAARMGLQEVHFVDD 219
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+R K+ + +S + + S H PL +E+
Sbjct: 220 QRRKAFGRPLDFVFYRDMTVNQSSVLVT------------QASDHNPLLVEFSL 261
>gi|146420181|ref|XP_001486048.1| hypothetical protein PGUG_01719 [Meyerozyma guilliermondii ATCC
6260]
Length = 310
Score = 41.4 bits (95), Expect = 0.043, Method: Composition-based stats.
Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 8/93 (8%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN + + Q D + + + + +
Sbjct: 222 ILVGDFNSQPHQEAYKTLSTQLKDTSCNCQQRRGPEHTITGFKRG--------EQETSID 273
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+I+ ++ + + S H P+T
Sbjct: 274 FIWTTPGINILHHEVKNHEFNGHYCSDHRPVTA 306
>gi|326477375|gb|EGE01385.1| SacI domain and endonuclease/exonuclease/phosphatase [Trichophyton
equinum CBS 127.97]
Length = 1157
Score = 41.4 bits (95), Expect = 0.043, Method: Composition-based stats.
Identities = 10/101 (9%), Positives = 23/101 (22%), Gaps = 3/101 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P + +GD + + + + N + +
Sbjct: 808 RPLIESGDIDVLYQHDQLNLQMVAGLAFQYYMEGPVTFPPTY---RYDNGTDEYDTSEKQ 864
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + Q T K S H P+ + +
Sbjct: 865 RIPAWCDRILWRGRILRQLAYTTAPLKFSDHRPVYATFKCD 905
>gi|325273997|ref|ZP_08140156.1| endonuclease/exonuclease/phosphatase [Pseudomonas sp. TJI-51]
gi|324100886|gb|EGB98573.1| endonuclease/exonuclease/phosphatase [Pseudomonas sp. TJI-51]
Length = 284
Score = 41.4 bits (95), Expect = 0.043, Method: Composition-based stats.
Identities = 14/112 (12%), Positives = 33/112 (29%), Gaps = 22/112 (19%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ + I V+ GD N + + L + PQ + + + +
Sbjct: 185 YIRELIGGYRHQVLMGDMNTHAADLLEHSPL------RDLGLVAPQVEATFPSWRPQR-- 236
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+ +S ++ + +S H P+ +E
Sbjct: 237 ---------CLDHILLSSSLTLERVEVLAQP-----ISDHLPVAVEIRLPDA 274
>gi|42523889|ref|NP_969269.1| hypothetical protein Bd2451 [Bdellovibrio bacteriovorus HD100]
gi|39576096|emb|CAE80262.1| hypothetical protein Bd2451 [Bdellovibrio bacteriovorus HD100]
Length = 433
Score = 41.4 bits (95), Expect = 0.043, Method: Composition-based stats.
Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 9/123 (7%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L +W + + +++GDFN ++S+ D +
Sbjct: 248 QVMDLLRWRMKHQ--DLKMLLSGDFNANVDSVERGFVMATLATRDAMED-AMGGYPKKGY 304
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDN------SFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ L + D+ N + ++ + T R LS H + +E+
Sbjct: 305 CTYCARNPLGWLFSDQVFDYIFYSNVGQSATTLQVLDGQVNMQGTPRRPLSDHYGVRVEF 364
Query: 119 DFE 121
+
Sbjct: 365 SVD 367
>gi|292487323|ref|YP_003530195.1| hypothetical protein EAMY_0837 [Erwinia amylovora CFBP1430]
gi|291552742|emb|CBA19787.1| UPF0294 protein yafD [Erwinia amylovora CFBP1430]
Length = 261
Score = 41.4 bits (95), Expect = 0.043, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 36/109 (33%), Gaps = 21/109 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q I P ++AGDFN Q+++ R +E R K+
Sbjct: 169 EQIIHHQGPVIMAGDFNA---------WSRQRINALYRFAREMGLREVRFTDDHRRKAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + S + + S H PL +E++F+
Sbjct: 220 RPLDFIFYRGMDVTEASVLVT------------RASDHNPLLVEFNFDS 256
>gi|91214649|ref|ZP_01251622.1| hypothetical protein P700755_17329 [Psychroflexus torquis ATCC
700755]
gi|91187076|gb|EAS73446.1| hypothetical protein P700755_17329 [Psychroflexus torquis ATCC
700755]
Length = 343
Score = 41.4 bits (95), Expect = 0.043, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 31/120 (25%), Gaps = 20/120 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L T +P ++ D N S + + +
Sbjct: 244 QEQAILLS---KSFSSTSLPKIVCMDMNNTAFSYVASQLLKHNLKDAFVE---------- 290
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ D+ + + S ++ KLS H P+ ++ +
Sbjct: 291 --SGYGLGKTFDFDFLPFRIDVIFNEKSLKNANFKN-----YSLKLSDHYPIMASFNLSE 343
>gi|292492991|ref|YP_003528430.1| endonuclease/exonuclease/phosphatase [Nitrosococcus halophilus Nc4]
gi|291581586|gb|ADE16043.1| Endonuclease/exonuclease/phosphatase [Nitrosococcus halophilus Nc4]
Length = 248
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 25/108 (23%), Gaps = 10/108 (9%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
++ + P + GD N + + GL F
Sbjct: 150 LNRLVDPSSPLLFMGDLND-------HYLPLKVLREAGLTDCFTALNRIPHVTRPTFP-- 200
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ L ++ D D S H PL Y +
Sbjct: 201 -THDHTPEVVDWMLHRGPLQPMTCDVVDFFVEDVAPSDHKPLLTTYRW 247
>gi|283781932|ref|YP_003372687.1| endonuclease/exonuclease/phosphatase [Pirellula staleyi DSM 6068]
gi|283440385|gb|ADB18827.1| Endonuclease/exonuclease/phosphatase [Pirellula staleyi DSM 6068]
Length = 290
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 34/108 (31%), Gaps = 4/108 (3%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
++ + G ++ GD N ++ W+K + + T
Sbjct: 186 MEKDLSAGRSMLLMGDLNHTPDTKEYE--LWKKAGWQDTFTQAGAGEGLTIKSD-TPDRR 242
Query: 73 LDYFVIDRDNKNFLIDNSFSIV-SYDQSDLDTRRSKLSTHCPLTIEYD 119
+DY + + + ++ ++ D LS H P ++
Sbjct: 243 IDYILAAGPIAKTIKSSRPLFEGAFRVNNADAESFALSDHLPQLAIFE 290
>gi|261349310|gb|ACX71215.1| surface-anchored DNA nuclease [Streptococcus suis]
Length = 183
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 9/112 (8%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + + V+ GDFN + M L+ +
Sbjct: 79 AQTIADFTKAGLAQNPNANIVMLGDFNDYEFTKTIEILETGGM---ANLVSRHDASDRFS 135
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
N SLD ++ + + + + S + S H PL
Sbjct: 136 YFYNGNNQSLDNMLVSTNLLDRYAFDMVHVNSA----FMEEHGRASDHDPLL 183
>gi|251781878|ref|YP_002996180.1| putative 3'-exo-deoxyribonuclease [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|242390507|dbj|BAH80966.1| putative 3'-exo-deoxyribonuclease [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|323126691|gb|ADX23988.1| exodeoxyribonuclease III [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 275
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 32/124 (25%), Gaps = 22/124 (17%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRFPQEKE 60
++ P + GD+N I + + + G F
Sbjct: 155 ELDAQKPVLATGDYNVAHKEIDLANPGSNRRSPGFTDEERQGFTNLLARGFTDTFRHLHG 214
Query: 61 S----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+R+K+S +L N + + + H P+ +
Sbjct: 215 DIPNVYTWWAQRSKTSKIN-NTGWRIDYWLTSNRLVDKINRSEMISSGERQ--DHTPILL 271
Query: 117 EYDF 120
+ D
Sbjct: 272 DIDL 275
>gi|222637450|gb|EEE67582.1| hypothetical protein OsJ_25113 [Oryza sativa Japonica Group]
Length = 915
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 28/107 (26%), Gaps = 7/107 (6%)
Query: 17 IKTGIPFVIAGDFNR--KINSIGDTDDFWQKMDPDGLLIRFPQE----KESTCNVIKRNK 70
+ P+++AGDFN Q RN
Sbjct: 358 MNPAQPWLMAGDFNEILVAAEKQGGRPKCQAQMDKFRDTLADCGLIDIGFEGDMFTWRNN 417
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
S + I + + + V + + + S H P+ I
Sbjct: 418 SHTEEGYIREHLDRAVANQEWR-VKFPSFRVVNGDPRHSDHRPVIIT 463
>gi|190345694|gb|EDK37621.2| hypothetical protein PGUG_01719 [Meyerozyma guilliermondii ATCC
6260]
Length = 310
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 8/93 (8%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN + + Q D + + + + +
Sbjct: 222 ILVGDFNSQPHQEAYKTLSTQLKDTSCNCQQRRGPEHTITGFKRG--------EQETSID 273
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+I+ ++ + + S H P+T
Sbjct: 274 FIWTTPGINILHHEVKNHEFNGHYCSDHRPVTA 306
>gi|158425166|ref|YP_001526458.1| endonuclease [Azorhizobium caulinodans ORS 571]
gi|158332055|dbj|BAF89540.1| endonuclease [Azorhizobium caulinodans ORS 571]
Length = 370
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 30/131 (22%), Gaps = 14/131 (10%)
Query: 3 SQQGEWLKKWADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + + Q+I G + GDFN S D + +
Sbjct: 241 KAQAARVAEIYKQRIADGYSHIAVLGDFNDTPGSAAL-APLLSGTDLKDVFGHASFDNGG 299
Query: 62 TCNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR----------SKLS 109
+ +DY ++ + + R S
Sbjct: 300 YPGTYGLCNADNKIDYILLSPELFGKVTAGGVFRKGAWPGSRPKRWDVYPEVARPADAAS 359
Query: 110 THCPLTIEYDF 120
H + ++
Sbjct: 360 DHSAVWVDLAL 370
>gi|149248640|ref|XP_001528707.1| hypothetical protein LELG_01227 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448661|gb|EDK43049.1| hypothetical protein LELG_01227 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 390
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 37/133 (27%), Gaps = 20/133 (15%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC-- 63
+ + ++ Q I P +++GDFN K N+ +K+ +
Sbjct: 257 MKLIMQYVKQ-IPNTHPTILSGDFNSKSNNQVYKLLAAEKLVDTFSEKLGKSNNDPMTLL 315
Query: 64 ---------------NVIKRNKSSLDYFVIDRDNKNFLIDNS-FSIVSYDQSDLDTR-RS 106
+ + D + S I+ ++ D
Sbjct: 316 LELSKTPKSPKSPTLPTLPTFSGFGNATGYTIDYIWNMSPESGIKILGHEVDDNLFDQGF 375
Query: 107 KLSTHCPLTIEYD 119
+ S H P+ +
Sbjct: 376 RFSDHRPVIASFS 388
>gi|115473321|ref|NP_001060259.1| Os07g0613900 [Oryza sativa Japonica Group]
gi|113611795|dbj|BAF22173.1| Os07g0613900 [Oryza sativa Japonica Group]
Length = 1453
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 28/107 (26%), Gaps = 7/107 (6%)
Query: 17 IKTGIPFVIAGDFNR--KINSIGDTDDFWQKMDPDGLLIRFPQE----KESTCNVIKRNK 70
+ P+++AGDFN Q RN
Sbjct: 395 MNPAQPWLMAGDFNEILVAAEKQGGRPKCQAQMDKFRDTLADCGLIDIGFEGDMFTWRNN 454
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
S + I + + + V + + + S H P+ I
Sbjct: 455 SHTEEGYIREHLDRAVANQEWR-VKFPSFRVVNGDPRHSDHRPVIIT 500
>gi|77166097|ref|YP_344622.1| endonuclease/exonuclease/phosphatase [Nitrosococcus oceani ATCC
19707]
gi|254435463|ref|ZP_05048970.1| endonuclease/exonuclease/phosphatase family [Nitrosococcus oceani
AFC27]
gi|76884411|gb|ABA59092.1| Endonuclease/exonuclease/phosphatase [Nitrosococcus oceani ATCC
19707]
gi|207088574|gb|EDZ65846.1| endonuclease/exonuclease/phosphatase family [Nitrosococcus oceani
AFC27]
Length = 288
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 28/108 (25%), Gaps = 21/108 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + V+ GD N +++S + + R K
Sbjct: 171 DFISSLVHNHPYVVVMGDLNCQLHSPELRALLRKTGLKA-------PVTKIATYPSWRPK 223
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+D+ ++ + + V S H PL E
Sbjct: 224 RHIDHILVSPSLEVIQVGALAHAV--------------SDHLPLATEI 257
>gi|331233136|ref|XP_003329229.1| hypothetical protein PGTG_10281 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309308219|gb|EFP84810.1| hypothetical protein PGTG_10281 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 693
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 13/122 (10%), Positives = 28/122 (22%), Gaps = 19/122 (15%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK----------------- 59
I + + AGDFN +I+ + Q + + ++
Sbjct: 139 IASHENVIWAGDFNYRIDGGLQNNAVRQAVVDENYAELLAADQLLEHMAVQAVFPKYTEG 198
Query: 60 --ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + + D K S H P+
Sbjct: 199 AINFPPTYKYDVGTDRYDTSEKMRIPAWTDRILYQGSDLNLIDYSRAELKASDHRPVYAT 258
Query: 118 YD 119
+
Sbjct: 259 LE 260
>gi|289450353|ref|YP_003474896.1| endonuclease/exonuclease/phosphatase family protein [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289184900|gb|ADC91325.1| endonuclease/exonuclease/phosphatase family protein [Clostridiales
genomosp. BVAB3 str. UPII9-5]
Length = 372
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 41/130 (31%), Gaps = 12/130 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFN-RKINSIGD-------TDDFWQKMDPDGLLIRFP 56
Q + L+++ ++ + G V GD+N + D +F
Sbjct: 234 QSKMLQEFLQKEYEKGNYVVAGGDWNQVLPGAPDIPVKNTNFWHPPKLAADDFAPDWKFA 293
Query: 57 QEKESTCNVIKRNK-SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + N + + FL+ + IV +D+ K + H P+
Sbjct: 294 VDTKKYTNRLNDQPIKGRENDAQYFSLDGFLVSPNVEIVDVAVADV---GFKYADHLPVR 350
Query: 116 IEYDFEKGNV 125
+ + V
Sbjct: 351 LVIKLKNPAV 360
>gi|260574370|ref|ZP_05842374.1| Endonuclease/exonuclease/phosphatase [Rhodobacter sp. SW2]
gi|259023266|gb|EEW26558.1| Endonuclease/exonuclease/phosphatase [Rhodobacter sp. SW2]
Length = 238
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 29/119 (24%), Gaps = 20/119 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L + + P ++ GD N W+ + ++
Sbjct: 139 QAQALLAKLNTLER--RPTLLMGDLNE-----------WRDTGSAAMGHFARHFTPASPR 185
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+I + ++ D R + S H P+ G
Sbjct: 186 ASY------PARYPLLPLDRMMICDQGQLLDIATHDSPLAR-RASDHLPIKARLRLGAG 237
>gi|313202112|ref|YP_004040770.1| endonuclease/exonuclease/phosphatase [Methylovorus sp. MP688]
gi|312441428|gb|ADQ85534.1| Endonuclease/exonuclease/phosphatase [Methylovorus sp. MP688]
Length = 250
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L+ + I P VIAGDFN S G ++ +
Sbjct: 147 KQFGALRDYIHAVIPEDAPLVIAGDFNDWRLSAGHQ--VMDGLNMREVFEHA-------- 196
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + F+I S S H L+ +
Sbjct: 197 ---HGKPARSFPSMFPLFRLDRIYVRGFNIHSAHVHGGPRTALT-SDHAALSAVLE 248
>gi|229822156|ref|YP_002883682.1| Endonuclease/exonuclease/phosphatase [Beutenbergia cavernae DSM
12333]
gi|229568069|gb|ACQ81920.1| Endonuclease/exonuclease/phosphatase [Beutenbergia cavernae DSM
12333]
Length = 437
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 17/126 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-----TDDFWQKMDPD---GLLIR 54
+Q + D ++ P V+AGD N + + + D +
Sbjct: 211 KEQLRIVLDHVDARV----PSVLAGDLNIWTTDVPTQPYSQNNLMQSWIAEDHLADTWRQ 266
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ + R +F +V+ S +D S H +
Sbjct: 267 VNDPGAGPTMTASYGRPESPHPD--RRIDYVFATPAFDVVAGHVSLVDR---FASDHLGV 321
Query: 115 TIEYDF 120
++
Sbjct: 322 VMDLRL 327
>gi|163814394|ref|ZP_02205783.1| hypothetical protein COPEUT_00545 [Coprococcus eutactus ATCC 27759]
gi|158450029|gb|EDP27024.1| hypothetical protein COPEUT_00545 [Coprococcus eutactus ATCC 27759]
Length = 382
Score = 41.4 bits (95), Expect = 0.044, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 14/128 (10%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKIN----------SIGDTDDFWQKMDP-DGLLI 53
Q + L + G + GDFN+ + S +
Sbjct: 258 QTKMLADILQAETDKGNYVIAGGDFNQTFSNTDISAYPQQSDELWAPSLIDISEFGNDFT 317
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
TC + ++ D F++ ++ SI S + +L+ + S H P
Sbjct: 318 CITDSSVPTCRSLDKSYDDADEKFQFYVIDGFIVSSNISIKSIETVNLNFQN---SDHNP 374
Query: 114 LTIEYDFE 121
+ +E
Sbjct: 375 IKLEVILN 382
>gi|325119989|emb|CBZ55542.1| hypothetical protein NCLIV_059670 [Neospora caninum Liverpool]
Length = 455
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 32/125 (25%), Gaps = 11/125 (8%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--FWQKMDPDGLLIRFPQEKESTCN 64
E + ++ Q K P V GD N I +D F + P
Sbjct: 247 ERMLEFVTQLKK---PLVWVGDLNCAPEDIDLSDPEQFRSVIHESADGTIDPDNIGQAGC 303
Query: 65 VIKRNKSSL----DYFVIDRDNKNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPLTIEY 118
+ + K+ + + S HCP+ + +
Sbjct: 304 TDAERRRFRAILERGWDQCMCLKDCFGGSGPRGMLRGLGMRLDHIANFFGSDHCPVLVRF 363
Query: 119 DFEKG 123
++
Sbjct: 364 KEKET 368
>gi|295085529|emb|CBK67052.1| Metal-dependent hydrolase [Bacteroides xylanisolvens XB1A]
Length = 611
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 15/99 (15%), Positives = 23/99 (23%), Gaps = 17/99 (17%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P +AGD N + S + K I EK + +
Sbjct: 167 KPLFLAGDMNAEPESD------FIKELQKDFQILSNPEKHTYPAPDPK-----------E 209
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S S H P+ +E
Sbjct: 210 TIDYIAASKQNATGFAVISARVVNEPMASDHRPILVELR 248
>gi|269122882|ref|YP_003305459.1| Endonuclease/exonuclease/phosphatase [Streptobacillus moniliformis
DSM 12112]
gi|268314208|gb|ACZ00582.1| Endonuclease/exonuclease/phosphatase [Streptobacillus moniliformis
DSM 12112]
Length = 598
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 9/119 (7%)
Query: 5 QGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+G+++ + + ++ GD N S + ++ + E
Sbjct: 487 EGKYINNFVKDILSKDDKATVIVLGDMNDFEFSKTTKNINGDELVDVIS---LLPKNERY 543
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
V + +LD + DN V S+ + S H P+ I++ +
Sbjct: 544 TYVYQGASQTLDNIM----INKKYKDNVNIDVIRVNSEFLKEQGSFSDHDPIFIQFKVD 598
>gi|262406033|ref|ZP_06082583.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294646465|ref|ZP_06724105.1| Ser/Thr phosphatase family protein [Bacteroides ovatus SD CC 2a]
gi|294806878|ref|ZP_06765703.1| Ser/Thr phosphatase family protein [Bacteroides xylanisolvens SD CC
1b]
gi|262356908|gb|EEZ05998.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292638200|gb|EFF56578.1| Ser/Thr phosphatase family protein [Bacteroides ovatus SD CC 2a]
gi|294445907|gb|EFG14549.1| Ser/Thr phosphatase family protein [Bacteroides xylanisolvens SD CC
1b]
Length = 611
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 15/99 (15%), Positives = 23/99 (23%), Gaps = 17/99 (17%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P +AGD N + S + K I EK + +
Sbjct: 167 KPLFLAGDMNAEPESD------FIKELQKDFQILSNPEKHTYPAPDPK-----------E 209
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S S H P+ +E
Sbjct: 210 TIDYIAASKQNATGFAVISARVVNEPMASDHRPILVELR 248
>gi|237717266|ref|ZP_04547747.1| metallophosphoesterase [Bacteroides sp. D1]
gi|229443249|gb|EEO49040.1| metallophosphoesterase [Bacteroides sp. D1]
Length = 608
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 15/99 (15%), Positives = 23/99 (23%), Gaps = 17/99 (17%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P +AGD N + S + K I EK + +
Sbjct: 164 KPLFLAGDMNAEPESD------FIKELQKDFQILSNPEKHTYPAPDPK-----------E 206
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S S H P+ +E
Sbjct: 207 TIDYIAASKQNATGFAVISARVVNEPMASDHRPILVELR 245
>gi|254513404|ref|ZP_05125469.1| alkaline phosphatase [Rhodobacteraceae bacterium KLH11]
gi|221532408|gb|EEE35404.1| alkaline phosphatase [Rhodobacteraceae bacterium KLH11]
Length = 2116
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 38/125 (30%), Gaps = 13/125 (10%)
Query: 3 SQQGEWL--KKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR--FP 56
++ + L + D + + GD N + T+D D L
Sbjct: 1824 EREAQALTINEVVDGLLANDPDANIAVLGDLNTFDFTDELTEDLPGVGDEQVLTNLIELA 1883
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ E+ + N +LD+ + + V + D+ S H P+
Sbjct: 1884 EGDEAYSFNFQGNSQALDHIFVTDSLL---EGANVDFVHVNVDFADS----ASDHEPIVA 1936
Query: 117 EYDFE 121
+ E
Sbjct: 1937 SFTLE 1941
>gi|218192410|gb|EEC74837.1| hypothetical protein OsI_10683 [Oryza sativa Indica Group]
Length = 495
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 36/136 (26%), Gaps = 25/136 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLI-RFPQEKESTCNV 65
QKI ++ GD N +I+ W+ + + L E +
Sbjct: 316 LPQKILDHDRVILLGDLNYRISLPEAKTRLLVERQDWKTLLENDQLRSEVESEGGAFHGW 375
Query: 66 I------------------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+S R + + Q D S+
Sbjct: 376 NEGAIAFSPTYKYYPNSDTYYGCASHGRKGEKRRAPAWCDRILWRGAGLKQKRYDRCESR 435
Query: 108 LSTHCPLTIEYDFEKG 123
LS H P+ ++ E G
Sbjct: 436 LSDHRPVRALFEVEVG 451
>gi|321399241|emb|CBZ08543.1| apurinic/apyrimidinic endonuclease-redox protein [Leishmania
infantum JPCM5]
Length = 447
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 17/141 (12%), Positives = 31/141 (21%), Gaps = 38/141 (26%)
Query: 7 EWLKKWADQKIK-----------TGIPFVIAGDFNRKINSIGDT---------------- 39
+ L WA + + F+ AGD N
Sbjct: 303 QRLDTWATENAAVPSAAAKGGDSSPHGFIWAGDLNVAERDYDRYYAGTFKSMQECSGFAP 362
Query: 40 ------DDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
+ Q+ + + + +R F++ +
Sbjct: 363 EERISFRETMQRTNSVDVFRQLYPHAGPVYSFWSQRINGRPRNLGW--RLDYFVVSS--R 418
Query: 93 IVSYDQSDLDTRRSKLSTHCP 113
+ SY S HCP
Sbjct: 419 LASYVVDCFPMPTVMGSDHCP 439
>gi|302537936|ref|ZP_07290278.1| sphingomyelin phosphodiesterase [Streptomyces sp. C]
gi|302446831|gb|EFL18647.1| sphingomyelin phosphodiesterase [Streptomyces sp. C]
Length = 329
Score = 41.4 bits (95), Expect = 0.045, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 14/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ-- 57
M S+Q + + + D K I ++AGD N +
Sbjct: 199 MRSRQFKNIDAFLDAKNIPANEQVIVAGDMNVDSRTPEYASMLADADLAGADTRTGHPYS 258
Query: 58 -EKESTCNVIKRNKSSLDYFVIDRDNKNF------LIDNSFSIVSYDQSDLDTRRSK--- 107
+ R + + + +N S + +S
Sbjct: 259 FDTAQNSIANYRYPTDPREDLDYVLYRKANARPAGWENNVVKEQSTPWTVSSWGKSYTYS 318
Query: 108 -LSTHCPLT 115
LS H P+
Sbjct: 319 NLSDHYPVI 327
>gi|269864233|ref|XP_002651501.1| exodeoxyribonuclease III [Enterocytozoon bieneusi H348]
gi|220064406|gb|EED42554.1| exodeoxyribonuclease III [Enterocytozoon bieneusi H348]
Length = 226
Score = 41.4 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 22/96 (22%), Gaps = 5/96 (5%)
Query: 28 DFNRKINSIGDTDDFWQKM-DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFL 86
D M +E + + D
Sbjct: 107 DLYDHFMEKRQRQWLANLMKTFVDTFRVGNKELFQYTCWDRVLRHRESNLGTRIDYILLK 166
Query: 87 IDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + I S + S HCP+T+E D +
Sbjct: 167 TTSHYKIKSAEI----RPDIYGSDHCPVTLEIDIGE 198
>gi|197335619|ref|YP_002156266.1| nuclease [Vibrio fischeri MJ11]
gi|197317109|gb|ACH66556.1| nuclease [Vibrio fischeri MJ11]
Length = 884
Score = 41.4 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 13/82 (15%)
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK------- 107
++ +LD+ + ++ + + ++ +S+L K
Sbjct: 780 LRHGTDTFSYTYSGELGNLDHALANKSLAKRVAEIEDWHINAAESNLFEYSPKYTGDMVK 839
Query: 108 ------LSTHCPLTIEYDFEKG 123
S H P+ I D+EKG
Sbjct: 840 YNDMYSASDHDPIVITLDYEKG 861
>gi|163119479|ref|YP_079289.2| hypothetical protein BL01872 [Bacillus licheniformis ATCC 14580]
gi|145902986|gb|AAU23651.2| hypothetical protein BL01872 [Bacillus licheniformis ATCC 14580]
Length = 241
Score = 41.4 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 19/111 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q ++L ++ ++ +P ++ GDFN K S G + D Q +
Sbjct: 144 KQTDFL---IEKVQESDLPVIVTGDFNMKPYSRGWKKVAEKLADLWDE----SQYGQGFT 196
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ R + + SF + + + S H PL
Sbjct: 197 HPSHRPRR---------RLDYIFLSPSFHVSAAEIV---AVDPNASDHLPL 235
>gi|146305200|ref|YP_001185665.1| endonuclease/exonuclease/phosphatase [Pseudomonas mendocina ymp]
gi|145573401|gb|ABP82933.1| Endonuclease/exonuclease/phosphatase [Pseudomonas mendocina ymp]
Length = 290
Score = 41.4 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 32/111 (28%), Gaps = 22/111 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ +++ V+ GD N + + L + PQ + + + +
Sbjct: 185 AYIRERVGEFRHLVLMGDMNTHAVDLLENSPL------RDLGLIAPQAEATFPSWRPQR- 237
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ L+ + + D +S H P+ +E
Sbjct: 238 ----------CLDHILLSSELELGRVDVLSQP-----ISDHLPVAVEIRLP 273
>gi|222150529|ref|YP_002559682.1| hypothetical protein MCCL_0279 [Macrococcus caseolyticus JCSC5402]
gi|222119651|dbj|BAH16986.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 273
Score = 41.4 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 31/108 (28%), Gaps = 2/108 (1%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ +P ++ GDFN + G + + + I++N +
Sbjct: 168 INALSHYELPKLLMGDFNNPEGTEGYAYVLKSDANIQDTYTVAKKRT--GSHTIEKNIAG 225
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ F ++ + + +S H + E +
Sbjct: 226 WEDNDGKLRIDFIFSTPEFKVLHHGTVFDGRTEAIVSDHFGVEAEIEL 273
>gi|218662309|ref|ZP_03518239.1| putative phosphatase protein [Rhizobium etli IE4771]
Length = 102
Score = 41.4 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 23/103 (22%), Gaps = 11/103 (10%)
Query: 23 FVIAGDFNRKINSIGDTDDF-WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD----YFV 77
+VI GDFN + S + + R +S
Sbjct: 2 YVIMGDFNMEPESPEYSALAGAAGGYYGRVARIGTPVDAFATLEAYRPESYSWMDPEDHG 61
Query: 78 IDRDNKNFLIDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S S H PL +E
Sbjct: 62 KRMHLDYCFVSCGLVSRLKSARIDTQSVG----SDHFPLWVEI 100
>gi|189198097|ref|XP_001935386.1| endonuclease/exonuclease/phosphatase family protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187981334|gb|EDU47960.1| endonuclease/exonuclease/phosphatase family protein [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 607
Score = 41.4 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 32/116 (27%), Gaps = 6/116 (5%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + + + + AGDFN + D + + E
Sbjct: 495 EQSRLTANFIKE---STARIITAGDFNEFAFVEPLEEYATISGLKDLDAVVGIDKVERYT 551
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N LD+ + I + +++S H P + +
Sbjct: 552 YMFDMNAQQLDHMYVSPSLAKKSKAAYEHIH---VNTWPEFAAQVSDHDPSVAKLN 604
>gi|70733598|ref|YP_257238.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
fluorescens Pf-5]
gi|68347897|gb|AAY95503.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
fluorescens Pf-5]
Length = 292
Score = 41.4 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 22/111 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N + + + L + PQ + + + +
Sbjct: 184 AYIRELIGGYKHQVLMGDMNTHASDLLEHSPL------RDLSLLAPQLQATFPSWRPQR- 236
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ L+ S ++ + +S H P+ +E
Sbjct: 237 ----------CLDHILLSPSLTLERVEVLAQP-----ISDHLPVAVEIRLP 272
>gi|304311554|ref|YP_003811152.1| hypothetical protein HDN1F_19240 [gamma proteobacterium HdN1]
gi|301797287|emb|CBL45507.1| Hypothetical protein HDN1F_19240 [gamma proteobacterium HdN1]
Length = 306
Score = 41.4 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 26/121 (21%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q +L+ ++ GD N I P
Sbjct: 203 NRQLAYLRDLIG----IAEHVIVMGDLNCSGEQI--------LATPLRETHLIQANGSHH 250
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + S+D+ + + S I + D+ LS H P+ +E
Sbjct: 251 TYPSWKPQRSIDHIL---------VSPSLHIRRVEVLDVA-----LSDHRPIAMEIKLPA 296
Query: 123 G 123
Sbjct: 297 S 297
>gi|110289481|gb|ABB47932.2| retrotransposon protein, putative, LINE subclass [Oryza sativa
Japonica Group]
Length = 808
Score = 41.4 bits (95), Expect = 0.046, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 3/118 (2%)
Query: 3 SQQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-FWQKMDPDGLLIRFPQEK 59
Q + L++ D K +++ GDFN + + ++ E
Sbjct: 572 QQSAKQTFLRELRDTKPSDNSKWLVLGDFNIIYKASDKNNANINRRQMRIFKETLNACEL 631
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ +R S + + N+ ++++ L + LS HCPL +
Sbjct: 632 KEVALQNRRYTWSNEQDNPTLVKLDRFFCNASWNTAFERHLLHALSTSLSDHCPLMLT 689
>gi|319953162|ref|YP_004164429.1| endonuclease/exonuclease/phosphatase [Cellulophaga algicola DSM
14237]
gi|319421822|gb|ADV48931.1| Endonuclease/exonuclease/phosphatase [Cellulophaga algicola DSM
14237]
Length = 325
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 35/138 (25%), Gaps = 19/138 (13%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + ++ + +++ GDFN + +K + + ++ S
Sbjct: 188 KAAATIINFMKVLEEKYSEPNYIVMGDFNDGPQTASVKKLVGEKNLFNPMEKLLTPKRGS 247
Query: 62 TCN-----------VIKRNKSSLDY------FVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + I D+ F +
Sbjct: 248 ANYKFKWSLFDQILISHSFLNFEKKTHSFNSSNIFDDHFLTEFKGKFKGSPFRTYVGRRY 307
Query: 105 RSKLSTHCPLTIEYDFEK 122
S H P+ I F K
Sbjct: 308 MGGYSDHFPVYIHLKFNK 325
>gi|299144762|ref|ZP_07037830.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_23]
gi|298515253|gb|EFI39134.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_23]
Length = 336
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 27/115 (23%), Gaps = 19/115 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + Q + + K + ++ GDFN S + +
Sbjct: 235 IRATQADSVAKTIAE--SKYPTTIVCGDFNDGSISYTHRILTQKL-------DDAFTQSG 285
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N LI + + K S H P+
Sbjct: 286 KGLGISYNQNKFYF------RIDNILISPNLKAYNCTVDRSI----KASDHYPIW 330
>gi|295085558|emb|CBK67081.1| Exonuclease III [Bacteroides xylanisolvens XB1A]
Length = 361
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 27/115 (23%), Gaps = 19/115 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + Q + + K + ++ GDFN S + +
Sbjct: 260 IRATQADSVAKTIAE--SKYPTTIVCGDFNDGSISYTHRILTQKL-------DDAFTQSG 310
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N LI + + K S H P+
Sbjct: 311 KGLGISYNQNKFYF------RIDNILISPNLKAYNCTVDRSI----KASDHYPIW 355
>gi|297722873|ref|NP_001173800.1| Os04g0220500 [Oryza sativa Japonica Group]
gi|255675234|dbj|BAH92528.1| Os04g0220500 [Oryza sativa Japonica Group]
Length = 1510
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 15/121 (12%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD--------TDDFWQKMDPDGLLIRFPQE 58
++L++ + IPF++ GDFN D + L +
Sbjct: 1164 DFLREILGKSNSMQIPFMMGGDFNMIRFPDEKSNGNIHKRWADKFNSFIALAELRELHRS 1223
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + ++ +S Y + + + S H PL +E
Sbjct: 1224 GGKYTWTN-------KQADPVMEVLDRVLVSSSWEEMYPLTMVKSLLRVGSDHNPLLVEL 1276
Query: 119 D 119
+
Sbjct: 1277 E 1277
>gi|229131623|ref|ZP_04260505.1| Sphingomyelinase C [Bacillus cereus BDRD-ST196]
gi|228651849|gb|EEL07804.1| Sphingomyelinase C [Bacillus cereus BDRD-ST196]
Length = 333
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 33/138 (23%), Gaps = 21/138 (15%)
Query: 4 QQGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIR 54
+Q + ++++ + I +I GD N NS + ++ +
Sbjct: 197 KQLQEIQEFIKNKNIPNNEYVLIGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHT 256
Query: 55 FPQEKESTCNVIKRNKSS-----------LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + S D+ L S T
Sbjct: 257 ATWDATTNSIAKYNFPDSPAEYLDYIITSKDHANPSYIENKVLQSKSPQWTVTSWLKEYT 316
Query: 104 RRSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 317 YNDY-SDHYPVEATISMK 333
>gi|160884105|ref|ZP_02065108.1| hypothetical protein BACOVA_02081 [Bacteroides ovatus ATCC 8483]
gi|156110447|gb|EDO12192.1| hypothetical protein BACOVA_02081 [Bacteroides ovatus ATCC 8483]
Length = 361
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 27/115 (23%), Gaps = 19/115 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + Q + + K + ++ GDFN S + +
Sbjct: 260 IRATQADSVAKTIAE--SKYPTTIVCGDFNDGSISYTHRILTQKL-------DDAFTQSG 310
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N LI + + K S H P+
Sbjct: 311 KGLGISYNQNKFYF------RIDNILISPNLKAYNCTVDRSI----KASDHYPIW 355
>gi|125624555|ref|YP_001033038.1| 3'-exo-deoxyribonuclease [Lactococcus lactis subsp. cremoris
MG1363]
gi|124493363|emb|CAL98337.1| 3'-exo-deoxyribonuclease [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071349|gb|ADJ60749.1| exodeoxyribonuclease A [Lactococcus lactis subsp. cremoris NZ9000]
Length = 285
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 37/130 (28%), Gaps = 29/130 (22%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRFPQ---- 57
+ P GDFN I + + ++ G F Q
Sbjct: 159 LDAQKPVFACGDFNAAYTEIDLANPRGNHNSAGFTDQEREKFGQLLEAGFTDTFRQLHGQ 218
Query: 58 -------EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ +R K+S +L+ N + + S+ +L
Sbjct: 219 VEKFYEEGRSIYTWFAQRAKTSKLN-NSGWRIDYWLVSNRLAQ-AVKVSEPLDSGERL-D 275
Query: 111 HCPLTIEYDF 120
H P+ +E++
Sbjct: 276 HVPILLEFEL 285
>gi|71909379|ref|YP_286966.1| endonuclease/exonuclease/phosphatase [Dechloromonas aromatica RCB]
gi|71849000|gb|AAZ48496.1| Endonuclease/exonuclease/phosphatase [Dechloromonas aromatica RCB]
Length = 252
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 14/116 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + L + D+ P +IAGDFN N G+ +++ +
Sbjct: 146 RKQMDALATYLDKTADPTAPLIIAGDFNDWGNRAGEH--MARRLGLREVF---------- 193
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S + + + L S +S H L+
Sbjct: 194 SGPSGNPARSFPAAMPMFRLDRIYVRGFDVKRTEVHHGLPW--SNISDHAALSAYL 247
>gi|322709123|gb|EFZ00699.1| Endonuclease/Exonuclease/phosphatase family protein [Metarhizium
anisopliae ARSEF 23]
Length = 320
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 12/111 (10%), Positives = 31/111 (27%), Gaps = 1/111 (0%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+W+ K +I GDFN + + + P+ + ++ +
Sbjct: 207 NEWSHGKGVPPSVVLIGGDFNSETDDEAYRMMTAPGSGMSDISDLVPERRHYGNHLTYTS 266
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS-KLSTHCPLTIEYD 119
+ D + + ++ + S H P+ +
Sbjct: 267 FGEPNEHPQRIDFLFIQEPRTAHVETFGVLANSFDDQIRFSDHRPIVSDLQ 317
>gi|307111052|gb|EFN59287.1| hypothetical protein CHLNCDRAFT_137627 [Chlorella variabilis]
Length = 390
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 26/145 (17%), Gaps = 25/145 (17%)
Query: 2 LSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI------- 53
L + L+ K +I GDFN +++ +
Sbjct: 200 LKHALQRLEGHIGSKDAAEAADVIICGDFNSLDQDSPCWLLRRGRLERNHTDACCPQVPT 259
Query: 54 ----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD--------- 100
+ + V I S +
Sbjct: 260 TKETIAHPFALHEAYESSGYRQPFTHKVAQDHAVLDFIWCSRHMPVAAVMRPLQQELREV 319
Query: 101 ----LDTRRSKLSTHCPLTIEYDFE 121
R S H P+
Sbjct: 320 VGKCYLPNRWHPSDHLPVGAVLKLS 344
>gi|295112781|emb|CBL31418.1| Metal-dependent hydrolase [Enterococcus sp. 7L76]
gi|315145547|gb|EFT89563.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX2141]
gi|315162610|gb|EFU06627.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0645]
Length = 254
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N +
Sbjct: 157 AQYPTLLMGDFNAESGE-EVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 211 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 248
>gi|256395196|ref|YP_003116760.1| endonuclease/exonuclease/phosphatase [Catenulispora acidiphila DSM
44928]
gi|256361422|gb|ACU74919.1| Endonuclease/exonuclease/phosphatase [Catenulispora acidiphila DSM
44928]
Length = 236
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 31/121 (25%), Gaps = 18/121 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPF--VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + D + V+AGDFN S+ +++ ++ ++ +
Sbjct: 127 HQAGEVLGHLDGFAERNQTTSRVLAGDFNSYPGSVE-WGILTERLADAWMVS-PMGDEFT 184
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL---DTRRSKLSTHCPLTIEY 118
+ + + +V + S H P+
Sbjct: 185 STGPNPY-----------QRLDAVFVSRDVDVVRAGVPTDLIAKADEALASDHRPVLAVL 233
Query: 119 D 119
Sbjct: 234 R 234
>gi|229094192|ref|ZP_04225271.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-42]
gi|228689184|gb|EEL43006.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-42]
Length = 291
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW 43
+ QQ E+LK + ++ + G ++ GD+N+ ++ + +D +
Sbjct: 226 IRKQQVEYLKAYMNKHYEKGDYVIMGGDWNQLVSDVQLSDPKF 268
>gi|139474328|ref|YP_001129044.1| exodeoxyribonuclease [Streptococcus pyogenes str. Manfredo]
gi|134272575|emb|CAM30841.1| exodeoxyribonuclease [Streptococcus pyogenes str. Manfredo]
Length = 275
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 39/143 (27%), Gaps = 33/143 (23%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQK 45
+Q W K+AD ++ P + GD+N I + +
Sbjct: 141 DRQI-WDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPSSNRRSPGFTDEERQGFTN 199
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N +
Sbjct: 200 LLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKIN-NTGWRIDYWLASNRL------VDKV 252
Query: 102 DTRRSKLS----THCPLTIEYDF 120
S H P+ ++ DF
Sbjct: 253 KRSEMISSGERQDHTPILLDIDF 275
>gi|33604227|gb|AAH56304.1| Deoxyribonuclease I-like 3 [Danio rerio]
Length = 315
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 2/102 (1%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+ GDFN + + ++ D Q+ T + + V
Sbjct: 180 ETENVMFLGDFNAACGYVAKKNRKNIRLYTDPSFTWLIQDNVDTTVKESTDCAYDRIVVH 239
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
+ S ++ + L T L S H P+ +
Sbjct: 240 GEPFLRSIEPFSAQPFNFPKEFLLTEAQALEVSDHYPIEVVL 281
>gi|305665675|ref|YP_003861962.1| hypothetical protein FB2170_05240 [Maribacter sp. HTCC2170]
gi|88710433|gb|EAR02665.1| hypothetical protein FB2170_05240 [Maribacter sp. HTCC2170]
Length = 324
Score = 41.4 bits (95), Expect = 0.047, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 31/124 (25%), Gaps = 17/124 (13%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN---------- 64
++ ++I GDFN +S + + E+ S
Sbjct: 200 EEQFENPNYIIMGDFNDNPDSKSIQLLLEDSNLYNPMEKLGSPERGSANYRRSWSLFDQI 259
Query: 65 -VIKRNKSSLD------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
V + + I DN F + S H P+ I+
Sbjct: 260 MVSHNFFNYEKGTHSFAHANIFDDNLLTEWKGKFKGTPFRTYAGRKYIGGYSDHFPVYIQ 319
Query: 118 YDFE 121
+
Sbjct: 320 LKYN 323
>gi|329956608|ref|ZP_08297181.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
clarus YIT 12056]
gi|328523980|gb|EGF51056.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
clarus YIT 12056]
Length = 374
Score = 41.4 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 26/111 (23%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + ++ GDFN S Q +D +
Sbjct: 276 QADTIAREIAS--SRYPSVIVCGDFNDTPISYA-HRVIAQNLDD------AFTQSGRGLG 326
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N LI + + K S H P+
Sbjct: 327 ISYNQNKFYF------RIDNILISKNLQSYNCTVDRSI----KESDHYPIW 367
>gi|323455247|gb|EGB11116.1| hypothetical protein AURANDRAFT_62056 [Aureococcus anophagefferens]
Length = 446
Score = 41.4 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 32/132 (24%), Gaps = 26/132 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNR--------------KINSIGDTDDFWQKMDP 48
+Q L++ + +++AGDFN D +
Sbjct: 236 ERQVAALRETILPRQTRN--WLLAGDFNSLTPYEAAATLSKDEAALYPEDETPVA-PLYA 292
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + E + + + + + L
Sbjct: 293 STVPLWASPEDRIDTYKPWTSPAPDR------TIDHAFASPGAAFSDAKV---ERTDGYL 343
Query: 109 STHCPLTIEYDF 120
S H P+++ +
Sbjct: 344 SDHQPVSLTVTW 355
>gi|227515521|ref|ZP_03945570.1| endonuclease-exonuclease-phosphatase family protein [Lactobacillus
fermentum ATCC 14931]
gi|227086134|gb|EEI21446.1| endonuclease-exonuclease-phosphatase family protein [Lactobacillus
fermentum ATCC 14931]
Length = 378
Score = 41.4 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 40/133 (30%), Gaps = 16/133 (12%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSI-----------GDT-DDFWQKMDP 48
M Q + L ++ ++ G++N + D Q M
Sbjct: 250 MRKAQMKLLNAVIERAYLASNYVIVGGNYNHALGKDMLTHFASQEKVPDWVSVLDQSMVA 309
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
G + Q +E+ V + + FL+ N+ + + + +
Sbjct: 310 KGFTMVKAQNRETVPTVRSTDLAYRSGVNYLTVCDGFLVSNNVTATATNINTDFDYA--- 366
Query: 109 STHCPLTIEYDFE 121
H P+ + + +
Sbjct: 367 -DHNPVKLTFILK 378
>gi|294657145|ref|XP_459462.2| DEHA2E03124p [Debaryomyces hansenii CBS767]
gi|199432478|emb|CAG87678.2| DEHA2E03124p [Debaryomyces hansenii]
Length = 362
Score = 41.4 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 31/140 (22%), Gaps = 26/140 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL-IRFPQEKES 61
+ + + G P + GDFN K L +
Sbjct: 220 RESARLIVDRMENY--NGYPSFLCGDFNTKPEDEPYQILKSHGFKDSRTLIDQLHSYGHK 277
Query: 62 TCNVIKRN----KSSLDYFVIDRDNKNFLIDNSF-------------------SIVSYDQ 98
N + +DY KN S I Y
Sbjct: 278 ATFTGFDNLHEDTAIIDYVWGPYFAKNGNQSPSILESEDINYYDLDLHEEYKVMIKQYAV 337
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
+S H P++ +Y
Sbjct: 338 LHSRFHGFYMSDHRPVSADY 357
>gi|197105800|ref|YP_002131177.1| hypothetical protein PHZ_c2338 [Phenylobacterium zucineum HLK1]
gi|196479220|gb|ACG78748.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 243
Score = 41.4 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 29/117 (24%), Gaps = 16/117 (13%)
Query: 5 QGEWLKK--WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L W D P ++ GDFN S+ + L R
Sbjct: 139 QAAHLAGTTWLD-HPDCRWPAILLGDFNATATSVVYRTLTARLKAARRLTRRRTATSTFP 197
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + R S H PL +++D
Sbjct: 198 S------------PLPVLRIDHVFVSPGIEVHDVFAPFDPLTRV-ASDHLPLVMDFD 241
>gi|6681456|dbj|BAA88714.1| Deoxyribonuclease I [Gallus gallus]
Length = 283
Score = 41.4 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 9/102 (8%), Positives = 28/102 (27%), Gaps = 3/102 (2%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
GDFN + + ++ + + V + +
Sbjct: 180 ETNNIFFMGDFNADCSYVTAEQWPSIRLRSLSSCEWLIPDS-ADTTVTSTDCAYDRIVAC 238
Query: 79 DRDNKNFLIDNSFSIVSYDQ--SDLDTRRSKLSTHCPLTIEY 118
+ + S ++ ++ + + +S H P+ +
Sbjct: 239 GSALRQAVEYGSATVDNFQETLHIQNKDALAISDHFPVEVTL 280
>gi|300741984|ref|ZP_07072005.1| RgfB protein [Rothia dentocariosa M567]
gi|300381169|gb|EFJ77731.1| RgfB protein [Rothia dentocariosa M567]
Length = 297
Score = 41.4 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 41/119 (34%), Gaps = 3/119 (2%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + + L + ++ P ++ GDFN G+ D + + R ++
Sbjct: 160 LFAHEFARLSQALTER-GQDAPVLMGGDFNTAAQVRGEGYDL--VLSSGLVDTREIADRT 216
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ R + + + D + ++S+ D +S H + +E +
Sbjct: 217 DGEFTVHRGIAGWEGQEEAKRIDFVFADRAVKVLSHAVVFRDNSPKAISDHSGVLVELN 275
>gi|239813032|ref|YP_002941942.1| endonuclease/exonuclease/phosphatase [Variovorax paradoxus S110]
gi|239799609|gb|ACS16676.1| Endonuclease/exonuclease/phosphatase [Variovorax paradoxus S110]
Length = 242
Score = 41.4 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 28/118 (23%), Gaps = 14/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E L ++ P ++AGDFN + L F S
Sbjct: 139 QQQLELLLHIVRDEVPADAPLIVAGDFNDWRG-----RAHQVLEEGAALREVFVHANGSA 193
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N+ S LS H PL D
Sbjct: 194 AKTFP-------ARFPLLPLDRIYVRNAGVHAPVVLPRKPW--SHLSDHAPLVANIDL 242
>gi|121602932|ref|YP_980261.1| endonuclease/exonuclease/phosphatase [Polaromonas naphthalenivorans
CJ2]
gi|120591901|gb|ABM35340.1| Endonuclease/exonuclease/phosphatase [Polaromonas naphthalenivorans
CJ2]
Length = 277
Score = 41.4 bits (95), Expect = 0.048, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 14/117 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ + + ++I P V+AGDFN + + + ++ + T
Sbjct: 175 QQMKLVCDLVRKEIPVRAPVVVAGDFNDWR--RRAHAQMAKGANLHEVFVQANGQAARTF 232
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + N+ S LS H PL E
Sbjct: 233 ----------PARLPLLQLDRIYVRNAIGHSPIVLPSHPW--SHLSDHAPLAAEIRL 277
>gi|92115234|ref|YP_575162.1| endonuclease/exonuclease/phosphatase [Chromohalobacter salexigens
DSM 3043]
gi|91798324|gb|ABE60463.1| Endonuclease/exonuclease/phosphatase [Chromohalobacter salexigens
DSM 3043]
Length = 271
Score = 41.4 bits (95), Expect = 0.049, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 21/113 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I+ V+ GD N + I F + + S R
Sbjct: 168 DYLSEIIQPLRHVVVMGDLNCTPDQINAHQRFCHAL-----PLHPVAMPLSYPAWQPRRA 222
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ LI ++ ++ D S H P+ ++
Sbjct: 223 -----------LDHILISSALHAERFEVLDRLF-----SDHLPVAVDIQLPAA 259
>gi|119386766|ref|YP_917821.1| endonuclease/exonuclease/phosphatase [Paracoccus denitrificans
PD1222]
gi|119377361|gb|ABL72125.1| Endonuclease/exonuclease/phosphatase [Paracoccus denitrificans
PD1222]
Length = 260
Score = 41.4 bits (95), Expect = 0.049, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 31/116 (26%), Gaps = 21/116 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
S++ + + A + + GDFN +S G ++
Sbjct: 135 SRRAQLSRIIAQARRIGHDRMALTGDFNEWHDSRGLEALEALRVV-----------TPGP 183
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
F + S ++ D + R+ S H P+ +
Sbjct: 184 SWP---------APFPRLRYDRFAVSRSIEVLDCGVLDNEMARA-ASDHLPVWADL 229
>gi|322489986|emb|CBZ25246.1| AP-endonuclease [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 447
Score = 41.4 bits (95), Expect = 0.049, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 25/114 (21%), Gaps = 27/114 (23%)
Query: 23 FVIAGDFNRKINSIGDT----------------------DDFWQKMDPDGLLIRFPQ-EK 59
F+ AGD N + Q+ + + +
Sbjct: 330 FIWAGDLNVAERDYDRYYAGTFKSMQECSGFAPEERMSFRETMQRTNSVDVFRQLYPQAG 389
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+R F++ + + SY S HCP
Sbjct: 390 PVYSFWSQRINGRPRNLGW--RLDYFVVSS--RLASYVVDCFPMPTVMGSDHCP 439
>gi|312951002|ref|ZP_07769910.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0102]
gi|310630957|gb|EFQ14240.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0102]
gi|315154039|gb|EFT98055.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0031]
Length = 254
Score = 41.4 bits (95), Expect = 0.049, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N +
Sbjct: 157 AEYPTLLMGDFNAESGE-EVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 211 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 248
>gi|292490695|ref|YP_003526134.1| endonuclease/exonuclease/phosphatase [Nitrosococcus halophilus Nc4]
gi|291579290|gb|ADE13747.1| Endonuclease/exonuclease/phosphatase [Nitrosococcus halophilus Nc4]
Length = 286
Score = 41.4 bits (95), Expect = 0.049, Method: Composition-based stats.
Identities = 13/106 (12%), Positives = 28/106 (26%), Gaps = 21/106 (19%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ V+ GD N + +S + + + R K
Sbjct: 173 ISHLVHEHPYVVVMGDLNCQPHSPELSALLQKTGLKA-------PATKIATYPSWRPKRH 225
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+D+ ++ + + + +S H PL E
Sbjct: 226 IDHILVSPSL--------------EVTQVCALEHTVSDHLPLATEI 257
>gi|213966791|ref|ZP_03394942.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato T1]
gi|213928641|gb|EEB62185.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato T1]
Length = 365
Score = 41.4 bits (95), Expect = 0.049, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 33/131 (25%), Gaps = 15/131 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKI-------------NSIGDTDDFWQKMDPDG 50
+Q + D+ G P++I GDFN D++
Sbjct: 234 EQIAATENLLDKLEGGGTPWLIGGDFNLLPLGQYQRLPEQQRHGYAADSELHALWEKYPM 293
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + + DR S VS DT +S
Sbjct: 294 IPNNTESSGTDRSQWLTHFPNDSRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--ISD 351
Query: 111 HCPLTIEYDFE 121
H P+ +
Sbjct: 352 HLPVIGRFLLP 362
>gi|328542833|ref|YP_004302942.1| endonuclease/exonuclease/phosphatase family [polymorphum gilvum
SL003B-26A1]
gi|326412579|gb|ADZ69642.1| Endonuclease/exonuclease/phosphatase family [Polymorphum gilvum
SL003B-26A1]
Length = 362
Score = 41.0 bits (94), Expect = 0.050, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 31/119 (26%), Gaps = 15/119 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
E L+ T +P ++ GD+N ++ + G L +
Sbjct: 259 RHLSEALR---GPAAGTDLPTILIGDWNLSP-----WSAHFRALLKAGGLKAAFPDTI-- 308
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ +++ + + + S H PL ++
Sbjct: 309 PQTTRYFADYRLRWLLGAPVDHVAVSPGLGVDRVGIGPDI-----GSDHLPLLVDIALP 362
>gi|312899298|ref|ZP_07758633.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0470]
gi|311293546|gb|EFQ72102.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0470]
Length = 254
Score = 41.0 bits (94), Expect = 0.050, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N +
Sbjct: 157 AQYPTLLMGDFNAESEE-EVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 211 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 248
>gi|260174301|ref|ZP_05760713.1| hypothetical protein BacD2_20756 [Bacteroides sp. D2]
Length = 304
Score = 41.0 bits (94), Expect = 0.050, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 36/117 (30%), Gaps = 10/117 (8%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ E + + G+P ++ DFN++I+S G+ + S
Sbjct: 196 KSMEVIVNKMSELNPEGLPMLLTADFNKQIDSDIFN----------GVKTFMTNVRLSAP 245
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + ++ + + +S H P+ + ++
Sbjct: 246 VTDSKYSYTGFGTANPYIVDHIFCTGFKALKFETIDKVYQNITYISDHYPIVGKLEY 302
>gi|163734486|ref|ZP_02141926.1| hypothetical protein RLO149_09579 [Roseobacter litoralis Och 149]
gi|161392494|gb|EDQ16823.1| hypothetical protein RLO149_09579 [Roseobacter litoralis Och 149]
Length = 280
Score = 41.0 bits (94), Expect = 0.050, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 4/118 (3%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q E + P ++AGDFN + E+ +
Sbjct: 167 ARQAELAET--QSHFDCEGPCLVAGDFNSYA--VPWLAPLLAIPLHYRPKDWLIFERRAL 222
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +R + + +D F+ ++ + RR S H PL++E +
Sbjct: 223 NSWFQRQGFAPAVHGVTFPKFRLQMDQLFTRDITVETAVIERRLWGSDHRPLSLEINL 280
>gi|114660657|ref|XP_001168176.1| PREDICTED: deoxyribonuclease I isoform 3 [Pan troglodytes]
gi|332845211|ref|XP_001168207.2| PREDICTED: deoxyribonuclease-1 isoform 4 [Pan troglodytes]
gi|332845213|ref|XP_510773.3| PREDICTED: deoxyribonuclease-1 isoform 5 [Pan troglodytes]
Length = 282
Score = 41.0 bits (94), Expect = 0.050, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 39/116 (33%), Gaps = 5/116 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D + K G ++ GDFN + + + ++ + +
Sbjct: 165 EIDALYDVYLDVQEKWGLEDVMLMGDFNAGCSYVRPSQWSSIRLRTSPAFQWLIPDS-AD 223
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTI 116
+ + V + ++ +S ++ + + +S H P+ +
Sbjct: 224 TTATPTHCAYDRIVVAGMLLQGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEV 279
>gi|260767805|ref|ZP_05876740.1| hypothetical protein VFA_000855 [Vibrio furnissii CIP 102972]
gi|260617314|gb|EEX42498.1| hypothetical protein VFA_000855 [Vibrio furnissii CIP 102972]
Length = 287
Score = 41.0 bits (94), Expect = 0.050, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 20/115 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E L + + P ++AGDFN + ++ D L QE
Sbjct: 187 EQLTALIQELRQHKGPILVAGDFNS-------WSEKRTQVLRDALSALGMQEATF----S 235
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
N++ + + S S H PL +E+
Sbjct: 236 PDNRARFINGLPLDHVFYKQLTL---------KKAKAPESDASDHNPLLLEFSLS 281
>gi|225690560|ref|NP_998318.2| deoxyribonuclease I-like 3 [Danio rerio]
Length = 317
Score = 41.0 bits (94), Expect = 0.050, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 2/102 (1%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+ GDFN + + ++ D Q+ T + + V
Sbjct: 182 ETENVMFLGDFNAACGYVAKKNRKNIRLYTDPSFTWLIQDNVDTTVKESTDCAYDRIVVH 241
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
+ S ++ + L T L S H P+ +
Sbjct: 242 GEPFLRSIKPFSAQPFNFPKEFLLTEAQALEVSDHYPIEVVL 283
>gi|218202105|gb|EEC84532.1| hypothetical protein OsI_31265 [Oryza sativa Indica Group]
Length = 365
Score = 41.0 bits (94), Expect = 0.050, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 31/129 (24%), Gaps = 23/129 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIG----------------DTDDFWQKMDPDGLLI--- 53
+KI V+ GD N +I+ + D +
Sbjct: 213 LPKKILDHDQVVLLGDLNYRISLEEAETRLLVEDKNWSILLENDQLLIEFSTGRHFDGWQ 272
Query: 54 ----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F + N + + + + Q DT +LS
Sbjct: 273 EGLITFSPTYKYHPNSDQYYWCFDGALGKKKRAPAWCDRILWRGKGLKQIQYDTCNYRLS 332
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 333 DHRPVRAVF 341
>gi|54296503|ref|YP_122872.1| hypothetical protein lpp0534 [Legionella pneumophila str. Paris]
gi|53750288|emb|CAH11682.1| hypothetical protein lpp0534 [Legionella pneumophila str. Paris]
Length = 257
Score = 41.0 bits (94), Expect = 0.050, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 14/117 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + L + + P ++AGDFN + + + + + + +
Sbjct: 154 EQCKALIQRIKDVVPKNEPMIMAGDFNDWRH--VISKILAENLGIEEAFVALEGQHA--- 208
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R+ ++ + + V+ Q LS H PL ++
Sbjct: 209 ----RSFPAIKPALCVDRVYFRGMK--VQEVACLQGKPWR---MLSDHLPLYARFEL 256
>gi|29375810|ref|NP_814964.1| hypothetical protein EF1237 [Enterococcus faecalis V583]
gi|227518498|ref|ZP_03948547.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0104]
gi|227553023|ref|ZP_03983072.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis HH22]
gi|256958727|ref|ZP_05562898.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis DS5]
gi|257078756|ref|ZP_05573117.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis JH1]
gi|257419061|ref|ZP_05596055.1| predicted protein [Enterococcus faecalis T11]
gi|294781151|ref|ZP_06746501.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis PC1.1]
gi|307268651|ref|ZP_07550020.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX4248]
gi|29343271|gb|AAO81034.1| conserved hypothetical protein [Enterococcus faecalis V583]
gi|227074176|gb|EEI12139.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0104]
gi|227177855|gb|EEI58827.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis HH22]
gi|256949223|gb|EEU65855.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis DS5]
gi|256986786|gb|EEU74088.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis JH1]
gi|257160889|gb|EEU90849.1| predicted protein [Enterococcus faecalis T11]
gi|294451829|gb|EFG20281.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis PC1.1]
gi|306514963|gb|EFM83509.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX4248]
gi|315031565|gb|EFT43497.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0017]
gi|315035019|gb|EFT46951.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0027]
gi|315166553|gb|EFU10570.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1341]
gi|315169918|gb|EFU13935.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1342]
gi|315575705|gb|EFU87896.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0309B]
gi|315579851|gb|EFU92042.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0309A]
gi|323480469|gb|ADX79908.1| endonuclease/Exonuclease/phosphatase family protein [Enterococcus
faecalis 62]
Length = 254
Score = 41.0 bits (94), Expect = 0.050, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N +
Sbjct: 157 AQYPTLLMGDFNAESGE-EVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 211 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 248
>gi|323359561|ref|YP_004225957.1| hypothetical protein MTES_3113 [Microbacterium testaceum StLB037]
gi|323275932|dbj|BAJ76077.1| hypothetical protein MTES_3113 [Microbacterium testaceum StLB037]
Length = 340
Score = 41.0 bits (94), Expect = 0.051, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 9/109 (8%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
KW + + ++AGDFN I+ + +
Sbjct: 237 KWLADQCASD-NVILAGDFNATIDHMTGLGVDGGTLGRCRDTTSASGNGGVGTWPTDIPA 295
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ + S + + D S S H P+ ++ +
Sbjct: 296 ILGAPIDHVMATPDWTVSGSIVMRTLDGSG--------SDHRPVVVQLE 336
>gi|315179365|gb|ADT86279.1| hypothetical protein vfu_A01089 [Vibrio furnissii NCTC 11218]
Length = 287
Score = 41.0 bits (94), Expect = 0.051, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 20/115 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E L + + P ++AGDFN + ++ D L QE
Sbjct: 187 EQLTALIQELRQHKGPILVAGDFNS-------WSEKRTQVLRDALSALGMQEATF----S 235
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
N++ + + S S H PL +E+
Sbjct: 236 PDNRARFINGLPLDHVFYKQLTL---------KKAKAPESDASDHNPLLLEFSLS 281
>gi|229592863|ref|YP_002874982.1| putative endonuclease [Pseudomonas fluorescens SBW25]
gi|229364729|emb|CAY52702.1| putative endonuclease [Pseudomonas fluorescens SBW25]
Length = 259
Score = 41.0 bits (94), Expect = 0.051, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 18/118 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ L++ + I G P V+AGDFN + GL F +
Sbjct: 160 QQQLRLLEQRISE-IPAGAPLVVAGDFNDWRQKAD--------LSQSGLREVFIETHGKL 210
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + N S LS H PL++E +
Sbjct: 211 PRTFP-------ARLPLLPLDRIYVRNVKVHNPRV--LTSRPWSHLSDHVPLSVEIEL 259
>gi|229550274|ref|ZP_04438999.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis ATCC 29200]
gi|255973048|ref|ZP_05423634.1| predicted protein [Enterococcus faecalis T1]
gi|300859716|ref|ZP_07105804.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TUSoD Ef11]
gi|307274440|ref|ZP_07555623.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX2134]
gi|229304537|gb|EEN70533.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis ATCC 29200]
gi|255964066|gb|EET96542.1| predicted protein [Enterococcus faecalis T1]
gi|300850534|gb|EFK78283.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TUSoD Ef11]
gi|306508834|gb|EFM77921.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX2134]
gi|315157326|gb|EFU01343.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0043]
gi|315158389|gb|EFU02406.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0312]
gi|327534861|gb|AEA93695.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis OG1RF]
Length = 254
Score = 41.0 bits (94), Expect = 0.051, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N +
Sbjct: 157 AQYPTLLMGDFNAESGE-EVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 211 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 248
>gi|156086334|ref|XP_001610576.1| endonuclease/exonuclease/phosphatase family protein [Babesia bovis
T2Bo]
gi|154797829|gb|EDO07008.1| endonuclease/exonuclease/phosphatase family protein [Babesia bovis]
Length = 319
Score = 41.0 bits (94), Expect = 0.051, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 42/153 (27%), Gaps = 35/153 (22%)
Query: 1 MLSQQGEWLKKWA------DQKIKTGI------PFVIAGDFNRKINSIGDT--DDFWQKM 46
+ ++Q L +W D++ P V+AGD N ++S + D
Sbjct: 165 IRNKQLIELAEWIGINPLEDERAIAERDSLPYVPMVLAGDLNCSLDSETERFSDVVAALN 224
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFV---IDRDNKNFLIDNSFSIVSYDQSD--- 100
D + Q + + + + + D +++ D
Sbjct: 225 DKLEDTFGYNQPEPTYSTLTNDFCAFQNNPNVFNHVYDYILKNHESTLLEAQRVIKDKLE 284
Query: 101 ---------------LDTRRSKLSTHCPLTIEY 118
+D +S H P+
Sbjct: 285 TAFVLPVCDEDDDDCVDPEMYNVSDHYPIIATI 317
>gi|315173180|gb|EFU17197.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1346]
Length = 254
Score = 41.0 bits (94), Expect = 0.051, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N +
Sbjct: 157 AQYPTLLMGDFNAESEE-EVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 211 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 248
>gi|302131242|ref|ZP_07257232.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato NCPPB 1108]
Length = 382
Score = 41.0 bits (94), Expect = 0.051, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 34/131 (25%), Gaps = 15/131 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKI-------------NSIGDTDDFWQKMDPDG 50
+Q + D+ G P++I GDFN D++
Sbjct: 251 EQIAATENLLDKLEGGGTPWLIGGDFNLLPLGQYQRLPEQQRHGYAADSELHALWEKYPM 310
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + ++ DR S VS DT +S
Sbjct: 311 IPNNTESSGTDRSQWLTHFPNASRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--ISD 368
Query: 111 HCPLTIEYDFE 121
H P+ +
Sbjct: 369 HLPVIGRFLLP 379
>gi|302820700|ref|XP_002992016.1| hypothetical protein SELMODRAFT_430260 [Selaginella moellendorffii]
gi|300140138|gb|EFJ06865.1| hypothetical protein SELMODRAFT_430260 [Selaginella moellendorffii]
Length = 379
Score = 41.0 bits (94), Expect = 0.051, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 41/146 (28%), Gaps = 30/146 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKI------------NSIGDTDDFWQKMDP-- 48
+Q L+ + +K G +I GD N ++ F +
Sbjct: 210 ERQDFMLQCRLESILKQGRRIIIVGDLNISPYPINSCDPGPEFDTNPSRQWFRSLLVSEV 269
Query: 49 ---DGLLIRFPQEKESTCNV------IKRNKSSLDYFVID-RDNKNFLIDNSFSIVSYDQ 98
F ++ TC S +D+ +I +++ D
Sbjct: 270 VRFQTRFACFILKEAYTCWSQASGAEEFNYGSRIDHVLIAGPCAGHYMCDILLEFKRAKL 329
Query: 99 SDLDTR------RSKLSTHCPLTIEY 118
L + S H P+ +++
Sbjct: 330 DTLPRWSGGRSLKLDGSDHAPVILQF 355
>gi|256962167|ref|ZP_05566338.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis Merz96]
gi|293383194|ref|ZP_06629110.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis R712]
gi|293387652|ref|ZP_06632198.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis S613]
gi|312907219|ref|ZP_07766210.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis DAPTO 512]
gi|312909837|ref|ZP_07768685.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis DAPTO 516]
gi|256952663|gb|EEU69295.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis Merz96]
gi|291079372|gb|EFE16736.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis R712]
gi|291082984|gb|EFE19947.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis S613]
gi|310626247|gb|EFQ09530.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis DAPTO 512]
gi|311289795|gb|EFQ68351.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis DAPTO 516]
Length = 254
Score = 41.0 bits (94), Expect = 0.051, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N +
Sbjct: 157 AQYPTLLMGDFNAESEE-EVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 211 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 248
>gi|154506602|ref|ZP_02043059.1| hypothetical protein RUMGNA_03869 [Ruminococcus gnavus ATCC 29149]
gi|153793355|gb|EDN75777.1| hypothetical protein RUMGNA_03869 [Ruminococcus gnavus ATCC 29149]
Length = 363
Score = 41.0 bits (94), Expect = 0.051, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 44/129 (34%), Gaps = 15/129 (11%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKI--------NSIGDTD----DFWQKMDPDGLL 52
Q L + ++ G V GDFN+ + D +++ PD +
Sbjct: 238 QLRMLFEDMKEEYDAGNYIVAGGDFNKDLLGNSAEIFGHKELEDNWAKPISEELIPDFMQ 297
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ P ++++ + FL+ ++ ++ D K S H
Sbjct: 298 LIAPFDEKNPVPSCRNADQPYSESDFVVTVDGFLVSDNVTVEDALVLDT---GFKWSDHN 354
Query: 113 PLTIEYDFE 121
P+ +++ E
Sbjct: 355 PVYMDFILE 363
>gi|19074386|ref|NP_585892.1| CLASS II (DNA LYASE) APURINIC APYRIMIDIC ENDONUCLEASE
[Encephalitozoon cuniculi GB-M1]
gi|19069028|emb|CAD25496.1| CLASS II (DNA LYASE) APURINIC APYRIMIDIC ENDONUCLEASE
[Encephalitozoon cuniculi GB-M1]
Length = 338
Score = 41.0 bits (94), Expect = 0.051, Method: Composition-based stats.
Identities = 11/72 (15%), Positives = 15/72 (20%), Gaps = 4/72 (5%)
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ ES D + D S
Sbjct: 249 DAYRALCKRPESYTCWNTMLNLRPRNLGTRIDYILIPARFLNRLKDCDI----QPEIHGS 304
Query: 110 THCPLTIEYDFE 121
HCP+ E DF+
Sbjct: 305 DHCPVYAEIDFD 316
>gi|257453584|ref|ZP_05618874.1| endonuclease/exonuclease/phosphatase [Enhydrobacter aerosaccus
SK60]
gi|257449042|gb|EEV23995.1| endonuclease/exonuclease/phosphatase [Enhydrobacter aerosaccus
SK60]
Length = 262
Score = 41.0 bits (94), Expect = 0.052, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 39/118 (33%), Gaps = 14/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E + ++ + +I P ++AGDFN W+K+ L ++
Sbjct: 156 EKQYEVMSQYINNEIDQSTPLILAGDFND-----------WKKLSCQKLGCDLNLQEAVL 204
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + + + S LS H P++ E
Sbjct: 205 TH-HGKLLPTFPAKLPVLSLDRIYVR-NLQVHRAWVHKGQP-WSNLSDHLPVSAEVSL 259
>gi|319777367|ref|YP_004137018.1| putative membrane nuclease a [Mycoplasma fermentans M64]
gi|238809543|dbj|BAH69333.1| hypothetical protein [Mycoplasma fermentans PG18]
gi|318038442|gb|ADV34641.1| Putative membrane nuclease A [Mycoplasma fermentans M64]
Length = 647
Score = 41.0 bits (94), Expect = 0.052, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 34/144 (23%), Gaps = 27/144 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKIN------SIGDTDDFWQKMDPD-----------GL 51
L W DQ+ + GD N K+ S D +++ + D
Sbjct: 503 LMDWFDQQDGDNDDLIFVGDTNIKLGNQATAFSEILKDQYYKALLTDSKQHKSSLSNSTW 562
Query: 52 LIRFPQEKESTCNVIKRN---KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR--- 105
+ + Y + + D T
Sbjct: 563 GKYSEPYDKIFTRTNLKYENANFFPLYDIFKDNILKDYQTIEEWKTYVDTIRKKTYDKDL 622
Query: 106 ----SKLSTHCPLTIEYDFEKGNV 125
+S H P+ + + ++
Sbjct: 623 KYIFHAISDHSPIYFDLILDPNDI 646
>gi|282881078|ref|ZP_06289765.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
timonensis CRIS 5C-B1]
gi|281304882|gb|EFA96955.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
timonensis CRIS 5C-B1]
Length = 290
Score = 41.0 bits (94), Expect = 0.052, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 33/119 (27%), Gaps = 8/119 (6%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + ++ K+ +P + GD N + F + M ++
Sbjct: 180 KESAKLIN---NKAKKSVVPLFLIGDLNDSPTWKPEQSAFPELMQKFKIVSDASGSLPEQ 236
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
V + + + + + + S S H P+ + +
Sbjct: 237 PGVTIDY-----VLLGQQHAEKIAVTGTHVVRRLSVKGEQLDLSTASDHYPVFADIRLK 290
>gi|257482179|ref|ZP_05636220.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 380
Score = 41.0 bits (94), Expect = 0.052, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 36/132 (27%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFN--------RKINSIGDTDDFWQKMDPDGLLIR 54
+Q +K D+ G P++I GDFN R ++
Sbjct: 248 QKQVVATEKQLDKLESGGTPWLIGGDFNLLPLGQYQRLPEEQRLGYAADSELHELWEKYP 307
Query: 55 FPQEKESTCNVIKR-----NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + + + + DR S VS DT +S
Sbjct: 308 MIPDNAESSGIDRGKWLTHFPNDSRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--IS 365
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 366 DHLPVIGRFLLP 377
>gi|225463733|ref|XP_002264358.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 462
Score = 41.0 bits (94), Expect = 0.052, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 31/128 (24%), Gaps = 22/128 (17%)
Query: 13 ADQKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIR---------FPQ 57
+KI + GD N ++ W + L Q
Sbjct: 321 VPEKILDHERVIWFGDLNYRIALSYSETRKLLEENAWDALLDKDQLKIEREAGRVFKGWQ 380
Query: 58 EKESTCNVIKRNKSSLD-------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
E + + +++ D R + + Q S+ S
Sbjct: 381 EGKIYFAPTYKYRNNSDTYAGDTTKSKTKRRTPAWCDRILWHGHGIRQLSYIRGESQFSD 440
Query: 111 HCPLTIEY 118
H P+ +
Sbjct: 441 HRPVCATF 448
>gi|226503161|ref|NP_001147113.1| type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Zea mays]
gi|195607324|gb|ACG25492.1| type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Zea mays]
gi|223947803|gb|ACN27985.1| unknown [Zea mays]
Length = 455
Score = 41.0 bits (94), Expect = 0.052, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 32/130 (24%), Gaps = 24/130 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
Q I ++ GD N +I+ W+ + + L +
Sbjct: 283 LPQNILDHDRVILLGDLNYRISLPEAKTRLLVERQDWKTLLENDQLRAEVCRGGAFQGWS 342
Query: 67 ------------------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
++ R + + Q+ D S+L
Sbjct: 343 EGPIGFSPTYKYHPNSDAYYGCATAARGRNKRRAPAWCDRVLWRGAGLAQTRYDRCESRL 402
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 403 SDHRPVRAVF 412
>gi|254883467|ref|ZP_05256177.1| metallophosphoesterase [Bacteroides sp. 4_3_47FAA]
gi|319641746|ref|ZP_07996428.1| metallophosphoesterase [Bacteroides sp. 3_1_40A]
gi|254836260|gb|EET16569.1| metallophosphoesterase [Bacteroides sp. 4_3_47FAA]
gi|317386633|gb|EFV67530.1| metallophosphoesterase [Bacteroides sp. 3_1_40A]
Length = 251
Score = 41.0 bits (94), Expect = 0.053, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 32/120 (26%), Gaps = 25/120 (20%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--FWQKMDPDGLLIRFPQEKEST 62
Q + ++ + P +AGD N +S+ + +++ + D +
Sbjct: 155 QIKSIEVILKEVFSKEKPVFMAGDMNSVPSSLTQKNIRKYFKVLTDDRWITC-------- 206
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ S HCP+ ++ +EK
Sbjct: 207 ---------------NGECIDYIYGYEKKKGKFAVRRKGRIEDHVASDHCPVYVDVYYEK 251
>gi|156838338|ref|XP_001642876.1| hypothetical protein Kpol_1007p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156113453|gb|EDO15018.1| hypothetical protein Kpol_1007p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 529
Score = 41.0 bits (94), Expect = 0.053, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 17/64 (26%), Gaps = 5/64 (7%)
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD---F 120
+ + L+ L S HCP+ ++ D F
Sbjct: 308 YTVWNTLKNTRPVNYGSRIDFILLSKELQDYILQADILP--DVMGSDHCPVYLDIDSNFF 365
Query: 121 EKGN 124
KGN
Sbjct: 366 TKGN 369
>gi|322497972|emb|CBZ33047.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 447
Score = 41.0 bits (94), Expect = 0.053, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 25/114 (21%), Gaps = 27/114 (23%)
Query: 23 FVIAGDFNRKINSIGDT----------------------DDFWQKMDPDGLLIRFPQE-K 59
F+ AGD N + Q+ + + +
Sbjct: 330 FIWAGDLNVAERDYDRYYAGTFKSMQECSGFAPEERISFRETMQRTNSVDVFRQLYPHAG 389
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+R F++ + + SY S HCP
Sbjct: 390 PVYSFWSQRINGRPRNLGW--RLDYFVVSS--RLASYVVDCFPMPTVMGSDHCP 439
>gi|307944213|ref|ZP_07659554.1| putative endonuclease/exonuclease/phosphatase [Roseibium sp.
TrichSKD4]
gi|307772559|gb|EFO31779.1| putative endonuclease/exonuclease/phosphatase [Roseibium sp.
TrichSKD4]
Length = 342
Score = 41.0 bits (94), Expect = 0.053, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 14/107 (13%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDD-FWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
++ + P +I GD+N F+ +D GL FP T
Sbjct: 245 RRQQASDSPVIIMGDWNTSP-----WSWHFFTLLDETGLNTAFPNGIPQTTRFFYDY--- 296
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++++ + + + + +D+ + H PL +E
Sbjct: 297 RLHWILGAIVDHVAVSD-----DFQFTDVSLGPDVGTDHLPLEVELQ 338
>gi|302669280|ref|YP_003832430.1| exodeoxyribonuclease III Xth [Butyrivibrio proteoclasticus B316]
gi|302396944|gb|ADL35848.1| exodeoxyribonuclease III Xth [Butyrivibrio proteoclasticus B316]
Length = 216
Score = 41.0 bits (94), Expect = 0.053, Method: Composition-based stats.
Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 24/140 (17%)
Query: 2 LSQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------- 49
L ++ EW ++ + + P + GD+N I + M
Sbjct: 80 LKERQEWDVQYTKYLKSLDEVKPVISCGDYNVAHEEIDLANPDSNHMSAGFTDEERAGFT 139
Query: 50 --------GLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ + +R K+S FL+ +
Sbjct: 140 NLLSAGFVDTFRHVHGDIPNVYSWWAQRIKTSKIN-NSGWRIDYFLVSDRIKDKVTRSDM 198
Query: 101 LDTRRSKLSTHCPLTIEYDF 120
LD+ + H P+ +E +
Sbjct: 199 LDSGARQ--DHTPIALEIEL 216
>gi|229820609|ref|YP_002882135.1| Endonuclease/exonuclease/phosphatase [Beutenbergia cavernae DSM
12333]
gi|229566522|gb|ACQ80373.1| Endonuclease/exonuclease/phosphatase [Beutenbergia cavernae DSM
12333]
Length = 382
Score = 41.0 bits (94), Expect = 0.053, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 34/134 (25%), Gaps = 19/134 (14%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSI-----------GDTDDFWQKMDPDGLLI 53
Q E ++ D+ + G V+ GD N ++ D DG +
Sbjct: 248 QAEAVRAIVDELVAVGEHVVVLGDLNEGSPAVGQVPVSLAALFESDGPLVSCFDLDGFDV 307
Query: 54 RFPQEKESTCNVIKRNK-----SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---TRR 105
+C + R L + + T
Sbjct: 308 GPRPGTFDSCGIRNRLDYILLSRGLAARFTSGRVFRTGLWGTRVTRPTAWETYPEMLTGT 367
Query: 106 SKLSTHCPLTIEYD 119
+ S H L +E D
Sbjct: 368 HQASDHAALVVELD 381
>gi|59712058|ref|YP_204834.1| nuclease [Vibrio fischeri ES114]
gi|59480159|gb|AAW85946.1| nuclease [Vibrio fischeri ES114]
Length = 889
Score = 41.0 bits (94), Expect = 0.053, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 13/80 (16%)
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------- 107
++ +LD+ + ++ + + ++ +S+L K
Sbjct: 787 HGTDTFSYTYSGELGNLDHALANKSLAKRVAEIEDWHINAAESNLFEYSPKYTGDMVKYN 846
Query: 108 ----LSTHCPLTIEYDFEKG 123
S H P+ I D+EKG
Sbjct: 847 DMYSASDHDPIVITLDYEKG 866
>gi|331015775|gb|EGH95831.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. lachrymans str. M302278PT]
Length = 233
Score = 41.0 bits (94), Expect = 0.054, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + L + D ++ G P ++AGDFN + L ++
Sbjct: 132 RQQLKLLAQLMD-RLPEGAPVIVAGDFND-------WRQRADALLQGTGLHEVFVQRFGA 183
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + N+ S S S LS H PL +E
Sbjct: 184 P------AKSFPARWPLLRLDRIYVRNATSHRPKVLSSRPW--SHLSDHAPLAVEVTL 233
>gi|307822071|ref|ZP_07652303.1| Endonuclease/exonuclease/phosphatase [Methylobacter tundripaludum
SV96]
gi|307736637|gb|EFO07482.1| Endonuclease/exonuclease/phosphatase [Methylobacter tundripaludum
SV96]
Length = 502
Score = 41.0 bits (94), Expect = 0.054, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 4/118 (3%)
Query: 5 QGEWLKKWADQKIKTGIPF-VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE--KES 61
Q + L +WA+ K + ++ GDFN S G D L Q ++
Sbjct: 383 QFQRLCEWAEAKQSAHVNTTLLCGDFNIAAGSTGYHLVVDGHQYDDQYLAANSQGVFEKI 442
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ L D + + S + ++S HC + ++
Sbjct: 443 FRVNDPYWQNYLSD-DYRIDYIFLNKTSELQVFSAKVLFTEQDYGRVSDHCGYFMTFE 499
>gi|290978740|ref|XP_002672093.1| predicted protein [Naegleria gruberi]
gi|284085667|gb|EFC39349.1| predicted protein [Naegleria gruberi]
Length = 1049
Score = 41.0 bits (94), Expect = 0.054, Method: Composition-based stats.
Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 7/106 (6%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+++GDFN + + ++ + D ++ T + +
Sbjct: 897 PNVILSGDFNAGCSYVSNSQWSQVALRTDTRFSWLISDQADTTVAVSSCPYDRFVIFQNA 956
Query: 81 DNKNFLIDNSFSIVSYDQSDLD-------TRRSKLSTHCPLTIEYD 119
+N + F + D T + +S H P+ + +
Sbjct: 957 AKRNITTGDGFEYSNVGIFRFDSEYGFNTTYAATVSDHYPIYMSIN 1002
>gi|254000148|ref|YP_003052211.1| Endonuclease/exonuclease/phosphatase [Methylovorus sp. SIP3-4]
gi|253986827|gb|ACT51684.1| Endonuclease/exonuclease/phosphatase [Methylovorus sp. SIP3-4]
Length = 250
Score = 41.0 bits (94), Expect = 0.054, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 32/116 (27%), Gaps = 14/116 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L+ + I P VIAGDFN S G ++ +
Sbjct: 147 KQFGALRDYIHAVIPEDAPLVIAGDFNDWRLSAGHQ--VMDGLNMREVFEHA-------- 196
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + F+I S S H L+ +
Sbjct: 197 ---HGKPARSFPSMFPLFRLDRIYVRGFNIHSAHVHGGPRTALT-SDHAALSAVLE 248
>gi|218131485|ref|ZP_03460289.1| hypothetical protein BACEGG_03103 [Bacteroides eggerthii DSM 20697]
gi|317476445|ref|ZP_07935694.1| endonuclease/Exonuclease/phosphatase [Bacteroides eggerthii
1_2_48FAA]
gi|217986417|gb|EEC52754.1| hypothetical protein BACEGG_03103 [Bacteroides eggerthii DSM 20697]
gi|316907471|gb|EFV29176.1| endonuclease/Exonuclease/phosphatase [Bacteroides eggerthii
1_2_48FAA]
Length = 366
Score = 41.0 bits (94), Expect = 0.054, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 27/111 (24%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + K ++ GDFN S Q ++ +
Sbjct: 268 QADTIAKEIAS--SRHPSIIVCGDFNDTPISYT-HRVIAQNLND------AFTQSGRGLG 318
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
V N LI + + + K S H P+
Sbjct: 319 VSYNQNKFYF------RIDNILISKNLQSYNCTVD----QSIKESDHYPIW 359
>gi|332322171|emb|CCA66178.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1381
Score = 41.0 bits (94), Expect = 0.054, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 21/126 (16%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--------QKMDPDGLLIRFPQ 57
E ++ + + P ++ GDFN +N ++ + D L+ P
Sbjct: 119 AEVWRELLEFQKNNPRPCLVIGDFNEVLNENERGSHYFSQTGSTNFKDFVQDSHLLEIPP 178
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI- 116
++S LD ++ + I + + + LS HCPL +
Sbjct: 179 ACGGFTWFRGNSRSILDRLFVNPE----------WITNLPNLRVSLLQRGLSDHCPLLVH 228
Query: 117 --EYDF 120
E D+
Sbjct: 229 NKELDW 234
>gi|297171763|gb|ADI22754.1| metal-dependent hydrolase [uncultured Rhizobium sp. HF0500_29J11]
Length = 248
Score = 41.0 bits (94), Expect = 0.054, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 20/118 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + ++ +P V+ GD N Q G L F ++
Sbjct: 133 KRQARAVLDQLAS-LEEPLPTVMMGDLN-------------QWNTEGGCLAHFAEDHHVI 178
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + +I + V R S H P+ +
Sbjct: 179 ------APGLSFHSQMPFVSFDRIITSLDIHVDAAAVHSSERARLASDHLPVWADLSL 230
>gi|291515593|emb|CBK64803.1| Metal-dependent hydrolase [Alistipes shahii WAL 8301]
Length = 291
Score = 41.0 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 19/118 (16%)
Query: 3 SQQGEWLKKWADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ E + ++ P +AGD N K+ L +
Sbjct: 189 QRSFEIITEYIAANYAAYTKPIYLAGDLNT------------SKLPAAALESWKIISTSA 236
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS-KLSTHCPLTIEY 118
V + S +DY S+ ++ + +S H P+ ++
Sbjct: 237 NTFVNTSSPSRIDYV-----LVYTGNSPSYEVLRTAVPSYEEINVMTVSDHLPVLVDL 289
>gi|270159123|ref|ZP_06187779.1| endonuclease/exonuclease/phosphatase family protein [Legionella
longbeachae D-4968]
gi|289166042|ref|YP_003456180.1| hypothetical protein LLO_2719 [Legionella longbeachae NSW150]
gi|269987462|gb|EEZ93717.1| endonuclease/exonuclease/phosphatase family protein [Legionella
longbeachae D-4968]
gi|288859215|emb|CBJ13149.1| putative conserved hypothetical proteins [Legionella longbeachae
NSW150]
Length = 251
Score = 41.0 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 14/117 (11%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + + P ++AGDFN W+ + L E+
Sbjct: 149 QCNTLMQRIKDVVPQDEPLLMAGDFND-----------WRTIISKPLADYLNIEEAFVSI 197
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ +S ++ + V+ Q LS H PL ++ +
Sbjct: 198 EGQHARSFPAIRPSLCIDRVYFRGMKVQEVACLQGKPWR---MLSDHLPLYARFELK 251
>gi|257086588|ref|ZP_05580949.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis D6]
gi|256994618|gb|EEU81920.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis D6]
gi|315027790|gb|EFT39722.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX2137]
Length = 254
Score = 41.0 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N +
Sbjct: 157 AQYPTLLMGDFNAESGE-AVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 211 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 248
>gi|256965365|ref|ZP_05569536.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis
HIP11704]
gi|257089645|ref|ZP_05584006.1| predicted protein [Enterococcus faecalis CH188]
gi|307273475|ref|ZP_07554719.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0855]
gi|312903989|ref|ZP_07763158.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0635]
gi|256955861|gb|EEU72493.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis
HIP11704]
gi|256998457|gb|EEU84977.1| predicted protein [Enterococcus faecalis CH188]
gi|306509814|gb|EFM78840.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0855]
gi|310632709|gb|EFQ15992.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0635]
gi|315578337|gb|EFU90528.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0630]
Length = 254
Score = 41.0 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N +
Sbjct: 157 AQYPTLLMGDFNAESGE-AVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 211 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 248
>gi|164654988|ref|XP_001728626.1| hypothetical protein MGL_4225 [Malassezia globosa CBS 7966]
gi|159102507|gb|EDP41412.1| hypothetical protein MGL_4225 [Malassezia globosa CBS 7966]
Length = 342
Score = 41.0 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 30/127 (23%), Gaps = 23/127 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-----------------DDFWQKMDPD 49
E L+K Q + + + GD N + D + + +
Sbjct: 194 EALEKHL-QSLPSDKEVIWCGDLNVVWDDRDLAGASKKWNKAAGYTQAECDAHRRILATN 252
Query: 50 GLLIR--FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN-SFSIVSYDQSDLDTRRS 106
+ + +F+I + S V + +
Sbjct: 253 DMCDAWRECHPDAVGHYTYYGWRGQCRSRGAGWRIDSFIIRKRALSRVKACEIRHEIYG- 311
Query: 107 KLSTHCP 113
S H P
Sbjct: 312 -PSDHVP 317
>gi|330888794|gb|EGH21455.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv. mori
str. 301020]
Length = 380
Score = 41.0 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 36/132 (27%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFN--------RKINSIGDTDDFWQKMDPDGLLIR 54
+Q +K D+ G P++I GDFN R ++
Sbjct: 248 QKQIVATEKQLDKLESGGTPWLIGGDFNLLPLGQYQRLPEEQRLGYAADSELHELWEKYP 307
Query: 55 FPQEKESTCNVIKR-----NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + + + + DR S VS DT +S
Sbjct: 308 MIPDNAESSGIDRGKWLTHFPNDSRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--IS 365
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 366 DHLPVIGRFLLP 377
>gi|315147719|gb|EFT91735.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX4244]
Length = 254
Score = 41.0 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 24/99 (24%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN ++ +K L + + N +
Sbjct: 157 AQYPTLLMGDFNAELGE-AVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 211 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 248
>gi|90419844|ref|ZP_01227753.1| endonuclease/exonuclease/phosphatase family protein [Aurantimonas
manganoxydans SI85-9A1]
gi|90335885|gb|EAS49633.1| endonuclease/exonuclease/phosphatase family protein [Aurantimonas
manganoxydans SI85-9A1]
Length = 248
Score = 41.0 bits (94), Expect = 0.055, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 20/118 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + ++ +P V+ GD N Q G L F ++
Sbjct: 133 KRQARAVLDQLAS-LEEPLPTVMMGDLN-------------QWNTEGGCLAHFAEDHHVI 178
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + +I + V R S H P+ +
Sbjct: 179 ------APGLSFHSQMPFVSFDRIITSLDIHVDAAAVHSSERARLASDHLPVWADLSL 230
>gi|329768187|ref|ZP_08259690.1| hypothetical protein HMPREF0428_01387 [Gemella haemolysans M341]
gi|328838034|gb|EGF87655.1| hypothetical protein HMPREF0428_01387 [Gemella haemolysans M341]
Length = 354
Score = 41.0 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 42/130 (32%), Gaps = 14/130 (10%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNR---KINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q + L ++ D + K G ++ DFN+ + + + L
Sbjct: 228 KAQMKQLLEFIDYEYKKGNYVLVGADFNQSLKTLTQDEINVVPKELWRAENLDKSLLPVG 287
Query: 60 ESTCNVIKRNKSSLDYFVIDRD--------NKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+N + L+ +D ++ ++ ++ + + + S H
Sbjct: 288 FKLVYDESKNSARLNNKPYVKDSEGTYGFIIDGYIASDNIEVLGVETLNQ---EYRYSDH 344
Query: 112 CPLTIEYDFE 121
P+ + Y +
Sbjct: 345 NPVKLRYKLK 354
>gi|322832105|ref|YP_004212132.1| Endonuclease/exonuclease/phosphatase [Rahnella sp. Y9602]
gi|321167306|gb|ADW73005.1| Endonuclease/exonuclease/phosphatase [Rahnella sp. Y9602]
Length = 370
Score = 41.0 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 24/107 (22%), Gaps = 16/107 (14%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
K P ++ GD N S D R R
Sbjct: 235 AKARYPTIVTGDLNDVAWSRTTRLFMKISGLLDPRRGRGMYNTFHASYPFLRWP------ 288
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ F+++ DL S H P+ +E
Sbjct: 289 -----LDHVFHSKDFTLI-----DLKRLDFMGSDHFPILVELALTPS 325
>gi|256762238|ref|ZP_05502818.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis T3]
gi|256683489|gb|EEU23184.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis T3]
Length = 254
Score = 41.0 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N +
Sbjct: 157 AQYPTLLMGDFNAESGE-EVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 211 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 248
>gi|254564277|ref|YP_003071371.1| Endonuclease/exonuclease/phosphatase [Methylobacterium extorquens
DM4]
gi|254265791|emb|CAX17154.1| Endonuclease/exonuclease/phosphatase [Methylobacterium extorquens
DM4]
Length = 352
Score = 41.0 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 16/106 (15%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A + +T P ++AGD N L+ Q + R
Sbjct: 232 AREVAETRGPTIVAGDLNDVA-----WSRTNALFQNISGLLDPRQGRGLFSTFHARYP-- 284
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S ++ S H P+ +E
Sbjct: 285 ----FARWPLDHVFYSE-----HFLLSGMERLGDVGSDHFPIWVEL 321
>gi|255689971|ref|ZP_05413646.1| AP endonuclease domain protein [Bacteroides finegoldii DSM 17565]
gi|260624578|gb|EEX47449.1| AP endonuclease domain protein [Bacteroides finegoldii DSM 17565]
Length = 361
Score = 41.0 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 29/115 (25%), Gaps = 19/115 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + Q + + + + ++ GDFN S Q++D +
Sbjct: 260 IRASQADSVARIITEN--HYPTMIVCGDFNDGSISYT-HRVLTQELDD------AFTQSG 310
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N LI + K S H P+
Sbjct: 311 KGLGISYNQNKFYF------RIDNILISPDLKAYNCTVDRSI----KASDHYPIW 355
>gi|242813026|ref|XP_002486082.1| DNA lyase Apn2 [Talaromyces stipitatus ATCC 10500]
gi|218714421|gb|EED13844.1| DNA lyase Apn2 [Talaromyces stipitatus ATCC 10500]
Length = 642
Score = 41.0 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 15/156 (9%), Positives = 29/156 (18%), Gaps = 45/156 (28%)
Query: 4 QQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------------- 38
+Q L + G ++ GD N + I
Sbjct: 187 RQGFINLLDARIRNLVSMGKRVIVTGDLNISVGEIDSAHLTEAIRKGTGSEDEFVSSPVR 246
Query: 39 ---------------TDDFWQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDN 82
D + + F + R +
Sbjct: 247 RVFNQLVEGAKVVGQRDPAREVPVLHDICRSFHPGRRGMYTCWETRVNA--RPGNYGARI 304
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
L + + + S HCP+ +
Sbjct: 305 DYILSSLDMKDWWSEANIQE--GLMGSDHCPVYATF 338
>gi|332358249|gb|EGJ36077.1| RgfB protein [Streptococcus sanguinis SK355]
Length = 271
Score = 41.0 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K + +K P V+ GDFN + G + +
Sbjct: 159 QGEW-AKLEAELLKAESPLVLMGDFNNPVGQQGYQTILASPLKLQDSHTAAKEASGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + +S H L ++
Sbjct: 218 --EGTIAGWDDNKHALKIDYVFTSQGMDVERSAVVFDGKETPVVSDHFGLEVQVTL 271
>gi|229546085|ref|ZP_04434810.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1322]
gi|256852883|ref|ZP_05558253.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|257085499|ref|ZP_05579860.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis Fly1]
gi|307288462|ref|ZP_07568448.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0109]
gi|307291220|ref|ZP_07571105.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0411]
gi|229308781|gb|EEN74768.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1322]
gi|256711342|gb|EEU26380.1| conserved hypothetical protein [Enterococcus faecalis T8]
gi|256993529|gb|EEU80831.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis Fly1]
gi|306497874|gb|EFM67406.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0411]
gi|306500537|gb|EFM69868.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0109]
gi|315029118|gb|EFT41050.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX4000]
gi|315165454|gb|EFU09471.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1302]
Length = 254
Score = 41.0 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N +
Sbjct: 157 AQYPTLLMGDFNAESGE-AVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 211 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 248
>gi|268592513|ref|ZP_06126734.1| endonuclease/exonuclease/phosphatase family protein [Providencia
rettgeri DSM 1131]
gi|291311920|gb|EFE52373.1| endonuclease/exonuclease/phosphatase family protein [Providencia
rettgeri DSM 1131]
Length = 297
Score = 41.0 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 11/99 (11%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++AGDFN N + + + + +D+ +
Sbjct: 209 ILAGDFNSTANEQPIQEIRY------MWNPVELKGIDYRSWPAVNPAIDIDHIFTFKGQV 262
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + S +S H P+ E + ++
Sbjct: 263 W-----DVKKMEIPTDSKEFQWSSVSDHLPIIAELELQE 296
>gi|28870665|ref|NP_793284.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213969036|ref|ZP_03397176.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato T1]
gi|28853913|gb|AAO56979.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato str. DC3000]
gi|213926335|gb|EEB59890.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato T1]
Length = 237
Score = 41.0 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 35/118 (29%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + L + D ++ G P ++AGDFN + L ++
Sbjct: 136 RQQLKLLAQLMD-RLPEGAPVIVAGDFND-------WRQRADALLQGTGLHEVFVQRFGA 187
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + N+ S S S LS H PL +E
Sbjct: 188 P------AKSFPARWPLLRLDRIYVRNATSHRPKVLSSRPW--SHLSDHAPLAVEVTL 237
>gi|306827920|ref|ZP_07461187.1| exodeoxyribonuclease III [Streptococcus pyogenes ATCC 10782]
gi|304429839|gb|EFM32881.1| exodeoxyribonuclease III [Streptococcus pyogenes ATCC 10782]
Length = 275
Score = 41.0 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 39/143 (27%), Gaps = 33/143 (23%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQK 45
+Q W K+AD ++ T P + GD+N I + +
Sbjct: 141 DRQI-WDHKYADYLTELDTQKPVLATGDYNVAHKEIDLANPSSNRRSPGFTDEERQGFTN 199
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N +
Sbjct: 200 LLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKIN-NTGWRIDYWLASNRI------VDKV 252
Query: 102 DTRRSKLS----THCPLTIEYDF 120
S H P+ ++ D
Sbjct: 253 KRSEMISSGERQDHTPILLDIDL 275
>gi|262383373|ref|ZP_06076509.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262294271|gb|EEY82203.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 246
Score = 41.0 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 27/107 (25%), Gaps = 20/107 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ P +I GDFN + +S + + L
Sbjct: 160 ETMTSENKPILITGDFNMEPDSKEFKAMKQTWRLLSDPTLE--------TYPSDHPRLRL 211
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
DY D + + + S H P+ I+ F
Sbjct: 212 DYIFGDLK------------HEFRIINDQVIDIQSSDHLPIYIDVLF 246
>gi|255019624|ref|ZP_05291704.1| Endonuclease/exonuclease/phosphatase [Acidithiobacillus caldus ATCC
51756]
gi|254970927|gb|EET28409.1| Endonuclease/exonuclease/phosphatase [Acidithiobacillus caldus ATCC
51756]
Length = 269
Score = 41.0 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 29/117 (24%), Gaps = 25/117 (21%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E L ++ + T V+ GD N S L E
Sbjct: 161 RQVEALAEYLVGRQAT----VVMGDLNCGARSPE-------LRLLLRLTGLRQAEPPLAT 209
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ S D+ + D + D LS H + +
Sbjct: 210 FPSWAPRFSFDHILCSPDLEFL--------------DWQRSTEPLSDHLAVLARLRW 252
>gi|77164879|ref|YP_343404.1| endonuclease/exonuclease/phosphatase [Nitrosococcus oceani ATCC
19707]
gi|76883193|gb|ABA57874.1| Endonuclease/exonuclease/phosphatase [Nitrosococcus oceani ATCC
19707]
Length = 355
Score = 41.0 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 29/110 (26%), Gaps = 16/110 (14%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ + P ++AGD N L+ + N +
Sbjct: 230 REVKNSEQPVIVAGDLNDVA-----WSYTTTLFQKTSGLLDPRIGRGMF------NSYNA 278
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ ++ + F +V + + S H P+ I+
Sbjct: 279 KHPLMRWPLDHLFHSEDFLLV-----RIARMPAFGSDHFPIYIKLSLNSN 323
>gi|30018623|ref|NP_830254.1| exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|218231797|ref|YP_002365209.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus B4264]
gi|228956830|ref|ZP_04118615.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|229042269|ref|ZP_04190021.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH676]
gi|229125865|ref|ZP_04254890.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-Cer4]
gi|229143158|ref|ZP_04271590.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST24]
gi|296501195|ref|YP_003662895.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|29894164|gb|AAP07455.1| Exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|218159754|gb|ACK59746.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus B4264]
gi|228640239|gb|EEK96637.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST24]
gi|228657523|gb|EEL13336.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-Cer4]
gi|228727060|gb|EEL78265.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH676]
gi|228802871|gb|EEM49704.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|296322247|gb|ADH05175.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
Length = 263
Score = 41.0 bits (94), Expect = 0.057, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 2/109 (1%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+++ + + GDFN G+ ++ + ++ E T +
Sbjct: 156 DRLMERVDSNKLAFLMGDFNNNARLKGEGYEYMMQKGLYDTYELAIEKDEGTTV--QGEI 213
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S + S T R+ +S H + ++ D
Sbjct: 214 AGWDENKHNLRIDLILCNQSKKVHSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|326929306|ref|XP_003210808.1| PREDICTED: deoxyribonuclease-1-like [Meleagris gallopavo]
Length = 284
Score = 41.0 bits (94), Expect = 0.058, Method: Composition-based stats.
Identities = 9/99 (9%), Positives = 27/99 (27%), Gaps = 3/99 (3%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
GDFN + + ++ + + V + +
Sbjct: 184 NIFFMGDFNADCSYVTAEQWPSIRLRSLSSCEWLIPDS-ADTTVTSTDCAYDRIVACGSA 242
Query: 82 NKNFLIDNSFSIVSYDQ--SDLDTRRSKLSTHCPLTIEY 118
+ + S + ++ + + +S H P+ +
Sbjct: 243 LRQAVEYGSAKVNNFQETLHIQNKDALAISDHFPVEVTL 281
>gi|296130593|ref|YP_003637843.1| Endonuclease/exonuclease/phosphatase [Cellulomonas flavigena DSM
20109]
gi|296022408|gb|ADG75644.1| Endonuclease/exonuclease/phosphatase [Cellulomonas flavigena DSM
20109]
Length = 232
Score = 41.0 bits (94), Expect = 0.058, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 30/120 (25%), Gaps = 14/120 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
S+ + +++ P V+AGD N + + +
Sbjct: 126 SRHVQLVRRHL--LHGDDGPVVVAGDLNERPGGSSWLALRDAAGGLQDAASVAEADLPTF 183
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
V L+D ++ D S H PL ++ +
Sbjct: 184 P-----------ADVPRVRIDAVLVDERLPVLGARVPDEAAVGV-ASDHRPLVVDLHLPE 231
>gi|257052454|ref|YP_003130287.1| Endonuclease/exonuclease/phosphatase [Halorhabdus utahensis DSM
12940]
gi|256691217|gb|ACV11554.1| Endonuclease/exonuclease/phosphatase [Halorhabdus utahensis DSM
12940]
Length = 260
Score = 41.0 bits (94), Expect = 0.058, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 28/102 (27%), Gaps = 9/102 (8%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQ---KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
P V+ GDFN + +V + V
Sbjct: 159 EPVVLTGDFNCVAGEEPYEILTGEDSPLALSGEQERSAEPAHGPPTSVTD-----FENLV 213
Query: 78 IDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEY 118
+R + ++ ++ SD+ S H P+ +E
Sbjct: 214 PNRKIDHVFTTPDVTVGTHGVCSDVYDDGRFPSDHLPVLVEL 255
>gi|209737554|gb|ACI69646.1| Deoxyribonuclease gamma precursor [Salmo salar]
Length = 310
Score = 41.0 bits (94), Expect = 0.058, Method: Composition-based stats.
Identities = 16/100 (16%), Positives = 35/100 (35%), Gaps = 2/100 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GDFN + + ++ D + T + + +
Sbjct: 163 DHIMILGDFNADGSYVTKRGMRNIRIRSDKKFHWVIGDDVDTTANTSNDHTYDRIVMYGD 222
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
D N ++ NS ++ ++ ++ L S H P+ +E
Sbjct: 223 DMLNAMVPNSAKPFNFHKAFRLSKAMALSISDHYPVEVEL 262
>gi|134080888|emb|CAK46405.1| unnamed protein product [Aspergillus niger]
Length = 1094
Score = 41.0 bits (94), Expect = 0.058, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 17/125 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSI----------------GDTDDFWQKMDPDGLL 52
L+ ++ I+ + GDFN +I D D +M
Sbjct: 774 LRFLRNRSIEDHDAVIWLGDFNYRIGLSNQKARELVQQQDFQTLYDNDQLNLQMVAGRAF 833
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDR-DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ + S K N S DY ++ + + + Q + + ++S H
Sbjct: 834 QFYTEGPISFPPTYKYNIGSNDYDTSEKARIPAWCDRILWRGTNLRQINYGSADLRISDH 893
Query: 112 CPLTI 116
P+
Sbjct: 894 RPVWA 898
>gi|297170635|gb|ADI21660.1| metal-dependent hydrolase [uncultured Rhizobium sp. HF0130_09F11]
gi|297171574|gb|ADI22571.1| metal-dependent hydrolase [uncultured Rhizobium sp. HF0500_10F10]
Length = 248
Score = 41.0 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 20/118 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + ++ +P V+ GD N Q G L F ++
Sbjct: 133 KRQARAVLDQLAS-LEEPLPTVMMGDLN-------------QWNTEGGCLAHFAEDHHVI 178
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + +I + V R S H P+ +
Sbjct: 179 ------APGLSFHSQMPFVSFDRIITSLDIHVDAAAVHSSERARLASDHLPVWADLSL 230
>gi|304395362|ref|ZP_07377245.1| Endonuclease/exonuclease/phosphatase [Pantoea sp. aB]
gi|304356656|gb|EFM21020.1| Endonuclease/exonuclease/phosphatase [Pantoea sp. aB]
Length = 248
Score = 41.0 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 35/106 (33%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q + P ++AGDFN Q+++ + + +E V R K+
Sbjct: 161 EQIMHHQGPVIMAGDFNA---------WSRQRINALYRFAQRMKLEEVMFTVDHRRKAFG 211
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 212 RPLDFVFYRDLRVSEASVLVT------------RASDHNPLLVEFS 245
>gi|218130823|ref|ZP_03459627.1| hypothetical protein BACEGG_02418 [Bacteroides eggerthii DSM 20697]
gi|217987167|gb|EEC53498.1| hypothetical protein BACEGG_02418 [Bacteroides eggerthii DSM 20697]
Length = 371
Score = 41.0 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 21/104 (20%), Gaps = 17/104 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
I + P ++ GDFN +S L F Y
Sbjct: 285 IASPHPVLVCGDFNSLPSSYTYRQ------LSGILQDGFKTGGHGYMYTY-------RYA 331
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ Y S H P+ +
Sbjct: 332 KRMLRIDYAFHSSKLDCTDY----YSPDLDLCSDHNPVIFTVKY 371
>gi|147777299|emb|CAN66801.1| hypothetical protein VITISV_015403 [Vitis vinifera]
Length = 965
Score = 41.0 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 17/107 (15%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD---------FWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
G P + GDFN ++ + F Q MD L+ Q S
Sbjct: 156 GEPXCVGGDFNVILSQGERSRQGRVTSAMRRFAQVMDDLELIDLPLQG-GSFTW------ 208
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ F++ +S+ + + +S H P+ IE
Sbjct: 209 GGGLHNQAWARLDRFMVSSSW-LDQFSNVTQKRLSWPISDHFPILIE 254
>gi|12852610|dbj|BAB29476.1| unnamed protein product [Mus musculus]
Length = 278
Score = 41.0 bits (94), Expect = 0.059, Method: Composition-based stats.
Identities = 10/99 (10%), Positives = 23/99 (23%), Gaps = 1/99 (1%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK-SSLDYFVID 79
+ DFN + D ++ + + T +
Sbjct: 177 DDMLFLCDFNADCKYVKAHDWPSIRLRSSEVFKWLIPDSAHTTVGNSDCAYDRIVVSGAH 236
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S + T+ +S H P+ + +
Sbjct: 237 LRRSLKPHSASVHNFQEEFDLDQTQALAISDHFPVEVTF 275
>gi|332667070|ref|YP_004449858.1| endonuclease/exonuclease/phosphatase [Haliscomenobacter hydrossis
DSM 1100]
gi|332335884|gb|AEE52985.1| Endonuclease/exonuclease/phosphatase [Haliscomenobacter hydrossis
DSM 1100]
Length = 1056
Score = 41.0 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 34/137 (24%), Gaps = 27/137 (19%)
Query: 6 GEWLKKWA--DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + W D FV+ GDFN M+ G + P +
Sbjct: 759 VQEILSWVQGDPTRSGDPDFVMLGDFNAYEQEDPI-----TLMEASGYVNLVPAGQSKD- 812
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-----------------SDLDTRRS 106
LD+ + + I++ + D
Sbjct: 813 --FDGFLGDLDHIFASPSMAKQFVGGAKWIINSVESLSRFEYDAADLLPGTADDPIGDEF 870
Query: 107 KLSTHCPLTIEYDFEKG 123
+ S H P+ + +
Sbjct: 871 RCSDHDPVIAGFTLGQT 887
>gi|77917735|ref|YP_355550.1| putative nuclease [Pelobacter carbinolicus DSM 2380]
gi|77543818|gb|ABA87380.1| putative nuclease [Pelobacter carbinolicus DSM 2380]
Length = 375
Score = 41.0 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 12/112 (10%), Positives = 30/112 (26%), Gaps = 19/112 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ +IAGDFN + I + F + ++ + + + +
Sbjct: 269 MKESRPEEADLIIAGDFNLVPSEI-------------KEALHFVPDTVASGSTLNSSGAI 315
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS------KLSTHCPLTIEY 118
+ L + + ++S H P+ +
Sbjct: 316 TQNVYDHVLIHSILATQEMIGHPTVIDVISSASDGHEFYTQVSDHLPVMARF 367
>gi|229148769|ref|ZP_04277019.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus m1550]
gi|228634777|gb|EEK91356.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus m1550]
Length = 263
Score = 41.0 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + + GDFN ++ G + + L ++ ++
Sbjct: 156 DRLMERVDSNKLAFLMGDFNNNARLEGEGYEYMMQKGLYDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S + S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKHNLRIDLILCNQSKKVHSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|254434461|ref|ZP_05047969.1| endonuclease/exonuclease/phosphatase family [Nitrosococcus oceani
AFC27]
gi|207090794|gb|EDZ68065.1| endonuclease/exonuclease/phosphatase family [Nitrosococcus oceani
AFC27]
Length = 353
Score = 41.0 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 29/110 (26%), Gaps = 16/110 (14%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ + P ++AGD N L+ + N +
Sbjct: 228 REVKNSEQPVIVAGDLNDVA-----WSYTTTLFQKTSGLLDPRIGRGMF------NSYNA 276
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ ++ + F +V + + S H P+ I+
Sbjct: 277 KHPLMRWPLDHLFHSEDFLLV-----RIARMPAFGSDHFPIYIKLSLNSN 321
>gi|154492338|ref|ZP_02031964.1| hypothetical protein PARMER_01972 [Parabacteroides merdae ATCC
43184]
gi|154087563|gb|EDN86608.1| hypothetical protein PARMER_01972 [Parabacteroides merdae ATCC
43184]
Length = 353
Score = 41.0 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 27/115 (23%), Gaps = 21/115 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q + + + ++ P ++ GDFN S L + +
Sbjct: 255 AEQADSIHA---EIERSPYPVLVCGDFNDTPASYTYH-----------QLRKGLTDGFRD 300
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
C + Y + D S H +
Sbjct: 301 CGSGYQYTFRQLYKLW--RIDYVFYSEFLKGQDCFSPDAPY-----SDHNMVVWR 348
>gi|2129709|pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase [Arabidopsis thaliana]
Length = 1333
Score = 41.0 bits (94), Expect = 0.060, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 28/111 (25%), Gaps = 15/111 (13%)
Query: 17 IKTGIPFVIAGDFN---------RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
I P+ + GDFN + + M ++ P
Sbjct: 127 INRKEPWCMLGDFNPILHNGEKRGGPRRGDSSFLPFTDMLDSCDMLELPSIGNPFTW--- 183
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + N + S+ + + S H P+ +
Sbjct: 184 ---GGKTNEMWIQSRLDRCFGNKNWFRFFPISNQEFLDKRGSDHRPVLVRL 231
>gi|317034329|ref|XP_001396144.2| inositol-1,4,5-trisphosphate 5-phosphatase 1 [Aspergillus niger CBS
513.88]
Length = 1069
Score = 41.0 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 17/125 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSI----------------GDTDDFWQKMDPDGLL 52
L+ ++ I+ + GDFN +I D D +M
Sbjct: 749 LRFLRNRSIEDHDAVIWLGDFNYRIGLSNQKARELVQQQDFQTLYDNDQLNLQMVAGRAF 808
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDR-DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ + S K N S DY ++ + + + Q + + ++S H
Sbjct: 809 QFYTEGPISFPPTYKYNIGSNDYDTSEKARIPAWCDRILWRGTNLRQINYGSADLRISDH 868
Query: 112 CPLTI 116
P+
Sbjct: 869 RPVWA 873
>gi|298483187|ref|ZP_07001367.1| endonuclease/exonuclease/phosphatase [Bacteroides sp. D22]
gi|298270704|gb|EFI12285.1| endonuclease/exonuclease/phosphatase [Bacteroides sp. D22]
Length = 305
Score = 41.0 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 10/117 (8%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ E + + G+P ++ DFN++I+S + M L K S
Sbjct: 197 KSMEVIVNKMSELNPEGLPMLLTADFNKQIDS-DIFNGVKTFMTNVRLSAPITDSKYSYT 255
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
N +D+ + + +S H P+ + ++
Sbjct: 256 GFGTANPYIVDHIFCTGFKALKFET---------IDKVYQNITYISDHYPIIGKLEY 303
>gi|254295374|ref|YP_003061397.1| endonuclease/exonuclease/phosphatase [Hirschia baltica ATCC 49814]
gi|254043905|gb|ACT60700.1| Endonuclease/exonuclease/phosphatase [Hirschia baltica ATCC 49814]
Length = 315
Score = 41.0 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 23/138 (16%)
Query: 5 QGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIG--DTDDFWQKMDPDGLLIRFP---Q 57
+ + ++ +Q+ ++ GDFN G D + DG I +
Sbjct: 177 EAKAVRILIEQRFADPEAENWIALGDFNDYFELDGATLFDHGLGPLIRDGFAIDAGVTLE 236
Query: 58 EKESTCNVIKRNKSS----LDYFVIDRDNKNFLIDNSFSIVSYDQS------------DL 101
+ + LD+ + D IV Q +
Sbjct: 237 KSPLNRWTHYYSHGDVYGALDHIFMSPSLAARNQDARLRIVRAGQPLRANRYKGHRFGGV 296
Query: 102 DTRRSKLSTHCPLTIEYD 119
R K S HCPL++
Sbjct: 297 GWMRPKSSDHCPLSVTLS 314
>gi|255532876|ref|YP_003093248.1| endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
gi|255345860|gb|ACU05186.1| Endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
Length = 282
Score = 41.0 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 31/122 (25%), Gaps = 20/122 (16%)
Query: 2 LSQQGEWL--KKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
L++ L ++ P ++ GDFN S E
Sbjct: 178 LAESNRELHARELLKAIQPYKDSPVIVGGDFNMPPTS--------------DTWNIIKTE 223
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
C S+ + L++ S +S S H P+ E
Sbjct: 224 MTMGCTT---CPSTFPATNPNTTIDYLLLNKQASGYFSIKSYQTIAERYASDHVPIIAEL 280
Query: 119 DF 120
+
Sbjct: 281 QY 282
>gi|150021512|ref|YP_001306866.1| endonuclease/exonuclease/phosphatase [Thermosipho melanesiensis
BI429]
gi|149794033|gb|ABR31481.1| Endonuclease/exonuclease/phosphatase [Thermosipho melanesiensis
BI429]
Length = 350
Score = 41.0 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 18/132 (13%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +Q +++ K A + + G VI GD+N + S + + E
Sbjct: 226 LREKQLKFIMKLAKNEYEKGNYVVIGGDWNSEFYSE----KLFGYTEEKPEAYIKLPELF 281
Query: 61 STCNVIKR-----------NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + F + + I+ + DL + S
Sbjct: 282 KLNGWKWGISKNAPTNRSISAPYVKGETFVTVIDGFYVSPNIEILEVENLDL---GFEYS 338
Query: 110 THCPLTIEYDFE 121
H P+ ++ +
Sbjct: 339 DHNPVVMKIMLK 350
>gi|115451797|ref|NP_001049499.1| Os03g0238300 [Oryza sativa Japonica Group]
gi|108707070|gb|ABF94865.1| Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative,
expressed [Oryza sativa Japonica Group]
gi|113547970|dbj|BAF11413.1| Os03g0238300 [Oryza sativa Japonica Group]
gi|215765312|dbj|BAG87009.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768554|dbj|BAH00783.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 495
Score = 41.0 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 36/136 (26%), Gaps = 25/136 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLI-RFPQEKESTCNV 65
QKI ++ GD N +I+ W+ + + L E +
Sbjct: 316 LPQKILDHDRVILLGDLNYRISLPEAKTRLLVERQDWKTLLENDQLRSEVESEGGAFHGW 375
Query: 66 I------------------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+S R + + Q D S+
Sbjct: 376 NEGAIAFSPTYKYYPNSDTYYGCASHGRKGEKRRAPAWCDRILWRGAGLKQKRYDRCESR 435
Query: 108 LSTHCPLTIEYDFEKG 123
LS H P+ ++ E G
Sbjct: 436 LSDHRPVRALFEVEVG 451
>gi|257464350|ref|ZP_05628728.1| hypothetical protein FuD12_10992 [Fusobacterium sp. D12]
Length = 217
Score = 41.0 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 7/123 (5%)
Query: 4 QQGEWLK--KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ E +K + + +IAGDFN + D + D + +
Sbjct: 99 EAAELVKVYDYFQDRDIKENDILIAGDFNLSASDKAF-DSLYNHRDNITCTLDPKTKTTV 157
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
S+ D I + S IV + R K+S H P+ IE + +
Sbjct: 158 GTK---GLSSAYDNIFISKKYTTEYTGKS-GIVDFTNKKYGEARKKISDHLPIYIEVNTD 213
Query: 122 KGN 124
K +
Sbjct: 214 KDD 216
>gi|229108038|ref|ZP_04237664.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock1-15]
gi|228675438|gb|EEL30656.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock1-15]
Length = 263
Score = 41.0 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 2/109 (1%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+++ + + GDFN G+ ++ + ++ E T +
Sbjct: 156 DRLMERVDSNKLAFLMGDFNNNARLKGEGYEYMMQKGLYDTYELAIEKDEGTTV--QGEI 213
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S + S T R+ +S H + ++ D
Sbjct: 214 AGWDENKHNLRIDLILCNQSKKVHSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|170029427|ref|XP_001842594.1| o-linked N-acetyl glucosamine transferase [Culex quinquefasciatus]
gi|167862425|gb|EDS25808.1| o-linked N-acetyl glucosamine transferase [Culex quinquefasciatus]
Length = 840
Score = 41.0 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 10/113 (8%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
LK + + ++IAGD N K W + + + ++
Sbjct: 484 SAAKLKSDIQKLTRRSAKYIIAGDLNAKHE-------VWGNSRRNRNGVILHNDLQNG-- 534
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
S + R + +ID + ++ + + + S H P+ +E
Sbjct: 535 -YYNVVSPDRPTRVARSGNHSIIDFFITNMAENVAHPEVFEELSSDHYPVVVE 586
>gi|239995602|ref|ZP_04716126.1| Endonuclease/exonuclease/phosphatase [Alteromonas macleodii ATCC
27126]
Length = 232
Score = 41.0 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 35/123 (28%), Gaps = 20/123 (16%)
Query: 3 SQQGEWLKKWAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q L + + + IP V+AGDFN + + + FP
Sbjct: 129 RSQFSLLHEHLSLKMKEKQIPLVLAGDFNEWQFFSKAFKALNELLLQQKVGATFPSH--- 185
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + + R LS H P+ ++ +
Sbjct: 186 ---------------FPVFALDRVWVSDDIKVKACRKLKNAKTRI-LSDHLPVLVDIELP 229
Query: 122 KGN 124
+ +
Sbjct: 230 QND 232
>gi|229077725|ref|ZP_04210355.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock4-2]
gi|228705666|gb|EEL58022.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock4-2]
Length = 263
Score = 41.0 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + + GDFN + G + + L ++ ++
Sbjct: 156 DRLMERVDSNKLAFLMGDFNNNAWLEGEGYEYMMQKGLYDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S + S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKHNLRIDLILCNQSKKVHSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|218197009|gb|EEC79436.1| hypothetical protein OsI_20414 [Oryza sativa Indica Group]
gi|222632046|gb|EEE64178.1| hypothetical protein OsJ_19010 [Oryza sativa Japonica Group]
Length = 558
Score = 41.0 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 18/141 (12%), Positives = 39/141 (27%), Gaps = 30/141 (21%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF--------------- 55
+ +KI + GD N +I+ +D + + + F
Sbjct: 383 RRIPEKILDHDRVIWLGDLNYRISLS--YEDTKKLLTENNWDALFEKDQLNIERKSGRVF 440
Query: 56 --PQEKESTCNVIKRNKSSLDY-------FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
E++ + S+ D R + + Q S
Sbjct: 441 KGWSEEKIYFAPTYKYSSNSDSYAGETATSKKKRRTPAWCDRILWHGDGIVQLSYFRGES 500
Query: 107 KLSTHCPL----TIEYDFEKG 123
K S H P+ ++ + ++
Sbjct: 501 KFSDHRPVCGTFIVDVEIQES 521
>gi|115464579|ref|NP_001055889.1| Os05g0489000 [Oryza sativa Japonica Group]
gi|50511362|gb|AAT77285.1| 'putative inositol-1, 4, 5-trisphosphate 5-phosphatase' [Oryza
sativa Japonica Group]
gi|113579440|dbj|BAF17803.1| Os05g0489000 [Oryza sativa Japonica Group]
Length = 552
Score = 41.0 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 18/141 (12%), Positives = 39/141 (27%), Gaps = 30/141 (21%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF--------------- 55
+ +KI + GD N +I+ +D + + + F
Sbjct: 377 RRIPEKILDHDRVIWLGDLNYRISLS--YEDTKKLLTENNWDALFEKDQLNIERKSGRVF 434
Query: 56 --PQEKESTCNVIKRNKSSLDY-------FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
E++ + S+ D R + + Q S
Sbjct: 435 KGWSEEKIYFAPTYKYSSNSDSYAGETATSKKKRRTPAWCDRILWHGDGIVQLSYFRGES 494
Query: 107 KLSTHCPL----TIEYDFEKG 123
K S H P+ ++ + ++
Sbjct: 495 KFSDHRPVCGTFIVDVEIQES 515
>gi|71737405|ref|YP_272561.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|257481811|ref|ZP_05635852.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tabaci ATCC 11528]
gi|289627987|ref|ZP_06460941.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. aesculi str. NCPPB3681]
gi|289646455|ref|ZP_06477798.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. aesculi str. 2250]
gi|298485207|ref|ZP_07003300.1| Endonuclease/exonuclease/phosphatase family protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|71557958|gb|AAZ37169.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298160195|gb|EFI01223.1| Endonuclease/exonuclease/phosphatase family protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|320322199|gb|EFW78295.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. glycinea str. B076]
gi|320331850|gb|EFW87788.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330866580|gb|EGH01289.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330872976|gb|EGH07125.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330986813|gb|EGH84916.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|331009446|gb|EGH89502.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tabaci ATCC 11528]
Length = 291
Score = 41.0 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 22/113 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ I V+ GD N N + + L + PQ + + + +
Sbjct: 186 AYIRDLIGGYRHQVLMGDMNTHANDLLEHSPL------RDLGLLAPQIEATFPSWRPQR- 238
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+ + ++ +S H P+ +E
Sbjct: 239 ----------CLDHILLSPTLTLERVQVLAQP-----ISDHLPVAVEIRLPDS 276
>gi|77461257|ref|YP_350764.1| aminoacyl-tRNA hydrolase [Pseudomonas fluorescens Pf0-1]
gi|77385260|gb|ABA76773.1| Endonuclease/exonuclease/phosphatase family protein [Pseudomonas
fluorescens Pf0-1]
Length = 265
Score = 41.0 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 16/116 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q LKK + + P ++AGDFN D + +
Sbjct: 166 QLALLKKRLAE-LPEDAPVIVAGDFNDWRQRA---DALLEPCGLREVFAAHH-------- 213
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R+ S + + N + ++ S LS H PL++E +
Sbjct: 214 --GRSARSFPARLPLLRLDRIYVSNLKASQPKVLANRPW--SHLSDHAPLSVEIEL 265
>gi|330952963|gb|EGH53223.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae Cit 7]
Length = 380
Score = 41.0 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 36/131 (27%), Gaps = 15/131 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD--PDGLLIRFPQEKE- 60
+Q + D+ G P++I GDFN Q++ D L ++
Sbjct: 249 KQVAATETQLDKLESGGTPWLIGGDFNLLPLGQYQRLPEEQRLGYAADSELHALWEKYPM 308
Query: 61 ----------STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + DR S VS DT +S
Sbjct: 309 IPDNAESSGIDRSKWLTHFPNDSRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--ISD 366
Query: 111 HCPLTIEYDFE 121
H P+ +
Sbjct: 367 HLPVIGRFLLP 377
>gi|307708912|ref|ZP_07645372.1| endonuclease/Exonuclease/phosphatase family protein [Streptococcus
mitis SK564]
gi|307620248|gb|EFN99364.1| endonuclease/Exonuclease/phosphatase family protein [Streptococcus
mitis SK564]
Length = 271
Score = 41.0 bits (94), Expect = 0.062, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 32/117 (27%), Gaps = 3/117 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW ++ + P ++AGDFN G + ++S
Sbjct: 158 QGEW-ARFESVLKELNKPLLLAGDFNNPAGQEGYQAILASPLGLQDAFEVAQ--EKSGSY 214
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ ++ + ++S H L +++
Sbjct: 215 TVPPEIDGWKGNTEPLRIDYIFTTQELAVEHLHVVFDGNKSPQVSDHYGLNAILNWK 271
>gi|315151420|gb|EFT95436.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0012]
Length = 254
Score = 41.0 bits (94), Expect = 0.063, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N +
Sbjct: 157 AQYPTLLMGDFNAESGE-EVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 211 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 248
>gi|62078909|ref|NP_001014110.1| endonuclease/exonuclease/phosphatase family domain-containing
protein 1 [Rattus norvegicus]
gi|81883711|sp|Q5XI74|EEPD1_RAT RecName: Full=Endonuclease/exonuclease/phosphatase family
domain-containing protein 1
gi|53733575|gb|AAH83816.1| Endonuclease/exonuclease/phosphatase family domain containing 1
[Rattus norvegicus]
gi|68533864|gb|AAH99214.1| Endonuclease/exonuclease/phosphatase family domain containing 1
[Rattus norvegicus]
gi|149027895|gb|EDL83355.1| similar to RIKEN cDNA 2310005P05 [Rattus norvegicus]
Length = 569
Score = 41.0 bits (94), Expect = 0.063, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 14/118 (11%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ +K VI GDF + +S + + N+ RN
Sbjct: 433 LQETLKGEKDVVILGDFGQGPDSSDYD------ILRREKFHHLIPAH-TFTNISTRNPQG 485
Query: 73 L---DYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
D I + K + + + D + S HCP+ E EK
Sbjct: 486 SKSVDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAELYMEKD 543
>gi|289768186|ref|ZP_06527564.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|289698385|gb|EFD65814.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 293
Score = 41.0 bits (94), Expect = 0.063, Method: Composition-based stats.
Identities = 11/104 (10%), Positives = 24/104 (23%), Gaps = 21/104 (20%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
G + GDFN + + W+++ G ++
Sbjct: 205 PGAHQFLLGDFNAEPAAPEL-APLWKELSDAGA----------------GTPATYPAQAP 247
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ I + S H P+ + +
Sbjct: 248 VKRIDYVTAGKDVRIRRTAVPEEPA----ASDHRPVVADVSLPR 287
>gi|260428188|ref|ZP_05782167.1| endonuclease/exonuclease/phosphatase [Citreicella sp. SE45]
gi|260422680|gb|EEX15931.1| endonuclease/exonuclease/phosphatase [Citreicella sp. SE45]
Length = 304
Score = 41.0 bits (94), Expect = 0.063, Method: Composition-based stats.
Identities = 12/116 (10%), Positives = 29/116 (25%), Gaps = 14/116 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ E + + I G P ++AGD N ++ D L +
Sbjct: 201 RRSAELIARRLTAVIDAGTPVILAGDLNA------LRGWRVMRILQDAGLRFPRVPAATY 254
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + + + H P+ ++
Sbjct: 255 H--------LNRGVHLLPAIDHIGLAGLDATGGPYVPQMQPGGVWPTDHHPVVLDL 302
>gi|149280306|ref|ZP_01886428.1| endonuclease/exonuclease/phosphatase family protein [Pedobacter sp.
BAL39]
gi|149228995|gb|EDM34392.1| endonuclease/exonuclease/phosphatase family protein [Pedobacter sp.
BAL39]
Length = 370
Score = 41.0 bits (94), Expect = 0.063, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 21/118 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + +K IP++IAGDFN S +M +
Sbjct: 274 QVDLMKAHMG---NCSIPYLIAGDFNDTPASY-----AATQMTKSLKSTFREKGSGFGQT 325
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + ++++ KLS H P+ + +
Sbjct: 326 YNGKFPNFQ--------IDYIAVTKDIEVLNHLVIPA-----KLSDHFPVRSDLRLTR 370
>gi|269124631|ref|YP_003298001.1| endonuclease/exonuclease/phosphatase [Thermomonospora curvata DSM
43183]
gi|268309589|gb|ACY95963.1| Endonuclease/exonuclease/phosphatase [Thermomonospora curvata DSM
43183]
Length = 268
Score = 41.0 bits (94), Expect = 0.064, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 25/119 (21%), Gaps = 17/119 (14%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + + P V+ GDFN DF
Sbjct: 158 QLTALARLVQEIED---PVVVCGDFNVA-RDSTLHRDFLATTGLVDAFAGSCPPTFH--- 210
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD---QSDLDTRR--SKLSTHCPLTIEY 118
+ L L+ S + S S LS H L
Sbjct: 211 -----SAYLKPGQRPHCIDFILVAKSIGVESTGTLFTDREPLAGGPSYLSDHIGLYARL 264
>gi|56756601|gb|AAW26473.1| SJCHGC04525 protein [Schistosoma japonicum]
Length = 162
Score = 41.0 bits (94), Expect = 0.064, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 5/115 (4%)
Query: 4 QQGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q+ L + +Q +K +I GD N + + D + +
Sbjct: 44 QEANDLYNFVNQVMKIWNTQDLIILGDMNADCGYLSRKKMEQLHLRKDTKFTWIIPD-KY 102
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPL 114
+ K + + + + K + S + + ++S H P+
Sbjct: 103 DTTLGKGDCAYDRIIIHGKQLKQAIKPGSAKAYQFPIELKINNQLAKQVSDHYPV 157
>gi|257415859|ref|ZP_05592853.1| predicted protein [Enterococcus faecalis AR01/DG]
gi|257157687|gb|EEU87647.1| predicted protein [Enterococcus faecalis ARO1/DG]
Length = 278
Score = 41.0 bits (94), Expect = 0.064, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L K + N +
Sbjct: 181 AQYPTLLMGDFNAESGE-AVHQLVQKKFQDSKNLATHYGPKGTFQNFTYT-----KPWAE 234
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 235 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 272
>gi|15674547|ref|NP_268721.1| putative 3'-exo-deoxyribonuclease [Streptococcus pyogenes M1 GAS]
gi|13621652|gb|AAK33442.1| putative 3'-exo-deoxyribonuclease [Streptococcus pyogenes M1 GAS]
Length = 275
Score = 41.0 bits (94), Expect = 0.064, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 38/143 (26%), Gaps = 33/143 (23%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQK 45
+Q W K+AD ++ P + GD+N I + +
Sbjct: 141 DRQI-WDHKYADYLTELDAQKPVLATGDYNVAHKEIDLANPNSNRRSPGFTDEERQGFTN 199
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N +
Sbjct: 200 LLARGFTDTFRHVHGDIPHVYTWWAQRSKTSKIN-NTGWRIDYWLASNRL------VDKV 252
Query: 102 DTRRSKLS----THCPLTIEYDF 120
S H P+ ++ D
Sbjct: 253 KRSEMISSGERQDHTPILLDIDL 275
>gi|320170231|gb|EFW47130.1| synaptojanin-PB [Capsaspora owczarzaki ATCC 30864]
Length = 1161
Score = 40.6 bits (93), Expect = 0.065, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 26/121 (21%), Gaps = 17/121 (14%)
Query: 17 IKTGIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLIRFPQEKEST-------- 62
I GDFN +I+ + + L +
Sbjct: 703 INNHDIVFWIGDFNYRIDLPKEEVEGCVKNGDLATLYEADQLRIQRENGAVFAGFVEAPI 762
Query: 63 ---CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
S + + + + D + K S H P+ +D
Sbjct: 763 IFVPTYKYDLYSDVFDTSEKARAPAWCDRVLWRGENVDVLTYNRAELKSSDHRPVYATFD 822
Query: 120 F 120
Sbjct: 823 L 823
>gi|242047432|ref|XP_002461462.1| hypothetical protein SORBIDRAFT_02g003036 [Sorghum bicolor]
gi|241924839|gb|EER97983.1| hypothetical protein SORBIDRAFT_02g003036 [Sorghum bicolor]
Length = 1203
Score = 40.6 bits (93), Expect = 0.065, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 43/120 (35%), Gaps = 15/120 (12%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQE 58
E+L + K PF+I GDFN+ + +D ++++ D L
Sbjct: 987 EFLNEIRAVKSSAPGPFLICGDFNQIYQAADKNNDRLDYRSMRRFRRLIDDCRLEELYLH 1046
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+R + +L+ +++++ + SD S H PL +E
Sbjct: 1047 GRLFTWSNERRRPTLERIDHAFASQDWIEAFPRHHLRCLSSDC-------SDHAPLLLEL 1099
>gi|149369522|ref|ZP_01889374.1| hypothetical protein SCB49_06842 [unidentified eubacterium SCB49]
gi|149356949|gb|EDM45504.1| hypothetical protein SCB49_06842 [unidentified eubacterium SCB49]
Length = 311
Score = 40.6 bits (93), Expect = 0.065, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 31/120 (25%), Gaps = 16/120 (13%)
Query: 15 QKIKTGIPFVIAGDFNRKINSI--------GDTDDFWQKMDPDG-------LLIRFPQEK 59
+K + +I GDFN S + + D F Q
Sbjct: 189 KKTEPDARIIIMGDFNDDPQSDSISQLVGTDFYNPMELLLTRDDGSTNYRGKWNLFDQIL 248
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS-FSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S + + ++ +I + + + +S H P+ +
Sbjct: 249 VSNNFMKPYDNPFTFEKAAIFNSDAVVIQDGDYKGNPFRTYAGPKYLGGVSDHFPVYAVF 308
>gi|319645540|ref|ZP_07999772.1| hypothetical protein HMPREF1012_00805 [Bacillus sp. BT1B_CT2]
gi|317392426|gb|EFV73221.1| hypothetical protein HMPREF1012_00805 [Bacillus sp. BT1B_CT2]
Length = 214
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 19/111 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q ++L ++ ++ +P ++ GDFN K S G + D Q +
Sbjct: 117 KQTDFL---IEKVQESDLPVIVTGDFNMKPYSRGWKKVAEKLADLWDE----SQYGQGFT 169
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ R + + SF + + + S H PL
Sbjct: 170 HPSHRPRR---------RLDYIFLSPSFHVSAAEIV---AVDPNASDHLPL 208
>gi|228899090|ref|ZP_04063362.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis IBL
4222]
gi|228860531|gb|EEN04919.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis IBL
4222]
Length = 263
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 2/109 (1%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+++ + + GDFN G+ ++ + ++ E T +
Sbjct: 156 DRLMERVDSNKLAFLMGDFNNNARLKGEGYEYMMQKGLYDTYELAIEKDEGTTV--QGEI 213
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D L + S + S T R+ +S H + ++ D
Sbjct: 214 AGWDENKHSLRIDLILCNQSKKVHSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|300776178|ref|ZP_07086037.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
gi|300505311|gb|EFK36450.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
Length = 311
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 39/137 (28%), Gaps = 22/137 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ--E 58
+L++ + + K D ++ GDFN + + L+ F Q
Sbjct: 174 ILNEIRQRIMKIVD---ADKEHVILCGDFNENPDDENLVQILYDNEHEKVLVNPFQQLFS 230
Query: 59 KESTCNVIKRNK----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ ++ S LD + + + + + R
Sbjct: 231 TRNYSTFHYKSGLLYDQIIMSRSLLDNKTLAFQDAHIFNSEKIRSRTRNFEGRPFRTYAG 290
Query: 109 -------STHCPLTIEY 118
S H P+ +++
Sbjct: 291 TRYLGGYSDHFPVFVKF 307
>gi|284992104|ref|YP_003410658.1| endonuclease/exonuclease/phosphatase [Geodermatophilus obscurus DSM
43160]
gi|284065349|gb|ADB76287.1| Endonuclease/exonuclease/phosphatase [Geodermatophilus obscurus DSM
43160]
Length = 322
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 11/123 (8%), Positives = 26/123 (21%), Gaps = 22/123 (17%)
Query: 19 TGIPFVIAGDFNRKINSIGDT----------------DDFWQKMDPDGLLIRFPQEKEST 62
++ GD N + L +
Sbjct: 199 QDRRLLVLGDLNDVPEAATTQILQGPPGSEIGTGGFAQPDRGDGQRLWNLAARIPADQRF 258
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV------SYDQSDLDTRRSKLSTHCPLTI 116
+ +D+ ++ + + D S + + S H P+
Sbjct: 259 SRRYRGRGELIDHILVSHALVHSVADGDVRTDGAGPTPSIEDDPSRREDAPGSDHRPVVA 318
Query: 117 EYD 119
+ D
Sbjct: 319 QID 321
>gi|72393161|ref|XP_847381.1| apurinic/apyrimidinic endonuclease [Trypanosoma brucei TREU927]
gi|62175708|gb|AAX69838.1| apurinic/apyrimidinic endonuclease, putative [Trypanosoma brucei]
gi|70803411|gb|AAZ13315.1| apurinic/apyrimidinic endonuclease, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 396
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 9/119 (7%), Positives = 25/119 (21%), Gaps = 25/119 (21%)
Query: 23 FVIAGDFNRK----------------------INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ AGD N + + ++ +
Sbjct: 280 VIWAGDLNVAERDYDRYFAGTFAAMQKCSGFTPEERTSFRETLRAVNAVDTFRELYP-RA 338
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + F++ + + S HCP+ +
Sbjct: 339 APVYTFWSARINGRARGLGWRLDYFVVSAALAG--RVVDCFTMPMIMGSDHCPVQMWLR 395
>gi|58036733|emb|CAF21852.1| AP endonuclease 1 homologue [Trypanosoma brucei brucei]
gi|261330625|emb|CBH13610.1| apurinic/apyrimidinic endonuclease, putative [Trypanosoma brucei
gambiense DAL972]
Length = 396
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 9/119 (7%), Positives = 25/119 (21%), Gaps = 25/119 (21%)
Query: 23 FVIAGDFNRK----------------------INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ AGD N + + ++ +
Sbjct: 280 VIWAGDLNVAERDYDRYFAGTFAAMQKCSGFTPEERTSFRETLRAVNAVDTFRELYP-RA 338
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + F++ + + S HCP+ +
Sbjct: 339 APVYTFWSARINGRARGLGWRLDYFVVSAALAG--RVVDCFTMPMIMGSDHCPVQMWLR 395
>gi|84874690|ref|NP_001033723.1| deoxyribonuclease-1-like 1 precursor [Bos taurus]
gi|91206581|sp|Q2QDE9|DNSL1_BOVIN RecName: Full=Deoxyribonuclease-1-like 1; AltName: Full=DNase X;
AltName: Full=Deoxyribonuclease I-like 1; Short=DNase
I-like 1; Flags: Precursor
gi|73921492|gb|AAZ94276.1| DNase X [Bos taurus]
Length = 316
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 10/99 (10%), Positives = 26/99 (26%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
++ GDFN S+ + + T + + +
Sbjct: 187 VILLGDFNADCTSLTKKRLDDLVLRTQAGFHWAIADGVDTTVRASTHCTYDRIVLHGELL 246
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ L + + +S H P+ ++
Sbjct: 247 QSLLRGAAAFDFPQSFGLTEQEALNISDHYPVEVDLALS 285
>gi|332885681|gb|EGK05927.1| hypothetical protein HMPREF9456_02191 [Dysgonomonas mossii DSM
22836]
Length = 351
Score = 40.6 bits (93), Expect = 0.066, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 30/121 (24%), Gaps = 21/121 (17%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + Q + +++ + + P + GD N S D +E
Sbjct: 251 IRASQADLIRE---EIRLSTTPVIFCGDMNDTPTSYTYKTIKKDLQD-------GFEECG 300
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ L S + Y+ S H P+ ++
Sbjct: 301 NGIGHTY------KGLFSVLRIDYILYSKEISGIKYESPKKVY-----SDHNPVIMDLVL 349
Query: 121 E 121
Sbjct: 350 N 350
>gi|257457683|ref|ZP_05622850.1| endonuclease/exonuclease/phosphatase family protein [Treponema
vincentii ATCC 35580]
gi|257445069|gb|EEV20145.1| endonuclease/exonuclease/phosphatase family protein [Treponema
vincentii ATCC 35580]
Length = 350
Score = 40.6 bits (93), Expect = 0.067, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 38/141 (26%), Gaps = 26/141 (18%)
Query: 5 QGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE-KES 61
Q L + + + PFV+ GDFN+ + DD D + +
Sbjct: 207 QEAQLMQKIREHREKNPQIPFVVCGDFNQTLEEFNQLDDLAVCWDGADYRTESEEGIQPD 266
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNS----------FSIVSYDQSDLDT--RRSKL- 108
K + +D+ + ++ +S+ K
Sbjct: 267 GSYYFKGSWEKIDHIFYESGADGSGDSDAFYTGDAGAAYIEPLSFFVLYEPPLIEDGKPV 326
Query: 109 ----------STHCPLTIEYD 119
S H PL ++
Sbjct: 327 RYNVVSGKGYSDHLPLGFRFE 347
>gi|242065948|ref|XP_002454263.1| hypothetical protein SORBIDRAFT_04g027720 [Sorghum bicolor]
gi|241934094|gb|EES07239.1| hypothetical protein SORBIDRAFT_04g027720 [Sorghum bicolor]
Length = 945
Score = 40.6 bits (93), Expect = 0.067, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 26/140 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKIN----------SIGDTDDFW-----QKMDPDGLLIRF 55
+ +KI + GD N +++ + D G + +
Sbjct: 776 QRVPEKIIDHDRIIWLGDLNYRVSLSYEETKALLEENEWDILLEKDQLAMERQAGRVFKG 835
Query: 56 PQEKESTCNVIKRNKSSLDYFVI-------DRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+E + + K + D +V R + + +Q +L
Sbjct: 836 WKEGKIYFAPTYKYKQNSDSYVWETAKSKKKRRTPAWCDRILWHGQGIEQLQYIRGEFRL 895
Query: 109 STHCPL----TIEYDFEKGN 124
S H P+ +E D + G+
Sbjct: 896 SDHRPVCSVFVVEADVDSGS 915
>gi|126730184|ref|ZP_01745996.1| Endonuclease/exonuclease/phosphatase [Sagittula stellata E-37]
gi|126709564|gb|EBA08618.1| Endonuclease/exonuclease/phosphatase [Sagittula stellata E-37]
Length = 239
Score = 40.6 bits (93), Expect = 0.067, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 34/124 (27%), Gaps = 25/124 (20%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
M +Q L+K + P ++AGDFN F + F +
Sbjct: 140 MRRKQMLTLQKRLE---DCDHPVLLAGDFNEW---NSGRLPFAAPATVVSPGLSFHASRP 193
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ F++ VS + S H P+ ++ F
Sbjct: 194 TAS------------------LDRFVLGPGLRSVSAHVH-HSALAKRASDHLPVVVDIAF 234
Query: 121 EKGN 124
N
Sbjct: 235 TTRN 238
>gi|47216859|emb|CAG11666.1| unnamed protein product [Tetraodon nigroviridis]
Length = 433
Score = 40.6 bits (93), Expect = 0.068, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 13/117 (11%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINS--IGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L + + ++ V+ GDF S + + + P
Sbjct: 323 ALSRSLQEALRGEEELVVLGDFGGPRGSELDVLRKEKFCPLLPPTRFTDISTRSPQGSRC 382
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEY 118
LD + R + + + D + S HCP+ E
Sbjct: 383 -------LDNIWLSRSLRKLFSGHCLVVREGLTHPWIPDNWSWGGVASDHCPVVAEI 432
>gi|308190072|ref|YP_003923003.1| hypothetical protein MFE_05240 [Mycoplasma fermentans JER]
gi|307624814|gb|ADN69119.1| conserved hypothetical protein [Mycoplasma fermentans JER]
Length = 647
Score = 40.6 bits (93), Expect = 0.068, Method: Composition-based stats.
Identities = 16/144 (11%), Positives = 35/144 (24%), Gaps = 27/144 (18%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKIN--SIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
L W DQ+ + GD N K+ S + + L + +
Sbjct: 503 LMDWFDQQDGDNDDLIFMGDTNIKLGNQSTAFNEILKDQYYKALLTDSEQHKSSLSNQTW 562
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR--------------------- 105
+ D + K + + + L +
Sbjct: 563 GKYSEPYDKIFTRTNLKYENANFFPLYDIFKDNILKDYQTIEEWKTYVDTIRKKTYNADF 622
Query: 106 ----SKLSTHCPLTIEYDFEKGNV 125
+S H P+ + + ++
Sbjct: 623 KYIFHAISDHSPIYFDLILDPNDI 646
>gi|296123857|ref|YP_003631635.1| endonuclease/exonuclease/phosphatase [Planctomyces limnophilus DSM
3776]
gi|296016197|gb|ADG69436.1| Endonuclease/exonuclease/phosphatase [Planctomyces limnophilus DSM
3776]
Length = 283
Score = 40.6 bits (93), Expect = 0.068, Method: Composition-based stats.
Identities = 18/138 (13%), Positives = 31/138 (22%), Gaps = 33/138 (23%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGD------------------------------TDDFW 43
+K ++ GDFN S + W
Sbjct: 130 QEKFAGHSRTMVIGDFNLNPFSRQVIGANGLHATMSRQLVKKGSRTVDGNERKMFYNPMW 189
Query: 44 QKMDPDG---LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ + DG F + S L + + I + S
Sbjct: 190 RFLGDDGEHPPGTHFYRSSTSNAYFWHVFDQVLLRNELTDRLVDLKIITKLNSFSLLNDS 249
Query: 101 LDTRRSKLSTHCPLTIEY 118
R S H P+ ++
Sbjct: 250 GQPDRENFSDHFPVVLKL 267
>gi|119963710|ref|YP_948109.1| endonuclease/exonuclease/phosphatase family protein [Arthrobacter
aurescens TC1]
gi|119950569|gb|ABM09480.1| putative Endonuclease/Exonuclease/phosphatase family protein
[Arthrobacter aurescens TC1]
Length = 363
Score = 40.6 bits (93), Expect = 0.068, Method: Composition-based stats.
Identities = 12/118 (10%), Positives = 26/118 (22%), Gaps = 15/118 (12%)
Query: 7 EWLKKW------ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
E + +W ++ + ++ GD+N + L+
Sbjct: 250 ERIDQWRSDLVKIARQASSPGNHLLMGDYNSTYDHSEFRALLADGPQGTKLVDVGTASGA 309
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
L V + + S Y + S H +
Sbjct: 310 RFSPTWPMEGPPLPGIV----IDHMVTSPRISSSGYAVHRVP-----GSDHAAIMATL 358
>gi|75759165|ref|ZP_00739268.1| Endonuclease/Exonuclease/phosphatase family protein [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|74493327|gb|EAO56440.1| Endonuclease/Exonuclease/phosphatase family protein [Bacillus
thuringiensis serovar israelensis ATCC 35646]
Length = 267
Score = 40.6 bits (93), Expect = 0.069, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 2/109 (1%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+++ + + GDFN G+ ++ + ++ E T +
Sbjct: 160 DRLMERVDSNKLAFLMGDFNNNARLKGEGYEYMMQKGLYDTYELAIEKDEGTTV--QGEI 217
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D L + S + S T R+ +S H + ++ D
Sbjct: 218 AGWDENKHSLRIDLILCNQSKKVHSSKVIFNGTNRNVISDHFGVEVQLD 266
>gi|229495328|ref|ZP_04389063.1| AP endonuclease domain protein [Porphyromonas endodontalis ATCC
35406]
gi|229317771|gb|EEN83669.1| AP endonuclease domain protein [Porphyromonas endodontalis ATCC
35406]
Length = 402
Score = 40.6 bits (93), Expect = 0.069, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 31/120 (25%), Gaps = 17/120 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L + + + + + ++ GDFN S +D
Sbjct: 300 LKRAKQADRVHVEIIHEKTPYILVCGDFNDTPISYAHQRIASGLIDAYAST----GCGTG 355
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
KR +D+ + R + T +S H PL+ E
Sbjct: 356 YSFTFKRLGFRIDHILHSRR---------VKSYNCKVDKSAT----ISDHKPLSCFISLE 402
>gi|242208449|ref|XP_002470075.1| predicted protein [Postia placenta Mad-698-R]
gi|220730827|gb|EED84678.1| predicted protein [Postia placenta Mad-698-R]
Length = 1134
Score = 40.6 bits (93), Expect = 0.069, Method: Composition-based stats.
Identities = 22/145 (15%), Positives = 45/145 (31%), Gaps = 31/145 (21%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIG-----------------DTDDFW 43
+L Q+ + ++ G+ V+ GDFN + ++F
Sbjct: 990 LLMQECQAMR-------ARGLRLVLIGDFNISLTKKDCVPRLRTEYPHSLARKEFNEEFI 1042
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+D + +K + +K D +D + + Y + ++
Sbjct: 1043 PTLDVVDVYREVHGQKAAFSWFVKGKPQGADAARVDYALVQRTLMDRVIETMYHEDSVER 1102
Query: 104 RRSKLSTHCPLTIEYD----FEKGN 124
S H PLT+ E+ N
Sbjct: 1103 AH---SDHAPLTLALRDMDGLEEEN 1124
>gi|20092035|ref|NP_618110.1| hypothetical protein MA3219 [Methanosarcina acetivorans C2A]
gi|19917247|gb|AAM06590.1| predicted protein [Methanosarcina acetivorans C2A]
Length = 330
Score = 40.6 bits (93), Expect = 0.069, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 14/131 (10%)
Query: 5 QGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDG---------LLI 53
Q + D V+ GDFN + + + + +
Sbjct: 199 QALEARMLIDDLFNKTENPWIVVCGDFNSEFDDVPVEAIRGRVENTGNGELARRIMFPCE 258
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI---VSYDQSDLDTRRSKLST 110
E + + LD+ ++ RD + + + + S
Sbjct: 259 MSIPESTRFSLYHQGKGNMLDHLLVCRDMLAYYKGSEVHNELLHDESIAFATDIKFPESD 318
Query: 111 HCPLTIEYDFE 121
H P+ E++
Sbjct: 319 HSPVIAEFEMP 329
>gi|254581358|ref|XP_002496664.1| ZYRO0D05302p [Zygosaccharomyces rouxii]
gi|238939556|emb|CAR27731.1| ZYRO0D05302p [Zygosaccharomyces rouxii]
Length = 857
Score = 40.6 bits (93), Expect = 0.070, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 37/153 (24%), Gaps = 35/153 (22%)
Query: 5 QGEWLKKWADQKIKTG-----------IPFVIAGDFNRKINSIGDTDDFWQKMD---PDG 50
Q L ++ IK P +I GDFN + +S +
Sbjct: 698 QVGILMDHLEELIKEHGSPSSRQDPKKSPVIICGDFNSQKDSAVYELLSTGHVQSHKDID 757
Query: 51 LLIRFPQEKEST------------------CNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
+++ N S++DY
Sbjct: 758 GRDFGYMSQKNFAHNLSLKSGYGYIGELPLTNFTPSFTSTIDYIWFSTQALRIRGLLGEI 817
Query: 93 IVSYDQSDL--DTRRSKLSTHCPLTIEYDFEKG 123
Y S S H P+ ++F KG
Sbjct: 818 DDDY-ISKFIGFPNDKFPSDHIPILARFEFTKG 849
>gi|301095832|ref|XP_002897015.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108444|gb|EEY66496.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 490
Score = 40.6 bits (93), Expect = 0.071, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 33/137 (24%), Gaps = 23/137 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINS--------------IGDTDDFWQKMDPD- 49
+ L + V+ GDFN + + K+ +
Sbjct: 334 EISRLANELSASVPINRKVVVLGDFNLSPQDVLGSLGSHKMALIRSPLSTTVFGKLYDNI 393
Query: 50 --GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--- 104
+ + +D+ ++ + L T
Sbjct: 394 WLDRADFSNCNIDKPTYCVDSGVLRVDWRFYPPSKGTCSRRSAQHPMDTMLPRLQTYMSR 453
Query: 105 ---RSKLSTHCPLTIEY 118
+LS HCP+ + +
Sbjct: 454 VQCGYELSDHCPVWVAF 470
>gi|242059045|ref|XP_002458668.1| hypothetical protein SORBIDRAFT_03g037815 [Sorghum bicolor]
gi|241930643|gb|EES03788.1| hypothetical protein SORBIDRAFT_03g037815 [Sorghum bicolor]
Length = 524
Score = 40.6 bits (93), Expect = 0.071, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 36/140 (25%), Gaps = 22/140 (15%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFN--RKINSIG--------DTDDFW-----QK 45
M S+ + +KI + GD N ++ D D + +
Sbjct: 351 MFSRICRRAGRKIPEKILDHDKVIWLGDLNYRIALSYADTKKLLMENDWDALFEKDQLKI 410
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDY-------FVIDRDNKNFLIDNSFSIVSYDQ 98
G + + E + + + D R + + Q
Sbjct: 411 ERDAGRVFKGWNEGKIYFAPTYKYSFNSDSYAGETATSKKKRRTPAWCDRILWRGDGIVQ 470
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
S+ S H P+ +
Sbjct: 471 LSYYRGESRFSDHRPVCGTF 490
>gi|296804272|ref|XP_002842988.1| ap endonuclease [Arthroderma otae CBS 113480]
gi|238845590|gb|EEQ35252.1| ap endonuclease [Arthroderma otae CBS 113480]
Length = 574
Score = 40.6 bits (93), Expect = 0.071, Method: Composition-based stats.
Identities = 17/149 (11%), Positives = 26/149 (17%), Gaps = 43/149 (28%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIG-------------------------DTDDFW 43
L IK G V+ GD N I +
Sbjct: 148 LDARVRNLIKMGKRVVLTGDLNISPAPIDSAPATERIRKSAETEEEYISSPARCLFNTLV 207
Query: 44 QKMDPDGLLI--------------RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
+++ G P +R + L +
Sbjct: 208 RRVGSTGDADNVETPPVLRDLCREFHPHRTGMYTCWEQRVNA--RPGNYGSRIDYILCSD 265
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S HCP+
Sbjct: 266 DIRHW--FVESNIQEGLMGSDHCPVYASI 292
>gi|197301959|ref|ZP_03167022.1| hypothetical protein RUMLAC_00689 [Ruminococcus lactaris ATCC
29176]
gi|197298907|gb|EDY33444.1| hypothetical protein RUMLAC_00689 [Ruminococcus lactaris ATCC
29176]
Length = 391
Score = 40.6 bits (93), Expect = 0.071, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 19/132 (14%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL--LIRFPQEKEST 62
Q L + ++ + G + GDFN + + D +D + E S
Sbjct: 260 QIRMLSQDMQKEYEAGNYVLCGGDFNHDLKASNDDNDDAADYESWAYPFPREELPEHLSF 319
Query: 63 C-----------NVIKRNKSSLDYFV---IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
C + ++Y F+I ++ + Y+ +
Sbjct: 320 CIDQLSDTERNALWNSARNADMEYIPGETYTVTLDGFIISDNIECLQYENVNT---GYSY 376
Query: 109 STHCPLTIEYDF 120
S H P+ +++
Sbjct: 377 SDHDPVYMKFKL 388
>gi|302566051|pdb|3I5V|A Chain A, Crystal Structure Of Beta Toxin 275-280 From
Staphylococcus Aureus
gi|302566052|pdb|3I5V|B Chain B, Crystal Structure Of Beta Toxin 275-280 From
Staphylococcus Aureus
gi|302566053|pdb|3I5V|C Chain C, Crystal Structure Of Beta Toxin 275-280 From
Staphylococcus Aureus
gi|302566054|pdb|3I5V|D Chain D, Crystal Structure Of Beta Toxin 275-280 From
Staphylococcus Aureus
Length = 313
Score = 40.6 bits (93), Expect = 0.072, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 30/127 (23%), Gaps = 13/127 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 186 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 245
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN--------SFSIVSYDQSDLDTRRSKLS 109
+ +S + + + +D S
Sbjct: 246 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVDGYVYNDF--S 303
Query: 110 THCPLTI 116
H P+
Sbjct: 304 DHYPIKA 310
>gi|281177926|dbj|BAI54256.1| endonuclease/exonuclease/phosphatase [Escherichia coli SE15]
Length = 253
Score = 40.6 bits (93), Expect = 0.072, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGESVLVAGDFNDWRQKANHPLKVLAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|104773315|ref|YP_618295.1| exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116513293|ref|YP_812199.1| exonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|103422396|emb|CAI96933.1| Exodeoxyribonuclease III [Lactobacillus delbrueckii subsp.
bulgaricus ATCC 11842]
gi|116092608|gb|ABJ57761.1| Exonuclease III [Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|325124912|gb|ADY84242.1| Exodeoxyribonuclease A [Lactobacillus delbrueckii subsp. bulgaricus
2038]
Length = 275
Score = 40.6 bits (93), Expect = 0.072, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIR 54
+ + ++ + P + +GDFN I + ++ G
Sbjct: 150 RAYLEE-LDKKKPVLASGDFNAAYQEIDLKHPENNHHSAGFTDEERAGFGQLLAAGFTDT 208
Query: 55 FPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F Q +R +++ +L+ N + ++S++ +
Sbjct: 209 FRQIHGQVEGVYSWWAQRVRTAKAN-NSGWRIDYWLVSNRLA-DQVEKSEMIETGERA-D 265
Query: 111 HCPLTIEYDF 120
HCP+ +E
Sbjct: 266 HCPILLEVKL 275
>gi|288926600|ref|ZP_06420516.1| endonuclease/Exonuclease/phosphatase [Prevotella buccae D17]
gi|288336622|gb|EFC74992.1| endonuclease/Exonuclease/phosphatase [Prevotella buccae D17]
Length = 312
Score = 40.6 bits (93), Expect = 0.072, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 15/120 (12%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ ++ ++AGDFN +S D + + + SLD
Sbjct: 194 RLLQPDAQIILAGDFNDYADSPAL-DSLYIHDMHNVSATARGANGARGTYRFRGEWGSLD 252
Query: 75 YFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKL-------------STHCPLTIEYDF 120
+ L+D + + + D S H PL ++
Sbjct: 253 QIICSLSVAGKLVDCRIGDLPFLLEEDEKYGGVHPRRTYLGPKYQRGFSDHLPLVARFNL 312
>gi|91775238|ref|YP_544994.1| endonuclease/exonuclease/phosphatase [Methylobacillus flagellatus
KT]
gi|91775382|ref|YP_545138.1| endonuclease/exonuclease/phosphatase [Methylobacillus flagellatus
KT]
gi|91709225|gb|ABE49153.1| Endonuclease/exonuclease/phosphatase [Methylobacillus flagellatus
KT]
gi|91709369|gb|ABE49297.1| Endonuclease/exonuclease/phosphatase [Methylobacillus flagellatus
KT]
Length = 365
Score = 40.6 bits (93), Expect = 0.072, Method: Composition-based stats.
Identities = 13/109 (11%), Positives = 26/109 (23%), Gaps = 16/109 (14%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
D T ++ GD N S +Q++ + +
Sbjct: 232 DAVSDTEESVIVMGDLNDVAWSRTTR--LFQRVSGLLDPRKGRHHISTYH---------S 280
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
DY + + + + S H P+ E+
Sbjct: 281 DYPFMRWALDHIFHSP-----DFGLIKMQRLPHIGSDHFPVLTHLQLER 324
>gi|189346698|ref|YP_001943227.1| Endonuclease/exonuclease/phosphatase [Chlorobium limicola DSM 245]
gi|189340845|gb|ACD90248.1| Endonuclease/exonuclease/phosphatase [Chlorobium limicola DSM 245]
Length = 347
Score = 40.6 bits (93), Expect = 0.072, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 31/134 (23%), Gaps = 26/134 (19%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++ I +I GDFN + + + R + C S
Sbjct: 212 RRTDATIDLIIMGDFNDEPENRSIKQVLGSS-GDAARVRRACSDLLYNCWSGYSGIGSYS 270
Query: 75 YFVIDRDNKNFLIDNSF-----------------------SIVSYDQSDLDTRRSKL--S 109
Y L+ + S + K S
Sbjct: 271 YRNNWERIDQILLSCGMLQKKGLSISHNAFRCFYFPNMLAQSANRPYSTYHKGKYKGGYS 330
Query: 110 THCPLTIEYDFEKG 123
H PL ++ D E
Sbjct: 331 DHLPLLLKVDIESA 344
>gi|324515144|gb|ADY46104.1| Neutral sphingomyelinase [Ascaris suum]
Length = 426
Score = 40.6 bits (93), Expect = 0.073, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 34/126 (26%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------DDFWQKMDPDGLLIRF 55
Q L ++ ++ GDFN + + +G D + + + G
Sbjct: 165 QAFELSQFVKHTSHAADLTILTGDFNLEPDDLGYRLIVDNANLIDAWLARPNKSGCETGM 224
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK---LSTHC 112
++ C + K + +V + K S H
Sbjct: 225 TCDRPDNCYTARNLKQPNPAGKRLDYIMYKCGKSDVDLVMCENRLGRIPGDKQINYSDHL 284
Query: 113 PLTIEY 118
+ ++
Sbjct: 285 GVYADF 290
>gi|206968110|ref|ZP_03229066.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus AH1134]
gi|228950924|ref|ZP_04113045.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229068121|ref|ZP_04201428.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus F65185]
gi|229176958|ref|ZP_04304353.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus 172560W]
gi|206737030|gb|EDZ54177.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus AH1134]
gi|228606433|gb|EEK63859.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus 172560W]
gi|228714935|gb|EEL66803.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus F65185]
gi|228808651|gb|EEM55149.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 263
Score = 40.6 bits (93), Expect = 0.073, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + + GDFN ++ G + + L ++ ++
Sbjct: 156 DRLMERVDSNKLAFLMGDFNNNARLEGEGYEYMMQKGLYDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S + S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKHNLRIDLILCNQSKKVHSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|153805804|ref|ZP_01958472.1| hypothetical protein BACCAC_00041 [Bacteroides caccae ATCC 43185]
gi|149130481|gb|EDM21687.1| hypothetical protein BACCAC_00041 [Bacteroides caccae ATCC 43185]
Length = 368
Score = 40.6 bits (93), Expect = 0.073, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 26/119 (21%), Gaps = 19/119 (15%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + Q + + K + + GDFN S + +
Sbjct: 267 IRASQADSVNKAITE--SKYPTIIACGDFNDGSISYTHRILTQKL-------DDAFTQSG 317
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N LI + + K S H P+
Sbjct: 318 KGLGISYNQNKFYF------RIDNILISPNLKAYNCTVDRSI----KASDHYPIWCHIS 366
>gi|327313721|ref|YP_004329158.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
denticola F0289]
gi|326945022|gb|AEA20907.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
denticola F0289]
Length = 371
Score = 40.6 bits (93), Expect = 0.073, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 28/115 (24%), Gaps = 15/115 (13%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN +S + SLD ++
Sbjct: 256 ADPRILVMGDFNDYADSPSVRLLCTRGFVNV-SARAHGNNGAKGTYRYHGAWGSLDQILV 314
Query: 79 DRDNKNFLIDNSFSIVSY---DQSDL-----------DTRRSKLSTHCPLTIEYD 119
+ ++I ++ + + S H PL ++
Sbjct: 315 SENLCPWVISCHVHDAAFLLEEDDKYGGVKPRRNYNGMRYNNGFSDHLPLVLQMR 369
>gi|319900799|ref|YP_004160527.1| Endonuclease/exonuclease/phosphatase [Bacteroides helcogenes P
36-108]
gi|319415830|gb|ADV42941.1| Endonuclease/exonuclease/phosphatase [Bacteroides helcogenes P
36-108]
Length = 366
Score = 40.6 bits (93), Expect = 0.073, Method: Composition-based stats.
Identities = 12/111 (10%), Positives = 22/111 (19%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + ++ GDFN S + +
Sbjct: 268 QADTIANEIAS--SAHPYIIVCGDFNDTPISYTHRTIAQN-------MDDAFTQSGRGLG 318
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N L + + K S H P+
Sbjct: 319 ISYNQNKFYF------RIDNILTSKNLKAYNCTVDRSI----KESDHYPIW 359
>gi|288919669|ref|ZP_06413997.1| Endonuclease/exonuclease/phosphatase [Frankia sp. EUN1f]
gi|288348958|gb|EFC83207.1| Endonuclease/exonuclease/phosphatase [Frankia sp. EUN1f]
Length = 368
Score = 40.6 bits (93), Expect = 0.073, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 33/125 (26%), Gaps = 11/125 (8%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIG-DTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + L T +P V AGDFN N T +Q + G + + ++
Sbjct: 241 QAQDL---VASAANTRLPVVFAGDFNTTANDPQNPTFPTYQFLLNSGFVDAWTKKNPGNP 297
Query: 64 NVIKRNKSSLDYFVI--DRDNKNFLIDNSFSIVSY-----DQSDLDTRRSKLSTHCPLTI 116
L V L F + QSD S H +
Sbjct: 298 GFTCCQAPDLRNPVSALIARIDLVLFRGGFDVADIHRVGDRQSDRTPSGLWPSDHAGIVA 357
Query: 117 EYDFE 121
Sbjct: 358 TLRLP 362
>gi|298488865|ref|ZP_07006890.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298156618|gb|EFH97713.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 363
Score = 40.6 bits (93), Expect = 0.074, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 36/132 (27%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFN--------RKINSIGDTDDFWQKMDPDGLLIR 54
+Q +K D+ G P++I GDFN R ++
Sbjct: 231 QKQIVATEKQLDKLESGGTPWLIGGDFNLLPLGQYQRLPEEQRLGYAADSELHELWEKYP 290
Query: 55 FPQEKESTCNVIKR-----NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + + + + DR S VS DT +S
Sbjct: 291 MIPDNAESSGIDRGKWLTHFPNDSRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--IS 348
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 349 DHLPVIGRFLLP 360
>gi|293399793|ref|ZP_06643939.1| endonuclease/exonuclease/phosphatase family protein
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291306193|gb|EFE47436.1| endonuclease/exonuclease/phosphatase family protein
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 301
Score = 40.6 bits (93), Expect = 0.074, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 18/122 (14%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ E L K D T + GDFN ++
Sbjct: 198 LRKQQMETLMKAMDS--DTCKYVIAVGDFNADQSTKEF---------DAFKEKYHIANGL 246
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N +D + N ++ + + ++ SKLS H PL +
Sbjct: 247 DGKWLDTYNG--VDDTMKVNSVDNIIVSKNIT-----IKEVKMIPSKLSDHNPLVATLEL 299
Query: 121 EK 122
+
Sbjct: 300 GE 301
>gi|238028875|ref|YP_002913106.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
glumae BGR1]
gi|237878069|gb|ACR30402.1| Endonuclease/exonuclease/phosphatase family protein [Burkholderia
glumae BGR1]
Length = 268
Score = 40.6 bits (93), Expect = 0.074, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W + + G P V+AGDFN N + ++ + +
Sbjct: 169 RQMTWIAHWIEHHAQEG-PLVLAGDFNDWRNDSV---PLFGEIGLAEVATLLGE------ 218
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + +D+ + + LS H P +
Sbjct: 219 -SGRTFPAFSPALALDKMFVRGFTPLEWRA-------PGEDTAWLSDHLPYIARLRID 268
>gi|218895489|ref|YP_002443900.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus G9842]
gi|218543762|gb|ACK96156.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus G9842]
Length = 263
Score = 40.6 bits (93), Expect = 0.074, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + + GDFN ++ G + + L ++ ++
Sbjct: 156 DRLMERVDSNKLAFLMGDFNNNARLEGEGYEYMMQKGLYDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S + S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKHNLRIDLILCNQSKKVHSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|186475729|ref|YP_001857199.1| endonuclease/exonuclease/phosphatase [Burkholderia phymatum STM815]
gi|184192188|gb|ACC70153.1| Endonuclease/exonuclease/phosphatase [Burkholderia phymatum STM815]
Length = 287
Score = 40.6 bits (93), Expect = 0.075, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 29/112 (25%), Gaps = 11/112 (9%)
Query: 13 ADQKIKTGIPF--VIAGDFNRKINSIGDTDDFWQKMDP----DGLLIRFPQEKESTCNVI 66
T P ++ GDFN S D + P + I
Sbjct: 180 IGPFADTARPVSAIVCGDFNSAYGSDAYRRMLEPLAGSPSFLDAWTVLHPGQTPPMTAGI 239
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
D + D D + S + ++ S H P+ +E
Sbjct: 240 YDKAQWSDGPLTC-DFVFVTEDLQARLQSCEID----GGTRASDHQPVIVEI 286
>gi|329850002|ref|ZP_08264848.1| hemolysin-type calcium-binding repeat 2 copies family protein
[Asticcacaulis biprosthecum C19]
gi|328841913|gb|EGF91483.1| hemolysin-type calcium-binding repeat 2 copies family protein
[Asticcacaulis biprosthecum C19]
Length = 2058
Score = 40.6 bits (93), Expect = 0.075, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 30/123 (24%), Gaps = 16/123 (13%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGD-------------TDDFWQKMDPDGLLIRFPQ 57
+ + GDFN D ++ + P
Sbjct: 1439 DYIADH-DLDARLIEGGDFNDFYFYRPLQVATGSVDADGVTRDPSETRLVNLTVSELAPG 1497
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E+ ++D+ + D + + + + +S H P
Sbjct: 1498 ER--YTYAFDGRSQAIDHILSDEELAAVADYDVVHLNTGYSGRTGATNPAISDHDPTLAR 1555
Query: 118 YDF 120
+DF
Sbjct: 1556 FDF 1558
>gi|312958184|ref|ZP_07772707.1| endonuclease/exonuclease/phosphatase [Pseudomonas fluorescens WH6]
gi|311287615|gb|EFQ66173.1| endonuclease/exonuclease/phosphatase [Pseudomonas fluorescens WH6]
Length = 292
Score = 40.6 bits (93), Expect = 0.075, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 22/111 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N + L + PQ + + + +
Sbjct: 184 AYVRELIGNYKHQVLMGDMNTHATDLLQNSPL------RDLGLLAPQVEATFPSWRPQR- 236
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ L+ + ++ S +S H P+ +E
Sbjct: 237 ----------CLDHILLSPTLTLESVQVLAHP-----ISDHLPVAVEIRLP 272
>gi|226322570|ref|ZP_03798088.1| hypothetical protein COPCOM_00342 [Coprococcus comes ATCC 27758]
gi|225209064|gb|EEG91418.1| hypothetical protein COPCOM_00342 [Coprococcus comes ATCC 27758]
Length = 366
Score = 40.6 bits (93), Expect = 0.075, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 38/134 (28%), Gaps = 18/134 (13%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ Q L +++ + G + GDFN + + + + E
Sbjct: 234 IREAQIRMLSADMEKEYEAGNYVLCGGDFNHDLKASE-KNAENCESWAYPFPREELPEHF 292
Query: 61 STCN-----------VIKRNKSSLDYFV---IDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
S C + ++Y F+ ++ Y+ +
Sbjct: 293 SFCLDNLSDSEKDALWDSARNADMEYVPGVTHTVTLDGFITSDNIEYTEYENVNT---GY 349
Query: 107 KLSTHCPLTIEYDF 120
S H P+ +++
Sbjct: 350 SYSDHDPVYMKFKL 363
>gi|157151235|ref|YP_001449822.1| RgfB [Streptococcus gordonii str. Challis substr. CH1]
gi|157076029|gb|ABV10712.1| RgfB [Streptococcus gordonii str. Challis substr. CH1]
Length = 271
Score = 40.6 bits (93), Expect = 0.075, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 33/116 (28%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K ++ +K P V+ GDFN ++ G + +
Sbjct: 159 QGEW-SKLEEELLKVKTPLVLMGDFNNPVDYEGYQHILKSPLKLQDSHKVAQKISGQATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D I S +S H L +E F
Sbjct: 218 --EGAIAGWDGNQDALKIDYIFTSQGIQIESSAVVFDGKETPVVSDHFGLEVEAKF 271
>gi|50950149|ref|NP_001002946.1| deoxyribonuclease-1 precursor [Canis lupus familiaris]
gi|62510684|sp|Q767J3|DNAS1_CANFA RecName: Full=Deoxyribonuclease-1; AltName: Full=Deoxyribonuclease
I; Short=DNase I; Flags: Precursor
gi|60729694|pir||JC8053 deoxyribonuclease I (EC 3.1.21.1), pancreatic type - dog
gi|40313536|dbj|BAD06000.1| deoxyribonuclease I [Canis lupus familiaris]
Length = 284
Score = 40.6 bits (93), Expect = 0.075, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 40/118 (33%), Gaps = 5/118 (4%)
Query: 5 QGEWLKK-WAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D Q V+ GDFN + + + ++ + + T
Sbjct: 165 EIDALYDVYLDVQHKWDLEDIVLMGDFNAGCSYVAASQWSSIRLRTNPAFQWLIPDTADT 224
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEY 118
+ + + V ++ ++ S + ++ + + +S H P+ +
Sbjct: 225 TS-TSTHCAYDRIVVAGSQLQHAVVPESAAPFNFQVAYGLSSQLAQAISDHYPVEVTL 281
>gi|321259397|ref|XP_003194419.1| hypothetical protein CGB_E5550W [Cryptococcus gattii WM276]
gi|317460890|gb|ADV22632.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 1297
Score = 40.6 bits (93), Expect = 0.076, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 38/120 (31%), Gaps = 4/120 (3%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L + +L + +I VI+ N ++ + + D ++M + +
Sbjct: 1134 ILDHEMVFLNGDLNYRIDQRRENVISSIANGELAYLLEHDQLRKEMRTNHAFRLRNFAEA 1193
Query: 61 STCN--VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPLTI 116
K + + DY ++ D S + +S H P++
Sbjct: 1194 PITFAPTYKYDPGTHDYDSSEKRRIPAWCDRILYKKSPRVHALNYQRYEPTVSDHRPVSA 1253
>gi|226499618|ref|NP_001141951.1| hypothetical protein LOC100274100 [Zea mays]
gi|194706562|gb|ACF87365.1| unknown [Zea mays]
Length = 579
Score = 40.6 bits (93), Expect = 0.076, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 42/140 (30%), Gaps = 26/140 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKIN----------SIGDTDDFW-----QKMDPDGLLIRF 55
+ +KI + GD N +++ + D G + +
Sbjct: 410 QRVPEKIIDHDRIIWLGDLNYRVSLSYEETKTLLEDNEWDILLEKDQLAMERQAGRVFKG 469
Query: 56 PQEKESTCNVIKRNKSSLDYFVI-------DRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+E + + K + D ++ R + + +Q +L
Sbjct: 470 WKEGKIYFAPTYKYKQNSDSYLWETAKSKKKRRTPAWCDRILWHGQGIEQLQYIRGEFRL 529
Query: 109 STHCPL----TIEYDFEKGN 124
S H P+ IE D + G+
Sbjct: 530 SDHRPVCSVFVIEADVDSGS 549
>gi|254251164|ref|ZP_04944482.1| Metal-dependent hydrolase [Burkholderia dolosa AUO158]
gi|124893773|gb|EAY67653.1| Metal-dependent hydrolase [Burkholderia dolosa AUO158]
Length = 271
Score = 40.6 bits (93), Expect = 0.076, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 31/118 (26%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ + P V+AGDFN N + ++ + + +
Sbjct: 170 RQMNWIAHWI-ERNASDGPLVLAGDFNDWRNDSV---ALFAEIGLSEVATLLGESGRTFP 225
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + LS H P +
Sbjct: 226 AFSPALALDKMFVRGLTPLEWQAPSGE--------------TAWLSDHLPYIARLRLD 269
>gi|42528087|ref|NP_973185.1| endonuclease/exonuclease/phosphatase family protein [Treponema
denticola ATCC 35405]
gi|41819132|gb|AAS13104.1| endonuclease/exonuclease/phosphatase family protein [Treponema
denticola ATCC 35405]
Length = 339
Score = 40.6 bits (93), Expect = 0.076, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 14/130 (10%)
Query: 1 MLSQQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
+ QQ E K + + PF+I GDFN+ + +F + + +
Sbjct: 205 IRRQQEEQAYKRLKELKASEPQTPFIICGDFNQTLEEFSLLSEFDNCWNIEAYRAAAQEG 264
Query: 59 -KESTCNVIKRNKSSLDYFVIDRDNKNFLIDN----------SFSIVSYDQSDLDTRRSK 107
+ + K + +D+F + + + + S K
Sbjct: 265 SQPAGSYFYKESWEGIDHFFYSDNLSDGKNFDLSFFCVINLKPLTDTSGKPDKYSVYSGK 324
Query: 108 L-STHCPLTI 116
S H P+ I
Sbjct: 325 GYSDHLPIGI 334
>gi|115479001|ref|NP_001063094.1| Os09g0394600 [Oryza sativa Japonica Group]
gi|49389152|dbj|BAD26446.1| inositol 1,4,5-trisphosphate 5-phosphatase-like protein [Oryza
sativa Japonica Group]
gi|49389208|dbj|BAD26496.1| inositol 1,4,5-trisphosphate 5-phosphatase-like protein [Oryza
sativa Japonica Group]
gi|113631327|dbj|BAF25008.1| Os09g0394600 [Oryza sativa Japonica Group]
Length = 401
Score = 40.6 bits (93), Expect = 0.076, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 31/129 (24%), Gaps = 23/129 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIG----------------DTDDFWQKMDPDGLLI--- 53
+KI V+ GD N +I+ + D +
Sbjct: 249 LPKKILDHDQVVLLGDLNYRISLEEAETRLLVEDKNWSILLENDQLLIEFSTGRHFDGWQ 308
Query: 54 ----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F + N + + + + Q DT +LS
Sbjct: 309 EGLITFSPTYKYHPNSDQYYWCFDGALGKKKRAPAWCDRILWRGKGLKQIQYDTCNYRLS 368
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 369 DHRPVRAVF 377
>gi|88797191|ref|ZP_01112781.1| catabolite repression control protein [Reinekea sp. MED297]
gi|88780060|gb|EAR11245.1| catabolite repression control protein [Reinekea sp. MED297]
Length = 253
Score = 40.6 bits (93), Expect = 0.076, Method: Composition-based stats.
Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 16/129 (12%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---GLLIRFPQEKESTC 63
E L++ + + F+ AG + S+ + + DP Q
Sbjct: 126 EALQQHLKRTRRKRRDFIFAGSYQIAHRSVDLGNWERHQRDPGFLPEERAWMDQAVGPIG 185
Query: 64 NVI-----------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
V + LI + + + R ++S HC
Sbjct: 186 FVDAFRLTNKQDRQHTFWPFDEAQANGSRLDYQLITPNLA--DFVVEATILREPRMSPHC 243
Query: 113 PLTIEYDFE 121
P+ +EYD +
Sbjct: 244 PVLVEYDMD 252
>gi|46395493|ref|NP_996840.1| deoxyribonuclease-1 precursor [Gallus gallus]
gi|14194703|sp|Q9YGI5|DNAS1_CHICK RecName: Full=Deoxyribonuclease-1; AltName: Full=Deoxyribonuclease
I; Short=DNase I; Flags: Precursor
gi|4107168|emb|CAA10503.1| deoxyribonuclease I [Gallus gallus]
Length = 282
Score = 40.6 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 9/102 (8%), Positives = 29/102 (28%), Gaps = 3/102 (2%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
GDFN + + ++ + + V + +
Sbjct: 179 ETNNIFFMGDFNADCSYVTAEQWPSIRLRSLSSCEWLIPDS-ADTTVTSTDCAYDRIVAC 237
Query: 79 DRDNKNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPLTIEY 118
+ + S ++ ++ ++ + +S H P+ +
Sbjct: 238 GSALRQAVEYGSATVNNFQETLRIQNKDALAISDHFPVEVTL 279
>gi|134300632|ref|YP_001114128.1| endonuclease/exonuclease/phosphatase [Desulfotomaculum reducens
MI-1]
gi|134053332|gb|ABO51303.1| Endonuclease/exonuclease/phosphatase [Desulfotomaculum reducens
MI-1]
Length = 244
Score = 40.6 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 30/115 (26%), Gaps = 20/115 (17%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+K+ + K P ++ GDFN S + L +
Sbjct: 134 AAQVKEILNIIKKCCYPCILVGDFNDGPTSKEHR------LLTTILKDAVGIQGSIKTFP 187
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + I+S T + S H P+ I
Sbjct: 188 SHKPQ---------EQIDYIFVSPEWKILSAS-----TYTTLASDHLPVQITLVL 228
>gi|332968196|gb|EGK07274.1| endonuclease/exonuclease/phosphatase [Psychrobacter sp. 1501(2011)]
Length = 251
Score = 40.6 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 28/116 (24%), Gaps = 14/116 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + + I P ++AGDFN + K
Sbjct: 148 EKQYRAIAAYVNDTIDQNRPLILAGDFNDW---KKVSCQKLADELNMTEAFMEMHHKLLP 204
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + I S LS H P++ E
Sbjct: 205 TYP---------AKLPVLSLDRIYVR-NLKIKRAWVHKGKP-WSSLSDHLPISAEL 249
>gi|297158894|gb|ADI08606.1| integral membrane protein [Streptomyces bingchenggensis BCW-1]
Length = 355
Score = 40.6 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 16/113 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
L+ +A + P +IAGDFN + M + +
Sbjct: 258 RLRAYAADR--GDEPTLIAGDFNATQDHAAFRSLLDTGMRDSARAVGMSRTPSWPTLTTP 315
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +D+ + + ++ + DL + H L ++ +
Sbjct: 316 ALGAQIDHVL---------VSDALRPRAARFLDLP-----HTDHRALLVDLEL 354
>gi|294630427|ref|ZP_06708987.1| integral membrane protein [Streptomyces sp. e14]
gi|292833760|gb|EFF92109.1| integral membrane protein [Streptomyces sp. e14]
Length = 331
Score = 40.6 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 16/117 (13%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
++ L+ +A P V+AGDFN + G + L +
Sbjct: 226 RELGRLRTFAAA--DPATPTVLAGDFNASQDHAGFRRILDTGLYDAARLAGADRTPIWPA 283
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +D+ + + S H L +E
Sbjct: 284 RTAPTLGAQIDHV--------------LVTRHFTADHARFLKVPGSDHRALLVELTL 326
>gi|229188637|ref|ZP_04315676.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus ATCC 10876]
gi|228594826|gb|EEK52606.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus ATCC 10876]
Length = 263
Score = 40.6 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + + GDFN ++ G + + L ++ ++
Sbjct: 156 DRLMERVDSNKLAFLMGDFNNNARLEGEGYEYMMQKGLYDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S + S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKHNLRIDLILCNQSKKVHSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|152985117|ref|YP_001351598.1| hypothetical protein PSPA7_6287 [Pseudomonas aeruginosa PA7]
gi|150960275|gb|ABR82300.1| hypothetical protein PSPA7_6287 [Pseudomonas aeruginosa PA7]
Length = 274
Score = 40.6 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 22/111 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N + + + R +
Sbjct: 168 AYIRELIGDYRHQVLMGDMNTHAVDLLENSPLRDLG--------LMAPQVEATFPSWRPQ 219
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+LD+ ++ D +D +S H P+++E
Sbjct: 220 RNLDHILLSSDLAL--------------ERVDVLDQPISDHLPVSVEIRLP 256
>gi|108864082|gb|ABA91837.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1301
Score = 40.6 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 26/108 (24%), Gaps = 7/108 (6%)
Query: 16 KIKTGIPFVIAGDFNRKINS--IGDTDDFWQKMDPDGLLIRFPQE----KESTCNVIKRN 69
G ++ GDFN + S Q + RN
Sbjct: 549 NATKGELWLCVGDFNEVLFSWEKERGHAKAQSCMDRFRQTLDCCSLSNLGFTGDPFTWRN 608
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ I + +S + + + S H P+ +
Sbjct: 609 NWCVRDGYIRERLD-RAVADSDWCCRFPSFRVRKGDPRHSDHHPVIVT 655
>gi|49083150|gb|AAT50960.1| PA5488 [synthetic construct]
Length = 293
Score = 40.6 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 22/111 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N + + + R +
Sbjct: 186 AYIRELIGDYRHQVLMGDMNTHAVDLLENSPLRDLG--------LMAPQVEATFPSWRPQ 237
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+LD+ ++ D +D +S H P+++E
Sbjct: 238 RNLDHILLSSDLAL--------------ERVDVLDQPISDHLPVSVEIRLP 274
>gi|62733010|gb|AAX95129.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|62733115|gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1324
Score = 40.6 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 26/108 (24%), Gaps = 7/108 (6%)
Query: 16 KIKTGIPFVIAGDFNRKINS--IGDTDDFWQKMDPDGLLIRFPQE----KESTCNVIKRN 69
G ++ GDFN + S Q + RN
Sbjct: 572 NATKGELWLCVGDFNEVLFSWEKERGHAKAQSCMDRFRQTLDCCSLSNLGFTGDPFTWRN 631
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ I + +S + + + S H P+ +
Sbjct: 632 NWCVRDGYIRERLD-RAVADSDWCCRFPSFRVRKGDPRHSDHHPVIVT 678
>gi|19745558|ref|NP_606694.1| 3'-exo-deoxyribonuclease [Streptococcus pyogenes MGAS8232]
gi|19747679|gb|AAL97193.1| putative 3'-exo-deoxyribonuclease [Streptococcus pyogenes MGAS8232]
Length = 275
Score = 40.6 bits (93), Expect = 0.077, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 39/143 (27%), Gaps = 33/143 (23%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQK 45
+Q W K+AD ++ P + AGD+N I + +
Sbjct: 141 DRQI-WDHKYADYLTELDAQKPVLAAGDYNVAHKEIDLANPSSNRRSPGFTDEERQSFTN 199
Query: 46 MDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ G F +R+K+S +L N +
Sbjct: 200 LLARGFTDTFRHLHGDIPHVYTWWAQRSKTSKIN-NTGWRIDYWLASNRL------VDKV 252
Query: 102 DTRRSKLS----THCPLTIEYDF 120
S H P+ ++ D
Sbjct: 253 KRSEMISSGERQDHTPILLDIDL 275
>gi|242372571|ref|ZP_04818145.1| Sphingomyelin phosphodiesterase [Staphylococcus epidermidis
M23864:W1]
gi|242349788|gb|EES41389.1| Sphingomyelin phosphodiesterase [Staphylococcus epidermidis
M23864:W1]
Length = 329
Score = 40.6 bits (93), Expect = 0.078, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 32/130 (24%), Gaps = 14/130 (10%)
Query: 1 MLSQQGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDT---DDFWQKMDPDGLLIRFP 56
+ Q +K++ D+ I P I GD N S D+ + +
Sbjct: 196 IRQSQMNEIKQFIKDKHIPKNEPVYIGGDLNVIKGSDEYQQMPDNLNVSLPTQFEGNPYS 255
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------- 108
+ +S + S ++ K
Sbjct: 256 WDTQSNSIAKYNYPKLEPQHLDYILLDRDHAQPSSWHNYVHKTKAPEWSVKSWGKTYKYN 315
Query: 109 --STHCPLTI 116
S H PL+
Sbjct: 316 DYSDHYPLSA 325
>gi|328871802|gb|EGG20172.1| hypothetical protein DFA_07292 [Dictyostelium fasciculatum]
Length = 144
Score = 40.6 bits (93), Expect = 0.078, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 38/140 (27%), Gaps = 22/140 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST-CNV 65
+ ++ + + +P V+ GD N + + + +++ +
Sbjct: 4 QTIEAFIKENSLNNLPVVVCGDLN-TPLENCVVNQYLKNKHYMSTFNLVNPQQKHFVSHC 62
Query: 66 IK-------RNKSSLDYFVIDRDN------------KNFLIDNSFSIVSYDQSDLDTRRS 106
D + + ID+ F +
Sbjct: 63 NHLDQEVGVDFIFLKDSQYLAPPIQDSQSILGITAPHLYPIDSYFFPRDLKVDKWQSMDV 122
Query: 107 KLSTHCPLTIEYDF-EKGNV 125
LS H PLT + F K N+
Sbjct: 123 PLSDHRPLTTTFTFLNKNNI 142
>gi|220921344|ref|YP_002496645.1| endonuclease/exonuclease/phosphatase [Methylobacterium nodulans ORS
2060]
gi|219945950|gb|ACL56342.1| Endonuclease/exonuclease/phosphatase [Methylobacterium nodulans ORS
2060]
Length = 279
Score = 40.6 bits (93), Expect = 0.078, Method: Composition-based stats.
Identities = 12/99 (12%), Positives = 26/99 (26%), Gaps = 13/99 (13%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P V+ GD N +S + D +++
Sbjct: 175 PPVVLVGDLNAVPHSFAYRRLAGRLSDAQRAPGMPRRQRTYPSAC------------PLL 222
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + ++ + R S H PL ++ +
Sbjct: 223 RLDHVFVSEGVTVRRVEVVRGPLARI-ASDHLPLLVDLE 260
>gi|167835069|ref|ZP_02461952.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
thailandensis MSMB43]
Length = 270
Score = 40.6 bits (93), Expect = 0.078, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 32/118 (27%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W + TG P V+AGDFN N + ++ + + +
Sbjct: 169 RQMHWIAHWIVRNASTG-PLVLAGDFNDWRNDS---IPLFGEIGLSEVATLLGEPGRTFP 224
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + LS H P +
Sbjct: 225 AFSPALALDKMFVRGMTPLEWRAPGDE--------------TAWLSDHLPYIARLRLD 268
>gi|77456279|ref|YP_345784.1| endonuclease/exonuclease/phosphatase [Pseudomonas fluorescens
Pf0-1]
gi|77380282|gb|ABA71795.1| putative endonuclease/exonuclease/phosphatase family protein
[Pseudomonas fluorescens Pf0-1]
Length = 292
Score = 40.6 bits (93), Expect = 0.078, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 32/111 (28%), Gaps = 22/111 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N + + L + PQ + + + +
Sbjct: 184 AYIRELIGGYKHQVLMGDMNTHASDLLQHSPL------RDLGLLAPQLEATFPSWRPQR- 236
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ L+ + ++ + +S H P+ +E
Sbjct: 237 ----------CLDHILLSPTLTLEKVEVLAQP-----ISDHLPVAVEIRLP 272
>gi|332662210|ref|YP_004444998.1| endonuclease/exonuclease/phosphatase [Haliscomenobacter hydrossis
DSM 1100]
gi|332331024|gb|AEE48125.1| Endonuclease/exonuclease/phosphatase [Haliscomenobacter hydrossis
DSM 1100]
Length = 286
Score = 40.6 bits (93), Expect = 0.079, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 24/118 (20%), Gaps = 4/118 (3%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + + I P +I GDFN + T +
Sbjct: 169 RESSKLLLQKVKE-IAGTTPAIITGDFNAVPSDEPITVLVEANNPDKLIDTEGLSLSPHF 227
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLI--DNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R I ++ + S H +
Sbjct: 228 G-PYSTFNGFTVMEQEGRHIDYIFIKNPGKLKVLKHATLTNTWAGRFASDHHAVLAVL 284
>gi|308185771|ref|YP_003929902.1| UPF0294 protein yafD [Pantoea vagans C9-1]
gi|308056281|gb|ADO08453.1| UPF0294 protein yafD [Pantoea vagans C9-1]
Length = 271
Score = 40.6 bits (93), Expect = 0.079, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q + P ++AGDFN Q+++ + + +E R K+
Sbjct: 184 EQIMHHQGPVIMAGDFNA---------WSRQRINALYRFAQRMKLEEVMFTADHRRKAFG 234
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 235 RPLDFVFYRDLRVSEASVLVT------------RASDHNPLLVEFS 268
>gi|296269289|ref|YP_003651921.1| endonuclease/exonuclease/phosphatase [Thermobispora bispora DSM
43833]
gi|296092076|gb|ADG88028.1| Endonuclease/exonuclease/phosphatase [Thermobispora bispora DSM
43833]
Length = 246
Score = 40.6 bits (93), Expect = 0.079, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 27/117 (23%), Gaps = 12/117 (10%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L E + G V+AGD N + +
Sbjct: 122 LRHAAEIVPAVEGAARAFGAHAVLAGDVNEEP-DGPVWRYLAGRYTDCLAAAAGATGGTF 180
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R ++ +D DR + + + + S H P+
Sbjct: 181 PS---PRPRARIDGIFADRGLRVVSCAVAAEPIHDVV--------RASDHRPVVAVL 226
>gi|167585165|ref|ZP_02377553.1| Endonuclease/exonuclease/phosphatase [Burkholderia ubonensis Bu]
Length = 274
Score = 40.6 bits (93), Expect = 0.079, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W + K G P V+AGDFN N + ++ + + +
Sbjct: 171 RQMHWIAHWIVRHAKDG-PLVLAGDFNDWRNDS---IPLFGEIGLTEVATLLGESGRTFP 226
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + LS H P +
Sbjct: 227 AFSPALALDKMFVRGMTPLEWNAPSGE--------------TAWLSDHLPYIARLRLD 270
>gi|322387486|ref|ZP_08061096.1| RgfB protein [Streptococcus infantis ATCC 700779]
gi|321142015|gb|EFX37510.1| RgfB protein [Streptococcus infantis ATCC 700779]
Length = 272
Score = 40.6 bits (93), Expect = 0.080, Method: Composition-based stats.
Identities = 13/106 (12%), Positives = 25/106 (23%), Gaps = 2/106 (1%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ P ++AGDFN G +D + S +
Sbjct: 168 LKELNKPLLLAGDFNNPAGQEGYQAILSSPLDLQDAFEVAK--ERSGSYTVPPEIDGWKG 225
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + ++S H L E ++
Sbjct: 226 NTEPLRIDYVFMTKDLQVEKLQVVFDGQASPQVSDHFGLQAELSWK 271
>gi|152983806|ref|YP_001346537.1| hypothetical protein PSPA7_1151 [Pseudomonas aeruginosa PA7]
gi|150958964|gb|ABR80989.1| hypothetical protein PSPA7_1151 [Pseudomonas aeruginosa PA7]
Length = 361
Score = 40.6 bits (93), Expect = 0.080, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 34/133 (25%), Gaps = 15/133 (11%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKI--NSIGDTDDFWQKMDPDGLLIRFPQEK 59
L +Q E + D+ P+++ GD N + D L
Sbjct: 230 LQRQVEMTRALLDELQARRTPWLLGGDLNLLPPGQYAYLLEPLRAPYRADSELALLSGRY 289
Query: 60 ESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + DR S + + DT ++
Sbjct: 290 PMVPSLEEAGGVDQMRWYTHFPNDPRVHGPDRTLDYLFHSPSLTRLEARVRRSDT--LQI 347
Query: 109 STHCPLTIEYDFE 121
S H PL+ +
Sbjct: 348 SNHLPLSARFLLP 360
>gi|103487806|ref|YP_617367.1| endonuclease/exonuclease/phosphatase [Sphingopyxis alaskensis
RB2256]
gi|98977883|gb|ABF54034.1| Endonuclease/exonuclease/phosphatase [Sphingopyxis alaskensis
RB2256]
Length = 231
Score = 40.6 bits (93), Expect = 0.080, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 25/117 (21%), Gaps = 21/117 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + + +P ++ GD N + + G R S
Sbjct: 134 RQQARAILHHIAE--GEKLPTILMGDCN-------EWRQTGGCLADFGAEHRLVDTGHSF 184
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ V ++ S H P+ +
Sbjct: 185 HS-----------RRPVAKLDRIFASPDLDPVDAGVHR-SALAARASDHLPIWARFR 229
>gi|322696490|gb|EFY88281.1| Endonuclease/Exonuclease/phosphatase family protein [Metarhizium
acridum CQMa 102]
Length = 325
Score = 40.6 bits (93), Expect = 0.080, Method: Composition-based stats.
Identities = 12/111 (10%), Positives = 30/111 (27%), Gaps = 1/111 (0%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+W+ K +I GDFN + + + P+ ++ +
Sbjct: 212 NEWSHGKGVPPSVVLIGGDFNSEPDDEAYQMMTAPGSGMSDISGLVPERGHYGNHLTYTS 271
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS-KLSTHCPLTIEYD 119
+ D + + ++ + S H P+ +
Sbjct: 272 FGEPNEHPQRIDFLFIQEPRTAQVETFGVLANSFDDQIRFSDHRPIVSDLQ 322
>gi|228906140|ref|ZP_04070029.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis IBL
200]
gi|228853549|gb|EEM98317.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis IBL
200]
Length = 263
Score = 40.6 bits (93), Expect = 0.080, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + + GDFN ++ G + + L E + V
Sbjct: 156 DRLMERVDSNKLAFLMGDFNNNARLEGEGYEYMMQKGLYDTYELAIEKDEGTTVQGV--- 212
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S + S T R+ +S H + ++ D
Sbjct: 213 -IAGWDENKHNLRIDLILCNQSKKVHSSKVVFNGTNRNVISDHFGVEVQLD 262
>gi|328472297|gb|EGF43167.1| extracellular nuclease-like protein [Vibrio parahaemolyticus 10329]
Length = 984
Score = 40.6 bits (93), Expect = 0.081, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 15/130 (11%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L ++ +K G AG + ++ L ++
Sbjct: 723 LTDYSKEKY--GRDIYTAGYTTINGGELQVEQTQIKQGYGLNNLNTLLHGTDTFSYTYSG 780
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LSTHCPLT 115
+LD+ + ++ ++ +S+L SK S H P+
Sbjct: 781 ELGNLDHALASNSLAQKVVAIEDWHINSLESNLFEYGSKYTGDMPKYKDAFSASDHDPVI 840
Query: 116 IEYDFEKGNV 125
I D ++
Sbjct: 841 IAIDLPDTDI 850
>gi|260900883|ref|ZP_05909278.1| endonuclease/exonuclease/phosphatase family protein [Vibrio
parahaemolyticus AQ4037]
gi|308106508|gb|EFO44048.1| endonuclease/exonuclease/phosphatase family protein [Vibrio
parahaemolyticus AQ4037]
Length = 984
Score = 40.6 bits (93), Expect = 0.081, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 15/130 (11%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L ++ +K G AG + ++ L ++
Sbjct: 723 LTDYSKEKY--GRDIYTAGYTTINGGELQVEQTQIKQGYGLNNLNTLLHGTDTFSYTYSG 780
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LSTHCPLT 115
+LD+ + ++ ++ +S+L SK S H P+
Sbjct: 781 ELGNLDHALASNSLAQKVVAIEDWHINSLESNLFEYGSKYTGDMPKYKDAFSASDHDPVI 840
Query: 116 IEYDFEKGNV 125
I D ++
Sbjct: 841 IAIDLPDTDI 850
>gi|28899573|ref|NP_799178.1| extracellular nuclease-like protein [Vibrio parahaemolyticus RIMD
2210633]
gi|260361411|ref|ZP_05774473.1| endonuclease/exonuclease/phosphatase family protein [Vibrio
parahaemolyticus K5030]
gi|260876683|ref|ZP_05889038.1| nuclease [Vibrio parahaemolyticus AN-5034]
gi|28807809|dbj|BAC61062.1| extracellular nuclease-related protein [Vibrio parahaemolyticus
RIMD 2210633]
gi|308093950|gb|EFO43645.1| nuclease [Vibrio parahaemolyticus AN-5034]
gi|308112902|gb|EFO50442.1| endonuclease/exonuclease/phosphatase family protein [Vibrio
parahaemolyticus K5030]
Length = 984
Score = 40.6 bits (93), Expect = 0.081, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 15/130 (11%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L ++ +K G AG + ++ L ++
Sbjct: 723 LTDYSKEKY--GRDIYTAGYTTINGGELQVEQTQIKQGYGLNNLNTLLHGTDTFSYTYSG 780
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LSTHCPLT 115
+LD+ + ++ ++ +S+L SK S H P+
Sbjct: 781 ELGNLDHALASNSLAQKVVAIEDWHINSLESNLFEYGSKYTGDMPKYKDAFSASDHDPVI 840
Query: 116 IEYDFEKGNV 125
I D ++
Sbjct: 841 IAIDLPDTDI 850
>gi|260173107|ref|ZP_05759519.1| hypothetical protein BacD2_14655 [Bacteroides sp. D2]
gi|315921383|ref|ZP_07917623.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313695258|gb|EFS32093.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 361
Score = 40.6 bits (93), Expect = 0.082, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 30/115 (26%), Gaps = 19/115 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + Q + + + + ++ GDFN S Q++D +
Sbjct: 260 IRASQADSVARVIAE--SKYPTTIVCGDFNDGSISYT-HRILTQELDD------AFTQSG 310
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N LI + + K S H P+
Sbjct: 311 KGLGISYNLNKFYF------RIDNILISPNLKAYNCTVDRSI----KASDHYPIW 355
>gi|222628405|gb|EEE60537.1| hypothetical protein OsJ_13877 [Oryza sativa Japonica Group]
Length = 869
Score = 40.6 bits (93), Expect = 0.082, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 15/121 (12%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD--------TDDFWQKMDPDGLLIRFPQE 58
++L++ + IPF++ GDFN D + L +
Sbjct: 680 DFLREILGKSNSMQIPFMMGGDFNMIRFPDEKSNGNIHKRWADKFNSFIALAELRELHRS 739
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + ++ +S Y + + + S H PL +E
Sbjct: 740 GGKYTWTN-------KQADPVMEVLDRVLVSSSWEEMYPLTMVKSLLRVGSDHNPLLVEL 792
Query: 119 D 119
+
Sbjct: 793 E 793
>gi|189467306|ref|ZP_03016091.1| hypothetical protein BACINT_03694 [Bacteroides intestinalis DSM
17393]
gi|189435570|gb|EDV04555.1| hypothetical protein BACINT_03694 [Bacteroides intestinalis DSM
17393]
Length = 293
Score = 40.6 bits (93), Expect = 0.082, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 2/111 (1%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV--IK 67
K W + + N + F D + ++ + +
Sbjct: 180 KTWIRNIKRGDASRPAYNNLNDGKFDLSVISSFLAAGMDDPIGRLVRPAEKRMTHPSAFR 239
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
D + D ++ I S S++ + R +S H P++I
Sbjct: 240 YRWKVEDERLPDLRSRLDYILVSPSLMHRCILGVVERLEGISDHYPVSIVL 290
>gi|110677885|ref|YP_680892.1| hypothetical protein RD1_0499 [Roseobacter denitrificans OCh 114]
gi|109454001|gb|ABG30206.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 253
Score = 40.6 bits (93), Expect = 0.082, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 35/116 (30%), Gaps = 4/116 (3%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E + + P ++AGDFN + E+ +
Sbjct: 141 RQAELAET--QRHFDHEGPCLVAGDFNSYA--VPWLAPLLAIPLHYRPKDWLIFERRALN 196
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+R + + +D F+ ++ RR S H P+ ++
Sbjct: 197 AWFRRRGFAPALHGVTFPKFRLQMDQVFTRDIMVETAAIERRLWGSDHRPILLDIS 252
>gi|322826414|gb|EFZ31039.1| apurinic/apyrimidinic endonuclease, putative [Trypanosoma cruzi]
Length = 419
Score = 40.6 bits (93), Expect = 0.083, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 25/119 (21%), Gaps = 25/119 (21%)
Query: 23 FVIAGDFNRK----------------------INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
F+ AGD N + + + K
Sbjct: 303 FIWAGDLNVAERDYDRYFAGSYKAMQKCSGFTPEERASFRETLRVANAVDTFRALYP-KA 361
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + F++ + + S HCPL +
Sbjct: 362 APVYTFWSARINGRDRGLGWRLDYFVVSAALARH--VVDCFTMPHVMGSDHCPLQMWLR 418
>gi|254482734|ref|ZP_05095972.1| exodeoxyribonuclease III (xth) subfamily [marine gamma
proteobacterium HTCC2148]
gi|214037093|gb|EEB77762.1| exodeoxyribonuclease III (xth) subfamily [marine gamma
proteobacterium HTCC2148]
Length = 254
Score = 40.6 bits (93), Expect = 0.083, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 33/134 (24%), Gaps = 27/134 (20%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPD- 49
E L + FVI G++N D +
Sbjct: 128 ELLGNHLQKVRNKRREFVICGNWNVAHTPADVQDTERNSTISGFLAEERQWMNELFTEGY 187
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK- 107
+++ D + +I Y +S+
Sbjct: 188 IDPFREINSDQDEFTWW-----PEGDRATNGWRSDFQVISKDLQ---YAVDYGAIYKSRE 239
Query: 108 LSTHCPLTIEYDFE 121
STH P+ ++YD E
Sbjct: 240 FSTHAPVIMDYDIE 253
>gi|228963475|ref|ZP_04124632.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228796169|gb|EEM43620.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 263
Score = 40.6 bits (93), Expect = 0.084, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + + GDFN ++ G + + L ++ ++
Sbjct: 156 DRLMERVDSNKLAFLMGDFNNNARLEGEGYEYMMQKGLYDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D L + S + S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKHSLRIDLILCNQSKKVHSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|257125550|ref|YP_003163664.1| endonuclease/exonuclease/phosphatase [Leptotrichia buccalis
C-1013-b]
gi|257049489|gb|ACV38673.1| Endonuclease/exonuclease/phosphatase [Leptotrichia buccalis
C-1013-b]
Length = 291
Score = 40.6 bits (93), Expect = 0.084, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL-IRFPQEKESTCNVIKRNKSSLD 74
K+ +IAGDFN + + ++ + + + T + SS D
Sbjct: 186 KLTDEDDIIIAGDFNTAAD-----NMAFKNLSDKYNVSYILEPNENLTTLSDNKLVSSYD 240
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
F I+ NS ++ + +S H P+ EY +
Sbjct: 241 NFFINSKKTKEFTGNSGVYNFIKNNNYAIIKKYVSDHLPIFSEYSITED 289
>gi|189465268|ref|ZP_03014053.1| hypothetical protein BACINT_01614 [Bacteroides intestinalis DSM
17393]
gi|189437542|gb|EDV06527.1| hypothetical protein BACINT_01614 [Bacteroides intestinalis DSM
17393]
Length = 368
Score = 40.6 bits (93), Expect = 0.084, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 25/111 (22%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + ++ GDFN S Q ++ +
Sbjct: 270 QADSIAQKIAA--SQHPYIIVCGDFNDTPISYA-HRVIGQGLNDT------FTQSGRGLG 320
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N L + + K S H P+
Sbjct: 321 ISYNQNKFYF------RIDNILASKNLKSYNCTVDRSI----KESDHYPIW 361
>gi|163859167|ref|YP_001633465.1| hypothetical protein Bpet4846 [Bordetella petrii DSM 12804]
gi|163262895|emb|CAP45198.1| conserved hypothetical protein [Bordetella petrii]
Length = 286
Score = 40.6 bits (93), Expect = 0.084, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 37/151 (24%), Gaps = 35/151 (23%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINS---------------------------- 35
+Q + L + + G P ++AGDFN +
Sbjct: 138 RQIQALTDRISRLVPEGDPILVAGDFNDWGDRLAPLFVQQLGLYEVFANAPRSHGGELPR 197
Query: 36 -----IGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS 90
++ + +L R Q +
Sbjct: 198 LRDSVRRLSNVLRGVPNSVAVLERNNQLGMGGAYCPLPPPRTFPAVFPWFRLDRIYQR-G 256
Query: 91 FSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
F++ S +KLS H PL E +
Sbjct: 257 FAVRSARVLRG-REWAKLSDHAPLLAELELP 286
>gi|77557170|gb|ABA99966.1| retrotransposon protein, putative, LINE subclass [Oryza sativa
Japonica Group]
Length = 900
Score = 40.6 bits (93), Expect = 0.084, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 42/116 (36%), Gaps = 2/116 (1%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-FWQKMDPDGLLIRFPQEKES 61
++Q +L++ D K + + GDFN ++ + ++ E +
Sbjct: 756 AKQA-FLRQLRDTKPADNSKWQVLGDFNIIYKALDKNNINLNRRQMRIFKDTLNACELKE 814
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+R S + + N+ ++++ L + LS HCPL +
Sbjct: 815 IALQNRRYTWSNEQDNPTLVKLDRFFCNASWNTTFERHLLHALSTSLSDHCPLMLT 870
>gi|228919300|ref|ZP_04082670.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228840407|gb|EEM85678.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 272
Score = 40.2 bits (92), Expect = 0.085, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 2/109 (1%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+++ + + GDFN G+ ++ + ++ E T +
Sbjct: 156 DRLMERVDSNKLAFLMGDFNNNARLKGEGYEYMMQKGLYDTYELAIEKDEGTTV--QGEI 213
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D L + S + S T R+ +S H + ++ D
Sbjct: 214 AGWDENKHSLRIDLILCNQSKKVHSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|227549936|ref|ZP_03979985.1| possible exodeoxyribonuclease III [Corynebacterium lipophiloflavum
DSM 44291]
gi|227077952|gb|EEI15915.1| possible exodeoxyribonuclease III [Corynebacterium lipophiloflavum
DSM 44291]
Length = 303
Score = 40.2 bits (92), Expect = 0.085, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 19/69 (27%)
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R E R ++ + D + + T + S
Sbjct: 234 DVARRLEPESAPYTWWTFRGQAFNNDAGWRIDVQAATAAMLERAQHTWVEKVPTVEQRWS 293
Query: 110 THCPLTIEY 118
H PL +EY
Sbjct: 294 DHSPLMVEY 302
>gi|257056393|ref|YP_003134225.1| metal-dependent hydrolase [Saccharomonospora viridis DSM 43017]
gi|256586265|gb|ACU97398.1| metal-dependent hydrolase [Saccharomonospora viridis DSM 43017]
Length = 286
Score = 40.2 bits (92), Expect = 0.085, Method: Composition-based stats.
Identities = 10/118 (8%), Positives = 28/118 (23%), Gaps = 21/118 (17%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ S+Q + Q ++ GDFN + + ++++
Sbjct: 187 VRSRQVTEMLDILRQ-DPPRAHQLLLGDFNAEPAAPEL-APLFERLRDAWGTR-----GG 239
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ +++ ++ S H P+
Sbjct: 240 GLTYP---------AEDPVKRIDYITAGGGVRVLNASVPAVE-----ASDHRPVVATL 283
>gi|229095084|ref|ZP_04226080.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-29]
gi|229101186|ref|ZP_04231952.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-28]
gi|229114038|ref|ZP_04243464.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock1-3]
gi|228669497|gb|EEL24913.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock1-3]
gi|228682314|gb|EEL36425.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-28]
gi|228688414|gb|EEL42296.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-29]
Length = 263
Score = 40.2 bits (92), Expect = 0.086, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + + GDFN ++ G + + L ++ ++
Sbjct: 156 DRLMERVDSNELSFLMGDFNNNARLQGEGYEYLMQKGLYDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + + + S + S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKHNLRIDLIVCNQSKRVRSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|303287500|ref|XP_003063039.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455675|gb|EEH52978.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 323
Score = 40.2 bits (92), Expect = 0.086, Method: Composition-based stats.
Identities = 12/109 (11%), Positives = 23/109 (21%), Gaps = 10/109 (9%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDR 80
P ++AGDFN + + R+ +
Sbjct: 216 PVIVAGDFNAVPSEPAVDRVRNGVAGGLRSAYEEINGIHPAFTTWKIRSGNYKKGE-AKM 274
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTR--------RSKLSTHCPLTIEYDFE 121
+ I+S + S H L + +
Sbjct: 275 CIDYIFVPRECGILSVGALPDENDIGPKGLPCEKHPSDHLMLRADLKIQ 323
>gi|154494949|ref|ZP_02033954.1| hypothetical protein PARMER_03995 [Parabacteroides merdae ATCC
43184]
gi|154085499|gb|EDN84544.1| hypothetical protein PARMER_03995 [Parabacteroides merdae ATCC
43184]
Length = 650
Score = 40.2 bits (92), Expect = 0.086, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 26/106 (24%), Gaps = 17/106 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
PF IAGD N S + + + +I +K +
Sbjct: 198 ASANKPFFIAGDMNAHPGSE------FIRQLQNDFVILTDTKKPTFP-----------AN 240
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
D + S S H P+ + F +
Sbjct: 241 NPDETIDYIAAYAKDTTAFTRISSRVWDEPAASDHRPIITDIIFNQ 286
>gi|153005947|ref|YP_001380272.1| endonuclease/exonuclease/phosphatase [Anaeromyxobacter sp. Fw109-5]
gi|152029520|gb|ABS27288.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter sp. Fw109-5]
Length = 387
Score = 40.2 bits (92), Expect = 0.086, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 6/119 (5%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEKES 61
Q L + + +P V GDFN + S T G +
Sbjct: 262 QAGELVDLVE---ASPLPVVAVGDFNAQPGSAPYVELTSVLADAWVESGAEGPGYTCCSN 318
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ D + + ++V + +DL S H + + +
Sbjct: 319 DPLLRDTASPPFDERIDLVLFTPPFVALDATVVGDEPADLTATGMWPSDHAGVVAKLRY 377
>gi|21224501|ref|NP_630280.1| hypothetical protein SCO6176 [Streptomyces coelicolor A3(2)]
gi|4008541|emb|CAA22510.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 276
Score = 40.2 bits (92), Expect = 0.086, Method: Composition-based stats.
Identities = 11/104 (10%), Positives = 24/104 (23%), Gaps = 21/104 (20%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
G + GDFN + + W+++ G ++
Sbjct: 188 PGAHQFLLGDFNAEPAAPEL-APLWKELSDAGA----------------GTPATYPAQAP 230
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ I + S H P+ + +
Sbjct: 231 VKRIDYVTAGKDVRIRRTAVPEEPA----ASDHRPVVADVSLPR 270
>gi|254496441|ref|ZP_05109319.1| putative endonuclease/exonuclease/phosphatase family protein
[Legionella drancourtii LLAP12]
gi|254354337|gb|EET12994.1| putative endonuclease/exonuclease/phosphatase family protein
[Legionella drancourtii LLAP12]
Length = 242
Score = 40.2 bits (92), Expect = 0.087, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 37/115 (32%), Gaps = 21/115 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q ++ + D P ++ GDFN + ++ + G+ + K +
Sbjct: 149 QSHRIRHFMDTI---NTPQILCGDFNLRPDTKSMH------IIEQGMDNLITRHKIRSTR 199
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
Y ++ LI + ++S H PL ++++
Sbjct: 200 TSY-------YKKEEKFADYILISPEI-----SVNKFAVMNDEVSDHAPLYLDFN 242
>gi|118588886|ref|ZP_01546293.1| Endonuclease/exonuclease/phosphatase [Stappia aggregata IAM 12614]
gi|118438215|gb|EAV44849.1| Endonuclease/exonuclease/phosphatase [Stappia aggregata IAM 12614]
Length = 238
Score = 40.2 bits (92), Expect = 0.087, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 30/121 (24%), Gaps = 20/121 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L + + +P V+ GD N +S F ++ + FP
Sbjct: 133 KKQITSLMHQLHEHLD-YLPTVLIGDLNEWRDSADSIKLFEERYEVTTPGRSFPSPLPVG 191
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ F + T R S H P+ E
Sbjct: 192 S------------------LDRIITSPEFIVRQAGVHKSKTARI-ASDHLPVWANLTLEP 232
Query: 123 G 123
Sbjct: 233 A 233
>gi|77361319|ref|YP_340894.1| hypothetical protein PSHAa2403 [Pseudoalteromonas haloplanktis
TAC125]
gi|76876230|emb|CAI87452.1| putative membrane protein [Pseudoalteromonas haloplanktis TAC125]
Length = 358
Score = 40.2 bits (92), Expect = 0.087, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 22/112 (19%), Gaps = 16/112 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A P ++AGD N S D R
Sbjct: 228 AKALKNPTRPTIVAGDLNDVAWSRSTRLFMQISGLLDPRKGRGFYNTFHASYFF------ 281
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ + + + S H L E FE +
Sbjct: 282 -----MRWPLDHLFHSEG-----FKVKRIKRLAKYGSDHFALLTELTFENAD 323
>gi|256784304|ref|ZP_05522735.1| hypothetical protein SlivT_07438 [Streptomyces lividans TK24]
Length = 276
Score = 40.2 bits (92), Expect = 0.087, Method: Composition-based stats.
Identities = 11/104 (10%), Positives = 24/104 (23%), Gaps = 21/104 (20%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
G + GDFN + + W+++ G ++
Sbjct: 188 PGAHQFLLGDFNAEPAAPEL-APLWKELSDAGA----------------GTPATYPAQAP 230
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ I + S H P+ + +
Sbjct: 231 VKRIDYVTAGKDVRIRRTAVPEEPA----ASDHRPVVADVSLPR 270
>gi|291298430|ref|YP_003509708.1| endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
gi|290567650|gb|ADD40615.1| Endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
Length = 289
Score = 40.2 bits (92), Expect = 0.087, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 16/104 (15%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
V+ GDFN + N+ + D + + + K +DY
Sbjct: 202 ADDARRSVVVGDFNDEPNTPAIAAMTRRFTDAWAVA----GSGKGYSYSSTKPKRRIDYV 257
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
D + + +D + S H P+ E++
Sbjct: 258 FGSEDLEPRAM------------TVDDTDPRASDHLPILTEFEL 289
>gi|22213026|gb|AAH25571.1| Endonuclease/exonuclease/phosphatase family domain containing 1
[Mus musculus]
Length = 569
Score = 40.2 bits (92), Expect = 0.087, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 14/118 (11%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ +K VI GDF + +S + + N+ RN
Sbjct: 433 LQETLKGEKDVVILGDFGQGPDSNDYD------ILRREKFHHLVPAH-TFTNISTRNPQG 485
Query: 73 L---DYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
D I + K + + + D + S HCP+ E EK
Sbjct: 486 SKSVDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAELYMEKD 543
>gi|71043968|ref|NP_080465.3| endonuclease/exonuclease/phosphatase family domain-containing
protein 1 [Mus musculus]
gi|123783293|sp|Q3TGW2|EEPD1_MOUSE RecName: Full=Endonuclease/exonuclease/phosphatase family
domain-containing protein 1
gi|74214399|dbj|BAE40436.1| unnamed protein product [Mus musculus]
gi|148693355|gb|EDL25302.1| RIKEN cDNA 2310005P05 [Mus musculus]
Length = 569
Score = 40.2 bits (92), Expect = 0.087, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 14/118 (11%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ +K VI GDF + +S + + N+ RN
Sbjct: 433 LQETLKGEKDVVILGDFGQGPDSNDYD------ILRREKFHHLVPAH-TFTNISTRNPQG 485
Query: 73 L---DYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
D I + K + + + D + S HCP+ E EK
Sbjct: 486 SKSVDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAELYMEKD 543
>gi|12843816|dbj|BAB26125.1| unnamed protein product [Mus musculus]
Length = 569
Score = 40.2 bits (92), Expect = 0.087, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 14/118 (11%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ +K VI GDF + +S + + N+ RN
Sbjct: 433 LQETLKGEKDVVILGDFGQGPDSNDYD------ILRREKFHHLVPAH-TFTNISTRNPQG 485
Query: 73 L---DYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
D I + K + + + D + S HCP+ E EK
Sbjct: 486 SKSVDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAELYMEKD 543
>gi|50511063|dbj|BAD32517.1| mKIAA1706 protein [Mus musculus]
Length = 607
Score = 40.2 bits (92), Expect = 0.087, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 14/118 (11%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ +K VI GDF + +S + + N+ RN
Sbjct: 471 LQETLKGEKDVVILGDFGQGPDSNDYD------ILRREKFHHLVPAH-TFTNISTRNPQG 523
Query: 73 L---DYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
D I + K + + + D + S HCP+ E EK
Sbjct: 524 SKSVDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAELYMEKD 581
>gi|15600681|ref|NP_254175.1| hypothetical protein PA5488 [Pseudomonas aeruginosa PAO1]
gi|107104590|ref|ZP_01368508.1| hypothetical protein PaerPA_01005669 [Pseudomonas aeruginosa PACS2]
gi|116053638|ref|YP_793965.1| hypothetical protein PA14_72430 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218894591|ref|YP_002443461.1| putative hydrolase [Pseudomonas aeruginosa LESB58]
gi|254237831|ref|ZP_04931154.1| hypothetical protein PACG_03928 [Pseudomonas aeruginosa C3719]
gi|254243040|ref|ZP_04936362.1| hypothetical protein PA2G_03828 [Pseudomonas aeruginosa 2192]
gi|296392353|ref|ZP_06881828.1| putative hydrolase [Pseudomonas aeruginosa PAb1]
gi|313111571|ref|ZP_07797370.1| hypothetical protein PA39016_003370046 [Pseudomonas aeruginosa
39016]
gi|9951822|gb|AAG08873.1|AE004961_8 hypothetical protein PA5488 [Pseudomonas aeruginosa PAO1]
gi|115588859|gb|ABJ14874.1| putative hydrolase [Pseudomonas aeruginosa UCBPP-PA14]
gi|126169762|gb|EAZ55273.1| hypothetical protein PACG_03928 [Pseudomonas aeruginosa C3719]
gi|126196418|gb|EAZ60481.1| hypothetical protein PA2G_03828 [Pseudomonas aeruginosa 2192]
gi|218774820|emb|CAW30638.1| putative hydrolase [Pseudomonas aeruginosa LESB58]
gi|310883872|gb|EFQ42466.1| hypothetical protein PA39016_003370046 [Pseudomonas aeruginosa
39016]
Length = 292
Score = 40.2 bits (92), Expect = 0.087, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 22/111 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N + + + R +
Sbjct: 186 AYIRELIGDYRHQVLMGDMNTHAVDLLENSPLRDLG--------LMAPQVEATFPSWRPQ 237
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+LD+ ++ D +D +S H P+++E
Sbjct: 238 RNLDHILLSSDLAL--------------ERVDVLDQPISDHLPVSVEIRLP 274
>gi|238495781|ref|XP_002379126.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Aspergillus flavus NRRL3357]
gi|220694006|gb|EED50350.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Aspergillus flavus NRRL3357]
Length = 635
Score = 40.2 bits (92), Expect = 0.088, Method: Composition-based stats.
Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 3/103 (2%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV---IKRNKSSLDYF 76
G+ +I G + +S K + + S
Sbjct: 246 GLEILIIGSVSTATSSGNLWHRKTTKSFTTMIRAFPFYTEGLITFPPTYKYDIDSDTYDT 305
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + Q D +T + + S H P+ +
Sbjct: 306 SEKARIPAWCDRILWRGSCLRQIDYNTAKLRFSDHRPVWATFS 348
>gi|168062406|ref|XP_001783171.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665313|gb|EDQ52002.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 492
Score = 40.2 bits (92), Expect = 0.088, Method: Composition-based stats.
Identities = 17/144 (11%), Positives = 35/144 (24%), Gaps = 24/144 (16%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF------ 55
+ + L + I + GD N ++ K L+R
Sbjct: 340 FPRLAKLLGLQLPETILAHDRVIWLGDLNYRLALPDKETWTLVKQGDWATLLRVDQLKLE 399
Query: 56 ---------PQEKESTCNVIKRNKSSLDY---------FVIDRDNKNFLIDNSFSIVSYD 97
QE + + D R + + +
Sbjct: 400 QSEGRVFPDWQEGPIYFPPTYKYMNGSDNYSSGEGSTGSSSKRRSPAWCDRVLWYGQGLH 459
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFE 121
Q + KLS H ++ ++ +
Sbjct: 460 QLNYSREDCKLSDHRSVSATFNVD 483
>gi|109731864|gb|AAI15571.1| Deoxyribonuclease I [Mus musculus]
Length = 283
Score = 40.2 bits (92), Expect = 0.088, Method: Composition-based stats.
Identities = 12/117 (10%), Positives = 32/117 (27%), Gaps = 2/117 (1%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D K G + GDFN + + + ++ + + T
Sbjct: 165 EIDALYDVYLDVWQKWGLEDIMFMGDFNAGCSYVTSSQWSSIRLRTSPIFQWLIPDSADT 224
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +++ + + +S H P+ +
Sbjct: 225 TVTSTHCAYDRIVVAGALLQAAVVPNSAPFDFQAEYGLSNQLAEAISDHYPVEVTLR 281
>gi|329890223|ref|ZP_08268566.1| endonuclease/Exonuclease/phosphatase family protein [Brevundimonas
diminuta ATCC 11568]
gi|328845524|gb|EGF95088.1| endonuclease/Exonuclease/phosphatase family protein [Brevundimonas
diminuta ATCC 11568]
Length = 315
Score = 40.2 bits (92), Expect = 0.089, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 26/115 (22%), Gaps = 21/115 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L + P V+AGDFN + + P
Sbjct: 218 QAQRLAGL---RAGLEGPVVVAGDFNSVSSGRIGRQIKAETG-------LIPAPARPGTW 267
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + ++V + S H P+ +
Sbjct: 268 PS------ALPPFLGITIDHVWRSPDLALVER-----RLGQKTGSDHRPVIVRLS 311
>gi|271498824|ref|YP_003331849.1| endonuclease/exonuclease/phosphatase [Dickeya dadantii Ech586]
gi|270342379|gb|ACZ75144.1| Endonuclease/exonuclease/phosphatase [Dickeya dadantii Ech586]
Length = 380
Score = 40.2 bits (92), Expect = 0.090, Method: Composition-based stats.
Identities = 20/139 (14%), Positives = 33/139 (23%), Gaps = 22/139 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSI-GDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q E + V+ GD N + + D ++ E
Sbjct: 242 QAERVADIVRGYNLQQEYVVVMGDLNEDSANPWHSLAPLFSVADLHPVVDPALPETARYT 301
Query: 64 NVIKRNKSS-----LDYFVIDRDNKNFLIDNSFSIV-SYDQSDLDTR------------- 104
KS LDY I +D Y+ + +
Sbjct: 302 YYFSGGKSGERLNQLDYIFISTPLHQAKVDWGIERRGIYNIDKIAAKEGADPVTPFPTVT 361
Query: 105 --RSKLSTHCPLTIEYDFE 121
+ S H + +E D
Sbjct: 362 SWDTAASDHAAIWVECDLN 380
>gi|265750587|ref|ZP_06086650.1| predicted protein [Bacteroides sp. 3_1_33FAA]
gi|263237483|gb|EEZ22933.1| predicted protein [Bacteroides sp. 3_1_33FAA]
Length = 334
Score = 40.2 bits (92), Expect = 0.090, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 21/109 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q + L ++ P ++ GDFN S L F Q ++
Sbjct: 234 NRQADLLT---KAIAESPYPVIVCGDFNDTPASYAYRKI------SRLLQDCFLQAGQTW 284
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ L +F + Y S H
Sbjct: 285 SGSYQCWGGFL-------RIDYTFCSPAFQVNRYLLISNPW-----SDH 321
>gi|325690925|gb|EGD32925.1| RgfB protein [Streptococcus sanguinis SK115]
Length = 271
Score = 40.2 bits (92), Expect = 0.091, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K + +K P V+ GDFN + G + +
Sbjct: 159 QGEW-AKLEAELLKAETPLVLMGDFNNPVGQQGYQTILASPLKLQDSHTAAKEAIGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + +S H L ++
Sbjct: 218 --EGTIAGWDDNKHALKIDYVFTSQGMDVERSAVVFDGKETPVVSDHFGLEVQVTL 271
>gi|182434884|ref|YP_001822603.1| putative phospholipase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|178463400|dbj|BAG17920.1| putative phospholipase [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 326
Score = 40.2 bits (92), Expect = 0.091, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 34/129 (26%), Gaps = 14/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ-- 57
+ S+Q + L + D K I V+AGDFN ++
Sbjct: 194 VRSRQFKQLDAFLDAKNIPASEQVVVAGDFNVDGHAAEYASFLADAGLSAPETRTGHPYS 253
Query: 58 -EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS------FSIVSYDQSDLDTRRSK--- 107
+ +R + ++ + S + +
Sbjct: 254 FDTRDNSIAAERYPDDPREDLDHVLHRTGHARPAGWKNEVIKEESAPWTVSSWGKDYTYT 313
Query: 108 -LSTHCPLT 115
LS H P+
Sbjct: 314 NLSDHYPVI 322
>gi|124087428|ref|XP_001346851.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145474943|ref|XP_001423494.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|50057240|emb|CAH03224.1| Conserved hypothetical protein with homology to transcriptional
regulator [Paramecium tetraurelia]
gi|124390554|emb|CAK56096.1| unnamed protein product [Paramecium tetraurelia]
Length = 326
Score = 40.2 bits (92), Expect = 0.091, Method: Composition-based stats.
Identities = 22/140 (15%), Positives = 36/140 (25%), Gaps = 25/140 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVI-AGDFNRKINSIGDT-----------------------D 40
Q L + + + ++ +I GD N +S +
Sbjct: 186 QIVQLVQKMEAEKESDDQILIFCGDLNSLPHSNPIQYIQKNKPIVERIEKSSNQIKLQKE 245
Query: 41 DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
F P N K +DY N ++ V Q
Sbjct: 246 IFEHYGPPKLNWQSAYHPFPKFTNYTTDFKGCIDYIFYHNANVEKILRLPEESV-LQQEV 304
Query: 101 LDTRRSKLSTHCPLTIEYDF 120
R+ S H P+ +DF
Sbjct: 305 ALPNRNFPSDHLPILASFDF 324
>gi|270293069|ref|ZP_06199280.1| RgfB protein [Streptococcus sp. M143]
gi|270279048|gb|EFA24894.1| RgfB protein [Streptococcus sp. M143]
Length = 271
Score = 40.2 bits (92), Expect = 0.092, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 30/117 (25%), Gaps = 3/117 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q EW ++ D P ++AGDFN G +D + S
Sbjct: 158 QEEW-ARFEDVLKDLNKPLILAGDFNNPAGQEGYQAILASPLDLQDAFEVAK--ERSGSY 214
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + S ++S H L +++
Sbjct: 215 TVPPEIDGWKGNTEPLRIDYVFTTKELEVESLHVVFDGQNSPQVSDHYGLNAVLNWK 271
>gi|325474697|gb|EGC77883.1| endonuclease/exonuclease/phosphatase [Treponema denticola F0402]
Length = 342
Score = 40.2 bits (92), Expect = 0.093, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 14/130 (10%)
Query: 1 MLSQQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMD-PDGLLIRFPQ 57
+ QQ E K + + PF+I GDFN+ + +F +
Sbjct: 208 IRRQQEEQAYKRLKELKASEPQTPFIICGDFNQTLEEFSLLSEFDNCWNIEAYRAAAQEG 267
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN----------SFSIVSYDQSDLDTRRSK 107
+ K + +D+F + + + + S K
Sbjct: 268 NQPEGSYFYKESWEGIDHFFYSDNLSDGKNFDLSFFCVINLKPLTDTSGKPDKYSVYSGK 327
Query: 108 L-STHCPLTI 116
S H P+ I
Sbjct: 328 GYSDHLPIGI 337
>gi|315037291|ref|YP_004030859.1| Exodeoxyribonuclease III [Lactobacillus amylovorus GRL 1112]
gi|325955769|ref|YP_004286379.1| Exodeoxyribonuclease III [Lactobacillus acidophilus 30SC]
gi|312275424|gb|ADQ58064.1| Exodeoxyribonuclease III [Lactobacillus amylovorus GRL 1112]
gi|325332334|gb|ADZ06242.1| Exodeoxyribonuclease III [Lactobacillus acidophilus 30SC]
gi|327182596|gb|AEA31043.1| Exodeoxyribonuclease III [Lactobacillus amylovorus GRL 1118]
Length = 275
Score = 40.2 bits (92), Expect = 0.093, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 22/124 (17%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEKE 60
K+ P + +GD+N I + + G F +
Sbjct: 155 KLDQEKPVLASGDYNCAHTEIDLKHPENNHHSAGFTDEERVDFTNLLNAGFTDTFRKVHG 214
Query: 61 S----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+R +++ +L+ N + +DT + HCP+ +
Sbjct: 215 DITDVYSWWAQRVRTAKAN-NSGWRIDYWLVSNRIADKVVRSEMMDTGKRA--DHCPILL 271
Query: 117 EYDF 120
E +
Sbjct: 272 EINL 275
>gi|302341817|ref|YP_003806346.1| endonuclease/exonuclease/phosphatase [Desulfarculus baarsii DSM
2075]
gi|301638430|gb|ADK83752.1| Endonuclease/exonuclease/phosphatase [Desulfarculus baarsii DSM
2075]
Length = 345
Score = 40.2 bits (92), Expect = 0.093, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 33/126 (26%), Gaps = 11/126 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q + ++ P ++ GDFN F + + D +
Sbjct: 223 ARQAAAILARLRER----GPLIVMGDFNTTPTWARVQTGFVDEPEQDFRGEATLAAMTAL 278
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------LSTHCPLT 115
++ + YD + L+ + S H P+
Sbjct: 279 SLREAFDQGGSADEAATLTFPADRPSRKLDHIFYDPTRLELVWRRVVVEAGQASDHLPVA 338
Query: 116 IEYDFE 121
+ +
Sbjct: 339 AAFRLK 344
>gi|237710997|ref|ZP_04541478.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229454841|gb|EEO60562.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 334
Score = 40.2 bits (92), Expect = 0.093, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 21/109 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q + L ++ P ++ GDFN S L F Q ++
Sbjct: 234 NRQADLLT---KAIAESPYPVIVCGDFNDTPASYAYRKI------SRLLQDCFLQAGQTW 284
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ L +F + Y S H
Sbjct: 285 SGSYQCWGGFL-------RIDYTFCSPAFQVNRYLLISNPW-----SDH 321
>gi|242280566|ref|YP_002992695.1| endonuclease/exonuclease/phosphatase [Desulfovibrio salexigens DSM
2638]
gi|242123460|gb|ACS81156.1| Endonuclease/exonuclease/phosphatase [Desulfovibrio salexigens DSM
2638]
Length = 349
Score = 40.2 bits (92), Expect = 0.093, Method: Composition-based stats.
Identities = 16/127 (12%), Positives = 37/127 (29%), Gaps = 13/127 (10%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFN----RKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
Q E+L +W + + + +++ GDFN + I + D +
Sbjct: 228 QAEYLTEWIN-RESRDVDYLVGGDFNFQAYIRGTPIPEKDLSKPPFINQFRANLAGVSE- 285
Query: 61 STCNVIKRNKSSLDY---FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + ++ + S + D S H P+
Sbjct: 286 ILSSPDESAEALHKNFTFEERKHRYDFLFYSKGLVLESAEVIDTIAS----SDHYPVFGS 341
Query: 118 YDFEKGN 124
+ F + +
Sbjct: 342 FLFARES 348
>gi|163860141|gb|ABY41236.1| probable endonuclease/exonuclease/phosphatase family protein
[Pseudomonas fluorescens]
Length = 292
Score = 40.2 bits (92), Expect = 0.093, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 32/111 (28%), Gaps = 22/111 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I ++ GD N + Q L + PQ + + + +
Sbjct: 184 AYIRELIGGYKHQILMGDMNTHASD------LLQTSPLRDLGLLAPQLEATFPSWRPQR- 236
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ L+ + ++ + +S H P+ +E
Sbjct: 237 ----------CLDHILLSPTLTLERVEVLAQP-----ISDHLPVAVEIRLP 272
>gi|123476231|ref|XP_001321289.1| Endonuclease/Exonuclease/phosphatase family protein [Trichomonas
vaginalis G3]
gi|121904112|gb|EAY09066.1| Endonuclease/Exonuclease/phosphatase family protein [Trichomonas
vaginalis G3]
Length = 339
Score = 40.2 bits (92), Expect = 0.093, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 34/132 (25%), Gaps = 14/132 (10%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK------------INSIGDTDDFWQKMDPDGLL 52
Q + L QK+ G P ++ GD N +I + + + G
Sbjct: 208 QFDELSALMAQKVTDGYPAIVVGDLNVNARFGDEYLNLLKHFTIPNYESVDTLLKDYGEH 267
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--LST 110
E + ++ + S + LS
Sbjct: 268 PITFGNMEDVTLTEPYFQKTVQSIDYIFLFEKEQSPLKVEYKSKVNEMRVQNQPYGFLSD 327
Query: 111 HCPLTIEYDFEK 122
H + E+ F +
Sbjct: 328 HFAVESEFTFTQ 339
>gi|29830952|ref|NP_825586.1| hypothetical protein SAV_4409 [Streptomyces avermitilis MA-4680]
gi|29608065|dbj|BAC72121.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 337
Score = 40.2 bits (92), Expect = 0.093, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 14/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ ++ +A + P ++AGDFN + + L + +
Sbjct: 230 RRELGRIRDYA---VAGDDPTILAGDFNASQDHAAFRRILDTGLRDGARLAGADR---TP 283
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ L + + L+ FS S D +D + H L ++
Sbjct: 284 SWPARTAGGRLR---LGAQIDHVLVSPDFSANSADFLGID-----GTDHRALLVDLTL 333
>gi|262282134|ref|ZP_06059903.1| RgfB [Streptococcus sp. 2_1_36FAA]
gi|262262588|gb|EEY81285.1| RgfB [Streptococcus sp. 2_1_36FAA]
Length = 271
Score = 40.2 bits (92), Expect = 0.093, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K ++ +K P V+ GDFN ++ G + +
Sbjct: 159 QGEW-SKLEEELVKVKTPLVLMGDFNNPVDYEGYQHILKSPLKLQDSHKVARKISGKATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D I S +S H + +E F
Sbjct: 218 --EGAIAGWDGNQDALKIDYIFTSQGIQIESSAVVFDGKETPVVSDHFGIEVEAKF 271
>gi|254486528|ref|ZP_05099733.1| endonuclease/exonuclease/phosphatase [Roseobacter sp. GAI101]
gi|214043397|gb|EEB84035.1| endonuclease/exonuclease/phosphatase [Roseobacter sp. GAI101]
Length = 242
Score = 40.2 bits (92), Expect = 0.093, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 31/120 (25%), Gaps = 25/120 (20%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
M +Q L+K ++ P ++AGDFN
Sbjct: 143 MRRKQMLNLQKLMAER---EHPVLLAGDFN-----------------EWNTGRMPFAPPS 182
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + F++ VS + S H P+ ++ F
Sbjct: 183 TVVTPGPSFHARRP----SAQLDRFVLGPGLRSVSSHVH-QSPLSKRASDHLPIVVDIAF 237
>gi|32472920|ref|NP_865914.1| hypothetical protein RB4127 [Rhodopirellula baltica SH 1]
gi|32444157|emb|CAD73600.1| probable secreted protein [Rhodopirellula baltica SH 1]
Length = 279
Score = 40.2 bits (92), Expect = 0.093, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 33/116 (28%), Gaps = 21/116 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ + + + P ++AGD N +NS + Q +T
Sbjct: 183 SAKAINQIVSE--SPRRPALLAGDMNDVLNSPTLDE------LETMWTRVNEQVMPTTPV 234
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + D F NS+ ++ D S H P+ +
Sbjct: 235 ANPRRQ---------IDFILFRPSNSWKLIEVKVLDEAV----ASDHRPIFAVLEL 277
>gi|313158069|gb|EFR57474.1| endonuclease/exonuclease/phosphatase family protein [Alistipes sp.
HGB5]
Length = 297
Score = 40.2 bits (92), Expect = 0.094, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 13/113 (11%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIG--DTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+ P I GD N + G + +++ + E+ +
Sbjct: 195 ERMRSIAGKRTPQFIVGDMNATAGTPGGVCLEPYFKWLKSA-------CEEAPLTDPRPT 247
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-SKLSTHCPLTIEYDF 120
+ D+ + + Y D LS H P+ + F
Sbjct: 248 YHGFGKAKPLHIDHIFYRCAE---PLRYQLLDSTGYGVQYLSDHYPIVCTFRF 297
>gi|301060197|ref|ZP_07201064.1| endonuclease/exonuclease/phosphatase family protein [delta
proteobacterium NaphS2]
gi|300445709|gb|EFK09607.1| endonuclease/exonuclease/phosphatase family protein [delta
proteobacterium NaphS2]
Length = 250
Score = 40.2 bits (92), Expect = 0.094, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 14/117 (11%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS- 71
+ + +I GDFN S D + ++ + K + + N+S
Sbjct: 137 IHARDLSYPNTIIIGDFN----SNTIWDKKDRWWSHSDIMQELREIKIESAYHYQTNESQ 192
Query: 72 ---------SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L+ ++ S K+S H PL++E
Sbjct: 193 GRETTPTFFHRKNLNKAYHIDYALLSSNILPQSKVIIGKADDWLKISDHVPLSVEIR 249
>gi|302686738|ref|XP_003033049.1| hypothetical protein SCHCODRAFT_81869 [Schizophyllum commune H4-8]
gi|300106743|gb|EFI98146.1| hypothetical protein SCHCODRAFT_81869 [Schizophyllum commune H4-8]
Length = 697
Score = 40.2 bits (92), Expect = 0.094, Method: Composition-based stats.
Identities = 19/153 (12%), Positives = 32/153 (20%), Gaps = 44/153 (28%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKIN------------------------------SI 36
L I G ++ GD N +
Sbjct: 175 RMLSVRVRGLIDEGREVIVVGDLNAVSDVGDHCEGALTVRKIIDEARKEGQEVGEKEAEE 234
Query: 37 GDTD--DFWQKMDPD---------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNF 85
D + + + RF E++ K S
Sbjct: 235 MFYDTMPARRWLRDSLVEHGGPLVDVCKRFWPERKGM-YTCWNTKISARASNYGARIDFI 293
Query: 86 LIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
L+ + K S HCP+ +E+
Sbjct: 294 LVTPYLLPLIKHADIQP--DVKGSDHCPVIVEF 324
>gi|238061236|ref|ZP_04605945.1| endonuclease/exonuclease/phosphatase [Micromonospora sp. ATCC
39149]
gi|237883047|gb|EEP71875.1| endonuclease/exonuclease/phosphatase [Micromonospora sp. ATCC
39149]
Length = 1091
Score = 40.2 bits (92), Expect = 0.094, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 31/133 (23%), Gaps = 17/133 (12%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIG-------------DTDDFWQKMDP 48
+Q + V GD N + +
Sbjct: 847 EQARYGAALVTAIHNADRNSRVVYGGDLNVFPRPDDPIATGADPTPSDQLAALYDAGLHS 906
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR--S 106
+ + + +LD+ ++ ++ L+ + V+ D T
Sbjct: 907 LWDDLVADVPSSAYSYSFQGQAQTLDHLFVNDALRDELVQVRAAHVNADWPAEFTGDGSR 966
Query: 107 KLSTHCPLTIEYD 119
S H P +
Sbjct: 967 GSSDHDPQVARFR 979
>gi|170076537|ref|YP_001733176.1| endonuclease/exonuclease/phosphatase family protein [Synechococcus
sp. PCC 7002]
gi|169887399|gb|ACB01107.1| Endonuclease/Exonuclease/phosphatase family [Synechococcus sp. PCC
7002]
Length = 1686
Score = 40.2 bits (92), Expect = 0.094, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 41/147 (27%), Gaps = 27/147 (18%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDT--------DDFWQKMDPDGLLI 53
Q + W D F+I GD N D + + +
Sbjct: 687 QAAIAVNAWLDTDPTGSGDSDFLILGDLNAYGMEDPIQYLLDEGYVDTIEKFLPDGESIY 746
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------- 105
F + + + +LDY + + + ++D + ++ D++
Sbjct: 747 SFGFPLDLETSPQVQAFGALDYALANESLASQVVDAAEWHINADEASAFDYNTNFKPQAQ 806
Query: 106 ---------SKLSTHCPLTIEYDFEKG 123
+ S H PL I D
Sbjct: 807 IDGLFGANPFRSSDHDPLIIGLDLSSE 833
>gi|296219454|ref|XP_002755889.1| PREDICTED: deoxyribonuclease-1-like [Callithrix jacchus]
Length = 282
Score = 40.2 bits (92), Expect = 0.095, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 42/116 (36%), Gaps = 5/116 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D + K G ++ GDFN + + + ++ + + +
Sbjct: 165 EIDALYDVYLDVQEKWGLEDIMLMGDFNAGCSYVRPSQWSSIRLRTSPIFQWLIPDT-AD 223
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTI 116
+ + + V ++ ++ +S ++ + + +S H P+ +
Sbjct: 224 TTAMSTHCAYDRIVVAGTLLQDSVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEV 279
>gi|332711928|ref|ZP_08431858.1| hypothetical protein LYNGBM3L_69430 [Lyngbya majuscula 3L]
gi|332349256|gb|EGJ28866.1| hypothetical protein LYNGBM3L_69430 [Lyngbya majuscula 3L]
Length = 365
Score = 40.2 bits (92), Expect = 0.096, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 31/117 (26%), Gaps = 16/117 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E + + Q K P V+ GD N +++ + L +
Sbjct: 244 EEIGNYIRQIEK---PVVLIGDLNVT-----MWSPYYKSLIESSGLRDARAGFGILPTLS 295
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
K + ++ +D+ + T S H P+ +
Sbjct: 296 KFSPANPW--------LAIPVDHCLVSRDVKVIKMRTGPDLGSDHLPVITDIALRAS 344
>gi|283853514|ref|ZP_06370755.1| Endonuclease/exonuclease/phosphatase [Desulfovibrio sp. FW1012B]
gi|283571095|gb|EFC19114.1| Endonuclease/exonuclease/phosphatase [Desulfovibrio sp. FW1012B]
Length = 251
Score = 40.2 bits (92), Expect = 0.096, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 28/115 (24%), Gaps = 22/115 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E L ++ +P V+ GDFN + + + + + +
Sbjct: 141 QTEALLALVRERQ--DVPTVLLGDFN-------EWMPANRTVRAVSRELGATPAPATFPS 191
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ S + S H PL E
Sbjct: 192 CFP-----------VLSLDRIWTSPGLALTSLRRHRPAYA--TCSDHLPLVAELR 233
>gi|15823783|dbj|BAB69072.1| sphingomyelinase [Pseudomonas sp. TK4]
Length = 516
Score = 40.2 bits (92), Expect = 0.096, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 30/136 (22%), Gaps = 24/136 (17%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQK--------MDPDGLLIRF 55
Q ++ + D + I I GD N S Q
Sbjct: 190 QFREMRAFIDRENIPANEVLFIGGDLNVIRGSDEYPHMLAQLDLREPDSYAGASATFDTR 249
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS---DLDTRRSKLST-- 110
K N L+ N VSY + D+ + R S
Sbjct: 250 RNGVTGYQYPYKDNGPGKAPSNPPEYLDYILVSNRHGQVSYWHNQALDIPSPRWSASDGV 309
Query: 111 ----------HCPLTI 116
H P+
Sbjct: 310 NTWYYQDYSDHYPVAA 325
>gi|120553484|ref|YP_957835.1| exodeoxyribonuclease III Xth [Marinobacter aquaeolei VT8]
gi|120323333|gb|ABM17648.1| exodeoxyribonuclease III Xth [Marinobacter aquaeolei VT8]
Length = 268
Score = 40.2 bits (92), Expect = 0.096, Method: Composition-based stats.
Identities = 11/89 (12%), Positives = 25/89 (28%), Gaps = 4/89 (4%)
Query: 33 INSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
+ D + +M ++ ++ + S I L+
Sbjct: 181 PHERAWLDRLFDEMGCIDAFREINKQSNQFTWWPEQTEGSRKKAGI--RVDYHLLTPGIR 238
Query: 93 IVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ S H P+ ++YD E
Sbjct: 239 KTIR--DGWIDDETRFSDHAPVIMDYDIE 265
>gi|332239562|ref|XP_003268970.1| PREDICTED: endonuclease/exonuclease/phosphatase family
domain-containing protein 1 [Nomascus leucogenys]
Length = 569
Score = 40.2 bits (92), Expect = 0.097, Method: Composition-based stats.
Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 2/107 (1%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ-EKESTCNVIKRNKS 71
+ +K +I GDF + +S +K F ++ +
Sbjct: 433 LQETLKGEKDVIILGDFGQGPDSNDYDILRKEKFHHLIPAHTFTNISTKNPQGWKSLDNI 492
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + ++ + + + S HCP+ E
Sbjct: 493 WISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGV-ASEHCPVLAEL 538
>gi|312866373|ref|ZP_07726591.1| exodeoxyribonuclease III [Streptococcus downei F0415]
gi|311098067|gb|EFQ56293.1| exodeoxyribonuclease III [Streptococcus downei F0415]
Length = 276
Score = 40.2 bits (92), Expect = 0.097, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 22/122 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMDPDGLLIRFPQEKES 61
+ P + +GD+N I + + + G F
Sbjct: 157 LDQQKPVLASGDYNVAHKEIDLANPTSNRRSPGFTDEERQGFTNLLDKGFTDTFRYMHGD 216
Query: 62 ----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+R+K+S +L N + +D+ + H P+ +E
Sbjct: 217 IPNVYSWWAQRSKTSKIN-NTGWRIDYWLTSNRIADKISKSDMIDSGSRQ--DHGPILLE 273
Query: 118 YD 119
D
Sbjct: 274 ID 275
>gi|298386270|ref|ZP_06995826.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 1_1_14]
gi|298260647|gb|EFI03515.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 1_1_14]
Length = 373
Score = 40.2 bits (92), Expect = 0.097, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 40/153 (26%), Gaps = 38/153 (24%)
Query: 4 QQGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L+ AD + + VI GDFN + + + + FP ++
Sbjct: 220 HAARILRTEADSLLNIRLHPQLVIMGDFNDYPTNKSIKEIL--EATDPQQSVTFPNPRKL 277
Query: 62 TC----NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ------------------- 98
R+ S Y + ++ + S
Sbjct: 278 YHLLARKATSRHFGSYKYHGKWGLLDHLIVSGNLLDTSSKFFTGEDKATVARLPFLLTED 337
Query: 99 ----SDLDTRRSK-------LSTHCPLTIEYDF 120
D R K +S H P+ +++
Sbjct: 338 KKYGDDEPFRTYKGMKYQGGISDHLPVYADFEL 370
>gi|270262862|ref|ZP_06191133.1| endonuclease/exonuclease/phosphatase [Serratia odorifera 4Rx13]
gi|270043546|gb|EFA16639.1| endonuclease/exonuclease/phosphatase [Serratia odorifera 4Rx13]
Length = 298
Score = 40.2 bits (92), Expect = 0.097, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 11/118 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + ++ GD N S+ + + + P ++
Sbjct: 191 QVRELNDRTIEIRGIK---LLFGDMNDVPGSVT-WTELSRYWND-----IMPTTQDGRSW 241
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + +DY + L + S D + + +S H P+ E +
Sbjct: 242 PAENAEIKVDYIFSGNAQRWHLDSLTVPNASGDWNGIHWPA--VSDHLPVVAELRLTE 297
>gi|167524735|ref|XP_001746703.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774973|gb|EDQ88599.1| predicted protein [Monosiga brevicollis MX1]
Length = 365
Score = 40.2 bits (92), Expect = 0.097, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 12/105 (11%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
QK +P+V+AGDFN + +S LL P + +
Sbjct: 268 LVQKWAQDVPYVLAGDFNFQPDSDCYH-----------LLTTEPDHTNMATTPDNKFCGT 316
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
LDY + + R S H + +
Sbjct: 317 LDYIFLAPKLGASAASVIPHRENVQDGPYPNARE-PSDHLLIWAD 360
>gi|149920938|ref|ZP_01909399.1| hypothetical protein PPSIR1_13970 [Plesiocystis pacifica SIR-1]
gi|149818210|gb|EDM77665.1| hypothetical protein PPSIR1_13970 [Plesiocystis pacifica SIR-1]
Length = 276
Score = 40.2 bits (92), Expect = 0.097, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 13/130 (10%)
Query: 1 MLSQQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
+ ++Q + + +++ + GD N DTD
Sbjct: 147 VRARQLDAIFAALERERDDPQVDATIFCGDLNFGDGERPDTDHLDPDFVDAWTA--LRPG 204
Query: 59 KESTCNVIKRN---KSSLDYFVIDRDNKNFLID-NSFSIVSYDQSDLDT-----RRSKLS 109
+ I+R+ ++ R L+ +S+ S + + R S
Sbjct: 205 EPGHTWDIERSDMARAGSFPGEPSRRLDRVLVRGSSWRPASIEIIGDEPVVPGQRGLFPS 264
Query: 110 THCPLTIEYD 119
H L E +
Sbjct: 265 DHFGLVAELE 274
>gi|71737390|ref|YP_276477.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|71557943|gb|AAZ37154.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. phaseolicola 1448A]
Length = 363
Score = 40.2 bits (92), Expect = 0.097, Method: Composition-based stats.
Identities = 21/132 (15%), Positives = 33/132 (25%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL----------- 51
+Q +K D+ G P++I GDFN Q++
Sbjct: 231 QKQVVATEKQLDKLESCGTPWLIGGDFNLLPLGQYQRLPEEQRLGYAADSELHELWEKYP 290
Query: 52 --LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + DR S VS DT +S
Sbjct: 291 MIPDNAESGGIDRGKWLTHFPNDSRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--IS 348
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 349 DHLPVIGRFLLP 360
>gi|327392829|dbj|BAK10251.1| hypothetical UPF0294 protein YafD [Pantoea ananatis AJ13355]
Length = 256
Score = 40.2 bits (92), Expect = 0.098, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q + P ++AGDFN Q+++ Q +E R K+
Sbjct: 169 EQIVHHRGPVIMAGDFNA---------WSRQRINALYRFAHQMQLEEVMFTADHRRKAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E++
Sbjct: 220 RPLDFVFYRDMHVSEASVLVT------------RASDHNPLLVEFN 253
>gi|324511832|gb|ADY44920.1| Neutral sphingomyelinase [Ascaris suum]
Length = 392
Score = 40.2 bits (92), Expect = 0.099, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 34/126 (26%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT---------DDFWQKMDPDGLLIRF 55
Q L ++ ++ GDFN + + +G D + + + G
Sbjct: 155 QAFELSQFVKHTSHAADLTILTGDFNLEPDDLGYRLIVDNANLIDAWLARPNKSGCETGM 214
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK---LSTHC 112
++ C + K + +V + K S H
Sbjct: 215 TCDRPDNCYTARNLKQPNPAGKRLDYIMYKCGKSDVDLVMCENRLGRIPGDKQINYSDHL 274
Query: 113 PLTIEY 118
+ ++
Sbjct: 275 GVYADF 280
>gi|326775401|ref|ZP_08234666.1| sphingomyelin phosphodiesterase [Streptomyces cf. griseus
XylebKG-1]
gi|326655734|gb|EGE40580.1| sphingomyelin phosphodiesterase [Streptomyces cf. griseus
XylebKG-1]
Length = 326
Score = 40.2 bits (92), Expect = 0.099, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 34/129 (26%), Gaps = 14/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ-- 57
+ S+Q + L + D K I V+AGDFN ++
Sbjct: 194 VRSRQFKQLDAFLDAKNIPASEQVVVAGDFNVDGHAAEYASFLADAGLSAPETRTGHPYS 253
Query: 58 -EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS------FSIVSYDQSDLDTRRSK--- 107
+ +R + ++ + S + +
Sbjct: 254 FDTRDNSIAAERYPDDPREDLDHVLHRTGHARPAGWKNEVIKEESAPWTVSSWGKDYTYT 313
Query: 108 -LSTHCPLT 115
LS H P+
Sbjct: 314 NLSDHYPVI 322
>gi|258648749|ref|ZP_05736218.1| endonuclease/Exonuclease/phosphatase family protein [Prevotella
tannerae ATCC 51259]
gi|260851066|gb|EEX70935.1| endonuclease/Exonuclease/phosphatase family protein [Prevotella
tannerae ATCC 51259]
Length = 337
Score = 40.2 bits (92), Expect = 0.099, Method: Composition-based stats.
Identities = 18/144 (12%), Positives = 35/144 (24%), Gaps = 31/144 (21%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDG---------LLIR 54
+ L++ D + VI GDFN + + D
Sbjct: 192 AQRLRQEIDGLTRNGRDRKVVIMGDFNDEHTDPSIATVLEARKWTDAIQPPFLCVLTADL 251
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNK------------NFLIDNSFSIVSYDQSDLD 102
+ + + LD +++ D +
Sbjct: 252 KAANGIQGTHKFQGRWAQLDQIIVNDRLLTTEGLHTSPKDCFIFTDAPLLKYDAGDHGVV 311
Query: 103 TRRSKL--------STHCPLTIEY 118
RS L S H P+ +++
Sbjct: 312 PYRSFLGSFYQGGFSDHLPVVVDF 335
>gi|254411438|ref|ZP_05025215.1| endonuclease/exonuclease/phosphatase family [Microcoleus
chthonoplastes PCC 7420]
gi|196181939|gb|EDX76926.1| endonuclease/exonuclease/phosphatase family [Microcoleus
chthonoplastes PCC 7420]
Length = 261
Score = 40.2 bits (92), Expect = 0.099, Method: Composition-based stats.
Identities = 10/113 (8%), Positives = 27/113 (23%), Gaps = 5/113 (4%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
++ + GDFN + S+ + + + + +
Sbjct: 151 ARLIRDRMIHCHPDNTYLFLTGDFNAEPGSLP-----REILSDSSTNSMILHDALAGVEL 205
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K+ D+ + + + S H P+ +
Sbjct: 206 EKQQSIHGFTGEAFAAVDTIYYDSRLRQETVTVDNRKWQGIFPSDHFPVIANF 258
>gi|197265396|ref|ZP_03165470.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197243651|gb|EDY26271.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
Length = 252
Score = 40.2 bits (92), Expect = 0.099, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 18/119 (15%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L W + + P ++AGDFN ++ GL +E
Sbjct: 150 RQAQLTMLAGWVNA-LPESEPVLVAGDFNDW------RQKAGPPLNAAGL-------EEI 195
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + + N+ S + LS H PL+ E
Sbjct: 196 FTRAHGRPARTFPVSMPLLRLDRIYVKNA--NASSPTALPLRNWRHLSDHAPLSAEIHL 252
>gi|324995051|gb|EGC26964.1| RgfB protein [Streptococcus sanguinis SK678]
gi|327462906|gb|EGF09227.1| RgfB protein [Streptococcus sanguinis SK1]
Length = 271
Score = 40.2 bits (92), Expect = 0.100, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K ++ +K P V+ GDFN + G + +
Sbjct: 159 QGEW-AKLEEELLKAETPLVLMGDFNNPVGQQGYQTILASPLKLQDSHTAAKEAIGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + +S H L ++
Sbjct: 218 --EGTIAGWDDNKHALKIDYVFTSQGMDVERSAVVFDGKETPVVSDHFGLEVQVAL 271
>gi|332883576|gb|EGK03859.1| hypothetical protein HMPREF9456_01926 [Dysgonomonas mossii DSM
22836]
Length = 315
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 21/145 (14%), Positives = 40/145 (27%), Gaps = 32/145 (22%)
Query: 6 GEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDG--------LLIRF 55
+ L+ D ++ G +I GDFN N + ++ K LL
Sbjct: 167 AQLLRHKIDSVLLLRKGANIIIMGDFNDYPNDVSMSEVLGGKRIESDISVKGLYNLLYDR 226
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ---------SDLDTRRS 106
+KE+ K +D V++ + + +
Sbjct: 227 IDKKEAGSYKYKGKWGFIDQIVVNGNLLKKGGKVFVKDKTVHVFSAEFLLEADNKKYGGQ 286
Query: 107 KL-------------STHCPLTIEY 118
K S H P+ ++
Sbjct: 287 KPFRTYSGFKYLGGYSDHLPIYMDL 311
>gi|261205712|ref|XP_002627593.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Ajellomyces dermatitidis SLH14081]
gi|239592652|gb|EEQ75233.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Ajellomyces dermatitidis SLH14081]
gi|239611196|gb|EEQ88183.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Ajellomyces dermatitidis ER-3]
Length = 773
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 28/125 (22%), Gaps = 25/125 (20%)
Query: 22 PFVIAGDFNRKINS---------------IGDTDDFWQKMDPDGLLIRFP-------QEK 59
P +I GDFN S + + G+ F +
Sbjct: 614 PLIICGDFNSYPGSAVYELMSRGHLIEDHPDLEKRLYGNLSRRGMSYPFNLKSAYGAIGE 673
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCPLTIE 117
N +DY + SY S H L E
Sbjct: 674 LDFTNYTPDFADVIDYIWYTSNALQVTGLLGAVDKSYLQRVPGFPNY-HFPSDHLALMAE 732
Query: 118 YDFEK 122
+ F+
Sbjct: 733 FSFKS 737
>gi|222616232|gb|EEE52364.1| hypothetical protein OsJ_34428 [Oryza sativa Japonica Group]
Length = 1102
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 14/104 (13%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ + +P+++ GDFN + + E + NK
Sbjct: 559 RNSSNLPWLVIGDFNEAL------------WQFEHFSSHPRGEPQMGTPFTYDNKRQGRN 606
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
V R + I ++ ++ + L S S HCP++++
Sbjct: 607 NVRVR--LDRAIADNAWRDTFPNATLAHLASPRSDHCPISLQLS 648
>gi|149907902|ref|ZP_01896570.1| putative phospholipase C precursor [Moritella sp. PE36]
gi|149808908|gb|EDM68839.1| putative phospholipase C precursor [Moritella sp. PE36]
Length = 428
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 37/113 (32%), Gaps = 5/113 (4%)
Query: 5 QGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQ---EK 59
Q E + ++ ++ I ++AGDFN I GD D ++ + +
Sbjct: 305 QLEEMGEFIREQNIPADEAVILAGDFNVNKIGLPGDRDQMAYILNATEPENKGHNLSFDS 364
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ K LDY + DN + + + LS H
Sbjct: 365 NTNNWAEKPYLEYLDYTLTGNDNLQPISASQEIFAPRVLTKSLWGNWDLSDHY 417
>gi|298207487|ref|YP_003715666.1| hypothetical protein CA2559_04510 [Croceibacter atlanticus
HTCC2559]
gi|83850123|gb|EAP87991.1| hypothetical protein CA2559_04510 [Croceibacter atlanticus
HTCC2559]
Length = 324
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 35/131 (26%), Gaps = 26/131 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L+ + ++ F++ GDFN + + + +S +
Sbjct: 197 LRALSKEQ--PNQRFIVMGDFNDDPHDNSIKSLIEFGLYNPMETLL----TKSKGTTKYK 250
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------------------- 108
+L VI + + S D + + +
Sbjct: 251 GHWNLFDQVIISHSFLKYQKKKLNFKSASIYDPEFLKQRHGKYKGTPHRTFGGRNYTGGY 310
Query: 109 STHCPLTIEYD 119
S H P+ + +
Sbjct: 311 SDHFPVYVTLE 321
>gi|332184956|ref|ZP_08386705.1| endonuclease/Exonuclease/phosphatase family protein [Sphingomonas
sp. S17]
gi|332014680|gb|EGI56736.1| endonuclease/Exonuclease/phosphatase family protein [Sphingomonas
sp. S17]
Length = 231
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 29/116 (25%), Gaps = 20/116 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + P V+ GD N G DF + F +
Sbjct: 133 RRQAGAILSHLASCL-HQHPTVMMGDLNEWTRGAGCLRDFARDFTFADTGPSFHARRPIG 191
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ +++ T R K S H P+ +
Sbjct: 192 ------------------RLDRIMVSPELRVMACGVHASATSR-KASDHLPIWAKI 228
>gi|312277609|gb|ADQ62266.1| Metal-dependent hydrolase [Streptococcus thermophilus ND03]
Length = 303
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 5/109 (4%)
Query: 5 QGEWLKKWADQKIKT-GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q EW +++ ++ G P ++AGDFN G + + S
Sbjct: 191 QEEW--ARIEERFQSIGKPIILAGDFNNPAGREGYQTILASPLKLQDSFQVAQKTNGSYT 248
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
V +++ +S +S H
Sbjct: 249 -VGPGIDGWKGNE-EPLRIDYVFASQEWAVNRLSVIFDGNNQSLVSDHY 295
>gi|332362226|gb|EGJ40026.1| RgfB protein [Streptococcus sanguinis SK1056]
Length = 271
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 29/116 (25%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K + +K P V+ GDFN + G + +
Sbjct: 159 QGEW-AKLEAELLKVKTPLVLMGDFNNPVGQQGYQTILASPLKLQDSHAVAREAIGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + +S H + ++
Sbjct: 218 --EGTIAGWDDNKHALKIDYVFTSQGMDVERSAVVFDGKETPVVSDHFGIEVQVTL 271
>gi|238027065|ref|YP_002911296.1| endonuclease/exonuclease/phosphatase [Burkholderia glumae BGR1]
gi|237876259|gb|ACR28592.1| Endonuclease/exonuclease/phosphatase [Burkholderia glumae BGR1]
Length = 285
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 14/106 (13%), Positives = 27/106 (25%), Gaps = 9/106 (8%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI----KRNKSSL 73
+ ++ GDFN L+ + Q +
Sbjct: 184 ARALDAIVCGDFNSAYRDDAYRRITAPIAGAPDLVDAWVQAHPGQTPPPTAGVYDTEQWQ 243
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
D + D + IV + ++ S H P+ +E
Sbjct: 244 DGAMTC-DFVFVTDTLAKRIVRCEID----GATRASDHQPILLELR 284
>gi|323339285|ref|ZP_08079576.1| RgfB protein [Lactobacillus ruminis ATCC 25644]
gi|323093286|gb|EFZ35867.1| RgfB protein [Lactobacillus ruminis ATCC 25644]
Length = 272
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 16/112 (14%), Positives = 29/112 (25%), Gaps = 5/112 (4%)
Query: 9 LKKW---ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L +W + G VI GDFN N+ G K+ ++ +
Sbjct: 159 LDEWENAVEALAAQGESLVIMGDFNNPANTKGYQAILDSKLLLRDTYAEADVKEGENT-I 217
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+F + + +S H ++ E
Sbjct: 218 EADIDGWEGNKD-ALRIDFIFATKNFVPQTSKVVFDGKKTPAISDHFGVSCE 268
>gi|327356664|gb|EGE85521.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Ajellomyces dermatitidis ATCC 18188]
Length = 779
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 28/125 (22%), Gaps = 25/125 (20%)
Query: 22 PFVIAGDFNRKINS---------------IGDTDDFWQKMDPDGLLIRFP-------QEK 59
P +I GDFN S + + G+ F +
Sbjct: 620 PLIICGDFNSYPGSAVYELMSRGHLIEDHPDLEKRLYGNLSRRGMSYPFNLKSAYGAIGE 679
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCPLTIE 117
N +DY + SY S H L E
Sbjct: 680 LDFTNYTPDFADVIDYIWYTSNALQVTGLLGAVDKSYLQRVPGFPNY-HFPSDHLALMAE 738
Query: 118 YDFEK 122
+ F+
Sbjct: 739 FSFKS 743
>gi|313203809|ref|YP_004042466.1| endonuclease/exonuclease/phosphatase [Paludibacter propionicigenes
WB4]
gi|312443125|gb|ADQ79481.1| Endonuclease/exonuclease/phosphatase [Paludibacter propionicigenes
WB4]
Length = 313
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 6/126 (4%)
Query: 1 MLSQQGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+ ++Q +K+ ++ IP +I GDFN +++ + + + + K
Sbjct: 174 IRAKQCREIKEHLLNEFYNPNIPQLICGDFNIEMDDRVNYQRMLSTL-EANNGLISGEVK 232
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR----RSKLSTHCPLT 115
+ + + D + + R S LS H +
Sbjct: 233 CTYDEIDNNLARNAQGEKKVIDYILVRNEQLIHRIERKVHTFYARIGEKSSNLSDHYAME 292
Query: 116 IEYDFE 121
F
Sbjct: 293 ANIVFN 298
>gi|253689509|ref|YP_003018699.1| Endonuclease/exonuclease/phosphatase [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251756087|gb|ACT14163.1| Endonuclease/exonuclease/phosphatase [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 262
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 37/114 (32%), Gaps = 21/114 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L +Q + P ++AGDFN Q+++ +E +
Sbjct: 169 KQLAAIGEQLLHHQGPAIMAGDFNA---------WSQQRINALNRFATRMGLQEVSFVDD 219
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+R K+ + + +S + + S H PL +E+
Sbjct: 220 QRRKAFGRPLDFVFYRELTVNQSSVLVT------------QASDHNPLLVEFSL 261
>gi|163938601|ref|YP_001643485.1| sphingomyelin phosphodiesterase [Bacillus weihenstephanensis KBAB4]
gi|163860798|gb|ABY41857.1| Sphingomyelin phosphodiesterase [Bacillus weihenstephanensis KBAB4]
Length = 333
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 34/137 (24%), Gaps = 19/137 (13%)
Query: 4 QQGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIR 54
+Q + ++++ + I +I GD N NS + ++ +
Sbjct: 197 KQLQEIQEFIKNKNIPNNEYVLIGGDMNVNKINAENNSNSEYASMFKTLHASVPSYTGHT 256
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------ 108
+ + + + + SF + Q
Sbjct: 257 ATWDATTNSIAKYNYPDAPAEHLDYIIASKDHANPSFVENNVLQVKSPKWSVTSWFKKYT 316
Query: 109 ----STHCPLTIEYDFE 121
S H P+ +
Sbjct: 317 YDDYSDHYPVEATISMK 333
>gi|325859957|ref|ZP_08173084.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
denticola CRIS 18C-A]
gi|325482483|gb|EGC85489.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
denticola CRIS 18C-A]
Length = 356
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 28/115 (24%), Gaps = 15/115 (13%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN +S + SLD ++
Sbjct: 241 ADPRILVMGDFNDYADSPSVRLLCTRGFVNV-SARAHGNNGAKGTYRYHGAWGSLDQILV 299
Query: 79 DRDNKNFLIDNSFSIVSY---DQSDL-----------DTRRSKLSTHCPLTIEYD 119
+ ++I ++ + + S H PL ++
Sbjct: 300 SENLCPWVISCHVHDAAFLLEEDDKYGGVKPRRNYNGMRYNNGFSDHLPLVLQMR 354
>gi|300712153|ref|YP_003737967.1| endonuclease/exonuclease/phosphatase family protein
[Halalkalicoccus jeotgali B3]
gi|299125836|gb|ADJ16175.1| endonuclease/exonuclease/phosphatase family protein
[Halalkalicoccus jeotgali B3]
Length = 364
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 12/115 (10%), Positives = 29/115 (25%), Gaps = 12/115 (10%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL---IRFPQEKESTCNVIKRNKSSL 73
+ +V+ GD N + D + + + + +
Sbjct: 249 LADDASYVLLGDMNAAPDGDRPLDPAGKFLFENEDFTTDRLPTSPGGAQRGNRYATRFGG 308
Query: 74 DYFVIDRDNKNFLIDN------SFSIVSYDQSDLD---TRRSKLSTHCPLTIEYD 119
D + L S ++ + SD + S H + + +
Sbjct: 309 DIEGVVEQIDYVLPSPDLSVRDSAAVWPSEDSDERGLLSDVRTASDHRLVWADIE 363
>gi|255532422|ref|YP_003092794.1| endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
gi|255345406|gb|ACU04732.1| Endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
Length = 312
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 38/116 (32%), Gaps = 21/116 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L K +P +IAGDFN S Q++ +
Sbjct: 216 QATELVKIVKTFT---LPLIIAGDFNATPMSNPL-TILRQELS------WGCKSSCPLTF 265
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++ S++DY ++ F+++SY S S H PL E
Sbjct: 266 SAQKPGSTIDYVMMRP-------AEKFNVLSYVT----VNESYASDHLPLVTEIQL 310
>gi|255077378|ref|XP_002502331.1| predicted protein [Micromonas sp. RCC299]
gi|226517596|gb|ACO63589.1| predicted protein [Micromonas sp. RCC299]
Length = 328
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 21/144 (14%), Positives = 37/144 (25%), Gaps = 31/144 (21%)
Query: 5 QGEWLKKWADQKIKTGIP-----FVIAGDFNRKINSIGDTDDFWQKMD------------ 47
Q L + + + P V AGDFN S
Sbjct: 185 QARRLLGEVELFLASNSPIGSVPVVTAGDFNSVPGS-EVHSAMLGGFGGRRLRSAYAAAI 243
Query: 48 -----------PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY 96
D + + + NV +DY +D +
Sbjct: 244 GEGVVRGADGGSDSSVAVGKHGEPAHTNVTPGFTDCIDYVFVDDGV--AVRSAMPLPGRD 301
Query: 97 DQSDLDTRRSKLSTHCPLTIEYDF 120
+ + ++ S H PLT++ +
Sbjct: 302 EVATGLPDATRGSDHLPLTVDLEL 325
>gi|157371297|ref|YP_001479286.1| endonuclease/exonuclease/phosphatase [Serratia proteamaculans 568]
gi|157323061|gb|ABV42158.1| Endonuclease/exonuclease/phosphatase [Serratia proteamaculans 568]
Length = 359
Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 28/105 (26%), Gaps = 16/105 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
K+ +P ++ GD N + L+ + +
Sbjct: 229 KSAAKSELPVIVTGDLNDVA-----WSTTTRLFLKVSGLLDPRRGRGMFSTFHAGYPFLR 283
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ +F++ + + S S H P+ +E
Sbjct: 284 WPLDHVFHSDHFVLGSLRRLTSVG-----------SDHFPIMVEL 317
>gi|261341374|ref|ZP_05969232.1| endonuclease/exonuclease/phosphatase family protein [Enterobacter
cancerogenus ATCC 35316]
gi|288316685|gb|EFC55623.1| endonuclease/exonuclease/phosphatase family protein [Enterobacter
cancerogenus ATCC 35316]
Length = 253
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 15/116 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L +W + + G P V+AGDFN + + + R
Sbjct: 153 QLQMLAEWTNA-LPEGEPVVVAGDFNDWRQ--RANHPLKAEAGLEEIFTRAH-------- 201
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 202 --GRPARTFPVRFPLLRLDRIYVKNA--HASSPTALALLNWRHLSDHAPLSAEIHL 253
>gi|156056543|ref|XP_001594195.1| hypothetical protein SS1G_04002 [Sclerotinia sclerotiorum 1980]
gi|154701788|gb|EDO01527.1| hypothetical protein SS1G_04002 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 501
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 30/117 (25%), Gaps = 8/117 (6%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L +Q L ++ + ++ G +G+ D+ + + F ++
Sbjct: 187 LKKQKLTLNEYISTPARRLFNHLLIG-----GKVVGERDEGREPQVMWDVCRGFHPARKK 241
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K + L + Q S HCP+
Sbjct: 242 MFTC-WEQKKNARPGNFGSRIDYILCSE--DRKEWFQESNIQEGLMGSDHCPVFATL 295
>gi|153005502|ref|YP_001379827.1| endonuclease/exonuclease/phosphatase [Anaeromyxobacter sp. Fw109-5]
gi|152029075|gb|ABS26843.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter sp. Fw109-5]
Length = 289
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 9/106 (8%), Positives = 23/106 (21%), Gaps = 14/106 (13%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ ++ GD N + G + +
Sbjct: 198 EADPEALVLVGGDLNDPPTAPAL-------APLAGDGAHVDPLPSWETTWSSGSPAERLD 250
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ I + D ++ S H P+ ++
Sbjct: 251 ALLVGRASAAAIVRAVVERGTDV-------ARASDHQPVVLDLRLP 289
>gi|284025052|ref|ZP_06379450.1| phospholipase C [Staphylococcus aureus subsp. aureus 132]
Length = 236
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 100 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 159
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 160 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 219
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 220 FSDHYPIKA 228
>gi|163789004|ref|ZP_02183448.1| endonuclease/exonuclease/phosphatase family protein
[Flavobacteriales bacterium ALC-1]
gi|159875668|gb|EDP69728.1| endonuclease/exonuclease/phosphatase family protein
[Flavobacteriales bacterium ALC-1]
Length = 332
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 21/115 (18%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + +K A K+ +I GDFN S ++++
Sbjct: 236 EQAKLVKNHAS---KSNSKVIICGDFNATSYSQPYR-ILKKELND--------------S 277
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
V N Y ++ + S + LS H P+ I++
Sbjct: 278 YVSNGNGFGATYSLLRYPLRLDY---FLSDKQIEVLSHKNFDFNLSDHEPIYIKF 329
>gi|55820291|ref|YP_138733.1| hypothetical protein stu0193 [Streptococcus thermophilus LMG 18311]
gi|55736276|gb|AAV59918.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
Length = 290
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 5/109 (4%)
Query: 5 QGEWLKKWADQKIKT-GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q EW +++ ++ G P ++AGDFN G + + S
Sbjct: 178 QEEW--ARIEERFQSIGKPIILAGDFNNPAGREGYQTILASPLKLQDSFQVAQKTNGSYT 235
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
V +++ +S +S H
Sbjct: 236 -VGPGIDGWKGNE-EPLRIDYVFASQEWAVNRLSVIFDGNNQSLVSDHY 282
>gi|332322082|emb|CCA65974.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1379
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 2/103 (1%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+P ++ GDFN + + + D + V NK +
Sbjct: 129 HKTNPLPSLLIGDFNETLEPDDRGSLLFSNIGTDNFKNFLQVMELLE--VSPSNKGFTWF 186
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + L+ N I + L + LS HCPL
Sbjct: 187 RGRSKSVLDRLLLNPEWINEFPSMRLSLLQRGLSDHCPLLTNI 229
>gi|307706951|ref|ZP_07643750.1| endonuclease/Exonuclease/phosphatase family protein [Streptococcus
mitis SK321]
gi|307617665|gb|EFN96833.1| endonuclease/Exonuclease/phosphatase family protein [Streptococcus
mitis SK321]
Length = 271
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 11/106 (10%), Positives = 26/106 (24%), Gaps = 2/106 (1%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ P ++AGDFN G + ++S +
Sbjct: 168 LKELNKPLLLAGDFNNPAGQEGYQAILASPLGLQDAFEVAQ--EKSGSYTVPPEIDGWKG 225
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + ++S H L +++
Sbjct: 226 NTEPLRIDYVFTTKELEVENLHVVFDGNKGPQVSDHYGLNAILNWK 271
>gi|255728113|ref|XP_002548982.1| hypothetical protein CTRG_03279 [Candida tropicalis MYA-3404]
gi|240133298|gb|EER32854.1| hypothetical protein CTRG_03279 [Candida tropicalis MYA-3404]
Length = 481
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 4/95 (4%)
Query: 28 DFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLI 87
D + D+ Q + + + S + D F
Sbjct: 288 DLSIDGKEENKDDEQKQFLYDTTRF-IQGRRMKMYTVWNTLTNSREINYGSRIDLILFSD 346
Query: 88 DNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
++ +S S HCP+ +YD ++
Sbjct: 347 ESMVKNISQADIWPCILG---SDHCPVFTDYDIDE 378
>gi|16764176|ref|NP_459791.1| cytoplasmic protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|56414087|ref|YP_151162.1| hypothetical protein SPA1940 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62179380|ref|YP_215797.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161614949|ref|YP_001588914.1| hypothetical protein SPAB_02703 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167550511|ref|ZP_02344268.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167992044|ref|ZP_02573142.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168230699|ref|ZP_02655757.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|168236740|ref|ZP_02661798.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168240676|ref|ZP_02665608.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168263689|ref|ZP_02685662.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168466402|ref|ZP_02700264.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168820041|ref|ZP_02832041.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194443379|ref|YP_002040048.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194450151|ref|YP_002044841.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194471467|ref|ZP_03077451.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194734200|ref|YP_002113904.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|197251468|ref|YP_002145768.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197363010|ref|YP_002142647.1| hypothetical protein SSPA1809 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198243219|ref|YP_002214776.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|200390368|ref|ZP_03216979.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204929865|ref|ZP_03220886.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205352071|ref|YP_002225872.1| hypothetical protein SG0792 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207856250|ref|YP_002242901.1| hypothetical protein SEN0759 [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|238913372|ref|ZP_04657209.1| hypothetical protein SentesTe_19906 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|16419319|gb|AAL19750.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|56128344|gb|AAV77850.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62127013|gb|AAX64716.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161364313|gb|ABX68081.1| hypothetical protein SPAB_02703 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402042|gb|ACF62264.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194408455|gb|ACF68674.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194457831|gb|EDX46670.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194709702|gb|ACF88923.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|195630975|gb|EDX49561.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197094487|emb|CAR60004.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197215171|gb|ACH52568.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
gi|197290109|gb|EDY29466.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197937735|gb|ACH75068.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199602813|gb|EDZ01359.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204320859|gb|EDZ06060.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205271852|emb|CAR36687.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205324628|gb|EDZ12467.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205329612|gb|EDZ16376.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205334664|gb|EDZ21428.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|205339836|gb|EDZ26600.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205343080|gb|EDZ29844.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205347702|gb|EDZ34333.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|206708053|emb|CAR32344.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|261246071|emb|CBG23873.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267992555|gb|ACY87440.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301157398|emb|CBW16887.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312911837|dbj|BAJ35811.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Typhimurium str.
T000240]
gi|320085086|emb|CBY94873.1| Uncharacterized protein ybhP [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|321226386|gb|EFX51437.1| Endonuclease/Exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|322616289|gb|EFY13198.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
315996572]
gi|322619539|gb|EFY16414.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-1]
gi|322622765|gb|EFY19610.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-3]
gi|322628677|gb|EFY25464.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
495297-4]
gi|322631615|gb|EFY28371.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-1]
gi|322637141|gb|EFY33844.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
515920-2]
gi|322641659|gb|EFY38295.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 531954]
gi|322644546|gb|EFY41086.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648478|gb|EFY44930.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
OH_2009072675]
gi|322654215|gb|EFY50538.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658130|gb|EFY54397.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 19N]
gi|322663604|gb|EFY59806.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
81038-01]
gi|322670340|gb|EFY66480.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MD_MDA09249507]
gi|322671576|gb|EFY67698.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 414877]
gi|322676932|gb|EFY72999.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 366867]
gi|322682857|gb|EFY78876.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 413180]
gi|322686536|gb|EFY82518.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 446600]
gi|322713851|gb|EFZ05422.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
gi|323129120|gb|ADX16550.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323194567|gb|EFZ79760.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
609458-1]
gi|323199102|gb|EFZ84198.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
556150-1]
gi|323202057|gb|EFZ87116.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str. 609460]
gi|323208917|gb|EFZ93854.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
507440-20]
gi|323215246|gb|EFZ99991.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB101509-0077]
gi|323220835|gb|EGA05273.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB102109-0047]
gi|323227306|gb|EGA11474.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB110209-0055]
gi|323229924|gb|EGA14047.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
MB111609-0052]
gi|323233149|gb|EGA17245.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009083312]
gi|323240884|gb|EGA24926.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
2009085258]
gi|323243201|gb|EGA27221.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
315731156]
gi|323248740|gb|EGA32668.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2009159199]
gi|323251744|gb|EGA35611.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008282]
gi|323258764|gb|EGA42421.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008283]
gi|323260691|gb|EGA44296.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008284]
gi|323267872|gb|EGA51351.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008285]
gi|323268742|gb|EGA52202.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Montevideo str.
IA_2010008287]
gi|326622531|gb|EGE28876.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|326627113|gb|EGE33456.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|332987744|gb|AEF06727.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 252
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 18/119 (15%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L W + + P ++AGDFN ++ GL +E
Sbjct: 150 RQAQLTMLAGWVNA-LPESEPVLVAGDFNDW------RQKAGPPLNAAGL-------EEI 195
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + + N+ S + LS H PL+ E
Sbjct: 196 FTRAHGRPARTFPVSMPLLRLDRIYVKNA--NASSPTALPLRNWRHLSDHAPLSAEIHL 252
>gi|330806705|ref|YP_004351167.1| endonuclease/exonuclease/phosphatase [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|253559456|gb|ACT32417.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
fluorescens]
gi|327374813|gb|AEA66163.1| Putative endonuclease/exonuclease/phosphatase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 292
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 22/111 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + I V+ GD N Q L + PQ + + + +
Sbjct: 184 AYIRELIGGYKHQVLMGDMNTHATD------LLQTSPLRDLGLLAPQLEATFPSWRPQR- 236
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ L+ + ++ + +S H P+ +E
Sbjct: 237 ----------CLDHILLSPTLTLERVEVLAQP-----ISDHLPVAVEIRLP 272
>gi|117618538|ref|YP_855175.1| endonuclease/exonuclease/phosphatase family protein [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|117559945|gb|ABK36893.1| endonuclease/exonuclease/phosphatase family [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 371
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 30/125 (24%), Gaps = 12/125 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q L I + GDFN D ++ D E
Sbjct: 248 QIRTLAASLK--IPASDTVIYGGDFNVNKRKFADDYAGMLANLNADEPGYGGYTEATFDP 305
Query: 64 NVIKRNKS---------SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ LDY V R+ + + + S LS H P+
Sbjct: 306 RINPYAGGPLSGGANVEYLDYLVASREYGAVCHNLNSVWIPRSSDGSLWPASNLSDHFPV 365
Query: 115 TIEYD 119
E
Sbjct: 366 KGEIS 370
>gi|145592926|ref|YP_001157223.1| endonuclease/exonuclease/phosphatase [Salinispora tropica CNB-440]
gi|145302263|gb|ABP52845.1| Endonuclease/exonuclease/phosphatase [Salinispora tropica CNB-440]
Length = 1091
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 12/117 (10%), Positives = 23/117 (19%), Gaps = 15/117 (12%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQ-------------KMDPDGLLIRFPQEKESTCN 64
V GD N + + +
Sbjct: 863 DPDARVVFGGDLNVFPRPDDPIATAADPTPSDQLGPLYEVGLHNLWDDLLADAPSSAYSY 922
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR--SKLSTHCPLTIEYD 119
+LD+ + + L+ + V+ D S H P +
Sbjct: 923 SFAGQAQTLDHLFVTEALHDDLVQMRAAHVNADWPAEYAGDGSRGASDHDPQVARFR 979
>gi|194466723|ref|ZP_03072710.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
gi|194453759|gb|EDX42656.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
Length = 253
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 25/131 (19%)
Query: 7 EWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------M 46
+W + + D +++ P +I GD + I +
Sbjct: 121 DWDRAFLDYVTNLQSSKPVIIGGDMSVAYQPIDLAEPTEDHHKAGFTKQERSDFGKLLDA 180
Query: 47 DPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ R + FL+ + + + L
Sbjct: 181 GLTDTFRYLHPNLHGAYTWWSYRYDARERNVGW--RLDYFLVSDVWKERIEEAKILS--D 236
Query: 106 SKLSTHCPLTI 116
K S+HCP+ +
Sbjct: 237 VKGSSHCPIEL 247
>gi|301618077|ref|XP_002938453.1| PREDICTED: procollagen-lysine,2-oxoglutarate 5-dioxygenase 2-like
[Xenopus (Silurana) tropicalis]
Length = 1185
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 40/128 (31%), Gaps = 12/128 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAG-DFNRKINSIGDTDDFWQKMDPDGLL---IRFPQEKE 60
Q +++K++ +I G D N +N + D+ + L F + +
Sbjct: 126 QAQFIKQFLKILDNFKEGLIIMGGDLNLVLNPVTDSSSGKSNISHKTLREVKKLFSEMQL 185
Query: 61 STCN-----VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
V K ++ ++ ++ + S LS H P+
Sbjct: 186 IDAWRTQNPVKKDYTHFSKTHMVYSRIDYIMVSQNWLHLFTQ---AKIGNSTLSDHSPIF 242
Query: 116 IEYDFEKG 123
++ K
Sbjct: 243 AKFVIPKT 250
>gi|229101435|ref|ZP_04232178.1| Sphingomyelinase C [Bacillus cereus Rock3-28]
gi|228682011|gb|EEL36145.1| Sphingomyelinase C [Bacillus cereus Rock3-28]
Length = 333
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 33/138 (23%), Gaps = 21/138 (15%)
Query: 4 QQGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIR 54
+Q + ++ + + I +I GD N NS + ++ +
Sbjct: 197 KQLQEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHT 256
Query: 55 FPQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + +S D+ L S T
Sbjct: 257 ATWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSHIENKVLQPKSPQWTVTSWFKKYT 316
Query: 104 RRSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 317 YNDY-SDHYPVEATISMK 333
>gi|217927085|gb|ACK57212.1| CG12034-like protein [Drosophila affinis]
Length = 321
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 12/122 (9%), Positives = 32/122 (26%), Gaps = 6/122 (4%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--QKMDPDGLLIRFPQEKEST 62
Q ++ + + ++AGD N + I + + +D E +
Sbjct: 89 QAFDTAQFIEATRGNSVLQILAGDLNAQPQDISYKVLLYTSKMLDSCASDTFRTNECDHN 148
Query: 63 CNVI----KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+N + I + + + ++ S H + +
Sbjct: 149 SYTSAKALSKNPRGIRIDHIFVRGGDNINAEIVEYTLPLPDRVPGQKFSFSDHEAVLAKL 208
Query: 119 DF 120
Sbjct: 209 KL 210
>gi|218260769|ref|ZP_03475911.1| hypothetical protein PRABACTJOHN_01575 [Parabacteroides johnsonii
DSM 18315]
gi|218224372|gb|EEC97022.1| hypothetical protein PRABACTJOHN_01575 [Parabacteroides johnsonii
DSM 18315]
Length = 353
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 23/115 (20%), Gaps = 19/115 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + +A+ + P ++ GDFN S GL F
Sbjct: 253 KRAIQADSIYAEIRRSP-YPVIVCGDFNDTPASYTYHRV------RKGLTDGFQDAGNGY 305
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
S D+ S H +
Sbjct: 306 QYTF-------RQLYRLWRIDYVFYSESLKGQDCFSPDVSY-----SDHNMVVWR 348
>gi|94309326|ref|YP_582536.1| endonuclease/exonuclease/phosphatase [Cupriavidus metallidurans
CH34]
gi|93353178|gb|ABF07267.1| Putative endonuclease/exonuclease/phosphatase protein [Cupriavidus
metallidurans CH34]
Length = 251
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 15/115 (13%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + + P VIAGDFN + + L ++
Sbjct: 143 RQTTALVERVRSVVPADAPLVIAGDFND-------WNHKLDSKICNTLNAVESANAKNG- 194
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + + + ++ + F +R S H PL E
Sbjct: 195 ----RIHTFPSHMPWWQLDRIYARGFEFERTQALTGREWAQR---SDHVPLMAEL 242
>gi|326385544|ref|ZP_08207178.1| hypothetical protein Y88_1742 [Novosphingobium nitrogenifigens DSM
19370]
gi|326209878|gb|EGD60661.1| hypothetical protein Y88_1742 [Novosphingobium nitrogenifigens DSM
19370]
Length = 240
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 22/116 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L ++ +V GDFN S Q P + +
Sbjct: 147 QMQQLHA-VADMLRKNPAWVAMGDFNCAAASAP-----MQAFRDRAHGKLPPTSPPTYPS 200
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R D + + S+ Y +S H P++
Sbjct: 201 WRPRR-----------DFDHIICSADLSLTRYAAGTAI-----VSDHRPVSAHLAL 240
>gi|323443048|gb|EGB00669.1| beta-hemolysin [Staphylococcus aureus O46]
Length = 331
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 200 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 259
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 260 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 319
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 320 FSDHYPIKA 328
>gi|282880228|ref|ZP_06288945.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
timonensis CRIS 5C-B1]
gi|281305888|gb|EFA97931.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
timonensis CRIS 5C-B1]
Length = 316
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 15/122 (12%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
Q + T ++ GDFN + + + ++ + SLD
Sbjct: 196 QSVSTRPRILVMGDFNDYSSDKNILRLVQSGLVEVSANAKGTHGAKA-TYRFRGEWGSLD 254
Query: 75 YFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKL-------------STHCPLTIEYDF 120
+ +D+ + + + + + D K S H PL + ++
Sbjct: 255 HIFLDKSSAALVQECYVHDAPFLLEKDEKYGGVKPRRNYQGPRYLNGFSDHLPLVMRINW 314
Query: 121 EK 122
+K
Sbjct: 315 QK 316
>gi|224582626|ref|YP_002636424.1| hypothetical protein SPC_0810 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224467153|gb|ACN44983.1| hypothetical protein SPC_0810 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 252
Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 18/119 (15%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L W + + P ++AGDFN ++ GL +E
Sbjct: 150 RQAQLTMLAGWVNA-LPESEPVLVAGDFNDW------RQKAGPPLNAAGL-------EEI 195
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + + N+ S + LS H PL+ E
Sbjct: 196 FTRAHGRPARTFPVSMPLLRLDRIYVKNA--NASSPTALPLRNWRHLSDHAPLSAEIHL 252
>gi|333025252|ref|ZP_08453316.1| putative ATP/GTP-binding protein [Streptomyces sp. Tu6071]
gi|332745104|gb|EGJ75545.1| putative ATP/GTP-binding protein [Streptomyces sp. Tu6071]
Length = 627
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 11/116 (9%), Positives = 28/116 (24%), Gaps = 2/116 (1%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + ++ + + V+ GDFNR + + +
Sbjct: 247 QIQAVRAFVAEFGTAHGTARTVLGGDFNRAAADATMKPLTSAYENCVSGATHHGWDNAAK 306
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + S + + + + S H P+
Sbjct: 307 AHRRHEFDHLFVTRPAEGSAFSSCSVESALMDTTENEADSGDPNGFSDHAPVVGRL 362
>gi|298368758|ref|ZP_06980076.1| endonuclease/exonuclease/phosphatase family protein [Neisseria sp.
oral taxon 014 str. F0314]
gi|298282761|gb|EFI24248.1| endonuclease/exonuclease/phosphatase family protein [Neisseria sp.
oral taxon 014 str. F0314]
Length = 256
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 39/115 (33%), Gaps = 14/115 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q + ++ + P +IAGDFN + ++ D + + + T
Sbjct: 147 AKQYRAIFEYVSMHVDPASPLIIAGDFNDWREKSAL--SLGKALNLDEVFVDGNGRRPKT 204
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + + + ++ + LS H PL+++
Sbjct: 205 -----------FPSRMPFLSLDRVYTRNLEVLDAQIHNNKH-WQHLSDHLPLSVK 247
>gi|242035591|ref|XP_002465190.1| hypothetical protein SORBIDRAFT_01g033680 [Sorghum bicolor]
gi|241919044|gb|EER92188.1| hypothetical protein SORBIDRAFT_01g033680 [Sorghum bicolor]
Length = 684
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 15/119 (12%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------FWQKMDPDGLLIRFPQE 58
++L + K +P +I GDFN N +D + + L
Sbjct: 412 KFLTELVQACRKESLPLLIGGDFNIIRNPSEKNNDKFDSRWPFLFNAIIDGLDLREIEMS 471
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
++ L+ + + +D ++S H PL +
Sbjct: 472 GRKFTW------ANSKSVPTYERLDRVLVSTEWEQK-FPLVTVDALNREISDHTPLLLS 523
>gi|326794591|ref|YP_004312411.1| endonuclease/exonuclease/phosphatase [Marinomonas mediterranea
MMB-1]
gi|326545355|gb|ADZ90575.1| Endonuclease/exonuclease/phosphatase [Marinomonas mediterranea
MMB-1]
Length = 847
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 18/163 (11%), Positives = 38/163 (23%), Gaps = 46/163 (28%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR----------- 54
L + ++ ++ +I GD N +
Sbjct: 651 AVALGDYLERNVRGK--VMILGDLNSYGKEDPIRVLTDYNAFDPEFPVYTAEQATLNGAP 708
Query: 55 --------------------FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV 94
Q E+ SLD+ + + ++D +
Sbjct: 709 INDGESVEVTRNYGFTNLVPHFQGDEAFSYTFNGELGSLDHALANWQLMKHVVDADDWHI 768
Query: 95 SYDQSDLDTR-------------RSKLSTHCPLTIEYDFEKGN 124
+ +S+L S H P+ +E + N
Sbjct: 769 NSAESNLFEYSSEFTGDLVKSDNAYSSSDHDPVVVELKMRRWN 811
>gi|319780945|ref|YP_004140421.1| endonuclease/exonuclease/phosphatase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166833|gb|ADV10371.1| Endonuclease/exonuclease/phosphatase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 289
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 24/117 (20%), Gaps = 20/117 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTD-----------DFWQKMDPDGLLIRFPQEKESTC 63
++ FV GDFN S + D L +
Sbjct: 179 PELPHPEAFVGMGDFNMLAGSPEYVELAGRPDHEFGMPLTADFAVDAALRLNATGDDLIS 238
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLSTHCPLTIEY 118
V + + S + S H P+ +E
Sbjct: 239 WVDPKQP---TDPSRHKRIDYIFTSASLARSLQRLWVDRKAVG----SDHLPVWVEL 288
>gi|229095326|ref|ZP_04226318.1| Sphingomyelinase C [Bacillus cereus Rock3-29]
gi|229114275|ref|ZP_04243696.1| Sphingomyelinase C [Bacillus cereus Rock1-3]
gi|228669295|gb|EEL24716.1| Sphingomyelinase C [Bacillus cereus Rock1-3]
gi|228688185|gb|EEL42071.1| Sphingomyelinase C [Bacillus cereus Rock3-29]
Length = 333
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 21/138 (15%)
Query: 4 QQGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIR 54
+Q + ++++ + I +I GD N NS + ++ +
Sbjct: 197 KQLQEIQEFIKNKNIPNNEYVLIGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHT 256
Query: 55 FPQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + +S D+ L S T
Sbjct: 257 ATWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSHIENKVLQPKSPQWTVTSWFKKYT 316
Query: 104 RRSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 317 YNDY-SDHYPVEATISMK 333
>gi|255573200|ref|XP_002527529.1| conserved hypothetical protein [Ricinus communis]
gi|223533079|gb|EEF34838.1| conserved hypothetical protein [Ricinus communis]
Length = 216
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 4/104 (3%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE----STCNVIKRNKSSLD 74
P+++ GDFN +N Q R + + +
Sbjct: 27 NDSPWIVMGDFNDILNHREKRGGVAQPNWLVEGFRRAVWDSGLVDLGFQGCPFTWERGRE 86
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ ++ N ++ N + + + + S +S H P+ +
Sbjct: 87 SGLWVQERLNRMLGNGDWVARHKDARVVHLDSVVSDHFPIILHL 130
>gi|119605749|gb|EAW85343.1| deoxyribonuclease I, isoform CRA_a [Homo sapiens]
Length = 212
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 39/116 (33%), Gaps = 5/116 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D + K G ++ GDFN + + + ++ + +
Sbjct: 95 EIDALYDVYLDVQEKWGLEDVMLMGDFNAGCSYVRPSQWSSIRLWTSPTFQWLIPDS-AD 153
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTI 116
+ + V + ++ +S ++ + + +S H P+ +
Sbjct: 154 TTATPTHCAYDRIVVAGMLLRGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEV 209
>gi|330508142|ref|YP_004384570.1| endonuclease/exonuclease/phosphatase family [Methanosaeta concilii
GP-6]
gi|328928950|gb|AEB68752.1| endonuclease/exonuclease/phosphatase family [Methanosaeta concilii
GP-6]
Length = 355
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 37/140 (26%), Gaps = 16/140 (11%)
Query: 2 LSQQGEWLKKWA--DQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP- 56
+ + G+ L+ D + GDFN + + + + + +
Sbjct: 192 MKRIGQALETRILIDNLFDDNRCALIAVCGDFNEEFDEVSIEAIRGDVENTGNMDLAMRV 251
Query: 57 --------QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI---VSYDQSDLDTRR 105
E + LD+ ++ R F +
Sbjct: 252 MVPTERNIPEPARYSLLHNGKGKMLDHILVSRTMLAFFKGSEVHNELLHDESIVFAPKIF 311
Query: 106 SKLSTHCPLTIEYDFEKGNV 125
S H P+ ++ + ++
Sbjct: 312 YPESDHAPVIARFELPESDI 331
>gi|297208971|ref|ZP_06925374.1| Sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|46591|emb|CAA43885.1| Sphingomyelinase [Staphylococcus aureus]
gi|619317|gb|AAB32218.1| beta-hemolysin [Staphylococcus aureus]
gi|296886361|gb|EFH25291.1| Sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|323439885|gb|EGA97601.1| beta-hemolysin [Staphylococcus aureus O11]
Length = 331
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 200 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 259
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 260 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 319
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 320 FSDHYPIKA 328
>gi|317407170|gb|EFV87163.1| endonuclease/exonuclease/phosphatase [Achromobacter xylosoxidans
C54]
Length = 251
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 15/118 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ L + + + G +IAGDFN + D + +E
Sbjct: 149 EQQIASLCRLVARDVPAGASLLIAGDFND-------WRLKADHLLRD------CRVQEVF 195
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + R + + + S+LS H P+ E
Sbjct: 196 TSRLGRPARTFPARWPLLRLDRIYVR-NVRGWR-PVPLASRVWSRLSDHVPIAAEISL 251
>gi|304392145|ref|ZP_07374087.1| endonuclease/exonuclease/phosphatase [Ahrensia sp. R2A130]
gi|303296374|gb|EFL90732.1| endonuclease/exonuclease/phosphatase [Ahrensia sp. R2A130]
Length = 380
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 30/121 (24%), Gaps = 12/121 (9%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV----I 66
W ++ P + G F + DD W +G +E
Sbjct: 260 DWIAEETHGSAPLLDDG-FAINLVDRRAQDDRWTLFYANGKSASARLPQERPTRHLVQLD 318
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-------DLDTRRSKLSTHCPLTIEYD 119
S + + + + + R K S HCP+ + D
Sbjct: 319 YLLASPRLAKGNAKAVPDIIRNGQPYRTVFPPDQEVERYPRTGWDRPKASDHCPVVVSLD 378
Query: 120 F 120
Sbjct: 379 M 379
>gi|55822181|ref|YP_140622.1| hypothetical protein str0193 [Streptococcus thermophilus CNRZ1066]
gi|55738166|gb|AAV61807.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
Length = 290
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 5/109 (4%)
Query: 5 QGEWLKKWADQKIKT-GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q EW +++ ++ G P ++AGDFN G + + S
Sbjct: 178 QEEW--ARIEERFQSIGKPLILAGDFNNPAGREGYQTILASPLKLQDSFQVAQKTNGSYT 235
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
V +++ +S +S H
Sbjct: 236 -VGPGIDGWKGNE-EPLRIDYVFASQEWAVNRLSVIFDGNNQSLVSDHY 282
>gi|34392566|dbj|BAC82613.1| pol-like protein [Danio rerio]
Length = 1284
Score = 39.8 bits (91), Expect = 0.11, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 18/123 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINS----------IGDTDDFWQKMDPDGLLIRFPQE 58
L+ + + +I GDFN + + + + LI +E
Sbjct: 142 LRDYLKKH----ERVIIMGDFNTVFSKLEMAEGMVFKTDKGRKELKILMEEMNLIDVWRE 197
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ R + + F L + +T LS H PL ++
Sbjct: 198 RNEQTKEYSRRQ-IVGNFCCQTRIDFILCTRNVEGFINKIKYEETS---LSDHKPLFMKL 253
Query: 119 DFE 121
D+
Sbjct: 254 DWS 256
>gi|153839526|ref|ZP_01992193.1| nuclease [Vibrio parahaemolyticus AQ3810]
gi|149746952|gb|EDM57940.1| nuclease [Vibrio parahaemolyticus AQ3810]
Length = 632
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 37/130 (28%), Gaps = 15/130 (11%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L ++ +K G AG + ++ L ++
Sbjct: 371 LTDYSKEKY--GRDIYTAGYTTINGGELQVEQTQIKQGYGLNNLNTLLHGTDTFSYTYSG 428
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LSTHCPLT 115
+LD+ + ++ ++ +S+L SK S H P+
Sbjct: 429 ELGNLDHALASNSLAQKVVAIEDWHINSLESNLFEYGSKYTGDMPKYKDAFSASDHDPVI 488
Query: 116 IEYDFEKGNV 125
I D ++
Sbjct: 489 IAIDLPDTDI 498
>gi|90420840|ref|ZP_01228745.1| possible endonuclease/exonuclease [Aurantimonas manganoxydans
SI85-9A1]
gi|90334815|gb|EAS48587.1| possible endonuclease/exonuclease [Aurantimonas manganoxydans
SI85-9A1]
Length = 347
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 23/114 (20%), Gaps = 13/114 (11%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
L + P +IAGDFN S +
Sbjct: 231 RQLADLQETLGLLRGPVLIAGDFNAAPWSAALETYAAASGT--------TPVTGIGFTWL 282
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R I + L L T S H P+ +
Sbjct: 283 SRALPGALAPYIGLPIDHVLATPGI-----VIRKLGTLAPTASDHMPIAATFSL 331
>gi|256395293|ref|YP_003116857.1| endonuclease/exonuclease/phosphatase [Catenulispora acidiphila DSM
44928]
gi|256361519|gb|ACU75016.1| Endonuclease/exonuclease/phosphatase [Catenulispora acidiphila DSM
44928]
Length = 252
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 31/122 (25%), Gaps = 22/122 (18%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L++ + ++ +I +G P + GDFN +S ++ L +
Sbjct: 147 LARMAQAIR-----RIDSGEPVIAVGDFNVPRDS-----WLFEGFQAASGLRDAFDGDAA 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR-----RSKLSTHCPLTI 116
T L+ + R LS H +
Sbjct: 197 TTF-------RPVPGWDGAALDQILVSPGVPAKAEVVMQEKVRMGDGQDRYLSDHYGVAA 249
Query: 117 EY 118
Sbjct: 250 TI 251
>gi|20161480|dbj|BAB90404.1| putative inositol-1, 4, 5-trisphosphate 5-phosphatase [Oryza sativa
Japonica Group]
gi|222619441|gb|EEE55573.1| hypothetical protein OsJ_03851 [Oryza sativa Japonica Group]
Length = 501
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 14/140 (10%), Positives = 28/140 (20%), Gaps = 22/140 (15%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDP---------- 48
+ S+ + +KI + GD N ++ + +
Sbjct: 317 LFSRICRRGVRKIPEKILEHDKVIWFGDLNYRIALSYADTKNFLMENNWDVLFERDQLKI 376
Query: 49 ----------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
F S R + + Q
Sbjct: 377 ERDAGRVFKGWNEGKIFFAPTYKYSYNSDAYASETATSNKKRRTPAWCDRILWRGDGILQ 436
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
S+ S H P+ +
Sbjct: 437 LSYYRGESRFSDHRPVCGTF 456
>gi|300715934|ref|YP_003740737.1| conserved uncharacterized protein YbhP [Erwinia billingiae Eb661]
gi|299061770|emb|CAX58886.1| conserved uncharacterized protein YbhP [Erwinia billingiae Eb661]
Length = 253
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 15/116 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L + + + P V+AGDFN + G + ++
Sbjct: 153 QLKLLCELVNS-LPADAPVVVAGDFND-------WQQKANAVLKKGAALEEVFSRKFG-- 202
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ +S+ Q+ S LS H PL +E
Sbjct: 203 ---RPARTFPARFPLLRLDRIYVRNA--GISHPQTIPLRPWSHLSDHAPLAVEIHL 253
>gi|300707896|ref|XP_002996140.1| hypothetical protein NCER_100801 [Nosema ceranae BRL01]
gi|239605413|gb|EEQ82469.1| hypothetical protein NCER_100801 [Nosema ceranae BRL01]
Length = 414
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 18/77 (23%), Gaps = 4/77 (5%)
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
++ F E + D I I+ D
Sbjct: 320 ELSHIDAFRLFHTGYEKYTCWNIQLNLRPRNLGSRIDYILIPIKFYNRIMFSDI----EN 375
Query: 105 RSKLSTHCPLTIEYDFE 121
S HCP+ + + E
Sbjct: 376 HVYGSDHCPVYVNLNLE 392
>gi|218262794|ref|ZP_03477152.1| hypothetical protein PRABACTJOHN_02832 [Parabacteroides johnsonii
DSM 18315]
gi|218223126|gb|EEC95776.1| hypothetical protein PRABACTJOHN_02832 [Parabacteroides johnsonii
DSM 18315]
Length = 279
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 22/105 (20%), Gaps = 17/105 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
PF IAGD N +S + + +
Sbjct: 170 ASANKPFFIAGDMNAHPDSEFIRQLKNDFVILTDMEKPTFPADKPD-------------- 215
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ S L S H P+ + F
Sbjct: 216 ---ETLDYIAAYAKDTVAFTRISSLVWEEPAASDHRPILTDIIFN 257
>gi|326777965|ref|ZP_08237230.1| Endonuclease/exonuclease/phosphatase [Streptomyces cf. griseus
XylebKG-1]
gi|326658298|gb|EGE43144.1| Endonuclease/exonuclease/phosphatase [Streptomyces cf. griseus
XylebKG-1]
Length = 295
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 10/103 (9%), Positives = 24/103 (23%), Gaps = 18/103 (17%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ P ++ GDFN + ++ W+++ +
Sbjct: 204 AEDRGPKILLGDFNAEPSAPEL-APLWRELADADPGAPTFPAQ----------------- 245
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S S H P+ +
Sbjct: 246 DPVKRIDFVAVSRGGPGTGITVRKAWVPESVASDHRPVVADLS 288
>gi|296271351|ref|YP_003653983.1| endonuclease/exonuclease/phosphatase [Thermobispora bispora DSM
43833]
gi|296094138|gb|ADG90090.1| Endonuclease/exonuclease/phosphatase [Thermobispora bispora DSM
43833]
Length = 378
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 12/115 (10%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + G P ++ GDFNRK + + +
Sbjct: 272 RQVAELV----AEYAAGDPVILTGDFNRKPGDRELSCLYGMGLGEGEYTEVDAAPDGV-- 325
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + + + F ++ F + + LS H PLT
Sbjct: 326 ---PRRGGAPTTRGGRKIDYIFATEDDFLPDGAEVISVKPE---LSDHRPLTGTL 374
>gi|283471236|emb|CAQ50447.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus ST398]
Length = 330
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 199 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 258
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 259 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 318
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 319 FSDHYPIKA 327
>gi|258445359|ref|ZP_05693550.1| sphingomyelinase [Staphylococcus aureus A6300]
gi|257855877|gb|EEV78801.1| sphingomyelinase [Staphylococcus aureus A6300]
Length = 330
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 199 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 258
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 259 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 318
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 319 FSDHYPIKA 327
>gi|152002409|gb|ABS19574.1| beta-hemolysin [Staphylococcus aureus]
Length = 330
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 199 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 258
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 259 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 318
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 319 FSDHYPIKA 327
>gi|149706121|ref|XP_001501241.1| PREDICTED: similar to endonuclease/exonuclease/phosphatase family
domain containing 1 [Equus caballus]
Length = 569
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 10/111 (9%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ +K ++ GDF + +S + + P + + S
Sbjct: 433 LQETLKGEKDVIVLGDFGQGPDSSDY-----DILRKEKFHHLIPAHTFTNISTKNPQGSR 487
Query: 73 LDYFVIDRDNKNFLIDNSFSIVS-----YDQSDLDTRRSKLSTHCPLTIEY 118
+ + + +++V D + S HCP+ E+
Sbjct: 488 SLDNIWISRSLKKIFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEF 538
>gi|187922391|ref|YP_001894033.1| endonuclease/exonuclease/phosphatase [Burkholderia phytofirmans
PsJN]
gi|187713585|gb|ACD14809.1| Endonuclease/exonuclease/phosphatase [Burkholderia phytofirmans
PsJN]
Length = 265
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 18/116 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ G P V+AGDFN N + + + + +
Sbjct: 166 RQMNWIAHWIAKEAPEG-PLVLAGDFNDWRNDSV---PLFGEHGLQEVATLLGESGRTFP 221
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + LS H P
Sbjct: 222 AFSPALALDKMFVRGMKPIEWIQPTQE--------------TAWLSDHLPYMARLR 263
>gi|82751595|ref|YP_417336.1| beta-hemolysin [Staphylococcus aureus RF122]
gi|82657126|emb|CAI81563.1| beta-hemolysin [Staphylococcus aureus RF122]
Length = 330
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 199 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 258
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 259 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 318
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 319 FSDHYPIKA 327
>gi|57650692|ref|YP_186826.1| phospholipase C [Staphylococcus aureus subsp. aureus COL]
gi|282894608|ref|ZP_06302836.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A8117]
gi|130085|sp|P09978|PHLC_STAAU RecName: Full=Phospholipase C; AltName: Full=Beta-hemolysin;
AltName: Full=Beta-toxin; AltName:
Full=Sphingomyelinase; Short=SMase; Flags: Precursor
gi|61213889|sp|Q5HEI1|PHLC_STAAC RecName: Full=Phospholipase C; AltName: Full=Beta-hemolysin;
AltName: Full=Beta-toxin; AltName:
Full=Sphingomyelinase; Short=SMase; Flags: Precursor
gi|110815915|sp|Q2FWP1|PHLC_STAA8 RecName: Full=Phospholipase C; AltName: Full=Beta-hemolysin;
AltName: Full=Beta-toxin; AltName:
Full=Sphingomyelinase; Short=SMase; Flags: Precursor
gi|46588|emb|CAA31769.1| unnamed protein product [Staphylococcus aureus subsp. aureus COL]
gi|57284878|gb|AAW36972.1| phospholipase C [Staphylococcus aureus subsp. aureus COL]
gi|269941409|emb|CBI49806.1| phospholipase C precursor (pseudogene) [Staphylococcus aureus
subsp. aureus TW20]
gi|282763095|gb|EFC03227.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A8117]
gi|298695279|gb|ADI98501.1| beta-hemolysin [Staphylococcus aureus subsp. aureus ED133]
gi|329731457|gb|EGG67820.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus 21193]
Length = 330
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 199 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 258
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 259 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 318
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 319 FSDHYPIKA 327
>gi|291616378|ref|YP_003519120.1| YafD [Pantoea ananatis LMG 20103]
gi|291151408|gb|ADD75992.1| YafD [Pantoea ananatis LMG 20103]
Length = 239
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q + P ++AGDFN Q+++ Q +E R K+
Sbjct: 152 EQIVHHRGPVIMAGDFNA---------WSRQRINALYRFAHQMQLEEVMFTADHRRKAFG 202
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E++
Sbjct: 203 RPLDFVFYRDMHVSEASVLVT------------RASDHNPLLVEFN 236
>gi|258564578|ref|XP_002583034.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237908541|gb|EEP82942.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1157
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 14/106 (13%), Positives = 27/106 (25%), Gaps = 13/106 (12%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
++ I + GD N ++ D N S
Sbjct: 787 NRTINDHDAVIWLGDLN------------YRVELNDDEYYSEGPITFPPTY-RYNNGSDS 833
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R + + Q + +T K+S H P+ ++
Sbjct: 834 YDTSEKRRIPAWCDRILWKGECLHQLEYNTAPLKMSDHRPVYAVFE 879
>gi|242209337|ref|XP_002470516.1| predicted protein [Postia placenta Mad-698-R]
gi|220730426|gb|EED84283.1| predicted protein [Postia placenta Mad-698-R]
Length = 1315
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 11/112 (9%), Positives = 30/112 (26%), Gaps = 10/112 (8%)
Query: 11 KWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+ D + + GD N + + + + P + V +
Sbjct: 1181 AFVDTLLAHDANASIIAGGDMNEFLQTRSVFAALQDLLRDINEIAGVPPAE-RYTYVYDQ 1239
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP----LTI 116
+ +D+ + + + + T + S H P + +
Sbjct: 1240 HAQEIDHIFVSPAIAAR---GADVEHVHMNTWAQTMGERASDHDPSVARVWV 1288
>gi|159036097|ref|YP_001535350.1| endonuclease/exonuclease/phosphatase [Salinispora arenicola
CNS-205]
gi|157914932|gb|ABV96359.1| Endonuclease/exonuclease/phosphatase [Salinispora arenicola
CNS-205]
Length = 1092
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 12/134 (8%), Positives = 27/134 (20%), Gaps = 17/134 (12%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQ-------------KMD 47
+Q + + V GD N +
Sbjct: 847 REQAAYGAAIVSAIEASDPDARVVFGGDLNVFPRPDDPIATAADPTPSDQLGPLYEAGLR 906
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-- 105
+ + +LD+ + + L+ + ++ D
Sbjct: 907 NLWDDLLAAAPSSAYSYSYAGQAQTLDHLFVTEALHDDLVQMRAAHINADWPAEYAGDGS 966
Query: 106 SKLSTHCPLTIEYD 119
S H P +
Sbjct: 967 RGSSDHDPQVARFR 980
>gi|256090614|ref|XP_002581279.1| nocturnin [Schistosoma mansoni]
gi|238667142|emb|CAZ37518.1| nocturnin, putative [Schistosoma mansoni]
Length = 338
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 22/149 (14%), Positives = 39/149 (26%), Gaps = 29/149 (19%)
Query: 1 MLSQQGEWLKKWADQKIKT------------GIPFVIAGDFNRKINSI--------GDTD 40
+ +QGE L K+ + IK P I GDFN +
Sbjct: 186 IRRKQGEELVKYLNSFIKRISSTSAPLNSTVFPPIFICGDFNAEPTEPVINILQNFSLNS 245
Query: 41 DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN------SFSIV 94
+ K+ +E E T I+++K ++ + +
Sbjct: 246 NTLYKLTSAYYTAGGCKEPEFTTWKIRKSKRIVELTEDCHTIDYIWYCDRLCTLLGVWSI 305
Query: 95 SYDQSDLDTR---RSKLSTHCPLTIEYDF 120
S H L ++
Sbjct: 306 PSKNEIGPNGLPSAIFPSDHMNLIADFSL 334
>gi|284039823|ref|YP_003389753.1| endonuclease/exonuclease/phosphatase [Spirosoma linguale DSM 74]
gi|283819116|gb|ADB40954.1| Endonuclease/exonuclease/phosphatase [Spirosoma linguale DSM 74]
Length = 266
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 18/109 (16%), Positives = 27/109 (24%), Gaps = 19/109 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
T +P ++AGDFN + +S Q D +
Sbjct: 177 IRHFGATDLPVILAGDFNAQTDSKVI-----QLFDQTFVRSCQSCAPTIP---------- 221
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ D S S D S H P+ +E
Sbjct: 222 VKNPNRAIDFVMVKQGGSLKSTSTRVVDEQ----YASDHLPVVVELKLN 266
>gi|170690563|ref|ZP_02881730.1| Endonuclease/exonuclease/phosphatase [Burkholderia graminis C4D1M]
gi|170144998|gb|EDT13159.1| Endonuclease/exonuclease/phosphatase [Burkholderia graminis C4D1M]
Length = 258
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 28/113 (24%), Gaps = 22/113 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + +P ++ GD N + + + P+ S
Sbjct: 165 QVRLL---LEAFDTPDLPVILLGDLNEWF----VWGWPLRALLTRFGRVAAPRTFPS--- 214
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
R + + + +V + R S H PL
Sbjct: 215 ---RFPAFA--------LDRVWVHPAARLVDIEVDRSRPARI-ASDHLPLVAR 255
>gi|149237150|ref|XP_001524452.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451987|gb|EDK46243.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 440
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 15/142 (10%), Positives = 27/142 (19%), Gaps = 40/142 (28%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI---RFPQEKESTCNVIKRNKSSLDYFVI 78
P + GDFN + + I + + K N+ I
Sbjct: 296 PSFLCGDFNTEPRDEPYHILTNAGFKDSRVTIDKQFAYGHETTFTAFDKNNEPYSIIDYI 355
Query: 79 DRDNK-------------------------------------NFLIDNSFSIVSYDQSDL 101
+ S I +
Sbjct: 356 WSPYFTKLVVSNAKEQEYSDLNPGLNNNSDKDEFFGNNFFNLDHHQYYSIVIKQFGILGN 415
Query: 102 DTRRSKLSTHCPLTIEYDFEKG 123
+ S H P+ Y+ +
Sbjct: 416 FFKGFYFSDHRPVVATYELTRT 437
>gi|157371595|ref|YP_001479584.1| endonuclease/exonuclease/phosphatase [Serratia proteamaculans 568]
gi|157323359|gb|ABV42456.1| Endonuclease/exonuclease/phosphatase [Serratia proteamaculans 568]
Length = 298
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 11/118 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + ++ GD N S+ + + + P ++
Sbjct: 191 QVRELNDRTIEMRGIK---LLFGDMNDVPGSVT-WTELSRYWND-----IMPAAQDGRSW 241
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + +DY + L + S D + + +S H P+ E +
Sbjct: 242 PAENAEIKVDYIFSGNAQRWHLDSLTVPNASGDWNGIHWPA--VSDHLPVVAELRLTE 297
>gi|312381587|gb|EFR27301.1| hypothetical protein AND_06082 [Anopheles darlingi]
Length = 517
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 9/103 (8%), Positives = 26/103 (25%), Gaps = 20/103 (19%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------------- 49
E ++ + + + P ++ GD N I + K +
Sbjct: 149 EKFHQYLRE-LDSKKPVILCGDMNVAHEEIDLANPKTNKKNAGFTQEERDGLSKLLSFGF 207
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF 91
+ ++++ + F++ F
Sbjct: 208 VDTFRQLYPDRKAA-YSFWTYMGGARAKNVGWRLDYFIVSQRF 249
>gi|126664651|ref|ZP_01735635.1| Metal-dependent hydrolase [Marinobacter sp. ELB17]
gi|126630977|gb|EBA01591.1| Metal-dependent hydrolase [Marinobacter sp. ELB17]
Length = 289
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 33/122 (27%), Gaps = 22/122 (18%)
Query: 2 LSQQGEWLK-KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
LS+ + + + I V+ GD N + Q P
Sbjct: 180 LSKSAQQRQLGFVSDLISDYRHVVLMGDMNAHAEQLLTNTPLKQ-------TDLIPLPAN 232
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ R ++ + L+ S + S +S H P+ ++
Sbjct: 233 AHSFPSWR---------PEKALDHILVSPSLQVHSSGVVSYP-----VSDHLPIALDITL 278
Query: 121 EK 122
K
Sbjct: 279 PK 280
>gi|325915987|ref|ZP_08178280.1| metal-dependent hydrolase [Xanthomonas vesicatoria ATCC 35937]
gi|325537797|gb|EGD09500.1| metal-dependent hydrolase [Xanthomonas vesicatoria ATCC 35937]
Length = 279
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 32/119 (26%), Gaps = 10/119 (8%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + P VIAGDFN +++ + + + + +
Sbjct: 161 RQIGDLLDFIAS-TSVQAPVVIAGDFNTAADALDL-EALRRGYGDSYGSVHRNSDATVST 218
Query: 64 NVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + +D+ ++ Y S H + +
Sbjct: 219 LNLHVFDKPARIDHVFFQQNRLLAREARILFDTPY------AEGRWASDHYGVWVRLQL 271
>gi|227329801|ref|ZP_03833825.1| hypothetical protein PcarcW_21668 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 255
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 21/115 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L +Q + P ++AGDFN Q+++ +E
Sbjct: 162 KQLATIGEQLVHHQGPAIMAGDFNA---------WSQQRINALNRFATRMGLQEVHFVDD 212
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
R K+ + + +S + + S H PL +E+
Sbjct: 213 HRRKAFGRPLDFVFYRELTVNQSSVLVT------------QASDHNPLLVEFSLS 255
>gi|220915367|ref|YP_002490671.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter dehalogenans
2CP-1]
gi|219953221|gb|ACL63605.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter dehalogenans
2CP-1]
Length = 389
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 6/103 (5%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID- 79
P V+ GD N + + G+ + + C D D
Sbjct: 276 RPVVLVGDLNSQPGTEGEAVLAAAGFSDVWAAVNGDAPGLTCCFPEDLRIGPGDPGFADL 335
Query: 80 -RDNKNFLIDNSFSIVSYDQ----SDLDTRRSKLSTHCPLTIE 117
L+ S + +D S H + E
Sbjct: 336 STRIDYVLVRGPVEPWSAEVVGETADERVGGLWPSDHAGVAAE 378
>gi|332701930|ref|ZP_08422018.1| Endonuclease/exonuclease/phosphatase [Desulfovibrio africanus str.
Walvis Bay]
gi|332552079|gb|EGJ49123.1| Endonuclease/exonuclease/phosphatase [Desulfovibrio africanus str.
Walvis Bay]
Length = 352
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 16/109 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A + + P ++ GD N S ++++ +
Sbjct: 232 AREARDSEHPVIVMGDLNDVAWSHTTR--LFRRISEMLDPRVGRGHFPTYP--------- 280
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + S +V + S H P+ E+ E
Sbjct: 281 VALPFLRYPLDHVFHSRSLRLVEFK-----RLPDIGSDHFPVYAEFSLE 324
>gi|319902825|ref|YP_004162553.1| Endonuclease/exonuclease/phosphatase [Bacteroides helcogenes P
36-108]
gi|319417856|gb|ADV44967.1| Endonuclease/exonuclease/phosphatase [Bacteroides helcogenes P
36-108]
Length = 345
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 38/150 (25%), Gaps = 35/150 (23%)
Query: 6 GEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR--------- 54
+ LK AD +I+ +I GDFN ++ P
Sbjct: 194 AKRLKAAADSLYRIRQHAQILILGDFNDYPTDKSIRQILQAEVPPPASGTLHPRKLYHLL 253
Query: 55 ---FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--------SDLDT 103
+K+ + LD+ ++ + + S D D
Sbjct: 254 ANKAICQKDFGSYKYRGEWGLLDHIIVSGNLLDPNYPLYTSEAKADVFQRPFLLTEDKKY 313
Query: 104 RRSKL-------------STHCPLTIEYDF 120
+ S H P+ E+
Sbjct: 314 GGKQPFRTYYGMKYQAGYSDHLPVWTEFRL 343
>gi|315607086|ref|ZP_07882090.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
buccae ATCC 33574]
gi|315251140|gb|EFU31125.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
buccae ATCC 33574]
Length = 312
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 15/120 (12%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ ++ ++AGDFN +S D + + + SLD
Sbjct: 194 RLLQPDAQIILAGDFNDYADSPAL-DSLYIHDMHNVSATARGANGARGTYRFRGEWGSLD 252
Query: 75 YFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKL-------------STHCPLTIEYDF 120
+ L + + + + D S H PL +
Sbjct: 253 QIICSLSVAGKLANCHIGDLPFLLEEDEKYGGVHPRRTYLGPKYQRGFSDHLPLVARFKL 312
>gi|260889173|ref|ZP_05900436.1| endonuclease/exonuclease/phosphatase family protein [Leptotrichia
hofstadii F0254]
gi|260861233|gb|EEX75733.1| endonuclease/exonuclease/phosphatase family protein [Leptotrichia
hofstadii F0254]
Length = 263
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 4/108 (3%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ KT ++ GDFN N + +Q + GL + ++ V
Sbjct: 158 ILNRSKTDNLKILMGDFNTDANGNPED---YQNILNQGLFDTYTLAEKKDSGVTVDKGIH 214
Query: 73 LDYFVIDR-DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + +S H + +E +
Sbjct: 215 GWDQDKSQKRIDYIFCNKEIKVKESKVIFDGKNKGVVSDHFGVEVEIE 262
>gi|124006037|ref|ZP_01690874.1| endonuclease/exonuclease/phosphatase family [Microscilla marina
ATCC 23134]
gi|123988444|gb|EAY28090.1| endonuclease/exonuclease/phosphatase family [Microscilla marina
ATCC 23134]
Length = 584
Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 15/137 (10%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ Q +K + +K ++ GDFN + D F Q P
Sbjct: 323 VRRDQLTVMKAFVLRKTGGKGRIIMLGDFNIGEDKQNDLRTFLQAFIPAREGPMPYTIGA 382
Query: 61 STCN------------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS-- 106
N + + + + + + +Q + R
Sbjct: 383 ENVYGGDKQKLDYALFWDYTNAADAQLYEPVTHFQRTFCPRATMVNNANQGENTEWRDVF 442
Query: 107 -KLSTHCPLTIEYDFEK 122
LS H P+ + + +
Sbjct: 443 ADLSDHYPVYGRFVYNE 459
>gi|329724184|gb|EGG60699.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus 21172]
Length = 269
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 138 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 197
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 198 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 257
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 258 FSDHYPIKA 266
>gi|325088036|gb|EGC41346.1| glucose-repressible alcohol dehydrogenase [Ajellomyces capsulatus
H88]
Length = 769
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 28/128 (21%), Gaps = 25/128 (19%)
Query: 19 TGIPFVIAGDFNRKINS---------------IGDTDDFWQKMDPDGLLIRFP------- 56
+ IP +I GDFN S + + G+ F
Sbjct: 617 SHIPLIICGDFNSYPGSAVHELMSRGRLIEDHPDLEKRLYGNLSRVGMSYPFNLKSAYGA 676
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCPL 114
+ N +DY Y S H L
Sbjct: 677 IGELDFTNYTPDFADVIDYIWYTSSALQVTGLLGAVDKEYLQRVPGFPNY-HFPSDHLAL 735
Query: 115 TIEYDFEK 122
E+ F+
Sbjct: 736 MAEFSFKS 743
>gi|260597181|ref|YP_003209752.1| hypothetical protein CTU_13890 [Cronobacter turicensis z3032]
gi|260216358|emb|CBA29386.1| Uncharacterized protein ybhP [Cronobacter turicensis z3032]
Length = 270
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + G P V+AGDFN ++ D + R
Sbjct: 167 RQAQLMMLAELVNS-LPEGEPVVVAGDFNDWRQ--QANRILRKEAGLDEVFTRAH----- 218
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL +E
Sbjct: 219 -----GRPARTFPVSFPLLRLDRIYVKNA--SASAPTALPLRNWRHLSDHAPLAVEIHL 270
>gi|256374492|ref|YP_003098152.1| endonuclease/exonuclease/phosphatase [Actinosynnema mirum DSM
43827]
gi|255918795|gb|ACU34306.1| Endonuclease/exonuclease/phosphatase [Actinosynnema mirum DSM
43827]
Length = 323
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 12/115 (10%), Positives = 26/115 (22%), Gaps = 16/115 (13%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+W + A + G V+AGDFN ++ +++ G +
Sbjct: 219 AQWRRDLAALPPRNADGPIRVLAGDFNATLDHAP-----LRRLLDTGYADAADRVGAGLT 273
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S H + ++
Sbjct: 274 PTWP-------NEGVVPPLVALDHV--LVDDRCPVDWFTAVDVPGSDHRAVVAQF 319
>gi|71655513|ref|XP_816327.1| apurinic/apyrimidinic endonuclease [Trypanosoma cruzi strain CL
Brener]
gi|70881447|gb|EAN94476.1| apurinic/apyrimidinic endonuclease, putative [Trypanosoma cruzi]
Length = 522
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 25/119 (21%), Gaps = 25/119 (21%)
Query: 23 FVIAGDFNRK----------------------INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
F+ AGD N + + + K
Sbjct: 406 FIWAGDLNVAERDYDRYFAGSYKAMQKCSGFTPEERASFRETLRVANAVDTFRALYP-KA 464
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + F++ + + S HCPL +
Sbjct: 465 APVYTFWSARINGRARGLGWRLDYFVVSAALARH--VVDCFTMPHVMGSDHCPLQMWLR 521
>gi|326488923|dbj|BAJ98073.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 27/126 (21%), Gaps = 22/126 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIG--------DTDDFWQK------------MDP 48
+ +KI + GD N ++ + D +QK
Sbjct: 378 QRIPEKIIDHDRVIWLGDLNYRISLSYEDTKKLLTENNWDALFQKDQLNTERDSGRVFRG 437
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ R + + QS SK
Sbjct: 438 WSEEKIYFAPTYKYTFNSDSYSGETATSKKKRRTPAWCDRILWHGDGIAQSSYFRGESKF 497
Query: 109 STHCPL 114
S H P+
Sbjct: 498 SDHRPV 503
>gi|297161245|gb|ADI10957.1| hypothetical protein SBI_07837 [Streptomyces bingchenggensis BCW-1]
Length = 271
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 14/116 (12%), Positives = 24/116 (20%), Gaps = 19/116 (16%)
Query: 13 ADQKIKTGIPF-VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
DQ + +P+ V+AGD N G L + +
Sbjct: 153 LDQLARLDVPYTVLAGDINDPPEGRAFRRLA-------GPLRDAWATEPWGSELTY---- 201
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQS-----DLDTRRSKLSTHCPLTIEYDFEK 122
I+ + S H P+ +
Sbjct: 202 --PPGQPRERIDALFATEGVEILGCGVPAGLPGVTEADLRAASDHLPVLAALRLPR 255
>gi|168024169|ref|XP_001764609.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684187|gb|EDQ70591.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 847
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 29/118 (24%), Gaps = 21/118 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + P V++GDFN + + ++
Sbjct: 750 KLQAAA----IASVVNLTRPLVLSGDFNMAPLTDAYNTTVASGILDSYVVQ--------- 796
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
N D VS+ + ++K S P+ +DF
Sbjct: 797 ------NGPWKSPGDRDPGAGLVFSSPKLKCVSWKEPYY--DQTKTSDGYPIVATFDF 846
>gi|303289617|ref|XP_003064096.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454412|gb|EEH51718.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 332
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 24/137 (17%)
Query: 5 QGEWL----KKWADQKIK--------TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL 52
Q E L + + P +IAGDFN S + + P
Sbjct: 199 QAERLCAEVAHFMREHEDKLSPGESVASTPVIIAGDFNSVPGS-EVHARMLRGIIPGVED 257
Query: 53 ---------IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
R + + NV +DY + + +I +
Sbjct: 258 GGGELKPAPTRPETGEPAHTNVTPGFTDCIDYVFVSDGVDVTAAEPLPAIEHLGEG--LP 315
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H +T++ F
Sbjct: 316 NENHPSDHLSVTVDVAF 332
>gi|154334845|ref|XP_001563669.1| AP-endonuclease [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134060691|emb|CAM37706.1| apurinic/apyrimidinic endonuclease-redox protein [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 444
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 26/114 (22%), Gaps = 27/114 (23%)
Query: 23 FVIAGDFNRKINSIG-DTDDFWQKMDPDGLLI----------------------RFPQEK 59
F+ AGD N ++ M +PQ
Sbjct: 327 FIWAGDLNVAERDYDRYYAGTFKSMQESSGFAPEERMSFRETMRRTSSVDVFRQLYPQAG 386
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+R L F++ + ++ Y S HCP
Sbjct: 387 PVYSFWSQRINGRLRNLGW--RLDYFIVSSRLAL--YVVDCFPMPTVMGSDHCP 436
>gi|125579657|gb|EAZ20803.1| hypothetical protein OsJ_36426 [Oryza sativa Japonica Group]
Length = 787
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 4/105 (3%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE----STCNVIKRNKS 71
+ + +P+++ GDFN + + Q + V +
Sbjct: 9 RQFSNLPWLVLGDFNEALWQFEHFSVRQRNETQMQSFRDVLQTCDLHALGFSGVPYTYDN 68
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ R + + ++ + + + S S HCP+++
Sbjct: 69 RREGRNNIRVRLDRALADNDWREMFGNARVSHLTSTRSDHCPISV 113
>gi|312602232|ref|YP_004022077.1| ATP-dependent DNA ligase [Burkholderia rhizoxinica HKI 454]
gi|312169546|emb|CBW76558.1| ATP-dependent DNA ligase (EC 6.5.1.1) [Burkholderia rhizoxinica HKI
454]
Length = 1123
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 11/126 (8%), Positives = 35/126 (27%), Gaps = 19/126 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----------------FWQKMDPDG 50
+ L + A + P V+AG++N + + + Q +
Sbjct: 134 DKLIEHAATMVNDSRPVVLAGNYNVVLTDEDIYNPRSWLKDALLQPQSRQRYAQLLAQGW 193
Query: 51 LL--IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL-DTRRSK 107
+K + + + + ++ + ++ + + +
Sbjct: 194 TDARRVLHPDKRNYTFWDDFRQHWQTHSGLRIEHLLLNRALAPALTAAEVDIWGAASHKR 253
Query: 108 LSTHCP 113
+ H P
Sbjct: 254 ATMHRP 259
>gi|227112974|ref|ZP_03826630.1| hypothetical protein PcarbP_08419 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 130
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 21/115 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L +Q + P ++AGDFN Q+++ +E
Sbjct: 37 KQLAAIGEQLLHHQGPAIMAGDFNA---------WSQQRINALNRFAARMGLQEVHFVDD 87
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+R K+ + + +S + + S H PL +E+
Sbjct: 88 QRRKAFGRPLDFVFYRELTVNQSSVLVT------------QASDHNPLLVEFSLN 130
>gi|260896624|ref|ZP_05905120.1| nuclease [Vibrio parahaemolyticus Peru-466]
gi|308086332|gb|EFO36027.1| nuclease [Vibrio parahaemolyticus Peru-466]
Length = 984
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 15/130 (11%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L ++ +K G AG + ++ L ++
Sbjct: 723 LTDYSKEKY--GRDIYTAGYTTINGGELQVEQTQIKQGYGLNNLNTLLHGTDTFSYTYSG 780
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LSTHCPLT 115
+LDY + ++ ++ +S+L SK S H P+
Sbjct: 781 ELGNLDYALASNSLAQKVVAIEDWHINSLESNLFEYGSKYTGDMPKYKDAFSASDHDPVI 840
Query: 116 IEYDFEKGNV 125
I D ++
Sbjct: 841 IAIDLPDTDI 850
>gi|326797545|ref|YP_004315364.1| endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
gi|326548309|gb|ADZ76694.1| Endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
Length = 348
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 13/102 (12%), Positives = 25/102 (24%), Gaps = 21/102 (20%)
Query: 21 IPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++AGDFN + + WQ + L +
Sbjct: 266 KPIILAGDFNSLPVNDDIIKIQETWQYLSDPSLKTMPSNDP------------------- 306
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + S H P+ ++ +F
Sbjct: 307 IWTLDYIWGYKANGHAYKVSNTKVIEEKTASDHLPVYVDVEF 348
>gi|15924993|ref|NP_372527.1| truncated beta-hemolysin [Staphylococcus aureus subsp. aureus Mu50]
gi|156980320|ref|YP_001442579.1| truncated beta-hemplysin [Staphylococcus aureus subsp. aureus Mu3]
gi|14247776|dbj|BAB58165.1| truncated beta-hemolysin [Staphylococcus aureus subsp. aureus Mu50]
gi|156722455|dbj|BAF78872.1| truncated beta-hemplysin [Staphylococcus aureus subsp. aureus Mu3]
Length = 289
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 158 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 217
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 218 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 277
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 278 FSDHYPIKA 286
>gi|332141744|ref|YP_004427482.1| Endonuclease/exonuclease/phosphatase [Alteromonas macleodii str.
'Deep ecotype']
gi|327551766|gb|AEA98484.1| Endonuclease/exonuclease/phosphatase [Alteromonas macleodii str.
'Deep ecotype']
Length = 325
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 16/107 (14%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
++ KT P ++AGD N +K L+ + + N
Sbjct: 232 EEIAKTEGPIIVAGDLNDVA-----WSPTTRKFKKISGLLDPREGRGFY------NTFHA 280
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
Y ++ + F++V + S H PL E F
Sbjct: 281 KYPLVKWPLDHVFHSRHFALVHIE-----KLEGIGSDHYPLYTELAF 322
>gi|298207997|ref|YP_003716176.1| hypothetical protein CA2559_07085 [Croceibacter atlanticus
HTCC2559]
gi|83850638|gb|EAP88506.1| hypothetical protein CA2559_07085 [Croceibacter atlanticus
HTCC2559]
Length = 340
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 25/116 (21%), Gaps = 20/116 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E LK + + +I D N S L
Sbjct: 245 QMEQLKAHIET---SPYKVIICSDLNNSAFSYVYRAIKGNTYKDAFKLA----------- 290
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S D L D + T K S H P+ ++
Sbjct: 291 -GNGFGKSFDLDFFPLRIDFILSDKTI-----PIKGFTTYTKKFSDHFPIKADFSL 340
>gi|325521811|gb|EGD00543.1| endonuclease/exonuclease/phosphatase [Burkholderia sp. TJI49]
Length = 132
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 1/96 (1%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+I GDFN S + +D + + D
Sbjct: 38 IICGDFNSAFGSDAYRR-LLEPIDDAPAFVDAWIARHPGRTQPPTAGVYDTAQWSDGPLA 96
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + +++ + S H P+ +E +
Sbjct: 97 CDFLFVTDTLLPRVARCEIDGDVRASDHQPVVLELN 132
>gi|74318784|ref|YP_316524.1| hypothetical protein Tbd_2766 [Thiobacillus denitrificans ATCC
25259]
gi|74058279|gb|AAZ98719.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 281
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 35/131 (26%), Gaps = 18/131 (13%)
Query: 2 LSQQGEWLKKWADQKIKTGIPF---------VIAGDFNRKINSIGDTDDFWQKMDPD--- 49
L + + +WA + + G PF ++ GD N ++ D
Sbjct: 156 LHAEACAMTRWAAPEEERGGPFASQGRPAQAILCGDMNFSPSAAERARLLAPFADATPAW 215
Query: 50 -GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+V +D+ D S ++ Y
Sbjct: 216 VDAWTALHPGVPHPPSVGIHPVDFVDHP-ECFDFVFATEGLSAALSDYGVDAETE----A 270
Query: 109 STHCPLTIEYD 119
S H P+ + D
Sbjct: 271 SDHQPVWVALD 281
>gi|330901157|gb|EGH32576.1| exonuclease III [Pseudomonas syringae pv. japonica str. M301072PT]
Length = 53
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 11/52 (21%), Gaps = 2/52 (3%)
Query: 70 KSSLDYFVIDRDNKNFLID--NSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + I K S H P+ +E
Sbjct: 2 RGFEDEPKRGLRIDLIMTSTGLQPRIKEAGVDYDLRAMEKPSDHAPIWLELS 53
>gi|225424470|ref|XP_002281659.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|297737580|emb|CBI26781.3| unnamed protein product [Vitis vinifera]
Length = 439
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 33/134 (24%), Gaps = 23/134 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLIR------------ 54
QKI ++ GD N +++ W + + L+
Sbjct: 263 VPQKILDHDRVILLGDLNYRVSLPEETTRLLVDKREWSTLLENDQLMMEVMDGQVLGGWQ 322
Query: 55 -----FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F + N S R + + Q K+S
Sbjct: 323 EGHIEFAPTYKYYPNSDVYYGGSQGQKGEKRRAPAWCDRIIWYGKGLKQQLYTRGEVKIS 382
Query: 110 THCPLTIEYDFEKG 123
H P+ + E G
Sbjct: 383 DHRPVKAIFTAEVG 396
>gi|327349957|gb|EGE78814.1| DNA lyase Apn2 [Ajellomyces dermatitidis ATCC 18188]
Length = 642
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 15/149 (10%), Positives = 31/149 (20%), Gaps = 43/149 (28%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIG------------------------------- 37
L + G ++ GD N + I
Sbjct: 182 LDARVRNLVAMGKRVIVMGDLNICGSEIDSARALEEIRKGNLTDSEFVSAPVRRVFNQLV 241
Query: 38 -------DTDDFWQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
D D + L ++ ++ +R + + D
Sbjct: 242 YGGKVIGDRDQGRETPILVDLCRKYHPDRPGMYTCWEQRVNARPGNYGSRIDYVLCDKRM 301
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S HCP+ +
Sbjct: 302 EDWFSASNI----QEGLMGSDHCPVFADL 326
>gi|296084774|emb|CBI14797.3| unnamed protein product [Vitis vinifera]
Length = 379
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 13/126 (10%), Positives = 25/126 (19%), Gaps = 22/126 (17%)
Query: 13 ADQKIKTGIPFVIAGDFN----------RKINSIGDTDDFW------------QKMDPDG 50
++I + GD N + D D +
Sbjct: 245 IPERIVDHDRIIWLGDLNYRVALSYEETIILLEDNDWDSLLLKDQLIVERLAGRVFTGWN 304
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
F + R + + +Q S+ S
Sbjct: 305 EGRIFFAPTYKYSHNSDSYAGETVKSKKKRRTPAWCDRILWLGEGIEQLSYIRGESRFSD 364
Query: 111 HCPLTI 116
H P+ +
Sbjct: 365 HRPVCV 370
>gi|315125744|ref|YP_004067747.1| hypothetical protein PSM_A0646 [Pseudoalteromonas sp. SM9913]
gi|315014258|gb|ADT67596.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
Length = 359
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 26/112 (23%), Gaps = 16/112 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A P ++AGD N + + + + N
Sbjct: 229 AKALKNPSRPTIVAGDLNDVA-----WSRSTRLFMQISGFLDPRKGRGFY------NTFH 277
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
YF + + + + S H L E +E N
Sbjct: 278 AGYFFMRWPLDHLFHS-----TGFTVKRIKRLAKYGSDHFALLTELVYEDAN 324
>gi|149173866|ref|ZP_01852495.1| hypothetical protein PM8797T_05495 [Planctomyces maris DSM 8797]
gi|148847396|gb|EDL61730.1| hypothetical protein PM8797T_05495 [Planctomyces maris DSM 8797]
Length = 339
Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + + + T +P ++ GDFN D ++++ +
Sbjct: 236 RDELQQLSRRLSE-LPTDLPVIVGGDFNVNP-----RDPIFRELPANLRDAFTSAGV--- 286
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+++ D F + ++L H + + E
Sbjct: 287 -----GWGNTITNEAPFLRIDQVWCDTRFQPLR-VIAELSEDT----DHRSVIADLLLEP 336
Query: 123 G 123
G
Sbjct: 337 G 337
>gi|289168236|ref|YP_003446505.1| hypothetical protein smi_1403 [Streptococcus mitis B6]
gi|288907803|emb|CBJ22643.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 271
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 11/106 (10%), Positives = 26/106 (24%), Gaps = 2/106 (1%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ P ++AGDFN G + ++S +
Sbjct: 168 LKELNKPLLLAGDFNNPAGQEGYQAILASPLGLQDAFEVAQ--EKSGSYTVPPEIDGWKG 225
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ + ++S H L+ ++
Sbjct: 226 NTEPLRIDYVFTTKELAVEKLHVVFDGNKSPQVSDHYGLSAILSWK 271
>gi|218679478|ref|ZP_03527375.1| putative phosphatase protein [Rhizobium etli CIAT 894]
Length = 162
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 37/140 (26%), Gaps = 30/140 (21%)
Query: 4 QQGEWLKKWADQKIKTG-----------------IPFVIAGDFNRKINSIGD------TD 40
Q ++L + ++ G +++ GDFN + S
Sbjct: 26 HQLQFLNAHINAFVQEGGSLTGGGELDLPEPPLPEDYLVMGDFNMEPESPEYCALAGAGG 85
Query: 41 DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQ 98
++ ++ G I ++ + D+ + + S
Sbjct: 86 GYYGRITRIGTPIDAFAALDAYRPDSYSWMNPEDHS-ERMHLDYCFVSCGLKDRLKSARI 144
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
S H PL +E
Sbjct: 145 DTQSVG----SDHFPLWVEI 160
>gi|320581501|gb|EFW95721.1| hypothetical protein HPODL_2574 [Pichia angusta DL-1]
Length = 294
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
+GD N ++ S D+ ++ L + ++ NK ++ + +
Sbjct: 76 VFASGDLNYRLESRNVNDNIYKGDYEKLLESDQLRAQK--------NKGNIFSGFSEAEI 127
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEYDFE 121
+ + Y+++ + + ++ S H P+ E+ +
Sbjct: 128 RFRPTFKVTETLEYEETRVPSYTDRILGSDHLPVVAEFALD 168
>gi|300939825|ref|ZP_07154463.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 21-1]
gi|300455357|gb|EFK18850.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 21-1]
Length = 253
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L +W ++ + G ++AGDFN +D
Sbjct: 150 RQAQLAMLAEWVNE-LPDGELVLVAGDFNDWRQKANHPLKVQAGLDE------------I 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 197 FTRAHGRPARTFPVQFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 253
>gi|313127359|ref|YP_004037629.1| endonuclease/exonuclease/phosphatase family protein
[Halogeometricum borinquense DSM 11551]
gi|312293724|gb|ADQ68184.1| endonuclease/exonuclease/phosphatase family protein
[Halogeometricum borinquense DSM 11551]
Length = 471
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 13/131 (9%), Positives = 34/131 (25%), Gaps = 18/131 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L D V+ GD N + ++ + + ++
Sbjct: 246 QADELASVLD---DIDGRTVLLGDLNDGP---AYKNGAYETLTSNLADAWKQARSDADGF 299
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD------------QSDLDTRRSKLSTHC 112
R+ + + + + L+ + + + +R S H
Sbjct: 300 TCCRSATLDGEESMPKRVDHVLVRSGVAATDAKLIGAGAESRLHTTVNGSSRTLWPSDHA 359
Query: 113 PLTIEYDFEKG 123
+ + G
Sbjct: 360 GVVATLELGSG 370
>gi|163802759|ref|ZP_02196649.1| tryptophanyl-tRNA synthetase [Vibrio sp. AND4]
gi|159173466|gb|EDP58288.1| tryptophanyl-tRNA synthetase [Vibrio sp. AND4]
Length = 975
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 15/130 (11%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L ++ +K G A N I K L ++
Sbjct: 723 LTDYSKEKY--GRDIYTAAYTNVDGGEIQVDKSKIDKGYGYYNLNTLLHGADTFSYTYSG 780
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LSTHCPLT 115
+LD+ + ++ ++ +S+L SK S H P+
Sbjct: 781 ELGNLDHALASNGLAQKVVAIEDWHINSLESNLFEYSSKYTGDMPKYQDAFSASDHDPVI 840
Query: 116 IEYDFEKGNV 125
I DF ++
Sbjct: 841 IAIDFPDTDI 850
>gi|114765781|ref|ZP_01444876.1| hypothetical protein 1100011001350_R2601_23720 [Pelagibaca
bermudensis HTCC2601]
gi|114541888|gb|EAU44924.1| hypothetical protein R2601_23720 [Roseovarius sp. HTCC2601]
Length = 306
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 15/117 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
E + I +G P V+AGDFN W+ M+ +
Sbjct: 201 RLSAELIADRLRPVIDSGTPVVLAGDFNALAG--------WEVMESLEAAGLRFPKVPGA 252
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV-SYDQSDLDTRRSKLSTHCPLTIEY 118
+ + V + + H P+ ++
Sbjct: 253 TYH------LDRGLHLLPAIDHIGHSPGLRGVGGPHVPQIRVDGVWPADHHPVVLDL 303
>gi|326445205|ref|ZP_08219939.1| endonuclease/exonuclease/phosphatase [Streptomyces clavuligerus
ATCC 27064]
Length = 319
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 27/125 (21%), Gaps = 16/125 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------DDFWQKMDPDGLLIRFP 56
+Q +++ + + G +IAGDFN + + D G
Sbjct: 181 EQLRFVRDRLESYHRAGETALIAGDFNVQPDDPRLDSYYSAGADPTNNPGTHTGAYRELD 240
Query: 57 ----QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY-----DQSDLDTRRSK 107
+ + + S Y T
Sbjct: 241 DSDTNCPGYGEWTFDKEQRLAPCGTKKWKLDLVFVRESDLAGPYSADALGIPTGCTGAGA 300
Query: 108 LSTHC 112
S H
Sbjct: 301 CSDHR 305
>gi|283807250|pdb|3L1W|A Chain A, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
gi|283807251|pdb|3L1W|B Chain B, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
gi|283807252|pdb|3L1W|C Chain C, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
gi|283807253|pdb|3L1W|D Chain D, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
gi|283807254|pdb|3L1W|E Chain E, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
gi|283807255|pdb|3L1W|F Chain F, The Crystal Structure Of A Functionally Unknown Conserved
Protein From Enterococcus Faecalis V583
Length = 257
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N +
Sbjct: 157 AQYPTLLXGDFNAESGE-EVHQLVQKKFQDSKNLATHYGPRGTFQNFTYT-----KPWAE 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 211 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 248
>gi|242239847|ref|YP_002988028.1| endonuclease/exonuclease/phosphatase [Dickeya dadantii Ech703]
gi|242131904|gb|ACS86206.1| Endonuclease/exonuclease/phosphatase [Dickeya dadantii Ech703]
Length = 253
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 30/116 (25%), Gaps = 15/116 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E L D I +P V+AGDFN +
Sbjct: 151 RQQMELLHTLLDT-IPPDVPLVVAGDFND--------------WLQQATPDLNRYARLEE 195
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K + + + I S S LS H PL +E
Sbjct: 196 VFSQHYGKPARTFPARFPLLRLDRIYVRNVRTSAPTLLGPKPWSHLSDHAPLAVEI 251
>gi|300769904|ref|ZP_07079783.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
gi|300762380|gb|EFK59197.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
Length = 326
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 10/126 (7%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ L + + ++ GDFN + D + K + + K ++
Sbjct: 200 MDQLASFIKEH-SKDRAILLMGDFNAHYSFELDNVRNFIKETRMIDTWVYLENKGIVPHI 258
Query: 66 IKRNKSSLD--YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------LSTHCPLTI 116
+ + NS + +S R LS HC +++
Sbjct: 259 DPMYSAGDILAIRKDKESIDKIMFRNSADLHFIPESYAIENRLFTDKSGLPLSDHCAVSL 318
Query: 117 EYDFEK 122
+ +E+
Sbjct: 319 SFSWER 324
>gi|221119120|ref|XP_002156178.1| PREDICTED: similar to Deoxyribonuclease gamma isoform 1 [Hydra
magnipapillata]
Length = 98
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 4/96 (4%)
Query: 26 AGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNF 85
GDFN I ++ D Q + V K + + +
Sbjct: 1 MGDFNAGPKYISKKKLDQTELRTDKKFNWLLQNE--DTTVSKSHATLDRIIITGNAITQA 58
Query: 86 LIDNSFSIVSYDQSDLDT--RRSKLSTHCPLTIEYD 119
LI +S ++D+ T K+S H P+ E
Sbjct: 59 LIKDSAGTFNFDEEYKLTLEDALKISDHYPVKFEIS 94
>gi|332880309|ref|ZP_08447987.1| endonuclease/exonuclease/phosphatase family protein [Capnocytophaga
sp. oral taxon 329 str. F0087]
gi|332681754|gb|EGJ54673.1| endonuclease/exonuclease/phosphatase family protein [Capnocytophaga
sp. oral taxon 329 str. F0087]
Length = 336
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 13/139 (9%), Positives = 38/139 (27%), Gaps = 23/139 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ + + + GDFN + + + GL F +
Sbjct: 196 ARTVRAVADSVRT-ATSDARILWMGDFNADVEDRVFREVVFPYFREPGLS-PFCADGVRG 253
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLI-------DNSFSIVSYDQSDLDTRR-SKL------ 108
+ ++D+ ++ + + + T +
Sbjct: 254 SYRYRGIWETIDHILVSPVLMDNSRPFHTSDGCRAIVAFPFMCEREKTYGGVRPFRTYQG 313
Query: 109 -------STHCPLTIEYDF 120
S H P+T+++++
Sbjct: 314 PLYKGGYSDHFPVTLDFEW 332
>gi|329296918|ref|ZP_08254254.1| hypothetical protein Pstas_10850 [Plautia stali symbiont]
Length = 242
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q P ++AGDFN Q+M+ R +E R K+
Sbjct: 152 EQIQHHRGPVIMAGDFNA---------WSRQRMNALYRFAREMALREVNFTDDHRRKAFG 202
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 203 RPLDFVFYRDMKVSEASVLVT------------RASDHNPLLVEFS 236
>gi|301164025|emb|CBW23581.1| putative conserved exported protein [Bacteroides fragilis 638R]
Length = 344
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 16/145 (11%), Positives = 34/145 (23%), Gaps = 31/145 (21%)
Query: 6 GEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ------ 57
+ LK AD I + +I GDFN
Sbjct: 194 AQKLKDAADSLINVRPSAKLIIMGDFNDYPTDKSVVQVLQALSPEVSTHHDRLYHLLARK 253
Query: 58 --EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT------------ 103
++ + LD+ ++ + + + L
Sbjct: 254 AKDRNFGSYKYQGEWGLLDHLIVSGTLLDISGTLFTKEKKANVARLPFLLTKDEKYGGMQ 313
Query: 104 ---------RRSKLSTHCPLTIEYD 119
+ S H P+ ++++
Sbjct: 314 PFRTYVGMKYQEGYSDHLPVYVDFE 338
>gi|240281901|gb|EER45404.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Ajellomyces capsulatus H143]
Length = 675
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 28/128 (21%), Gaps = 25/128 (19%)
Query: 19 TGIPFVIAGDFNRKINS---------------IGDTDDFWQKMDPDGLLIRFP------- 56
+ IP +I GDFN S + + G+ F
Sbjct: 523 SHIPLIICGDFNSYPGSAVHELMSRGRLIEDHPDLEKRLYGNLSRVGMSYPFNLKSAYGA 582
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCPL 114
+ N +DY Y S H L
Sbjct: 583 IGELDFTNYTPDFADVIDYIWYTSSALQVTGLLGAVDKEYLQRVPGFPNY-HFPSDHLAL 641
Query: 115 TIEYDFEK 122
E+ F+
Sbjct: 642 MAEFSFKS 649
>gi|297589938|ref|ZP_06948578.1| Sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus MN8]
gi|297577066|gb|EFH95780.1| Sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus MN8]
Length = 280
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 149 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTEEFKDMLKNLNVNDVLYAGHNSTW 208
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 209 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 268
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 269 FSDHYPIKA 277
>gi|164687865|ref|ZP_02211893.1| hypothetical protein CLOBAR_01509 [Clostridium bartlettii DSM
16795]
gi|164603140|gb|EDQ96605.1| hypothetical protein CLOBAR_01509 [Clostridium bartlettii DSM
16795]
Length = 240
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 26/117 (22%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L+ + K FV+ GDFN S +D + ++ + +S
Sbjct: 149 KKQINELQNYIKGLKKDY--FVVLGDFNEGNLS----------LDDEIIIDVAEKLNKSN 196
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N+ + SY+ +S H P+ +
Sbjct: 197 ILTFST---------ELDRIDYMFVSNNIEVKSYEVLI-----KNMSDHYPIVAKIS 239
>gi|156934720|ref|YP_001438636.1| hypothetical protein ESA_02555 [Cronobacter sakazakii ATCC BAA-894]
gi|156532974|gb|ABU77800.1| hypothetical protein ESA_02555 [Cronobacter sakazakii ATCC BAA-894]
Length = 253
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 17/119 (14%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L + + + G P V+AGDFN + + + L
Sbjct: 150 RQAQLTMLAELVNS-LPEGEPVVVAGDFNDW------RQQANRILRNEAGLDEV------ 196
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL +E
Sbjct: 197 FTRAHGRPARTFPVSFPLLRLDRIYVKNA--SASAPTALPLRNWRHLSDHAPLAVEIHL 253
>gi|87122729|ref|ZP_01078604.1| extracellular nuclease-related protein [Marinomonas sp. MED121]
gi|86162026|gb|EAQ63316.1| extracellular nuclease-related protein [Marinomonas sp. MED121]
Length = 848
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 21/161 (13%), Positives = 41/161 (25%), Gaps = 46/161 (28%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-----TDDFW--QKMDPDGLLIR---- 54
L + ++ ++ GD N D +K+
Sbjct: 659 AVTLGDYIATNVQGD--VLVMGDLNAYGKEDPVRVLTDYDPLTAERKIVTAEQATLNGED 716
Query: 55 --------------------FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV 94
Q + SLD+ + + ++ +
Sbjct: 717 LNGGASVEVSQSYGLTNLVEHFQGAKGYSYTYSGELGSLDHALANASLMKSIVATDDWHI 776
Query: 95 SYDQSDLDTRRSK-------------LSTHCPLTIEYDFEK 122
+ +S+L S+ S H P+ IE D+EK
Sbjct: 777 NSAESNLFEYSSQYTGDLVKSDNAYSSSDHDPVIIEIDYEK 817
>gi|314934911|ref|ZP_07842270.1| sphingomyelin phosphodiesterase [Staphylococcus caprae C87]
gi|313652841|gb|EFS16604.1| sphingomyelin phosphodiesterase [Staphylococcus caprae C87]
Length = 329
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 17/130 (13%), Positives = 31/130 (23%), Gaps = 14/130 (10%)
Query: 1 MLSQQGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDD---FWQKMDPDGLLIRFP 56
+ Q + +K++ D+ I P I GD N S + +
Sbjct: 196 IRQSQMDEIKQFIKDKHIPKNEPVYIGGDLNVIKGSEEYQQMPENLNVSLPTQFEGNAYS 255
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------- 108
+ +S + S + + K
Sbjct: 256 WDTQSNGIAKYNYPKLEPQHLDYILLDRDHAQPSSWHNNVHKVKSPEWSVKSWGKTYKYN 315
Query: 109 --STHCPLTI 116
S H PL+
Sbjct: 316 DYSDHYPLSA 325
>gi|285817689|gb|ADC38176.1| truncated beta-hemolysin [Staphylococcus aureus 04-02981]
Length = 289
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 158 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 217
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 218 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 277
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 278 FSDHYPIKA 286
>gi|83643892|ref|YP_432327.1| metal-dependent hydrolase [Hahella chejuensis KCTC 2396]
gi|83631935|gb|ABC27902.1| Metal-dependent hydrolase [Hahella chejuensis KCTC 2396]
Length = 265
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 32/121 (26%), Gaps = 22/121 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L + + I+ V+ GD N + + G +
Sbjct: 158 KAQCQQL-EHVCKLIEGYEHVVLMGDLN-------NHAEQLLSSTALGRTTLVSLPERVN 209
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
R +R + ++ I + +S H P+ ++
Sbjct: 210 TFPSWR---------PERSLDHIMVSPGLQIRNAGVVCFP-----VSDHLPVAVDVALPV 255
Query: 123 G 123
G
Sbjct: 256 G 256
>gi|15927579|ref|NP_375112.1| truncated beta-hemplysin [Staphylococcus aureus subsp. aureus N315]
gi|262053147|ref|ZP_06025312.1| truncated beta-hemplysin [Staphylococcus aureus 930918-3]
gi|13701798|dbj|BAB43091.1| truncated beta-hemplysin [Staphylococcus aureus subsp. aureus N315]
gi|259158954|gb|EEW44033.1| truncated beta-hemplysin [Staphylococcus aureus 930918-3]
Length = 289
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 158 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 217
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 218 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 277
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 278 FSDHYPIKA 286
>gi|88803294|ref|ZP_01118820.1| hypothetical protein PI23P_11917 [Polaribacter irgensii 23-P]
gi|88780860|gb|EAR12039.1| hypothetical protein PI23P_11917 [Polaribacter irgensii 23-P]
Length = 336
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 31/119 (26%), Gaps = 19/119 (15%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + + + + +I GDFN + ++ + +
Sbjct: 237 FKRQASQTALFLNHEKQWKGKKIICGDFN-----NTAYSWMYHEISKNKKDAFIVAGEGF 291
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +D+ + D + T S H P+ ++
Sbjct: 292 GKSYNYWFPLRIDFILTDEAAI--------------INQFKTFTEIYSDHFPIRANINW 336
>gi|253729789|ref|ZP_04863954.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253726524|gb|EES95253.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
Length = 274
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 29/129 (22%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D F D L
Sbjct: 143 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMFKNLNVNDVLYAGHNSTW 202
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 203 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 262
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 263 FSDHYPIKA 271
>gi|222615657|gb|EEE51789.1| hypothetical protein OsJ_33245 [Oryza sativa Japonica Group]
Length = 825
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 26/108 (24%), Gaps = 7/108 (6%)
Query: 16 KIKTGIPFVIAGDFNRKINS--IGDTDDFWQKMDPDGLLIRFPQE----KESTCNVIKRN 69
G ++ GDFN + S Q + RN
Sbjct: 73 NATKGELWLCVGDFNEVLFSWEKERGHAKAQSCMDRFRQTLDCCSLSNLGFTGDPFTWRN 132
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ I + +S + + + S H P+ +
Sbjct: 133 NWCVRDGYIRERLD-RAVADSDWCCRFPSFRVRKGDPRHSDHHPVIVT 179
>gi|260788626|ref|XP_002589350.1| hypothetical protein BRAFLDRAFT_217983 [Branchiostoma floridae]
gi|229274527|gb|EEN45361.1| hypothetical protein BRAFLDRAFT_217983 [Branchiostoma floridae]
Length = 372
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 33/126 (26%), Gaps = 8/126 (6%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKEST 62
Q L ++ ++ ++AGD N + +G DG L E
Sbjct: 145 QAFELSQFIRHTGQSADVNILAGDLNNQPFELGLKIIESNTGMDDGWLTAEHKNAEDSGL 204
Query: 63 CNV--IKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQ--SDLDTRRSKLSTHCPLTI 116
DY D + V + + + S H +
Sbjct: 205 TWNLDDNNYTCYPDYPPCRYDYVLYKGSARCRVRCVHCETTMHKVPGKPFNYSDHEGVVA 264
Query: 117 EYDFEK 122
+ EK
Sbjct: 265 HLELEK 270
>gi|254495120|ref|ZP_05108044.1| endonuclease/exonuclease/phosphatase family protein [Polaribacter
sp. MED152]
gi|85819470|gb|EAQ40627.1| endonuclease/exonuclease/phosphatase family protein [Polaribacter
sp. MED152]
Length = 325
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 40/119 (33%), Gaps = 13/119 (10%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q + ++ K K P ++ GDFN + + D + F + +
Sbjct: 220 AKQFQEVEA-IFNKYKNDYPTLLLGDFNARARDKSSVVQTF-FKDDNIGNAAFNYDAIAN 277
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
K +DY ++ + Y + + S H P+ +++ +
Sbjct: 278 TFDTKDPYERIDYIFYTKE-----------TIEYVSGRVLNEYEQASDHLPVFMKFKLK 325
>gi|315605969|ref|ZP_07881000.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312251|gb|EFU60337.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 776
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 22/116 (18%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
P ++ GDFN + + + V SLD+ +
Sbjct: 589 DKPTLLVGDFNSYSQEDPVRALTARGWERVS-------GQGEASYVYSGRSGSLDHVFAN 641
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRR---------------SKLSTHCPLTIEYDF 120
K+ L + V+ +S + S H P I
Sbjct: 642 AAAKSLLAGVTSWAVNAQESVAFEYSRAGMNAHLRIEADNPYRSSDHNPEIIGLTL 697
>gi|187922295|ref|YP_001893937.1| endonuclease/exonuclease/phosphatase [Burkholderia phytofirmans
PsJN]
gi|187713489|gb|ACD14713.1| Endonuclease/exonuclease/phosphatase [Burkholderia phytofirmans
PsJN]
Length = 268
Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 13/145 (8%), Positives = 32/145 (22%), Gaps = 31/145 (21%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRK-INSIGDTDDFW---------------- 43
+ ++ + ++ GDFN + D
Sbjct: 130 IRRREA----AYLAVHAAPERLTLVTGDFNSASPHDSEPEDWAALAPHHRARYVADDLQG 185
Query: 44 ------QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN--SFSIVS 95
++ G + + + + + D L + + S
Sbjct: 186 IDRSVLAHLEAAGWVDLGQELDAAGVPTVPT-AAYRDAEFATMRCDYLLASSGLAAKARS 244
Query: 96 YDQSDLDTRRSKLSTHCPLTIEYDF 120
Y S H P+ ++
Sbjct: 245 YQVIRNSITD-TASDHYPVLATFEL 268
>gi|332670748|ref|YP_004453756.1| endonuclease/exonuclease/phosphatase [Cellulomonas fimi ATCC 484]
gi|332339786|gb|AEE46369.1| Endonuclease/exonuclease/phosphatase [Cellulomonas fimi ATCC 484]
Length = 321
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 13/108 (12%), Positives = 31/108 (28%), Gaps = 14/108 (12%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + ++AGD N ++ D + V
Sbjct: 225 ALVVAQCASTPGAIVAGDLNATLDHPALRD--LGQCVDAARAAGAGARGTWPSTVPSLLA 282
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ +D+ ++D S+ + ++ R+ S H P+
Sbjct: 283 APIDHVLVDGR--------SWRVTGFEV----LGRTGASDHRPVVARL 318
>gi|313159826|gb|EFR59182.1| endonuclease/exonuclease/phosphatase family protein [Alistipes sp.
HGB5]
Length = 326
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 26/117 (22%), Gaps = 14/117 (11%)
Query: 18 KTGIPFVIAGDFNR----------KINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+++ GDFN + +
Sbjct: 209 AEKQLWMMMGDFNSKSRVDNYEYGFPEDTTAFLVHDYICQHTPYVDVIAAKYPGEFQTTT 268
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSY----DQSDLDTRRSKLSTHCPLTIEYDF 120
+ +DY R + ++ Y S H P+ I++D
Sbjct: 269 GRRFRIDYVYCTRPLYDRIVSARVVSDEYTTPVRDPQELRNFWHPSDHRPIIIDFDM 325
>gi|260466724|ref|ZP_05812910.1| Endonuclease/exonuclease/phosphatase [Mesorhizobium opportunistum
WSM2075]
gi|259029454|gb|EEW30744.1| Endonuclease/exonuclease/phosphatase [Mesorhizobium opportunistum
WSM2075]
Length = 287
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 26/115 (22%), Gaps = 18/115 (15%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST---------CNV 65
++ FV GDFN S + + G+ + ++ V
Sbjct: 179 PELPHPEAFVGMGDFNMLAGSPEYVELAGRPDHEFGMPLTADFAVDAAVRLDVADLATWV 238
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S + S H P+ E
Sbjct: 239 DPKRPEDAS---RHKRIDYIFTSASLARSLKRLWVDRQAVG----SDHLPVWAEL 286
>gi|229056444|ref|ZP_04195857.1| Sphingomyelinase C [Bacillus cereus AH603]
gi|228720918|gb|EEL72467.1| Sphingomyelinase C [Bacillus cereus AH603]
Length = 333
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 35/137 (25%), Gaps = 19/137 (13%)
Query: 4 QQGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIR 54
+Q + ++++ + I +I GD N NS + ++ +
Sbjct: 197 KQLQEIQEFIKNKNIPNNEYVLIGGDMNVNKINAENNSNSEYASMFKTLHASVPSYTGHT 256
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------ 108
+ + S ++ + S+ + Q
Sbjct: 257 ATWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENNVLQPKSPEWSVTSWFQKYT 316
Query: 109 ----STHCPLTIEYDFE 121
S H P+ +
Sbjct: 317 YNDYSDHYPVEATISMK 333
>gi|224069926|ref|XP_002193876.1| PREDICTED: deoxyribonuclease I [Taeniopygia guttata]
Length = 284
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 11/98 (11%), Positives = 26/98 (26%), Gaps = 3/98 (3%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
+ GDFN + + + ++ + T +
Sbjct: 185 MIFLGDFNAGCSYVTSSQWPSIRLRSLPACEWLIPDSADTTVADTD-CAYDRIVACGTAL 243
Query: 83 KNFLIDNSFSIVSYDQ--SDLDTRRSKLSTHCPLTIEY 118
+ S +I ++ Q +S H P+ +
Sbjct: 244 RQGTEPGSATINNFQQKFHLQMKDALAVSDHFPVEVTL 281
>gi|182437355|ref|YP_001825074.1| hypothetical protein SGR_3562 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178465871|dbj|BAG20391.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 295
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 10/103 (9%), Positives = 23/103 (22%), Gaps = 18/103 (17%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ P ++ GDFN + + W+++ +
Sbjct: 204 AEDRGPKILLGDFNAEPAAPEL-APLWRELADADPGAPTFPAQ----------------- 245
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S S H P+ +
Sbjct: 246 DPVKRIDFVAVSRGGPGTGITVRKAWVPESVASDHRPVVADLS 288
>gi|186474872|ref|YP_001856342.1| endonuclease/exonuclease/phosphatase [Burkholderia phymatum STM815]
gi|184191331|gb|ACC69296.1| Endonuclease/exonuclease/phosphatase [Burkholderia phymatum STM815]
Length = 265
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 18/116 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ G P V+AGDFN N +++ + + + +
Sbjct: 166 RQMHWIAHWISKEAPAG-PLVLAGDFNDWRNDSV---PLFREHGLEEVATLLGEPGRTFP 221
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + LS H P
Sbjct: 222 AFSPALALDKMFVRGMKPIEWIQPAQE--------------TAWLSDHLPYMARLR 263
>gi|78708415|gb|ABB47390.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 306
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 15/123 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIG--------DTDDFWQKMDPDGLLIR 54
Q+ ++L + A + P ++ GDFN + + L
Sbjct: 106 EQKADFLTELAKEVYSQSHPLMVGGDFNILRKESEKNKSGGYTKWSFIFNAIIEQANLRE 165
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ +L+ N ++ + + + V +S H P+
Sbjct: 166 IQMGGRQFTWCNNQESPTLEKLDRVFINIDWEVAHPLTSVRPLV-------RAMSDHNPM 218
Query: 115 TIE 117
+E
Sbjct: 219 LME 221
>gi|56459690|ref|YP_154971.1| hypothetical protein IL0581 [Idiomarina loihiensis L2TR]
gi|56178700|gb|AAV81422.1| Uncharacterized conserved secreted protein [Idiomarina loihiensis
L2TR]
Length = 402
Score = 39.4 bits (90), Expect = 0.14, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 9/111 (8%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ F++ GD N + S G Q + + PQ + + + S
Sbjct: 290 LGADESFIVMGDMNAEAGSGGIDGAIEQLLQHPRVNDVKPQSRGGEQHSPDKRGSQYHTA 349
Query: 77 VIDRDNKNFLIDNSFSIVSYDQ---------SDLDTRRSKLSTHCPLTIEY 118
+ L N + S L +RS S H + ++
Sbjct: 350 AWRKRVDYVLPSNDLVVKDAGVFWPVGDEAGSRLMQKRSASSDHRMVWLDI 400
>gi|265767350|ref|ZP_06095016.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263252655|gb|EEZ24167.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 365
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 25/121 (20%), Gaps = 19/121 (15%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ S Q + + ++ GDFN S + + D
Sbjct: 263 IRSAQARTIAQEIA--HSPYPSVIVCGDFNDSPISYAH-----RVISQDMDDAFTESGCG 315
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N L+ + + S H P+
Sbjct: 316 LG--ISYNQNKFYF------RIDNILVSKNLKASGCTVDNSIKD----SDHYPIWCYITL 363
Query: 121 E 121
Sbjct: 364 P 364
>gi|291613446|ref|YP_003523603.1| endonuclease/exonuclease/phosphatase [Sideroxydans lithotrophicus
ES-1]
gi|291583558|gb|ADE11216.1| Endonuclease/exonuclease/phosphatase [Sideroxydans lithotrophicus
ES-1]
Length = 247
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 14/115 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L ++ I P VIAGDFN N + +++ + + K +
Sbjct: 145 QMRALVEYVLNDIPKDAPLVIAGDFNDWRN--QLSRALAKEIGVQDVFGL-QEGKPARSF 201
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + V Y + + +LS H L+ + +
Sbjct: 202 PSR---------IPVFRLDRIYVRGF--SVQYCDVHIGGKWRRLSDHAALSAQLE 245
>gi|221107207|ref|XP_002170688.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
Length = 495
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 14/131 (10%)
Query: 5 QGEWLKKWADQKIKTGI---PFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEK 59
Q L + ++ +K ++ GD+N K ++ + L Q
Sbjct: 365 QIAVLLNYVEKVLKEHQTKCSLIMCGDYNSKKGDPLLQFLNEKSYSLKLLYNLDYVLQCP 424
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK---------LST 110
NV ++ +D SF++ + L S
Sbjct: 425 FQLENVTGFPLFTVFVPQFRETLDYIFVDESFTLEGFVPIPLAEELEVFCALPSVVSPSD 484
Query: 111 HCPLTIEYDFE 121
H PL ++ +++
Sbjct: 485 HIPLIVDLNWK 495
>gi|53715705|ref|YP_101697.1| hypothetical protein BF4425 [Bacteroides fragilis YCH46]
gi|60683643|ref|YP_213787.1| hypothetical protein BF4223 [Bacteroides fragilis NCTC 9343]
gi|253566481|ref|ZP_04843934.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|52218570|dbj|BAD51163.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
gi|60495077|emb|CAH09896.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
gi|251944653|gb|EES85128.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|301165155|emb|CBW24725.1| conserved hypothetical protein [Bacteroides fragilis 638R]
Length = 365
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 25/121 (20%), Gaps = 19/121 (15%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ S Q + + ++ GDFN S + + D
Sbjct: 263 IRSAQARTIAQEIA--HSPYPSVIVCGDFNDSPISYAH-----RVISQDMDDAFTESGCG 315
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N L+ + + S H P+
Sbjct: 316 LG--ISYNQNKFYF------RIDNILVSKNLKASGCTVDNSIKD----SDHYPIWCYITL 363
Query: 121 E 121
Sbjct: 364 P 364
>gi|148544535|ref|YP_001271905.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|184153898|ref|YP_001842239.1| exodeoxyribonuclease III [Lactobacillus reuteri JCM 1112]
gi|227363037|ref|ZP_03847174.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|325682856|ref|ZP_08162372.1| exodeoxyribonuclease III [Lactobacillus reuteri MM4-1A]
gi|148531569|gb|ABQ83568.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|183225242|dbj|BAG25759.1| exodeoxyribonuclease III [Lactobacillus reuteri JCM 1112]
gi|227071921|gb|EEI10207.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|324977206|gb|EGC14157.1| exodeoxyribonuclease III [Lactobacillus reuteri MM4-1A]
Length = 253
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 25/131 (19%)
Query: 7 EWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------M 46
+W + + D +++ P +I GD + I +
Sbjct: 121 DWDRAFLDYVINLQSSKPVIIGGDMSIAYQPIDLAEPTENHHKAGFTKQERADFGKLLNA 180
Query: 47 DPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ R + FL+ + + + L
Sbjct: 181 GLTDTFRYLHPNLHGAYTWWSYRYDARERNVGW--RLDYFLVSDVWKERIEEAKILS--D 236
Query: 106 SKLSTHCPLTI 116
K S+HCP+ +
Sbjct: 237 VKGSSHCPIEL 247
>gi|326793816|ref|YP_004311636.1| exodeoxyribonuclease III Xth [Marinomonas mediterranea MMB-1]
gi|326544580|gb|ADZ89800.1| exodeoxyribonuclease III Xth [Marinomonas mediterranea MMB-1]
Length = 258
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 32/131 (24%), Gaps = 23/131 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------------G 50
K + + F+ G N + I + F + +
Sbjct: 132 KNHLIKTRRKRREFIFCGTANVARSPIDVSSWFVNQRNSGFLPDERKWINEIFNEHEYID 191
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ ++ + ++ + Q + + S
Sbjct: 192 AYRQVNKQDKQYTWWPDYERAWKLNEG--GRLDYQITTPGIKNQI--QGGGVYKGQRFSD 247
Query: 111 HCPLTIEYDFE 121
H PL +EYD +
Sbjct: 248 HAPLIMEYDID 258
>gi|315612842|ref|ZP_07887753.1| RgfB protein [Streptococcus sanguinis ATCC 49296]
gi|315314952|gb|EFU62993.1| RgfB protein [Streptococcus sanguinis ATCC 49296]
Length = 271
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 23/106 (21%), Gaps = 2/106 (1%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
P ++AGDFN G ++ + S +
Sbjct: 168 LKDLNKPLILAGDFNNPAGQEGYQAILASQLGLQDAFEVAK--ERSGSYTVPPEIDGWKG 225
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ S ++S H L ++
Sbjct: 226 NTEPLRIDYVFTTKELEVESLQVVFDGQNSPQVSDHYGLNAVLTWK 271
>gi|291234355|ref|XP_002737116.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 443
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 3/96 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+IAGD+N + + D ++ + + NV + V
Sbjct: 207 EDVLIAGDYNAACSYVKSDDWKNIRLRSQERFLWLIAD-NVDTNVAGDICAYDRLVVGGD 265
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPL 114
K + S +D+ T +S H P+
Sbjct: 266 LMKRAVWPGSAREFLFDKEYGLTDEQTSEVSDHYPV 301
>gi|221120952|ref|XP_002165144.1| PREDICTED: similar to enoyl Coenzyme A hydratase, short chain, 1,
mitochondrial [Hydra magnipapillata]
Length = 887
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 12/130 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKIN---SIGDTDDFWQKMDPDGLLIR------F 55
Q + + G +IAGDF ++ + L F
Sbjct: 291 QLSLINSIINTYEDEGE-CIIAGDFQSFPENIYDTEIRNNKTRNNFSKYLSNFLELNELF 349
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + K D+ L ++S +S H P+
Sbjct: 350 FLDIINGTGPTYTYKHRTLNNSPYIDHIAVLKESSICFTGCHVI--PPSHLNMSDHLPII 407
Query: 116 IEYDFEKGNV 125
+ + ++
Sbjct: 408 TNINLQNKSL 417
>gi|47208868|emb|CAG06321.1| unnamed protein product [Tetraodon nigroviridis]
Length = 441
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 9/98 (9%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---KESTCNVIKRN----KSSLD 74
P V+ GDFN + + + + + R +S+LD
Sbjct: 333 PLVVCGDFNAEPTEDVYKRFSSSPLGLSSAYKLLSSDKQTEPAYTTWKIRPSGECRSTLD 392
Query: 75 YFVIDRDNKNFLIDNSF-SIVSYDQSDLDTRRSKLSTH 111
Y D+ + + L + S H
Sbjct: 393 YIWYTGDSLSVEQLLDIPTEEQIGPDRLPSY-HYPSDH 429
>gi|154275224|ref|XP_001538463.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414903|gb|EDN10265.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 769
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 27/125 (21%), Gaps = 25/125 (20%)
Query: 22 PFVIAGDFNRKINS---------------IGDTDDFWQKMDPDGLLIRFP-------QEK 59
P +I GDFN S + + G+ F +
Sbjct: 620 PLIICGDFNSYPGSAVHELMSRGRLIEDHPDLEKRLYGNLSRVGMSYPFNLKSAYGAIGE 679
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCPLTIE 117
N +DY + Y S H L E
Sbjct: 680 LDFTNYTPDFADVIDYIWYTSNALQVTGLLGAVDKEYLQRVPGFPNY-HFPSDHLALMAE 738
Query: 118 YDFEK 122
+ F+
Sbjct: 739 FSFKS 743
>gi|333030431|ref|ZP_08458492.1| Endonuclease/exonuclease/phosphatase [Bacteroides coprosuis DSM
18011]
gi|332741028|gb|EGJ71510.1| Endonuclease/exonuclease/phosphatase [Bacteroides coprosuis DSM
18011]
Length = 343
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 41/153 (26%), Gaps = 43/153 (28%)
Query: 6 GEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFW-----QKMDPDGLLIRFPQE 58
+ L+ D I+ VI GDFN ++ T+ +++ L ++
Sbjct: 194 AKVLRNAVDSLFSIREKANIVIMGDFNDYPDNRCVTEILNATAPTKEISKHQLYHLLARK 253
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-----------------QSDL 101
+E + +F++ + + D D
Sbjct: 254 REKYTWGTYKY------KNEWGVLDHFIVSGNLLDHTQDFYTSEQQTDILKLGFLLIEDK 307
Query: 102 DTRRSKL-------------STHCPLTIEYDFE 121
SK S H P+ + +
Sbjct: 308 KYGGSKPFRTYNGMQYQAGYSDHLPIRSTFTLK 340
>gi|326427499|gb|EGD73069.1| hypothetical protein PTSG_04783 [Salpingoeca sp. ATCC 50818]
Length = 390
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 23/137 (16%)
Query: 1 MLSQQGEWLKKWADQ----KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP 56
M S Q E L + + ++ GDFN + + M + +
Sbjct: 184 MRSAQMEMLLASISEFEEGLSRPCPTAIMLGDFNAHSDEMCV------TMCEEAGFTKVF 237
Query: 57 QEKESTCNVIKRNK-----SSLDYFVIDRDNKNFLIDNSFSIVSY--------DQSDLDT 103
+ + + + D + L + +VSY
Sbjct: 238 SDVKHYPWTTWKYRHGPSADPKDEVEQKHTIDHILARPATRLVSYLALPSDDEVTQGCFP 297
Query: 104 RRSKLSTHCPLTIEYDF 120
+ S H + + +
Sbjct: 298 SATFPSDHVSVAVRIAW 314
>gi|149179298|ref|ZP_01857860.1| hypothetical protein PM8797T_00517 [Planctomyces maris DSM 8797]
gi|148841872|gb|EDL56273.1| hypothetical protein PM8797T_00517 [Planctomyces maris DSM 8797]
Length = 344
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 38/122 (31%), Gaps = 19/122 (15%)
Query: 1 MLSQQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+L + L++ ADQ + P ++ GDFN D + +
Sbjct: 236 VLKSRKAALEELADQASQLNQQPVLVLGDFN-TPGDSVHFDPLRKNFKNSLEIA------ 288
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ V D + + + R + +S H P+ IE
Sbjct: 289 ------GDGYLATWPLPVPVLDLDGIWTNEFIELYHAEN-----RWTWVSDHRPVCIEMS 337
Query: 120 FE 121
F+
Sbjct: 338 FK 339
>gi|146308751|ref|YP_001189216.1| endonuclease/exonuclease/phosphatase [Pseudomonas mendocina ymp]
gi|145576952|gb|ABP86484.1| Endonuclease/exonuclease/phosphatase [Pseudomonas mendocina ymp]
Length = 362
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 29/130 (22%), Gaps = 15/130 (11%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN--------RKINSIGDTDDFWQKMDP----- 48
+ +Q + Q P+++ GD N + ++
Sbjct: 229 MRRQVQMTDALLQQLQAGASPWILGGDLNLLPPGQFQHLPENQRGWYAADSELQDLAGRY 288
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + DR + + DT +
Sbjct: 289 PMIPSLQQASGAQQAQWYTHYPNDPAASGPDRTLDYLFYSPRLTPFASQVRQHDTLG--I 346
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 347 SDHLPVIGRF 356
>gi|108864566|gb|ABA94593.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1469
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 14/104 (13%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ + +P+++ GDFN + + E + NK
Sbjct: 552 RNSSNLPWLVIGDFNEAL------------WQFEHFSSHPRGEPQMGTPFTYDNKRQGRN 599
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
V R + I ++ ++ + L S S HCP++++
Sbjct: 600 NVRVR--LDRAIADNAWRDTFPNATLAHLASPRSDHCPISLQLS 641
>gi|327470396|gb|EGF15852.1| RgfB protein [Streptococcus sanguinis SK330]
Length = 271
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K + +K P V+ GDFN + G + +
Sbjct: 159 QGEW-AKLEAELLKVESPLVLMGDFNNPVGQQGYQTILASPLKLQDSHAVAREAIGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + +S H L ++
Sbjct: 218 --EGTIAGWDDNKHALKIDYVFTSKGMDVERSAVVFDGKETPVVSDHFGLEVQVTL 271
>gi|253565030|ref|ZP_04842486.1| endonuclease/exonuclease/phosphatase family [Bacteroides sp. 3_2_5]
gi|251946495|gb|EES86872.1| endonuclease/exonuclease/phosphatase family [Bacteroides sp. 3_2_5]
Length = 344
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 16/145 (11%), Positives = 34/145 (23%), Gaps = 31/145 (21%)
Query: 6 GEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ------ 57
+ LK AD I + +I GDFN
Sbjct: 194 AQKLKDAADSLINVRPSAKLIIMGDFNDYPTDKSVVQVLQALSPEVSTHHDRLYHLLARK 253
Query: 58 --EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT------------ 103
++ + LD+ ++ + + + L
Sbjct: 254 AKDRNFGSYKYQGEWGLLDHLIVSGTLLDISGTLFTEEKKANVARLPFLLTKDEKYGGMQ 313
Query: 104 ---------RRSKLSTHCPLTIEYD 119
+ S H P+ ++++
Sbjct: 314 PFRTYVGMKYQEGYSDHLPVYVDFE 338
>gi|227834005|ref|YP_002835712.1| putative extracellular nuclease [Corynebacterium aurimucosum ATCC
700975]
gi|262183507|ref|ZP_06042928.1| putative extracellular nuclease [Corynebacterium aurimucosum ATCC
700975]
gi|227455021|gb|ACP33774.1| putative extracellular nuclease [Corynebacterium aurimucosum ATCC
700975]
Length = 942
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 16/132 (12%), Positives = 34/132 (25%), Gaps = 19/132 (14%)
Query: 6 GEW-LKKWADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEKES 61
+ L A Q + GD N + + + Q+ S
Sbjct: 681 AQAVLDGLAKQPQWQEKATFVMGDLNAYSKEDAISVFRNAGYTIPVEELNAQEDWQDVAS 740
Query: 62 TCNVIKRNKSSLDYFVIDRDNK------NFLIDNSFSIVSYDQSDLDTRR-------SKL 108
SLD+ + + + N + Y + + +
Sbjct: 741 YQ--FSGRLGSLDHILANEHVDAQAAQTWNINSNEPIAMEYSRRNYTGGDVFEADNPYRS 798
Query: 109 STHCPLTIEYDF 120
S H P+ + ++
Sbjct: 799 SDHDPVKVGFNL 810
>gi|46200513|gb|AAL73527.2|AF466200_6 putative AP endonuclease [Sorghum bicolor]
Length = 348
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 18/166 (10%), Positives = 37/166 (22%), Gaps = 48/166 (28%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------- 41
++ +W K+ + P + GD N I +
Sbjct: 170 FQRRRKWDKRMLEFVQHVDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNQEDCG 229
Query: 42 ----------------FWQKMDPDGLLIRFPQEKESTCNVIKRNKSS--------LDYFV 77
F K+ + ++ + + + Y
Sbjct: 230 QPGFTPAERRRFGNILFQGKLVDAYRHLHKEKDMDGGFSWSGHPIGNEINFSAYSSRYRG 289
Query: 78 IDRDNKNFLIDNSFSIVSYDQS----DLDTRRSKLSTHCPLTIEYD 119
FL+ ++ S HCP+T+E
Sbjct: 290 KRMRIDYFLVSEQLKDRIVSCEMHGRGIELDGFYGSDHCPVTLELS 335
>gi|323488215|ref|ZP_08093465.1| Endonuclease/exonuclease/phosphatase [Planococcus donghaensis
MPA1U2]
gi|323398073|gb|EGA90869.1| Endonuclease/exonuclease/phosphatase [Planococcus donghaensis
MPA1U2]
Length = 279
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 15/110 (13%), Positives = 29/110 (26%), Gaps = 12/110 (10%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE-STCNVIKRNKSSLDYF 76
K+ P +I GDFN ++ QK+ ++ +
Sbjct: 167 KSHFPRIITGDFNA-----PASNVHIQKLKRHFRDAFLKMKRGDAYTYPSPYVNKETGEV 221
Query: 77 VID-RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
D +V + +S H P+ ++ V
Sbjct: 222 FRPATRIDYIFADPYLDVVQAAVI-----ETAVSDHLPIAVDMVLSDAKV 266
>gi|255006791|ref|ZP_05145392.2| phospholipase C [Staphylococcus aureus subsp. aureus Mu50-omega]
Length = 274
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 143 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 202
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 203 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 262
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 263 FSDHYPIKA 271
>gi|229083666|ref|ZP_04215990.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-44]
gi|228699629|gb|EEL52290.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-44]
Length = 263
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 37/119 (31%), Gaps = 6/119 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q L ++ + + GDFN + G+ D+ + ++ E
Sbjct: 151 FKGQVNRLIEYVN----GDELSFLMGDFNNNAHLRGEGYDYLIRKGLYDTYELAMEKDEG 206
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
T + + D + + ++S R+ +S H + ++ D
Sbjct: 207 TTV--QGKIAGWDENKQNLRIDLIFTNRPKKVLSSKVIFNGVNRNVISDHFGVEVQLDM 263
>gi|163786792|ref|ZP_02181240.1| hypothetical protein FBALC1_16442 [Flavobacteriales bacterium
ALC-1]
gi|159878652|gb|EDP72708.1| hypothetical protein FBALC1_16442 [Flavobacteriales bacterium
ALC-1]
Length = 316
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 30/121 (24%), Gaps = 17/121 (14%)
Query: 15 QKIKTGIPFVIAGDFNRKINS---------IGDTDDFWQKMDP-------DGLLIRFPQE 58
++ K+ ++ GDFN N + F + F Q
Sbjct: 193 KQKKSSAKIIVMGDFNDNPNDNSLSLLEKESELYNPFKTVWSREKGSQNYNFQWNLFDQI 252
Query: 59 KESTCNVIKRNKSSL-DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
ST N + D + + + + S H P+ I
Sbjct: 253 LFSTNFFDANNSALDFDSADVFNSKFLTQYHGKYKGQPFRTYVGKKYKGGYSDHFPVYIR 312
Query: 118 Y 118
Sbjct: 313 L 313
>gi|154291711|ref|XP_001546436.1| hypothetical protein BC1G_15146 [Botryotinia fuckeliana B05.10]
gi|150846646|gb|EDN21839.1| hypothetical protein BC1G_15146 [Botryotinia fuckeliana B05.10]
Length = 578
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 20/83 (24%), Gaps = 3/83 (3%)
Query: 36 IGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS 95
IGD D+ + + F ++ K + L
Sbjct: 171 IGDRDEGTEPQVMWDISRGFHPTRKGMFTC-WDQKMNARPGNFGSRIDYVLCSEDMKDW- 228
Query: 96 YDQSDLDTRRSKLSTHCPLTIEY 118
Q S HCP+ +
Sbjct: 229 -FQDSNIQEGLMGSDHCPVFATF 250
>gi|108762628|ref|YP_630932.1| endonuclease/exonuclease/phosphatase family protein [Myxococcus
xanthus DK 1622]
gi|108466508|gb|ABF91693.1| endonuclease/exonuclease/phosphatase family protein [Myxococcus
xanthus DK 1622]
Length = 254
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 15/117 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q+ L + P V+ GDFN + Q + L + +
Sbjct: 136 RQEALLLSSDILRDAARKDPLVVCGDFN-YWGNGPVPSLVRQAIHDAALEL----GAPAR 190
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + +D +S + R S H PL + ++
Sbjct: 191 TYPTR---------LPLLRLDRIFVDAGVRPLSIHPHRTELSRV-ASDHLPLVLRFE 237
>gi|239613861|gb|EEQ90848.1| DNA lyase Apn2 [Ajellomyces dermatitidis ER-3]
Length = 633
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 15/149 (10%), Positives = 31/149 (20%), Gaps = 43/149 (28%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIG------------------------------- 37
L + G ++ GD N + I
Sbjct: 173 LDARVRNLVAMGKRVIVMGDLNICGSEIDSARALEEIRKGNLTDSEFVSAPVRRVFNQLV 232
Query: 38 -------DTDDFWQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
D D + L ++ ++ +R + + D
Sbjct: 233 YGGKVIGDRDQGRETPILVDLCRKYHPDRPGMYTCWEQRVNARPGNYGSRIDYVLCDKRM 292
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S HCP+ +
Sbjct: 293 EDWFSASNI----QEGLMGSDHCPVFADL 317
>gi|169605269|ref|XP_001796055.1| hypothetical protein SNOG_05657 [Phaeosphaeria nodorum SN15]
gi|111065601|gb|EAT86721.1| hypothetical protein SNOG_05657 [Phaeosphaeria nodorum SN15]
Length = 399
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 36/115 (31%), Gaps = 17/115 (14%)
Query: 24 VIAGDFN-RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
+IAGDFN + + + L + ++ + + +
Sbjct: 282 LIAGDFNAIQPFDRTLHSE--NDLKDAYLELGGQEDSDDGFTWGYQVPQWMRDKFGCSRM 339
Query: 83 KNFLIDNSFSIVSYDQSDLDTR--------------RSKLSTHCPLTIEYDFEKG 123
L+ S+++ +D + ++ H + +++F +G
Sbjct: 340 DKILLRGDVRPKSFERIGVDVKVAEEERDKVQKEIEGGWVTDHYGVMGDFEFTEG 394
>gi|196014285|ref|XP_002117002.1| hypothetical protein TRIADDRAFT_60990 [Trichoplax adhaerens]
gi|190580493|gb|EDV20576.1| hypothetical protein TRIADDRAFT_60990 [Trichoplax adhaerens]
Length = 281
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 6/68 (8%), Positives = 15/68 (22%), Gaps = 5/68 (7%)
Query: 50 GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
F + + + F+ + + +
Sbjct: 214 DTFRHFYPNKTSAYSFWSYMSNARSKNIGW--RLDYFVTSKNLIPNVA--DSIIRSEIEG 269
Query: 109 STHCPLTI 116
S HCP+ +
Sbjct: 270 SDHCPIEL 277
>gi|170693952|ref|ZP_02885108.1| Endonuclease/exonuclease/phosphatase [Burkholderia graminis C4D1M]
gi|170141024|gb|EDT09196.1| Endonuclease/exonuclease/phosphatase [Burkholderia graminis C4D1M]
Length = 265
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 18/116 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ G P V+AGDFN N + + + + +
Sbjct: 166 RQMNWIAHWIAKEAPDG-PLVLAGDFNDWRNDSV---PLFGEHGLHEVATLLGEAGRTFP 221
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + LS H P
Sbjct: 222 AFSPALALDKMFVRGMKPIEWIPPTQE--------------TAWLSDHLPYMARLR 263
>gi|153009983|ref|YP_001371198.1| endonuclease/exonuclease/phosphatase [Ochrobactrum anthropi ATCC
49188]
gi|151561871|gb|ABS15369.1| Endonuclease/exonuclease/phosphatase [Ochrobactrum anthropi ATCC
49188]
Length = 337
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 14/110 (12%), Positives = 27/110 (24%), Gaps = 14/110 (12%)
Query: 11 KWADQKIKT-GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
++ + +++ P V+AGDFN S +
Sbjct: 221 RYIEPELQKLKGPLVVAGDFNAAPWSNAVRRVERASGTR--------HMTGIGGTWMTHL 272
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I L+ R S H P+ +++
Sbjct: 273 LPVKLAPYIGLPIDQILVSPEIGGAEVS-----AREDAGSDHLPVRLDFS 317
>gi|53714527|ref|YP_100519.1| hypothetical protein BF3240 [Bacteroides fragilis YCH46]
gi|52217392|dbj|BAD49985.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
Length = 344
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 16/145 (11%), Positives = 34/145 (23%), Gaps = 31/145 (21%)
Query: 6 GEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ------ 57
+ LK AD I + +I GDFN
Sbjct: 194 AQKLKDAADSLINVRPSAKLIIMGDFNDYPTDKSVVQVLQALSPEVSTHHDRLYHLLARK 253
Query: 58 --EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT------------ 103
++ + LD+ ++ + + + L
Sbjct: 254 AKDRNFGSYKYQGEWGLLDHLIVSGTLLDISGTLFTEEKKANVARLPFLLTKDEKYGGMQ 313
Query: 104 ---------RRSKLSTHCPLTIEYD 119
+ S H P+ ++++
Sbjct: 314 PFRTYVGMKYQEGYSDHLPVYVDFE 338
>gi|23004987|ref|ZP_00048036.1| COG0708: Exonuclease III [Magnetospirillum magnetotacticum MS-1]
Length = 106
Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats.
Identities = 8/67 (11%), Positives = 15/67 (22%), Gaps = 3/67 (4%)
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDTRRS 106
D P+ ++ R+ R + + +
Sbjct: 23 DAARFLTPEPEKIYTWWSYRSPDWA-AANKGRRLDHAWVSPDLAGTLRKVEVFREARGWE 81
Query: 107 KLSTHCP 113
K S H P
Sbjct: 82 KPSDHAP 88
>gi|320588962|gb|EFX01430.1| endonuclease exonuclease phosphatase family protein [Grosmannia
clavigera kw1407]
Length = 314
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 11/106 (10%), Positives = 24/106 (22%), Gaps = 2/106 (1%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST-CNVIKRNKSSLDYFVID 79
P + GDFN + + P + + D
Sbjct: 203 RPVFLGGDFNSTPDDGAYKTMTAVPGGMVDIAGLVPPSRRYGNDEFTYTSFDEPDQTPKR 262
Query: 80 RDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYDFEKGN 124
D ++ ++ LS H + + + +
Sbjct: 263 IDFLFVQKPGHIRFPTFSVLANRFDDGVFLSDHRAVVADIEIPVSS 308
>gi|242049194|ref|XP_002462341.1| hypothetical protein SORBIDRAFT_02g024070 [Sorghum bicolor]
gi|241925718|gb|EER98862.1| hypothetical protein SORBIDRAFT_02g024070 [Sorghum bicolor]
Length = 410
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 30/129 (23%), Gaps = 23/129 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLIRFPQEKESTCNV- 65
+KI V+ GD N +I+ W + + L+
Sbjct: 266 LPEKILDHDQVVLLGDLNYRISLEEAETRSLVRAKNWAILLENDQLLFEFSTGRHFEGWQ 325
Query: 66 ----------------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + + + Q +T +LS
Sbjct: 326 EGLITFSPTYKYQPNSDQYYWCFDSARSEKKRAPAWCDRILWRGKGLKQVQYETCSYRLS 385
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 386 DHRPVRAVF 394
>gi|227499267|ref|ZP_03929379.1| exodeoxyribonuclease III [Anaerococcus tetradius ATCC 35098]
gi|227218676|gb|EEI83907.1| exodeoxyribonuclease III [Anaerococcus tetradius ATCC 35098]
Length = 273
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 23/128 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ ++ + P + GDFN I M
Sbjct: 150 ADYLEE-LDKIKPVIATGDFNVAHEEIDLAHPENNHMSAGFTDEERRGFTNLLNRGFTDS 208
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ + + +R K+S FL+ + D + +D+ + +
Sbjct: 209 FRYLNKDLEGAYTWWAQRVKTSKIN-NSGWRIDYFLVSDRLIDKVKDSTMIDSGQRQ--D 265
Query: 111 HCPLTIEY 118
H P+ +E
Sbjct: 266 HTPIMLEI 273
>gi|241205438|ref|YP_002976534.1| endonuclease/exonuclease/phosphatase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859328|gb|ACS56995.1| Endonuclease/exonuclease/phosphatase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 369
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 12/165 (7%), Positives = 36/165 (21%), Gaps = 46/165 (27%)
Query: 1 MLSQQGEWLKKWAD----QKIKTGIPFVIAGDFNRKINSIGD------------TDDFWQ 44
+ + ++ + + F I GD N + ++
Sbjct: 207 IRRAEARAVRGIIEDRFGAEQAGTKSFAICGDMNDYQERVDVIGRRGTGYRFEHQNETAS 266
Query: 45 KMD----PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY---- 96
+D + + + + + ++ + + + +
Sbjct: 267 ALDVFSSDGFAENVVRRREPLDRWTLYHARGPQEQWLC--QLDYLWLSPALAAHNAGCLP 324
Query: 97 -----------------DQSDLDTRRS---KLSTHCPLTIEYDFE 121
+ K S HCP+ + D
Sbjct: 325 EIIRSGQPYRTVFPPGQEVERYPRTGWDRPKASDHCPVVMTLDLP 369
>gi|324993637|gb|EGC25556.1| RgfB protein [Streptococcus sanguinis SK405]
Length = 271
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K ++ +K P V+ GDFN + G + +
Sbjct: 159 QGEW-AKLEEELLKVKTPLVLMGDFNNPVGQQGYQTILASPLKLQDSHAVAREAIGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + +S H L ++
Sbjct: 218 --EGTIAGWDDNKHALKIDYVFTSQGMDVERSAVVFDGKETPVVSDHFGLEVQVTL 271
>gi|296103284|ref|YP_003613430.1| endonuclease/exonuclease/phosphatase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295057743|gb|ADF62481.1| endonuclease/exonuclease/phosphatase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 253
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 15/116 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L +W + + G P VIAGDFN + + L +E
Sbjct: 153 QLQMLAEWTNA-LPEGEPVVIAGDFNDW------------RQRANHPLKVEAGLEEIFTR 199
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ S + LS H PL+ E
Sbjct: 200 AHGRPARTFPVRFPLLRLDRIYVKNA--HASSPTALALLNWRHLSDHAPLSAEIHL 253
>gi|225554351|gb|EEH02650.1| SacI domain and endonuclease/exonuclease/phosphatase [Ajellomyces
capsulatus G186AR]
Length = 1241
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 19/126 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQ 57
++ I+ + GDFN +I D D +M + +
Sbjct: 787 NRSIEDHDTIIWLGDFNYRIGLPDDTVRGLIKAGDFESLYSHDQLNLQMVAGLTFPFYSE 846
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLT 115
+ + + + D + + + + L+ + L S H P+
Sbjct: 847 ARITFP-PTYKYDNGTDQYDTSEKARTPAWCDRILWKGANIRLLEYNAAPLKFSDHRPVY 905
Query: 116 IEYDFE 121
+D E
Sbjct: 906 ATFDCE 911
>gi|255976087|ref|ZP_05426673.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis T2]
gi|307279055|ref|ZP_07560113.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0860]
gi|255968959|gb|EET99581.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis T2]
gi|306504180|gb|EFM73392.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0860]
Length = 254
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 24/99 (24%), Gaps = 7/99 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++ GDFN + +K L + + N I +
Sbjct: 157 AQYPTLLMGDFNAESEE-AVHQLVQKKFQDSKNLATHYGPRGTFQNFIYT-----KPWAE 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + S H PL E
Sbjct: 211 LEEIDYIYVKGWQVQQTAS-LTDSIDGRFPSDHFPLEAE 248
>gi|300772873|ref|ZP_07082742.1| endonuclease/exonuclease/phosphatase [Sphingobacterium spiritivorum
ATCC 33861]
gi|300759044|gb|EFK55871.1| endonuclease/exonuclease/phosphatase [Sphingobacterium spiritivorum
ATCC 33861]
Length = 347
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 18/112 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNR-KINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
AD K+ +P ++ GD N + + ++ F I R
Sbjct: 228 ADMARKSRLPVIVCGDLNDVAWSYTTELFLKMSQLLDPRRGRFFM-NTFHAHYPILRFP- 285
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
LD+ D K + + +YD S H P+ FE
Sbjct: 286 -LDHIFCSTDFKLVCMK---RLHNYD-----------SDHFPIFTHLQFENS 322
>gi|164687368|ref|ZP_02211396.1| hypothetical protein CLOBAR_01009 [Clostridium bartlettii DSM
16795]
gi|164603792|gb|EDQ97257.1| hypothetical protein CLOBAR_01009 [Clostridium bartlettii DSM
16795]
Length = 215
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 34/120 (28%), Gaps = 32/120 (26%)
Query: 4 QQGEWLKKWADQKIKTG----IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+Q + + ++ ++ GDFN K + + +D ++ D L
Sbjct: 123 KQINEILNFISINLEGNIEDLAGNIVCGDFNEKNIYMNNFNDVAVDLNKDNLPTFA---- 178
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + + SY +S H P+ +E+
Sbjct: 179 -------------------KNRIDYCFISENLTAKSYTVD-----EVYMSDHFPVIVEFS 214
>gi|170595251|ref|XP_001902307.1| Endonuclease/Exonuclease/phosphatase family protein [Brugia malayi]
gi|158590094|gb|EDP28850.1| Endonuclease/Exonuclease/phosphatase family protein [Brugia malayi]
Length = 391
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 35/126 (27%), Gaps = 11/126 (8%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP-------- 56
Q L ++ + ++AGDFN + +++ D + +
Sbjct: 155 QAFELAQFVKHTSYSADALILAGDFNIEPDNLAYQLIMKNANLRDAWIQKPNSCDDCGAT 214
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL---STHCP 113
+ C +R K+ Y + + + K S H
Sbjct: 215 FGRLDNCYTPQRLKNKKCYGKRLDYIMYRSGKSKIELKLCEIRMNRIHDQKSINYSDHVG 274
Query: 114 LTIEYD 119
+ E+
Sbjct: 275 IYAEFS 280
>gi|322374633|ref|ZP_08049147.1| RgfB protein [Streptococcus sp. C300]
gi|321280133|gb|EFX57172.1| RgfB protein [Streptococcus sp. C300]
Length = 271
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 23/106 (21%), Gaps = 2/106 (1%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ P ++AGDFN G + + S +
Sbjct: 168 LKELNKPLILAGDFNNPAGQEGYQAILASPLGLQDAFEVAK--ERSGSYTVPPEIDGWKG 225
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ S ++S H L ++
Sbjct: 226 NTEPLRIDYVFTTKELEVESLQVVFDGQNSPQVSDHYGLNAVLTWK 271
>gi|159042976|ref|YP_001531770.1| endonuclease/exonuclease/phosphatase [Dinoroseobacter shibae DFL
12]
gi|157910736|gb|ABV92169.1| endonuclease/exonuclease/phosphatase [Dinoroseobacter shibae DFL
12]
Length = 236
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 26/112 (23%), Gaps = 22/112 (19%)
Query: 11 KWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+ +++ P +IAGDFN G L R
Sbjct: 137 AYIAEQLAALDQRPTIIAGDFNEWRERKGLE----------TLPDWLRTHSPGPTFPAGR 186
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + +++ + S H P+ +
Sbjct: 187 ---------PLLKLDKIAMSHDITLMDSVVVGDPAAKV-ASDHRPIWARFRL 228
>gi|94267118|ref|ZP_01290753.1| Endonuclease/exonuclease/phosphatase [delta proteobacterium MLMS-1]
gi|94269243|ref|ZP_01291411.1| Endonuclease/exonuclease/phosphatase [delta proteobacterium MLMS-1]
gi|94272682|ref|ZP_01292167.1| Endonuclease/exonuclease/phosphatase [delta proteobacterium MLMS-1]
gi|93450049|gb|EAT01420.1| Endonuclease/exonuclease/phosphatase [delta proteobacterium MLMS-1]
gi|93451292|gb|EAT02176.1| Endonuclease/exonuclease/phosphatase [delta proteobacterium MLMS-1]
gi|93452167|gb|EAT02834.1| Endonuclease/exonuclease/phosphatase [delta proteobacterium MLMS-1]
Length = 248
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 13/106 (12%), Positives = 24/106 (22%), Gaps = 11/106 (10%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++ P ++AGDFN N S
Sbjct: 153 AELDPAAPCIVAGDFNDWFTR------LAPMFTEIMGFRCATSHSHGFQNSFLTYPSFSP 206
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ I+ + + + S H P+ E +
Sbjct: 207 TGG----LDKIFLRGPLEIIKRRRCRMGISKL-ASDHLPVLAELEL 247
>gi|307546855|ref|YP_003899334.1| hypothetical protein HELO_4265 [Halomonas elongata DSM 2581]
gi|307218879|emb|CBV44149.1| K06896 [Halomonas elongata DSM 2581]
Length = 273
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 11/109 (10%), Positives = 33/109 (30%), Gaps = 21/109 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + ++ V+ GD N + + + F + + + + +
Sbjct: 170 DYLSELVQPLRHVVVMGDLNCTPDQLHAHERFRKSLP-------LHPVRPPLSYPSWQPR 222
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+LD+ ++ + ++ S H P+ I+
Sbjct: 223 RALDHILLSDSLQA--------------DRVEVLEHLFSDHLPVAIDIR 257
>gi|271502601|ref|YP_003335627.1| endonuclease/exonuclease/phosphatase [Dickeya dadantii Ech586]
gi|270346156|gb|ACZ78921.1| Endonuclease/exonuclease/phosphatase [Dickeya dadantii Ech586]
Length = 287
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 25/101 (24%), Gaps = 10/101 (9%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN--KSSLDYFVIDR 80
++ GD N +S V S + +
Sbjct: 193 MILMGDLNCLPDSDEYRHLV--GPVSPHHGRLVRHRGLMDAWVAAGQLESSGSTHPNVGG 250
Query: 81 DNKNFLIDNS--FSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ L+ S ++ ++ S H PL +E
Sbjct: 251 RIDHCLLTPSLGVTVRRCWVDTE----NQGSDHHPLWVELQ 287
>gi|224537589|ref|ZP_03678128.1| hypothetical protein BACCELL_02469 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520786|gb|EEF89891.1| hypothetical protein BACCELL_02469 [Bacteroides cellulosilyticus
DSM 14838]
Length = 370
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 12/111 (10%), Positives = 25/111 (22%), Gaps = 19/111 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + ++ GDFN S + ++ +
Sbjct: 272 QADSIAQEIAA--SRYPYIIVCGDFNDTPISYA-HRVIEKGLND------AFTKSGRGLG 322
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N L + + K S H P+
Sbjct: 323 ISYNQNKFYF------RIDNILASKNLKPYNCTVDRSI----KESDHYPIW 363
>gi|331266731|ref|YP_004326361.1| metal-dependent hydrolase superfamily protein [Streptococcus oralis
Uo5]
gi|326683403|emb|CBZ01021.1| metal-dependent hydrolase superfamily protein [Streptococcus oralis
Uo5]
Length = 271
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 23/106 (21%), Gaps = 2/106 (1%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ P ++AGDFN G + + S +
Sbjct: 168 LKELNKPLILAGDFNNPAGQEGYQAILASPLGLQDAFEVAK--ERSGSYTVPPEIDGWKG 225
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ S ++S H L ++
Sbjct: 226 NTEPLRIDYVFTTKELEVESLQVVFDGQNSPQVSDHYGLNAVLTWK 271
>gi|313886230|ref|ZP_07819959.1| endonuclease/exonuclease/phosphatase family protein [Porphyromonas
asaccharolytica PR426713P-I]
gi|312924301|gb|EFR35081.1| endonuclease/exonuclease/phosphatase family protein [Porphyromonas
asaccharolytica PR426713P-I]
Length = 390
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 18/119 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q E + + D + +I GDFN S L
Sbjct: 290 AKQVEQI--YQDVNYQESPYVLICGDFNDTPISYTHHRL-------STGLHDAIATTGRG 340
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
N KS +I + L + + +S H P+ + +
Sbjct: 341 VNYSYYFKS-----LIGVRIDHMLYSDHIEARAAYVDRTAE----ISDHKPIICYFKLK 390
>gi|299144741|ref|ZP_07037809.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_23]
gi|298515232|gb|EFI39113.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_23]
Length = 611
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 17/99 (17%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P +AGD N + S + K I E + ID
Sbjct: 167 KPLFLAGDMNAEPESD------FIKELQKDFQILSNPE-------KHTYPAPAPKETIDY 213
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F+++S + S H P+ +E
Sbjct: 214 IAASKQNATGFAVISARVVNEP----MASDHRPILVELR 248
>gi|225558980|gb|EEH07263.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Ajellomyces capsulatus G186AR]
Length = 675
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 27/125 (21%), Gaps = 25/125 (20%)
Query: 22 PFVIAGDFNRKINS---------------IGDTDDFWQKMDPDGLLIRFP-------QEK 59
P +I GDFN S + + G+ F +
Sbjct: 526 PLIICGDFNSYPGSAVHELMSRGRLIEDHPDLEKRLYGNLSRVGMSYPFNLKSAYGAIGE 585
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCPLTIE 117
N +DY + Y S H L E
Sbjct: 586 LDFTNYTPDFADVIDYIWYTSNALQVTGLLGAVDKEYLQRVPGFPNY-HFPSDHLALMAE 644
Query: 118 YDFEK 122
+ F+
Sbjct: 645 FSFKS 649
>gi|149248308|ref|XP_001528541.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448495|gb|EDK42883.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 503
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 9/89 (10%), Positives = 23/89 (25%), Gaps = 3/89 (3%)
Query: 32 KINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF 91
+ + +++ + D + ++ S + D
Sbjct: 295 WHSLLPESEKMNNQFLYDTTRYIQGRRRKMYTVWNTLTSSRQINYGSRIDLILCNSHEMV 354
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+S S HCP+ ++D
Sbjct: 355 KSISNADIWPFILG---SDHCPVFTDFDL 380
>gi|288801511|ref|ZP_06406963.1| endonuclease/Exonuclease/phosphatase [Prevotella sp. oral taxon 299
str. F0039]
gi|288331592|gb|EFC70078.1| endonuclease/Exonuclease/phosphatase [Prevotella sp. oral taxon 299
str. F0039]
Length = 314
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 15/116 (12%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
I GDFN + ++ + ++ + K SLD+ +
Sbjct: 200 NPNIAILGDFNDYVGNLSLEMLSNNGLFDISANVKGLNGTK-GTYKYKGEWDSLDHIFVS 258
Query: 80 RDNKNFLIDNSFSIVSYD-QSDLDTRRSKL-------------STHCPLTIEYDFE 121
+ + +D + + +D + S H PL ++F+
Sbjct: 259 EPLRKYWLDCFINDADFLLCNDEKYGGKQPFRCYIGAKYHEGYSDHLPLVAHFEFK 314
>gi|260584082|ref|ZP_05851830.1| RgfB protein [Granulicatella elegans ATCC 700633]
gi|260158708|gb|EEW93776.1| RgfB protein [Granulicatella elegans ATCC 700633]
Length = 271
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 12/102 (11%), Positives = 25/102 (24%), Gaps = 2/102 (1%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
P ++AGDFN G + ++S +
Sbjct: 172 NKPLLLAGDFNNPAGQEGYQAILASPLGLQDAFEVAK--EKSGSYTVPPEIDGWKGNTEP 229
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
I + ++S H L + +++
Sbjct: 230 LRIDYVFTTKELEIENLHVVFDGNHSPQVSDHFGLNAQLNWK 271
>gi|240273218|gb|EER36740.1| SacI domain and endonuclease/exonuclease/phosphatase [Ajellomyces
capsulatus H143]
Length = 1241
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 19/126 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQ 57
++ I+ + GDFN +I D D +M + +
Sbjct: 787 NRSIEDHDTIIWLGDFNYRIGLPDDTVRGLIKAGDFESLYSHDQLNLQMVAGLTFPFYSE 846
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLT 115
+ + + + D + + + + L+ + L S H P+
Sbjct: 847 ARITFP-PTYKYDNGTDQYDTSEKARTPAWCDRILWKGANIRLLEYNAAPLKFSDHRPVY 905
Query: 116 IEYDFE 121
+D E
Sbjct: 906 ATFDCE 911
>gi|223996013|ref|XP_002287680.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976796|gb|EED95123.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 453
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 11/106 (10%), Positives = 26/106 (24%), Gaps = 6/106 (5%)
Query: 20 GIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
G ++ GDFN + ++ + + N
Sbjct: 185 GNNIILLGDFNMRKAEDKPTEGLVGGGWMDAWKVVTNSDKSRNFTWNSHDNLYHGPDNFQ 244
Query: 79 DRDNKNFLIDNSFSIVSYD-----QSDLDTRRSKLSTHCPLTIEYD 119
+ + + + ++ + LS H L + D
Sbjct: 245 FTCRFDRCYARGAKLALREFQLIGNNTVEGKGDYLSDHFGLAVRLD 290
>gi|332669377|ref|YP_004452385.1| endonuclease/exonuclease/phosphatase [Cellulomonas fimi ATCC 484]
gi|332338415|gb|AEE44998.1| Endonuclease/exonuclease/phosphatase [Cellulomonas fimi ATCC 484]
Length = 220
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 20/117 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L + P V+ GD N + W ++ +
Sbjct: 118 AQHLELLLRHLAA--APPAPRVVLGDLNEPPD-----GPAWHRLLEGLVDAC-------- 162
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ L+D S ++ S D D + S H PL ++ +
Sbjct: 163 ----PDGPPTYPAVDASLRIDAVLVDPSLTVRSAAVHDDDLV-LRASDHRPLVVDVE 214
>gi|296209068|ref|XP_002751376.1| PREDICTED: endonuclease/exonuclease/phosphatase family
domain-containing protein 1 [Callithrix jacchus]
Length = 565
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 14/113 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ +K +I GDF + +S + +Q + P +
Sbjct: 429 LQETLKGEKDVIILGDFGQGPDSNDYDILRKEKFQPLIPAHTFTNISTKNPQGSKS---- 484
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEY 118
LD I + K + + + D + S HCP+ E
Sbjct: 485 ---LDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEL 534
>gi|227540021|ref|ZP_03970070.1| endonuclease/exonuclease/phosphatase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227240299|gb|EEI90314.1| endonuclease/exonuclease/phosphatase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 347
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 18/112 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNR-KINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
AD K+ +P ++ GD N + + ++ F I R
Sbjct: 228 ADMARKSRLPVIVCGDLNDVAWSYTTELFLKMSQLLDPRRGRFFM-NTFHAHYPILRFP- 285
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
LD+ D K + + +YD S H P+ FE
Sbjct: 286 -LDHIFCSTDFKLVCMK---RLHNYD-----------SDHFPIFTHLQFENS 322
>gi|169625455|ref|XP_001806131.1| hypothetical protein SNOG_16000 [Phaeosphaeria nodorum SN15]
gi|160705657|gb|EAT76579.2| hypothetical protein SNOG_16000 [Phaeosphaeria nodorum SN15]
Length = 890
Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats.
Identities = 12/120 (10%), Positives = 25/120 (20%), Gaps = 8/120 (6%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINS---IGDTDDF--WQKMDPDGLLIRFPQEKE 60
+ + + +I GDFN + + + I +
Sbjct: 60 AADIDELIEACRDKTYAHIIIGDFNLRHKDWEGPTCRNPHPEANTLVQKAGAIGMTCVNK 119
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + + S S H P+ + D
Sbjct: 120 PGHFTYSRGEFKTPGNEYKSVIDLAFVSTLLVGHA---SHDVLDGVFDSDHRPIRVTLDL 176
>gi|187729939|ref|YP_001853833.1| endonuclease/exonuclease/phosphatase [Vibrio tapetis]
gi|182894498|gb|ACB99663.1| putative exported nuclease [Vibrio tapetis]
Length = 287
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 32/123 (26%), Gaps = 10/123 (8%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ ++Q L+ +I GD N S D + +
Sbjct: 173 LRAEQVRTLQTKFSSWQFKNALPIIVGDLNLPPQSTEYLDLTA-WFNDTDK-------EL 224
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSF-SIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+DY + K + + + S +S H PL +E
Sbjct: 225 KYTAPSWNPDRKIDYILTSNAQKWDIKEVYIPKPSDRATPESKPYAS-VSDHLPLLVEMK 283
Query: 120 FEK 122
+
Sbjct: 284 LTE 286
>gi|83718560|ref|YP_442749.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
thailandensis E264]
gi|257138960|ref|ZP_05587222.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
thailandensis E264]
gi|83652385|gb|ABC36448.1| endonuclease/exonuclease/phosphatase family superfamily
[Burkholderia thailandensis E264]
Length = 286
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ +
Sbjct: 184 ARAADAIVCGDFNSAYRSEAYRRFLAPFPDAPRFVDAWLARHPGKTPPMTAGVYDTGQWS 243
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F+ D +S + D ++ S H P+ +E
Sbjct: 244 EGPMTCDFAFVTDTLAHRISRCEID---GATRASDHQPIVLELS 284
>gi|332663074|ref|YP_004445862.1| endonuclease/exonuclease/phosphatase [Haliscomenobacter hydrossis
DSM 1100]
gi|332331888|gb|AEE48989.1| Endonuclease/exonuclease/phosphatase [Haliscomenobacter hydrossis
DSM 1100]
Length = 361
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 15/129 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDG-----------L 51
QQ E+L+ A + + G + GD+N + D F + P G
Sbjct: 235 RQQEEFLRDLALAEYQKGNFVIAGGDWNTCPPFLP-HDVFMKGKAPKGEEGQNMNPALFP 293
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ ++ FL+ + + ++ + S H
Sbjct: 294 ADWHWIYDPTVPTNRNNDQPYQAKKTFVTLIDYFLVSPNVKVRKVK---GISQEFRFSDH 350
Query: 112 CPLTIEYDF 120
+ +E +
Sbjct: 351 QAVWMEVEL 359
>gi|325089246|gb|EGC42556.1| SacI domain-containing protein [Ajellomyces capsulatus H88]
Length = 1241
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 19/126 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQ 57
++ I+ + GDFN +I D D +M + +
Sbjct: 787 NRSIEDHDTIIWLGDFNYRIGLPDDTVRGLIKAGDFESLYSHDQLNLQMVAGLTFPFYSE 846
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLT 115
+ + + + D + + + + L+ + L S H P+
Sbjct: 847 ARITFP-PTYKYDNGTDQYDTSEKARTPAWCDRILWKGANIRLLEYNAAPLKFSDHRPVY 905
Query: 116 IEYDFE 121
+D E
Sbjct: 906 ATFDCE 911
>gi|239832679|ref|ZP_04681008.1| endonuclease/exonuclease/phosphatase [Ochrobactrum intermedium LMG
3301]
gi|239824946|gb|EEQ96514.1| endonuclease/exonuclease/phosphatase [Ochrobactrum intermedium LMG
3301]
Length = 285
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 28/121 (23%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + + +P ++ GD N + + +
Sbjct: 167 EQQAESILTVLQE--ADTLPTLLIGDLN-------EWRVGKRSSLAALMPTFNHVATAVP 217
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L + S + + R S H P+ D +
Sbjct: 218 SFPSR---------FPVFALDRVLGAPHNLVTSVEVHNTPLARL-ASDHLPVKAHLDLKS 267
Query: 123 G 123
Sbjct: 268 A 268
>gi|21283669|ref|NP_646757.1| truncated beta-hemplysin [Staphylococcus aureus subsp. aureus MW2]
gi|87160283|ref|YP_494624.1| truncated beta-hemolysin [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195913|ref|YP_500724.1| truncated beta-hemolysin [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|151222138|ref|YP_001332960.1| truncated beta-hemolysin [Staphylococcus aureus subsp. aureus str.
Newman]
gi|221140348|ref|ZP_03564841.1| phospholipase C [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|253315026|ref|ZP_04838239.1| phospholipase C [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|258422838|ref|ZP_05685739.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A9635]
gi|258434311|ref|ZP_05688712.1| beta-hemplysin [Staphylococcus aureus A9299]
gi|258444471|ref|ZP_05692804.1| beta-hemplysin [Staphylococcus aureus A8115]
gi|258452367|ref|ZP_05700377.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A5948]
gi|269203658|ref|YP_003282927.1| truncated beta hemolysin [Staphylococcus aureus subsp. aureus ED98]
gi|282925003|ref|ZP_06332668.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A9765]
gi|294849557|ref|ZP_06790299.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A9754]
gi|296277053|ref|ZP_06859560.1| phospholipase C [Staphylococcus aureus subsp. aureus MR1]
gi|300912910|ref|ZP_07130348.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus TCH70]
gi|304379191|ref|ZP_07361934.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|21205110|dbj|BAB95805.1| truncated beta-hemplysin [Staphylococcus aureus subsp. aureus MW2]
gi|87126257|gb|ABD20771.1| truncated beta-hemolysin [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203471|gb|ABD31281.1| truncated beta-hemolysin [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|150374938|dbj|BAF68198.1| truncated beta-hemolysin [Staphylococcus aureus subsp. aureus str.
Newman]
gi|257847000|gb|EEV71013.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A9635]
gi|257849259|gb|EEV73240.1| beta-hemplysin [Staphylococcus aureus A9299]
gi|257850362|gb|EEV74311.1| beta-hemplysin [Staphylococcus aureus A8115]
gi|257859954|gb|EEV82792.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A5948]
gi|262075948|gb|ACY11921.1| truncated beta hemolysin [Staphylococcus aureus subsp. aureus ED98]
gi|282592697|gb|EFB97704.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A9765]
gi|294823694|gb|EFG40121.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A9754]
gi|300885688|gb|EFK80895.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus TCH70]
gi|302333671|gb|ADL23864.1| phospholipase C [Staphylococcus aureus subsp. aureus JKD6159]
gi|302751900|gb|ADL66077.1| phospholipase C [Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304342237|gb|EFM08133.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|315196779|gb|EFU27124.1| phospholipase C [Staphylococcus aureus subsp. aureus CGS01]
gi|320139613|gb|EFW31482.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320143656|gb|EFW35434.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus MRSA177]
gi|329314681|gb|AEB89094.1| Sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus T0131]
gi|329724930|gb|EGG61432.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus 21189]
Length = 274
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 143 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 202
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 203 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 262
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 263 FSDHYPIKA 271
>gi|333031155|ref|ZP_08459216.1| Endonuclease/exonuclease/phosphatase [Bacteroides coprosuis DSM
18011]
gi|332741752|gb|EGJ72234.1| Endonuclease/exonuclease/phosphatase [Bacteroides coprosuis DSM
18011]
Length = 276
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 13/104 (12%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
G +AGD N K + + + K +DY
Sbjct: 186 KGKSIYLAGDLNEKKLDTPFFLKLKKYWN--------IESSNKNTYPTPTAKERIDYI-- 235
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
++ + + + S +S H P+ ++ K
Sbjct: 236 ---ISYKGESSNLTGTDVVRKMKEVNVSSISDHYPVFCDFSLSK 276
>gi|320538886|ref|ZP_08038562.1| hypothetical protein SSYM_0500 [Serratia symbiotica str. Tucson]
gi|320031046|gb|EFW13049.1| hypothetical protein SSYM_0500 [Serratia symbiotica str. Tucson]
Length = 258
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 21/105 (20%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q + P ++AGDFN ++++ +E R K+
Sbjct: 172 EQIVNHQGPVIMAGDFNA---------WNRKRINALYEFASGMALREVNFIDDYRRKAFG 222
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ +S S S H PL +E+
Sbjct: 223 RPLDFVFYRDLRVVKSSVLETSA------------SDHNPLLVEF 255
>gi|313139689|ref|ZP_07801882.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313132199|gb|EFR49816.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 371
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 25/110 (22%), Gaps = 13/110 (11%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L + A + + G +V GDFN + + + + +
Sbjct: 272 LDELASMRSREGSRYVFMGDFNATTDHTPFRNILGNRFSDAAR---QSGHGFTFTWPSNK 328
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ +I + S S H L
Sbjct: 329 LPLPRFAGIDHIVLDKDIIAGQMQVKSVA----------GSDHAALLATI 368
>gi|265766011|ref|ZP_06094052.1| endonuclease/exonuclease/phosphatase family [Bacteroides sp.
2_1_16]
gi|263253679|gb|EEZ25144.1| endonuclease/exonuclease/phosphatase family [Bacteroides sp.
2_1_16]
Length = 344
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 16/145 (11%), Positives = 34/145 (23%), Gaps = 31/145 (21%)
Query: 6 GEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ------ 57
+ LK AD I + +I GDFN
Sbjct: 194 AQKLKDAADSLINVRPSAKLIIMGDFNDYPTDKSVVQVLQALSPEVSTHHDRLYHLLARK 253
Query: 58 --EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT------------ 103
++ + LD+ ++ + + + L
Sbjct: 254 AKDRNFGSYKYQGEWGLLDHLIVSGTLLDISGTLFTEEKKANVARLPFLLTKDEKYGGMQ 313
Query: 104 ---------RRSKLSTHCPLTIEYD 119
+ S H P+ ++++
Sbjct: 314 PFRTYVGMKYQEGYSDHLPVYVDFE 338
>gi|189237783|ref|XP_976374.2| PREDICTED: similar to 2-phosphodiesterase [Tribolium castaneum]
Length = 556
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 31/114 (27%), Gaps = 16/114 (14%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPD---------------GLLIRFPQEKESTCNVI 66
++ GDFN S + D ++ + N
Sbjct: 441 RVILCGDFNSVPTSTVYEFLTKGNLSRDNKVFEKTVNNVNLRHDFQLQSACGSPTYTNYT 500
Query: 67 KRNKSSLDYFVIDRD-NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ LDY I++D + + + + S H L ++ +
Sbjct: 501 DDFRGCLDYIFIEKDKMRVCNVVPFPKNEDLEAFEGLPNEVYPSDHLALVVDLE 554
>gi|197120655|ref|YP_002132606.1| endonuclease/exonuclease/phosphatase [Anaeromyxobacter sp. K]
gi|196170504|gb|ACG71477.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter sp. K]
Length = 389
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 25/103 (24%), Gaps = 6/103 (5%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID- 79
P V+ GD N + + G+ + + C D D
Sbjct: 276 RPVVLVGDLNSQPGTEGEAVLAAAGFRDVWAAVEGDAPGLTCCFPEDLRIGPGDPGFADL 335
Query: 80 -RDNKNFLIDNSFSIVSYDQ----SDLDTRRSKLSTHCPLTIE 117
L+ S + +D S H + E
Sbjct: 336 STRIDYVLVRGPVEPWSAEVVGETADERVGGLWPSDHAGVAAE 378
>gi|158522340|ref|YP_001530210.1| endonuclease/exonuclease/phosphatase [Desulfococcus oleovorans
Hxd3]
gi|158511166|gb|ABW68133.1| Endonuclease/exonuclease/phosphatase [Desulfococcus oleovorans
Hxd3]
Length = 248
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 28/102 (27%), Gaps = 20/102 (19%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
G P ++ GDFN S + GL+ + + R
Sbjct: 167 GKPVIVGGDFNAFAGSRE----LAGFLSATGLVSANAANVRTFPSKRPR----------- 211
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ +D+ + S H PL ++ +
Sbjct: 212 WELDYIFHSRQVR-----VNDMHAPSVRFSDHLPLVCDFTIK 248
>gi|148268477|ref|YP_001247420.1| phospholipase C [Staphylococcus aureus subsp. aureus JH9]
gi|150394540|ref|YP_001317215.1| phospholipase C [Staphylococcus aureus subsp. aureus JH1]
gi|257793277|ref|ZP_05642256.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A9781]
gi|258413680|ref|ZP_05681954.1| beta-hemolysin [Staphylococcus aureus A9763]
gi|258419786|ref|ZP_05682749.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A9719]
gi|258447831|ref|ZP_05695966.1| beta-hemplysin [Staphylococcus aureus A6224]
gi|258454465|ref|ZP_05702432.1| beta-hemplysin [Staphylococcus aureus A5937]
gi|282928805|ref|ZP_06336398.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A10102]
gi|295407331|ref|ZP_06817129.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A8819]
gi|297246410|ref|ZP_06930252.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A8796]
gi|147741546|gb|ABQ49844.1| Phospholipase C [Staphylococcus aureus subsp. aureus JH9]
gi|149946992|gb|ABR52928.1| Phospholipase C [Staphylococcus aureus subsp. aureus JH1]
gi|257787249|gb|EEV25589.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A9781]
gi|257839633|gb|EEV64103.1| beta-hemolysin [Staphylococcus aureus A9763]
gi|257844197|gb|EEV68583.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A9719]
gi|257858928|gb|EEV81796.1| beta-hemplysin [Staphylococcus aureus A6224]
gi|257863322|gb|EEV86083.1| beta-hemplysin [Staphylococcus aureus A5937]
gi|282589540|gb|EFB94628.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A10102]
gi|294967776|gb|EFG43807.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A8819]
gi|297176681|gb|EFH35942.1| sphingomyelin phosphodiesterase [Staphylococcus aureus A8796]
gi|312830376|emb|CBX35218.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus ECT-R 2]
gi|315128689|gb|EFT84691.1| phospholipase C [Staphylococcus aureus subsp. aureus CGS03]
Length = 274
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 143 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 202
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 203 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 262
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 263 FSDHYPIKA 271
>gi|313206031|ref|YP_004045208.1| endonuclease/exonuclease/phosphatase [Riemerella anatipestifer DSM
15868]
gi|312445347|gb|ADQ81702.1| Endonuclease/exonuclease/phosphatase [Riemerella anatipestifer DSM
15868]
Length = 308
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 26/122 (21%), Gaps = 19/122 (15%)
Query: 17 IKTGIPFVIAGDFNRKINSIGD-------------TDDFWQKMDPDGLLIRFPQEKESTC 63
IK ++ GDFN N + F +E
Sbjct: 182 IKDKEAVLVLGDFNENPNEDNLIQFTYHEGILELLHNPFSALYYLGDYSTYHKKEGLLFD 241
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS------YDQSDLDTRRSKLSTHCPLTIE 117
++ F + + S H P+ +E
Sbjct: 242 QIMFSRDFFQTSFGLTYKKAEVFNPTEIKNWDKMKNRPFRTYSGTRYLGGYSDHFPVLVE 301
Query: 118 YD 119
++
Sbjct: 302 FE 303
>gi|302543866|ref|ZP_07296208.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
53653]
gi|302461484|gb|EFL24577.1| putative integral membrane protein [Streptomyces himastatinicus
ATCC 53653]
Length = 345
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 31/113 (27%), Gaps = 16/113 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
L+ +A + P +IAGDFN + D M +
Sbjct: 246 RLRTYAAGR--GDQPTLIAGDFNATQDHAAFRDLLDTGMRDSARATGVSRTPSWPSTTTP 303
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +D+ ++ + + + H L ++ D
Sbjct: 304 VLGAQIDHVLVSDALRPR--------------TARFLDLRNTDHRALLVDLDL 342
>gi|239831464|ref|ZP_04679793.1| endonuclease/exonuclease/phosphatase [Ochrobactrum intermedium LMG
3301]
gi|239823731|gb|EEQ95299.1| endonuclease/exonuclease/phosphatase [Ochrobactrum intermedium LMG
3301]
Length = 341
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 14/110 (12%)
Query: 11 KWADQKIKT-GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
++ + +++ P +IAGDFN S + +
Sbjct: 225 RYIEPELQKLNGPMIIAGDFNAAPWSNAVRRVEYASGTRHL--------TGIGGTWMTHL 276
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I L+ + + +R S H P+ +++
Sbjct: 277 LPVSLSPYIGLPIDQILVSPEIGG-----ARVSSREDAGSDHLPVRLDFS 321
>gi|282917354|ref|ZP_06325109.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus D139]
gi|283771169|ref|ZP_06344060.1| phospholipase C [Staphylococcus aureus subsp. aureus H19]
gi|282318981|gb|EFB49336.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus D139]
gi|283459763|gb|EFC06854.1| phospholipase C [Staphylococcus aureus subsp. aureus H19]
Length = 274
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 143 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 202
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 203 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 262
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 263 FSDHYPIKA 271
>gi|229171459|ref|ZP_04299043.1| Sphingomyelinase C [Bacillus cereus MM3]
gi|228611997|gb|EEK69235.1| Sphingomyelinase C [Bacillus cereus MM3]
Length = 333
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 198 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKEYTY 317
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDY-SDHYPVEATISMK 333
>gi|228473947|ref|ZP_04058688.1| endonuclease/exonuclease/phosphatase [Capnocytophaga gingivalis
ATCC 33624]
gi|228274461|gb|EEK13302.1| endonuclease/exonuclease/phosphatase [Capnocytophaga gingivalis
ATCC 33624]
Length = 343
Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 32/114 (28%), Gaps = 19/114 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E AD P V+ GDFN S +QK GL+ F +
Sbjct: 245 QVELFNAHAD---SCPYPIVVCGDFNNTAFSY-----LYQKFQDRGLVDSFEEAGSGFGR 296
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
D+ L D F I S+ S H P+
Sbjct: 297 TY-------DFPYFPFRIDYILADPYFKITSHKVYTGRDY----SDHFPIRATL 339
>gi|328946822|gb|EGG40959.1| RgfB protein [Streptococcus sanguinis SK1087]
Length = 271
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K ++ +K P V+ GDFN + G + +
Sbjct: 159 QGEW-AKLEEELLKVKTPLVLMGDFNNPVGQQGYQTILASPLKLQDSHAVAREAIGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + +S H L ++
Sbjct: 218 --EGTIAGWDDNKHALKIDYVFTSQGMDVERSAVVFDGKETPVVSDHFGLEVQVTL 271
>gi|327405504|ref|YP_004346342.1| Endonuclease/exonuclease/phosphatase [Fluviicola taffensis DSM
16823]
gi|327321012|gb|AEA45504.1| Endonuclease/exonuclease/phosphatase [Fluviicola taffensis DSM
16823]
Length = 375
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 21/112 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q E + + + P VI GDFN S + F + +E ++
Sbjct: 276 AEQAERVVEHLKT---SPYPVVICGDFNDTPMS-YVYNQFNSDLVDS------FRETQTG 325
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ V V++ + S H +
Sbjct: 326 IGITY------VGRVPAGRIDYIFHSGDLGAVNFQIQAVPY-----SDHRAV 366
>gi|323350990|ref|ZP_08086647.1| RgfB protein [Streptococcus sanguinis VMC66]
gi|322122714|gb|EFX94423.1| RgfB protein [Streptococcus sanguinis VMC66]
Length = 271
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K ++ +K P V+ GDFN + G + +
Sbjct: 159 QGEW-AKLEEELLKVKTPLVLMGDFNNPVGQQGYQTILASPLKLQDSHAVAREAIGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + +S H L ++
Sbjct: 218 --EGTIAGWDDNKHALKIDYVFTSQGMDVERSAVVFDGKETPVVSDHFGLEVQVTL 271
>gi|241759740|ref|ZP_04757840.1| endonuclease/exonuclease/phosphatase [Neisseria flavescens SK114]
gi|241319748|gb|EER56144.1| endonuclease/exonuclease/phosphatase [Neisseria flavescens SK114]
Length = 261
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 14/114 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + + + I+ P +IAGDFN W++ L +
Sbjct: 147 KQYRAISDYVGRYIRPESPLIIAGDFND-----------WRQKSARELGRALDLNEVFVD 195
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
N KR K+ + + + + + ++ + + LS H PL++
Sbjct: 196 NTGKRPKTF--PSRLPILSLDRIYTRNLDVIDSEIHNSK-DWQHLSDHLPLSVT 246
>gi|154507793|ref|ZP_02043435.1| hypothetical protein ACTODO_00275 [Actinomyces odontolyticus ATCC
17982]
gi|153797427|gb|EDN79847.1| hypothetical protein ACTODO_00275 [Actinomyces odontolyticus ATCC
17982]
Length = 801
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 35/131 (26%), Gaps = 24/131 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L +A + P ++ GDFN + ++ G +
Sbjct: 580 QAGALASFAARF--ADKPTLLVGDFNSYSQEDPI-----KALEAAGWERVSGAGEA--SY 630
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------------SKLS 109
V SLD+ + K L + ++ +S + S
Sbjct: 631 VYAGRSGSLDHVFANAAAKPLLAGVTSWAINAQESIAFEYSRAGMNAHLAVEADNPYRSS 690
Query: 110 THCPLTIEYDF 120
H P I
Sbjct: 691 DHNPEIIGLTL 701
>gi|19421839|gb|AAL87740.1|AF320511_1 sphingomyelinase-like protein 1 [Leptospira interrogans]
Length = 648
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 37/121 (30%), Gaps = 10/121 (8%)
Query: 5 QGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR--FPQEKES 61
Q + ++ + + I +I GD N S D + + + F + ++
Sbjct: 342 QFDDIRNFIYSKNIPKDETVLIVGDLNVIKESNEYYDMISRLNVNEPRYVGVPFTWDAKT 401
Query: 62 TCNVIKRNKS----SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL---STHCPL 114
++ LDY + + + + + + + S H P+
Sbjct: 402 NEIAAYYYENEEPVYLDYIFVSKSHAQPPVWQNLAYDPVSKHTWTVSGYTSDEFSDHYPI 461
Query: 115 T 115
Sbjct: 462 Y 462
>gi|83950985|ref|ZP_00959718.1| hypothetical protein ISM_07785 [Roseovarius nubinhibens ISM]
gi|83838884|gb|EAP78180.1| hypothetical protein ISM_07785 [Roseovarius nubinhibens ISM]
Length = 327
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 31/114 (27%), Gaps = 2/114 (1%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + D G P VI GD N + D D + + + + + +
Sbjct: 215 QFLQLLERVD-YFARGCPIVIGGDLNTGNHMPPDFDWRQETLFDLACALGYSWQGSAPGQ 273
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + + + S L+ LS H +
Sbjct: 274 TT-RPSLITPHPDRTMRLDWIATRDCSPVEQGILSALNPDGRPLSDHDCVWCRL 326
>gi|304391176|ref|ZP_07373120.1| endonuclease/exonuclease/phosphatase [Ahrensia sp. R2A130]
gi|303296532|gb|EFL90888.1| endonuclease/exonuclease/phosphatase [Ahrensia sp. R2A130]
Length = 254
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 15/115 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q D + G V+ GD N +S ++ L+ E T
Sbjct: 155 QAHCFADLIDVVHREGERLVVCGDLNVCPDSETLR-ILQSRLGLTELVTSRGFETTRT-- 211
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
Y +R ++++ ++ ++D +S H L +E
Sbjct: 212 --------ALYLKPERFADYMFVNDAVTVAAFDVLTQPE----VSDHATLVLELS 254
>gi|289641584|ref|ZP_06473745.1| endonuclease/exonuclease/phosphatase [Frankia symbiont of Datisca
glomerata]
gi|289508565|gb|EFD29503.1| endonuclease/exonuclease/phosphatase [Frankia symbiont of Datisca
glomerata]
Length = 85
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 13/97 (13%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++AGDFN + F + +D + ++
Sbjct: 1 MLAGDFNATRD----HRPFARLLDE----RLRDAHDVAGAGWAPTWNANHLALPPLLRID 52
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ L F++ Y S H PL ++
Sbjct: 53 HVLASPQFAVTGYQV-----GNKIGSDHKPLVVDLAL 84
>gi|283779701|ref|YP_003370456.1| endonuclease/exonuclease/phosphatase [Pirellula staleyi DSM 6068]
gi|283438154|gb|ADB16596.1| Endonuclease/exonuclease/phosphatase [Pirellula staleyi DSM 6068]
Length = 336
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 37/147 (25%), Gaps = 27/147 (18%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFN--------RKINSIGDTDDFWQKMDPDGLL 52
+ ++QG +KW + KI G +I GD N + IG D L
Sbjct: 186 IRTRQGRLARKWMNDKILAGENVIIMGDLNTNDLWNNLAPDSDIGVIRGLDTPSTDDDLF 245
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVID------------------RDNKNFLIDNSFSIV 94
KE K + +
Sbjct: 246 DTLSAVKEENPYTHLIFKQFDRILLSPSLTKDAPGKKDLVFKSATIRRDLVVNGKEQDTE 305
Query: 95 SYDQSDLDTRRSK-LSTHCPLTIEYDF 120
+ + S H PL E++F
Sbjct: 306 HREIYWKIAEAERDFSDHYPLVTEFEF 332
>gi|229365908|gb|ACQ57934.1| Deoxyribonuclease gamma precursor [Anoplopoma fimbria]
Length = 324
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 2/101 (1%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GDF + D ++ D + T + + S V
Sbjct: 161 DNIMILGDFKADGVYVTDNKMKDIRIRSDKNFHWLIGDDVDTTSNTANHYSYDRIVVYGE 220
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEYD 119
D + L+ NS ++ + + T ++S H P+ +E
Sbjct: 221 DMLSALVPNSAKPFNFHKEFVMTEEKALRVSDHYPVEVELR 261
>gi|226311672|ref|YP_002771566.1| hypothetical protein BBR47_20850 [Brevibacillus brevis NBRC 100599]
gi|226094620|dbj|BAH43062.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 226
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 30/121 (24%), Gaps = 27/121 (22%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + Q K P ++ GDFN + S
Sbjct: 130 QLQLMSTLIQQHAKA--PLLLMGDFNAS--------------NVSFTPHLMDCALVSGQE 173
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ + ++I Y+ ++ S H P+ + +
Sbjct: 174 KKPTLPAFRR------RLDYIFASHHWNIEHYELLPVNW-----SDHVPVIADLRLTESP 222
Query: 125 V 125
V
Sbjct: 223 V 223
>gi|194292124|ref|YP_002008031.1| endonuclease/exonuclease/phosphatase [Cupriavidus taiwanensis LMG
19424]
gi|193226028|emb|CAQ71975.1| putative endonuclease/exonuclease/phosphatase [Cupriavidus
taiwanensis LMG 19424]
Length = 293
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 31/121 (25%), Gaps = 21/121 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L + +P ++ GD N + F L F +
Sbjct: 175 RHQVQQLLNYVAT--APPLPTILLGDVN---------EWFLWGRPLRWLHAYFEHTPHTA 223
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + +VS R S H PL ++ +
Sbjct: 224 TFPSR---------LPVFALDRIWVSPRAHLVSVASHRSPLARV-ASDHLPLVACFEVPE 273
Query: 123 G 123
G
Sbjct: 274 G 274
>gi|320160210|ref|YP_004173434.1| hypothetical protein ANT_08000 [Anaerolinea thermophila UNI-1]
gi|319994063|dbj|BAJ62834.1| hypothetical protein ANT_08000 [Anaerolinea thermophila UNI-1]
Length = 242
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 27/102 (26%), Gaps = 7/102 (6%)
Query: 24 VIAGDFNRKINSIG-----DTDDFWQKMDPDGL--LIRFPQEKESTCNVIKRNKSSLDYF 76
VI GDFN + + GL F ++S
Sbjct: 132 VILGDFNSNQRTAPRGRVGSHAVLAANLHTLGLISAYHFATGEKSGNETHPTFFHGRKTE 191
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ F+ + Q S HCP+ +E+
Sbjct: 192 QAGHIDYVFIPSRWIRRLKSVQVGNPGEWLAYSDHCPVMVEF 233
>gi|297160831|gb|ADI10543.1| hypothetical protein SBI_07423 [Streptomyces bingchenggensis BCW-1]
Length = 455
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 31/125 (24%), Gaps = 10/125 (8%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKIN--SIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L + G ++ GD N + D + D +
Sbjct: 186 ITQLSDFIAAN-SAGNAVIVMGDTNTRYTRAEDNIRDLTGRNGLTDAWVQLIRGGSAPPA 244
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNS----FSIVSYDQ---SDLDTRRSKLSTHCPLTI 116
L +S + Y+ LD LS H P T+
Sbjct: 245 GSDALVCDPDHVTNTCEVVDKILYRSSPLLTLTATRYNNEHPDFLDAAGEPLSDHYPHTV 304
Query: 117 EYDFE 121
++ ++
Sbjct: 305 DFSWK 309
>gi|323524486|ref|YP_004226639.1| endonuclease/exonuclease/phosphatase [Burkholderia sp. CCGE1001]
gi|323381488|gb|ADX53579.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. CCGE1001]
Length = 265
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 18/116 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ G P V+AGDFN N + + + + +
Sbjct: 166 RQMNWIAHWITKEAPDG-PLVLAGDFNDWRNDSV---PLFAEHGLQEVATLLGESGRTFP 221
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + V + Q +T LS H P
Sbjct: 222 ------------AFSPALALDKMFVRGMKPVEWIQPTQETAW--LSDHLPYMARLR 263
>gi|16759734|ref|NP_455351.1| hypothetical protein STY0848 [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29142493|ref|NP_805835.1| hypothetical protein t2075 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213161219|ref|ZP_03346929.1| hypothetical protein Salmoneentericaenterica_14750 [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213586700|ref|ZP_03368526.1| hypothetical protein SentesTyph_37640 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213647750|ref|ZP_03377803.1| hypothetical protein SentesTy_10972 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213855118|ref|ZP_03383358.1| hypothetical protein SentesT_13982 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289825286|ref|ZP_06544565.1| hypothetical protein Salmonellentericaenterica_07871 [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|25353375|pir||AB0599 conserved hypothetical protein ybhP [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16502027|emb|CAD05260.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138124|gb|AAO69695.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 252
Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 18/119 (15%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L W + + P ++AGDFN ++ GL +E
Sbjct: 150 RQAQLTMLAGWVNA-LPESEPVLVAGDFNDW------RQKAGPPLNAAGL-------EEI 195
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + + N+ S + LS H PL+ E
Sbjct: 196 FTRAHGRPARTFPVSMPLLRLDRIYVKNA--NASSPGALPLRNWRHLSDHAPLSAEIHL 252
>gi|332322210|emb|CCA66235.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1380
Score = 39.4 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 3/98 (3%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+ +P +I GDFN + S + + + + +R
Sbjct: 133 SKLPCLIIGDFNETLASNDRGSLAISQSGSNDFRQFVQSLQLTEIPTTERFTWFRGNS-- 190
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ + Y L LS HCPL +
Sbjct: 191 KSKLDRCFVNPEWLTH-YPTLKLSLLNRGLSDHCPLLL 227
>gi|90962461|ref|YP_536377.1| exodeoxyribonuclease III [Lactobacillus salivarius UCC118]
gi|301299216|ref|ZP_07205503.1| exodeoxyribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|90821655|gb|ABE00294.1| Exodeoxyribonuclease III [Lactobacillus salivarius UCC118]
gi|300853176|gb|EFK80773.1| exodeoxyribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 275
Score = 39.4 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 37/141 (26%), Gaps = 25/141 (17%)
Query: 2 LSQQGE---WLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQK----------- 45
L + E W +K+AD + P + +GDFN I
Sbjct: 136 LRRLAERQVWDEKYADYLVSLDQNKPLLSSGDFNVAHKEIDLAHPGNNHHSAGFTDEERA 195
Query: 46 -------MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ + + + + +L N +
Sbjct: 196 GFTNLLNKGFTDTFRYVHGDVKDVYSWWAQRSRTSKINNSGWRIDYWLASNRIADKIVRS 255
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
LD+ + H P+ +E +
Sbjct: 256 EMLDSGERR--DHTPIVLEIN 274
>gi|301095100|ref|XP_002896652.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108882|gb|EEY66934.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 806
Score = 39.4 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 24/140 (17%)
Query: 5 QGEWLKKWADQ-KIKTGIPFVIAGDFNRKINSIG----------------DTDDFWQKMD 47
Q ++ + + ++ P + AGD N ++ G + Q+
Sbjct: 667 QMTLMRNFVNSLRLPKHEPVIYAGDMNVNKHADGAQIPEGEYTGMLDLLGVDEPQLQEKS 726
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKN-FLIDNSFSIVSYDQSDLDTRRS 106
P + LDY ++DR ++ + ++ +R +
Sbjct: 727 PIYSFDPHSNDLAVDGPSSGGIAERLDYVMVDRSHRLPVSASTEIVQLKATKNWAPSRGA 786
Query: 107 ------KLSTHCPLTIEYDF 120
LS H P+ ++ F
Sbjct: 787 IDEILVDLSDHYPVVGDFHF 806
>gi|42523806|ref|NP_969186.1| hypothetical protein Bd2360 [Bdellovibrio bacteriovorus HD100]
gi|39576013|emb|CAE80179.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
Length = 395
Score = 39.4 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 30/133 (22%), Gaps = 17/133 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF-----PQ 57
QQ + + GD N + F P G + F
Sbjct: 232 RQQAAEFVAKLIKDKGPDTMVIAGGDLNITHEEESKENIFRDTFSPVGDVSHFVGCKECP 291
Query: 58 EKEST--CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + + + ++ YD+ L + L
Sbjct: 292 GTHNYRKSWSFLDAHIYSKALLEKGSGSYKMEPGTIDVIRYDEVHLKKGKYPLRWDYDRQ 351
Query: 109 ---STHCPLTIEY 118
+ H PL +
Sbjct: 352 IGVADHFPLYVRL 364
>gi|66827417|ref|XP_647063.1| hypothetical protein DDB_G0269098 [Dictyostelium discoideum AX4]
gi|60475202|gb|EAL73138.1| hypothetical protein DDB_G0269098 [Dictyostelium discoideum AX4]
Length = 1798
Score = 39.4 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 23/96 (23%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN N DD Q Q + +
Sbjct: 962 IIAGDFNCIHNDNSLLDDIIQSY--TYQHHLIDQGEFKNTPTHTHGNRLDRIYTQYNRID 1019
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + LS H P++ +
Sbjct: 1020 PENIYTQVHQIPSS----------LSDHNPISTTFS 1045
>gi|288554501|ref|YP_003426436.1| endonuclease/exonuclease/phosphatase [Bacillus pseudofirmus OF4]
gi|288545661|gb|ADC49544.1| endonuclease/exonuclease/phosphatase [Bacillus pseudofirmus OF4]
Length = 265
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 8/113 (7%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L ++I + GDFN N ++ + + +G F E
Sbjct: 156 QMDALL----EQIPADGRVFLMGDFN---NHADMRNEGYDYLIQNGFYDTFTLADEKDSG 208
Query: 65 VI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
V + + D L + ++ S R +S H +
Sbjct: 209 VTVEGKIAGWDQNKRGIRIDLILTNQKVNVFSSKVIFNGRNRDIVSDHFGVEA 261
>gi|282906344|ref|ZP_06314196.1| LOW QUALITY PROTEIN: sphingomyelin phosphodiesterase
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282330541|gb|EFB60058.1| LOW QUALITY PROTEIN: sphingomyelin phosphodiesterase
[Staphylococcus aureus subsp. aureus Btn1260]
Length = 282
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 151 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTEEFKDMLKNLNVNDVLYAGHNSTW 210
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 211 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 270
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 271 FSDHYPIKA 279
>gi|33594836|ref|NP_882479.1| putative endonuclease/exonuclease/phosphatase family protein
[Bordetella parapertussis 12822]
gi|33599108|ref|NP_886668.1| putative endonuclease/exonuclease/phosphatase family protein
[Bordetella bronchiseptica RB50]
gi|33564912|emb|CAE39857.1| putative endonuclease/exonuclease/phosphatase family protein
[Bordetella parapertussis]
gi|33575154|emb|CAE30617.1| putative endonuclease/exonuclease/phosphatase family protein
[Bordetella bronchiseptica RB50]
Length = 286
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 36/151 (23%), Gaps = 35/151 (23%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINS---------------------------- 35
+Q + L Q + G P +IAGDFN +
Sbjct: 138 RQIQALTDRIRQSVPDGAPLLIAGDFNDWGDRLAPMFVQQLGLYEVFSHAPRSHGGDLPR 197
Query: 36 -----IGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS 90
+ + +L R Q +
Sbjct: 198 LRDSVRRLGNVLRGVPNSVAVLERNNQLGMGGAYCPLPPPRTFPAVFPWFRLDRIYQR-G 256
Query: 91 FSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
F++ S ++LS H PL E +
Sbjct: 257 FAVRSARVLRG-REWARLSDHSPLLAELELP 286
>gi|332322157|emb|CCA66153.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1381
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 18/113 (15%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD--------FWQKMDPDGLLIRFPQEKESTCNVIKR 68
I + P+++ GDFN ++ ++ LI +
Sbjct: 130 ISSESPYLLIGDFNEVLDPSDRGSQIVSTNGIHAFKSFVQVLELIEITPTTGKFTWFRGQ 189
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+KS LD I + S++ + LS HCP+ ++ +
Sbjct: 190 SKSKLDRMFIHPQWLDLFPTLQISLL----------KRTLSDHCPILVQTKLK 232
>gi|288802726|ref|ZP_06408164.1| endonuclease/Exonuclease/phosphatase [Prevotella melaninogenica
D18]
gi|288334876|gb|EFC73313.1| endonuclease/Exonuclease/phosphatase [Prevotella melaninogenica
D18]
Length = 324
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 17/130 (13%)
Query: 6 GEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
E L D + ++ GDFN +S + + +
Sbjct: 195 MEQLCNVIDSLRRQYVEPKLLVMGDFNDYADSPSLQLAYEHGLINVSAEAHGCNGAK-GT 253
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKL-------------S 109
SLD ++ ++ ++++ID + + + D K S
Sbjct: 254 YRYHGAWGSLDQILVSKNLRSWMIDCRINDARFLLEEDTKYGGVKPRRNYNGMRFNNGFS 313
Query: 110 THCPLTIEYD 119
H PL +
Sbjct: 314 DHLPLVLRLQ 323
>gi|147775294|emb|CAN61586.1| hypothetical protein VITISV_042821 [Vitis vinifera]
Length = 1302
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 17/106 (16%)
Query: 20 GIPFVIAGDFNRKINSIGDTD---------DFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
P+ + GDFN ++ F Q +D LL QE + RN
Sbjct: 419 EDPWCLGGDFNVILSQRERNRQGRLTGAMRIFAQTVDELELLDLPMQE-GAFTWSGGRNN 477
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S FL+ + + + + S H P+ +
Sbjct: 478 QS------WARLDRFLVTQQWLEMFSGIA-QCRLQRPTSDHFPILL 516
>gi|87118245|ref|ZP_01074144.1| hypothetical protein MED121_14499 [Marinomonas sp. MED121]
gi|86165879|gb|EAQ67145.1| hypothetical protein MED121_14499 [Marinomonas sp. MED121]
Length = 349
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 37/124 (29%), Gaps = 5/124 (4%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEK 59
+Q L + + + +I GDFN K + W+ + Q+
Sbjct: 227 RKQFLQLADFINS-YSSNATVIIGGDFNNKWSDYPHAVEQQAVWEMFLATTGMRLACQDF 285
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + ++ + ++ ++LS H P+ ++
Sbjct: 286 IEGTD-DSIANCAASSSESTDQVAYVNRASAPYQLVLEEYGELDNFTELSDHEPIRAKFS 344
Query: 120 FEKG 123
+ K
Sbjct: 345 WSKS 348
>gi|293571332|ref|ZP_06682364.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium E980]
gi|291608597|gb|EFF37887.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium E980]
Length = 274
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 2/98 (2%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P + GDFN D + P Q+K++ + KR +
Sbjct: 179 PLYLLGDFN-NPAEGSGYDLVAKSQLPIRDAYPIAQKKQAEATIEKRIDGWENNK-EGLR 236
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + SY + +S H + + +
Sbjct: 237 IDYIYVPQDCFVTSYQRIFDGENGPIVSDHYGVAVTLE 274
>gi|291515610|emb|CBK64820.1| Metal-dependent hydrolase [Alistipes shahii WAL 8301]
Length = 380
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 19/96 (19%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN S + + F + + + ++L
Sbjct: 301 IVCGDFNDTPMS-YVYRTMARGLRDA-----FRECGSGYSHTFRGFYNTLR--------I 346
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++++ F +SY+ +D S H P+ +
Sbjct: 347 DYVLSGGFEPLSYEVLPVDY-----SDHHPVVVRLR 377
>gi|227891490|ref|ZP_04009295.1| exodeoxyribonuclease III [Lactobacillus salivarius ATCC 11741]
gi|227866637|gb|EEJ74058.1| exodeoxyribonuclease III [Lactobacillus salivarius ATCC 11741]
Length = 275
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 37/141 (26%), Gaps = 25/141 (17%)
Query: 2 LSQQGE---WLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQK----------- 45
L + E W +K+AD + P + +GDFN I
Sbjct: 136 LRRLAERQVWDEKYADYLVSLDQNKPLLSSGDFNVAHKEIDLAHPGNNHHSAGFTDEERA 195
Query: 46 -------MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ + + + + +L N +
Sbjct: 196 GFTNLLNKGFTDTFRYVHGDVKDVYSWWAQRSRTSKINNSGWRIDYWLASNRIADKIVRS 255
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
LD+ + H P+ +E +
Sbjct: 256 EMLDSGERR--DHTPIVLEIN 274
>gi|163734662|ref|ZP_02142101.1| hypothetical protein RLO149_14583 [Roseobacter litoralis Och 149]
gi|161392155|gb|EDQ16485.1| hypothetical protein RLO149_14583 [Roseobacter litoralis Och 149]
Length = 227
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 25/121 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + L++ + P ++AGDFN + +++D
Sbjct: 130 RKQVDVLRQVLQGQT---HPVILAGDFN---------EWNLKRLDFGSDAQIVSPGLSFH 177
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
F++ +VS T + S H P+ I DF K
Sbjct: 178 ------------AARPRAALDLFVLGPGLRVVSSHVHK-STLAVRASDHLPIVITVDFTK 224
Query: 123 G 123
Sbjct: 225 A 225
>gi|326804146|ref|YP_004321964.1| exodeoxyribonuclease III [Aerococcus urinae ACS-120-V-Col10a]
gi|326650889|gb|AEA01072.1| exodeoxyribonuclease III [Aerococcus urinae ACS-120-V-Col10a]
Length = 281
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 27/142 (19%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
L + E W +K+A ++ P + GDFN I
Sbjct: 136 LKRLAERQVWDEKYAQYLSQLDQEKPLIATGDFNVAHKEIDLAHPENNHKSAGFTDEERS 195
Query: 42 FWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ K+ G F +R K+S FL+ + +
Sbjct: 196 GFTKLLDQGFTDTFRHIHGDVEGVYSWWAQRVKTSKIN-NSGWRIDYFLVSDRIANAVEK 254
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
+D+ + H P+ +E
Sbjct: 255 SEMIDSGTRQ--DHTPIYLEIS 274
>gi|300215075|gb|ADJ79491.1| Exodeoxyribonuclease III [Lactobacillus salivarius CECT 5713]
Length = 275
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 37/141 (26%), Gaps = 25/141 (17%)
Query: 2 LSQQGE---WLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQK----------- 45
L + E W +K+AD + P + +GDFN I
Sbjct: 136 LRRLAERQVWDEKYADYLVSLDQNKPLLSSGDFNVAHKEIDLAHPGNNHHSAGFTDEERA 195
Query: 46 -------MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ + + + + +L N +
Sbjct: 196 GFTNLLNKGFTDTFRYVHGDVKDVYSWWAQRSRTSKINNSGWRIDYWLASNRIADKIVRS 255
Query: 99 SDLDTRRSKLSTHCPLTIEYD 119
LD+ + H P+ +E +
Sbjct: 256 EMLDSGERR--DHTPIVLEIN 274
>gi|227550110|ref|ZP_03980159.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium TX1330]
gi|227180754|gb|EEI61726.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium TX1330]
Length = 293
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 2/98 (2%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P + GDFN D + P Q+K++ + KR +
Sbjct: 198 PLYLLGDFN-NPAEGSGYDLVAKSQLPIRDAYPIAQKKQAEATIEKRIDGWENNK-EGLR 255
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + SY + +S H + + +
Sbjct: 256 IDYIYVPQDCFVTSYQRIFDGENGPIVSDHYGVAVTLE 293
>gi|225077368|ref|ZP_03720567.1| hypothetical protein NEIFLAOT_02428 [Neisseria flavescens
NRL30031/H210]
gi|224951296|gb|EEG32505.1| hypothetical protein NEIFLAOT_02428 [Neisseria flavescens
NRL30031/H210]
Length = 261
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 14/114 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + + + I+ P +IAGDFN W++ L +
Sbjct: 147 KQYRAISDYVGRYIRPESPLIIAGDFND-----------WRQKSARELGRALDLNEVFVD 195
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
N KR K+ + + + + + ++ + + LS H PL++
Sbjct: 196 NTGKRPKTF--PSRLPILSLDRIYTRNLDVIDSEIHNSK-DWQHLSDHLPLSVT 246
>gi|147842050|emb|CAN75859.1| hypothetical protein VITISV_014707 [Vitis vinifera]
Length = 1407
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 28/107 (26%), Gaps = 17/107 (15%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD---------FWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
P+ + GDFN + F Q +D GL+ Q
Sbjct: 534 EEPWCVGGDFNVIRSQNERNRQGRISAAMRKFAQVIDELGLIDLPLQGG------DYTWS 587
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ R ++ + S S H P+ +E
Sbjct: 588 GGPNNRYWARLDRFLVTSCWIDQFSSVI--QKRLSRPASDHFPVVLE 632
>gi|119114058|ref|XP_319013.3| AGAP009893-PA [Anopheles gambiae str. PEST]
gi|116118234|gb|EAA14395.3| AGAP009893-PA [Anopheles gambiae str. PEST]
Length = 413
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 42/151 (27%), Gaps = 29/151 (19%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSI---------------GDTDDFWQK 45
+ ++QG+ L + D + P ++ GDFN + +D ++
Sbjct: 249 LRNEQGKDLLYFIDG-VAENRPVILCGDFNAEPIEPIYSTVLNYKPLGLASAYSDLLAEE 307
Query: 46 MDPDGLLIRFPQ-------EKESTCNVIKRNKSS----LDYFVIDRDNKNFLIDNSF-SI 93
+ + R + +DY +D F S
Sbjct: 308 SQDENNQNALNTVAEQSAAYEPPYTTWKIREEGEVCHTIDYVFYSKDKLTVKNCLMFPSG 367
Query: 94 VSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ + S H L + + + +
Sbjct: 368 EEIGVDRTPSFQ-YPSDHFSLVCDIELKPAS 397
>gi|302556768|ref|ZP_07309110.1| secreted protein [Streptomyces griseoflavus Tu4000]
gi|302474386|gb|EFL37479.1| secreted protein [Streptomyces griseoflavus Tu4000]
Length = 295
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 12/111 (10%), Positives = 26/111 (23%), Gaps = 22/111 (19%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+ + P V+ GDFN + + W ++
Sbjct: 200 QVADMLEVLATDRGPKVLVGDFNAEATAPEL-SPLWGRLRDAAPAA-------------- 244
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + D T ++ S H P+ +
Sbjct: 245 --GPTYPAAEPVKRIDLITVSPGI-----GVRDARTVATEASDHRPVVADL 288
>gi|77556102|gb|ABA98898.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1188
Score = 39.0 bits (89), Expect = 0.19, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 4/105 (3%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE----STCNVIKRNKS 71
+ + +P+++ GDFN + + Q + V +
Sbjct: 9 RQFSNLPWLVLGDFNEALWQFEHFSVRQRNETQMQSFRDVLQTCDLHALGFSGVPYTYDN 68
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ R + + ++ + + + S S HCP+++
Sbjct: 69 RREGRNNIRVRLDRALADNDWREMFGNARVSHLTSTRSDHCPISV 113
>gi|332322187|emb|CCA66198.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1381
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 18/108 (16%)
Query: 18 KTGIPFVIAGDFNRKINSIG--------DTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ +P +IAGDFN ++S + ++ + LI + +
Sbjct: 131 NSNLPCLIAGDFNEVLSSKDRGSHQIDESSSLKFRNFINNLRLIEVSPVEGWYTWFRGNS 190
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+S LD ++ + + SI++ S HCPL ++
Sbjct: 191 RSKLDRVLVQAEWIEKFPALAVSILNRSI----------SDHCPLLLQ 228
>gi|320158919|ref|YP_004191297.1| putative phospholipase C [Vibrio vulnificus MO6-24/O]
gi|319934231|gb|ADV89094.1| putative phospholipase C [Vibrio vulnificus MO6-24/O]
Length = 442
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 11/127 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I V +GDFN GD + E
Sbjct: 314 QRQFKQMRALAQSLKIPANETVVYSGDFNVNKRKFPGDYQQMIANLSAIEPHYSGYTEST 373
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD---------TRRSKLSTH 111
+ L ++ N +++ + + +D + LS H
Sbjct: 374 FDPRINNFAGEPLSGGENVEYLDYVMVSNEYAVKGDNNNRVDIPRSTAESLWKHYNLSDH 433
Query: 112 CPLTIEY 118
P++
Sbjct: 434 FPVSTVL 440
>gi|307325474|ref|ZP_07604676.1| Endonuclease/exonuclease/phosphatase [Streptomyces violaceusniger
Tu 4113]
gi|306888943|gb|EFN19927.1| Endonuclease/exonuclease/phosphatase [Streptomyces violaceusniger
Tu 4113]
Length = 286
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 24/119 (20%), Gaps = 19/119 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + + V+ GD N + D + +
Sbjct: 181 ERQAARIVELLG---SSPEHTVLVGDLNATPETPEIG--ILTGALDDVWPRAGSGDGFTY 235
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
D L ++ D S H P+ +
Sbjct: 236 -----------DALDPHARIDFHLASRDLGPLTAQVVTADPE---ASDHLPVVSDLRMP 280
>gi|260910504|ref|ZP_05917172.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260635346|gb|EEX53368.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 298
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 5/102 (4%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+P AGD N + + F ++ +S +V + N++ +
Sbjct: 202 ATLPVFFAGDLNDSPSWNPEKSAFPIINKAFDVIT-----PQSGTSVDQPNETIDHVLID 256
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + T +S H P+ ++ F
Sbjct: 257 KAHKGAVKVVQTAVVKQLEINGKVTETQTISDHFPVFVDVRF 298
>gi|2462635|emb|CAA04665.1| deoxyribonuclease I [Oreochromis mossambicus]
Length = 284
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 2/98 (2%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
V+ GDFN + + + ++ D + + V + V
Sbjct: 188 IVLLGDFNAGCSYVSGSAWQQIRIFTDKTFHWLITD-AADTTVSQTVCPYDRIVVTTDMM 246
Query: 83 KNFLIDNSFSIVSYDQSDLDTR-RSKLSTHCPLTIEYD 119
+ + +++ +L +S H P+ ++
Sbjct: 247 RGVVQNSAKVYNYMTDLNLKQDLALAVSDHFPVEVKLS 284
>gi|196233332|ref|ZP_03132177.1| exodeoxyribonuclease III Xth [Chthoniobacter flavus Ellin428]
gi|196222637|gb|EDY17162.1| exodeoxyribonuclease III Xth [Chthoniobacter flavus Ellin428]
Length = 216
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 9/96 (9%), Positives = 21/96 (21%), Gaps = 21/96 (21%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD------------------FW 43
+Q +W + + +K++ P + GD N I +
Sbjct: 121 RQ-QWDRDFLAYLKKLELKKPVIWCGDLNVAHTEIDLARPKDNVKNHGFTPEERAGFDAF 179
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
F + + +
Sbjct: 180 VGAGFVDAFREFEKAGGHYTWWSQMGTARARNIGWR 215
>gi|150396093|ref|YP_001326560.1| endonuclease/exonuclease/phosphatase [Sinorhizobium medicae WSM419]
gi|150027608|gb|ABR59725.1| Endonuclease/exonuclease/phosphatase [Sinorhizobium medicae WSM419]
Length = 287
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 29/121 (23%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q E L K G P ++ GD N + F M
Sbjct: 166 ARQAEMLLK--ASADGAGRPTLLIGDLNEWRMGKRSSLSFLSPMFDPSHAAVASFPS--- 220
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
L + + S + D R S H P+ D +
Sbjct: 221 -------------RFPLLPLDRVLGNPHHLVTSVEVHDSPLARV-ASDHLPVKASIDLKA 266
Query: 123 G 123
Sbjct: 267 A 267
>gi|227538655|ref|ZP_03968704.1| endonuclease/exonuclease/phosphatase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241574|gb|EEI91589.1| endonuclease/exonuclease/phosphatase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 258
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 22/114 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q +++ + T V+ GD N + S L F + +
Sbjct: 164 QAKFI---VNHFQDTKHLVVLVGDLNAQPQSEPIK----------ILGDFFKRSEVPNGF 210
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ +R+ +++ S + Q+ S S H P+ E
Sbjct: 211 T-------IPEVNPNREIDFIMVNKSKNPK--FQNHTVIEESYASDHRPVYAEL 255
>gi|189463613|ref|ZP_03012398.1| hypothetical protein BACCOP_04337 [Bacteroides coprocola DSM 17136]
gi|189429716|gb|EDU98700.1| hypothetical protein BACCOP_04337 [Bacteroides coprocola DSM 17136]
Length = 342
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 35/143 (24%), Gaps = 27/143 (18%)
Query: 6 GEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKM----DPDGLLIRFPQEK 59
L+ AD KI+ +I GDFN S L +
Sbjct: 196 ARVLRHAADSVMKIRQTPYLIIIGDFNDYPESRSVCRTLGAGKPEKDIDSYRLYNLMNGR 255
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD--------TRRSKL--- 108
+ + LD +++ N + + K
Sbjct: 256 QGGTYRYRGEWGILDQLILNGTFLNHTGNLTTEFNRARILTFPFLLEEDENYGGDKPFRT 315
Query: 109 ----------STHCPLTIEYDFE 121
S H P+ ++ D +
Sbjct: 316 YNGMKYHGGYSDHLPVCVDIDIK 338
>gi|157125734|ref|XP_001660755.1| neutral Sphingomyelinase, putative [Aedes aegypti]
gi|108882608|gb|EAT46833.1| neutral Sphingomyelinase, putative [Aedes aegypti]
Length = 420
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 12/131 (9%), Positives = 27/131 (20%), Gaps = 11/131 (8%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-FWQKMDPDGL------LIRFPQ 57
Q ++ + + ++AGD N + + K+
Sbjct: 151 QAYDTAQFIESTRGNAVMQILAGDLNTEPGDLAYRVLQTNAKLIDTADKKLYAAGHLGTN 210
Query: 58 EKESTCNVIK----RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
E + I + + S H
Sbjct: 211 EIGRNSYTDPETGKKYPQGKRIDYIMYRIGEHFEGRLLEHRLPLPDRIPGKDISYSDHEA 270
Query: 114 LTIEYDFEKGN 124
+ + +K N
Sbjct: 271 VYAKIILKKTN 281
>gi|317502601|ref|ZP_07960722.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
salivae DSM 15606]
gi|315666282|gb|EFV05828.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
salivae DSM 15606]
Length = 315
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 31/131 (23%), Gaps = 17/131 (12%)
Query: 6 GEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ L + D + VIAGDFN + +
Sbjct: 186 AKRLVEAVDSVRNHSNNAKIVIAGDFNDYQKDVSIQYVMHHDFLDISASAVGNHGAK-GT 244
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY-DQSDLDTRRSKL-------------S 109
+ SLD+ F + + D + S
Sbjct: 245 YKYRGEWGSLDHIFCSDPLIPFFQRCYVADFPFLLTEDEIYGGVQPLRNFHGARYQNGFS 304
Query: 110 THCPLTIEYDF 120
H PL ++F
Sbjct: 305 DHLPLVSLFNF 315
>gi|315497896|ref|YP_004086700.1| endonuclease/exonuclease/phosphatase [Asticcacaulis excentricus CB
48]
gi|315415908|gb|ADU12549.1| Endonuclease/exonuclease/phosphatase [Asticcacaulis excentricus CB
48]
Length = 315
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 12/116 (10%), Positives = 27/116 (23%), Gaps = 19/116 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+++ A + P ++ GD N + + +
Sbjct: 219 QYIAHLARRVAAETKPVIVTGDLNAT-----LWSGSMEPLMRARM--------------S 259
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
S L + + + L R S H P+ + +
Sbjct: 260 WPAGSGLRHTWPTGRALLGIQIDHVLTKGLPAGRLTVLRHVGSDHLPVRADLVLPE 315
>gi|198282936|ref|YP_002219257.1| Endonuclease/exonuclease/phosphatase [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|198247457|gb|ACH83050.1| Endonuclease/exonuclease/phosphatase [Acidithiobacillus
ferrooxidans ATCC 53993]
Length = 258
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 39/124 (31%), Gaps = 24/124 (19%)
Query: 2 LSQQGE--WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
LS+ ++ Q+++ ++ GD N S + + + L P
Sbjct: 149 LSRHARLSQIRD-LAQRLRGRPNLILMGDLNCTARSPE-----MRLLLNESGLQAPPWSP 202
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + R D+ + D + +I +T LS H L +
Sbjct: 203 PTFPSWSPRFS--FDHILCSPDLEFTMI--------------ETVTEPLSDHLALKAKLR 246
Query: 120 FEKG 123
++
Sbjct: 247 WDSA 250
>gi|12323542|gb|AAG51754.1|AC068667_33 reverse transcriptase, putative; 100033-105622 [Arabidopsis
thaliana]
Length = 1557
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 20/104 (19%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
++ P+ + GDFN + + G D
Sbjct: 580 RLNRKDPWCMLGDFNAI-----LHNGEKKGGPRRGDSAFL---------------PFKDM 619
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N ++ S+ + + S H P+ + D
Sbjct: 620 LESCDIRLDRRFGNKNWFKAFPVSNQEFLDKRGSDHRPVLVRLD 663
>gi|117919422|ref|YP_868614.1| endonuclease/exonuclease/phosphatase [Shewanella sp. ANA-3]
gi|117611754|gb|ABK47208.1| Endonuclease/exonuclease/phosphatase [Shewanella sp. ANA-3]
Length = 377
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 20/164 (12%), Positives = 42/164 (25%), Gaps = 44/164 (26%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNR---------------KINSIGDTDDFWQKMD 47
++ ++ P ++ GDFN ++S +
Sbjct: 214 AEAALLFHAILARRQSAKYPVILMGDFNDSLSLGALDALTLQGEALHSNDIKAAGLGHLS 273
Query: 48 PDGLLIRF-----------------------PQEKESTCNVIKRNKSSLDYFVIDRDNKN 84
L F +E + + S LDY ++ +
Sbjct: 274 DAALAQVFGHYRLQDAYELFIEANVVDNAVHYREHRAPTHYYGPKGSVLDYVLLSNEFDA 333
Query: 85 FLIDNSFSIVSYDQSD------LDTRRSKLSTHCPLTIEYDFEK 122
+ +V Y D R + + H P+ +E +
Sbjct: 334 SDSRSLAQVVDYQTCDRHLVRPEYERDAYSTDHAPVMVELALRR 377
>gi|332367379|gb|EGJ45112.1| RgfB protein [Streptococcus sanguinis SK1059]
Length = 271
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K + +K P V+ GDFN + G + +
Sbjct: 159 QGEW-AKLEAELLKVKTPLVLMGDFNNPVGQQGYQTILASPLKLQDSHTVAKEASGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + +S H L ++
Sbjct: 218 --EGTIAGWDDNKHALKIDYVFTSQGMDVERSAVVFDGKETPVVSDHFGLEVQVTL 271
>gi|239611755|gb|EEQ88742.1| endonuclease/Exonuclease/phosphatase [Ajellomyces dermatitidis
ER-3]
gi|327348230|gb|EGE77087.1| endonuclease/Exonuclease/phosphatase [Ajellomyces dermatitidis ATCC
18188]
Length = 1194
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 17/125 (13%)
Query: 14 DQKIKTGIPFVIAGDFNR----------------KINSIGDTDDFWQKMDPDGLLIRFPQ 57
++ I+ + GDFN + S+ + D +M + +
Sbjct: 786 NRSIEDHDIIIWLGDFNYRIGLPGDTVRGLIKAGDLESLYEHDQLNLQMVAGLTFPFYSE 845
Query: 58 EKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + N + + + + + D K S H P+
Sbjct: 846 ARITFPPTYKYDNGTDRYDTSEKARTPAWCDRILWKGKNIRPLEYDAAPLKFSDHRPVYA 905
Query: 117 EYDFE 121
+D E
Sbjct: 906 TFDCE 910
>gi|218202326|gb|EEC84753.1| hypothetical protein OsI_31756 [Oryza sativa Indica Group]
Length = 1350
Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 6/109 (5%)
Query: 16 KIKTGIPFVIAGDFNRK-----INSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + +P+++ GDFN S ++ + D L + +
Sbjct: 366 RQSSNLPWLVMGDFNEVLWQYEHFSKRPRNESQMRAFRDALHSCELHDLGFRGLPHTYDN 425
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + D ++ V + + L S S HCP+ ++
Sbjct: 426 KREGWNNVKVRLDRAVADGNWRDV-FSNAQLSHLVSPCSDHCPIVLQLS 473
>gi|289805075|ref|ZP_06535704.1| hypothetical protein Salmonellaentericaenterica_11707 [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 131
Score = 39.0 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 18/119 (15%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L W + + P ++AGDFN ++ GL +E
Sbjct: 29 RQAQLTMLAGWVNA-LPESEPVLVAGDFNDW------RQKAGPPLNAAGL-------EEI 74
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + + N+ S + LS H PL+ E
Sbjct: 75 FTRAHGRPARTFPVSMPLLRLDRIYVKNA--NASSPGALPLRNWRHLSDHAPLSAEIHL 131
>gi|193212906|ref|YP_001998859.1| endonuclease/exonuclease/phosphatase [Chlorobaculum parvum NCIB
8327]
gi|193086383|gb|ACF11659.1| Endonuclease/exonuclease/phosphatase [Chlorobaculum parvum NCIB
8327]
Length = 341
Score = 39.0 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 33/141 (23%), Gaps = 28/141 (19%)
Query: 6 GEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + D ++ GDFN N D + + C
Sbjct: 199 AKVARHIVDSLTTRNPMAEIIVMGDFNDHPNDRSIRTVLGSSFDRKEVTSSANR-LLYNC 257
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDN--------SFSIVSYDQ---------------SD 100
++ + Y L+ S S+ S
Sbjct: 258 WNDTKSPGTYYYRKQWERIDQILVSPALLDNSKLSIDTKSFRVFSIPEMFSHPGKTLYST 317
Query: 101 LDTRRSKL--STHCPLTIEYD 119
+ K S H PL ++ D
Sbjct: 318 YQRGKFKGGYSDHLPLLLKID 338
>gi|115379792|ref|ZP_01466863.1| endonuclease/exonuclease/phosphatase [Stigmatella aurantiaca
DW4/3-1]
gi|310820726|ref|YP_003953084.1| endonuclease/exonuclease/phosphatase domain-containing protein
[Stigmatella aurantiaca DW4/3-1]
gi|115363210|gb|EAU62374.1| endonuclease/exonuclease/phosphatase [Stigmatella aurantiaca
DW4/3-1]
gi|309393798|gb|ADO71257.1| Endonuclease/exonuclease/phosphatase domain protein [Stigmatella
aurantiaca DW4/3-1]
Length = 254
Score = 39.0 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 31/117 (26%), Gaps = 15/117 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q+ L Q P V+ GDFN + Q + L + +
Sbjct: 136 RQERLLLSADILQDAARKDPVVVCGDFN-YWGNKPVPALVRQAIHDVALELDA----PAR 190
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + +D +S S S H PL + ++
Sbjct: 191 TYPSR---------LPMLRLDRIFVDTGVRPISIHPHR-SELASVASDHLPLVMRFE 237
>gi|29348219|ref|NP_811722.1| hypothetical protein BT_2810 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29340122|gb|AAO77916.1| Metallophosphoesterase [Bacteroides thetaiotaomicron VPI-5482]
Length = 611
Score = 39.0 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 35/116 (30%), Gaps = 20/116 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ E LK +A K P +AGD N + S + ++
Sbjct: 153 KSLEILKTFAASYKK---PLFLAGDMNAEPESDFIKEL-------QKEFRILSNPRQ--- 199
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ID D F++VS + + S H P+ +E
Sbjct: 200 ---HTFPAPAPKETIDYVAAFKQNDKGFAVVSSEVVNEPV----ASDHRPIVVELR 248
>gi|130500075|ref|NP_001076209.1| deoxyribonuclease-1 precursor [Oryctolagus cuniculus]
gi|6015030|sp|O18998|DNAS1_RABIT RecName: Full=Deoxyribonuclease-1; AltName: Full=Deoxyribonuclease
I; Short=DNase I; Flags: Precursor
gi|2315143|dbj|BAA21724.1| deoxyribonuclease I [Oryctolagus cuniculus]
Length = 281
Score = 39.0 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 42/118 (35%), Gaps = 5/118 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D + K G ++ GDFN + + + ++ + + T
Sbjct: 164 EIDALYDVYLDVQKKWGLQDVMLMGDFNADYSYVTSSQWSSIRLRTNPAFKWLIPDTADT 223
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTIEY 118
N + V ++ ++ NS + ++ + + +S H P+ +
Sbjct: 224 TA-TSTNCAYDRIVVAGPLLQDAVVPNSAAPFNFQAAYGLSNQLAQAISDHYPVEVTL 280
>gi|322386957|ref|ZP_08060581.1| RgfB protein [Streptococcus cristatus ATCC 51100]
gi|321269239|gb|EFX52175.1| RgfB protein [Streptococcus cristatus ATCC 51100]
Length = 271
Score = 39.0 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K+ + ++ P V+ GDFN ++ G + Q +
Sbjct: 159 QGEW-AKFESELLQVETPLVLMGDFNNPVDYEGYQHILQSPLALQDSHKVAVQTIGAAT- 216
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V F++ R +S H L + F
Sbjct: 217 VEGDIAGWAGNKD-ALKIDYIFTSKDFNVERSAVVFDGQRGPVVSDHFGLEAQVHF 271
>gi|295428588|ref|ZP_06821215.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|295127570|gb|EFG57209.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus EMRSA16]
Length = 231
Score = 39.0 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 100 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTEEFKDMLKNLNVNDVLYAGHNSTW 159
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 160 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 219
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 220 FSDHYPIKA 228
>gi|253734882|ref|ZP_04869047.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus TCH130]
gi|253727064|gb|EES95793.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus TCH130]
Length = 275
Score = 39.0 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 144 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 203
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 204 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 263
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 264 FSDHYPIKA 272
>gi|329893672|ref|ZP_08269806.1| hypothetical protein IMCC3088_1571 [gamma proteobacterium IMCC3088]
gi|328923599|gb|EGG30911.1| hypothetical protein IMCC3088_1571 [gamma proteobacterium IMCC3088]
Length = 288
Score = 39.0 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 24/118 (20%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L +Q + + DQ P V+AGDFN W K + L + +
Sbjct: 171 LQEQLDAISDVIDQYTG---PIVVAGDFN-----------TWSKARTEILQRFIQRHELI 216
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N + + + + S+ S H PL +
Sbjct: 217 ATNFDPDY----RVRPFSYPLDH------ILTKNLEVLAAQSEHSEHSDHTPLMMTIR 264
>gi|307705238|ref|ZP_07642105.1| endonuclease/Exonuclease/phosphatase family protein [Streptococcus
mitis SK597]
gi|307621187|gb|EFO00257.1| endonuclease/Exonuclease/phosphatase family protein [Streptococcus
mitis SK597]
Length = 271
Score = 39.0 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 11/106 (10%), Positives = 27/106 (25%), Gaps = 2/106 (1%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ P ++AGDFN G + ++S +
Sbjct: 168 LKELNKPLLLAGDFNNPAGQEGYQAILASPLGLQDAFEVAQ--EKSGSYTVPPEIDGWKG 225
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ + + ++S H L +++
Sbjct: 226 NTEPLRIDYVFTTKELAVENLHVVFDGNKSPQVSDHYGLNAILNWK 271
>gi|257458794|ref|ZP_05623917.1| putative endonuclease/exonuclease/phosphatase [Campylobacter
gracilis RM3268]
gi|257443782|gb|EEV18902.1| putative endonuclease/exonuclease/phosphatase [Campylobacter
gracilis RM3268]
Length = 453
Score = 39.0 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 15/107 (14%), Positives = 37/107 (34%), Gaps = 8/107 (7%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK--ESTCNVIKR 68
+ + ++ ++AGDFN ++ ++ L P +
Sbjct: 167 AFLREVLQGHQRAIVAGDFNTNFGRNSLLNELIERDGFSDLWALHPCSQLKHFGSCESHE 226
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + LD+ ++ F + + S+ + S S H P++
Sbjct: 227 SGAVLDHILLSD--DFFSNEPGYKKDSFVV----AKSSTASDHFPIS 267
>gi|270007917|gb|EFA04365.1| hypothetical protein TcasGA2_TC014661 [Tribolium castaneum]
Length = 136
Score = 39.0 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 31/114 (27%), Gaps = 16/114 (14%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPD---------------GLLIRFPQEKESTCNVI 66
++ GDFN S + D ++ + N
Sbjct: 21 RVILCGDFNSVPTSTVYEFLTKGNLSRDNKVFEKTVNNVNLRHDFQLQSACGSPTYTNYT 80
Query: 67 KRNKSSLDYFVIDRD-NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ LDY I++D + + + + S H L ++ +
Sbjct: 81 DDFRGCLDYIFIEKDKMRVCNVVPFPKNEDLEAFEGLPNEVYPSDHLALVVDLE 134
>gi|261201242|ref|XP_002627021.1| endonuclease/Exonuclease/phosphatase [Ajellomyces dermatitidis
SLH14081]
gi|239592080|gb|EEQ74661.1| endonuclease/Exonuclease/phosphatase [Ajellomyces dermatitidis
SLH14081]
Length = 1194
Score = 39.0 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 17/125 (13%)
Query: 14 DQKIKTGIPFVIAGDFNR----------------KINSIGDTDDFWQKMDPDGLLIRFPQ 57
++ I+ + GDFN + S+ + D +M + +
Sbjct: 786 NRSIEDHDIIIWLGDFNYRIGLPGDTVRGLIKAGDLESLYEHDQLNLQMVAGLTFPFYSE 845
Query: 58 EKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + N + + + + + D K S H P+
Sbjct: 846 ARITFPPTYKYDNGTDRYDTSEKARTPAWCDRILWKGKNIRPLEYDAAPLKFSDHRPVYA 905
Query: 117 EYDFE 121
+D E
Sbjct: 906 TFDCE 910
>gi|154278848|ref|XP_001540237.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412180|gb|EDN07567.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 1241
Score = 39.0 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 19/126 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQ 57
++ I+ + GDFN +I D D +M + +
Sbjct: 787 NRSIEDHDTIIWLGDFNYRIGLPDDTVRGLIKAGDFESLYSHDQLNLQMVAGLTFPFYSE 846
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLT 115
+ + + + D + + + + L+ + L S H P+
Sbjct: 847 ARITFP-PTYKYDNGTDQYDTSEKARTPAWCDRILWKGANIRLLEYNAAPLKFSDHRPVY 905
Query: 116 IEYDFE 121
+D E
Sbjct: 906 ATFDCE 911
>gi|239983100|ref|ZP_04705624.1| hypothetical protein SalbJ_26953 [Streptomyces albus J1074]
gi|291454932|ref|ZP_06594322.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291357881|gb|EFE84783.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 299
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 34/118 (28%), Gaps = 25/118 (21%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L +++ ++ GD N ++ + + P + PQ +
Sbjct: 204 DESARLLGARLERERAG--RVLVVGDLNGTLDD--------RGLAPVTGRMGTPQGGFAF 253
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + +D+ + S + T + S H P+ D
Sbjct: 254 SWPERFPLARIDHVLGR---------------SVSVVGVHTLPATGSDHLPVLARVDL 296
>gi|157115453|ref|XP_001658213.1| nocturnin [Aedes aegypti]
gi|108876911|gb|EAT41136.1| nocturnin [Aedes aegypti]
Length = 418
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 19/153 (12%), Positives = 43/153 (28%), Gaps = 31/153 (20%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSI---------------GDTDDFWQK 45
+ ++QG+ L + D + P ++ GDFN + +D Q+
Sbjct: 252 LRNEQGKDLLYFIDG-VAEKRPVILCGDFNAEPIEPVYSTVLNYKPLGLGSAYSDLLAQE 310
Query: 46 M---------DPDGLLIRFPQEKESTCNVIKRNKSS----LDYFVIDRDNKNFLIDNSF- 91
+ + + R + +DY +D F
Sbjct: 311 FPQLAQENDQNVVNMAELSAAYEPPYTTWKIREEGEVCHTIDYVFYSKDQITVKNCLMFP 370
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ + S H L +++ + +
Sbjct: 371 AGEEISPDRTPCYQ-YPSDHFSLVCDFELQSTS 402
>gi|21357231|ref|NP_647790.1| CG12034 [Drosophila melanogaster]
gi|32172461|sp|Q9VZS6|NSMA_DROME RecName: Full=Putative neutral sphingomyelinase
gi|15291739|gb|AAK93138.1| LD24865p [Drosophila melanogaster]
gi|23092890|gb|AAF47741.2| CG12034 [Drosophila melanogaster]
gi|220944946|gb|ACL85016.1| CG12034-PA [synthetic construct]
gi|220954776|gb|ACL89931.1| CG12034-PA [synthetic construct]
Length = 442
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 31/122 (25%), Gaps = 6/122 (4%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--QKMDPDGLLIRFPQEKEST 62
Q ++ + ++AGD N + I + + +D E E
Sbjct: 152 QAFDTAQFIEATRGNSALQILAGDLNAQPQDISYKVLLYTSKMLDSCDSDSFRTNECEHN 211
Query: 63 CNVIK----RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K RN + I + + + + S H + +
Sbjct: 212 SYTSKQARERNPLGIRIDHIFVRGGDHVNAEIAEYKLPFPERVPGEKFSFSDHEAVMAKL 271
Query: 119 DF 120
Sbjct: 272 KL 273
>gi|6647483|sp|O42446|DNAS1_OREMO RecName: Full=Deoxyribonuclease-1; AltName: Full=Deoxyribonuclease
I; Short=DNase I; Flags: Precursor
Length = 284
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 12/98 (12%), Positives = 31/98 (31%), Gaps = 2/98 (2%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
V+ GDFN + + + ++ D + + V + V
Sbjct: 188 IVLLGDFNAGCSYVSGSAWQQIRIFTDKTFHWLITD-AADTTVSQTVCPYDRIVVTTDMM 246
Query: 83 KNFLIDNSFSIVSYDQSDLDTR-RSKLSTHCPLTIEYD 119
+ + +++ +L +S H P+ ++
Sbjct: 247 RGVVQNSAKVYNYMTDLNLKQDLALAVSDHFPVEVKLS 284
>gi|326335669|ref|ZP_08201855.1| endonuclease/exonuclease/phosphatase [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325692098|gb|EGD34051.1| endonuclease/exonuclease/phosphatase [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 253
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 20/130 (15%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNR------KINSIGDTDDFWQKMDPDGLLIRF 55
L QQ K+W + G+P +I GDFN+ + + L
Sbjct: 133 LHQQA---KEWGRILEQEGLPILIKGDFNQSRYNNQGYGTEKVRQILSDYLSQLDLTCIT 189
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQ---SDLDTRRSKLST 110
+ S ++ + + V + + I NS + Y +S
Sbjct: 190 ECDLSSFLHIDP-----IKHKV-RNNIDHICISNSLIRKVKGYQVGAWDHFSEEGKYMSD 243
Query: 111 HCPLTIEYDF 120
H + + ++
Sbjct: 244 HNGVFVSFEM 253
>gi|297827811|ref|XP_002881788.1| hypothetical protein ARALYDRAFT_483247 [Arabidopsis lyrata subsp.
lyrata]
gi|297327627|gb|EFH58047.1| hypothetical protein ARALYDRAFT_483247 [Arabidopsis lyrata subsp.
lyrata]
Length = 430
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 10/106 (9%), Positives = 22/106 (20%), Gaps = 25/106 (23%)
Query: 2 LSQQGEWLKKWAD------QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------ 49
L + +++W ++++ P V+ GD N I + K
Sbjct: 306 LKRLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDVFNPAGNKRSAGFTIEER 365
Query: 50 -------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
+ R+
Sbjct: 366 QSFGANFLAKGFVDTFRKQHLGVVGYTYWGYRHPWWPQNQQRFICL 411
>gi|289432089|ref|YP_003461962.1| endonuclease/exonuclease/phosphatase [Dehalococcoides sp. GT]
gi|288945809|gb|ADC73506.1| Endonuclease/exonuclease/phosphatase [Dehalococcoides sp. GT]
Length = 639
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 28/117 (23%), Gaps = 23/117 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + +I GDFN + +S + GL +
Sbjct: 546 QAGELADF----WDNAPATIILGDFNAEPDSEEIG-----LLRQAGLSDSLEGQTSVLTY 596
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+DY + + SY L S H + +
Sbjct: 597 HSADLYQRIDYIWASPEIEYI--------DSYTIVSL------ASDHLAIIADIRLS 639
>gi|295661161|ref|XP_002791136.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Paracoccidioides brasiliensis Pb01]
gi|226281063|gb|EEH36629.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Paracoccidioides brasiliensis Pb01]
Length = 769
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 27/125 (21%), Gaps = 25/125 (20%)
Query: 22 PFVIAGDFNRKINS---------------IGDTDDFWQKMDPDGLLIRFPQEKES----- 61
P +I GDFN S + + G+ F +
Sbjct: 620 PLIICGDFNSYPGSAVYELMNRGHLIEDHPDLEKRLYGNLSRLGMSYPFNLKSAYGAIGE 679
Query: 62 --TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCPLTIE 117
N +DY + Y S H + E
Sbjct: 680 LEFTNYTPDFADVIDYIWYTSNALQVTGLLGEVDKEYLQRVPGFPNY-HFPSDHLAIMAE 738
Query: 118 YDFEK 122
+ F+
Sbjct: 739 FSFKS 743
>gi|225427417|ref|XP_002264301.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 1549
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 6/109 (5%)
Query: 16 KIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN---K 70
+P+ + GDFN + + + V +
Sbjct: 485 HAAHSLPWCVIGDFNELMHQSEKCGNHPHPGSLIEAFRQVVTNCGLSDLGYVGYAYTWER 544
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ L+ + + + QS L S H P+ +E
Sbjct: 545 GRGTTRWVEERLDRALVSADWKHL-FHQSRLIHLFVSTSDHLPVLLELR 592
>gi|73748062|ref|YP_307301.1| endonuclease [Dehalococcoides sp. CBDB1]
gi|73659778|emb|CAI82385.1| probable endonuclease [Dehalococcoides sp. CBDB1]
Length = 639
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 28/117 (23%), Gaps = 23/117 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + +I GDFN + +S + GL +
Sbjct: 546 QAGELADF----WDNAPATIILGDFNAEPDSEEIG-----LLRQAGLSDSLEGQTSVLTY 596
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+DY + + SY L S H + +
Sbjct: 597 HSADLYQRIDYIWASPEIEYI--------DSYTIVSL------ASDHLAIIADIRLS 639
>gi|147668908|ref|YP_001213726.1| endonuclease/exonuclease/phosphatase [Dehalococcoides sp. BAV1]
gi|146269856|gb|ABQ16848.1| Endonuclease/exonuclease/phosphatase [Dehalococcoides sp. BAV1]
Length = 639
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 28/117 (23%), Gaps = 23/117 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + +I GDFN + +S + GL +
Sbjct: 546 QAGELADF----WDNAPATIILGDFNAEPDSEEIG-----LLRQAGLSDSLEGQTSVLTY 596
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+DY + + SY L S H + +
Sbjct: 597 HSADLYQRIDYIWASPEIEYI--------DSYTIVSL------ASDHLAIIADIRLS 639
>gi|291519280|emb|CBK74501.1| Endonuclease/Exonuclease/phosphatase family [Butyrivibrio
fibrisolvens 16/4]
Length = 361
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 15/129 (11%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFN-----------RKINSIGDTDDFWQKMDPDGLLI 53
Q L + + G + AGD N + D
Sbjct: 236 QVVMLNEDMRNEFAAGNYIIAAGDMNKDVLGDSTKYFNTSAQDQLWAKPFPVELLDDDFS 295
Query: 54 RFPQEKESTCNVIKRNKSSLDYFV-IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E+ RN + F++ ++ + + + K S H
Sbjct: 296 VVKPVDENDPVPSARNADTAYTKDSFVITIDGFIVSSNVEVTESNVVNT---GFKYSDHN 352
Query: 113 PLTIEYDFE 121
P+ +++ +
Sbjct: 353 PVFMDFILK 361
>gi|307728210|ref|YP_003905434.1| endonuclease/exonuclease/phosphatase [Burkholderia sp. CCGE1003]
gi|307582745|gb|ADN56143.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. CCGE1003]
Length = 265
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 18/116 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W ++ G P V+AGDFN N + + + + +
Sbjct: 166 RQMNWIAHWISKEAPDG-PLVLAGDFNDWRNDSV---PLFGEHGLHEVATLLGESGRTFP 221
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + LS H P
Sbjct: 222 AFSPALALDKMFVRGMKPIEWIQPTQE--------------TAWLSDHLPYMARLR 263
>gi|262170791|ref|ZP_06038469.1| hypothetical protein VII_001604 [Vibrio mimicus MB-451]
gi|261891867|gb|EEY37853.1| hypothetical protein VII_001604 [Vibrio mimicus MB-451]
Length = 281
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 31/119 (26%), Gaps = 23/119 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L D+ P ++AGDFN + + GL F + T
Sbjct: 185 QEQIAAL---LDELRSFAGPVIVAGDFNSWSEARM--ALLSAALTDIGLQAVFFESDNRT 239
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N LD+ S H PL + +
Sbjct: 240 TFI---NGLPLDHVFYRGLILKKAEAPQSD---------------ASDHNPLLVSFRLP 280
>gi|257889202|ref|ZP_05668855.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium
1,141,733]
gi|257825274|gb|EEV52188.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium
1,141,733]
Length = 274
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 2/98 (2%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P + GDFN D + P Q+K++ + KR +
Sbjct: 179 PLYLLGDFN-NPAEGSGYDLVAKSQLPIRDAYPIAQKKQAEATIEKRIDGWENNK-EGLR 236
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + SY + +S H + + +
Sbjct: 237 IDYIYVPQDCFVTSYQRIFDGENGPIVSDHYGVAVTLE 274
>gi|146420343|ref|XP_001486128.1| hypothetical protein PGUG_01799 [Meyerozyma guilliermondii ATCC
6260]
Length = 1022
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 30/129 (23%), Gaps = 28/129 (21%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLL----- 52
+++IK + GDFN +IN + D Q+M
Sbjct: 786 NRRIKDHDAVIWLGDFNYRINLPLEQVHALVEKKDFPRLFEYDQLNQQMASGESFPYFDE 845
Query: 53 ---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
P K + YD SD K S
Sbjct: 846 MELRFKPTYKFDNGTSTYDTSEKQRIPAWTDRILSLSRKKIIKQHLYDCSDEI----KFS 901
Query: 110 THCPLTIEY 118
H P+
Sbjct: 902 DHRPVYATL 910
>gi|322376933|ref|ZP_08051426.1| RgfB protein [Streptococcus sp. M334]
gi|321282740|gb|EFX59747.1| RgfB protein [Streptococcus sp. M334]
Length = 271
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 11/106 (10%), Positives = 26/106 (24%), Gaps = 2/106 (1%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ P ++AGDFN G + ++S +
Sbjct: 168 LKELNKPLLLAGDFNNPAGQEGYQAILASPLGLQDAFEVAQ--EKSGSYTVPPEIDGWKG 225
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ + ++S H L +++
Sbjct: 226 NTEPLRIDYIFTTKELAVEKLHVVFDGNKSPQVSDHYGLNAILNWK 271
>gi|294633236|ref|ZP_06711795.1| secreted protein [Streptomyces sp. e14]
gi|292831017|gb|EFF89367.1| secreted protein [Streptomyces sp. e14]
Length = 299
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 12/115 (10%), Positives = 26/115 (22%), Gaps = 22/115 (19%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+ + P V+ GDFN + ++ T W + +
Sbjct: 204 QVDDMLGVLAEDRGPKVLVGDFNAEPDAPELTR-LWGPLADA-------VPEAGDTYP-- 253
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + T + S H P+ + +
Sbjct: 254 -------ALDPVKRIDVIATSP-----DAVVTRARTVDTAASDHRPVVADLLLPR 296
>gi|262202978|ref|YP_003274186.1| endonuclease/exonuclease/phosphatase [Gordonia bronchialis DSM
43247]
gi|262086325|gb|ACY22293.1| Endonuclease/exonuclease/phosphatase [Gordonia bronchialis DSM
43247]
Length = 318
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 29/117 (24%), Gaps = 20/117 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST- 62
+ + L P ++AGDFN + + ++ + G Q
Sbjct: 214 RDMDILTAHLRSL--PAGPVIVAGDFNVTWD-----NARYRALLDLGFADAAEQAGAGFL 266
Query: 63 -CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + + + + + T S H + +
Sbjct: 267 PTYPTDRFGGQP-----------VVAIDHVITRGFVATSMRTAALPGSDHRAVVVTL 312
>gi|223043633|ref|ZP_03613677.1| sphingomyelin phosphodiesterase [Staphylococcus capitis SK14]
gi|222442911|gb|EEE49012.1| sphingomyelin phosphodiesterase [Staphylococcus capitis SK14]
Length = 329
Score = 39.0 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 32/130 (24%), Gaps = 14/130 (10%)
Query: 1 MLSQQGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDT---DDFWQKMDPDGLLIRFP 56
+ Q + +K++ D+ I P I GD N S D+ + +
Sbjct: 196 IRQSQMDEIKQFIKDKHIPKNEPIYIGGDLNVIKGSEEYQQMSDNLNVSLPTQFEGNAYS 255
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------- 108
+ +S + S + K
Sbjct: 256 WDTQSNDIAKYNYPKLEPQHLDYILLDRDHAQPSSWHNKVHKVKSPEWSVKSWGKTYKYN 315
Query: 109 --STHCPLTI 116
S H PL+
Sbjct: 316 DYSDHYPLSA 325
>gi|329961023|ref|ZP_08299302.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
fluxus YIT 12057]
gi|328532309|gb|EGF59113.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
fluxus YIT 12057]
Length = 348
Score = 39.0 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 20/149 (13%), Positives = 36/149 (24%), Gaps = 35/149 (23%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQK--------MDPDGLLIR- 54
+ LK D K +I GDFN + + ++P L
Sbjct: 197 AQRLKDAVDSLYKVRNRAQILIMGDFNDYPANKSVRQILKAEVPSSVSGSLNPHRLYHLL 256
Query: 55 ---FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--------SDLDT 103
K + LD+ ++ + S D D +
Sbjct: 257 AGKAAARKHFGSYKYQGEWGLLDHIIVSGNLLQAGSPLSADEKRADVFSLPFLLTEDPNY 316
Query: 104 RRSKL-------------STHCPLTIEYD 119
+ S H P+ ++
Sbjct: 317 GGKQPFRTYYGMKYQAGYSDHLPVWADFR 345
>gi|254477073|ref|ZP_05090459.1| endonuclease/exonuclease/phosphatase family protein [Ruegeria sp.
R11]
gi|214031316|gb|EEB72151.1| endonuclease/exonuclease/phosphatase family protein [Ruegeria sp.
R11]
Length = 242
Score = 39.0 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 30/120 (25%), Gaps = 22/120 (18%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + + +P V AGDFN + Q + +
Sbjct: 145 EQVHHLARHIAS--EPDLPTVCAGDFN---------EWSRQPVLDHIAPQLRFVPPK--- 190
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+S + +V S H P+ + + E G
Sbjct: 191 -------ASFPALRPIGALDRIAVSRGLRVVESGV-YRARPAHVASDHLPVWADLEAESG 242
>gi|66822403|ref|XP_644556.1| hypothetical protein DDB_G0273879 [Dictyostelium discoideum AX4]
gi|66822681|ref|XP_644695.1| hypothetical protein DDB_G0273327 [Dictyostelium discoideum AX4]
gi|60472679|gb|EAL70630.1| hypothetical protein DDB_G0273879 [Dictyostelium discoideum AX4]
gi|60472932|gb|EAL70881.1| hypothetical protein DDB_G0273327 [Dictyostelium discoideum AX4]
Length = 861
Score = 39.0 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN + +K+ + E R+ LD
Sbjct: 86 IIAGDFNNNHDCNSFFGTELRKIIDQDM--LLDTGIEENTPTFPRSMKRLDRIYCHPTLL 143
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N +++ S H P+TI
Sbjct: 144 NQNSKLVVHNTVFNK----------SDHFPITITIQ 169
>gi|315221911|ref|ZP_07863822.1| exodeoxyribonuclease III [Streptococcus anginosus F0211]
gi|315188877|gb|EFU22581.1| exodeoxyribonuclease III [Streptococcus anginosus F0211]
Length = 275
Score = 39.0 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 23/130 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GL 51
+ + P + GD+N N I + P
Sbjct: 150 ADYLTA-LDIEKPVLATGDYNVAHNEIDLAHPSSNRRSPGFTDEERSGFTNLLNRGFTDT 208
Query: 52 LIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ + +R+K+S +L N + +D+ +
Sbjct: 209 FRYIHGDIPNVYSWWAQRSKTSKIN-NSGWRIDYWLTSNRIADKVTKSEMIDSGTRQ--D 265
Query: 111 HCPLTIEYDF 120
H P+ +E +
Sbjct: 266 HTPIVLEIEL 275
>gi|302521053|ref|ZP_07273395.1| FG-GAP repeat-containing protein [Streptomyces sp. SPB78]
gi|302429948|gb|EFL01764.1| FG-GAP repeat-containing protein [Streptomyces sp. SPB78]
Length = 412
Score = 39.0 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 11/116 (9%), Positives = 28/116 (24%), Gaps = 2/116 (1%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + ++ + + V+ GDFNR + + +
Sbjct: 32 QIQAVRAFVAEFGNAHGTARTVLGGDFNRAAADATMKPLTSAYENCVSGATHHGWDNAAK 91
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + S + + + + S H P+
Sbjct: 92 AHRRHEFDHLFVSRPAEGSAFSSCSVESALMDTTENEADSGDPNGFSDHAPVVGRL 147
>gi|190345761|gb|EDK37701.2| hypothetical protein PGUG_01799 [Meyerozyma guilliermondii ATCC
6260]
Length = 1022
Score = 39.0 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 30/129 (23%), Gaps = 28/129 (21%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLL----- 52
+++IK + GDFN +IN + D Q+M
Sbjct: 786 NRRIKDHDAVIWLGDFNYRINLPLEQVHALVEKKDFPRLFEYDQLNQQMASGESFPYFDE 845
Query: 53 ---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
P K + YD SD K S
Sbjct: 846 MELRFKPTYKFDNGTSTYDTSEKQRIPAWTDRILSLSRKKIIKQHLYDCSDEI----KFS 901
Query: 110 THCPLTIEY 118
H P+
Sbjct: 902 DHRPVYATL 910
>gi|320094486|ref|ZP_08026261.1| hypothetical protein HMPREF9005_0873 [Actinomyces sp. oral taxon
178 str. F0338]
gi|319978579|gb|EFW10147.1| hypothetical protein HMPREF9005_0873 [Actinomyces sp. oral taxon
178 str. F0338]
Length = 830
Score = 39.0 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 31/116 (26%), Gaps = 22/116 (18%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
G P ++ GDFN + + G + + V SLD+
Sbjct: 647 AGTPTLLVGDFNSYSKEDP-----LKALTDAGWVH--ESADSAASYVYGGRSGSLDHVFS 699
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRR---------------SKLSTHCPLTIEYD 119
+ + + ++ +S + S H P I D
Sbjct: 700 NAAADPLVRGVASWALNAQESVAFEYSRANSNAHLAFEADNPYRSSDHNPEIIGLD 755
>gi|311106414|ref|YP_003979267.1| endonuclease/exonuclease/phosphatase family protein 1
[Achromobacter xylosoxidans A8]
gi|310761103|gb|ADP16552.1| endonuclease/exonuclease/phosphatase family protein 1
[Achromobacter xylosoxidans A8]
Length = 255
Score = 39.0 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 26/117 (22%), Gaps = 15/117 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + + P +IAGDFN +
Sbjct: 154 KQLRRLCELVTDGVPADEPLLIAGDFND--------------WRLRADALMTGCGTREVF 199
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + S+LS H P+ E
Sbjct: 200 TTRLGRPARTFPARWPLLRLDRIYVRNVRDWQ-PVPLASRVWSRLSDHVPICAEIAL 255
>gi|290969209|ref|ZP_06560734.1| putative exodeoxyribonuclease III [Megasphaera genomosp. type_1
str. 28L]
gi|290780715|gb|EFD93318.1| putative exodeoxyribonuclease III [Megasphaera genomosp. type_1
str. 28L]
Length = 109
Score = 39.0 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 4/71 (5%)
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
D +PQ + R + + F+ + Q+
Sbjct: 38 DTWRHFYPQTADVYSWWSYRFNARKNNAGW--RIDYFITSQDL--TNRLQNAFIYTDIMG 93
Query: 109 STHCPLTIEYD 119
S HCP+ + +D
Sbjct: 94 SDHCPVGLTWD 104
>gi|264677073|ref|YP_003276979.1| endonuclease/exonuclease/phosphatase [Comamonas testosteroni CNB-2]
gi|262207585|gb|ACY31683.1| Endonuclease/exonuclease/phosphatase [Comamonas testosteroni CNB-2]
Length = 307
Score = 39.0 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 36/139 (25%), Gaps = 30/139 (21%)
Query: 2 LSQQGEWLKKWADQKIKTGIPF---------VIAGDFNRKINSIGDTDDFW--------- 43
L Q L Q G P+ V+ GDFN + +
Sbjct: 176 LQMQACALADAPPQPASDGSPYQTKPHTRHAVLCGDFNFEPHEPEYAVLSAPWVAGEEGC 235
Query: 44 ----QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
Q + +L + + V + + + +S + S
Sbjct: 236 LQAGQWRNSWDVLYPGQPQPPTFRLVDRTWGA------EPGACDLIWVSDSLCQRVHTWS 289
Query: 100 DLDTRRSKLSTHCPLTIEY 118
++ S H P+ +
Sbjct: 290 VDS--ATQASDHQPVMLTL 306
>gi|155212609|gb|ABT17368.1| hypothetical protein [uncultured haloarchaeon FLAS10H9]
Length = 620
Score = 39.0 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 13/113 (11%), Positives = 26/113 (23%), Gaps = 19/113 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E + V+ GD N + + F +D +
Sbjct: 521 QAERVVDLVRATGDPDRALVL-GDLNATPDERP-YEVFSTVLDDP----WAGSAPGADTY 574
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
R L+ + + T +S H +++
Sbjct: 575 S---------AADPRRRIDYALVGRGWEARRGEVIGSPT----VSDHLGVSVT 614
>gi|298293932|ref|YP_003695871.1| endonuclease/exonuclease/phosphatase [Starkeya novella DSM 506]
gi|296930443|gb|ADH91252.1| Endonuclease/exonuclease/phosphatase [Starkeya novella DSM 506]
Length = 269
Score = 39.0 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 33/123 (26%), Gaps = 24/123 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L + G+P V+ GDFN + T + L FP +K +
Sbjct: 138 RRQAGMLAAM--ARRVRGMPTVMMGDFNDWFSFGQVTRTMSHVLPERTRLRTFPAQKPA- 194
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE- 121
+ +S H P+ ++
Sbjct: 195 -----------------LRLDRVYCSAPGMLADAFTDPAARA---ISDHLPIIVDLALPA 234
Query: 122 KGN 124
+GN
Sbjct: 235 RGN 237
>gi|183233999|ref|XP_650532.2| exodeoxyribonuclease III [Entamoeba histolytica HM-1:IMSS]
gi|169801308|gb|EAL45146.2| exodeoxyribonuclease III, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 319
Score = 39.0 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 16/141 (11%), Positives = 30/141 (21%), Gaps = 30/141 (21%)
Query: 1 MLSQQGEW---LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------ 45
++ + EW +++ K + GD N + I +
Sbjct: 184 LVKRTTEWDKDMREHLKALQKK-KNVIWCGDLNVALRWIDVAKPMTRLRCAGFTKEERAS 242
Query: 46 -------MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID-RDNKNFLIDNSFSIVSYD 97
++ +K S D F +
Sbjct: 243 TNETIKELNLVDTFQVKYPKKRDF----YTFFSFKDKSKTAGWRLDYFFVSKDLVDSVTQ 298
Query: 98 QSDLDTRRSKLSTHCPLTIEY 118
+ S H PL I
Sbjct: 299 I--YRRKEISASDHVPLIIHI 317
>gi|86143416|ref|ZP_01061818.1| hypothetical protein MED217_09540 [Leeuwenhoekiella blandensis
MED217]
gi|85830321|gb|EAQ48781.1| hypothetical protein MED217_09540 [Leeuwenhoekiella blandensis
MED217]
Length = 193
Score = 39.0 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 18/119 (15%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + + K+ + + ++AGDFN + S F ++
Sbjct: 93 FKKQEDQVYKFLAHQAECPYKKIVAGDFNNTVFSYTYNKI------RGDKKDAFEEQGSG 146
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ VI L D F ++ D++ S H P+ +
Sbjct: 147 FGRTF-------IFDVIPLRIDFILTDPEFKTQAFQNFDVEY-----SDHFPIMAVLEL 193
>gi|329940786|ref|ZP_08290066.1| large secreted protein [Streptomyces griseoaurantiacus M045]
gi|329300080|gb|EGG43978.1| large secreted protein [Streptomyces griseoaurantiacus M045]
Length = 608
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 29/121 (23%), Gaps = 17/121 (14%)
Query: 5 QGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + ++ + GD N S + ++ G L + +
Sbjct: 498 QATEVNAFVKDILEAQRNARVIALGDLNDFEFSG-----TARLLEDGGALWSAIKSLPKS 552
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFS-IVSYDQSDLDTRRSKL---STHCPLTIEY 118
+ + LI S +Y + S H P +
Sbjct: 553 ERYTYDYQ------GNSQVLDQILISPSLRRPGAYAYDSVHLNAEFPTQISDHDPQVLRI 606
Query: 119 D 119
Sbjct: 607 R 607
>gi|290998866|ref|XP_002682001.1| predicted protein [Naegleria gruberi]
gi|284095627|gb|EFC49257.1| predicted protein [Naegleria gruberi]
Length = 450
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 31/121 (25%), Gaps = 4/121 (3%)
Query: 4 QQGEWLKKW--ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK-E 60
+Q + L + +I GDFN S I +
Sbjct: 331 EQAKVLANRSDMTKLECACENVIIGGDFNASQESQAYQVVEQAGFKSAIKEIHGKEPTIT 390
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ I R+ L Y + + + + + S H P+ ++
Sbjct: 391 FNTDAIHRSIDYLWY-NCSTIMPSTCTIFNQKQIEIKKEEALPNHQYGSDHIPIFAKFVL 449
Query: 121 E 121
Sbjct: 450 N 450
>gi|260173205|ref|ZP_05759617.1| hypothetical protein BacD2_15145 [Bacteroides sp. D2]
gi|315921479|ref|ZP_07917719.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313695354|gb|EFS32189.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 608
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 24/99 (24%), Gaps = 17/99 (17%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P +AGD N + S + K I ++ + +
Sbjct: 164 KPLFLAGDMNAEPESD------FIKELQKDFQILSNPKQSTYPAPDPK-----------E 206
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
S + S S H P+ +E
Sbjct: 207 TIDYITALKSNANGFALISSQVLDEPMASDHRPILVELR 245
>gi|229495004|ref|ZP_04388753.1| endonuclease/exonuclease/phosphatase [Rhodococcus erythropolis
SK121]
gi|229318098|gb|EEN83970.1| endonuclease/exonuclease/phosphatase [Rhodococcus erythropolis
SK121]
Length = 295
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 13 ADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ T + P VIAGDFN ++ ++ + G Q N N S
Sbjct: 200 IRALLDTNLNPLVIAGDFNATVDHRQ-----FRGLLHGGTQDAARQAGRFYVNTFPANWS 254
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ L+ + ++D T S H +
Sbjct: 255 WPP----FAALDHILVPPELTATTFD-----TVEIAGSDHLAIVSTL 292
>gi|190344366|gb|EDK36033.2| hypothetical protein PGUG_00131 [Meyerozyma guilliermondii ATCC
6260]
Length = 364
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 21/140 (15%), Positives = 34/140 (24%), Gaps = 25/140 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-----DGLLIRFPQ 57
+ + + P + GDFN + M D L
Sbjct: 221 RHSAQLIAN--KMENYNNYPSFLCGDFNTQPTDEPYQILIKHGMKDSRALIDHLHHYGHT 278
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV----SYDQSDLDT---------- 103
+ N S +DY +N S Y+ T
Sbjct: 279 GTFTGFNKHNEANSVIDYVWAPYFAENGNDQPSMETTESINYYNWDFHKTHKIALRSFAI 338
Query: 104 ----RRSKLSTHCPLTIEYD 119
+S H P++ +YD
Sbjct: 339 LHSYYDFYMSDHRPVSADYD 358
>gi|308505902|ref|XP_003115134.1| CRE-EXO-3 protein [Caenorhabditis remanei]
gi|308259316|gb|EFP03269.1| CRE-EXO-3 protein [Caenorhabditis remanei]
Length = 334
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 9/97 (9%), Positives = 23/97 (23%), Gaps = 21/97 (21%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------------------MDPDGLLIRF 55
+++ P + GD N N I + + M +
Sbjct: 118 KEMNEKKPVIYGGDLNVAHNEIDLKNPESNRNKTAGFTDQERGWFTDMLNMGFTDTFRQM 177
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
E + ++ + +++ N
Sbjct: 178 HPESKKYSFWSY--LANSREKDVGWRLDYYVVSNRIM 212
>gi|307130571|ref|YP_003882587.1| Endonuclease/Exonuclease/phosphatase family protein [Dickeya
dadantii 3937]
gi|306528100|gb|ADM98030.1| Endonuclease/Exonuclease/phosphatase family protein [Dickeya
dadantii 3937]
Length = 256
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 31/118 (26%), Gaps = 15/118 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ L + P ++AGDFN + + +E
Sbjct: 154 RQQMALLCDLL-ATLPAEAPLIVAGDFND-------WQMKANALLKRSAGL-----EEVF 200
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + N+ + V S LS H PL +E
Sbjct: 201 SQHFGKPARTFPARFPLLCLDRIYVRNARTSVPRLLPPKPW--SHLSDHAPLAVEIHL 256
>gi|300708619|ref|XP_002996485.1| hypothetical protein NCER_100420 [Nosema ceranae BRL01]
gi|263405112|sp|C4V7I7|CCR4_NOSCE RecName: Full=Probable glucose-repressible alcohol dehydrogenase
transcriptional effector homolog; AltName: Full=Carbon
catabolite repressor protein 4; AltName:
Full=Cytoplasmic deadenylase
gi|239605791|gb|EEQ82814.1| hypothetical protein NCER_100420 [Nosema ceranae BRL01]
Length = 476
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 33/124 (26%), Gaps = 17/124 (13%)
Query: 5 QGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGD---------------TDDFWQKMD 47
Q L + ++ K V+ GDFN NS + +
Sbjct: 342 QAIILLEELEKVSKCYKNPSIVLLGDFNSLQNSSVYSFITQNSVSNTNLCKYNIGFIPGH 401
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
L + E+ N K +D+ + I ++ DQ
Sbjct: 402 FLKLSDAYLSEENDFTNFTPTFKGVIDFIFYSDTLELRSILSTIENEYCDQVVGLPNIHF 461
Query: 108 LSTH 111
S H
Sbjct: 462 PSDH 465
>gi|295672866|ref|XP_002796979.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Paracoccidioides brasiliensis Pb01]
gi|226282351|gb|EEH37917.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Paracoccidioides brasiliensis Pb01]
Length = 1237
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 17/125 (13%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDT----------------DDFWQKMDPDGLLIRFPQ 57
++ I+ + GDFN +I D D +M + +
Sbjct: 787 NRSIEDHDAIIWLGDFNYRIGLPNDRVRGLIKDGDLETLYENDQLNLQMVAGLTFPFYSE 846
Query: 58 EKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + N + L + + + Q + + K S H P+
Sbjct: 847 ARITFPPTYKYDNGTDLYDTSEKARIPAWCDRVLWKGGNLRQLEYNAASLKFSDHRPVYA 906
Query: 117 EYDFE 121
+D E
Sbjct: 907 TFDCE 911
>gi|194290013|ref|YP_002005920.1| hypothetical protein RALTA_A1916 [Cupriavidus taiwanensis LMG
19424]
gi|193223848|emb|CAQ69857.1| conserved hypothetical protein;
Endonuclease/Exonuclease/phosphatase family [Cupriavidus
taiwanensis LMG 19424]
Length = 284
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 30/139 (21%), Gaps = 27/139 (19%)
Query: 5 QGEWLKKWADQKIKTGIP-------------------FVIAGDFNRKINSIGDTDDFWQK 45
Q E L+ W Q ++ GDFN K + I
Sbjct: 150 QAEALRDWHVQACDHASRPGRSEKWPGPFTPEPRPAEAILCGDFNSKPDDIAYRRMLEPF 209
Query: 46 MDPDGLLIRFP----QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
D +K D + + I + +
Sbjct: 210 DDTTTPWRDAWLHAHPGLPHAPTCAIHDKEQWPEPPFACDFMFVTENLAARIRRCEVNAD 269
Query: 102 DTRRSKLSTHCPLTIEYDF 120
S H P+ + D
Sbjct: 270 TAD----SDHQPILLSLDL 284
>gi|33591896|ref|NP_879540.1| putative endonuclease/exonuclease/phosphatase family protein
[Bordetella pertussis Tohama I]
gi|33571540|emb|CAE41020.1| putative endonuclease/exonuclease/phosphatase family protein
[Bordetella pertussis Tohama I]
gi|332381313|gb|AEE66160.1| putative endonuclease/exonuclease/phosphatase family protein
[Bordetella pertussis CS]
Length = 286
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 35/151 (23%), Gaps = 35/151 (23%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINS---------------------------- 35
+Q + L Q + G P +I GDFN +
Sbjct: 138 RQIQALTDRIRQSVPDGAPLLIVGDFNDWGDRLAPMFVQQLGLYEVFSHAPRSHGGDLPR 197
Query: 36 -----IGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS 90
+ + +L R Q +
Sbjct: 198 LRDSVRRLGNVLRGVPNSVAVLERNNQLGMGGAYCPLPPPRTFPAVFPWFRLDRIYQR-G 256
Query: 91 FSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
F++ S ++LS H PL E +
Sbjct: 257 FAVRSARVLRG-REWARLSDHSPLLAELELP 286
>gi|116205517|ref|XP_001228569.1| hypothetical protein CHGG_10642 [Chaetomium globosum CBS 148.51]
gi|88176770|gb|EAQ84238.1| hypothetical protein CHGG_10642 [Chaetomium globosum CBS 148.51]
Length = 928
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 29/114 (25%), Gaps = 21/114 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ--------KMDPDGLLIRFPQEKESTCN 64
+ + P V+AGDFN + D+F + + + +
Sbjct: 117 LQGRPRPDHPVVLAGDFNLQH---PLWDEFGRYERGAEDLLQLSSLWDLTIRTPRGAVT- 172
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+F V Y + + S H P +E
Sbjct: 173 ----RAPQGRQRGRTSTIDHFWASECIHTVYYGE--ECRGK---SDHYPQMLEI 217
>gi|332308357|ref|YP_004436208.1| hypothetical protein Glaag_4016 [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175686|gb|AEE24940.1| hypothetical protein Glaag_4016 [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 325
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 16/112 (14%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
K+ A ++ +P +++GD N Q L + + N
Sbjct: 230 KEIAQNDSESALPVLVSGDLNDVA-----WSPTTQAFLRISGLCDPRIGRGAF------N 278
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + F++VS L S H PL E +
Sbjct: 279 TFHAQHVFARWPLDHMFHSDDFALVS-----LSRLPEIGSDHFPLLTELCLK 325
>gi|311898258|dbj|BAJ30666.1| hypothetical protein KSE_48880 [Kitasatospora setae KM-6054]
Length = 302
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 4/115 (3%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q +++W P+++ GDFN I ++ T + T
Sbjct: 191 QLAAIRRWIADL---PQPYLVLGDFN-LIGAVPRTVLGSAHAIQRTARRERVRTARRTRL 246
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + R F + + R+ +S H PL ++ +
Sbjct: 247 QGWYDLARTPTYPSHRPTVQFDHILGIGVPRSTVGSVAAPRTPVSDHRPLVVDIE 301
>gi|206977785|ref|ZP_03238675.1| sphingomyelin phosphodiesterase C [Bacillus cereus H3081.97]
gi|206743982|gb|EDZ55399.1| sphingomyelin phosphodiesterase C [Bacillus cereus H3081.97]
Length = 333
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 32/137 (23%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + + I + GD N NS + ++ +
Sbjct: 198 QLKEIQDFIENKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKILQPKSPQWTVTSWLKKYTY 317
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 DDY-SDHYPVAATISMK 333
>gi|145351707|ref|XP_001420209.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580442|gb|ABO98502.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 349
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 25/132 (18%), Gaps = 17/132 (12%)
Query: 3 SQQGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKM---DPDGLLIRFPQ 57
+ L +A + +IAGD N N + M D +
Sbjct: 215 KELCRHLNAFATSLCADVDKVQIIIAGDLNATPNEACVVHLRGRGMRNAYEDMSAALGDK 274
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS----------- 106
R V L + L
Sbjct: 275 NSNRFSTWKTRTGLFKTGEVKHT-IDYILYSAHRGSKVVSVAKLPDESEIPSDVGLPTFG 333
Query: 107 KLSTHCPLTIEY 118
S H PL
Sbjct: 334 FPSDHLPLQARI 345
>gi|71423692|ref|XP_812538.1| apurinic/apyrimidinic endonuclease [Trypanosoma cruzi strain CL
Brener]
gi|70877328|gb|EAN90687.1| apurinic/apyrimidinic endonuclease [Trypanosoma cruzi]
Length = 401
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 25/119 (21%), Gaps = 25/119 (21%)
Query: 23 FVIAGDFNRK----------------------INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
F+ AGD N + + + K
Sbjct: 285 FIWAGDLNVAERDYDRYFAGSYKAMQKCSGFTPEERASFRETLRVANAVDTFRALYP-KA 343
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + F++ + + S HCPL +
Sbjct: 344 APVYTFWSARINGRARGLGWRLDYFVVSAALARH--VVDCFTMPHVMGSDHCPLQMWLR 400
>gi|261193611|ref|XP_002623211.1| DNA lyase Apn2 [Ajellomyces dermatitidis SLH14081]
gi|239588816|gb|EEQ71459.1| DNA lyase Apn2 [Ajellomyces dermatitidis SLH14081]
Length = 629
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 15/149 (10%), Positives = 31/149 (20%), Gaps = 43/149 (28%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIG------------------------------- 37
L + G ++ GD N + I
Sbjct: 169 LDARVRNLVAMGKRVIVTGDLNICGSEIDSARALEEIRKGNLTDSEFVSAPVRRVFNQLV 228
Query: 38 -------DTDDFWQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
D D + L ++ ++ +R + + D
Sbjct: 229 YGGKVIGDRDQGRETPILVDLCRKYHPDRPGMYTCWEQRVNARPGNYGSRIDYVLCDKRM 288
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S HCP+ +
Sbjct: 289 EDWFSASNI----QEGLMGSDHCPVFADL 313
>gi|116200341|ref|XP_001225982.1| hypothetical protein CHGG_08326 [Chaetomium globosum CBS 148.51]
gi|88179605|gb|EAQ87073.1| hypothetical protein CHGG_08326 [Chaetomium globosum CBS 148.51]
Length = 1647
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 29/112 (25%), Gaps = 19/112 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ-------KMDPDGLLIRFPQEKESTCNV 65
+ + P V+AGDFN K D F + + L +
Sbjct: 667 LQGQPRPSHPVVLAGDFNLK---NPLWDGFGRYDRKSEDLLQLGSLWDLTIRTPRGAT-- 721
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+F + V Y + + S H P +E
Sbjct: 722 --TRAPQGRQRGRPSTIDHFWTSENLQTVYYGE--ECRGK---SDHYPQVLE 766
>gi|311900561|dbj|BAJ32969.1| hypothetical protein KSE_72140 [Kitasatospora setae KM-6054]
Length = 296
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 29/117 (24%), Gaps = 10/117 (8%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q +++W P ++ GDFN + P G
Sbjct: 190 RQLLAVRRWIADL---PRPHLLLGDFNLGGRLPATALRAADLLTPAGAGTPGGPAG---- 242
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + L + L R LS H PL ++
Sbjct: 243 WHDLARARTFPAHRPRLQLDHILASGLPRDHPHTAHYL---RLPLSDHRPLVVDLPL 296
>gi|265762754|ref|ZP_06091322.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263255362|gb|EEZ26708.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 285
Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 11/107 (10%), Positives = 24/107 (22%), Gaps = 4/107 (3%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++I ++ GDFN + ++
Sbjct: 182 KEIAGTHSAMMTGDFNVSEEWEAYKTITSNEFVLKDAWKIAGKQSGEN-YTFHDFGRVP- 239
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYDF 120
+ + + S T + LS H + +F
Sbjct: 240 -VAEREKIDFIFVTPQIKVADAEIISSAITDSTYLSDHNAHLADLEF 285
>gi|255729400|ref|XP_002549625.1| hypothetical protein CTRG_03922 [Candida tropicalis MYA-3404]
gi|240132694|gb|EER32251.1| hypothetical protein CTRG_03922 [Candida tropicalis MYA-3404]
Length = 430
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 34/115 (29%), Gaps = 18/115 (15%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS-------SLD 74
P GD N + NS + + L+ + + S +V ++D
Sbjct: 309 PSFFCGDLNLEPNSKPHKKLTSELVSSVELVTPYNRYGHSWSSVTGFQGQVLKEGGQNID 368
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDT-----------RRSKLSTHCPLTIEY 118
Y + ++ + S S + +S H P+ +Y
Sbjct: 369 YIFAPKYAQSIDKETECSGNSVFDNIDLRLYQYGMLHSKFNGRYISDHRPIVADY 423
>gi|225706090|gb|ACO08891.1| Deoxyribonuclease-1 precursor [Osmerus mordax]
Length = 287
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 6/119 (5%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q+ + L A + ++ GDFN + + ++ ++ D +
Sbjct: 166 QEVDALYDVAADVRVRWNTNDIILLGDFNAGCSYVTSSEWVKIRLFTDKSYHWLITDDVD 225
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL--DTRRSKLSTHCPLTIEY 118
T D V D L S + +Y ++ + +S H P+ +E
Sbjct: 226 TTV--SNTVCPYDRIVATTDMMRGLATGSARVFNYMEALKLSHSLALGVSDHYPVEVEL 282
>gi|190344380|gb|EDK36047.2| hypothetical protein PGUG_00145 [Meyerozyma guilliermondii ATCC
6260]
Length = 497
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 28/122 (22%), Gaps = 22/122 (18%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P + GD N + N Q + L F + S V L + D
Sbjct: 370 PSFLCGDLNTEPNEKAYQIITEQFRNSAKLTTAFNKYGHSKSTVTGFEGEVLLNGGQNID 429
Query: 82 NKNFL----------------------IDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S+ +S H P+ ++
Sbjct: 430 YIFAPSYTAKLGETVLCDKLTTSPPSERYLDLRLKSFGMLHSKFNGLYMSDHRPIVADFT 489
Query: 120 FE 121
+
Sbjct: 490 LK 491
>gi|94497212|ref|ZP_01303784.1| metal-dependent hydrolase [Sphingomonas sp. SKA58]
gi|94423317|gb|EAT08346.1| metal-dependent hydrolase [Sphingomonas sp. SKA58]
Length = 232
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 13/103 (12%), Positives = 27/103 (26%), Gaps = 19/103 (18%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+P ++ GD N + G DF + F +
Sbjct: 149 ESLPTILMGDLNEWSANGGCLADFGRHYSFAPCGRSFHARRP------------------ 190
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + ++ + K S H P+ E+ +
Sbjct: 191 VARLDRIMHCSQLTLKTCGVH-ESAAARKASDHLPIWAEFSVD 232
>gi|299532507|ref|ZP_07045897.1| Endonuclease/exonuclease/phosphatase [Comamonas testosteroni S44]
gi|298719454|gb|EFI60421.1| Endonuclease/exonuclease/phosphatase [Comamonas testosteroni S44]
Length = 291
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 36/139 (25%), Gaps = 30/139 (21%)
Query: 2 LSQQGEWLKKWADQKIKTGIPF---------VIAGDFNRKINSIGDTDDFW--------- 43
L Q L Q G P+ V+ GDFN + +
Sbjct: 160 LQMQACALADAPPQPASDGSPYQTKPHTRHAVLCGDFNFEPHEPEYAVLSAPWVAGEEGC 219
Query: 44 ----QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
Q + +L + + V + + + +S + S
Sbjct: 220 LQAGQWRNSWDVLYPGQPQPPTFRLVDRTWGA------EPGACDLIWVSDSLCQRVHTWS 273
Query: 100 DLDTRRSKLSTHCPLTIEY 118
++ S H P+ +
Sbjct: 274 VDS--ATQASDHQPVMLTL 290
>gi|295134450|ref|YP_003585126.1| Endonuclease/exonuclease/phosphatase [Zunongwangia profunda SM-A87]
gi|294982465|gb|ADF52930.1| Endonuclease/exonuclease/phosphatase [Zunongwangia profunda SM-A87]
Length = 284
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 31/114 (27%), Gaps = 21/114 (18%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
L+ + P ++ GDFN + G L+ +
Sbjct: 153 ALRTY-----DAHYPVIVMGDFNDVA-----WSQTTRIFRKVGGLLDLRIGRGFF----- 197
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
N S + F++ + F + + S H P E +E
Sbjct: 198 -NTFSANNFIMRWPLDHVFTTEEFRVKRIEV-----GHDIGSDHFPAFAEITYE 245
>gi|218189268|gb|EEC71695.1| hypothetical protein OsI_04192 [Oryza sativa Indica Group]
Length = 534
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 30/140 (21%), Gaps = 22/140 (15%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFN--RKINSIG--------DTDDFW------- 43
+ S+ + +KI + GD N ++ + D +
Sbjct: 317 LFSRICRRGVRKIPEKILEHDKVIWFGDLNYRIALSYADTKKFLMENNWDALFERDQLKI 376
Query: 44 -----QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ 98
+ F S R + + Q
Sbjct: 377 ERDAGRVFKGWNEGKIFFAPTYKYSYNSDAYASETATSNKKRRTPAWCDRILWHGDGILQ 436
Query: 99 SDLDTRRSKLSTHCPLTIEY 118
S+ S H P+ +
Sbjct: 437 LSYYRGESRFSDHRPVCGTF 456
>gi|168009285|ref|XP_001757336.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691459|gb|EDQ77821.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 469
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 34/128 (26%), Gaps = 22/128 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDF------WQKMDPDGLLIRFPQEKESTCNVI 66
+ I + GD N +I+ W+ + P L
Sbjct: 295 LPETIMAHDRIIWLGDLNYRIDLPDKETWILVNQCDWKSLLPRDQLRMERDAGRVFKGWH 354
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR----------------RSKLST 110
+ S + ++ + + +F R +++LS
Sbjct: 355 EDAISFPPTYKFVEESDQYFGEYTFKGDRRRTPAWCDRILSHGKGLRQLSYSMVQARLSD 414
Query: 111 HCPLTIEY 118
H P+ ++
Sbjct: 415 HRPVVAKF 422
>gi|116252933|ref|YP_768771.1| exo/endo phosphatase [Rhizobium leguminosarum bv. viciae 3841]
gi|115257581|emb|CAK08678.1| putative exo/endo phosphatase [Rhizobium leguminosarum bv. viciae
3841]
Length = 369
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 20/83 (24%), Gaps = 7/83 (8%)
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY----DQSDL 101
+D L +++ C + S + + +
Sbjct: 287 LDRWTLYHARGPQEQWLCQLDYLWLSPALAAHNAGRLPEIIRSGQPYRTIFPPGQEVERY 346
Query: 102 DTRRS---KLSTHCPLTIEYDFE 121
K S HCP+ + D
Sbjct: 347 PRTGWDRPKASDHCPVVMTLDLP 369
>gi|2393783|gb|AAD11456.1| AP-endonuclease [Trypanosoma cruzi]
Length = 405
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 25/119 (21%), Gaps = 25/119 (21%)
Query: 23 FVIAGDFNRK----------------------INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
F+ AGD N + + + K
Sbjct: 289 FIWAGDLNVAERDYDRYFAGSYKAMQKCSGFTPEERASFRETLRVANAVDTFRALYP-KA 347
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + F++ + + S HCPL +
Sbjct: 348 APVYTFWSARINGRARGLGWRLDYFVVSAALARH--VVDCFTMPHVMGSDHCPLQMWLR 404
>gi|66800503|ref|XP_629177.1| hypothetical protein DDB_G0293350 [Dictyostelium discoideum AX4]
gi|60462558|gb|EAL60764.1| hypothetical protein DDB_G0293350 [Dictyostelium discoideum AX4]
Length = 1147
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN + +K+ + E R+ LD
Sbjct: 136 IIAGDFNNNHDCNSFFGTELRKIIDQDM--LLDTGIEENTQTFPRSMKRLDRIYCHPTLL 193
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N +++ S H P+TI
Sbjct: 194 NQNSKLVVHNTVFNK----------SDHFPITITIQ 219
>gi|296133066|ref|YP_003640313.1| Endonuclease/exonuclease/phosphatase [Thermincola sp. JR]
gi|296031644|gb|ADG82412.1| Endonuclease/exonuclease/phosphatase [Thermincola potens JR]
Length = 224
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 30/115 (26%), Gaps = 27/115 (23%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E L + P ++ GDFN + + + + + + +
Sbjct: 136 QIETLAGLIRGERT---PVILMGDFNAFTDELRPLEGLVRDLGVNSGPTFPADNPTA--- 189
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L+ + S + + D S H P+ +
Sbjct: 190 ----------------RIDYILVSENIVDYSLEVINSD-----ASDHLPVLATLE 223
>gi|306825594|ref|ZP_07458933.1| RgfB protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|304431955|gb|EFM34932.1| RgfB protein [Streptococcus sp. oral taxon 071 str. 73H25AP]
Length = 271
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 24/106 (22%), Gaps = 2/106 (1%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ P ++AGDFN G + ++ S +
Sbjct: 168 LKELNKPLILAGDFNNPAGQEGYQAILASPLGLQD--ALEVAKERSGSYTVPPEIDGWKG 225
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ S ++S H L ++
Sbjct: 226 NTEPLRIDYVFTTKDLEVESLHVVFDGQNGPQVSDHYGLNAVLTWK 271
>gi|218667695|ref|YP_002425139.1| endonuclease/exonuclease/phosphatase family protein
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|218519908|gb|ACK80494.1| endonuclease/exonuclease/phosphatase family protein
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 250
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 39/124 (31%), Gaps = 24/124 (19%)
Query: 2 LSQQGE--WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
LS+ ++ Q+++ ++ GD N S + + + L P
Sbjct: 141 LSRHARLSQIRD-LAQRLRGRPNLILMGDLNCTARSPE-----MRLLLNESGLQAPPWSP 194
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + R D+ + D + +I +T LS H L +
Sbjct: 195 PTFPSWSPRFS--FDHILCSPDLEFTMI--------------ETVTEPLSDHLALKAKLR 238
Query: 120 FEKG 123
++
Sbjct: 239 WDSA 242
>gi|108706307|gb|ABF94102.1| Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative,
expressed [Oryza sativa Japonica Group]
Length = 675
Score = 38.7 bits (88), Expect = 0.25, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 32/133 (24%), Gaps = 22/133 (16%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIR---------FPQEK 59
+ I + GD N ++ W+ + L E
Sbjct: 502 ETILEHERIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQLRIEQRGGRVFVGWNEG 561
Query: 60 ESTCNVIKRNKSSLD-------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + ++ D + + + Q S+ S H
Sbjct: 562 KIYFPPTYKYSNNSDKYAGDDMNQKEKKRTPAWCDRILWYGRGLSQLSYVRGESRFSDHR 621
Query: 113 PLTIEYDFEKGNV 125
P+ + E ++
Sbjct: 622 PVYSVFSAEVESI 634
>gi|326527959|dbj|BAJ89031.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 307
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 8/74 (10%), Positives = 16/74 (21%)
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
F + + R + R + + +Q
Sbjct: 189 FGRVFAGWKEGRIYFPPTYKYSYNSDRYAGDDMHPNEKRRTPAWCDRILWYGRGLNQLCY 248
Query: 102 DTRRSKLSTHCPLT 115
S+ S H P+
Sbjct: 249 VRGESRFSDHRPVY 262
>gi|311032107|ref|ZP_07710197.1| endonuclease/exonuclease/phosphatase [Bacillus sp. m3-13]
Length = 264
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 1/107 (0%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+K+K P+ + GDFN + G+ +F EK+S V +
Sbjct: 158 LIEKVKGTEPYFLLGDFNNSAHIKGEGYEFLTSTAGLHDTYLLASEKDSGVTVEGKIAGW 217
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D L + S+ S R +S H + + +
Sbjct: 218 DENK-QDLRIDLILASSPPSVTSSKVVFNGQNREVVSDHYGVEVTLE 263
>gi|270307561|ref|YP_003329619.1| endonuclease/exonuclease/phosphatase family [Dehalococcoides sp.
VS]
gi|270153453|gb|ACZ61291.1| endonuclease/exonuclease/phosphatase family [Dehalococcoides sp.
VS]
Length = 639
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 27/117 (23%), Gaps = 23/117 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + VI GDFN + NS + GL +
Sbjct: 546 QAGELADF----WDNAPSTVILGDFNAEPNSAEIG-----LLRQAGLSDSLEGQTSVLTY 596
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+DY D FS+ S H + +
Sbjct: 597 HSADLYQRIDYIWASPDIVYVDSFTIFSL--------------ASDHLAVIADIRLS 639
>gi|147787725|emb|CAN71912.1| hypothetical protein VITISV_018965 [Vitis vinifera]
Length = 1856
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 17/107 (15%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD---------FWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
G P+ + GDFN + + F Q MD L+ Q S
Sbjct: 253 GDPWCVGGDFNVILAQGERSRQGRVTSAMRRFAQVMDDLELIDLPLQG-GSFTW------ 305
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
S + FL+ S+ + + +S H P+ IE
Sbjct: 306 SGGLHNQAWARLDRFLVSPSW-LDQFSSVTQKRLSRPISDHFPIIIE 351
>gi|332520200|ref|ZP_08396664.1| Endonuclease/exonuclease/phosphatase [Lacinutrix algicola 5H-3-7-4]
gi|332044759|gb|EGI80953.1| Endonuclease/exonuclease/phosphatase [Lacinutrix algicola 5H-3-7-4]
Length = 321
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 11/135 (8%), Positives = 35/135 (25%), Gaps = 19/135 (14%)
Query: 4 QQGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + + + + + ++ GDFN +S + + +++ +
Sbjct: 185 KASQKVTEIITELKEKNSEAKIIVMGDFNDDPSSKSIKSLELSHGLFNPMRTLLSRDRGT 244
Query: 62 TCN-----------VIKRNKSSLDYFVIDRDNK------NFLIDNSFSIVSYDQSDLDTR 104
T + + + + D+ + Y
Sbjct: 245 TSHNQRWNLFDQVLITHNFFERKKNALRFVNANIFDEDFLKERDSKYKGSPYRTYVGKRY 304
Query: 105 RSKLSTHCPLTIEYD 119
+ S H P+ +
Sbjct: 305 KGGYSDHFPVYLILS 319
>gi|315022344|gb|EFT35372.1| hypothetical protein RAYM_06065 [Riemerella anatipestifer RA-YM]
gi|325336528|gb|ADZ12802.1| non-specific nuclease [Riemerella anatipestifer RA-GD]
Length = 308
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 26/122 (21%), Gaps = 19/122 (15%)
Query: 17 IKTGIPFVIAGDFNRKINSIGD-------------TDDFWQKMDPDGLLIRFPQEKESTC 63
IK ++ GDFN N + F +E
Sbjct: 182 IKDKEAVLVLGDFNENPNEDNLIQFTYHEGILELLHNPFSALYYLGNYSTYHKKEGLLFD 241
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS------YDQSDLDTRRSKLSTHCPLTIE 117
++ F + + S H P+ +E
Sbjct: 242 QIMFSRDFFQTSFGLTYKKAEVFNPTEIKNWDKMKNRPFRTYSGTRYLGGYSDHFPVLVE 301
Query: 118 YD 119
++
Sbjct: 302 FE 303
>gi|298376437|ref|ZP_06986392.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
gi|298266315|gb|EFI07973.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
Length = 628
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 32/121 (26%), Gaps = 27/121 (22%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L ++ P IAGD+N +S + + ++
Sbjct: 173 ILRREA----------ASAHKPLFIAGDWNATAHSP------FITEISKDFQLLSNPKQA 216
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + +D F+ +S + S H P+ E
Sbjct: 217 TF-------PAFTPDSCLDYIAGYVKNGQPFTRLSAWVPEEAV----ASDHRPVVTEVRL 265
Query: 121 E 121
+
Sbjct: 266 K 266
>gi|293190142|ref|ZP_06608680.1| 5'-nucleotidase family protein [Actinomyces odontolyticus F0309]
gi|292821118|gb|EFF80070.1| 5'-nucleotidase family protein [Actinomyces odontolyticus F0309]
Length = 788
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 21/131 (16%), Positives = 35/131 (26%), Gaps = 24/131 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L +A + P ++ GDFN + ++ G +
Sbjct: 580 QATSLASFAARF--ADKPTLLVGDFNSYSQEDPI-----KALEASGWARVSGAGEA--SY 630
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR---------------SKLS 109
V SLD+ + K L + V+ +S + S
Sbjct: 631 VYAGRSGSLDHVFSNAAAKPLLSGVTSWAVNAQESIAFEYSRAGMNAHLTIEADNPYRSS 690
Query: 110 THCPLTIEYDF 120
H P I
Sbjct: 691 DHNPEIIGLTL 701
>gi|282859591|ref|ZP_06268695.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
bivia JCVIHMP010]
gi|282587642|gb|EFB92843.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
bivia JCVIHMP010]
Length = 326
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 15/119 (12%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
I +I GDFN +S + M + ++ + SLD+
Sbjct: 209 IDVHAKMLIMGDFNDYSDSPSLQKLYVHNMLDVSANAQGTHGAKA-TYRYQGEWGSLDHI 267
Query: 77 VIDRDNKNFLIDNSFSIVSY--------------DQSDLDTRRSKLSTHCPLTIEYDFE 121
++ + + + D + + + S H PL ++ F+
Sbjct: 268 LVSGNLLSNVKDCYINDAPFLLEPDTKYGGVKPRRNYNGMRYNHGFSDHLPLVLKLVFK 326
>gi|281211659|gb|EFA85821.1| hypothetical protein PPL_01052 [Polysphondylium pallidum PN500]
Length = 610
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 31/117 (26%), Gaps = 20/117 (17%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD----- 74
P + GD N +S + ++ + ++S + N+
Sbjct: 452 ESPQIFVGDLNSVPDSHAIQFLVGKVVENNQTGDF----QDSFTDWTSTNRPVDFVGTYS 507
Query: 75 --YFVIDRDNKNFLID-NSFSIVSYDQ--------SDLDTRRSKLSTHCPLTIEYDF 120
++ + +V + Q D R S H L Y +
Sbjct: 508 TLGGTPNKRIDYIMKRGAELELVDFKQLGSEPQPADDDPNREVYASDHLSLVATYKW 564
>gi|71002678|ref|XP_756020.1| endonuclease/exonuclease/phosphatase family protein [Aspergillus
fumigatus Af293]
gi|66853658|gb|EAL93982.1| endonuclease/exonuclease/phosphatase family protein [Aspergillus
fumigatus Af293]
gi|159130073|gb|EDP55187.1| endonuclease/exonuclease/phosphatase family protein [Aspergillus
fumigatus A1163]
Length = 300
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 10/105 (9%), Positives = 20/105 (19%), Gaps = 9/105 (8%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
+AGDFN + + +
Sbjct: 196 VFLAGDFNSQETQEAYNVLTGSESSLVDTAKVVEPSQHYGNY--YTWTGFGYEGEDPTRI 253
Query: 83 KNFLIDNSFSIVSYDQ-------SDLDTRRSKLSTHCPLTIEYDF 120
LI + + ++ LS H + +
Sbjct: 254 DYILIGPGKNKLGSWIVNGYAVLANRFDSGVFLSDHRAVVADITL 298
>gi|307702031|ref|ZP_07639039.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
mitis NCTC 12261]
gi|307616676|gb|EFN95865.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
mitis NCTC 12261]
Length = 271
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 11/106 (10%), Positives = 27/106 (25%), Gaps = 2/106 (1%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ P ++AGDFN G + ++S +
Sbjct: 168 LKELNKPLLLAGDFNNPAGQEGYQAILASPLGLQDAFEVAQ--EKSGSYTVPPEIDGWKG 225
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ + + ++S H L +++
Sbjct: 226 NTEPLRIDYVFTTKELAVENLHVVFDGNKSPQVSDHYGLNAILNWK 271
>gi|197104868|ref|YP_002130245.1| hypothetical protein PHZ_c1402 [Phenylobacterium zucineum HLK1]
gi|196478288|gb|ACG77816.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1]
Length = 324
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 12/101 (11%), Positives = 28/101 (27%), Gaps = 13/101 (12%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD-YFV 77
++AGDFN + + D +++ + K +
Sbjct: 230 PRERTIVAGDFNSAP-------WSFSRRRWDAEFGLIRRDRALLTWPALQYKRLRWLGWF 282
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + ++ VS + S H P+ +
Sbjct: 283 PFLAIDHVYAGSDWATVSVE-----RGPRLGSDHYPVVMSL 318
>gi|24372731|ref|NP_716773.1| hypothetical protein SO_1148 [Shewanella oneidensis MR-1]
gi|24346800|gb|AAN54218.1|AE015559_2 hypothetical protein SO_1148 [Shewanella oneidensis MR-1]
Length = 377
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 42/164 (25%), Gaps = 44/164 (26%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKIN---------------SIGDTDDFWQKMD 47
++ ++ P ++ GDFN ++ S +
Sbjct: 214 AEAALLFHAILARRQSRRYPVILMGDFNDSLSMGALDALTLEGEHLHSKDIKAAGLGHLS 273
Query: 48 PDGLLIRFPQ-----------------------EKESTCNVIKRNKSSLDYFVIDRDNKN 84
L F Q E + + S LDY ++ +
Sbjct: 274 DAARLAVFAQYRLQDAYELFVAANMPDNLVHSREHRAATHYYGPKGSVLDYILLSNEFDA 333
Query: 85 FLIDNSFSIVSYDQSD------LDTRRSKLSTHCPLTIEYDFEK 122
+ +V Y D R + + H P+ +E +
Sbjct: 334 SDSRSLAQVVDYQTCDRHLVRPEYERDAYSTDHAPVWVELALRR 377
>gi|114046513|ref|YP_737063.1| endonuclease/exonuclease/phosphatase [Shewanella sp. MR-7]
gi|113887955|gb|ABI42006.1| Endonuclease/exonuclease/phosphatase [Shewanella sp. MR-7]
Length = 377
Score = 38.7 bits (88), Expect = 0.26, Method: Composition-based stats.
Identities = 20/164 (12%), Positives = 42/164 (25%), Gaps = 44/164 (26%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNR---------------KINSIGDTDDFWQKMD 47
++ ++ P ++ GDFN ++S +
Sbjct: 214 AEAALLFHAILARRQSAKHPVILMGDFNDSLSLGALDALTLQGEALHSNDIKAAGLGHLS 273
Query: 48 PDGLLIRF-----------------------PQEKESTCNVIKRNKSSLDYFVIDRDNKN 84
L F +E + + S LDY ++ +
Sbjct: 274 DVMLAQVFAHYRLQDAYELFIEANLADNAAHYREHRAPTHYYGPKGSVLDYVLLSNEFDA 333
Query: 85 FLIDNSFSIVSYDQSD------LDTRRSKLSTHCPLTIEYDFEK 122
+ +V Y D R + + H P+ +E +
Sbjct: 334 SDSRSLAQVVDYQTCDRHLVRPEYERDAYSTDHAPVMVELALRR 377
>gi|300113926|ref|YP_003760501.1| endonuclease/exonuclease/phosphatase [Nitrosococcus watsonii C-113]
gi|299539863|gb|ADJ28180.1| Endonuclease/exonuclease/phosphatase [Nitrosococcus watsonii C-113]
Length = 355
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 14/110 (12%), Positives = 28/110 (25%), Gaps = 16/110 (14%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ + P ++AGD N L+ + N
Sbjct: 230 KEVKNSTQPVIVAGDLNDVA-----WSYTTTLFQKTSGLLDPRIGRGMF------NSYHA 278
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ +I + F +V + + S H P+ I+
Sbjct: 279 KHPLIRWPLDHLFHSEDFLLV-----RVIRMPAFGSDHFPIYIKLSLNSN 323
>gi|282904664|ref|ZP_06312539.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus C160]
gi|282909332|ref|ZP_06317148.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|283958776|ref|ZP_06376222.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus A017934/97]
gi|282326900|gb|EFB57197.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282594913|gb|EFB99889.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus C160]
gi|283789816|gb|EFC28638.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus A017934/97]
Length = 274
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 143 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTEEFKDMLKNLNVNDVLYAGHNSTW 202
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 203 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 262
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 263 FSDHYPIKA 271
>gi|83591541|ref|YP_425293.1| endonuclease/exonuclease/phosphatase [Rhodospirillum rubrum ATCC
11170]
gi|83574455|gb|ABC21006.1| Endonuclease/exonuclease/phosphatase [Rhodospirillum rubrum ATCC
11170]
Length = 264
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 18/105 (17%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
P ++ GDFN W + GL F +
Sbjct: 177 RDAHHPLILMGDFNEW--------LPWGQTAVAGLKTWFDADCSRRTFPSW--------- 219
Query: 77 VIDRDNKNFLIDNSFSIV-SYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ L+ S + + + S H PL ++ +F
Sbjct: 220 LPILRLDRLLVRPSPRRLTPWPTLPQGQGIRRASDHLPLVVDLEF 264
>gi|88856774|ref|ZP_01131428.1| hypothetical protein A20C1_13206 [marine actinobacterium PHSC20C1]
gi|88813942|gb|EAR23810.1| hypothetical protein A20C1_13206 [marine actinobacterium PHSC20C1]
Length = 337
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 12/110 (10%), Positives = 32/110 (29%), Gaps = 10/110 (9%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKIN-SIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+W ++ ++ ++AGDFN I+ TD +
Sbjct: 234 EWLAEQCRS-TNVIMAGDFNSTIDHYASLTDGSEYALGSCRDAASVSDNAAVGTWPT--- 289
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ + + + +++ ++ S H P+
Sbjct: 290 ---QLPSLLGAPIDHVMASSEWTVTGMRVI--ESHDGFGSDHRPILATLS 334
>gi|86131717|ref|ZP_01050314.1| endonuclease/exonuclease/phosphatase family protein [Dokdonia
donghaensis MED134]
gi|85817539|gb|EAQ38713.1| endonuclease/exonuclease/phosphatase family protein [Dokdonia
donghaensis MED134]
Length = 343
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 17/117 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q +KK+ + + ++AGDFN S + D + +
Sbjct: 239 FEKQEGQVKKFLQSEAASPHKVIVAGDFNNSATSYMYRKV---RGDKVDAFAKAGSGTGA 295
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
T +I L D ++ ++ LS H P +
Sbjct: 296 TFWFD----------IIPLRIDFILADEQLEVLDFET----YGDIDLSDHKPSMATF 338
>gi|145226094|ref|YP_001136748.1| endonuclease/exonuclease/phosphatase [Mycobacterium gilvum PYR-GCK]
gi|145218557|gb|ABP47960.1| Endonuclease/exonuclease/phosphatase [Mycobacterium gilvum PYR-GCK]
Length = 399
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 33/135 (24%), Gaps = 18/135 (13%)
Query: 3 SQQGEWLKKWADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q E + + Q ++ G + GD N G + Q + GL +
Sbjct: 264 RRQAEGIAEIYTQLVRDGFDQVAVLGDLNDSPTLDGKPESSLQPLFDTGLKDISEHDGFD 323
Query: 62 TC------NVIKRNKSSLDYFVIDRDNK-----------NFLIDNSFSIVSYDQSDLDTR 104
S +DY ++ L
Sbjct: 324 PGERLGTFGTGHTLASKIDYILLSPALSERVVAGGIIRSGMWRGPRVRKPWKMYDTLTAE 383
Query: 105 RSKLSTHCPLTIEYD 119
+ S H + + +
Sbjct: 384 QHAASDHALIWADLE 398
>gi|116200255|ref|XP_001225939.1| hypothetical protein CHGG_08283 [Chaetomium globosum CBS 148.51]
gi|88179562|gb|EAQ87030.1| hypothetical protein CHGG_08283 [Chaetomium globosum CBS 148.51]
Length = 1559
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 29/112 (25%), Gaps = 19/112 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ-------KMDPDGLLIRFPQEKESTCNV 65
+ + P V+AGDFN K D F + + L +
Sbjct: 551 LQGRPRPSHPVVLAGDFNLK---NPLWDGFGRYDRKSEDLLQLGSLWDLTIRTPRGAT-- 605
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+F + V Y + + S H P +E
Sbjct: 606 --TRAPQGRQRGRPSTIDHFWTSENLQTVYYGE--ECRGK---SDHYPQVLE 650
>gi|114332258|ref|YP_748480.1| endonuclease/exonuclease/phosphatase [Nitrosomonas eutropha C91]
gi|114309272|gb|ABI60515.1| Endonuclease/exonuclease/phosphatase [Nitrosomonas eutropha C91]
Length = 253
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 14/115 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E +++ Q + P V+AGDFN +++ +
Sbjct: 150 RQLEAIERRIRQLVPPDAPLVLAGDFNDWRGVA--NQALASRLNLVEVFQ---------- 197
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S + I + + S++S H L+ +
Sbjct: 198 YTQGKAARSFPSVLPLLRLDRIYIRGFQVKNARIFHNRPW--SRISDHAALSAQI 250
>gi|254504315|ref|ZP_05116466.1| endonuclease/exonuclease/phosphatase family [Labrenzia alexandrii
DFL-11]
gi|222440386|gb|EEE47065.1| endonuclease/exonuclease/phosphatase family [Labrenzia alexandrii
DFL-11]
Length = 237
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 30/121 (24%), Gaps = 20/121 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L + + +P ++ GD N + ++ + FP
Sbjct: 133 KKQISSLMHQLHEGLD-YLPTILIGDLNEWRDDAKSIRLLEKRYEVTTPGRSFPSPLPVG 191
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ F++ T R S H P+ E E
Sbjct: 192 S------------------LDRIITSPEFTVQKAGVHKSKTARI-ASDHLPVWAELALEP 232
Query: 123 G 123
Sbjct: 233 A 233
>gi|188534764|ref|YP_001908561.1| hypothetical protein ETA_26410 [Erwinia tasmaniensis Et1/99]
gi|226701646|sp|B2VIE6|Y2641_ERWT9 RecName: Full=UPF0294 protein ETA_26410
gi|188029806|emb|CAO97687.1| Endonuclease/exonuclease/phosphatase family protein [Erwinia
tasmaniensis Et1/99]
Length = 268
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q I P +IAGDFN Q+++ R +E R K+
Sbjct: 176 EQIIHHKGPVIIAGDFNA---------WSRQRINALYRFAREMGLREVRFTDDHRRKAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+D
Sbjct: 227 RPLDFIFYRGMGVAEASVLVT------------RASDHNPLLVEFD 260
>gi|91217808|ref|ZP_01254763.1| hypothetical protein P700755_06530 [Psychroflexus torquis ATCC
700755]
gi|91184009|gb|EAS70397.1| hypothetical protein P700755_06530 [Psychroflexus torquis ATCC
700755]
Length = 271
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 14/125 (11%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDF----WQKMDPDGLLIRFP 56
S+Q E K+ ++ F+ GDFN S + + +
Sbjct: 155 SKQPEQELKYLKLYPELYPDENFIFLGDFN-LPESHSVFNPLKSKGFISALVNQKTSLKM 213
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ K C + + +D F I + + Y+ +S H P+ +
Sbjct: 214 KCKAGICLASEYDNIFIDSK-------AFKILKTGVDLFYETFTDLKSARMISDHIPIWV 266
Query: 117 EYDFE 121
E+DF
Sbjct: 267 EFDFN 271
>gi|293365069|ref|ZP_06611786.1| endonuclease/exonuclease/phosphatase family protein RgfB
[Streptococcus oralis ATCC 35037]
gi|307702222|ref|ZP_07639182.1| endonuclease/Exonuclease/phosphatase family protein [Streptococcus
oralis ATCC 35037]
gi|291316519|gb|EFE56955.1| endonuclease/exonuclease/phosphatase family protein RgfB
[Streptococcus oralis ATCC 35037]
gi|307624235|gb|EFO03212.1| endonuclease/Exonuclease/phosphatase family protein [Streptococcus
oralis ATCC 35037]
Length = 271
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 24/106 (22%), Gaps = 2/106 (1%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ P ++AGDFN G+ + + S +
Sbjct: 168 LKELNKPLILAGDFNNPAGQEGNQAILASPLGLQDAFEVAK--ERSGSYTVPPEIDGWKG 225
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ S ++S H L ++
Sbjct: 226 NTEPLRIDYVFTTKELEVESLQVVFDGQNSPQVSDHYGLNAVLTWK 271
>gi|282880174|ref|ZP_06288894.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
timonensis CRIS 5C-B1]
gi|281306047|gb|EFA98087.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
timonensis CRIS 5C-B1]
Length = 267
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 34/119 (28%), Gaps = 24/119 (20%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + + D+ + +P ++ GD N+ + S L + ++
Sbjct: 172 EQAKVITS--DEITSSTLPTILTGDMNQGVGSSVIN---------QYLTRYERMDNDNGT 220
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV-SYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + S + + +LS HCP+ +
Sbjct: 221 Y------------MGMSKIDFIFGSKGQWNLQSCKVLERFLNQKELSDHCPVLSILQLK 267
>gi|18147095|dbj|BAB82523.1| deoxyribonuclease I [Gloydius halys]
Length = 282
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 10/95 (10%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN + D ++ + + V + + +
Sbjct: 184 LLLGDFNAGCKYVRVEDWPSIRLRSIKDFQWLIPDT-ADTTVTNTVCAYDRIVAVGSKLR 242
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTI 116
++ + + ++ ++ + + L S H P+ +
Sbjct: 243 ESILPATAKVDNFQKTLKLSSKDALAVSDHFPVEV 277
>gi|119773257|ref|YP_925997.1| phospholipase C [Shewanella amazonensis SB2B]
gi|119765757|gb|ABL98327.1| Phospholipase C [Shewanella amazonensis SB2B]
Length = 334
Score = 38.7 bits (88), Expect = 0.27, Method: Composition-based stats.
Identities = 20/150 (13%), Positives = 45/150 (30%), Gaps = 34/150 (22%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL----------I 53
Q ++ + + ++I +I GD N + + + D ++
Sbjct: 186 QLGEIQAFIEAEQIPANEAVIIGGDMNVEWSKQQEVTDMLATVNAGLNFSTPVTGSFSAR 245
Query: 54 RFPQEKESTCNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--- 108
K + +LDY +D+K + + V Y ++ + L
Sbjct: 246 DNWFTKANAYYFDYSLDYNDTLDYVFWHQDHKQPANNPEMA-VRYPKAQISWYWWYLKGY 304
Query: 109 -----------------STHCPLTIEYDFE 121
S H P+ + ++F
Sbjct: 305 WNLSSGRYYHNGYYNELSDHYPVQVNFEFN 334
>gi|313676514|ref|YP_004054510.1| endonuclease/exonuclease/phosphatase [Marivirga tractuosa DSM 4126]
gi|312943212|gb|ADR22402.1| Endonuclease/exonuclease/phosphatase [Marivirga tractuosa DSM 4126]
Length = 352
Score = 38.7 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 12/110 (10%), Positives = 29/110 (26%), Gaps = 16/110 (14%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ P ++AGD N + L+ + + +
Sbjct: 233 KKTNADQKPTIVAGDLNDVA-----WSYTTELFLKISGLLDPRRGRGFYSSFH------A 281
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + + F + ++ S S H P+ ++ K
Sbjct: 282 KHALARWPLDHIFCSGHFRLQ-----NMKRMESIGSDHFPIYVQLYLAKT 326
>gi|254564561|ref|XP_002489391.1| Class II abasic (AP) endonuclease involved in repair of DNA damage
[Pichia pastoris GS115]
gi|238029187|emb|CAY67107.1| Class II abasic (AP) endonuclease involved in repair of DNA damage
[Pichia pastoris GS115]
gi|328349821|emb|CCA36221.1| AP endonuclease 2 [Pichia pastoris CBS 7435]
Length = 520
Score = 38.7 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 7/68 (10%), Positives = 17/68 (25%), Gaps = 2/68 (2%)
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + + I L + L S HCP+
Sbjct: 290 HHGRVMRSYTVWNTLKNTRPLNIGSRIDLILCSTALLNKFKKCEILPW--LMGSDHCPVI 347
Query: 116 IEYDFEKG 123
+++ ++
Sbjct: 348 ADFEPDES 355
>gi|120436263|ref|YP_861949.1| hypothetical protein GFO_1917 [Gramella forsetii KT0803]
gi|117578413|emb|CAL66882.1| conserved hypothetical protein, membrane [Gramella forsetii KT0803]
Length = 331
Score = 38.7 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 16/109 (14%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
K +P ++AGDFN + + + +G L +
Sbjct: 239 KSVSKNQMPSIVAGDFNDVS-----WSNTSRLFENNGKLNNVRLGRGLYNTFD------A 287
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ ++ ++ + F ++ D+ S H P+ ++ ++
Sbjct: 288 NSSIMKWPLDHYYVTKEFKLI-----DIRLLDKIGSDHFPIYAKFLLDE 331
>gi|130078|sp|P09599|PHL1_BACCE RecName: Full=Sphingomyelinase C; Short=SMase; AltName:
Full=Cereolysin B; AltName: Full=SMPLC; AltName:
Full=Sphingomyelin phosphodiesterase; Flags: Precursor
gi|580755|emb|CAA45503.1| sphingomyelin phosphodiesterase [Bacillus cereus]
gi|580761|emb|CAA31333.1| SMase [Bacillus cereus]
Length = 333
Score = 38.7 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 198 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 317
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 DDY-SDHYPVAATISMK 333
>gi|310286996|ref|YP_003938254.1| Conserved hypothetical membrane spanning protein with
endonuclease/exonuclease/phosphatase family domain
[Bifidobacterium bifidum S17]
gi|309250932|gb|ADO52680.1| Conserved hypothetical membrane spanning protein with
endonuclease/exonuclease/phosphatase family domain
[Bifidobacterium bifidum S17]
Length = 309
Score = 38.7 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 25/110 (22%), Gaps = 13/110 (11%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L + A + + G +V GDFN + + + + +
Sbjct: 210 LDELASMRSREGSRYVFMGDFNATTDHTPFRNILGNRFSDAAR---QSGHGFTFTWPSNK 266
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ +I + S S H L
Sbjct: 267 LPLPRFAGIDHIVLDKDIIAGQMQVKSVA----------SSDHAALLATI 306
>gi|240172210|ref|ZP_04750869.1| hypothetical protein MkanA1_23044 [Mycobacterium kansasii ATCC
12478]
Length = 396
Score = 38.7 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 4/121 (3%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
L + Q G ++ GDFN + + + Q ++
Sbjct: 275 QLTNYIQQN-SGGHAVIVTGDFNALYSDDQSALLQFAANNLLTDAWVQVQGGPTSPPFAP 333
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD---LDTRRSKLSTHCPLTIEYDFEKGN 124
K + ++D+ + + Y ++ LS H P + + + N
Sbjct: 334 TCKVGNECELLDKIFYRSGQGVTLTATGYSNEAPKFFNSNGQPLSDHSPPMVTFQYTADN 393
Query: 125 V 125
V
Sbjct: 394 V 394
>gi|147797881|emb|CAN63072.1| hypothetical protein VITISV_025643 [Vitis vinifera]
Length = 740
Score = 38.7 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 15/106 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ + GDFN + + + + D L+ P + +
Sbjct: 600 DDPWCLGGDFNITLFQPERSSQRRISSAMRRFAETVDDLELVDLPFQGGEFTW------N 653
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ FL+ S+ S +S H P+ +E
Sbjct: 654 GGLNNQVWARLDRFLVSPSWLDQFSGVS-QSRLSRPISDHFPIVLE 698
>gi|147778443|emb|CAN63032.1| hypothetical protein VITISV_024672 [Vitis vinifera]
Length = 1413
Score = 38.7 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 6/109 (5%)
Query: 16 KIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN---K 70
+P+ + GDFN + + + V +
Sbjct: 466 HAAHSLPWCVIGDFNELMHQSEKCGNHPHPGSLIEAFRQVVTNCGLSDLGYVGYAYTWER 525
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ L+ + + + QS L S H P+ +E
Sbjct: 526 GRGTTRWVEERLDRALVSADWKHL-FHQSRLIHLFVSTSDHLPVLLELR 573
>gi|169850286|ref|XP_001831840.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Coprinopsis cinerea
okayama7#130]
gi|116507128|gb|EAU90023.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Coprinopsis cinerea
okayama7#130]
Length = 609
Score = 38.7 bits (88), Expect = 0.28, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 31/146 (21%), Gaps = 36/146 (24%)
Query: 7 EWLKKWADQKIKTGIP-FVIAGDFNRKINSIGD-----------------TDDFWQKMDP 48
L+ I+ ++ GD N I + FW K
Sbjct: 178 RLLETRVRGLIEKEKREVIVVGDLNACAAVIDHCEGELMIKKGQAMGLEGEEGFWGKEYR 237
Query: 49 DGLLIRFPQEKESTC---------NVI-------KRNKSSLDYFVIDRDNKNFLIDNSFS 92
+ +E + K S L+
Sbjct: 238 RWIRDWLVKEDGTGGTLVDITRKLWPDREGMYTCWNTKISARETNYGTRIDFILVTPGLV 297
Query: 93 IVSYDQSDLDTRRSKLSTHCPLTIEY 118
L K S HCP+ ++
Sbjct: 298 PWIKASDTLP--NIKGSDHCPVYADF 321
>gi|310779140|ref|YP_003967473.1| Endonuclease/exonuclease/phosphatase [Ilyobacter polytropus DSM
2926]
gi|309748463|gb|ADO83125.1| Endonuclease/exonuclease/phosphatase [Ilyobacter polytropus DSM
2926]
Length = 281
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 5/108 (4%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ + +I GDFN D F + + + T K +
Sbjct: 173 YFQDIDENEQDILIGGDFNL----PAYDDSFRRLFSHEDQIFYGIDPVNKTTIGKKGLSN 228
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
S D NS ++ + Q + R +S H P+ IE D
Sbjct: 229 SYDNIFYSYRYTKEFTGNS-GVIDFTQGNYSEVRKSISDHLPVFIEVD 275
>gi|298376526|ref|ZP_06986481.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
gi|298266404|gb|EFI08062.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
Length = 272
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 21/157 (13%), Positives = 43/157 (27%), Gaps = 39/157 (24%)
Query: 2 LSQQGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGD--------------------- 38
LS++ E L+++ + + GDFN G
Sbjct: 117 LSEKAESLRRFIEDIESKLGHQRTICCGDFNMNPFDKGIIKAQGLHAVMEKNIANKKECI 176
Query: 39 ---------TDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLID 88
+ W + G S ++ + +F
Sbjct: 177 IESEKFSFFYNPMWGFLGDLGRGDVSGTMYYNSGGHINYYWHLYDQVLIRPDMINSFDES 236
Query: 89 NSFSIVSYDQSDLDTR----RSKLSTHCPLTIEYDFE 121
+ + S ++ DL T LS H P+ +++ +
Sbjct: 237 DLKIVTSANKLDLLTSNNLVDKSLSDHLPI--KFNLK 271
>gi|239996509|ref|ZP_04717033.1| Endonuclease/exonuclease/phosphatase [Alteromonas macleodii ATCC
27126]
Length = 327
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 34/107 (31%), Gaps = 16/107 (14%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
++ +T P V+AGD N +K L+ + + N
Sbjct: 232 EEIAETEGPIVVAGDLNDVA-----WSPTTRKFKKISGLLDPREGRGFF------NTFHA 280
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
Y ++ + F++V+ + S S H PL E
Sbjct: 281 KYPLVKWPLDHVFHSEHFALVNIE-----KLESIGSDHYPLYTELAL 322
>gi|257126278|ref|YP_003164392.1| endonuclease/exonuclease/phosphatase [Leptotrichia buccalis
C-1013-b]
gi|257050217|gb|ACV39401.1| Endonuclease/exonuclease/phosphatase [Leptotrichia buccalis
C-1013-b]
Length = 263
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 12/99 (12%), Positives = 30/99 (30%), Gaps = 6/99 (6%)
Query: 24 VIAGDFNRKI--NSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
++ GDFN N + Q + EK+ + ++ D +
Sbjct: 169 ILMGDFNTDAIGNVAAYENILSQGLFDT----YVMAEKKDDGITVDKSIHGWDNDKAKKR 224
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + +S H + ++ +F
Sbjct: 225 LDYIFSNKELKVKESKVIFNNKNKEIVSDHFGIEVKIEF 263
>gi|163748920|ref|ZP_02156171.1| hypothetical protein KT99_12479 [Shewanella benthica KT99]
gi|161331296|gb|EDQ02184.1| hypothetical protein KT99_12479 [Shewanella benthica KT99]
Length = 283
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 24/118 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
S+Q E L + K P ++AGDFN Q+++ + E
Sbjct: 189 SRQFEALA---LELEKHQGPIILAGDFNT---------WRAQRLNLVSEFAKRFNLSEI- 235
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + V + + ++ ++ S H P+T +
Sbjct: 236 -----RYRVDERQRVFGLPLDHLYYRGLIFL------GAESLATESSDHNPITANFRL 282
>gi|42779823|ref|NP_977070.1| sphingomyelinase C [Bacillus cereus ATCC 10987]
gi|42735740|gb|AAS39678.1| sphingomyelinase C [Bacillus cereus ATCC 10987]
Length = 378
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 243 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 302
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 303 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 362
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 363 DDY-SDHYPVAATISMK 378
>gi|303236932|ref|ZP_07323510.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
disiens FB035-09AN]
gi|302482861|gb|EFL45878.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
disiens FB035-09AN]
Length = 324
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 15/118 (12%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ +I GDFN ++ + M ++ K +SLD
Sbjct: 208 QEKQANILIMGDFNDYYDNASLRKIYEHGMVNISKNAIGKHGAKA-TYRYKGEWNSLDQM 266
Query: 77 VIDRDNKNFLIDNSFSIVSYDQS-DLDTRRSKL-------------STHCPLTIEYDF 120
+I + + S + + D K S H PL ++
Sbjct: 267 LISQHLLPKVKQCSINDAPFLIEEDNKYGGVKPRRFYNGMRYNGGFSDHLPLVLDLSL 324
>gi|257426156|ref|ZP_05602572.1| beta-hemplysin [Staphylococcus aureus subsp. aureus 55/2053]
gi|257428816|ref|ZP_05605211.1| beta-hemplysin [Staphylococcus aureus subsp. aureus 65-1322]
gi|257431427|ref|ZP_05607801.1| beta-hemplysin [Staphylococcus aureus subsp. aureus 68-397]
gi|257434138|ref|ZP_05610489.1| beta-hemplysin [Staphylococcus aureus subsp. aureus E1410]
gi|257437049|ref|ZP_05613090.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus M876]
gi|282914863|ref|ZP_06322644.1| phospholipase C [Staphylococcus aureus subsp. aureus M899]
gi|282919849|ref|ZP_06327581.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus C427]
gi|282925360|ref|ZP_06333016.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus C101]
gi|293507877|ref|ZP_06667719.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510849|ref|ZP_06669549.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus M809]
gi|293545449|ref|ZP_06672125.1| phospholipase C [Staphylococcus aureus subsp. aureus M1015]
gi|257271064|gb|EEV03233.1| beta-hemplysin [Staphylococcus aureus subsp. aureus 55/2053]
gi|257274460|gb|EEV05972.1| beta-hemplysin [Staphylococcus aureus subsp. aureus 65-1322]
gi|257277873|gb|EEV08537.1| beta-hemplysin [Staphylococcus aureus subsp. aureus 68-397]
gi|257281064|gb|EEV11208.1| beta-hemplysin [Staphylococcus aureus subsp. aureus E1410]
gi|257283643|gb|EEV13769.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus M876]
gi|282312994|gb|EFB43394.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus C101]
gi|282316487|gb|EFB46864.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus C427]
gi|282321257|gb|EFB51587.1| phospholipase C [Staphylococcus aureus subsp. aureus M899]
gi|290919760|gb|EFD96832.1| phospholipase C [Staphylococcus aureus subsp. aureus M1015]
gi|291094940|gb|EFE25208.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466321|gb|EFF08847.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus M809]
Length = 274
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 143 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTEEFKDMLKNLNVNDVLYAGHNSTW 202
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 203 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 262
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 263 FSDHYPIKA 271
>gi|318062079|ref|ZP_07980800.1| endonuclease/exonuclease/phosphatase [Streptomyces sp. SA3_actG]
gi|318077408|ref|ZP_07984740.1| endonuclease/exonuclease/phosphatase [Streptomyces sp. SA3_actF]
Length = 326
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 14/124 (11%), Positives = 28/124 (22%), Gaps = 18/124 (14%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + ++ + + V+ GDFNR M P +
Sbjct: 203 QIQAVRAFVAEFGSAHGTARTVLGGDFNRAAAD--------ATMKPLTSAYENCVSGATH 254
Query: 63 CNVIKRNKSSLDYFVID--------RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
K+ + S + + + + S H P+
Sbjct: 255 HGWDNAAKAHRRNEFDHLFVTRPAEGSAFSSCSVESALMDTTENEADSGDPNGFSDHAPV 314
Query: 115 TIEY 118
Sbjct: 315 VGRL 318
>gi|319788284|ref|YP_004147759.1| endonuclease/exonuclease/phosphatase [Pseudoxanthomonas suwonensis
11-1]
gi|317466796|gb|ADV28528.1| Endonuclease/exonuclease/phosphatase [Pseudoxanthomonas suwonensis
11-1]
Length = 261
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 15/117 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L +++ P V+AGDFN +++ GL+ F Q++
Sbjct: 156 RSQVGLLGALLREQVPADAPVVVAGDFNDW------RGAAHRQLLDCGLVEAFEQQRGRL 209
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L I + ++LS H PL
Sbjct: 210 ARSFPALLPLLPLDRIYVRGLQVHEVATPRG---------RPWTRLSDHLPLHARLS 257
>gi|171676121|ref|XP_001903014.1| hypothetical protein [Podospora anserina S mat+]
gi|170936126|emb|CAP60786.1| unnamed protein product [Podospora anserina S mat+]
Length = 645
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 9/80 (11%), Positives = 15/80 (18%), Gaps = 5/80 (6%)
Query: 39 TDDFWQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
D+ ++ L F + R L +
Sbjct: 245 RDEGREEAVLWDLCREFHPTRTGMYTCWDTRKNC--RPGNFGSRIDYVLCSSGIKDW--F 300
Query: 98 QSDLDTRRSKLSTHCPLTIE 117
S HCP+
Sbjct: 301 IDANIQEGLLGSDHCPVYAT 320
>gi|170102771|ref|XP_001882601.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642498|gb|EDR06754.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 650
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 11/73 (15%), Positives = 21/73 (28%), Gaps = 4/73 (5%)
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ + E++ K S LI K S
Sbjct: 253 DIVRKLWPERKGM-YTCWNTKISARDSNYGTRIDYILITRGLLPWVKAADIQPL--IKGS 309
Query: 110 THCPLTIEYDFEK 122
HCP+ ++ F++
Sbjct: 310 DHCPVYVDL-FDE 321
>gi|147826870|emb|CAN71106.1| hypothetical protein VITISV_000041 [Vitis vinifera]
Length = 2009
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 15/106 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ I GDFN ++ + + ++ D LI P + RN
Sbjct: 1055 DEPWCIGGDFNVTLSQRDRSRQGSXSGAMRRFAQVVDDLALIDLPLQGGVYSWSGGRNNQ 1114
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ + + + + S H P+ ++
Sbjct: 1115 ------XWARLDRFLVSQGWLDI-FRGAVQCRLPRPTSDHFPILLK 1153
>gi|116317784|emb|CAH65761.1| H0215A08.3 [Oryza sativa Indica Group]
Length = 1186
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 17/120 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------FWQKMDPDGLLIRFPQE 58
+L++ D + P+V+AGDFN + +++ D L
Sbjct: 124 RFLQELRDIRNARSGPWVVAGDFNLIYQDQDKNNANLNRRMMGRYRRAINDLSLHELHLN 183
Query: 59 KESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
S N + I + + L S +S HCPL +
Sbjct: 184 GRSFTWSNGWTNPTLERLDRIFYTSDWEDMFPQCF--------LMALPSTVSDHCPLLLS 235
>gi|3785984|gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1449
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 17/126 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-----------WQKMDPDGLLIRFPQ 57
L+ D I P++I GDFN ++ + +Q +
Sbjct: 538 LRDHMDSPIIRDKPWIIFGDFNEILDMDEHSRMEDHPAVTSGMRDFQSLVNYCSFSDLAS 597
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
KR D I + +++ ++ +V Y QS S H I
Sbjct: 598 HGPLFTWCNKR-----DNDPIWKKLDRVMVNEAWKMV-YPQSYNVFEAGGCSDHLRCRIN 651
Query: 118 YDFEKG 123
+ G
Sbjct: 652 LNMNSG 657
>gi|325687143|gb|EGD29166.1| RgfB protein [Streptococcus sanguinis SK72]
Length = 271
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K + +K P V+ GDFN + G + +
Sbjct: 159 QGEW-AKLEAELLKVKTPLVLMGDFNNPVGQQGYQTILASPLKLQDSHAVAREAIGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + +S H L ++
Sbjct: 218 --EGTIAGWDDNKHALKIDYVFTSQGMDVERSAVVFDGKETPVVSDHFGLEVQVAL 271
>gi|223982777|ref|ZP_03633005.1| hypothetical protein HOLDEFILI_00279 [Holdemania filiformis DSM
12042]
gi|223965277|gb|EEF69561.1| hypothetical protein HOLDEFILI_00279 [Holdemania filiformis DSM
12042]
Length = 656
Score = 38.7 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 31/120 (25%), Gaps = 17/120 (14%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +Q + + + +I DFN ++ F
Sbjct: 163 LRRRQIAQVIERVNA--DPVEYKIITADFNTDQHAYEY----------SMFRDNFNLANG 210
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ D + N L + +D+ S+LS H E++
Sbjct: 211 YNGMWYDTYREGDDPSMQVLTIDNVLCTKNMR-----ITDIQRVESELSDHDLFYAEFEL 265
>gi|311063871|ref|YP_003970596.1| hypothetical protein BBPR_0452 [Bifidobacterium bifidum PRL2010]
gi|310866190|gb|ADP35559.1| Conserved hypothetical membrane spanning protein with
Endonuclease/Exonuclease/phosphatase family domain
[Bifidobacterium bifidum PRL2010]
Length = 371
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 24/110 (21%), Gaps = 13/110 (11%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L + A + G +V GDFN + + + + +
Sbjct: 272 LDELASMRSHEGSRYVFMGDFNATTDHTPFRNILGNRFSDAAR---QSGHGFTFTWPSNK 328
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ +I + S S H L
Sbjct: 329 LPLPRFAGIDHIVLDKDIIAGQMQVKSVA----------GSDHAALLATI 368
>gi|239931999|ref|ZP_04688952.1| large secreted protein [Streptomyces ghanaensis ATCC 14672]
gi|291440368|ref|ZP_06579758.1| large secreted protein [Streptomyces ghanaensis ATCC 14672]
gi|291343263|gb|EFE70219.1| large secreted protein [Streptomyces ghanaensis ATCC 14672]
Length = 609
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 9/117 (7%)
Query: 5 QGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + + + + V GD N S + + I+ E
Sbjct: 499 QAKAVHDFTAKILTTQKNAAVVALGDINDFEFSRT--TEILEGDGTLWSAIKSLPPGERY 556
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
V + N LD +I + + ++S H P + +
Sbjct: 557 SYVYQGNSQVLDQILISPSIRRGGTFSYD-----SVHLNAEFHDQISDHDPQVLRFR 608
>gi|255601665|ref|XP_002537723.1| conserved hypothetical protein [Ricinus communis]
gi|223515316|gb|EEF24660.1| conserved hypothetical protein [Ricinus communis]
Length = 287
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 27/112 (24%), Gaps = 11/112 (9%)
Query: 13 ADQKIKTGIPF--VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
TG P V+ GDFN +S + ++ I
Sbjct: 180 IGPFADTGRPVSAVVCGDFNSAYDSEAYRR-MLEPLEGSPSFIDAWPTLHPGQTPPMTAG 238
Query: 71 SSLDYFVIDRDNKNFLID----NSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
D + + + ++ S H P+ +E
Sbjct: 239 VFDKVQWADGPLTCDFVFVTEDLRMRLRRCEVD----GATRASDHQPILVEL 286
>gi|325180657|emb|CCA15062.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 515
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 12/113 (10%), Positives = 27/113 (23%), Gaps = 14/113 (12%)
Query: 6 GEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ + + ++ V+ GD N K +S Q + + + F + S
Sbjct: 201 AKLIVQRLGSLCQQSDKAVVLLGDMNAKSSSPAVQYLLTQDLKDESVDPTFCGDLVSKTC 260
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
D + + S H + +
Sbjct: 261 SD------------KFDFILHRLPAGVCAIESSVIRQQFNECYPSDHA-VLVT 300
>gi|27466926|ref|NP_763563.1| truncated beta-hemplysin [Staphylococcus epidermidis ATCC 12228]
gi|57865922|ref|YP_190085.1| beta-hemolysin [Staphylococcus epidermidis RP62A]
gi|27314468|gb|AAO03605.1|AE016744_8 truncated beta-hemplysin [Staphylococcus epidermidis ATCC 12228]
gi|57636580|gb|AAW53368.1| beta-hemolysin [Staphylococcus epidermidis RP62A]
Length = 334
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 29/129 (22%), Gaps = 14/129 (10%)
Query: 1 MLSQQGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK---MDPDGLLIRFP 56
+ Q +K++ D+ I P I GD N +S + +
Sbjct: 200 IRQSQMSEIKQFIKDKNIPKNEPVYIGGDLNVIKDSDEYQQMANNLNVSLPTQFDGNAYS 259
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------- 108
+ S + S + K
Sbjct: 260 WDTSSNSIAKYNYPKLEPQHLDYILLDRDHAQPSSWHNDTHRVKSPEWSVKSWGKTYKYN 319
Query: 109 --STHCPLT 115
S H PL+
Sbjct: 320 DYSDHYPLS 328
>gi|260061623|ref|YP_003194703.1| Endonuclease/exonuclease/phosphatase [Robiginitalea biformata
HTCC2501]
gi|88785755|gb|EAR16924.1| Endonuclease/exonuclease/phosphatase [Robiginitalea biformata
HTCC2501]
Length = 370
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 26/104 (25%), Gaps = 16/104 (15%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
++ P ++ GDFN + K ++ +
Sbjct: 235 RQSDYPAIVLGDFNDV-------AWSESTGLFQRVGRLLDPRKGRGFFNTYHAQNWI--- 284
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + F + + S H P+ I D+
Sbjct: 285 -LRWPLDHIFAHREFRLRDLEVMPDI-----GSDHFPVYIHLDY 322
>gi|322411016|gb|EFY01924.1| hypothetical protein SDD27957_01170 [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
Length = 277
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 26/107 (24%), Gaps = 2/107 (1%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ + P ++ GDFN + +++
Sbjct: 167 KELLSLNCPLILMGDFN-NPTDQDGYQVIMGSPLDLQDSHKIADHIFGDHSIVADIDGWE 225
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
D + F I + + +S H L + D+
Sbjct: 226 DNK-EAFKVDHVFTSKDFEIKASHITFEGGDAPVVSDHYGLEVTLDW 271
>gi|71043966|ref|NP_085139.2| endonuclease/exonuclease/phosphatase family domain-containing
protein 1 [Homo sapiens]
gi|296434489|sp|Q7L9B9|EEPD1_HUMAN RecName: Full=Endonuclease/exonuclease/phosphatase family
domain-containing protein 1
Length = 569
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 14/113 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ +K +I GDF + +S + + + P +
Sbjct: 433 LQETLKGEKDVIILGDFGQGPDSNDYDILRKEKFHHLIPAHTFTNISTKNPQGSKS---- 488
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEY 118
LD I + K + + + D + S HCP+ E+
Sbjct: 489 ---LDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEF 538
>gi|12697957|dbj|BAB21797.1| KIAA1706 protein [Homo sapiens]
Length = 573
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 14/113 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ +K +I GDF + +S + + + P +
Sbjct: 437 LQETLKGEKDVIILGDFGQGPDSNDYDILRKEKFHHLIPAHTFTNISTKNPQGSKS---- 492
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEY 118
LD I + K + + + D + S HCP+ E+
Sbjct: 493 ---LDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEF 542
>gi|86134605|ref|ZP_01053187.1| endonuclease/exonuclease/phosphatase family protein [Polaribacter
sp. MED152]
gi|85821468|gb|EAQ42615.1| endonuclease/exonuclease/phosphatase family protein [Polaribacter
sp. MED152]
Length = 325
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 28/119 (23%), Gaps = 26/119 (21%)
Query: 20 GIPFVIAGDFNRKINS---------IGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
G +I GDFN S + + ++P + +
Sbjct: 205 GPKIIIMGDFNDDPKSKSVKEYLVKDDFYNPMEKILNPTSKGSLTY----NGSWNLFDQI 260
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIV-------------SYDQSDLDTRRSKLSTHCPLTI 116
F+++ +K + + + S H P+
Sbjct: 261 IFSKNFLVEEKDKLYFKHAEVFNKKWMKIYKGKYKGSPFRTYIGPWYKGGFSDHFPVYA 319
>gi|66819989|ref|XP_643650.1| hypothetical protein DDB_G0275943 [Dictyostelium discoideum AX4]
gi|60471766|gb|EAL69722.1| hypothetical protein DDB_G0275943 [Dictyostelium discoideum AX4]
Length = 874
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN + +K+ + E R+ LD
Sbjct: 86 IIAGDFNNNHDCNSFFGTELRKIIDQDM--LLDTGIEENTPTFPRSMKRLDRIYCHPTLL 143
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N +++ S H P+TI
Sbjct: 144 NQNSKLVVHNTVFNK----------SDHFPITITIQ 169
>gi|14042026|dbj|BAB55076.1| unnamed protein product [Homo sapiens]
gi|41388939|gb|AAH65518.1| EEPD1 protein [Homo sapiens]
gi|51094729|gb|EAL23976.1| KIAA1706 protein [Homo sapiens]
gi|119614469|gb|EAW94063.1| KIAA1706 protein [Homo sapiens]
gi|168270656|dbj|BAG10121.1| KIAA1706 protein [synthetic construct]
Length = 569
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 14/113 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ +K +I GDF + +S + + + P +
Sbjct: 433 LQETLKGEKDVIILGDFGQGPDSNDYDILRKEKFHHLIPAHTFTNISTKNPQGSKS---- 488
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEY 118
LD I + K + + + D + S HCP+ E+
Sbjct: 489 ---LDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEF 538
>gi|313498769|gb|ADR60135.1| Endonuclease/exonuclease/phosphatase [Pseudomonas putida BIRD-1]
Length = 257
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 21/118 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + + P +IAGDFN + + L F S
Sbjct: 161 QRQVKLMLDLLAS-LPPNAPVIIAGDFND-------WRLKADAVLSEHLTEVFGTPARSF 212
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + N+ + S S LS H PL E +
Sbjct: 213 P-----------ARLPLLRLDRIYLRNAVPGAAQVLSKYPW--SHLSDHVPLAAEINL 257
>gi|313887293|ref|ZP_07820984.1| endonuclease/exonuclease/phosphatase family protein [Porphyromonas
asaccharolytica PR426713P-I]
gi|312923212|gb|EFR34030.1| endonuclease/exonuclease/phosphatase family protein [Porphyromonas
asaccharolytica PR426713P-I]
Length = 360
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 27/137 (19%), Gaps = 34/137 (24%)
Query: 16 KIKTGIPFVIAGDFNRKINS------IGDTDDFWQKMDPDGLLIRFPQEK-------EST 62
+ V+ GDFN + + D ++ P
Sbjct: 222 RANPEQSIVVVGDFNATPEDGLTDSWAASYHTYLSQSDSLAMVDLTPPFTDEQLKTMPPG 281
Query: 63 CNVIKRNKSSLDYFVIDRDN---------------------KNFLIDNSFSIVSYDQSDL 101
+ +D + R K +
Sbjct: 282 SYYYRGYWERIDRLFVSRTLLTETRYPHLELETVRIALPPQKYMHESPAPWGRPRRTYGG 341
Query: 102 DTRRSKLSTHCPLTIEY 118
D+ + S H PL
Sbjct: 342 DSYLAGPSDHLPLVATL 358
>gi|254573632|ref|XP_002493925.1| Component of the CCR4-NOT transcriptional complex [Pichia pastoris
GS115]
gi|238033724|emb|CAY71746.1| Component of the CCR4-NOT transcriptional complex [Pichia pastoris
GS115]
Length = 768
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 39/147 (26%), Gaps = 24/147 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L + ++K K T +P +I GDFN K++S F Q I +
Sbjct: 603 LLDELQAVIRKHLSPKDITKVPLLICGDFNSKVHS-AVYQLFSQGTVDKHEDIIGRDYGK 661
Query: 61 S----------------------TCNVIKRNKSSLDYFVIDRD-NKNFLIDNSFSIVSYD 97
NV +DY +
Sbjct: 662 FTEEGFRHPFHLQSSYDSIGELPYTNVSPTFTDVIDYIWYSTPSLSVKGVLGQVDPDYSK 721
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFEKGN 124
S H PL + F+K +
Sbjct: 722 NIIGFPNADFPSDHIPLLSTFMFKKSS 748
>gi|260827819|ref|XP_002608861.1| hypothetical protein BRAFLDRAFT_102054 [Branchiostoma floridae]
gi|229294215|gb|EEN64871.1| hypothetical protein BRAFLDRAFT_102054 [Branchiostoma floridae]
Length = 537
Score = 38.7 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 30/120 (25%), Gaps = 18/120 (15%)
Query: 22 PFVIAGDFNRKINSIGDT---------DDFWQKMDPDGLLIRFPQ-EKESTCNV-----I 66
P V+ GD N + S +++ L+
Sbjct: 413 PAVLMGDLNTEPGSKAIRFLQGVEEIDRVKTEELQDAWLMKYPEPRADRDGTYWRNEIRD 472
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ---SDLDTRRSKLSTHCPLTIEYDFEKG 123
+ +++ + + ++ D + S H L + F +G
Sbjct: 473 SGLTFNALKSHLEKRIDYMFVRLPSDVRLHNISLLDDGKRGYAAASDHVGLMGTFTFSQG 532
>gi|251811372|ref|ZP_04825845.1| Sphingomyelin phosphodiesterase [Staphylococcus epidermidis
BCM-HMP0060]
gi|251805121|gb|EES57778.1| Sphingomyelin phosphodiesterase [Staphylococcus epidermidis
BCM-HMP0060]
Length = 334
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 29/129 (22%), Gaps = 14/129 (10%)
Query: 1 MLSQQGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK---MDPDGLLIRFP 56
+ Q +K++ D+ I P I GD N +S + +
Sbjct: 200 IRQSQMSEIKQFIKDKNIPKNEPVYIGGDLNVIKDSDEYQQMANNLNVSLPTQFDGNAYS 259
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------- 108
+ S + S + K
Sbjct: 260 WDTSSNSIAKYNYPKLEPQHLDYILLDRDHAQPSSWHNDTHRVKSPEWSVKSWGKTYKYN 319
Query: 109 --STHCPLT 115
S H PL+
Sbjct: 320 DYSDHYPLS 328
>gi|71282220|ref|YP_271635.1| endonuclease/exonuclease/phosphatase family protein [Colwellia
psychrerythraea 34H]
gi|71147960|gb|AAZ28433.1| endonuclease/exonuclease/phosphatase family family [Colwellia
psychrerythraea 34H]
Length = 334
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 22/114 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ L WA + +IAGDFN + ++ + F + +
Sbjct: 236 EVNLLNLWATNR----PYTIIAGDFNM-PADENLYQQNFSLLNNVIEVKGFAFNRTKYTS 290
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ L + S+ S + + H P+
Sbjct: 291 W------------HGARIDHILYSDDISLSSVEVVERVKG-----DHRPVMATL 327
>gi|325695113|gb|EGD37015.1| RgfB protein [Streptococcus sanguinis SK150]
Length = 271
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K ++ +K P V+ GDFN + G + +
Sbjct: 159 QGEW-AKLEEELLKVKTPLVLMGDFNNPVGQQGCQTILASPLKLQDSHAVAREAIGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + +S H L ++
Sbjct: 218 --EGTIAGWDDNKHALKIDYVFTSQGIDVERSAVVFDGKEIPVVSDHFGLEVQVAL 271
>gi|15599153|ref|NP_252647.1| hypothetical protein PA3958 [Pseudomonas aeruginosa PAO1]
gi|107103475|ref|ZP_01367393.1| hypothetical protein PaerPA_01004545 [Pseudomonas aeruginosa PACS2]
gi|218889759|ref|YP_002438623.1| putative nuclease or phosphatase [Pseudomonas aeruginosa LESB58]
gi|9950146|gb|AAG07345.1|AE004813_12 hypothetical protein PA3958 [Pseudomonas aeruginosa PAO1]
gi|218769982|emb|CAW25744.1| possible nuclease or phosphatase [Pseudomonas aeruginosa LESB58]
Length = 379
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 32/133 (24%), Gaps = 15/133 (11%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKI--NSIGDTDDFWQKMDPDGLLIRFPQEK 59
L +Q E + D+ P+++ GD N D L
Sbjct: 248 LERQVETTRTLLDELQARRTPWLLGGDLNLLPPGQYPYLLAPLRAPYREDSELAILSGRF 307
Query: 60 ESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + DR S + + DT ++
Sbjct: 308 PMVPSLEEASGVDQVRWYTHFPNDPRVQGPDRTLDYLFHSPSLTRLDARVRRSDT--LQI 365
Query: 109 STHCPLTIEYDFE 121
S H PL +
Sbjct: 366 SNHLPLAARFLLP 378
>gi|291239611|ref|XP_002739716.1| PREDICTED: apurinic/apyrimidinic endonuclease 2-like [Saccoglossus
kowalevskii]
Length = 541
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 10/119 (8%), Positives = 30/119 (25%), Gaps = 10/119 (8%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFN-----RKINSIGDTDDFWQKMDPDGLLIRFPQEKE- 60
+W+ ++ + G + N I+ ++ F +++
Sbjct: 207 QWMDQFLCKLSDMGEIIDKTSEVNHLIGAVGISPEKVSNYSQSTGSFVDTFRHFHPQQQE 266
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + D + ++ S HCP+ +
Sbjct: 267 AFTCWRTTTGARQLNYGTRIDYILASMSLQVELLDSIIMPNVEG----SDHCPVKVTLR 321
>gi|45658468|ref|YP_002554.1| hemolysin [Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
gi|45601711|gb|AAS71191.1| hemolysin [Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
Length = 623
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 37/121 (30%), Gaps = 10/121 (8%)
Query: 5 QGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR--FPQEKES 61
Q + ++ + + I +I GD N S D + + + F + ++
Sbjct: 317 QFDDIRNFIYSKNIPKDETVLIVGDLNVIKESNEYYDMISRLNVNEPRYVGVPFTWDAKT 376
Query: 62 TCNVIKRNKS----SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL---STHCPL 114
++ LDY + + + + + + + S H P+
Sbjct: 377 NEIAAYYYENEEPVYLDYIFVSKSHAQPPVWQNLAYDPVSKQTWTVSGYTSDEFSDHYPI 436
Query: 115 T 115
Sbjct: 437 Y 437
>gi|66800041|ref|XP_628946.1| hypothetical protein DDB_G0293818 [Dictyostelium discoideum AX4]
gi|60462319|gb|EAL60542.1| hypothetical protein DDB_G0293818 [Dictyostelium discoideum AX4]
Length = 1106
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN + +K+ + E R+ LD
Sbjct: 136 IIAGDFNNNHDCNSFFGTELRKIIDQDM--LLDTGIEENTPTFPRSMKRLDRIYCHPTLL 193
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N +++ S H P+TI
Sbjct: 194 NQNSKLVVHNTVFNK----------SDHFPITITIQ 219
>gi|325696374|gb|EGD38265.1| RgfB protein [Streptococcus sanguinis SK160]
Length = 271
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K + +K P V+ GDFN + G + +
Sbjct: 159 QGEW-AKLEAELLKVKTPLVLMGDFNNPVGQQGYQTILASPLKLQDSHAVAREAIGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + +S H L ++
Sbjct: 218 --EGTIAGWDDNKHALKIDYVFTSQGMDVERSAVVFDGKETPVVSDHFGLEVQVAL 271
>gi|312881161|ref|ZP_07740959.1| sphingomyelinase/beta-hemolysin [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309371053|gb|EFP98507.1| sphingomyelinase/beta-hemolysin [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 489
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 31/134 (23%), Gaps = 15/134 (11%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMD---PDGLLIRFP 56
+ Q E ++ + +QK I +I GD N S +
Sbjct: 181 IRKSQFETIRDYINQKDIPNDEMIIILGDLNVMKASPEYRSMLETLNVNEPDSYAGADYS 240
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT----------RRS 106
+ S V + + +
Sbjct: 241 WDPSSNALVHANYPDLKGQLLDYIFVEKDHKQPRYWHNQVWDVVSPRLEIFGTFESYYMY 300
Query: 107 KLSTHCPLTIEYDF 120
+ S H P+ ++F
Sbjct: 301 EYSDHYPVVA-FEF 313
>gi|288928925|ref|ZP_06422771.1| endonuclease/exonuclease/phosphatase family protein [Prevotella sp.
oral taxon 317 str. F0108]
gi|288329909|gb|EFC68494.1| endonuclease/exonuclease/phosphatase family protein [Prevotella sp.
oral taxon 317 str. F0108]
Length = 298
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 13/102 (12%), Positives = 29/102 (28%), Gaps = 5/102 (4%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P AGD N + + + +V + N++ V
Sbjct: 202 ATQPVFFAGDLNDSPSWKPE---LTAFPIITKAFDIITPQT--GTSVDQPNETIDYILVD 256
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + T +S H P+ ++ F
Sbjct: 257 KAHKGAVKVVQTAVVKQLEINGKVTETGTISDHFPVFVDVRF 298
>gi|240140331|ref|YP_002964810.1| hypothetical protein MexAM1_META1p3842 [Methylobacterium extorquens
AM1]
gi|240010307|gb|ACS41533.1| conserved hypothetical protein; putative membrane protein
[Methylobacterium extorquens AM1]
Length = 348
Score = 38.7 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 16/106 (15%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A + KT ++AGD N + L+ Q +
Sbjct: 228 AREVAKTKDSTIVAGDLNDVA-----WSHTNRLFQNISGLLDPRQGRGLFSTFH------ 276
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
Y + + SD+ S H P+ ++
Sbjct: 277 AQYPFARWPLDHIFFSE-----HFLLSDMQRLNDVGSDHFPIWVDL 317
>gi|261219142|ref|ZP_05933423.1| endonuclease/exonuclease/phosphatase [Brucella ceti M13/05/1]
gi|261322204|ref|ZP_05961401.1| endonuclease/exonuclease/phosphatase [Brucella ceti M644/93/1]
gi|260924231|gb|EEX90799.1| endonuclease/exonuclease/phosphatase [Brucella ceti M13/05/1]
gi|261294894|gb|EEX98390.1| endonuclease/exonuclease/phosphatase [Brucella ceti M644/93/1]
Length = 310
Score = 38.7 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 18/158 (11%), Positives = 40/158 (25%), Gaps = 42/158 (26%)
Query: 5 QGEWLKKWADQKIK----TGIPFVIAGDFNRKINSI----GDTD------------DFWQ 44
+ +++ ++K T ++I GDFN I + +
Sbjct: 152 EARAIRRIIEEKFGIDRVTERRWLICGDFNDYRERILIGGDEWNGYEFTPVMEEESALNV 211
Query: 45 KMDPDGLLIRFPQEKESTCNVIK-------RNKSSLDYFVIDRDNKNFLIDNSFSIVSY- 96
+ + + + R+ LDY + I+
Sbjct: 212 LLGDGFAVNLVERRPVMDRWTLYHTRGPLERHLCQLDYIMASPAFAAKNEHAVPDIIRRG 271
Query: 97 -----------DQSDLDTRRS---KLSTHCPLTIEYDF 120
+ K S HCP+++ +
Sbjct: 272 QPWRTIFPPEQNVDRYPRTGWDRPKASDHCPVSVTLNM 309
>gi|224367727|ref|YP_002601890.1| hypothetical protein HRM2_06120 [Desulfobacterium autotrophicum
HRM2]
gi|223690443|gb|ACN13726.1| conserved hypothetical protein [Desulfobacterium autotrophicum
HRM2]
Length = 251
Score = 38.7 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 28/103 (27%), Gaps = 20/103 (19%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P ++AGDFN + L + T V
Sbjct: 166 QKKPVIVAGDFNSFLGQRE-----LAPFLEATSLKSANTGRLRTFPSR----------VP 210
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ L DLD R +LS H PL ++ +
Sbjct: 211 RMELDFILHSPEII-----IHDLDVPRVRLSDHLPLICDFSLK 248
>gi|313109395|ref|ZP_07795356.1| putative nuclease or phosphatase [Pseudomonas aeruginosa 39016]
gi|310881858|gb|EFQ40452.1| putative nuclease or phosphatase [Pseudomonas aeruginosa 39016]
Length = 379
Score = 38.7 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 32/133 (24%), Gaps = 15/133 (11%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKI--NSIGDTDDFWQKMDPDGLLIRFPQEK 59
L +Q E + D+ P+++ GD N D L
Sbjct: 248 LERQVETTRTLLDELQARRTPWLLGGDLNLLPPGQYPYLLAPLRAPYREDSELAVLSGRF 307
Query: 60 ESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + DR S + + DT ++
Sbjct: 308 PMVPSLEEASGVDQVRWYTHFPNDPRVQGPDRTLDYLFHSPSLTRLDARVRRSDT--LQI 365
Query: 109 STHCPLTIEYDFE 121
S H PL +
Sbjct: 366 SNHLPLAARFLLP 378
>gi|298386087|ref|ZP_06995644.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 1_1_14]
gi|298261315|gb|EFI04182.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 1_1_14]
Length = 611
Score = 38.7 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 37/116 (31%), Gaps = 20/116 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ E LK +A K P +AGD N + S + K I ++
Sbjct: 153 KSLEILKTFAASYKK---PLFLAGDMNAEPESD------FIKELQKEFRILSNPKQ---- 199
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ID D F++VS + + S H P+ +E
Sbjct: 200 ---HTFPAPAPKETIDYVAAFKQNDKGFAVVSSEVVNEPV----ASDHRPIVVELR 248
>gi|291234353|ref|XP_002737115.1| PREDICTED: deoxyribonuclease I-like [Saccoglossus kowalevskii]
Length = 279
Score = 38.7 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 14/106 (13%), Positives = 31/106 (29%), Gaps = 6/106 (5%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+ +I GD+N + + + D + + + N+ + +
Sbjct: 175 NNVNVLIGGDYNADCDYVREDDWQYISYRTQSRFSWLIGDD-ADTNLASSSCAYDRLVTH 233
Query: 79 DRDNKNFLIDNSFSIVSYDQSDL-----DTRRSKLSTHCPLTIEYD 119
+ S + YD T +S H P+ + D
Sbjct: 234 GAGFTDAFRPGSAKVFYYDIDLYGTPMDPTLALDVSDHYPVEMIID 279
>gi|271500992|ref|YP_003334017.1| endonuclease/exonuclease/phosphatase [Dickeya dadantii Ech586]
gi|270344547|gb|ACZ77312.1| Endonuclease/exonuclease/phosphatase [Dickeya dadantii Ech586]
Length = 256
Score = 38.7 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 33/118 (27%), Gaps = 15/118 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ L + P ++AGDFN +M +L R +E
Sbjct: 154 RQQLSLLCDLL-ATLPADAPLIVAGDFNDW------------QMKASAILKRRAGLEEVF 200
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + N+ + V LS H PL +E
Sbjct: 201 SQHFGKPPRTFPARFPLLRLDRIYVRNAKTSVPKLLPSKPWA--HLSDHAPLAVEIHL 256
>gi|242317310|ref|ZP_04816326.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1106b]
gi|242140549|gb|EES26951.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1106b]
Length = 305
Score = 38.7 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ ++
Sbjct: 203 ARAADAIVCGDFNSAYRSDAYRRFLAPFPDAPRFVDAWLARHPGKTPPMTAGVYDTAQWS 262
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F+ D +S + D + S H P+ +E
Sbjct: 263 EGPMTCDFAFVTDTLVRRLSRCEID---GTVRASDHQPIVLELS 303
>gi|116051998|ref|YP_789159.1| hypothetical protein PA14_12670 [Pseudomonas aeruginosa UCBPP-PA14]
gi|254242644|ref|ZP_04935966.1| hypothetical protein PA2G_03405 [Pseudomonas aeruginosa 2192]
gi|296387516|ref|ZP_06876991.1| hypothetical protein PaerPAb_05157 [Pseudomonas aeruginosa PAb1]
gi|115587219|gb|ABJ13234.1| possible nuclease or phosphatase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126196022|gb|EAZ60085.1| hypothetical protein PA2G_03405 [Pseudomonas aeruginosa 2192]
Length = 379
Score = 38.7 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 32/133 (24%), Gaps = 15/133 (11%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKI--NSIGDTDDFWQKMDPDGLLIRFPQEK 59
L +Q E + D+ P+++ GD N D L
Sbjct: 248 LERQVETTRTLLDELQARRTPWLLGGDLNLLPPGQYPYLLAPLRAPYREDSELAVLSGRF 307
Query: 60 ESTCN-----------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + DR S + + DT ++
Sbjct: 308 PMVPSLEEASGVDQVRWYTHFPNDPRVQGPDRTLDYLFHSPSLTRLDARVRRSDT--LQI 365
Query: 109 STHCPLTIEYDFE 121
S H PL +
Sbjct: 366 SNHLPLAARFLLP 378
>gi|317473851|ref|ZP_07933131.1| endonuclease/Exonuclease/phosphatase [Bacteroides eggerthii
1_2_48FAA]
gi|316909928|gb|EFV31602.1| endonuclease/Exonuclease/phosphatase [Bacteroides eggerthii
1_2_48FAA]
Length = 372
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 38/150 (25%), Gaps = 35/150 (23%)
Query: 6 GEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDT------------DDFWQKMDPDGL 51
+ LK D ++T +I GDFN + D +M L
Sbjct: 221 AQRLKNATDSLFHVRTHPQIIIMGDFNDYPGNKSVQKILKAGMPPAETDSLKSQMLYHLL 280
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--------SDLDT 103
+ K + LD+ ++ + + D D
Sbjct: 281 ARKSAANKHFGSYKYQGEWGLLDHIILSGNLLTATSPLYTAEDKADVFHAPFLLTEDKKY 340
Query: 104 RRSKL-------------STHCPLTIEYDF 120
++ S H P+ E+
Sbjct: 341 GDNQPFRTYYGMKYQAGYSDHLPVWAEFRL 370
>gi|229028475|ref|ZP_04184596.1| Sphingomyelinase C [Bacillus cereus AH1271]
gi|228732856|gb|EEL83717.1| Sphingomyelinase C [Bacillus cereus AH1271]
Length = 333
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 198 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 317
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDY-SDHYPVEATISMK 333
>gi|218130390|ref|ZP_03459194.1| hypothetical protein BACEGG_01979 [Bacteroides eggerthii DSM 20697]
gi|217987391|gb|EEC53721.1| hypothetical protein BACEGG_01979 [Bacteroides eggerthii DSM 20697]
Length = 372
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 38/150 (25%), Gaps = 35/150 (23%)
Query: 6 GEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDT------------DDFWQKMDPDGL 51
+ LK D ++T +I GDFN + D +M L
Sbjct: 221 AQRLKNATDSLFHVRTHPQIIIMGDFNDYPGNKSVQKILKAGIPPAETDSLKSQMLYHLL 280
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--------SDLDT 103
+ K + LD+ ++ + + D D
Sbjct: 281 ARKSAANKHFGSYKYQGEWGLLDHIILSGNLLTATSPLYTAEDKADVFHAPFLLTEDKKY 340
Query: 104 RRSKL-------------STHCPLTIEYDF 120
++ S H P+ E+
Sbjct: 341 GDNQPFRTYYGMKYQAGYSDHLPVWAEFRL 370
>gi|260798967|ref|XP_002594471.1| hypothetical protein BRAFLDRAFT_124956 [Branchiostoma floridae]
gi|229279705|gb|EEN50482.1| hypothetical protein BRAFLDRAFT_124956 [Branchiostoma floridae]
Length = 561
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 37/143 (25%), Gaps = 31/143 (21%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI------RFPQEKE 60
L+ A ++ G ++ GD N I D + + +
Sbjct: 164 RLLQTRAQALLQAGSHVIVLGDVNTSHKPIDHCDPDDIEYFSENPGRKWLDQFLLDPHQT 223
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-----------QSDLDTRRSKL- 108
+ K YFV + ++F+ S + R+ L
Sbjct: 224 GDSGSSESEKGPGGYFVDTFRFFHPTQRSAFTCWSTVTGARQTNYGTRIDYIFANRALLN 283
Query: 109 -------------STHCPLTIEY 118
S HCP+ E
Sbjct: 284 QFQDCTIMPEVEGSDHCPVRGEL 306
>gi|218531799|ref|YP_002422615.1| endonuclease/exonuclease/phosphatase [Methylobacterium
chloromethanicum CM4]
gi|218524102|gb|ACK84687.1| Endonuclease/exonuclease/phosphatase [Methylobacterium
chloromethanicum CM4]
Length = 353
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 16/106 (15%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A + KT ++AGD N + L+ Q +
Sbjct: 233 AREVAKTKDSTIVAGDLNDVA-----WSHTNRLFQNISGLLDPRQGRGLFSTFH------ 281
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
Y + + SD+ S H P+ ++
Sbjct: 282 AQYPFARWPLDHIFFSE-----HFLLSDMQRLNDVGSDHFPIWVDL 322
>gi|146282293|ref|YP_001172446.1| hypothetical protein PST_1930 [Pseudomonas stutzeri A1501]
gi|145570498|gb|ABP79604.1| conserved hypothetical protein [Pseudomonas stutzeri A1501]
Length = 365
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 16/109 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A + P +++GD N + L+ + N
Sbjct: 230 ARSIQHSDDPVIVSGDLNDVA-----WSPTTRLFRKISGLLDPRVGRGMY------NTFH 278
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ + +F F V L S H P+ IE ++
Sbjct: 279 AHHWFLRWPLDHFFHSAHFRFV-----RLLRLPDIGSDHFPVFIELQYD 322
>gi|53719141|ref|YP_108127.1| hypothetical protein BPSL1507 [Burkholderia pseudomallei K96243]
gi|67639890|ref|ZP_00438719.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei GB8 horse 4]
gi|124383859|ref|YP_001026065.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei NCTC 10229]
gi|126449985|ref|YP_001080667.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei NCTC 10247]
gi|126454152|ref|YP_001066498.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1106a]
gi|134277293|ref|ZP_01764008.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 305]
gi|167002249|ref|ZP_02268039.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei PRL-20]
gi|167845399|ref|ZP_02470907.1| endonuclease/exonuclease/phosphatase family superfamily protein
[Burkholderia pseudomallei B7210]
gi|167902390|ref|ZP_02489595.1| endonuclease/exonuclease/phosphatase family superfamily protein
[Burkholderia pseudomallei NCTC 13177]
gi|167910632|ref|ZP_02497723.1| endonuclease/exonuclease/phosphatase family superfamily protein
[Burkholderia pseudomallei 112]
gi|217421528|ref|ZP_03453032.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 576]
gi|226197165|ref|ZP_03792742.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei Pakistan 9]
gi|254178197|ref|ZP_04884852.1| endonuclease/exonuclease/phosphatase family superfamily
[Burkholderia mallei ATCC 10399]
gi|254197468|ref|ZP_04903890.1| endonuclease/exonuclease/phosphatase family superfamily
[Burkholderia pseudomallei S13]
gi|254199957|ref|ZP_04906323.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei FMH]
gi|254206290|ref|ZP_04912642.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei JHU]
gi|254297422|ref|ZP_04964875.1| endonuclease/exonuclease/phosphatase family superfamily
[Burkholderia pseudomallei 406e]
gi|254358295|ref|ZP_04974568.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei 2002721280]
gi|52209555|emb|CAH35508.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|124291879|gb|ABN01148.1| endonuclease/exonuclease/phosphatase family superfamily
[Burkholderia mallei NCTC 10229]
gi|126227794|gb|ABN91334.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1106a]
gi|126242855|gb|ABO05948.1| endonuclease/exonuclease/phosphatase family superfamily
[Burkholderia mallei NCTC 10247]
gi|134250943|gb|EBA51022.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 305]
gi|147749553|gb|EDK56627.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei FMH]
gi|147753733|gb|EDK60798.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei JHU]
gi|148027422|gb|EDK85443.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei 2002721280]
gi|157807264|gb|EDO84434.1| endonuclease/exonuclease/phosphatase family superfamily
[Burkholderia pseudomallei 406e]
gi|160699236|gb|EDP89206.1| endonuclease/exonuclease/phosphatase family superfamily
[Burkholderia mallei ATCC 10399]
gi|169654209|gb|EDS86902.1| endonuclease/exonuclease/phosphatase family superfamily
[Burkholderia pseudomallei S13]
gi|217395270|gb|EEC35288.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 576]
gi|225930544|gb|EEH26554.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei Pakistan 9]
gi|238520501|gb|EEP83960.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei GB8 horse 4]
gi|243062066|gb|EES44252.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei PRL-20]
Length = 286
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ ++
Sbjct: 184 ARAADAIVCGDFNSAYRSDAYRRFLAPFPDAPRFVDAWLARHPGKTPPMTAGVYDTAQWS 243
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F+ D +S + D + S H P+ +E
Sbjct: 244 EGPMTCDFAFVTDTLVRRLSRCEID---GTVRASDHQPIVLELS 284
>gi|332359150|gb|EGJ36971.1| RgfB protein [Streptococcus sanguinis SK49]
Length = 271
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K + +K P V+ GDFN + G + +
Sbjct: 159 QGEW-AKLEAELLKVKTPLVLMGDFNNPVGQQGYQTILASPLKLQDSHTAAKEASGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + +S H L ++
Sbjct: 218 --EGTIAGWDDNKHALKIDYVFTSQGMDVERSAVVFDGKETPVVSDHFGLEVQVAL 271
>gi|300508421|pdb|3I41|A Chain A, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant
gi|300508422|pdb|3I41|B Chain B, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant
gi|300508423|pdb|3I46|A Chain A, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant With Bound Calcium Ions
gi|300508424|pdb|3I46|B Chain B, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant With Bound Calcium Ions
gi|300508425|pdb|3I48|A Chain A, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant With Bound Magnesium Ions
gi|300508426|pdb|3I48|B Chain B, Crystal Structure Of Beta Toxin From Staphylococcus Aureus
F277a, P278a Mutant With Bound Magnesium Ions
Length = 317
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 32/129 (24%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 186 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 245
Query: 58 EKESTCNVIKRNKSS----------LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ +S + + N ++ + +
Sbjct: 246 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAAAYYYVYND 305
Query: 108 LSTHCPLTI 116
S H P+
Sbjct: 306 FSDHYPIKA 314
>gi|224044113|ref|XP_002186853.1| PREDICTED: synaptojanin 1 [Taeniopygia guttata]
Length = 1276
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 21/101 (20%), Gaps = 7/101 (6%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ G N D F D +R
Sbjct: 773 FLEGKINFAPTYK--YDLFSDDYDTSEKCRTPAWTDRIL--WRRRKWPFDRSAEDLDLLN 828
Query: 84 NFLIDNSFSIVSYDQSDLDTRRS---KLSTHCPLTIEYDFE 121
+S +++ L K S H P+ D +
Sbjct: 829 ASFHSDSHVPYTWNPGTLLHYGRAELKTSDHRPVVALIDID 869
>gi|83643258|ref|YP_431693.1| extracellular nuclease [Hahella chejuensis KCTC 2396]
gi|83631301|gb|ABC27268.1| predicted extracellular nuclease [Hahella chejuensis KCTC 2396]
Length = 847
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 16/143 (11%), Positives = 34/143 (23%), Gaps = 42/143 (29%)
Query: 21 IPFVIAGDFNRKINSIGD-----TDDFWQKM--------------------DPDGLLIRF 55
+I GD N + + L+
Sbjct: 655 ERILILGDLNAYSKEDPISVLTDYNPATHGYTIKTAANTGMDAGAAVEVSKNYGYALVAE 714
Query: 56 PQEKESTCNVIKRNKSSLDYFV-------IDRDNKNFLIDNSFSI--------VSYDQS- 99
+ E + SLD+ + D ++ +++ + Y S
Sbjct: 715 THDAEGFSYTYDGAQGSLDHILASSAAMEDIVDLDHWNVNSIEAYALQADGLFKYYKDST 774
Query: 100 -DLDTRRSKLSTHCPLTIEYDFE 121
+ S H P+ + + E
Sbjct: 775 GYFGVGPYRSSDHDPVVVTLNLE 797
>gi|15965006|ref|NP_385359.1| hypothetical protein SMc01813 [Sinorhizobium meliloti 1021]
gi|307301078|ref|ZP_07580847.1| Endonuclease/exonuclease/phosphatase [Sinorhizobium meliloti
BL225C]
gi|15074185|emb|CAC45832.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306904033|gb|EFN34619.1| Endonuclease/exonuclease/phosphatase [Sinorhizobium meliloti
BL225C]
Length = 285
Score = 38.3 bits (87), Expect = 0.32, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 29/120 (24%), Gaps = 21/120 (17%)
Query: 3 SQQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++Q E L G P ++ GD N + F +
Sbjct: 166 ARQAETL---LKATADGAGRPTLLIGDLNEWRMGKRSSLSFLSPIFD------------- 209
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+S L + + S D R S H P+ D +
Sbjct: 210 ---PSHSAVASFPSRFPLLPLDRVLGNPHHLVTSVAVHDTPLARV-ASDHLPVKASIDLK 265
>gi|293368711|ref|ZP_06615316.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CMC 3f]
gi|292636176|gb|EFF54663.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CMC 3f]
Length = 361
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 12/92 (13%), Positives = 20/92 (21%), Gaps = 17/92 (18%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN S + + +
Sbjct: 281 IVCGDFNDGSISYTHRILTQKL-------DDAFTQSGKGLGISYNQNKFYF------RID 327
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
N LI + + K S H P+
Sbjct: 328 NILISPNLKAYNCTVDRSI----KASDHYPIW 355
>gi|237717228|ref|ZP_04547709.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|237718983|ref|ZP_04549464.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|262405995|ref|ZP_06082545.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294647971|ref|ZP_06725522.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CC 2a]
gi|294806915|ref|ZP_06765740.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
xylanisolvens SD CC 1b]
gi|298480085|ref|ZP_06998284.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. D22]
gi|229443211|gb|EEO49002.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|229451761|gb|EEO57552.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|262356870|gb|EEZ05960.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292636687|gb|EFF55154.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CC 2a]
gi|294445944|gb|EFG14586.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
xylanisolvens SD CC 1b]
gi|298273894|gb|EFI15456.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. D22]
Length = 361
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 12/92 (13%), Positives = 20/92 (21%), Gaps = 17/92 (18%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN S + + +
Sbjct: 281 IVCGDFNDGSISYTHRILTQKL-------DDAFTQSGKGLGISYNQNKFYF------RID 327
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
N LI + + K S H P+
Sbjct: 328 NILISPNLKAYNCTVDRSI----KASDHYPIW 355
>gi|282911587|ref|ZP_06319387.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282324596|gb|EFB54908.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus WBG10049]
gi|312437570|gb|ADQ76641.1| sphingomyelin phosphodiesterase [Staphylococcus aureus subsp.
aureus TCH60]
Length = 280
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 28/129 (21%), Gaps = 13/129 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 149 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTEEFKDMLKNLNVNDVLYAGHNSTW 208
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 209 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 268
Query: 109 -STHCPLTI 116
S H P+
Sbjct: 269 FSDHYPIKA 277
>gi|167587042|ref|ZP_02379430.1| Endonuclease/exonuclease/phosphatase [Burkholderia ubonensis Bu]
Length = 284
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 10/102 (9%), Positives = 27/102 (26%), Gaps = 1/102 (0%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
++ GDFN +S F + ++ +
Sbjct: 184 AQPRDAIVCGDFNSAYDSDAYRR-FLEPVEGAPRFVDAWAALHPGAAPPPTAGIYDTVQW 242
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + +++ + S H P+ +E +
Sbjct: 243 SEGPLACDFVFVTDTLLPRVARCEIDGDLRASDHQPIVLELN 284
>gi|167523084|ref|XP_001745879.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775680|gb|EDQ89303.1| predicted protein [Monosiga brevicollis MX1]
Length = 364
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 26/110 (23%), Gaps = 6/110 (5%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + P V+AGDFN + + + + + +
Sbjct: 215 QARQ----IATQYAGVEPTVLAGDFNAGCSYLPADKEAEVTIFKSPYTVLI--NDSADTT 268
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
L + + + R +S H P+
Sbjct: 269 STNSVCPYDRIVTFGNIGSRILQSGIINTEAAPFNFDQERAEAVSDHYPI 318
>gi|329956847|ref|ZP_08297415.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
clarus YIT 12056]
gi|328523604|gb|EGF50696.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
clarus YIT 12056]
Length = 370
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 39/150 (26%), Gaps = 35/150 (23%)
Query: 6 GEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------KMDPDGL 51
+ LK+ D +++T ++ GDFN + + L
Sbjct: 219 AQRLKEVTDSLFRVRTHPQIIVMGDFNDYPCNKSVQKILRAGVPPIEADSSDTRALYHLL 278
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--------SDLDT 103
+ +K + LD+ ++ + S + D
Sbjct: 279 ARKNIADKHFGSYKYQGEWGLLDHIILSGNLLITDSPLSTAEAKAGIFSAPFLLTEDKKY 338
Query: 104 RRSKL-------------STHCPLTIEYDF 120
S+ S H P+ E+
Sbjct: 339 GDSQPFRTYYGMKYQAGYSDHLPVWAEFTL 368
>gi|293383838|ref|ZP_06629745.1| RgfB protein [Enterococcus faecalis R712]
gi|293388687|ref|ZP_06633180.1| RgfB protein [Enterococcus faecalis S613]
gi|312906947|ref|ZP_07765943.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis DAPTO 512]
gi|312978798|ref|ZP_07790525.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis DAPTO 516]
gi|291078914|gb|EFE16278.1| RgfB protein [Enterococcus faecalis R712]
gi|291081844|gb|EFE18807.1| RgfB protein [Enterococcus faecalis S613]
gi|310626932|gb|EFQ10215.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis DAPTO 512]
gi|311288505|gb|EFQ67061.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis DAPTO 516]
Length = 274
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 5/113 (4%)
Query: 7 EWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
EWL+ ++ + TG P VI GD N + G + E+ S
Sbjct: 165 EWLQ--LEKYLATGQQPLVILGDLNNPAGTTGYQLVENSYL--PIQDAFVVAEETSGEAT 220
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+++ + + + + Y+ + +S H L I+
Sbjct: 221 VEKKIDGWEENEAALRIDYAFVPKQWHVRKYEVIFDGRKTPIVSDHFGLLIQL 273
>gi|289675835|ref|ZP_06496725.1| endonuclease/exonuclease/phosphatase [Pseudomonas syringae pv.
syringae FF5]
Length = 127
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 30/122 (24%), Gaps = 15/122 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL-------------LIRFPQEK 59
D+ G P++I GDFN Q++
Sbjct: 5 LDKLESGGTPWLIGGDFNLLPLGQYQRLPEQQRLGYAADSELHELWDKYPMIPDNAESSG 64
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + DR S VS DT S +S H P+ +
Sbjct: 65 IDRSKWLTHFPNDSRINGPDRTVDYLFYSPSLKRVSARVRRDDT--SLISDHLPVIGRFL 122
Query: 120 FE 121
Sbjct: 123 LP 124
>gi|256960084|ref|ZP_05564255.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis Merz96]
gi|256950580|gb|EEU67212.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis Merz96]
Length = 264
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 5/113 (4%)
Query: 7 EWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
EWL+ ++ + TG P VI GD N + G + E+ S
Sbjct: 155 EWLQ--LEKYLATGQQPLVILGDLNNPAGTTGYQLVENSYL--PIQDAFVVAEETSGEAT 210
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+++ + + + + Y+ + +S H L I+
Sbjct: 211 VEKKIDGWEENEAALRIDYAFVPKQWHVRKYEVIFDGRKTPIVSDHFGLLIQL 263
>gi|256617827|ref|ZP_05474673.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis ATCC
4200]
gi|257089369|ref|ZP_05583730.1| predicted protein [Enterococcus faecalis CH188]
gi|312904520|ref|ZP_07763679.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0635]
gi|256597354|gb|EEU16530.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis ATCC
4200]
gi|256998181|gb|EEU84701.1| predicted protein [Enterococcus faecalis CH188]
gi|310632218|gb|EFQ15501.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0635]
gi|315577258|gb|EFU89449.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0630]
Length = 274
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 5/113 (4%)
Query: 7 EWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
EWL+ ++ + TG P VI GD N + G + E+ S
Sbjct: 165 EWLQ--LEKYLATGQQPLVILGDLNNPAGTTGYQLVENSYL--PIQDAFVVAEETSGEAT 220
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+++ + + + + Y+ + +S H L I+
Sbjct: 221 VEKKIDGWEENEAALRIDYAFVPKQWHVRKYEVIFDGRKTPIVSDHFGLLIQL 273
>gi|227517879|ref|ZP_03947928.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0104]
gi|227074633|gb|EEI12596.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0104]
Length = 274
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 5/113 (4%)
Query: 7 EWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
EWL+ ++ + TG P VI GD N + G + E+ S
Sbjct: 165 EWLQ--LEKYLATGQQPLVILGDLNNPAGTTGYQLVENSYL--PIQDAFVVAEETSGEAT 220
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+++ + + + + Y+ + +S H L I+
Sbjct: 221 VEKKIDGWEENEAALRIDYAFVPKQWHVRKYEVIFDGRKTPIVSDHFGLLIQL 273
>gi|53726143|ref|YP_103011.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei ATCC 23344]
gi|52429566|gb|AAU50159.1| endonuclease/exonuclease/phosphatase family superfamily
[Burkholderia mallei ATCC 23344]
Length = 324
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ ++
Sbjct: 222 ARAADAIVCGDFNSAYRSDAYRRFLAPFPDAPRFVDAWLARHPGKTPPMTAGVYDTAQWS 281
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F+ D +S + D + S H P+ +E
Sbjct: 282 EGPMTCDFAFVTDTLVRRLSRCEID---GTVRASDHQPIVLELS 322
>gi|29375543|ref|NP_814697.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis V583]
gi|227555071|ref|ZP_03985118.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis HH22]
gi|256964213|ref|ZP_05568384.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis
HIP11704]
gi|257083870|ref|ZP_05578231.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis Fly1]
gi|257418552|ref|ZP_05595546.1| predicted protein [Enterococcus faecalis T11]
gi|300859876|ref|ZP_07105964.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TUSoD Ef11]
gi|307271968|ref|ZP_07553236.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0855]
gi|29343003|gb|AAO80767.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis V583]
gi|227175812|gb|EEI56784.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis HH22]
gi|256954709|gb|EEU71341.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis
HIP11704]
gi|256991900|gb|EEU79202.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis Fly1]
gi|257160380|gb|EEU90340.1| predicted protein [Enterococcus faecalis T11]
gi|300850694|gb|EFK78443.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TUSoD Ef11]
gi|306511474|gb|EFM80476.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0855]
gi|315144339|gb|EFT88355.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX2141]
gi|315162982|gb|EFU06999.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0645]
gi|315167904|gb|EFU11921.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1341]
gi|315574128|gb|EFU86319.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0309B]
gi|315581729|gb|EFU93920.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0309A]
Length = 274
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 5/113 (4%)
Query: 7 EWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
EWL+ ++ + TG P VI GD N + G + E+ S
Sbjct: 165 EWLQ--LEKYLATGQQPLVILGDLNNPAGTTGYQLVENSYL--PIQDAFVVAEETSGEAT 220
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+++ + + + + Y+ + +S H L I+
Sbjct: 221 VEKKIDGWEENEAALRIDYAFVPKQWHVRKYEVIFDGRKTPIVSDHFGLLIQL 273
>gi|293367572|ref|ZP_06614225.1| phospholipase C [Staphylococcus epidermidis M23864:W2(grey)]
gi|291318285|gb|EFE58678.1| phospholipase C [Staphylococcus epidermidis M23864:W2(grey)]
Length = 334
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 29/129 (22%), Gaps = 14/129 (10%)
Query: 1 MLSQQGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK---MDPDGLLIRFP 56
+ Q +K++ D+ I P I GD N +S + +
Sbjct: 200 IRQSQMNEIKQFIKDKNIPKNEPVYIGGDLNVIKDSDEYQQMANNLNVSLPTQFDGNAYS 259
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------- 108
+ S + S + K
Sbjct: 260 WDTSSNSIAKYNYPKLEPQHLDYILLDRDHAQPSSWHNDTHRVKSPEWSVKSWGKTYKYN 319
Query: 109 --STHCPLT 115
S H PL+
Sbjct: 320 DYSDHYPLS 328
>gi|254562926|ref|YP_003070021.1| hypothetical protein METDI4575 [Methylobacterium extorquens DM4]
gi|254270204|emb|CAX26198.1| conserved hypothetical protein; putative membrane protein
[Methylobacterium extorquens DM4]
Length = 348
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 16/106 (15%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A + KT ++AGD N + L+ Q +
Sbjct: 228 AREVAKTKDSTIVAGDLNDVA-----WSHTNRLFQNISGLLDPRQGRGLFSTFH------ 276
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
Y + + SD+ S H P+ ++
Sbjct: 277 AQYPFARWPLDHIFFSE-----HFLLSDMQRLNDVGSDHFPIWVDL 317
>gi|224282535|ref|ZP_03645857.1| hypothetical protein BbifN4_01790 [Bifidobacterium bifidum NCIMB
41171]
Length = 309
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 25/110 (22%), Gaps = 13/110 (11%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L + A + + G +V GDFN + + + + +
Sbjct: 210 LDELASMRSREGSRYVFMGDFNATTDHTPFRNILGNRFSDAAR---QSGHGFTFTWPSNK 266
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ +I + S S H L
Sbjct: 267 LPLPRFAGIDHIVLDKDIIAGQMQVKSVA----------GSDHAALLATI 306
>gi|45185974|ref|NP_983690.1| ACR288Wp [Ashbya gossypii ATCC 10895]
gi|74694735|sp|Q75BI3|CCR4_ASHGO RecName: Full=Glucose-repressible alcohol dehydrogenase
transcriptional effector; AltName: Full=Carbon
catabolite repressor protein 4; AltName:
Full=Cytoplasmic deadenylase
gi|44981764|gb|AAS51514.1| ACR288Wp [Ashbya gossypii ATCC 10895]
Length = 736
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 22/153 (14%), Positives = 41/153 (26%), Gaps = 33/153 (21%)
Query: 5 QGEWLKKWADQKIKTG-----------IPFVIAGDFNRKINS-----------IGDTDDF 42
Q + + ++ +K IP VI GDFN +++S D
Sbjct: 572 QVAVMLDYIEKLLKQHGGVGSPQDKKKIPLVICGDFNSQLDSAVVELFNTGSVRSHKDIE 631
Query: 43 WQKMDPDGLLIRFPQ----------EKESTCNVIKRNKSSLDYFVI-DRDNKNFLIDNSF 91
+ + N+ +DY + + +
Sbjct: 632 GRDFGYMSQKNFAHGLALKSSYGSIGELPFTNLSPTFTDVIDYIWYSTQALRVRGLLGEI 691
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ S H PL ++F KG+
Sbjct: 692 DPAYAAKFIGLPNDKIPSDHIPLLARFEFTKGS 724
>gi|75471487|sp|Q9RLV9|PHLC_LISIV RecName: Full=Sphingomyelinase C; Short=SMase; AltName:
Full=Sphingomyelin phosphodiesterase; Flags: Precursor
gi|6006577|emb|CAA70683.2| sphingomyelinase-c [Listeria ivanovii]
Length = 335
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 16/130 (12%)
Query: 1 MLSQQGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+ ++Q + ++ + + I I GD N + D ++ ++ Q
Sbjct: 201 IRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYHD-MFKLLNVSSPANFNGQMA 259
Query: 60 ESTCNVIKR--------NKSSLDYFVIDRDNK--NFLIDNSFSIVSYDQSDLDTRRSKL- 108
LDY ++ + + + S S ++
Sbjct: 260 TWDPTTNSMLKESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTY 319
Query: 109 ---STHCPLT 115
S H P+
Sbjct: 320 QDFSDHYPVV 329
>gi|88856584|ref|ZP_01131241.1| hypothetical protein A20C1_02524 [marine actinobacterium PHSC20C1]
gi|88814238|gb|EAR24103.1| hypothetical protein A20C1_02524 [marine actinobacterium PHSC20C1]
Length = 239
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 23/124 (18%)
Query: 2 LSQ-QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
L + Q + + Q + +G P ++ GD+N + G ++ + L R
Sbjct: 125 LRRNQIKAAHELL-QTLGSGSPILMVGDYNYPLFKDGLSERVKKTGYDLSLSDRM----- 178
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + ++T S H P+ + +
Sbjct: 179 --TYTNYKFFRGHF--------------DFVTSQGFTIEGVETLARGSSDHLPILVTAAY 222
Query: 121 EKGN 124
N
Sbjct: 223 GSAN 226
>gi|148547712|ref|YP_001267814.1| endonuclease/exonuclease/phosphatase [Pseudomonas putida F1]
gi|148511770|gb|ABQ78630.1| Endonuclease/exonuclease/phosphatase [Pseudomonas putida F1]
Length = 257
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 21/118 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + + P +IAGDFN + + L F S
Sbjct: 161 QRQVKLMLDLLAS-LPPNAPVIIAGDFND-------WRLKADAVLSEHLTEAFGTPARSF 212
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + N+ + S S LS H PL E +
Sbjct: 213 P-----------ARLPLLRLDRIYLRNAVPGAAQVLSKYPW--SHLSDHVPLAAEINL 257
>gi|113969313|ref|YP_733106.1| endonuclease/exonuclease/phosphatase [Shewanella sp. MR-4]
gi|113883997|gb|ABI38049.1| Endonuclease/exonuclease/phosphatase [Shewanella sp. MR-4]
Length = 377
Score = 38.3 bits (87), Expect = 0.33, Method: Composition-based stats.
Identities = 21/164 (12%), Positives = 42/164 (25%), Gaps = 44/164 (26%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNR---------------KINSIGDTDDFWQKMD 47
++ ++ P ++ GDFN ++S +
Sbjct: 214 AEAALLFHAILARRQSAKYPVILMGDFNDSLSLGALDALTLQGEALHSNDIKAAGLGHLS 273
Query: 48 PDGLLIRF-----------------------PQEKESTCNVIKRNKSSLDYFVIDRDNKN 84
L F +E S + S LDY ++ +
Sbjct: 274 DAALAQVFAHYRLQDAYELFIEANLADNAVHYREHRSPTHYYGPKGSVLDYVLLSNEFDA 333
Query: 85 FLIDNSFSIVSYDQSD------LDTRRSKLSTHCPLTIEYDFEK 122
+ +V Y D R + + H P+ +E +
Sbjct: 334 SDSRSLAQVVDYQTCDRHLVRPEYERDAYSTDHAPVIVELALRR 377
>gi|293568956|ref|ZP_06680269.1| endonuclease/exonuclease/phosphatase family [Enterococcus faecium
E1071]
gi|291588389|gb|EFF20224.1| endonuclease/exonuclease/phosphatase family [Enterococcus faecium
E1071]
Length = 246
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 7/114 (6%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+ W D ++K F++AGD N +S G + D L I Q
Sbjct: 135 RMIDWIDSQVKKRTNFIVAGDINCDTDSKGVNFP---QYDFTHLKILANQYDAWLDGNAI 191
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ S + + + + ++ ++ LS H + E +
Sbjct: 192 KKGESTTNPSQKTRIDRIFTNLTIKYIEHSWNEFES----LSDHAVIFSELQLK 241
>gi|269118848|ref|YP_003307025.1| endonuclease/exonuclease/phosphatase [Sebaldella termitidis ATCC
33386]
gi|268612726|gb|ACZ07094.1| Endonuclease/exonuclease/phosphatase [Sebaldella termitidis ATCC
33386]
Length = 283
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 12/97 (12%), Positives = 30/97 (30%), Gaps = 9/97 (9%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++AGDFN +NS + F + + + ++D ++
Sbjct: 193 ILAGDFNDTLNS------VIGREMERYWTTVFDGKTDHRTWPAVNPEVAIDQIFLNNAQV 246
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ ++ +S H P+ ++
Sbjct: 247 WKVEKVYVPNTGTEKDT---DWKTVSDHIPVIVDLKL 280
>gi|224074261|ref|XP_002304326.1| predicted protein [Populus trichocarpa]
gi|222841758|gb|EEE79305.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 17/160 (10%), Positives = 38/160 (23%), Gaps = 48/160 (30%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIG------------DTDDFWQKM-----DPD 49
+ L+K + + G + GD N ++ F +
Sbjct: 168 KILQKRWENLLHEGRRVFVVGDLNIAPTAMDRCDADSDFEKNEFRRWFRSILMMSGGLFV 227
Query: 50 GLLIRFPQEK-ESTCNVIK-------RNKSSLDYFVIDRDNKNF------LIDNSFSIVS 95
+ ++ E+ S +D+ + + S +
Sbjct: 228 DVFRAKHPDRREAYTCWSSSTGAELFNFGSRIDHILCAGPCLHQEHDLQGHNFLSCHVKE 287
Query: 96 YDQSDLDTRRSKL----------------STHCPLTIEYD 119
D +R K S H P+ + +
Sbjct: 288 CDILTQ-YKRWKPGDSTRWKGGRGIKLEGSDHAPVYMSLE 326
>gi|217958262|ref|YP_002336808.1| sphingomyelin phosphodiesterase C [Bacillus cereus AH187]
gi|217066797|gb|ACJ81047.1| sphingomyelin phosphodiesterase C [Bacillus cereus AH187]
Length = 333
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 198 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFVENKVLQPKSPQWTVTSWLKKYTY 317
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 DDY-SDHYPVAATISMK 333
>gi|148975907|ref|ZP_01812696.1| hypothetical protein VSWAT3_06336 [Vibrionales bacterium SWAT-3]
gi|145964652|gb|EDK29905.1| hypothetical protein VSWAT3_06336 [Vibrionales bacterium SWAT-3]
Length = 122
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 12/114 (10%), Positives = 28/114 (24%), Gaps = 10/114 (8%)
Query: 13 ADQKIKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
I + +GDFN + D + + + +
Sbjct: 6 ISLNIPASETVIYSGDFNVNKLKFPSDYQEMFANLQAIEPEYSGYTASTFDPRINNFAGE 65
Query: 72 SLDYFVIDRDNKNFLIDNSFS---------IVSYDQSDLDTRRSKLSTHCPLTI 116
+ ++ + ++ V S + LS H P++
Sbjct: 66 PMSGGENVEYLDYVVVSSEYAVKTQNNNRVDVPRSTSSELWKHYNLSDHFPVSA 119
>gi|167393392|ref|XP_001733520.1| DNA-(apurinic or apyrimidinic site) lyase [Entamoeba dispar SAW760]
gi|165895311|gb|EDR23035.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Entamoeba
dispar SAW760]
Length = 272
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 16/141 (11%), Positives = 35/141 (24%), Gaps = 30/141 (21%)
Query: 1 MLSQQGEW---LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------------- 42
++ + EW +++ + K + GD N + I
Sbjct: 137 LVKRTTEWDKDMREHLKELQKK-KNVIWCGDLNVALRWIDVAKPMTRLRCAGFTKEERAS 195
Query: 43 ----WQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
++++ + ++ ++KS F I
Sbjct: 196 TSETLKELNLVDTFQVKYPKKRDFYTFFSYKDKS----KSAGWRLDYFFISKDLVDSVTQ 251
Query: 98 QSDLDTRRSKLSTHCPLTIEY 118
+ S H PL I
Sbjct: 252 I--YRRKEISASDHVPLIIHI 270
>gi|38346631|emb|CAD40747.2| OSJNBa0072D21.1 [Oryza sativa Japonica Group]
Length = 710
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 15/117 (12%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------FWQKMDPDGLLIRFPQEKE 60
L + + K +P ++ GDFN N +D + + L
Sbjct: 218 LVELVNSCNKEVLPILLGGDFNIIRNPTEKNNDNYSEKWPFLFNAVIDSLDLRELELTGR 277
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
++ L+ + Y S +LS H PL ++
Sbjct: 278 KFTW------ANSSSKPTFEKLDRILMSTEWEQK-YPLSTARALSRELSDHTPLLLD 327
>gi|332884883|gb|EGK05138.1| hypothetical protein HMPREF9456_03051 [Dysgonomonas mossii DSM
22836]
Length = 290
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 27/115 (23%), Gaps = 7/115 (6%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN----- 69
++I P + GD N +NS + D ++
Sbjct: 176 KEIAGDNPVIFMGDLNGGMNSSWAQLLNNSGVLRDTYCDVEHPYANNSSYNAWGKPLEEL 235
Query: 70 -KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR-RSKLSTHCPLTIEYDFEK 122
+ + F + S H P+ + ++ K
Sbjct: 236 DNLDRAIISTNEILDHIYFSKHFKTKRWGMLTDTYNIGKFPSDHFPILVNAEWAK 290
>gi|323357932|ref|YP_004224328.1| hypothetical protein MTES_1484 [Microbacterium testaceum StLB037]
gi|323274303|dbj|BAJ74448.1| hypothetical protein MTES_1484 [Microbacterium testaceum StLB037]
Length = 332
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 9/109 (8%), Positives = 27/109 (24%), Gaps = 9/109 (8%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
W + + ++AGD N ++ + +
Sbjct: 231 DWVAAQCSS-PDVILAGDLNSTLDHLAGLGRNGGTVGECRDAAAEAGAAAVGTWP----- 284
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + L+ +++ + ++ S H P+
Sbjct: 285 -VRLPPGLAAPIDHVLVGSAWEVRGFEVRTDF--DDAGSDHRPIVATLS 330
>gi|260430894|ref|ZP_05784866.1| endonuclease/exonuclease/phosphatase [Silicibacter lacuscaerulensis
ITI-1157]
gi|260418335|gb|EEX11593.1| endonuclease/exonuclease/phosphatase [Silicibacter lacuscaerulensis
ITI-1157]
Length = 333
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 2/116 (1%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E L D +P +I GD N + D D + + + + +
Sbjct: 220 QFEKLLDAVDA-FAPDMPVLIGGDLNTGNHLPPDFDWRRETLFSMAEARGYSWAFTAEGH 278
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + F + L LS H + +
Sbjct: 279 TT-RPSLITPHPDRVMKLDWFAGRGLTCLDRGLLPSLTAEGKPLSDHDCVWCRVEL 333
>gi|258653500|ref|YP_003202656.1| endonuclease/exonuclease/phosphatase [Nakamurella multipartita DSM
44233]
gi|258556725|gb|ACV79667.1| Endonuclease/exonuclease/phosphatase [Nakamurella multipartita DSM
44233]
Length = 263
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 24/114 (21%), Gaps = 19/114 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L G V+ GD N S +
Sbjct: 169 QAHRLADLVTHARGPGDLTVVCGDLNLLPTSHTFQVLAGIGLTDLVGTADTRT------- 221
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + LI + ++ +S H PL +E
Sbjct: 222 --SRYPKPTRH------ASYLLISEPDAARTFTIPAHPE----VSDHRPLVLEI 263
>gi|222641511|gb|EEE69643.1| hypothetical protein OsJ_29252 [Oryza sativa Japonica Group]
Length = 510
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 28/119 (23%), Gaps = 23/119 (19%)
Query: 23 FVIAGDFNRKINSIG----------------DTDDFWQKMDPDGLLI-------RFPQEK 59
V+ GD N +I+ + D + F
Sbjct: 368 VVLLGDLNYRISLEEAETRLLVEDKNWSILLENDQLLIEFSTGRHFDGWQEGLITFSPTY 427
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ N + + + + Q DT +LS H P+ +
Sbjct: 428 KYHPNSDQYYWCFDGALGKKKRAPAWCDRILWRGKGLKQIQYDTCNYRLSDHRPVRAVF 486
>gi|3859942|gb|AAC72921.1| putative endonuclease/reverse transcriptase [Lymantria dispar]
Length = 998
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 7/112 (6%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ ++K ++ G +I GD N K S + + R + +
Sbjct: 129 QLVEKDLKALLELGGAVIIGGDLNAKNTSWSCQSSNKRGKTLELFADRLGFDVIAPIEPT 188
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
D + + + ++ S H P+T+E
Sbjct: 189 H----FPFNVSHRPDILDIFLLKNINLRLCSIEVQHELD---SDHRPVTLEL 233
>gi|116205405|ref|XP_001228513.1| hypothetical protein CHGG_10586 [Chaetomium globosum CBS 148.51]
gi|88176714|gb|EAQ84182.1| hypothetical protein CHGG_10586 [Chaetomium globosum CBS 148.51]
Length = 1437
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 29/112 (25%), Gaps = 19/112 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ-------KMDPDGLLIRFPQEKESTCNV 65
+ + P V+AGDFN K D F + + L +
Sbjct: 530 LQGRPRPSHPVVLAGDFNLK---NPLWDGFGRYDRKSEDLLQLGSLWDLTIRTPRGAT-- 584
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+F + V Y + + S H P +E
Sbjct: 585 --TRAPQGRQRGRPSTIDHFWTSENPQTVYYGE--ECRGK---SDHYPQVLE 629
>gi|71650128|ref|XP_813768.1| pantothenate kinase subunit [Trypanosoma cruzi strain CL Brener]
gi|70878684|gb|EAN91917.1| pantothenate kinase subunit, putative [Trypanosoma cruzi]
Length = 1480
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 27/126 (21%), Gaps = 19/126 (15%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSI--------------GDTDDFWQKMDPDGLLIRFPQ 57
+A+ + IP V+AGDFN + + L
Sbjct: 214 YAENNEASKIPLVVAGDFNINGIDPHNGGKPTKIFMELMQELQPLGGGLSEVILDTHGYH 273
Query: 58 EKESTCN-VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS----KLSTHC 112
+ + F + + + LS H
Sbjct: 274 PSTRPSKLFFPSQSKLNRESLTPQRQDFFFVTPAVDVRMACIKKFIASSRSPYVYLSDHF 333
Query: 113 PLTIEY 118
++
Sbjct: 334 GVSATL 339
>gi|284799781|ref|ZP_05984844.2| endonuclease/exonuclease/phosphatase family protein [Neisseria
subflava NJ9703]
gi|284797131|gb|EFC52478.1| endonuclease/exonuclease/phosphatase family protein [Neisseria
subflava NJ9703]
Length = 249
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 14/114 (12%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + + + I+ P +IAGDFN D + G + +
Sbjct: 135 KQYRAISDYVGRYIRPESPLIIAGDFN---------DWRQKSARELGSALDLNEVFVDNT 185
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ S + + ++ + + LS H PL++
Sbjct: 186 GKRPKTFPSRLPILSLDRI----YTRNLDVIDSEIHNSK-DWQHLSDHLPLSVT 234
>gi|91227439|ref|ZP_01261803.1| extracellular nuclease-related protein [Vibrio alginolyticus 12G01]
gi|91188589|gb|EAS74880.1| extracellular nuclease-related protein [Vibrio alginolyticus 12G01]
Length = 984
Score = 38.3 bits (87), Expect = 0.34, Method: Composition-based stats.
Identities = 14/134 (10%), Positives = 35/134 (26%), Gaps = 28/134 (20%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------------GLLIRFPQEKESTCN 64
P + D++++ + + L ++
Sbjct: 717 EDPLLTLTDYSKEKYGRDIYTAAYTTIGDGELQVEKTKIEKGYGLHNLNTLLHGTDTFSY 776
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LSTH 111
+LD+ + ++ ++ +S+L SK S H
Sbjct: 777 TYSGELGNLDHALASSSLAQKVVAIEDWHINSLESNLFEYSSKYTGDMPKYKDAFSASDH 836
Query: 112 CPLTIEYDFEKGNV 125
P+ I D ++
Sbjct: 837 DPVIIAIDLPDDDI 850
>gi|327461997|gb|EGF08326.1| RgfB protein [Streptococcus sanguinis SK1057]
Length = 271
Score = 38.3 bits (87), Expect = 0.35, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K ++ +K P V+ GDFN + G + +
Sbjct: 159 QGEW-AKLEEELLKVKTPLVLMGDFNNPVGQQGYQTILASPLKLQDSHAVAREAIGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + +S H L ++
Sbjct: 218 --EGTIAGWDDNKHALKIDYVFTSQGMDVERSTVVFDGKETPVVSDHFGLEVQVAL 271
>gi|281210879|gb|EFA85045.1| inositol 5-phosphatase [Polysphondylium pallidum PN500]
Length = 1012
Score = 38.3 bits (87), Expect = 0.35, Method: Composition-based stats.
Identities = 12/122 (9%), Positives = 33/122 (27%), Gaps = 8/122 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ W+ ++ + GDF + D Q ++ + + +E+ +
Sbjct: 554 ESTRWIDDVINKDDDEIKRMIRKGDFAALYDD----DQLKQNLESKRVFAGYREEQITFA 609
Query: 64 NVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD---LDTRRSKLSTHCPLTIEYD 119
S+ + + + + S H P+ I +
Sbjct: 610 PTYKYDFNSTQYDTSPKQRAPAWTDRVLWRNKQAHDVRPLHYSRKEILTSDHRPVRIYFQ 669
Query: 120 FE 121
+
Sbjct: 670 LQ 671
>gi|168012210|ref|XP_001758795.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689932|gb|EDQ76301.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 429
Score = 38.3 bits (87), Expect = 0.35, Method: Composition-based stats.
Identities = 8/79 (10%), Positives = 17/79 (21%)
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ + + + +S + D S Y
Sbjct: 168 KFNLLKAHLQVSDYFTYTGPRTYTWDNRRSDGTRVLARLDRTYTFHSPSGQQSQYVTQHE 227
Query: 102 DTRRSKLSTHCPLTIEYDF 120
LS H P+ + +
Sbjct: 228 IMGDCNLSDHLPIKLSIEL 246
>gi|26989983|ref|NP_745408.1| endonuclease/exonuclease/phosphatase [Pseudomonas putida KT2440]
gi|24984902|gb|AAN68872.1|AE016519_5 conserved hypothetical protein [Pseudomonas putida KT2440]
Length = 257
Score = 38.3 bits (87), Expect = 0.35, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 21/118 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + + P +IAGDFN + + L F S
Sbjct: 161 QRQVKLMLDLLAS-LPPNAPVIIAGDFND-------WRLKADAVLSEHLTEAFGTPARSF 212
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + N+ + S S LS H PL E +
Sbjct: 213 P-----------ARLPLLRLDRIYLRNAVPGAAQVLSKYPW--SHLSDHVPLAAEINL 257
>gi|146421619|ref|XP_001486754.1| hypothetical protein PGUG_00131 [Meyerozyma guilliermondii ATCC
6260]
Length = 364
Score = 38.3 bits (87), Expect = 0.35, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 36/136 (26%), Gaps = 25/136 (18%)
Query: 9 LKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDP-----DGLLIRFPQEKES 61
L + K++ P + GDFN + M D L +
Sbjct: 223 LAQLIANKMENYNNYPSFLCGDFNTQPTDEPYQILIKHGMKDSRALIDHLHHYGHTGTFT 282
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV----SYDQSDLDT-------------- 103
N S +DY +N S Y+ T
Sbjct: 283 GFNKHNEANSVIDYVWAPYFAENGNDQPSMETTESINYYNWDFHKTHKIALRSFAILHSY 342
Query: 104 RRSKLSTHCPLTIEYD 119
+S H P++ +YD
Sbjct: 343 YDFYMSDHRPVSADYD 358
>gi|282863431|ref|ZP_06272490.1| Endonuclease/exonuclease/phosphatase [Streptomyces sp. ACTE]
gi|282561766|gb|EFB67309.1| Endonuclease/exonuclease/phosphatase [Streptomyces sp. ACTE]
Length = 285
Score = 38.3 bits (87), Expect = 0.35, Method: Composition-based stats.
Identities = 9/101 (8%), Positives = 24/101 (23%), Gaps = 20/101 (19%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN ++ W+++
Sbjct: 203 ILLGDFNATPDAPEL-APLWKELTDADPGAPTFPA-----------------ADPVNRID 244
Query: 84 NFLIDNSFSIVS--YDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + + + S H PL + + +
Sbjct: 245 FVAVSKAGRTGAGQVRVREAAVAETLASDHRPLVADLELRR 285
>gi|290963006|ref|YP_003494188.1| hypothetical protein SCAB_87261 [Streptomyces scabiei 87.22]
gi|260652532|emb|CBG75665.1| putative secreted protein [Streptomyces scabiei 87.22]
Length = 289
Score = 38.3 bits (87), Expect = 0.35, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 36/122 (29%), Gaps = 23/122 (18%)
Query: 3 SQQGEWLK----KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE 58
+Q E ++ +++ ++ GDFN +S W+ R P E
Sbjct: 186 RRQ-EAIRADQVDVLAEEVARHDRAIVVGDFNAVPDSAEL-APMWKVAKDADTACRPPSE 243
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
C + +S DY + V +S S H + +
Sbjct: 244 GA--CGLTTDWQSKFDYVF------LRGVSPLAQRVRLSES---------SDHNLVYADV 286
Query: 119 DF 120
D
Sbjct: 287 DL 288
>gi|254882565|ref|ZP_05255275.1| endonuclease/exonuclease/phosphatase family [Bacteroides sp.
4_3_47FAA]
gi|319642095|ref|ZP_07996761.1| hypothetical protein HMPREF9011_02361 [Bacteroides sp. 3_1_40A]
gi|254835358|gb|EET15667.1| endonuclease/exonuclease/phosphatase family [Bacteroides sp.
4_3_47FAA]
gi|317386361|gb|EFV67274.1| hypothetical protein HMPREF9011_02361 [Bacteroides sp. 3_1_40A]
Length = 336
Score = 38.3 bits (87), Expect = 0.35, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 28/132 (21%), Gaps = 25/132 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFW----QKMDPDGLLIRFPQEKESTCNVIKRNKS 71
++ +I GDFN + + L ++ +
Sbjct: 205 NLRQHPNVMIMGDFNDYPTNNSIAKVLGAVAPKGEVQAKKLYNLMDGRKEGTYRYRGEWG 264
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT---------------------RRSKLST 110
LD ++ S S
Sbjct: 265 VLDQLIVSGFLLQGHDSMRTSYDKAQILKYPFLLEEDEKYGGDIPSRTYWGKKYHGGYSD 324
Query: 111 HCPLTIEYDFEK 122
H P+ ++++ K
Sbjct: 325 HLPVCVDFEIGK 336
>gi|315499225|ref|YP_004088029.1| endonuclease/exonuclease/phosphatase [Asticcacaulis excentricus CB
48]
gi|315417237|gb|ADU13878.1| Endonuclease/exonuclease/phosphatase [Asticcacaulis excentricus CB
48]
Length = 303
Score = 38.3 bits (87), Expect = 0.35, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 15/119 (12%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L+Q+ +L + + ++ P ++ GDFN + ++ L P+
Sbjct: 199 LLTQRNSYLARLPELIARSDKPQLVMGDFNATP-----WEPLVARLKSKAGLHEAPRLVP 253
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + + ++ + T S H PL E+
Sbjct: 254 LST-----RMAVRRQLDVGSPIDHIMASHTVHLRHC-----RTGPVMASDHRPLICEFS 302
>gi|198422742|ref|XP_002124404.1| PREDICTED: similar to endonuclease/exonuclease/phosphatase family
domain containing 1 [Ciona intestinalis]
Length = 560
Score = 38.3 bits (87), Expect = 0.35, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 31/117 (26%), Gaps = 3/117 (2%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L + + + D++ K VI GDF+ + + P
Sbjct: 418 LPEILDAVDHHLDEEEK---VVVILGDFSVGPDETEFEALGAKSYKPVIPCNVPTNINRK 474
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + + D + +S HCP ++
Sbjct: 475 DMKGSRCRDNLWLNQSATALYTSEWKVVRNGLTNPWIPDGWSWGGVVSDHCPAWVQL 531
>gi|145297705|ref|YP_001140546.1| phospholipase C precursor [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142850477|gb|ABO88798.1| putative phospholipase C precursor [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 438
Score = 38.3 bits (87), Expect = 0.35, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 30/125 (24%), Gaps = 12/125 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q L I + GDFN D +D E
Sbjct: 315 QIRTLAASLK--IPASDTVIYGGDFNVNKRKFADDYASMLANLDAHEPGYGGYTEATFDP 372
Query: 64 NVIKRNKS---------SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ LDY V+ R+ + + + S LS H P+
Sbjct: 373 RINPYAGGPLSGGANVEYLDYLVVSREYGAASHNLNSVWIPRSSDGSLWPASNLSDHFPV 432
Query: 115 TIEYD 119
E
Sbjct: 433 KGEIS 437
>gi|298674416|ref|YP_003726166.1| deoxyribonuclease I [Methanohalobium evestigatum Z-7303]
gi|298287404|gb|ADI73370.1| Deoxyribonuclease I [Methanohalobium evestigatum Z-7303]
Length = 447
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 31/112 (27%), Gaps = 8/112 (7%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+ ++ +K F++ GD N + + +D + +
Sbjct: 207 VVEYTHEKYSEERDFIVMGDLNADGSYFDE------DLDSTMHNDYYYWCIGDDIDTTTG 260
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPLTIEY 118
+ +I + + I YD +S H P+ +
Sbjct: 261 STDYTYDRIIITEPAMEDFTDDAHIYRYDDKYDLKHDETMDVSDHYPVYATF 312
>gi|281210289|gb|EFA84456.1| hypothetical protein PPL_02489 [Polysphondylium pallidum PN500]
Length = 692
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 9/116 (7%)
Query: 13 ADQKIKTGIPFVIAGDFNRKI------NSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
D K++T ++AGDFN + D + + +
Sbjct: 340 LDYKLETNTIDLMAGDFNCLSPFSPSFSKADDEELCHTIESLASVNSLVDTGLSADTPTF 399
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
L + R + ++ + + + S HCP++++ +
Sbjct: 400 SCTNHPLPISLSPRRLDRIYVASTMLGGNPAVATYFHNK---SDHCPVSVDINLSS 452
>gi|255066357|ref|ZP_05318212.1| endonuclease/exonuclease/phosphatase family protein [Neisseria
sicca ATCC 29256]
gi|255049237|gb|EET44701.1| endonuclease/exonuclease/phosphatase family protein [Neisseria
sicca ATCC 29256]
Length = 241
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 14/115 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q + ++ I P ++AGDFN + ++
Sbjct: 135 AKQYRAIFEYVVHHIDPQSPLILAGDFNDWRQKSALSLGNALNLNEV------------- 181
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
V K + + V Q +LS H PL+++
Sbjct: 182 -FVDSNGKRPKTFPARLPVLSLDRVYTRNLEVLDSQIHNGKNWQRLSDHLPLSVK 235
>gi|227543866|ref|ZP_03973915.1| exodeoxyribonuclease III [Lactobacillus reuteri CF48-3A]
gi|300909611|ref|ZP_07127072.1| exodeoxyribonuclease III [Lactobacillus reuteri SD2112]
gi|227186154|gb|EEI66225.1| exodeoxyribonuclease III [Lactobacillus reuteri CF48-3A]
gi|300893476|gb|EFK86835.1| exodeoxyribonuclease III [Lactobacillus reuteri SD2112]
Length = 174
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 25/131 (19%)
Query: 7 EWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------M 46
+W + + D +++ P +I GD + I +
Sbjct: 42 DWDRAFLDYVTNLQSSKPVIIGGDMSVAYQPIDLAEPTEDHHKAGFTKQERADFGKLLNA 101
Query: 47 DPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ R + FL+ + + + L
Sbjct: 102 GLTDTFRYLHPNLHGAYTWWNYRYDARERNVGW--RLNYFLVSDVWKERIEEAKILS--D 157
Query: 106 SKLSTHCPLTI 116
K S+HCP+ +
Sbjct: 158 VKGSSHCPIEL 168
>gi|255101285|ref|ZP_05330262.1| putative endonuclease/exonuclease/phosphatase [Clostridium
difficile QCD-63q42]
Length = 209
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 28/116 (24%)
Query: 2 LSQQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
L +Q + L + D + + ++ GDFN K + +D ++ L
Sbjct: 117 LDRQERAKQLDEIIDYRNRLVGIVILCGDFNEKNVFLSMFNDMAISLNKSYLPTFEKSNS 176
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
++ + + Y + LS H P+
Sbjct: 177 ---------------------RIDYIFVNKNTELKGYTVEKI-----YLSDHYPVI 206
>gi|242775749|ref|XP_002478702.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Talaromyces stipitatus ATCC 10500]
gi|218722321|gb|EED21739.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Talaromyces stipitatus ATCC 10500]
Length = 1124
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 33/128 (25%), Gaps = 17/128 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIRFPQEKEST 62
L+ ++ I+ + GDFN + + + ++ L +
Sbjct: 778 LRFRYNRSIEDHDAIIWLGDFNYRIGLENQEVRQLIKKNEFSRLYDHDQLNLQMLAGRTF 837
Query: 63 CN---------VIKRNKSSLDYFVIDR--DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ D + + + Q D K S H
Sbjct: 838 PFYSEGLIRFPPTYKYDLGTDNYDTSDKARIPAWCDRVLWKGGCLKQIDYAAADLKTSDH 897
Query: 112 CPLTIEYD 119
P++ +D
Sbjct: 898 RPVSSLFD 905
>gi|150004910|ref|YP_001299654.1| hypothetical protein BVU_2373 [Bacteroides vulgatus ATCC 8482]
gi|149933334|gb|ABR40032.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
Length = 336
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 28/132 (21%), Gaps = 25/132 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFW----QKMDPDGLLIRFPQEKESTCNVIKRNKS 71
++ +I GDFN + + L ++ +
Sbjct: 205 NLRQHPNVMIMGDFNDYPTNNSIAKVLGAVAPKGEVQAKKLYNLMDGRKEGTYRYRGEWG 264
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT---------------------RRSKLST 110
LD ++ S S
Sbjct: 265 VLDQLIVSGFLLQGHDSMRTSYDKAQILKYPFLLEEDEKYGGDIPSRTYWGKKYHGGYSD 324
Query: 111 HCPLTIEYDFEK 122
H P+ ++++ K
Sbjct: 325 HLPVCVDFEIGK 336
>gi|126699766|ref|YP_001088663.1| putative endonuclease/exonuclease/phosphatase [Clostridium
difficile 630]
gi|254975745|ref|ZP_05272217.1| putative endonuclease/exonuclease/phosphatase [Clostridium
difficile QCD-66c26]
gi|255093132|ref|ZP_05322610.1| putative endonuclease/exonuclease/phosphatase [Clostridium
difficile CIP 107932]
gi|255307161|ref|ZP_05351332.1| putative endonuclease/exonuclease/phosphatase [Clostridium
difficile ATCC 43255]
gi|255314874|ref|ZP_05356457.1| putative endonuclease/exonuclease/phosphatase [Clostridium
difficile QCD-76w55]
gi|255517548|ref|ZP_05385224.1| putative endonuclease/exonuclease/phosphatase [Clostridium
difficile QCD-97b34]
gi|255650659|ref|ZP_05397561.1| putative endonuclease/exonuclease/phosphatase [Clostridium
difficile QCD-37x79]
gi|260683749|ref|YP_003215034.1| putative endonuclease/exonuclease/phosphatase [Clostridium
difficile CD196]
gi|260687409|ref|YP_003218543.1| putative endonuclease/exonuclease/phosphatase [Clostridium
difficile R20291]
gi|306520587|ref|ZP_07406934.1| putative endonuclease/exonuclease/phosphatase [Clostridium
difficile QCD-32g58]
gi|115251203|emb|CAJ69034.1| putative endonuclease/exonuclease/phosphatase [Clostridium
difficile]
gi|260209912|emb|CBA63862.1| putative endonuclease/exonuclease/phosphatase [Clostridium
difficile CD196]
gi|260213426|emb|CBE05082.1| putative endonuclease/exonuclease/phosphatase [Clostridium
difficile R20291]
Length = 209
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 28/116 (24%)
Query: 2 LSQQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
L +Q + L + D + + ++ GDFN K + +D ++ L
Sbjct: 117 LDRQERAKQLDEIIDYRNRLVGIVILCGDFNEKNVFLSMFNDMAISLNKSYLPTFEKSNS 176
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
++ + + Y + LS H P+
Sbjct: 177 ---------------------RIDYIFVNKNTELKGYTVEKI-----YLSDHYPVI 206
>gi|238501800|ref|XP_002382134.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
gi|220692371|gb|EED48718.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
Length = 304
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 9/126 (7%)
Query: 4 QQGEWLKKWADQKIKTG----IPFVIAGDFNRKINS--IGDTDDFWQKMDPDGLLIRFPQ 57
+ + + +W ++ +K V+ GDFN M + +
Sbjct: 172 ESAKLILEWMEEVLKKDSDSVEGVVLCGDFNTNSRENNDAFGVLTAGAMVHTRDCVDGER 231
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS--FSIVSYDQSDLDTRRS-KLSTHCPL 114
+ + N + +D ++D L ++I +Y S H +
Sbjct: 232 RYGNVNSWTGFNDTPIDDALLDYVLVGPLKSGHVPWNIRTYGILTNRFDDGIFNSDHRAV 291
Query: 115 TIEYDF 120
+ +
Sbjct: 292 AADVEL 297
>gi|167523032|ref|XP_001745853.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775654|gb|EDQ89277.1| predicted protein [Monosiga brevicollis MX1]
Length = 513
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 36/142 (25%), Gaps = 25/142 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD---------------TDDFWQ------- 44
++ + + IP +I GDFN +S D +
Sbjct: 370 REIENFLKEHNCPNIPVMIMGDFNSMHDSGVYELMENGKYCVQPLMGEDWGYDYSKFIES 429
Query: 45 -KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--DL 101
+ + L + N +DY + +Y Q D
Sbjct: 430 VGLHHNLKLRSAYGNELPYSNYTPTFVGIIDYIWYSAERLIPSALLGPVEEAYIQEHVDG 489
Query: 102 DTRRSKLSTHCPLTIEYDFEKG 123
S H L+ E+ K
Sbjct: 490 CPNPHFASDHLALSAEFRINKS 511
>gi|5410438|gb|AAD43059.1|AF134171_2 pol [Dictyostelium discoideum]
Length = 1147
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN + +K+ + E R+ LD
Sbjct: 136 IIAGDFNNNHDCNSFFGTELRKIIDQDM--LLDTGIEENTPTFPRSMKRLDRIYCHPTLL 193
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N +++ S H P+TI
Sbjct: 194 NQNSKLVVHNTVFNK----------SDHFPITITIQ 219
>gi|327193878|gb|EGE60754.1| putative endonuclease/exonuclease/phosphatase family protein
[Rhizobium etli CNPAF512]
Length = 369
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 7/85 (8%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY----DQS 99
Q +D L +++ C + S + + + +
Sbjct: 285 QPLDRWTLYHARGPQEQHLCQLDYIWLSPALATHNSGRLPEIIRNGQPYRTVFPPGQEVE 344
Query: 100 DLDTRRS---KLSTHCPLTIEYDFE 121
K S HCP+ + D
Sbjct: 345 RYPRTGWDRPKASDHCPVVMTLDLP 369
>gi|327306001|ref|XP_003237692.1| DNA lyase [Trichophyton rubrum CBS 118892]
gi|326460690|gb|EGD86143.1| DNA lyase [Trichophyton rubrum CBS 118892]
Length = 603
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 9/86 (10%), Positives = 19/86 (22%), Gaps = 4/86 (4%)
Query: 34 NSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSI 93
++ D + D P ++ + L ++
Sbjct: 242 STADTHDTETPPVLRDLCREFHPGRTGMYTCWNQKVNA--RPGNYGSRIDYILCSDNIR- 298
Query: 94 VSYDQSDLDTRRSKLSTHCPLTIEYD 119
S+ S HCP+
Sbjct: 299 -SWFVESNIQEGLMGSDHCPVYASIS 323
>gi|324999709|ref|ZP_08120821.1| hypothetical protein PseP1_13115 [Pseudonocardia sp. P1]
Length = 196
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 25/121 (20%), Gaps = 21/121 (17%)
Query: 7 EWLKKWADQKI------KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
L W D+ + ++AGD N ++ D
Sbjct: 84 RRLASWRDELALIGSWTRARPAPIVAGDLNAVLDHRRLRVALGGCRDVAEGTGHGAAGTF 143
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + L+ S Y R S H + +
Sbjct: 144 PSSWPRW----------AGIRIDHVLVPRRSSTHRYAV-----RELPGSDHRAVLVRVAL 188
Query: 121 E 121
Sbjct: 189 P 189
>gi|229015755|ref|ZP_04172735.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1273]
gi|229021962|ref|ZP_04178522.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1272]
gi|228739337|gb|EEL89773.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1272]
gi|228745543|gb|EEL95565.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1273]
Length = 263
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + + GDFN ++ G + + L ++ ++
Sbjct: 156 DRLMERVNSNELSFLMGDFNNNARLEGEGYEYMMQKGLYDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S ++ S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKHNLRIDLILCNQSKTVHSSKVIFNGTNRNVISDHFGVEMQLD 262
>gi|224118024|ref|XP_002317714.1| predicted protein [Populus trichocarpa]
gi|222858387|gb|EEE95934.1| predicted protein [Populus trichocarpa]
Length = 399
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 30/129 (23%), Gaps = 23/129 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIG----------------DTDDFWQKMDPDGLL---- 52
+KI + GD N +I + D ++ +
Sbjct: 254 LPRKILDHDQVIWLGDLNYRIYLPDTKTRYLVQKKEWNIMLEKDQLKAELMEGHVFQGWN 313
Query: 53 ---IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
I F + N + + + Q S+LS
Sbjct: 314 EGKIEFAPTYKYYQNSQVYYGCDQKRKGEKKRAPAWCDRIIWFGKGLKQKQYSRGESRLS 373
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 374 DHRPVRAIF 382
>gi|213423707|ref|ZP_03356687.1| hypothetical protein Salmonentericaenterica_40228 [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 206
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 18/119 (15%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L W + + P ++AGDFN ++ GL +E
Sbjct: 104 RQAQLTMLAGWVNA-LPESEPVLVAGDFNDW------RQKAGPPLNAAGL-------EEI 149
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + + N+ S + LS H PL+ E
Sbjct: 150 FTRAHGRPARTFPVSMPLLRLDRIYVKNA--NASSPGALPLRNWRHLSDHAPLSAEIHL 206
>gi|221068733|ref|ZP_03544838.1| Endonuclease/exonuclease/phosphatase [Comamonas testosteroni KF-1]
gi|220713756|gb|EED69124.1| Endonuclease/exonuclease/phosphatase [Comamonas testosteroni KF-1]
Length = 291
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 31/140 (22%), Gaps = 30/140 (21%)
Query: 2 LSQQGEWLKKWADQKIKTGIPF---------VIAGDFNRKINSIGD------TDDFWQKM 46
L Q L Q G P+ V+ GDFN + + Q
Sbjct: 160 LQMQACALADAPPQPASDGSPYQTKPHTRHAVLCGDFNFEPHEPEYAVLSAPWAAGEQGC 219
Query: 47 DPDGLLIRFP-------QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
G + + V + + + + + V
Sbjct: 220 LQAGQWRNSWDLLHPGQPQPPTFRLVDRTWGAEPGACDLLWVSDSLCQHVQAWRVDSTTE 279
Query: 100 DLDTRRSKLSTHCPLTIEYD 119
S H P+ +
Sbjct: 280 --------ASDHQPVMLTLS 291
>gi|300723413|ref|YP_003712716.1| exonuclease III [Xenorhabdus nematophila ATCC 19061]
gi|297629933|emb|CBJ90553.1| exonuclease III [Xenorhabdus nematophila ATCC 19061]
Length = 277
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 24/126 (19%), Gaps = 27/126 (21%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD------------------------TDDF 42
+ L+ + +I GD N +
Sbjct: 130 QDLQSYLGNNHSPESNILIMGDMNISPTDSDIGIGENNQKRWLKTGKCSFLPEEREWMER 189
Query: 43 WQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ E R+K D L + VS S +
Sbjct: 190 LKNWGFIDTFRFQYPEANDQFSWFDYRSKGFDDNRG--LRIDLLLASHWLKGVSLQVSIM 247
Query: 102 DTRRSK 107
+ K
Sbjct: 248 SSAAWK 253
>gi|293395492|ref|ZP_06639776.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
gi|291422176|gb|EFE95421.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
Length = 389
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 25/105 (23%), Gaps = 16/105 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ +P ++ GD N + L+ + +
Sbjct: 259 KSVVDAKLPVIVTGDLNDVA-----WSTTTRLFLKVSGLLDPRRGRGMFSTFHSGYPFLR 313
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ +F++ + L S H P+ E
Sbjct: 314 WPLDHVFHSDDFILGS-----------LRRLPDIGSDHFPIMAEL 347
>gi|291394670|ref|XP_002713802.1| PREDICTED: endonuclease/exonuclease/phosphatase family domain
containing 1 [Oryctolagus cuniculus]
Length = 568
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 29/106 (27%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ +K +I GDF + S +K P F + +
Sbjct: 432 LQETLKGEKDVIILGDFGQGPESSDCDVLRREKFHPLVPAHTFTNISTKNPQGSRSLDNI 491
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + D + S HCP+ E+
Sbjct: 492 WISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEF 537
>gi|260834073|ref|XP_002612036.1| hypothetical protein BRAFLDRAFT_127247 [Branchiostoma floridae]
gi|229297409|gb|EEN68045.1| hypothetical protein BRAFLDRAFT_127247 [Branchiostoma floridae]
Length = 333
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 32/123 (26%), Gaps = 7/123 (5%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + ++ T ++ GD N + +G D L +
Sbjct: 97 QAFEISQFIRSTGGTADLNILTGDLNFRPGELGLKIIQSDTGMEDAWLTAEHKN-ADDSG 155
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNS----FSIVSYDQ--SDLDTRRSKLSTHCPLTIEY 118
V + + + L S V + + + S H + +
Sbjct: 156 VTGNHPENNFATGNQQRIDYILYKGSTECKVKCVHCETTMHKVPGKPFNYSDHEAVLAHF 215
Query: 119 DFE 121
+ E
Sbjct: 216 ELE 218
>gi|209550061|ref|YP_002281978.1| endonuclease/exonuclease/phosphatase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209535817|gb|ACI55752.1| Endonuclease/exonuclease/phosphatase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 369
Score = 38.3 bits (87), Expect = 0.36, Method: Composition-based stats.
Identities = 10/85 (11%), Positives = 20/85 (23%), Gaps = 7/85 (8%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY----DQS 99
+D L +++ C + S + + +
Sbjct: 285 AALDRWTLYHSRGPQEQWLCQLDYLWLSPDLAAHNAGRLPEIIRSGQPYRTIFPPGQEVE 344
Query: 100 DLDTRRS---KLSTHCPLTIEYDFE 121
K S HCP+ + D
Sbjct: 345 RYPRTGWDRPKASDHCPVVMTLDLP 369
>gi|26398005|sp|P59116|PHL2_LEPIN RecName: Full=Sphingomyelinase C 2; AltName: Full=Sphingomyelin
phosphodiesterase 2; Short=SMase 2; Flags: Precursor
Length = 623
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 37/121 (30%), Gaps = 10/121 (8%)
Query: 5 QGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR--FPQEKES 61
Q + ++ + + I +I GD N S D + + + F + ++
Sbjct: 317 QFDDIRNFIYSKNIPKDETVLIVGDLNVIKESNEYYDMISRLNVNEPRYVGVPFTWDAKT 376
Query: 62 TCNVIKRNKS----SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL---STHCPL 114
++ LDY + + + + + + + S H P+
Sbjct: 377 NEIAAYYYENEEPVYLDYIFVSKSHAQPPVWQNLAYDPVSKQTWTVSGYTSDEFSDHYPI 436
Query: 115 T 115
Sbjct: 437 Y 437
>gi|322831641|ref|YP_004211668.1| Endonuclease/exonuclease/phosphatase [Rahnella sp. Y9602]
gi|321166842|gb|ADW72541.1| Endonuclease/exonuclease/phosphatase [Rahnella sp. Y9602]
Length = 266
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 21/105 (20%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q P ++AGDFN Q+++ +E R ++
Sbjct: 175 EQIANHKGPVIMAGDFNA---------WSKQRINALFGFAGNIHLEEVRFPSDYRKRAFG 225
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S + S H PL +E+
Sbjct: 226 RPLDFIFYRDLSVTSASVMET------------RASDHNPLRVEF 258
>gi|213028732|ref|ZP_03343179.1| hypothetical protein Salmonelentericaenterica_43473 [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 126
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 18/119 (15%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L W + + P ++AGDFN ++ GL +E
Sbjct: 24 RQAQLTMLAGWVNA-LPESEPVLVAGDFNDW------RQKAGPPLNAAGL-------EEI 69
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + + N+ + LS H PL+ E
Sbjct: 70 FTRAHGRPARTFPVSMPLLRLDRIYVKNANASSPGALP--LRNWRHLSDHAPLSAEIHL 126
>gi|194692842|gb|ACF80505.1| unknown [Zea mays]
Length = 265
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 7/72 (9%), Positives = 14/72 (19%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + R + R + + Q
Sbjct: 147 RVFQGWKEGRIYFPPTYKYSFNSDRYAGEGRHPKEKRRTPAWCDRILWHGNGLSQLCYVR 206
Query: 104 RRSKLSTHCPLT 115
S+ S H P+
Sbjct: 207 GESRFSDHRPVY 218
>gi|167836386|ref|ZP_02463269.1| endonuclease/exonuclease/phosphatase family superfamily protein
[Burkholderia thailandensis MSMB43]
Length = 128
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 25/105 (23%), Gaps = 7/105 (6%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ ++ +
Sbjct: 26 ARAADAIVCGDFNSAYRSDAYRRFLAPFPDAPRFVDAWLARHPGKTPPMTAGVYDTAQWH 85
Query: 76 FVIDR-DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
D + I + + S H P+ +E
Sbjct: 86 EGPMTCDFVFVTDTLAHRISRCEID----GAVRASDHQPIVLELS 126
>gi|73976315|ref|XP_865627.1| PREDICTED: hypothetical protein XP_860534 isoform 3 [Canis
familiaris]
Length = 569
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 14/113 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ +K ++ GDF + +S + + + P +
Sbjct: 433 LQETLKGEKDMIVLGDFGQGPDSSDYDILRKEKFYHLVPAHTFTNISTKNPQGSKS---- 488
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEY 118
LD I + K + + + D + S HCP+ E+
Sbjct: 489 ---LDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEF 538
>gi|73976313|ref|XP_539516.2| PREDICTED: hypothetical protein XP_539516 isoform 2 [Canis
familiaris]
Length = 564
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 14/113 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ +K ++ GDF + +S + + + P +
Sbjct: 428 LQETLKGEKDMIVLGDFGQGPDSSDYDILRKEKFYHLVPAHTFTNISTKNPQGSKS---- 483
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEY 118
LD I + K + + + D + S HCP+ E+
Sbjct: 484 ---LDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEF 533
>gi|121601098|ref|YP_993160.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
mallei SAVP1]
gi|121229908|gb|ABM52426.1| endonuclease/exonuclease/phosphatase family superfamily
[Burkholderia mallei SAVP1]
Length = 286
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ ++
Sbjct: 184 ARAADAIVCGDFNSAYRSDAYRRFLAPFPDAPRFVDAWLARHPGKTPPMTAGVYDTAQWS 243
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F+ D +S + D + S H P+ +E
Sbjct: 244 EGPMTCDFAFVTDTLVRRLSRCEID---GTVRASDHQPIVLELS 284
>gi|332864503|ref|XP_001169567.2| PREDICTED: endonuclease/exonuclease/phosphatase family
domain-containing protein 1 isoform 2 [Pan troglodytes]
Length = 569
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 14/113 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ +K +I GDF + +S + + + P +
Sbjct: 433 LQETLKGEKDVIILGDFGQGPDSNDYDILRKEKFHHLIPAHTFTNISTKNPQGSKS---- 488
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEY 118
LD I + K + + + D + S HCP+ E
Sbjct: 489 ---LDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEL 538
>gi|328354255|emb|CCA40652.1| CCR4-NOT transcription complex subunit 6 [Pichia pastoris CBS 7435]
Length = 743
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 25/147 (17%), Positives = 39/147 (26%), Gaps = 24/147 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L + ++K K T +P +I GDFN K++S F Q I +
Sbjct: 578 LLDELQAVIRKHLSPKDITKVPLLICGDFNSKVHS-AVYQLFSQGTVDKHEDIIGRDYGK 636
Query: 61 S----------------------TCNVIKRNKSSLDYFVIDRD-NKNFLIDNSFSIVSYD 97
NV +DY +
Sbjct: 637 FTEEGFRHPFHLQSSYDSIGELPYTNVSPTFTDVIDYIWYSTPSLSVKGVLGQVDPDYSK 696
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFEKGN 124
S H PL + F+K +
Sbjct: 697 NIIGFPNADFPSDHIPLLSTFMFKKSS 723
>gi|301156521|emb|CBW15992.1| unnamed protein product [Haemophilus parainfluenzae T3T1]
Length = 263
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 11/110 (10%), Positives = 40/110 (36%), Gaps = 2/110 (1%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
++ ++ ++ ++ GDFN ++I D + Q E++ + +++
Sbjct: 156 RYIVERSQSANLKILMGDFNT--DAISDQKAYQQIKSLGLFDTFEMAEQKDSGITVEKAI 213
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++ ++ + ++S + +S H + ++
Sbjct: 214 DGWKGHSQEKRLDYIFLNQAKRVLSNQVIFNGKNKPIVSDHFGVEVDLIL 263
>gi|297680661|ref|XP_002818101.1| PREDICTED: endonuclease/exonuclease/phosphatase family
domain-containing protein 1-like isoform 1 [Pongo
abelii]
gi|297680663|ref|XP_002818102.1| PREDICTED: endonuclease/exonuclease/phosphatase family
domain-containing protein 1-like isoform 2 [Pongo
abelii]
Length = 569
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 14/113 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ +K +I GDF + +S + + + P +
Sbjct: 433 LQETLKGEKDVIILGDFGQGPDSNDYDILRKEKFHHLIPAHTFTNISTKNPQGSKS---- 488
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEY 118
LD I + K + + + D + S HCP+ E
Sbjct: 489 ---LDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEL 538
>gi|255014323|ref|ZP_05286449.1| hypothetical protein B2_10460 [Bacteroides sp. 2_1_7]
Length = 245
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 20/103 (19%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+ P +I GDFN S + I+ R + LDY
Sbjct: 163 EYDKPIIITGDFNMTPGSNEFEAMKSKWQLLSDPSIK--------TYPADRPRLRLDYIY 214
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
D ++ + S H PL I+ +F
Sbjct: 215 GDM------------KKNFKVTKDVVVDVMSSDHLPLYIDVEF 245
>gi|260641834|ref|ZP_05413661.2| Ser/Thr protein phosphatase family protein [Bacteroides finegoldii
DSM 17565]
gi|260624593|gb|EEX47464.1| Ser/Thr protein phosphatase family protein [Bacteroides finegoldii
DSM 17565]
Length = 611
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 20/116 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ E +K + K P +AGD N + S + K + ++ +
Sbjct: 153 KSLEVVKSFVAPYKK---PLFLAGDMNAEPESD------FIKELQKNFQMLSNPKQSTYP 203
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S + S S H P+ +E
Sbjct: 204 ASDPK-----------ETIDYITALKSNANGFALISSQVLDEPMASDHRPILVELR 248
>gi|114612832|ref|XP_527721.2| PREDICTED: similar to KIAA1706 protein isoform 4 [Pan troglodytes]
gi|114612836|ref|XP_001169584.1| PREDICTED: similar to KIAA1706 protein isoform 3 [Pan troglodytes]
Length = 569
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 14/113 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ +K +I GDF + +S + + + P +
Sbjct: 433 LQETLKGEKDVIILGDFGQGPDSNDYDILRKEKFHHLIPAHTFTNISTKNPQGSKS---- 488
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEY 118
LD I + K + + + D + S HCP+ E
Sbjct: 489 ---LDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEL 538
>gi|109066841|ref|XP_001103689.1| PREDICTED: endonuclease/exonuclease/phosphatase family
domain-containing protein 1-like isoform 1 [Macaca
mulatta]
Length = 569
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 32/113 (28%), Gaps = 14/113 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ +K +I GDF + +S + + + P +
Sbjct: 433 LQETLKGEKDVIILGDFGQGPDSNDYDILRKEKFHHLIPAHTFTNISTKNPQGSKS---- 488
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEY 118
LD I + K + + + D + S HCP+ E
Sbjct: 489 ---LDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEL 538
>gi|91776730|ref|YP_546486.1| endonuclease/exonuclease/phosphatase [Methylobacillus flagellatus
KT]
gi|91710717|gb|ABE50645.1| Endonuclease/exonuclease/phosphatase [Methylobacillus flagellatus
KT]
Length = 251
Score = 38.3 bits (87), Expect = 0.37, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 13/117 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L+K ++ + P VIAGDFN + GL ++ E S
Sbjct: 146 RKQIAILRKQIEEVVPKDAPLVIAGDFND-------WSMSAGRELVHGLHLQEVFEHHSG 198
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S + + V + + + K+S H LT
Sbjct: 199 GKPARSFPSF----LPLFRLDRIYVRGF--HVRHVEVHAGPQFMKVSDHAALTAVLS 249
>gi|326504664|dbj|BAK06623.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 564
Score = 38.3 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 8/74 (10%), Positives = 16/74 (21%)
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
F + + R + R + + +Q
Sbjct: 446 FGRVFAGWKEGRIYFPPTYKYSYNSDRYAGDDMHPNEKRRTPAWCDRILWYGRGLNQLCY 505
Query: 102 DTRRSKLSTHCPLT 115
S+ S H P+
Sbjct: 506 VRGESRFSDHRPVY 519
>gi|301623846|ref|XP_002941224.1| PREDICTED: vomeronasal type-2 receptor 26-like [Xenopus (Silurana)
tropicalis]
Length = 956
Score = 38.3 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 14/112 (12%), Positives = 31/112 (27%), Gaps = 17/112 (15%)
Query: 23 FVIAGDFNRKIN-----SIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF- 76
+ GDFN +N S + ++++ + + ++ N DY
Sbjct: 520 ILTGGDFNLALNPLVDSSKKKFNVSYKRLKQAKMHLHKLHLIDA---WRYMNPKLRDYTY 576
Query: 77 -----VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
I+ + + + S H P+ E+
Sbjct: 577 HSKPFNCYNRIDYTFINQEWLHL---INKAKIGTPLFSDHAPVITEFTIPNS 625
>gi|290999631|ref|XP_002682383.1| predicted protein [Naegleria gruberi]
gi|284096010|gb|EFC49639.1| predicted protein [Naegleria gruberi]
Length = 314
Score = 38.3 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 5/105 (4%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
++ I + IP++++GDFN + + ++D ++ D ++ + + + K
Sbjct: 210 NRIINSNIPWLLSGDFNAGCSYVKESDWKGIRLRTDSTFKWLIKDDQG---TMVKTKCPY 266
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
D FVI + Y +S H P+ +
Sbjct: 267 DRFVIAGSIDYEKVQVVNFKEEYG--LTQALAEAVSDHFPIRMTI 309
>gi|262166317|ref|ZP_06034054.1| hypothetical protein VMA_002771 [Vibrio mimicus VM223]
gi|262026033|gb|EEY44701.1| hypothetical protein VMA_002771 [Vibrio mimicus VM223]
Length = 281
Score = 38.3 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 30/119 (25%), Gaps = 23/119 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L D+ P ++AGDFN + + GL + T
Sbjct: 185 QEQIAAL---LDELRSFAGPVIVAGDFNSWSEARM--ALLSAALTDIGLQAVVFESDNRT 239
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N LD+ S H PL + +
Sbjct: 240 TFI---NGLPLDHVFYRGLILKKAEAPQSD---------------ASDHNPLLVSFRLP 280
>gi|297726527|ref|NP_001175627.1| Os08g0476600 [Oryza sativa Japonica Group]
gi|255678528|dbj|BAH94355.1| Os08g0476600 [Oryza sativa Japonica Group]
Length = 1589
Score = 38.3 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 30/125 (24%), Gaps = 19/125 (15%)
Query: 5 QGEWLKKWADQK----IKTGIPFVIAGDFNRKINSIGD--------TDDFWQKMDPDGLL 52
Q + + + K P ++ GDFN + + L
Sbjct: 893 QLDQKRAFLASLAHVCQKNKGPILLGGDFNIIRKESEKNKKGGYNRWSFIFNVIIDQSNL 952
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + + ++ + Y + + S H
Sbjct: 953 RELEMNGRKFTWSNS-------QKNVTHEKLDRILVSIDREHKYPMAVVRNLEKVFSDHV 1005
Query: 113 PLTIE 117
PL ++
Sbjct: 1006 PLLVD 1010
>gi|251792134|ref|YP_003006854.1| metal-dependent hydrolase [Aggregatibacter aphrophilus NJ8700]
gi|247533521|gb|ACS96767.1| metal-dependent hydrolase [Aggregatibacter aphrophilus NJ8700]
Length = 263
Score = 38.3 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 40/116 (34%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + ++ ++ + ++ GDFN S + + + L E++ +
Sbjct: 151 QLDNIRNIVERSQSRNLK-ILMGDFNTDAISDP--NAYQKIKSLGLLDTFEMAEQKDSGI 207
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+++ ++ ++ + ++S + +S H L +E
Sbjct: 208 TVEKAIDGWKGHSEEKRLDYIFLNQAKRVLSSQVVFNGKNKPVVSDHFGLEVELTL 263
>gi|56752781|gb|AAW24602.1| SJCHGC02357 protein [Schistosoma japonicum]
Length = 339
Score = 38.3 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 16/149 (10%), Positives = 35/149 (23%), Gaps = 29/149 (19%)
Query: 1 MLSQQGEWLKKWADQKIKT------------GIPFVIAGDFNRKINSIGDTDDFWQKMDP 48
+ +QG+ L + I+ P I GDFN +
Sbjct: 187 IRKKQGQKLINYLSSFIERICSTGLSVNSNVFPPIFICGDFNADPTEPVINLLQNFSFNS 246
Query: 49 DGLLIRFP-------QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ L ++ R + +++ + +
Sbjct: 247 NTLYKLTSAYYVAEGCKEPEFTTWKIRKSKRITNLTEICHTVDYIWYCNQLCTLLGVWSI 306
Query: 102 DTRRS----------KLSTHCPLTIEYDF 120
++R S H L ++
Sbjct: 307 PSKREIGPSGLPSAIFPSDHMNLIADFSL 335
>gi|270339913|ref|ZP_06006433.2| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270333322|gb|EFA44108.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 262
Score = 38.3 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 30/116 (25%), Gaps = 23/116 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q +++ ++ + P +I GDFN T
Sbjct: 165 QAKYINQYFAR---CPYPVIIGGDFNAAPTEECIKQTMKASWANLTNDELTFHTSNPTIK 221
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + R + + ++ +I S LS H P+
Sbjct: 222 IDY---------LFGRPMNGWTVVDTQTIHSC-----------LSDHRPILSVIQL 257
>gi|225682536|gb|EEH20820.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Paracoccidioides brasiliensis Pb03]
Length = 607
Score = 38.3 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 28/125 (22%), Gaps = 25/125 (20%)
Query: 22 PFVIAGDFNRKINS---------------IGDTDDFWQKMDPDGLLIRFPQEKES----- 61
P +I GDFN S + + G+ F +
Sbjct: 456 PLIICGDFNSYPGSAVYELMNRGHLIEDHPDLEKRLYGNLSRLGMSYPFNLKSAYGAIGE 515
Query: 62 --TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCPLTIE 117
N +DY ++ Y S H + E
Sbjct: 516 LEFTNYTPDFADVIDYIWYTSNSLQVTGLLGEVDREYLQRVPGFPNY-HFPSDHLAIMAE 574
Query: 118 YDFEK 122
+ F+
Sbjct: 575 FSFKS 579
>gi|260786407|ref|XP_002588249.1| hypothetical protein BRAFLDRAFT_86696 [Branchiostoma floridae]
gi|229273409|gb|EEN44260.1| hypothetical protein BRAFLDRAFT_86696 [Branchiostoma floridae]
Length = 754
Score = 38.3 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 35/124 (28%), Gaps = 19/124 (15%)
Query: 15 QKIKTGIPFVIAGDFNRKIN----------SIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+K + + GDFN + + W ++ L
Sbjct: 536 RKYENEGEVIFVGDFNADLGKQGGPRGRGQPSKLGKELWGTLNELDLFSLNLSHLCKGPL 595
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY-----D 119
+++ D + D+ S VS + LS H P+ + +
Sbjct: 596 --HTFQANGDKHLSTIDHILIPYSLSTEAVSCKVIGDCSLN--LSDHSPIVASFVNKPNE 651
Query: 120 FEKG 123
FE+
Sbjct: 652 FEEA 655
>gi|27367041|ref|NP_762568.1| putative phospholipase C [Vibrio vulnificus CMCP6]
gi|27358609|gb|AAO07558.1| Putative phospholipase C [Vibrio vulnificus CMCP6]
Length = 442
Score = 38.3 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 11/124 (8%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ A I V +GDFN D + E
Sbjct: 314 QRQFKQMRALAQSLKIPANETVVYSGDFNVNKRKFPSDYQQMIANLSAIEPHYSGYTEST 373
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS---------IVSYDQSDLDTRRSKLSTH 111
+ L ++ N ++ + ++ + LS H
Sbjct: 374 FDPRINNFAGEPLSGGENVEYLDYVMVSNEYAVKGDNNNHVDIPRSTAESLWKHYNLSDH 433
Query: 112 CPLT 115
P++
Sbjct: 434 FPVS 437
>gi|206558938|ref|YP_002229698.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
cenocepacia J2315]
gi|198034975|emb|CAR50847.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
cenocepacia J2315]
Length = 271
Score = 38.3 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 29/118 (24%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W + P V+AGDFN N + ++ + + +
Sbjct: 170 RQMHWIAHWIV-RNAGDDPLVLAGDFNDWRNDSV---ALFGEIGLSEVATLLGESGRTFP 225
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + LS H P +
Sbjct: 226 AFSPALALDKMFVRGLTPLEWRAPSGE--------------AAWLSDHLPYIARLRLD 269
>gi|220929233|ref|YP_002506142.1| endonuclease/exonuclease/phosphatase [Clostridium cellulolyticum
H10]
gi|219999561|gb|ACL76162.1| Endonuclease/exonuclease/phosphatase [Clostridium cellulolyticum
H10]
Length = 366
Score = 38.3 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 30/112 (26%), Gaps = 13/112 (11%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ +AGDFN D +D S
Sbjct: 261 RDLRNEKSDYFVAGDFNSTKAMGVMDDLLKDHIDGVRYSNDILP------------LSYQ 308
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
Y ++ + + + + KLS H P+ + D +K N+
Sbjct: 309 LYGFKLWRIDFAILPKANDNIRFKTYKTISPD-KLSDHDPIVLSLDVKKSNL 359
>gi|108706689|gb|ABF94484.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1046
Score = 38.3 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 7/115 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIG-DTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + LK + P+++ GDFN + G + ++ + E +
Sbjct: 51 RQIKRLK------LADREPWLLFGDFNMIYRACGKNNNNLNLRRMSRFRAALEHCELKEV 104
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+R S D + N + + L S S HCPL +
Sbjct: 105 HLQNRRFTWSNDRRKPTLVRLDRFFCNENWDLGFGHHILHALSSGTSDHCPLLLT 159
>gi|330503362|ref|YP_004380231.1| endonuclease/exonuclease/phosphatase [Pseudomonas mendocina NK-01]
gi|328917648|gb|AEB58479.1| endonuclease/exonuclease/phosphatase [Pseudomonas mendocina NK-01]
Length = 262
Score = 38.3 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 30/118 (25%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ L + P ++AGDFN + L + +
Sbjct: 161 RQQIGLLLDLL-ATFEPDAPVIVAGDFND-------WRLRADQQLAPHGLREAFEHRHG- 211
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ S + N+ + S S LS H PL E
Sbjct: 212 -----KPARSFPARMPWLRLDRIYTRNASAHEPQVLSTRPW--SHLSDHAPLAAEIHL 262
>gi|241351001|ref|XP_002408709.1| hypothetical protein IscW_ISCW004910 [Ixodes scapularis]
gi|215497383|gb|EEC06877.1| hypothetical protein IscW_ISCW004910 [Ixodes scapularis]
Length = 488
Score = 38.3 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 13/109 (11%), Positives = 33/109 (30%), Gaps = 7/109 (6%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
W ++ ++ ++AGDFN + + G D + + + + + R
Sbjct: 340 ADWINRLVEPKRHTILAGDFNARRTAWGYPDKNARGKNIKKACENSNLQLCNNPDTPTRL 399
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ ++ D + + S H P+ +
Sbjct: 400 AQNTNHNDTSPDLAWTSPKL-------RIKWQVLQDAMGSDHLPIRTDL 441
>gi|146421647|ref|XP_001486768.1| hypothetical protein PGUG_00145 [Meyerozyma guilliermondii ATCC
6260]
Length = 497
Score = 38.3 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 28/122 (22%), Gaps = 22/122 (18%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P + GD N + N Q + L F + S V L + D
Sbjct: 370 PSFLCGDLNTEPNEKAYQIITEQFRNLAKLTTAFNKYGHSKSTVTGFEGEVLLNGGQNID 429
Query: 82 NKNFL----------------------IDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S+ +S H P+ ++
Sbjct: 430 YIFAPSYTAKLGETVLCDKLTTSPPSERYLDLRLKSFGMLHSKFNGLYMSDHRPIVADFT 489
Query: 120 FE 121
+
Sbjct: 490 LK 491
>gi|326522610|dbj|BAK07767.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 608
Score = 38.3 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 37/140 (26%), Gaps = 26/140 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPD-------------GLLIRF 55
+ +KI + GD N + Q G + +
Sbjct: 439 QRIPEKIIDHDRIIWLGDLNYRVALTYDETRALLEQNDWDTLLENDQLMIERQAGRVFKG 498
Query: 56 PQEKESTCNVIKRNKSSLD-------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+E + + K + D R ++ + +Q +
Sbjct: 499 WKEGKIYFAPTYKYKLNSDTYAGETTKSKRKRRTPSWCDRILWHGKGIEQLQYIRGEHRF 558
Query: 109 STHCPL----TIEYDFEKGN 124
S H P+ +E D + G+
Sbjct: 559 SDHRPVCSVFVVEADVDNGS 578
>gi|269127384|ref|YP_003300754.1| endonuclease/exonuclease/phosphatase [Thermomonospora curvata DSM
43183]
gi|268312342|gb|ACY98716.1| Endonuclease/exonuclease/phosphatase [Thermomonospora curvata DSM
43183]
Length = 466
Score = 38.3 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 9/125 (7%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-DDFWQKMDPDGLLIRFPQEKESTCNV 65
+ L + + +G V+ GD N + G+ F + + +
Sbjct: 199 DQLTAFIQKH-SSGNAVVVMGDTNTRYTRTGERIRQFAAANGLTDVWVSLIRGGTPPPEG 257
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNS----FSIVSYDQSD---LDTRRSKLSTHCPLTIEY 118
L S + V Y LD +LS H P+ ++
Sbjct: 258 GPAPACDTATVDNCEVVDKILFRGSKFLKLNAVRYRNERAAFLDEAGERLSDHDPIAADF 317
Query: 119 DFEKG 123
++
Sbjct: 318 TWKAS 322
>gi|229137476|ref|ZP_04266087.1| Sphingomyelinase C [Bacillus cereus BDRD-ST26]
gi|228646034|gb|EEL02257.1| Sphingomyelinase C [Bacillus cereus BDRD-ST26]
Length = 338
Score = 38.3 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 203 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 262
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 263 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFVENKVLQPKSPQWTVTSWLKKYTY 322
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 323 DDY-SDHYPVAATISMK 338
>gi|329724164|gb|EGG60682.1| sphingomyelin phosphodiesterase [Staphylococcus epidermidis VCU144]
gi|329735747|gb|EGG72028.1| sphingomyelin phosphodiesterase [Staphylococcus epidermidis VCU028]
Length = 327
Score = 38.3 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 29/129 (22%), Gaps = 14/129 (10%)
Query: 1 MLSQQGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK---MDPDGLLIRFP 56
+ Q +K++ D+ I P I GD N +S + +
Sbjct: 193 IRQSQMSEIKQFIKDKNIPKNEPVYIGGDLNVIKDSDEYQQMANNLNVSLPTQFDGNAYS 252
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------- 108
+ S + S + K
Sbjct: 253 WDTSSNSIAKYNYPKLEPQHLDYILLDRDHAQPSSWHNDTHRVKSPEWSVKSWGKTYKYN 312
Query: 109 --STHCPLT 115
S H PL+
Sbjct: 313 DYSDHYPLS 321
>gi|306843285|ref|ZP_07475893.1| Endonuclease/exonuclease/phosphatase family protein [Brucella sp.
BO2]
gi|306286516|gb|EFM58102.1| Endonuclease/exonuclease/phosphatase family protein [Brucella sp.
BO2]
Length = 369
Score = 38.3 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 14/158 (8%), Positives = 37/158 (23%), Gaps = 42/158 (26%)
Query: 5 QGEWLKKWADQKIK----TGIPFVIAGDFNRKINSI----GDTD------------DFWQ 44
+ +++ ++K ++I GDFN I + +
Sbjct: 211 EARAIRRIIEEKFGIDRVAERRWLICGDFNDYRERILIGGDEWNGYEFTPVMEEESALNV 270
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY-------- 96
+ + + + + L+ + D +
Sbjct: 271 LLGDGFAVNLVERRPVMDRWTLYHTRGPLERHLCQLDYIMASPAFAAKNEHAVPDIIRRG 330
Query: 97 -----------DQSDLDTRRS---KLSTHCPLTIEYDF 120
+ K S HCP+++ +
Sbjct: 331 QPWRTIFPPEQNVDRYPRTGWDRPKASDHCPVSVTLNM 368
>gi|303241208|ref|ZP_07327715.1| Endonuclease/exonuclease/phosphatase [Acetivibrio cellulolyticus
CD2]
gi|302591219|gb|EFL60960.1| Endonuclease/exonuclease/phosphatase [Acetivibrio cellulolyticus
CD2]
Length = 648
Score = 38.3 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 38/137 (27%), Gaps = 16/137 (11%)
Query: 3 SQQGEWLKKWADQKI-KTGIPFVIAGDFNR----------KINSIG---DTDDFWQKMDP 48
+ + + P +I GD N ++ +
Sbjct: 159 KDSMSLILERIREHFNDANEPVIICGDLNVFDTSSSDIYNIPKDDDAIAVYNNTIGQALE 218
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLI-DNSFSIVSYDQSDLDTRRSK 107
G + ++ + S+L L+ + S + ++ + S
Sbjct: 219 AGFKKGYQPTRDDITYHAWDDPSNLPSDKSWGIFDYILVRNGSSTFGDHEIINFKNADSI 278
Query: 108 L-STHCPLTIEYDFEKG 123
S H + ++ D+ +G
Sbjct: 279 PASDHKGVHLQLDYSEG 295
>gi|293392720|ref|ZP_06637039.1| endonuclease/exonuclease/phosphatase [Serratia odorifera DSM 4582]
gi|291424837|gb|EFE98047.1| endonuclease/exonuclease/phosphatase [Serratia odorifera DSM 4582]
Length = 257
Score = 38.3 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 21/110 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q P ++AGDFN ++++ +E R K+
Sbjct: 165 EQIANHHGPVIMAGDFNA---------WSRKRINALYQFASDMALREVNFTDDHRRKAFG 215
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+++ S + + S H PL +E+ +
Sbjct: 216 RPLDFVFYRNLGVVEASVLVT------------QASDHNPLLVEFHPDSA 253
>gi|289540945|gb|ADD09615.1| bristled-like protein [Trifolium repens]
Length = 582
Score = 38.3 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 28/131 (21%), Gaps = 22/131 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKIN----------SIGDTDDFW------------QKMDP 48
+ A +KI + GD N ++ D D +
Sbjct: 414 RRAPEKIVDHDRIIWLGDLNYRVALSYEETRLLLEDNDWDTLLEKDQLNIERDAGRVFSG 473
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ R + + S +Q S+
Sbjct: 474 FKEGRIVFAPTYKYSHNSDSYAGETVKSKKKRRTPAWCDRILWRGRSIEQLSYIRGESRF 533
Query: 109 STHCPLTIEYD 119
S H P+ +
Sbjct: 534 SDHRPVCAVFS 544
>gi|262274349|ref|ZP_06052160.1| hypothetical protein VHA_001324 [Grimontia hollisae CIP 101886]
gi|262220912|gb|EEY72226.1| hypothetical protein VHA_001324 [Grimontia hollisae CIP 101886]
Length = 361
Score = 38.3 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 29/122 (23%), Gaps = 18/122 (14%)
Query: 17 IKTGIPFVIAGDFNRKI-NSIGDTDDFWQKMD-----------PDGLLIRFPQEKESTCN 64
+ PFV+ GD N N GD + Q +D
Sbjct: 239 LTPSQPFVVMGDLNADPVNGDGDHNAIRQLLDDAKIQDVKPESDGAEAALLHAHTRRKRQ 298
Query: 65 VIKRNKSSLDYFVIDRDNK------NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
LDY + + ++ + S S H + ++
Sbjct: 299 ATHHRGLRLDYVLPSIHFNVLDAGVFWPNPDNLLGHLIHNHKGNAVASHSSDHRLVWVDL 358
Query: 119 DF 120
Sbjct: 359 QL 360
>gi|92429658|gb|ABE77191.1| putative non-LTR retroelement reverse transcriptase [Sorghum
bicolor]
Length = 1505
Score = 38.3 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNR----KINSIGDTDDFWQKMDPDGLLIRFPQ 57
L + ++L + A+ K +P++I GDFN + S GD D W + + +
Sbjct: 700 LQHKRDFLVEMANTCSKESLPYIIGGDFNIMRCPEDKSNGDFDPKWPDLFNAIIESLDLK 759
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
E + + L+ + I+ + S ++ R +S H PL +
Sbjct: 760 EINMVG--RQYTWAGPGDNPTLEKLDRVLVSTEWEIM-FPLSTVEPRDGNISDHTPLVL 815
>gi|90023311|ref|YP_529138.1| histidine kinase [Saccharophagus degradans 2-40]
gi|89952911|gb|ABD82926.1| histidine kinase [Saccharophagus degradans 2-40]
Length = 261
Score = 38.3 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 10/132 (7%), Positives = 32/132 (24%), Gaps = 27/132 (20%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDG 50
+ + + ++ G++N + ++++
Sbjct: 131 QALLHKITRKRRNYIFCGNWNMAHTRKDVENWARNEDQSGFLGHEQQWMNQLFRQLGYAD 190
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-S 109
+ S + +I ++K S
Sbjct: 191 AFRLAVPDAGEYSWW----PSGEVGVADGWRVDHQVISEGLIK---KVEYAAMYKTKTFS 243
Query: 110 THCPLTIEYDFE 121
+H P+ ++YD +
Sbjct: 244 SHLPVIVDYDID 255
>gi|134297228|ref|YP_001120963.1| endonuclease/exonuclease/phosphatase [Burkholderia vietnamiensis
G4]
gi|134140385|gb|ABO56128.1| Endonuclease/exonuclease/phosphatase [Burkholderia vietnamiensis
G4]
Length = 271
Score = 38.3 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 29/118 (24%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W + P V+AGDFN N + ++ + + +
Sbjct: 170 RQMHWIAHWIV-RNAGDDPLVLAGDFNDWRNDSV---ALFGEIGLSEVATLLGESGRTFP 225
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + LS H P +
Sbjct: 226 AFSPALALDKMFVRGLTPLEWQAPSGE--------------TAWLSDHLPYIARLRLD 269
>gi|330841059|ref|XP_003292522.1| hypothetical protein DICPUDRAFT_50499 [Dictyostelium purpureum]
gi|325077218|gb|EGC30945.1| hypothetical protein DICPUDRAFT_50499 [Dictyostelium purpureum]
Length = 547
Score = 38.3 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 1/88 (1%)
Query: 9 LKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
L+K+ D K+ IP +I GDFN +S M D + + +
Sbjct: 395 LRKFIKDNKLDINIPIIICGDFNSSPDSSVYQYLTTGSMSNDDPNLTNSGQYPTASFSNT 454
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVS 95
++ D + S +
Sbjct: 455 DTDNNSDESNDINSISHPFKLTSAYGLR 482
>gi|316977461|gb|EFV60557.1| DNA-(apurinic or apyrimidinic site) lyase 2 [Trichinella spiralis]
Length = 462
Score = 38.3 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 28/126 (22%), Gaps = 26/126 (20%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP---------------------DGLLIR 54
+ +G +I GD N I D + L
Sbjct: 167 LLNSGNYVLILGDMNLCHKRIDHCDPDQEFDTDEARIWLCEFLYDTDKNADGKMVDLYRI 226
Query: 55 FPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
K + ++ + F D +D + S HCP
Sbjct: 227 HYPNKGRMFTCWNSQKRARILNFGTRIDYILANVDLIDRCSCCEILSSIQG----SDHCP 282
Query: 114 LTIEYD 119
+ E
Sbjct: 283 VMAELS 288
>gi|306832641|ref|ZP_07465780.1| RgfB protein [Streptococcus bovis ATCC 700338]
gi|304425249|gb|EFM28376.1| RgfB protein [Streptococcus bovis ATCC 700338]
Length = 276
Score = 38.3 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 14/106 (13%), Positives = 30/106 (28%), Gaps = 2/106 (1%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ + P V+ GDFN D + ++ + +I+
Sbjct: 173 ALLDSPKPLVLMGDFN-NPTDTAGYDMILNSPLDLQDSHKVAKKVQGDHTIIEDIDGWEG 231
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ I+S + +S H L +E ++
Sbjct: 232 NK-QSLKVDHVFTSKGIDILSSTVTFDGGEAPIVSDHFGLAVELNY 276
>gi|297199538|ref|ZP_06916935.1| predicted protein [Streptomyces sviceus ATCC 29083]
gi|297147430|gb|EFH28625.1| predicted protein [Streptomyces sviceus ATCC 29083]
Length = 371
Score = 38.3 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 32/124 (25%), Gaps = 11/124 (8%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--QEKEST 62
Q + + ++ ++AGD N +S + +
Sbjct: 251 QARRVAEIYRAALERTPHVIVAGDLNDFPSSDSVATLEGAGLRDAMSHRSYRGLPGTFKP 310
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR------SKLSTHCPLTI 116
C + +DY ++ + + + + S H L +
Sbjct: 311 CQSERDK---IDYLLMSPEVWQEVQHVGLETRGICADGIKSFDTVTSPIDAASDHAALYM 367
Query: 117 EYDF 120
+ D
Sbjct: 368 DVDL 371
>gi|242243247|ref|ZP_04797692.1| Sphingomyelin phosphodiesterase [Staphylococcus epidermidis W23144]
gi|242233196|gb|EES35508.1| Sphingomyelin phosphodiesterase [Staphylococcus epidermidis W23144]
Length = 334
Score = 38.3 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 29/129 (22%), Gaps = 14/129 (10%)
Query: 1 MLSQQGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK---MDPDGLLIRFP 56
+ Q +K++ D+ I P I GD N +S + +
Sbjct: 200 IRQSQMSEIKQFIKDKNIPKNEPVYIGGDLNVIKDSDEYEQMANNLNVSLPTQFDGNAYS 259
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------- 108
+ S + S + K
Sbjct: 260 WDTSSNSIAKYNYPKLEPQHLDYILLDRDHAQPSSWHNDTHRVKSPEWSVKSWGKTYKYN 319
Query: 109 --STHCPLT 115
S H PL+
Sbjct: 320 DYSDHYPLS 328
>gi|111226576|ref|XP_640688.2| hypothetical protein DDB_G0281455 [Dictyostelium discoideum AX4]
gi|90970656|gb|EAL66709.2| hypothetical protein DDB_G0281455 [Dictyostelium discoideum AX4]
Length = 1097
Score = 38.3 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN + +K+ + E R+ LD
Sbjct: 86 IIAGDFNNNHDCNSFFGTELRKIIDQDM--LLDTGIEENTPTFPRSMKRLDRIYCHPTLL 143
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N +++ S H P+TI
Sbjct: 144 NQNSKLVVHNTVFNK----------SDHFPITITIQ 169
>gi|77735773|ref|NP_001029581.1| endonuclease/exonuclease/phosphatase family domain-containing
protein 1 [Bos taurus]
gi|122145064|sp|Q3MHJ7|EEPD1_BOVIN RecName: Full=Endonuclease/exonuclease/phosphatase family
domain-containing protein 1
gi|75948260|gb|AAI05213.1| Endonuclease/exonuclease/phosphatase family domain containing 1
[Bos taurus]
gi|296488465|gb|DAA30578.1| endonuclease/exonuclease/phosphatase family domain-containing
protein 1 [Bos taurus]
Length = 571
Score = 38.3 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 14/113 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ +K ++ GDF + +S + + N+ +N
Sbjct: 435 LQETLKGEKDVIVLGDFGQGPDSSDYD------ILRKEKFHHLIPAH-TFTNISTKNPQG 487
Query: 73 L---DYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEY 118
D I + K + + + D + S HCP+ E+
Sbjct: 488 SKALDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEF 540
>gi|325969943|ref|YP_004246134.1| endonuclease/exonuclease/phosphatase [Spirochaeta sp. Buddy]
gi|324025181|gb|ADY11940.1| Endonuclease/exonuclease/phosphatase [Spirochaeta sp. Buddy]
Length = 246
Score = 38.3 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 14/116 (12%), Positives = 26/116 (22%), Gaps = 12/116 (10%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + L +I GDFN ++ + +
Sbjct: 140 RAAKALNSLIG-----DDDAIICGDFNDPVHPARIFSQEAGF--TEVFTALGLCAPVTFP 192
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N+ L ++ + V LS H P+ D
Sbjct: 193 CPYLSNEGFL-----VEAIDKIMLRGNIKPVLATSPQYTIVGGVLSDHWPVAAVLD 243
>gi|282874729|ref|ZP_06283608.1| sphingomyelin phosphodiesterase [Staphylococcus epidermidis SK135]
gi|281296445|gb|EFA88960.1| sphingomyelin phosphodiesterase [Staphylococcus epidermidis SK135]
Length = 327
Score = 38.3 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 29/129 (22%), Gaps = 14/129 (10%)
Query: 1 MLSQQGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK---MDPDGLLIRFP 56
+ Q +K++ D+ I P I GD N +S + +
Sbjct: 193 IRQSQMSEIKQFIKDKNIPKNEPVYIGGDLNVIKDSDEYQQMANNLNVSLPTQFDGNAYS 252
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------- 108
+ S + S + K
Sbjct: 253 WDTSSNSIAKYNYPKLEPQHLDYILLDRDHAQPSSWHNDTHRVKSPEWSVKSWGKTYKYN 312
Query: 109 --STHCPLT 115
S H PL+
Sbjct: 313 DYSDHYPLS 321
>gi|226469330|emb|CAX70144.1| Nocturnin [Schistosoma japonicum]
Length = 339
Score = 38.3 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 16/149 (10%), Positives = 35/149 (23%), Gaps = 29/149 (19%)
Query: 1 MLSQQGEWLKKWADQKIKT------------GIPFVIAGDFNRKINSIGDTDDFWQKMDP 48
+ +QG+ L + I+ P I GDFN +
Sbjct: 187 IRKKQGQKLINYLSSFIERICSTGLSVNSNVFPPIFICGDFNADPTEPVINLLQNFSFNS 246
Query: 49 DGLLIRFP-------QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
+ L ++ R + +++ + +
Sbjct: 247 NTLYKLTSAYYVAEGCKEPEFTTWKIRKSKRITNLTEICHTVDYIWYCNQLCTLLGVWSI 306
Query: 102 DTRRS----------KLSTHCPLTIEYDF 120
++R S H L ++
Sbjct: 307 PSKREIGPSGLPSAIFPSDHMNLIADFSL 335
>gi|255713086|ref|XP_002552825.1| KLTH0D02310p [Lachancea thermotolerans]
gi|238934205|emb|CAR22387.1| KLTH0D02310p [Lachancea thermotolerans]
Length = 739
Score = 38.3 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 26/157 (16%), Positives = 44/157 (28%), Gaps = 43/157 (27%)
Query: 5 QGEWLKKWADQKIKTGI-----------PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI 53
Q L + ++ IK P VI GDFN + NS ++ ++ +
Sbjct: 582 QVGVLLDYMEKVIKEQNNCNNTQELKKVPVVICGDFNSQTNS-----AVYELLNTGNVSK 636
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--------- 104
E + ++N + D+ L + + D D
Sbjct: 637 HRDIEGRDFGYMSQKNYAHNLPLKSSYDSIGELPFTNLTPTFTDVIDYIWYSSQGLRVRG 696
Query: 105 ------------------RSKLSTHCPLTIEYDFEKG 123
S H PL ++F KG
Sbjct: 697 LLGEIDPEYASKFIGFPNDKFPSDHIPLITRFEFTKG 733
>gi|302345268|ref|YP_003813621.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
melaninogenica ATCC 25845]
gi|302149592|gb|ADK95854.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
melaninogenica ATCC 25845]
Length = 324
Score = 38.3 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 38/131 (29%), Gaps = 17/131 (12%)
Query: 6 GEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
E L+ D ++ GDFN +S + + + +
Sbjct: 195 MERLRSAIDSLRSAYTDPKLLVMGDFNDYADSPSLQLAYEYGLINISAGVHGRNGAK-GT 253
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKL-------------S 109
SLD ++ + ++++ D + + + D K S
Sbjct: 254 YRYHGEWGSLDQILVSVNLRSWVTDCRINDAPFLLEEDTKYGGVKPRRNYNGMRFNNGFS 313
Query: 110 THCPLTIEYDF 120
H PL + +
Sbjct: 314 DHLPLVLRLQY 324
>gi|225680794|gb|EEH19078.1| synaptojanin-1 [Paracoccidioides brasiliensis Pb03]
Length = 1237
Score = 38.3 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 17/125 (13%)
Query: 14 DQKIKTGIPFVIAGDFNR----------------KINSIGDTDDFWQKMDPDGLLIRFPQ 57
++ I+ + GDFN + S+ + D +M + +
Sbjct: 787 NRSIEDHDAIIWLGDFNYRIGLPNDRVRGLIKDGDLESLYENDQLNLQMVAGLTFPFYSE 846
Query: 58 EKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + N + L + + + Q + + K S H P+
Sbjct: 847 ARITFPPTYKYDNGTDLYDTSEKARIPAWCDRVLWKGGNLRQLEYNAASLKFSDHRPVHA 906
Query: 117 EYDFE 121
+D E
Sbjct: 907 TFDCE 911
>gi|301309757|ref|ZP_07215696.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
gi|300831331|gb|EFK61962.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
Length = 628
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 31/121 (25%), Gaps = 27/121 (22%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L ++ P IAGD+N F ++ D +
Sbjct: 173 ILRREA----------ASAHKPLFIAGDWNATA-----HSPFITEISKDFQ---LLSNPK 214
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S LDY F+ +S + S H P+ E
Sbjct: 215 QATFPASTPDSCLDYI-----AGYVKNGQPFTRLSAWVPEEAV----ASDHRPVVTEVRL 265
Query: 121 E 121
+
Sbjct: 266 K 266
>gi|302345504|ref|YP_003813857.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
melaninogenica ATCC 25845]
gi|302149821|gb|ADK96083.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
melaninogenica ATCC 25845]
Length = 258
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 5/88 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + K +Q + G+P ++ GDFN + D + +
Sbjct: 167 RESARLILKRINQ-LSKGLPTILTGDFNVDQTDEIYQIFSNSGVLRDCYTNALQRMTPTG 225
Query: 63 CNV----IKRNKSSLDYFVIDRDNKNFL 86
R+KS +D+ + D K
Sbjct: 226 TWNDFMQDSRSKSRIDHIFVSSDFKYCC 253
>gi|251790113|ref|YP_003004834.1| Endonuclease/exonuclease/phosphatase [Dickeya zeae Ech1591]
gi|247538734|gb|ACT07355.1| Endonuclease/exonuclease/phosphatase [Dickeya zeae Ech1591]
Length = 256
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 29/118 (24%), Gaps = 15/118 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ L D + P V+AGDFN ++ +
Sbjct: 154 RQQLALLCDLLDT-LPADAPLVVAGDFNDWQMKACALLKRRAGLEEVFSQHLGKPARTFP 212
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N+ + + S LS H PL +E
Sbjct: 213 ------------ARFPLLRLDRIYVRNARTSIPRLLPSKPW--SHLSDHAPLAVEIHL 256
>gi|325108441|ref|YP_004269509.1| endonuclease/exonuclease/phosphatase [Planctomyces brasiliensis DSM
5305]
gi|324968709|gb|ADY59487.1| Endonuclease/exonuclease/phosphatase [Planctomyces brasiliensis DSM
5305]
Length = 327
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 28/113 (24%), Gaps = 20/113 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E L Q P +IAGDFN +S +Q ++ +
Sbjct: 232 EQLAAEVQQNQS--QPIIIAGDFNTPRDS-----FLFQPLEGLVRNAFDEVGEGYAPTW- 283
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S S H P+ +E+
Sbjct: 284 -------PVPFPVLTLDQVWGNRGVAFRSCQHDWSKR-----SDHRPVLVEFQ 324
>gi|331243524|ref|XP_003334405.1| CCR4-NOT transcription complex [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309313395|gb|EFP89986.1| CCR4-NOT transcription complex [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 786
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 27/129 (20%), Gaps = 27/129 (20%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV---------------I 66
P +I GDFN S G D Q + P
Sbjct: 658 PTIICGDFNSIPQS-GVYDYLSQGLIPSTHPDFCKNNYGPYTQFGIHHSLKLKSAYSNLD 716
Query: 67 KRNKSSLDY----FVIDRDNKNFLIDNSFSIVSYDQSDL-------DTRRSKLSTHCPLT 115
+ +Y + + D S H P+
Sbjct: 717 SKELPFTNYTPGFKGVIDYIWYSTESLQVIGLLGKIDDAYLKKVVGFPNAHFASDHVPVL 776
Query: 116 IEYDFEKGN 124
E+ + N
Sbjct: 777 AEFKVKPVN 785
>gi|304560004|gb|ADM42668.1| hypothetical protein ETAF_2566 [Edwardsiella tarda FL6-60]
Length = 253
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q P ++AGDFN N ++++ + +E R +
Sbjct: 167 EQIALHKGPVIMAGDFNAWSN---------RRLNALRRFASGMELREVHFTNDHRRTAFG 217
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+++ S + + S H PL +E+
Sbjct: 218 RPLDFVFYRGLGVVEASVLVT------------QASDHNPLLVEFR 251
>gi|229183010|ref|ZP_04310242.1| Sphingomyelinase C [Bacillus cereus BGSC 6E1]
gi|228600467|gb|EEK58055.1| Sphingomyelinase C [Bacillus cereus BGSC 6E1]
Length = 338
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 203 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 262
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 263 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 322
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 323 DDY-SDHYPVEATISMK 338
>gi|222094431|ref|YP_002528490.1| sphingomyelinase c [Bacillus cereus Q1]
gi|221238488|gb|ACM11198.1| sphingomyelinase C [Bacillus cereus Q1]
Length = 338
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 203 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 262
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 263 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFVENKVLQPKSPQWTVTSWLKKYTY 322
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 323 DDY-SDHYPVAATISMK 338
>gi|218901872|ref|YP_002449706.1| sphingomyelin phosphodiesterase C [Bacillus cereus AH820]
gi|218535992|gb|ACK88390.1| sphingomyelin phosphodiesterase C [Bacillus cereus AH820]
Length = 333
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 198 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 317
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDY-SDHYPVEATISMK 333
>gi|294655388|ref|XP_457525.2| DEHA2B13332p [Debaryomyces hansenii CBS767]
gi|199429918|emb|CAG85534.2| DEHA2B13332p [Debaryomyces hansenii]
Length = 1043
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 20/128 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQ 57
+++I+ + GDFN ++ + D ++M F +
Sbjct: 801 NRRIRDHDAVIWLGDFNYRVGLTNEQVRPLIEKKEFSKLFEYDQLNKQMASGESFPFFDE 860
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL----STHCP 113
+ + K + + +Y ++ D S+ + S S H P
Sbjct: 861 MEITFPPTYKFDNGTKNYDTSEKQRIPAWTDRILSLSRNKIIKQLSYDSSPDLIFSDHRP 920
Query: 114 LTIEYDFE 121
+ +
Sbjct: 921 VHATFTMS 928
>gi|147827067|emb|CAN66461.1| hypothetical protein VITISV_035843 [Vitis vinifera]
Length = 734
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 15/106 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ + GDFN + ++ + ++ D L+ P + +
Sbjct: 607 DDPWCLGGDFNITLFQREMSNQRRISSTMRRFVEIVDDLGLVDLPLQGGEFTW------N 660
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ S+ +S H P+ +E
Sbjct: 661 GGLNNQAWARLDRFLVSPSWLDQFSGV-TQSRLSRPISDHFPIVLE 705
>gi|154706938|ref|YP_001424522.1| endonuclease/exonuclease/phosphatase family protein [Coxiella
burnetii Dugway 5J108-111]
gi|165918872|ref|ZP_02218958.1| endonuclease/exonuclease/phosphatase family protein [Coxiella
burnetii RSA 334]
gi|154356224|gb|ABS77686.1| endonuclease/exonuclease/phosphatase family protein [Coxiella
burnetii Dugway 5J108-111]
gi|165917420|gb|EDR36024.1| endonuclease/exonuclease/phosphatase family protein [Coxiella
burnetii RSA 334]
Length = 255
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 14/117 (11%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L K + + + P +IAGDFN G + ++++ + + K +
Sbjct: 153 QLITLSKRIEAHVPSHAPLIIAGDFNDWR--RGAFNYMEKELELKEVYKVL-EGKHAKTY 209
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
R +D L+ SY KLS H PL ++ E
Sbjct: 210 PASRPTLEVDRIYYRG---LKLLSGEIFNESY--------WKKLSDHLPLHAKFAIE 255
>gi|325293378|ref|YP_004279242.1| hypothetical protein AGROH133_07235 [Agrobacterium sp. H13-3]
gi|325061231|gb|ADY64922.1| hypothetical protein AGROH133_07235 [Agrobacterium sp. H13-3]
Length = 369
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 13/113 (11%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++ ++ + A DF S MD L +++ C + S
Sbjct: 262 EEERSALDIFTADDFVTNPMSR------RDVMDRWTLYHSRGPQEQHLCQLDYIWLSPHL 315
Query: 75 YFVIDRDNKNFLIDNSFSIVSY----DQSDLDTRRS---KLSTHCPLTIEYDF 120
+ + + + K S HCP+ + D
Sbjct: 316 AHINATRVPEIIRAGQPYRTVFPPGQEVDRYPRTGWDRPKASDHCPVVMTLDL 368
>gi|323497996|ref|ZP_08103005.1| hypothetical protein VISI1226_08137 [Vibrio sinaloensis DSM 21326]
gi|323317041|gb|EGA70043.1| hypothetical protein VISI1226_08137 [Vibrio sinaloensis DSM 21326]
Length = 289
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 23/123 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + L DQ +K P ++AGDFN D K+ L +E +
Sbjct: 186 RRQLDVL---VDQLLKHQGPIIVAGDFNS-------WSDARMKVMQQALNKLGLKEAQ-- 233
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ F+ + + + S H P+ + + +
Sbjct: 234 -----YQPDNRTQFMTGLALDHVFYRDLV------VETAKAPVTDASDHNPIEMRFRLKN 282
Query: 123 GNV 125
++
Sbjct: 283 KDI 285
>gi|254260300|ref|ZP_04951354.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1710a]
gi|254218989|gb|EET08373.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1710a]
Length = 305
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ ++
Sbjct: 203 ARAADAIVCGDFNSAYRSDAYQRFLAPFPDAPRFVDAWLARHPGKTPPMTAGVYDTAQWS 262
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F+ D +S + D + S H P+ +E
Sbjct: 263 EGPMTCDFAFVTDTLVRRLSRCEID---GTVRASDHQPIVLELS 303
>gi|242047566|ref|XP_002461529.1| hypothetical protein SORBIDRAFT_02g004230 [Sorghum bicolor]
gi|241924906|gb|EER98050.1| hypothetical protein SORBIDRAFT_02g004230 [Sorghum bicolor]
Length = 569
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 7/72 (9%), Positives = 15/72 (20%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + R + R + + +Q
Sbjct: 456 RVFQGWREGRIYFPPTYKYSFNSDRYAGEGRHPKEKRRTPAWCDRILWYGNGLNQLSYVR 515
Query: 104 RRSKLSTHCPLT 115
S+ S H P+
Sbjct: 516 GESRFSDHRPVY 527
>gi|229195000|ref|ZP_04321777.1| Sphingomyelinase C [Bacillus cereus m1293]
gi|228588435|gb|EEK46476.1| Sphingomyelinase C [Bacillus cereus m1293]
Length = 338
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 203 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 262
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 263 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFVENKVLQPKSPQWTVTSWLKKYTY 322
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 323 DDY-SDHYPVAATISMK 338
>gi|149179131|ref|ZP_01857701.1| possible type I phosphodiesterase [Planctomyces maris DSM 8797]
gi|148842030|gb|EDL56423.1| possible type I phosphodiesterase [Planctomyces maris DSM 8797]
Length = 458
Score = 38.3 bits (87), Expect = 0.41, Method: Composition-based stats.
Identities = 11/114 (9%), Positives = 28/114 (24%), Gaps = 6/114 (5%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDD----FWQKMDPDGLLIRFPQEKESTCNVIK 67
W ++ G+P + GD+ + D + + +V
Sbjct: 174 WLEELRAAGLPVDLHGDWTGESGGGVKRDWLYTRMARHLFEKHPPNLLMIHLVEVDHVEH 233
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH--CPLTIEYD 119
+ + + + + T S H P++ +
Sbjct: 234 KYGPRSPEAYWAVSYADDRLRDIVEAIERSPHRDKTTLVVASDHGFFPISKDIR 287
>gi|330998076|ref|ZP_08321904.1| endonuclease/exonuclease/phosphatase family protein [Paraprevotella
xylaniphila YIT 11841]
gi|329569165|gb|EGG50956.1| endonuclease/exonuclease/phosphatase family protein [Paraprevotella
xylaniphila YIT 11841]
Length = 336
Score = 38.3 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 13/122 (10%), Positives = 35/122 (28%), Gaps = 22/122 (18%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
V+ GDFN + + + + L Q + + ++D+ ++
Sbjct: 212 DARIVVMGDFNAG-SEDEVFLEAFIPYFHEPELAFSRQSEVKGSYRYRGIWETIDHILVS 270
Query: 80 RDNKNFLI-------DNSFSIVSYDQSDLDTRR-SKL-------------STHCPLTIEY 118
+ + + T + S H P+T+++
Sbjct: 271 PVLMDNSRPFHTSDGCRAIVAFPFMCEREKTYGGVRPFRTYQGPLYKGGYSDHFPVTLDF 330
Query: 119 DF 120
++
Sbjct: 331 EW 332
>gi|307317812|ref|ZP_07597250.1| Endonuclease/exonuclease/phosphatase [Sinorhizobium meliloti AK83]
gi|306896574|gb|EFN27322.1| Endonuclease/exonuclease/phosphatase [Sinorhizobium meliloti AK83]
Length = 285
Score = 38.3 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 29/120 (24%), Gaps = 21/120 (17%)
Query: 3 SQQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++Q E L G P ++ GD N + F +
Sbjct: 166 ARQAETL---LKATADGAGRPTLLIGDLNEWRMGKRSSLSFLSPIFD------------- 209
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+S L + + S D R S H P+ D +
Sbjct: 210 ---PSHSAVASFPSRFPLLPLDRVLGNPHHLVTSVAVHDTPLARV-ASDHLPVKASIDLK 265
>gi|258627370|ref|ZP_05722154.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|258580408|gb|EEW05373.1| conserved hypothetical protein [Vibrio mimicus VM603]
Length = 281
Score = 38.3 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 30/119 (25%), Gaps = 23/119 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L D+ P ++AGDFN + + GL + T
Sbjct: 185 QEQIAAL---LDELRSFAGPVIVAGDFNSWSEARM--ALLSAALTDIGLQTVVFESDNRT 239
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N LD+ S H PL + +
Sbjct: 240 TFI---NGLPLDHVFYRGLILKKAEAPQSD---------------ASDHNPLLVSFRLP 280
>gi|303316281|ref|XP_003068145.1| Endonuclease/Exonuclease/phosphatase family protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240107821|gb|EER26000.1| Endonuclease/Exonuclease/phosphatase family protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 1197
Score = 38.3 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 17/123 (13%)
Query: 14 DQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDP---------------DGLLIRFP 56
++ I + GDFN ++N + F
Sbjct: 785 NRTINDHDAIIWLGDFNYRIELNDNKVRSLIEKGSLEELYEKDQLNLQISAGVTFQDYFE 844
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
N + + R + + +Q + +T K S H P+
Sbjct: 845 GPITFPPTYRYNNGTDVYDTSEKRRIPAWCDRVLWKGEILNQVEYNTAPLKFSDHRPVYA 904
Query: 117 EYD 119
++
Sbjct: 905 VFE 907
>gi|226289942|gb|EEH45426.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Paracoccidioides brasiliensis Pb18]
Length = 771
Score = 38.3 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 25/125 (20%), Gaps = 25/125 (20%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLL----------------------IRFPQEK 59
P +I GDFN S + D +
Sbjct: 620 PLIICGDFNSYPGSAVYELMNRGHLIEDHPDLEKRLYGNLSRLGMSYPFNLKSAYGAIGE 679
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCPLTIE 117
N +DY ++ Y S H + E
Sbjct: 680 LEFTNYTPDFADVIDYIWYTSNSLQVTGLLGEVDREYLQRVPGFPNY-HFPSDHLAIMAE 738
Query: 118 YDFEK 122
+ F+
Sbjct: 739 FSFKS 743
>gi|255656137|ref|ZP_05401546.1| putative endonuclease/exonuclease/phosphatase [Clostridium
difficile QCD-23m63]
gi|296450430|ref|ZP_06892186.1| endonuclease/exonuclease/phosphatase [Clostridium difficile NAP08]
gi|296879447|ref|ZP_06903441.1| endonuclease/exonuclease/phosphatase [Clostridium difficile NAP07]
gi|296260691|gb|EFH07530.1| endonuclease/exonuclease/phosphatase [Clostridium difficile NAP08]
gi|296429593|gb|EFH15446.1| endonuclease/exonuclease/phosphatase [Clostridium difficile NAP07]
Length = 209
Score = 38.3 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 33/116 (28%), Gaps = 28/116 (24%)
Query: 2 LSQQ--GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
L +Q + L + D + + V+ GDFN K + +D ++ L
Sbjct: 117 LDRQERAKQLDEIIDYRNRLVGIVVLCGDFNEKNVFLSMFNDMAISLNKSYLSTFEKSNS 176
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
++ + + Y + LS H P+
Sbjct: 177 ---------------------RIDYIFVNKNTELKGYTVEKI-----YLSDHYPVI 206
>gi|254422509|ref|ZP_05036227.1| endonuclease/exonuclease/phosphatase family [Synechococcus sp. PCC
7335]
gi|196189998|gb|EDX84962.1| endonuclease/exonuclease/phosphatase family [Synechococcus sp. PCC
7335]
Length = 351
Score = 38.3 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 33/125 (26%), Gaps = 7/125 (5%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE---- 60
Q ++++ + P ++ GDFN +N D I+ E
Sbjct: 230 QTQFVRS-LAEDYAKTYPVILVGDFNSALNRGTFIDASGANHGETQFSIKEMLASEVLVS 288
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + Q S H P+ + +
Sbjct: 289 AVPQSDWIKDLTFPSNQPEYKLDYIFYTPNTIEMVETQVVAAAGE--ASDHLPVMMRFRL 346
Query: 121 EKGNV 125
++
Sbjct: 347 RPDSL 351
>gi|320032538|gb|EFW14491.1| hypothetical protein CPSG_09079 [Coccidioides posadasii str.
Silveira]
Length = 1180
Score = 37.9 bits (86), Expect = 0.42, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 17/123 (13%)
Query: 14 DQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDP---------------DGLLIRFP 56
++ I + GDFN ++N + F
Sbjct: 768 NRTINDHDAIIWLGDFNYRIELNDNKVRSLIEKGSLEELYEKDQLNLQISAGVTFQDYFE 827
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
N + + R + + +Q + +T K S H P+
Sbjct: 828 GPITFPPTYRYNNGTDVYDTSEKRRIPAWCDRVLWKGEILNQVEYNTAPLKFSDHRPVYA 887
Query: 117 EYD 119
++
Sbjct: 888 VFE 890
>gi|24380027|ref|NP_721982.1| putative exodeoxyribonuclease III [Streptococcus mutans UA159]
gi|290579994|ref|YP_003484386.1| putative exodeoxyribonuclease III [Streptococcus mutans NN2025]
gi|13182937|gb|AAK14994.1|AF233280_1 nuclease SmnA [Streptococcus mutans]
gi|24378017|gb|AAN59288.1|AE014995_5 putative exodeoxyribonuclease III [Streptococcus mutans UA159]
gi|254996893|dbj|BAH87494.1| putative exodeoxyribonuclease III [Streptococcus mutans NN2025]
Length = 275
Score = 37.9 bits (86), Expect = 0.42, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 22/125 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD---------------FWQKMDPDGLLIRFPQEK 59
++ P + GD+N I + + G F
Sbjct: 154 AQLDKQKPVLATGDYNVAHKEIDLAHPSSNRRSPGFTDEERAGFTHLLEQGFTDTFRYIH 213
Query: 60 ES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+R+K+S +LI N S +D+ + H P+
Sbjct: 214 GDVPNVYSWWAQRSKTSKIN-NSGWRIDYWLISNRLSDKILKSEMIDSGTRQ--DHTPIL 270
Query: 116 IEYDF 120
++ D
Sbjct: 271 LKIDL 275
>gi|76808611|ref|YP_333756.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 1710b]
gi|237812555|ref|YP_002897006.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei MSHR346]
gi|254179545|ref|ZP_04886144.1| endonuclease/exonuclease/phosphatase family superfamily
[Burkholderia pseudomallei 1655]
gi|254189064|ref|ZP_04895575.1| endonuclease/exonuclease/phosphatase family superfamily
[Burkholderia pseudomallei Pasteur 52237]
gi|76578064|gb|ABA47539.1| endonuclease/exonuclease/phosphatase family superfamily
[Burkholderia pseudomallei 1710b]
gi|157936743|gb|EDO92413.1| endonuclease/exonuclease/phosphatase family superfamily
[Burkholderia pseudomallei Pasteur 52237]
gi|184210085|gb|EDU07128.1| endonuclease/exonuclease/phosphatase family superfamily
[Burkholderia pseudomallei 1655]
gi|237503102|gb|ACQ95420.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei MSHR346]
Length = 286
Score = 37.9 bits (86), Expect = 0.42, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ ++
Sbjct: 184 ARAADAIVCGDFNSAYRSDAYQRFLAPFPDAPRFVDAWLARHPGKTPPMTAGVYDTAQWS 243
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F+ D +S + D + S H P+ +E
Sbjct: 244 EGPMTCDFAFVTDTLVRRLSRCEID---GTVRASDHQPIVLELS 284
>gi|329736070|gb|EGG72343.1| sphingomyelin phosphodiesterase [Staphylococcus epidermidis VCU045]
Length = 327
Score = 37.9 bits (86), Expect = 0.42, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 29/129 (22%), Gaps = 14/129 (10%)
Query: 1 MLSQQGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK---MDPDGLLIRFP 56
+ Q +K++ D+ I P I GD N +S + +
Sbjct: 193 IRQSQMNEIKQFIKDKNIPKNEPVYIGGDLNVIKDSDEYQQMANNLNVSLPTQFDGNAYS 252
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------- 108
+ S + S + K
Sbjct: 253 WDTSSNSIAKYNYPKLEPQHLDYILLDRDHAQPSSWHNDTHRVKSPEWSVKSWGKTYKYN 312
Query: 109 --STHCPLT 115
S H PL+
Sbjct: 313 DYSDHYPLS 321
>gi|255567536|ref|XP_002524747.1| type I inositol polyphosphate 5-phosphatase, putative [Ricinus
communis]
gi|223535931|gb|EEF37590.1| type I inositol polyphosphate 5-phosphatase, putative [Ricinus
communis]
Length = 558
Score = 37.9 bits (86), Expect = 0.42, Method: Composition-based stats.
Identities = 8/75 (10%), Positives = 18/75 (24%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + + N R + R + + +Q
Sbjct: 443 RVFEGWNEGKIYFPPTYKYSNNSDRYAGDDRHPKEKRRTPAWCDRILWHGRGLNQLSYVR 502
Query: 104 RRSKLSTHCPLTIEY 118
S+ S H P+ +
Sbjct: 503 GESRFSDHRPVYSVF 517
>gi|149637342|ref|XP_001510545.1| PREDICTED: similar to APEX nuclease (apurinic/apyrimidinic
endonuclease) 2 [Ornithorhynchus anatinus]
Length = 549
Score = 37.9 bits (86), Expect = 0.42, Method: Composition-based stats.
Identities = 18/146 (12%), Positives = 33/146 (22%), Gaps = 38/146 (26%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD----------TDDFWQKMDP---------- 48
LK A+ ++ G +I GD N I + + ++
Sbjct: 187 LKLRAEAILRAGSHVIILGDVNTSHRPIDHCDPSDPEHFDENPGRRWLNEFLWEPGKAPG 246
Query: 49 ----------------DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
F ++ + L D
Sbjct: 247 KGEVADPPPGGGGGAFVDSFRYFHP-TQTNAFTCWSVPQGARHTNYGTRIDYILGDRILV 305
Query: 93 IVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ S L + S HCP+
Sbjct: 306 TEEFEDSVLLP-EVEGSDHCPVRAVL 330
>gi|154340187|ref|XP_001566050.1| pantothenate kinase subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063369|emb|CAM39545.1| putative pantothenate kinase subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1459
Score = 37.9 bits (86), Expect = 0.42, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 37/136 (27%), Gaps = 29/136 (21%)
Query: 13 ADQKIKTGIPFVIAGDFNRK-------INSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
Q+ +PF+IAGDFN +S + Q D + +E
Sbjct: 199 VRQRKGAEVPFIIAGDFNIYGIDPVTGHSSKRFQEMLNQFQDIGSVRDVIYEETGQNPPT 258
Query: 66 IK---------------RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
DYF+ + + Y S + LS
Sbjct: 259 RPPILFFPELSKLERYESTPQRQDYFLAEARIQVEKPHLE----KYVVSRRRPY-TYLSD 313
Query: 111 HCPLT--IEYDFEKGN 124
H +T + + +
Sbjct: 314 HFGITCRVTLPLNERD 329
>gi|119471244|ref|ZP_01613747.1| hypothetical protein ATW7_11270 [Alteromonadales bacterium TW-7]
gi|119445710|gb|EAW26993.1| hypothetical protein ATW7_11270 [Alteromonadales bacterium TW-7]
Length = 358
Score = 37.9 bits (86), Expect = 0.42, Method: Composition-based stats.
Identities = 14/112 (12%), Positives = 27/112 (24%), Gaps = 16/112 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A P ++AGD N + + + + N
Sbjct: 229 AKAVKNPTRPTIVAGDLNDVA-----WSRSTRLFMQISGFLDPRKGRGFY------NTFH 277
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
YF + + + ++ S H L E +E +
Sbjct: 278 AGYFFMRWPLDHLFHSQG-----FKVKRIERLAKYGSDHFALLTELSYENAS 324
>gi|307275377|ref|ZP_07556520.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX2134]
gi|306508011|gb|EFM77138.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX2134]
gi|315149596|gb|EFT93612.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0012]
Length = 274
Score = 37.9 bits (86), Expect = 0.43, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 5/111 (4%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
L+K+ P VI GD N + G + E+ S ++
Sbjct: 168 QLEKYLAM---GQQPLVILGDLNNPAGTTGYQLVENSYL--PIQDAFVVAEETSGEATVE 222
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + + Y+ + +S H L I+
Sbjct: 223 KKIDGWEENEAALRIDYAFVSKQWHVRKYEVIFDGRKTPIVSDHFGLLIQL 273
>gi|306844277|ref|ZP_07476869.1| Endonuclease/exonuclease/phosphatase family protein [Brucella sp.
BO1]
gi|306275349|gb|EFM57090.1| Endonuclease/exonuclease/phosphatase family protein [Brucella sp.
BO1]
Length = 369
Score = 37.9 bits (86), Expect = 0.43, Method: Composition-based stats.
Identities = 14/160 (8%), Positives = 40/160 (25%), Gaps = 46/160 (28%)
Query: 5 QGEWLKKWADQKIK----TGIPFVIAGDFNRKINSI----GDTD------------DFWQ 44
+ +++ ++K ++I GDFN I + +
Sbjct: 211 EARAIRRIIEEKFGIDRVAERRWLICGDFNDYRERILIGGDEWNGYEFTPVMEEESALNV 270
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS--------- 95
+ + + + + L+ + + +F+ +
Sbjct: 271 LLGDGFAVNLVERRPVMDRWTLYHTRGPLERHLC--QLDYIMASPAFAAKNEHVVPDIIR 328
Query: 96 ------------YDQSDLDTRRS---KLSTHCPLTIEYDF 120
+ K S HCP+++ +
Sbjct: 329 RGQPWRTIFPPEQNVDRYPRTGWDRPKASDHCPVSVTLNM 368
>gi|229160214|ref|ZP_04288213.1| hypothetical protein bcere0009_10090 [Bacillus cereus R309803]
gi|228623175|gb|EEK80002.1| hypothetical protein bcere0009_10090 [Bacillus cereus R309803]
Length = 342
Score = 37.9 bits (86), Expect = 0.43, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 2/118 (1%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + L + T +P +I GD N NS + + +
Sbjct: 226 RNAQAL-EILQGPANTPLPVIITGDLNSPPNSSTNNLFIIAGFKDAWNTVGKGLGLTAEQ 284
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDN-SFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N SL ID + +V Q + S H +
Sbjct: 285 SPDLLNAVSLLNQRIDYILFKNGWEPIEAELVGESQKNRTNTGLWPSDHAGVFASLHL 342
>gi|116206210|ref|XP_001228914.1| hypothetical protein CHGG_02398 [Chaetomium globosum CBS 148.51]
gi|88182995|gb|EAQ90463.1| hypothetical protein CHGG_02398 [Chaetomium globosum CBS 148.51]
Length = 1620
Score = 37.9 bits (86), Expect = 0.43, Method: Composition-based stats.
Identities = 16/112 (14%), Positives = 28/112 (25%), Gaps = 17/112 (15%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------KMDPDGLLIRFPQEKESTCNVI 66
+ + P V+AGDFN + D+F + + L
Sbjct: 547 LQGRPRPDHPVVLAGDFNLQH---PLWDEFGRYERGAEDLLQISSLWDLTIRTPRGAVTR 603
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+F V + + + S H P +E
Sbjct: 604 ---APQERQRGRTSTIDHFWASECIHTVYHGE--ECRGK---SDHYPQVLEI 647
>gi|84385657|ref|ZP_00988688.1| putative phospholipase C precursor [Vibrio splendidus 12B01]
gi|84379637|gb|EAP96489.1| putative phospholipase C precursor [Vibrio splendidus 12B01]
Length = 451
Score = 37.9 bits (86), Expect = 0.43, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 10/120 (8%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR-----FPQEKESTCNVIK 67
+ I + + AGDFN NS +
Sbjct: 329 LTKDIPSNEAVIYAGDFNIDKNSDFVEYLLMLATLDVDPPEFRGYTNATFDPTINPYAAY 388
Query: 68 RNKS-----SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
LDY + R +K + + + S LS H + ++F
Sbjct: 389 NYSGGADVEYLDYVFVSRMHKRATSNTNAVKLHQRLSSDTWGSWHLSDHFAINGNFEFSS 448
>gi|229165616|ref|ZP_04293389.1| Sphingomyelinase C [Bacillus cereus AH621]
gi|228617851|gb|EEK74903.1| Sphingomyelinase C [Bacillus cereus AH621]
Length = 333
Score = 37.9 bits (86), Expect = 0.43, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 31/136 (22%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 198 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNRINAENNSDSEYASMFKTLHASIPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + + + + SF + Q
Sbjct: 258 TWDATTNSIAKYNYPDAPAEHLDYIIASKDHANPSFVENNVLQVKSPKWSVTSWFKKYTY 317
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 DDYSDHYPVEATISMK 333
>gi|213622093|ref|ZP_03374876.1| hypothetical protein SentesTyp_33046 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 110
Score = 37.9 bits (86), Expect = 0.43, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 33/119 (27%), Gaps = 18/119 (15%)
Query: 4 QQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + L W + + P ++AGDFN ++ GL F +
Sbjct: 8 RQAQLTMLAGWVNA-LPESEPVLVAGDFNDW------RQKAGPPLNAAGLEEIFTRAHGR 60
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + N+ + LS H PL+ E
Sbjct: 61 PARTFP-------VSMPLLRLDRIYVKNANASSPGALP--LRNWRHLSDHAPLSAEIHL 110
>gi|49480244|ref|YP_034934.1| sphingomyelin phosphodiesterase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49331800|gb|AAT62446.1| sphingomyelin phosphodiesterase [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 378
Score = 37.9 bits (86), Expect = 0.43, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 243 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 302
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 303 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 362
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 363 NDY-SDHYPVEATISMK 378
>gi|294827778|ref|NP_711210.2| sphingomyelinase C precursor [Leptospira interrogans serovar Lai
str. 56601]
gi|293385623|gb|AAN48228.2| sphingomyelinase C precursor [Leptospira interrogans serovar Lai
str. 56601]
Length = 607
Score = 37.9 bits (86), Expect = 0.43, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 37/121 (30%), Gaps = 10/121 (8%)
Query: 5 QGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR--FPQEKES 61
Q + ++ + + I +I GD N S D + + + F + ++
Sbjct: 301 QFDDIRNFIYSKNIPKDETVLIVGDLNVIKESNEYYDMISRLNVNEPRYVGVPFTWDAKT 360
Query: 62 TCNVIKRNKS----SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL---STHCPL 114
++ LDY + + + + + + + S H P+
Sbjct: 361 NEIAAYYYENEEPVYLDYIFVSKSHAQPPVWQNLAYDPVSKQTWTVSGYTSDEFSDHYPI 420
Query: 115 T 115
Sbjct: 421 Y 421
>gi|149276635|ref|ZP_01882778.1| Endonuclease/exonuclease/phosphatase [Pedobacter sp. BAL39]
gi|149232304|gb|EDM37680.1| Endonuclease/exonuclease/phosphatase [Pedobacter sp. BAL39]
Length = 354
Score = 37.9 bits (86), Expect = 0.43, Method: Composition-based stats.
Identities = 14/103 (13%), Positives = 31/103 (30%), Gaps = 16/103 (15%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P ++AGD N + + + N + YF +
Sbjct: 240 PVIVAGDLNDV-------AWSYTTELFTKISGLLDPRRGRGFF----NSFNAKYFFLRFP 288
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ F++ S + D S H P+ ++ ++ +
Sbjct: 289 LDHIFCSTEFTLSSIKRMDAC-----GSDHFPMCVDLQYDPAS 326
>gi|147794985|emb|CAN76142.1| hypothetical protein VITISV_007730 [Vitis vinifera]
Length = 728
Score = 37.9 bits (86), Expect = 0.43, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 31/104 (29%), Gaps = 11/104 (10%)
Query: 20 GIPFVIAGDFNRK------INSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
P+ + GDFN + T + + L + +
Sbjct: 92 DDPWCLGGDFNITLFQQERSSQRRITSAMRRFAEXVDELELVDMPLQGGEFTW----NGG 147
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ FL+ ++ + ++ + +S H P+ +E
Sbjct: 148 LNNQVWARLDRFLVSPTWLEM-FNGATQIRLSRPISDHFPIVLE 190
>gi|55741922|ref|NP_001006804.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Xenopus
(Silurana) tropicalis]
gi|49903339|gb|AAH76676.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Xenopus
(Silurana) tropicalis]
Length = 517
Score = 37.9 bits (86), Expect = 0.43, Method: Composition-based stats.
Identities = 16/146 (10%), Positives = 31/146 (21%), Gaps = 38/146 (26%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKI--------------NSIGDTDDFWQKMDPD--- 49
L+ A+ ++ G +I GD N Q +
Sbjct: 162 RLLQTRAEAILQKGGHVIILGDVNTSHRPLDHCDPTDLETFEENPGRQWLNQFLGDPVPS 221
Query: 50 -------------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS 90
F + + + S L ++
Sbjct: 222 QKGDSETGTPPSGGSGRFYDSFRYFHPTQRNAFTC-WCSASGARQTNYGTRIDYILGNSE 280
Query: 91 FSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ S + + S HCP+
Sbjct: 281 LVEREFLDSIIMP-EVEGSDHCPVKA 305
>gi|229016006|ref|ZP_04172963.1| Sphingomyelinase C [Bacillus cereus AH1273]
gi|229022224|ref|ZP_04178770.1| Sphingomyelinase C [Bacillus cereus AH1272]
gi|228739078|gb|EEL89528.1| Sphingomyelinase C [Bacillus cereus AH1272]
gi|228745285|gb|EEL95330.1| Sphingomyelinase C [Bacillus cereus AH1273]
Length = 333
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 16/138 (11%), Positives = 34/138 (24%), Gaps = 21/138 (15%)
Query: 4 QQGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIR 54
+Q + ++++ + I +I GD N NS + ++ +
Sbjct: 197 KQLQEIQEFIKNKNIPNNEYVLIGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHT 256
Query: 55 FPQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + +S D+ L S T
Sbjct: 257 ATWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSHIENKVLQPKSPQWTVTSWFKKYT 316
Query: 104 RRSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 317 YDDY-SDHYPVESTISMK 333
>gi|159045821|ref|YP_001534615.1| putative endonuclease/exonuclease/phosphatase [Dinoroseobacter shibae
DFL 12]
gi|157913581|gb|ABV95014.1| putative endonuclease/exonuclease/phosphatase [Dinoroseobacter shibae
DFL 12]
Length = 1123
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 29/128 (22%), Gaps = 20/128 (15%)
Query: 18 KTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+I GD N D + + + S D
Sbjct: 889 SDDPDVLILGDLNSYARETPITTLEDAGYTNLVRALSGEEAYGYRFSGEVGSLDYAMGTD 948
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-----------------STHCPLTIE 117
NS V YD ++ T S + S H P+ +
Sbjct: 949 SMTSQVTGAVEWTINSDEFVIYDYNEESTFGSPILRPTDQGLFDGTNPARNSDHDPVIVG 1008
Query: 118 YDFEKGNV 125
D E +
Sbjct: 1009 LDLESDRI 1016
>gi|60682549|ref|YP_212693.1| hypothetical protein BF3080 [Bacteroides fragilis NCTC 9343]
gi|60493983|emb|CAH08775.1| putative conserved exported protein [Bacteroides fragilis NCTC
9343]
Length = 344
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 16/145 (11%), Positives = 34/145 (23%), Gaps = 31/145 (21%)
Query: 6 GEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ------ 57
+ LK AD I + +I GDFN
Sbjct: 194 AQKLKDAADSLINVRPSTKLIIMGDFNDYPTDKSVVQVLQALSPEVSTHHDRLYHLLARK 253
Query: 58 --EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS--------DLDTRRSK 107
++ + LD+ ++ + + + D +
Sbjct: 254 AKDRNFGSYKYQGEWGLLDHLIVSGTLLDVSGTLFTEEKKANVACLPFLLTKDEKYGGMQ 313
Query: 108 L-------------STHCPLTIEYD 119
S H P+ ++++
Sbjct: 314 PFRTYVGMKYQEGYSDHLPVYVDFE 338
>gi|298208618|ref|YP_003716797.1| Endonuclease/exonuclease/phosphatase [Croceibacter atlanticus
HTCC2559]
gi|83848541|gb|EAP86410.1| Endonuclease/exonuclease/phosphatase [Croceibacter atlanticus
HTCC2559]
Length = 365
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 16/104 (15%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
K+ +P ++ GDFN L+ + + N + + +
Sbjct: 240 KSELPVIVTGDFNDVA-----WSQTTTLFQRISGLLDMRKGRGFF------NTFNANNPL 288
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + F ++ + S H P FE
Sbjct: 289 MRWPLDHMFVSEHFRVIEIGLGNDIN-----SDHFPFYASLSFE 327
>gi|301766552|ref|XP_002918698.1| PREDICTED: endonuclease/exonuclease/phosphatase family
domain-containing protein 1-like [Ailuropoda
melanoleuca]
gi|281339468|gb|EFB15052.1| hypothetical protein PANDA_007201 [Ailuropoda melanoleuca]
Length = 569
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 14/113 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ +K ++ GDF + +S + + + P +
Sbjct: 433 LQETLKGEKDMIVLGDFGQGPDSSDYDILRKEKFYPLVPAHTFTNISTKNPQGSKS---- 488
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEY 118
LD I + K + + + D + S HCP+ E+
Sbjct: 489 ---LDNIWISKSLKKVFTGHWAVVREGLTNPWIPDNWSWGGVASEHCPVLAEF 538
>gi|258621016|ref|ZP_05716050.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258586404|gb|EEW11119.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 281
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 30/119 (25%), Gaps = 23/119 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L D+ P ++AGDFN + + GL + T
Sbjct: 185 QEQIAAL---LDELRSFAGPVIVAGDFNSWSEARM--ALLSAALTDIGLQTVVFESDNRT 239
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N LD+ S H PL + +
Sbjct: 240 TFI---NGLPLDHVFYRGLILKKAEAPQSD---------------ASDHNPLLVSFRLP 280
>gi|290242949|ref|YP_003494619.1| Endonuclease/exonuclease/phosphatase [Thioalkalivibrio sp. K90mix]
gi|288945454|gb|ADC73152.1| Endonuclease/exonuclease/phosphatase [Thioalkalivibrio sp. K90mix]
Length = 361
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 17/127 (13%)
Query: 4 QQGEWLK---KWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
++ E L+ W + ++ GDFN D W M +
Sbjct: 161 EEIEALRRYWDWLADVMPEYAGERILFGDFNLPP-----HHDGWASMRAVAEP-LVTEGA 214
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-------DLDTRRSKLSTHC 112
+ +R + D + +D+ L D S D + R ++S H
Sbjct: 215 TTLSTHDRRYANLYDNLWVPKDHTLPLGDAGILPFPVVLSEVTGVYWDHEKARDRVSDHA 274
Query: 113 PLTIEYD 119
P+ + ++
Sbjct: 275 PVYVLFE 281
>gi|163733661|ref|ZP_02141103.1| Endonuclease/exonuclease/phosphatase [Roseobacter litoralis Och
149]
gi|161392772|gb|EDQ17099.1| Endonuclease/exonuclease/phosphatase [Roseobacter litoralis Och
149]
Length = 326
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 32/105 (30%), Gaps = 16/105 (15%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+ P V GDFN ++ G + + + ++ +
Sbjct: 230 SSDRPTVCMGDFNDVA-----WSWTTKRFKRYGGFVEPRVGRGMYASFH------AEHPL 278
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
I + ++VS++ S H P+ + F++
Sbjct: 279 IRLPIDQIFLTEDVNLVSFN-----RLEGFGSDHFPMAVTVYFDE 318
>gi|172065587|ref|YP_001816299.1| endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
MC40-6]
gi|171997829|gb|ACB68746.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
MC40-6]
Length = 269
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 30/117 (25%), Gaps = 20/117 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + +++ +P ++ GD N + F + L+ RF +
Sbjct: 156 ERSAQ-VQRLLAAFDTGAMPVILMGDIN---------EWFVRGRALQALVTRFRRAPAPR 205
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I +V + R + S H PL
Sbjct: 206 TFPT---------LYPVFSLDRIWIHPGEWLVDVNVHRSMRAR-RASDHYPLVARMR 252
>gi|94967527|ref|YP_589575.1| endonuclease/exonuclease/phosphatase [Candidatus Koribacter
versatilis Ellin345]
gi|94549577|gb|ABF39501.1| Endonuclease/exonuclease/phosphatase [Candidatus Koribacter
versatilis Ellin345]
Length = 246
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 15/121 (12%)
Query: 3 SQQGE-WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q L + ++ + P ++ GDFN + + + F +
Sbjct: 136 RHQARKLLTEAVLRRAEFTGPRIVLGDFNEW----------TRGLASRLMGTEFEAIEPR 185
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
T R + + +F D + S+ SY S H PL E+
Sbjct: 186 THL---RYARTYPGVMPLLHLDHFYFDRTLSLESYCIHR-SRTALIASDHLPLVSEFSLA 241
Query: 122 K 122
+
Sbjct: 242 E 242
>gi|152974192|ref|YP_001373709.1| endonuclease/exonuclease/phosphatase [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152022944|gb|ABS20714.1| Endonuclease/exonuclease/phosphatase [Bacillus cytotoxicus NVH
391-98]
Length = 263
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 3/113 (2%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E + ++ + I + GDFN + G+ D+ + + ++ E T
Sbjct: 153 EQVNRFM-EHIDDHELSFLMGDFNNNAHLRGEGYDYMIQNNFYDTYALAMEKDEGTTV-- 209
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + D + L + + S R +S H + ++ +
Sbjct: 210 QGKIAGWDENKQNLRIDLVLSNKPVKVFSSKVIFNGMNRKIISDHFGVEVQLN 262
>gi|331018945|gb|EGH99001.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. lachrymans str. M302278PT]
Length = 380
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 32/132 (24%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKI-------------NSIGDTDDFWQKMDPD 49
+Q + + G P++I GDFN D++
Sbjct: 248 QKQIASTETLLSKLEGGGTPWLIGGDFNLLPLGQYQRLPEQQRHGYAADSELHALWEKYP 307
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + + DR S VS DT +S
Sbjct: 308 MIPNNTESSGTDRSQWLTHFPNDNRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--IS 365
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 366 DHLPVIGRFLLP 377
>gi|326508336|dbj|BAJ99435.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 912
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 5 QGEWL--KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L + +A K P ++ GDFN S QK++ GL ++++
Sbjct: 357 QIRTLLDRAYATSKRWNDAPVILCGDFNATPKSPLYNYILEQKLNLFGLARNAISGQQTS 416
Query: 63 CNVIKRNKSSLDYFVIDR 80
+ + ++ Y
Sbjct: 417 SHGLYTGSNTSRYTFRPP 434
>gi|301628749|ref|XP_002943509.1| PREDICTED: deoxyribonuclease-1-like 1-like, partial [Xenopus
(Silurana) tropicalis]
Length = 218
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 9/100 (9%), Positives = 30/100 (30%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
+ + GDFN + + ++ D + T + +
Sbjct: 88 DLNILFLGDFNAACSYLSKKKKRTLRLYRDERFHWLIDDTTDTTVRDSTSCAYDRIVAYG 147
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ + + + + ++S H P+ ++ +
Sbjct: 148 KELMANVQAVGIYNFTKALGLSEIQALEVSDHYPVELDLN 187
>gi|302545710|ref|ZP_07298052.1| putative secreted protein [Streptomyces hygroscopicus ATCC 53653]
gi|302463328|gb|EFL26421.1| putative secreted protein [Streptomyces himastatinicus ATCC 53653]
Length = 446
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 33/128 (25%), Gaps = 10/128 (7%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKIN--SIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L + G ++ GD N + + D + D +
Sbjct: 178 ITQLSDFITAN-SAGNAVLVMGDTNTRYTRAADNIRDLATRNGLTDAWVNLVRGGSAPPA 236
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDN-------SFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ L + + + + LD LS H P T+
Sbjct: 237 GSDALVCDPDNVTNTCEVVDKVLYRSGPLLSLTAARYNNENTDFLDAEGKPLSDHYPHTV 296
Query: 117 EYDFEKGN 124
++ ++ +
Sbjct: 297 DFSWKAAD 304
>gi|284033955|ref|YP_003383886.1| endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
gi|283813248|gb|ADB35087.1| Endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
Length = 269
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 24/119 (20%), Gaps = 25/119 (21%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + + + + P ++ GD N +
Sbjct: 174 EQSQRIVQLLA---GSTTPTLLTGDLNAVPTAPEIKHLTTVL---------------KDT 215
Query: 64 NVIKRNKSSLDY--FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
L + R L F S H P+ ++
Sbjct: 216 WPEVGFGLGLTNPAVLPLRRIDYVLHSTDFRAKSARTPITHAA-----DHLPVVATFEL 269
>gi|127514121|ref|YP_001095318.1| endonuclease/exonuclease/phosphatase [Shewanella loihica PV-4]
gi|126639416|gb|ABO25059.1| Endonuclease/exonuclease/phosphatase [Shewanella loihica PV-4]
Length = 871
Score = 37.9 bits (86), Expect = 0.44, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 34/131 (25%), Gaps = 28/131 (21%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI---------------RFPQEKESTC 63
P + DF+ + W +D ++
Sbjct: 705 KEDPIRVLTDFDAANSDRDIMTASWTTLDGKVYEREGSKIEKGYGLINLNTKVHGPDTYS 764
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LST 110
+LD+ + + ++D ++ +S+L SK S
Sbjct: 765 YSYNGELGNLDHALANTSLAERVLDIQDWHINAVESNLFEYGSKYTGELAKSENAFSASD 824
Query: 111 HCPLTIEYDFE 121
H P+ + +
Sbjct: 825 HDPVIVALSYP 835
>gi|302672972|ref|XP_003026173.1| hypothetical protein SCHCODRAFT_79915 [Schizophyllum commune H4-8]
gi|300099854|gb|EFI91270.1| hypothetical protein SCHCODRAFT_79915 [Schizophyllum commune H4-8]
Length = 895
Score = 37.9 bits (86), Expect = 0.45, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 30/113 (26%), Gaps = 10/113 (8%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK---ESTCNVIKR 68
D + + I + AGD N D ++M + + +
Sbjct: 743 RIDNRREAIIAAINAGDIEMLHN----HDQLLKEMKFNRGFRFRGFSEGPLKFIPTYKYD 798
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFS---IVSYDQSDLDTRRSKLSTHCPLTIEY 118
+S R + + + Q +S H P++ +
Sbjct: 799 RRSDEWDTSEKRRSPAWCDRVLWRSRVPTRVRQLHYKRYEPNVSDHRPISAGF 851
>gi|253567149|ref|ZP_04844599.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251943980|gb|EES84499.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
Length = 678
Score = 37.9 bits (86), Expect = 0.45, Method: Composition-based stats.
Identities = 12/122 (9%), Positives = 30/122 (24%), Gaps = 15/122 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRK-------------INSIGDTDDFWQKMDPDGLLIRFPQEK 59
++T +P ++ GDFN + M +G F ++
Sbjct: 555 IAPNLETDMPVIVTGDFNSCSHLDWTERAKPLHHGYGPVAFPASRYMLENGFKDSFREKN 614
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPLTIE 117
+++ + ++S S H +
Sbjct: 615 PDEVVYQGGTVAAIYGQMQMSRIDFIYYKGGLKVLSSKIVRTAPEIDYVWASDHAAVLTV 674
Query: 118 YD 119
++
Sbjct: 675 FE 676
>gi|163852991|ref|YP_001641034.1| endonuclease/exonuclease/phosphatase [Methylobacterium extorquens
PA1]
gi|163664596|gb|ABY31963.1| Endonuclease/exonuclease/phosphatase [Methylobacterium extorquens
PA1]
Length = 353
Score = 37.9 bits (86), Expect = 0.45, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 16/106 (15%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A + KT ++AGD N + L+ Q +
Sbjct: 233 AREVAKTKDSTIVAGDLNDVA-----WSHTNRLFQNISGLLDPRQGRGLFSTFH------ 281
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
Y + + SD+ S H P+ ++
Sbjct: 282 AQYPFARWPLDHIFFSE-----HFLLSDMQRLNDVGSDHFPIWVDL 322
>gi|153805833|ref|ZP_01958501.1| hypothetical protein BACCAC_00070 [Bacteroides caccae ATCC 43185]
gi|149130510|gb|EDM21716.1| hypothetical protein BACCAC_00070 [Bacteroides caccae ATCC 43185]
Length = 608
Score = 37.9 bits (86), Expect = 0.45, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 17/99 (17%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P +AGD N + S + K I ++ + ID
Sbjct: 164 KPLFLAGDMNAEPES------GFIKELQKDFQILSNPKQ-------HTFPAPDPKETIDY 210
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
F+++S + S H P+ +E
Sbjct: 211 IATLKQNAKGFAVISAKVINEP----MASDHRPILVELR 245
>gi|89891525|ref|ZP_01203030.1| endonuclease/exonuclease/phosphatase family protein [Flavobacteria
bacterium BBFL7]
gi|89516299|gb|EAS18961.1| endonuclease/exonuclease/phosphatase family protein [Flavobacteria
bacterium BBFL7]
Length = 372
Score = 37.9 bits (86), Expect = 0.45, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 29/107 (27%), Gaps = 16/107 (14%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ IP +I GDFN D Q G L+ + N Y
Sbjct: 236 YDSNIPVIILGDFNDVA-----WSDSTQLTKTIGKLLDLRIGRGFF------NTYHAQYP 284
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ + LI F + S H P FE
Sbjct: 285 LMRWPLDHILISPEFRLKDAGTGVDFE-----SDHFPSWAVLTFEPD 326
>gi|327474509|gb|EGF19914.1| RgfB protein [Streptococcus sanguinis SK408]
gi|327490066|gb|EGF21854.1| RgfB protein [Streptococcus sanguinis SK1058]
Length = 271
Score = 37.9 bits (86), Expect = 0.45, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 29/116 (25%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K ++ +K V+ GDFN + G + +
Sbjct: 159 QGEW-AKLEEELLKAESSLVLMGDFNNPVGQQGYQTILASPLKLQDSHTVAKEAIGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + +S H L ++
Sbjct: 218 --EGTIAGWDDNKHALKIDYVFTSQGMDVERSAVVFDGKETPVVSDHFGLEVQVTL 271
>gi|301105190|ref|XP_002901679.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262100683|gb|EEY58735.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 312
Score = 37.9 bits (86), Expect = 0.45, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 13/133 (9%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + ++A ++ P V +GDFN +S + + +
Sbjct: 180 RRMLRAIDEFASA-LEASTPVVFSGDFNSLPDSKVYSFITSRNHFKSAYAQYDADGEPKF 238
Query: 63 CNVI-----------KRNKSSLDYFVID-RDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
NV R +LDY + + S+ + S
Sbjct: 239 TNVNGESITDDGTMVPRFVGTLDYIFYRSPRMRPAALMELMSLEDASKEVALPSTISPSD 298
Query: 111 HCPLTIEYDFEKG 123
H PL E+ +
Sbjct: 299 HLPLLCEFHIQPA 311
>gi|226292490|gb|EEH47910.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Paracoccidioides brasiliensis Pb18]
Length = 1237
Score = 37.9 bits (86), Expect = 0.45, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 17/123 (13%)
Query: 14 DQKIKTGIPFVIAGDFNR----------------KINSIGDTDDFWQKMDPDGLLIRFPQ 57
++ I+ + GDFN + S+ + D +M + +
Sbjct: 787 NRSIEDHDAIIWLGDFNYRIGLPNDRVRGLIKDGDLESLYENDQLNLQMVAGLTFPFYSE 846
Query: 58 EKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + N + L + + + Q + + K S H P+
Sbjct: 847 ARITFPPTYKYDNGTDLYDTSEKARIPAWCDRVLWKGGNLRQLEYNAASLKFSDHRPVHA 906
Query: 117 EYD 119
+D
Sbjct: 907 TFD 909
>gi|119176895|ref|XP_001240303.1| hypothetical protein CIMG_07466 [Coccidioides immitis RS]
Length = 1240
Score = 37.9 bits (86), Expect = 0.45, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 17/123 (13%)
Query: 14 DQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDP---------------DGLLIRFP 56
++ I + GDFN ++N + F
Sbjct: 828 NRTINDHDAIIWLGDFNYRIELNDNKVRSLIEKGSLEELYEKDQLNLQISAGVTFQDYFE 887
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
N + + R + + +Q + +T K S H P+
Sbjct: 888 GPITFPPTYRYNNGTDVYDTSEKRRIPAWCDRVLWKGEILNQVEYNTAPLKFSDHRPVYA 947
Query: 117 EYD 119
++
Sbjct: 948 VFE 950
>gi|17986911|ref|NP_539545.1| hypothetical protein BMEI0628 [Brucella melitensis bv. 1 str. 16M]
gi|17982554|gb|AAL51809.1| hypothetical protein BMEI0628 [Brucella melitensis bv. 1 str. 16M]
Length = 337
Score = 37.9 bits (86), Expect = 0.45, Method: Composition-based stats.
Identities = 15/158 (9%), Positives = 38/158 (24%), Gaps = 42/158 (26%)
Query: 5 QGEWLKKWADQKIK----TGIPFVIAGDFNRKINSI----GDTD------------DFWQ 44
+ +++ ++K T ++I GDFN I + +
Sbjct: 179 EARAIRRIIEEKFGIDRVTERRWLICGDFNDYRERILIGGDEWNGYEFTPVMEEESALNV 238
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY-------- 96
+ + + + + L+ + D +
Sbjct: 239 LLGDGFAVNLVERRPVMDRWTLYHTRGPLERHLCQLDYIMASPAFAAKNEHAVPDIIRRG 298
Query: 97 -----------DQSDLDTRRS---KLSTHCPLTIEYDF 120
+ K S HCP+++ +
Sbjct: 299 QPWRTIFPPEQNVDRYPRTGWDRPKASDHCPVSVTLNM 336
>gi|29654239|ref|NP_819931.1| endonuclease/exonuclease/phosphatase family protein [Coxiella
burnetii RSA 493]
gi|29541505|gb|AAO90445.1| endonuclease/exonuclease/phosphatase family protein [Coxiella
burnetii RSA 493]
Length = 255
Score = 37.9 bits (86), Expect = 0.45, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 14/117 (11%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L K + + + P +IAGDFN G + ++++ + + K +
Sbjct: 153 QLITLSKRIEAHVPSHAPLIIAGDFNDWR--RGAFNYMEKELELKEVYKVL-EGKHAKTY 209
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
R +D L+ SY KLS H PL ++ E
Sbjct: 210 PASRPTLEVDRIYYRG---LKLLSGEIFNESY--------WKKLSDHLPLHAKFAIE 255
>gi|313148526|ref|ZP_07810719.1| endonuclease/exonuclease/phosphatase family [Bacteroides fragilis
3_1_12]
gi|313137293|gb|EFR54653.1| endonuclease/exonuclease/phosphatase family [Bacteroides fragilis
3_1_12]
Length = 365
Score = 37.9 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 35/146 (23%), Gaps = 33/146 (22%)
Query: 6 GEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ LK AD + + +I GDFN + + P+
Sbjct: 215 AQKLKNAADSLMCVRRSAKLIIMGDFNDYPTDKSVKQVL-KALSPEENPDHKQLYHLLAR 273
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS-----------------YDQSDLDTRRS 106
RN S Y + ++ + S D
Sbjct: 274 KAKNRNFGSYKYQGEWGLLDHLIVSGTLLDTSGTLFTEEKKASVLRLPFLLIKDEKYGGM 333
Query: 107 KL-------------STHCPLTIEYD 119
+ S H P+ +++
Sbjct: 334 QPFRTYIGMKYQGGYSDHLPVYTDFE 359
>gi|237746873|ref|ZP_04577353.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229378224|gb|EEO28315.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 321
Score = 37.9 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 43/140 (30%), Gaps = 19/140 (13%)
Query: 1 MLSQQGEWL--KKWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDF-----WQKMDPDGLL 52
++ + + L + + + +P I GDFN ++ ++
Sbjct: 182 LMRRAADALGVRALVAEFRQNNALPIAILGDFNDFSLAVSTRIVTGEEHESEQPLSPFYR 241
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS-----------YDQSDL 101
+ E +S + N S + + F+ S Y Q+D
Sbjct: 242 LYDCFEIQSDPDHHMNNLSQFLEENGTPRIDHIFVSEEFTEESGFLTGKIKKMVYLQNDG 301
Query: 102 DTRRSKLSTHCPLTIEYDFE 121
D +LS H + + +
Sbjct: 302 DPDNPELSDHSLALVTIELK 321
>gi|218190510|gb|EEC72937.1| hypothetical protein OsI_06799 [Oryza sativa Indica Group]
Length = 1035
Score = 37.9 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 6/106 (5%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ----EKESTCNVIKRNKSSLD 74
+ P+++ GDFN + + Q V + +
Sbjct: 684 SDPPWLVVGDFNETLWQFEHFSLKQRSELQMQAFRDVVQRCDLHDLGFSGVPYTYDNRRE 743
Query: 75 YF-VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ L D+ + + + S HCP+ +++
Sbjct: 744 GRSNVKVRLDYALADDGWRGLFSTAQVFHLSSPR-SDHCPILVKFS 788
>gi|167619814|ref|ZP_02388445.1| endonuclease/exonuclease/phosphatase family superfamily protein
[Burkholderia thailandensis Bt4]
Length = 123
Score = 37.9 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ +
Sbjct: 21 ARAADAIVCGDFNSAYRSEAYRRFLAPFPDAPRFVDAWLARHPGKTPPMTAGVYDTGQWS 80
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F+ D +S + D ++ S H P+ +E
Sbjct: 81 EGPMTCDFAFVTDTLAHRISRCEID---GATRASDHQPIVLELS 121
>gi|332299279|ref|YP_004441200.1| Endonuclease/exonuclease/phosphatase [Porphyromonas asaccharolytica
DSM 20707]
gi|332176342|gb|AEE12032.1| Endonuclease/exonuclease/phosphatase [Porphyromonas asaccharolytica
DSM 20707]
Length = 360
Score = 37.9 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 27/137 (19%), Gaps = 34/137 (24%)
Query: 16 KIKTGIPFVIAGDFNRKINS------IGDTDDFWQKMDPDGLLIRFPQEK-------EST 62
+ V+ GDFN + + D ++ P
Sbjct: 222 RANPEQSIVVVGDFNATPEDGLTDSWAVSYHAYLSQSDSLAMVDLTPPFTDEQLKTMPPG 281
Query: 63 CNVIKRNKSSLDYFVIDRDN---------------------KNFLIDNSFSIVSYDQSDL 101
+ +D + R K +
Sbjct: 282 SYYYRGYWERIDRLFVSRTLLADTRYPRLELETVRIALPPQKYMHESPAPWGRPRRTYGG 341
Query: 102 DTRRSKLSTHCPLTIEY 118
D+ + S H PL
Sbjct: 342 DSYLAGPSDHLPLVATL 358
>gi|253569415|ref|ZP_04846825.1| metallophosphoesterase [Bacteroides sp. 1_1_6]
gi|251841434|gb|EES69515.1| metallophosphoesterase [Bacteroides sp. 1_1_6]
Length = 611
Score = 37.9 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 38/116 (32%), Gaps = 20/116 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ E LK +A K P +AGD N + S + K I ++
Sbjct: 153 KSLEILKTFAASYKK---PLFLAGDMNAEPESD------FIKELQKEFRILSNPKQ---- 199
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + ID D F++VS + + S H P+ +E
Sbjct: 200 ---HTFPAPVPKETIDYVAAFKQNDKGFAVVSSEVVNEPV----ASDHRPIVVELR 248
>gi|225862654|ref|YP_002748032.1| sphingomyelin phosphodiesterase C [Bacillus cereus 03BB102]
gi|225787518|gb|ACO27735.1| sphingomyelin phosphodiesterase C [Bacillus cereus 03BB102]
Length = 333
Score = 37.9 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 198 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 317
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDY-SDHYPVEATISMK 333
>gi|170701595|ref|ZP_02892542.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
IOP40-10]
gi|170133507|gb|EDT01888.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
IOP40-10]
Length = 269
Score = 37.9 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 30/117 (25%), Gaps = 20/117 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + +++ +P ++ GD N + F + L+ RF +
Sbjct: 156 ERSAQ-VQRLLAAFDTGAMPVILMGDIN---------EWFVRGRALQALVTRFRRAPAPR 205
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I +V + R + S H PL
Sbjct: 206 TFPT---------LYPVFSLDRIWIHPGEWLVDVNVHRSMRAR-RASDHYPLVARMR 252
>gi|196042087|ref|ZP_03109372.1| sphingomyelin phosphodiesterase C [Bacillus cereus NVH0597-99]
gi|196027112|gb|EDX65734.1| sphingomyelin phosphodiesterase C [Bacillus cereus NVH0597-99]
Length = 333
Score = 37.9 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 198 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 317
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDY-SDHYPVEATISMK 333
>gi|53722408|ref|YP_111393.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei K96243]
gi|52212822|emb|CAH38854.1| putative Endonuclease/Exonuclease/phosphatase family protein
[Burkholderia pseudomallei K96243]
Length = 338
Score = 37.9 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 27/117 (23%), Gaps = 20/117 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + + + +P ++ GD N + F + L+ F +
Sbjct: 180 ERSAQ-VARLLAAFDTRALPVILLGDIN---------EWFVRGRALRALVTHFRRAPAPR 229
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +V R + S H PL
Sbjct: 230 TFPT---------LCPLFSLDRIWVHPGEWLVDVAPHRSARAR-RASDHYPLVARIR 276
>gi|324991280|gb|EGC23213.1| RgfB protein [Streptococcus sanguinis SK353]
Length = 271
Score = 37.9 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 31/116 (26%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K + +K P V+ GDFN + G + I +
Sbjct: 159 QGEW-AKLEAELLKAESPLVLMGDFNNPVGQQGYQTILASPLKLQDSHIAAKEIVGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D +I +S H L ++
Sbjct: 218 --EGTIAGWDDNKHALKIDYVFTSQGMNIERSAVVFDGKETPVVSDHFGLEVQVAL 271
>gi|324324718|gb|ADY19978.1| sphingomyelinase C [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 333
Score = 37.9 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 198 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 317
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDY-SDHYPVEATISMK 333
>gi|165872719|ref|ZP_02217348.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. A0488]
gi|167635172|ref|ZP_02393488.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. A0442]
gi|167640897|ref|ZP_02399155.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. A0193]
gi|170689667|ref|ZP_02880846.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. A0465]
gi|170709382|ref|ZP_02899794.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. A0389]
gi|177652826|ref|ZP_02935199.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. A0174]
gi|190568515|ref|ZP_03021421.1| sphingomyelin phosphodiesterase C [Bacillus anthracis
Tsiankovskii-I]
gi|196035669|ref|ZP_03103072.1| sphingomyelin phosphodiesterase C [Bacillus cereus W]
gi|227816451|ref|YP_002816460.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. CDC 684]
gi|228932107|ref|ZP_04094998.1| Sphingomyelinase C [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|229120326|ref|ZP_04249576.1| Sphingomyelinase C [Bacillus cereus 95/8201]
gi|229600728|ref|YP_002865273.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. A0248]
gi|254684245|ref|ZP_05148105.1| sphingomyelinase C [Bacillus anthracis str. CNEVA-9066]
gi|254725906|ref|ZP_05187688.1| sphingomyelinase C [Bacillus anthracis str. A1055]
gi|254734392|ref|ZP_05192105.1| sphingomyelinase C [Bacillus anthracis str. Western North America
USA6153]
gi|254742078|ref|ZP_05199765.1| sphingomyelinase C [Bacillus anthracis str. Kruger B]
gi|254754935|ref|ZP_05206969.1| sphingomyelinase C [Bacillus anthracis str. Vollum]
gi|254762334|ref|ZP_05214178.1| sphingomyelinase C [Bacillus anthracis str. Australia 94]
gi|301052327|ref|YP_003790538.1| sphingomyelinase [Bacillus anthracis CI]
gi|164711580|gb|EDR17128.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. A0488]
gi|167511117|gb|EDR86505.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. A0193]
gi|167529431|gb|EDR92182.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. A0442]
gi|170125703|gb|EDS94618.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. A0389]
gi|170666368|gb|EDT17152.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. A0465]
gi|172081860|gb|EDT66929.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. A0174]
gi|190560309|gb|EDV14288.1| sphingomyelin phosphodiesterase C [Bacillus anthracis
Tsiankovskii-I]
gi|195991636|gb|EDX55601.1| sphingomyelin phosphodiesterase C [Bacillus cereus W]
gi|227005668|gb|ACP15411.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. CDC 684]
gi|228663136|gb|EEL18726.1| Sphingomyelinase C [Bacillus cereus 95/8201]
gi|228827535|gb|EEM73278.1| Sphingomyelinase C [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|229265136|gb|ACQ46773.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. A0248]
gi|300374496|gb|ADK03400.1| sphingomyelinase [Bacillus cereus biovar anthracis str. CI]
Length = 333
Score = 37.9 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 198 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 317
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDY-SDHYPVEATISMK 333
>gi|109390627|emb|CAJ13341.1| pol protein [Drosophila melanogaster]
Length = 1042
Score = 37.9 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 10/117 (8%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK--MDPDGLLIRFPQEKESTCNVIKR 68
+A++ + F++ GD+N K G T + + + + C
Sbjct: 98 NFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATH-- 155
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
+ +F I + S + S H P+ +E + + N+
Sbjct: 156 ---FPHDTRKNPSAIDFSICKGLGRLEKRIS---SSADLSSDHLPILLEINLDTSNL 206
>gi|48596447|emb|CAD92793.1| pol protein [Drosophila melanogaster]
Length = 1080
Score = 37.9 bits (86), Expect = 0.46, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 10/117 (8%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK--MDPDGLLIRFPQEKESTCNVIKR 68
+A++ + F++ GD+N K G T + + + + C
Sbjct: 136 NFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATH-- 193
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
+ +F I + S + S H P+ +E + + N+
Sbjct: 194 ---FPHDTRKNPSAIDFSICKGLGRLEKRIS---SSADLSSDHLPILLEINLDTSNL 244
>gi|90420403|ref|ZP_01228310.1| endonuclease/exonuclease/phosphatase [Aurantimonas manganoxydans
SI85-9A1]
gi|90335131|gb|EAS48884.1| endonuclease/exonuclease/phosphatase [Aurantimonas manganoxydans
SI85-9A1]
Length = 248
Score = 37.9 bits (86), Expect = 0.47, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 31/123 (25%), Gaps = 22/123 (17%)
Query: 1 MLSQQGEWLKKWADQKIKT-GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+L +Q ++ +++ +P + GD N ++
Sbjct: 145 LLRRQRRAQAQFLAERVDARDVPTLAMGDGNDLRLGGALHGALAPRL------------- 191
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S FS+V++ S H + +
Sbjct: 192 -----PVHTAPRSFPARWPMLRLDRIYASEGFSLVTHGPGHASR---PASDHLAVMADLA 243
Query: 120 FEK 122
+ +
Sbjct: 244 WPE 246
>gi|332827905|gb|EGK00627.1| hypothetical protein HMPREF9455_02901 [Dysgonomonas gadei ATCC
BAA-286]
Length = 254
Score = 37.9 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 30/119 (25%), Gaps = 31/119 (26%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQE 58
+++QQ + G P + GD N + +S W+ ++ +
Sbjct: 162 IINQQAKA----------YGKPVFLIGDLNAEPDSEEIKLLSAGWKILNNVEDMTFPSAN 211
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
DR + S S H PL ++
Sbjct: 212 P-------------------DRVIDYIMGYTETGSTYPVYHAKVLDDSIASDHRPLFVD 251
>gi|317016979|gb|ADU86111.1| beta-hemolysin [Staphylococcus aureus]
Length = 164
Score = 37.9 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 28/127 (22%), Gaps = 13/127 (10%)
Query: 1 MLSQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP--Q 57
+ ++Q + + + +K I I GD N + D D L
Sbjct: 37 IRAEQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPEFKDMLKNLNVNDVLYAGHNSTW 96
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
+ +S + + +
Sbjct: 97 DPQSNSIAKYNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAFPYYYVYND 156
Query: 109 -STHCPL 114
S H P+
Sbjct: 157 FSDHYPI 163
>gi|291515956|emb|CBK65166.1| Metal-dependent hydrolase [Alistipes shahii WAL 8301]
Length = 327
Score = 37.9 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 14/116 (12%), Positives = 29/116 (25%), Gaps = 20/116 (17%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI----KRNKSSLDYFVI 78
+++ GDFN + + + F++ D + T V K
Sbjct: 215 WMMMGDFNARSSRD---NWFYKYPAGDTRFLVHDYILRHTPYVDVIAGKYPGEFKTTTGG 271
Query: 79 DRDNKNFLIDNSF--SIVSYDQSDLDTRR-----------SKLSTHCPLTIEYDFE 121
I D S H P+ ++++ +
Sbjct: 272 KSRIDFVYCTPPLYERITHADVVTDAYTEPVRDPAKLSNFWHPSDHRPIVVDFNMK 327
>gi|160900734|ref|YP_001566316.1| endonuclease/exonuclease/phosphatase [Delftia acidovorans SPH-1]
gi|160366318|gb|ABX37931.1| Endonuclease/exonuclease/phosphatase [Delftia acidovorans SPH-1]
Length = 289
Score = 37.9 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 12/112 (10%), Positives = 27/112 (24%), Gaps = 9/112 (8%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGD------TDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
Q V+ GDFN + + + G
Sbjct: 179 QQTKPHTPHAVLCGDFNFEPHEDEYAGLSRPWAAGEEGALTAGQWHNSWSVLHPDQPQPP 238
Query: 68 RNKSSLDYFVIDRDN-KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + +S + ++LS H P+ ++
Sbjct: 239 TFRLFDRQWGPEPGACDFAWVSDSLRGHVRGWAVDS--DTRLSDHQPVLLQL 288
>gi|296471069|gb|DAA13184.1| deoxyribonuclease-1-like 1 precursor [Bos taurus]
Length = 281
Score = 37.9 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 10/95 (10%), Positives = 26/95 (27%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
++ GDFN S+ + + T + + +
Sbjct: 187 VILLGDFNADCTSLTKKRLDDLVLRTQAGFHWAIADGVDTTVRASTHCTYDRIVLHGELL 246
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
++ L + + +S H P+ ++
Sbjct: 247 QSLLRGAAAFDFPQSFGLTEQEALNISDHYPVEVD 281
>gi|228925864|ref|ZP_04088948.1| Sphingomyelinase C [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228833879|gb|EEM79432.1| Sphingomyelinase C [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
Length = 333
Score = 37.9 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 198 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 317
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDY-SDHYPVEATISMK 333
>gi|150008485|ref|YP_001303228.1| hypothetical protein BDI_1871 [Parabacteroides distasonis ATCC
8503]
gi|149936909|gb|ABR43606.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
Length = 304
Score = 37.9 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 32/127 (25%), Gaps = 19/127 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKI--------NSIGDTDD--------FWQKMDPDGLLIRFP 56
Q +K G P + GDFN + ++ +
Sbjct: 178 IQQVMKEGYPVFLTGDFNEPSFLDWTQRAADADIHKIKVEWPATKAFSEIGMNDSYRTIH 237
Query: 57 QE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ ++ + + + +SF + + S H
Sbjct: 238 PDEVSTPGYTWTPVPSEQDILDRLDFVLYSGCKVTDSFITGESEATSDVVVSPYPSDHRM 297
Query: 114 LTIEYDF 120
+T ++F
Sbjct: 298 VTSCFNF 304
>gi|307286767|ref|ZP_07566853.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0109]
gi|306502245|gb|EFM71529.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0109]
gi|315165181|gb|EFU09198.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1302]
Length = 274
Score = 37.9 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 5/113 (4%)
Query: 7 EWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
EWL+ ++ + TG P VI GD N + G + E+ S
Sbjct: 165 EWLQ--LEKYLATGQQPLVILGDLNNPAGTTGYQLVENSYL--PIQDAFVVAEETSGEAT 220
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+++ + + + + Y+ + +S H L I+
Sbjct: 221 VEKKIDGWEENEAALRIDYAFVPKQWHVQKYEVIFDGRKTPIVSDHFGLLIQL 273
>gi|283780185|ref|YP_003370940.1| endonuclease/exonuclease/phosphatase [Pirellula staleyi DSM 6068]
gi|283438638|gb|ADB17080.1| Endonuclease/exonuclease/phosphatase [Pirellula staleyi DSM 6068]
Length = 325
Score = 37.9 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 30/107 (28%), Gaps = 10/107 (9%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ ++ GDFN D +++ L++ + + N
Sbjct: 207 VRDDQRREDDVIMLGDFN-------VNDKNLRQLGSVPSLVKVVAGVPTNT---RGNAQY 256
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F + + + ++S H P+ E+
Sbjct: 257 DNILFAGTSTTEFTGRGGVYDFMREFNLTQEQALQVSDHLPVWAEFS 303
>gi|308805699|ref|XP_003080161.1| unnamed protein product [Ostreococcus tauri]
gi|116058621|emb|CAL54328.1| unnamed protein product [Ostreococcus tauri]
Length = 356
Score = 37.9 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 22/122 (18%), Gaps = 26/122 (21%)
Query: 21 IPFVIAGDFNRKINSIGDT-----------DDFWQKMDPDGLLIRFPQEKESTCN----- 64
++AGD N + S D ++ D
Sbjct: 221 ERVLLAGDINVEHGSAEYEHMMHSIFPGAIDLMNSPLNDDDSFRLTFPVARWRHYILKCG 280
Query: 65 --VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD--------LDTRRSKLSTHCPL 114
+ D + D R LS H P+
Sbjct: 281 RESRYFDLEPRVRIDYVMDLTPMGVSQGVPPRHKHVDSGYVNRALCRDARGRALSDHFPI 340
Query: 115 TI 116
Sbjct: 341 VA 342
>gi|148227204|ref|NP_001086779.1| APEX nuclease (apurinic/apyrimidinic endonuclease) 2 [Xenopus
laevis]
gi|50415222|gb|AAH77433.1| Apex2-prov protein [Xenopus laevis]
Length = 517
Score = 37.9 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 16/144 (11%), Positives = 31/144 (21%), Gaps = 38/144 (26%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKI--------------NSIGDTDDFWQKMDPD----- 49
L+ A+ ++ G +I GD N Q +
Sbjct: 164 LQTRAEAILQNGGHVIILGDVNTSHRPLDHCDPTDLETFEENPGRQWLNQFLGDPIPSQK 223
Query: 50 -----------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
F +++ + S L +
Sbjct: 224 GDSETVMPPSAGSGLFYDSFRYFHPTQKNAFTC-WCSASGARQTNYGTRIDYILGNRELV 282
Query: 93 IVSYDQSDLDTRRSKLSTHCPLTI 116
+ S + + S HCP+
Sbjct: 283 ESEFLDSVIMP-EVEGSDHCPVKA 305
>gi|86140659|ref|ZP_01059218.1| hypothetical protein MED217_15945 [Leeuwenhoekiella blandensis
MED217]
gi|85832601|gb|EAQ51050.1| hypothetical protein MED217_15945 [Leeuwenhoekiella blandensis
MED217]
Length = 351
Score = 37.9 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 13/107 (12%), Positives = 28/107 (26%), Gaps = 16/107 (14%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
++ P ++ GD N + LI + DY+
Sbjct: 233 LEDNHPIIVCGDLNDV-----VWSRVSRLFAKVTGLIDPRIGRGLFPTFH------ADYW 281
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + + + + + S H P+ + E G
Sbjct: 282 YLRFPIDHLFHSTNVT-----VDTMQRLPNIGSDHYPMFFTFWLENG 323
>gi|323702006|ref|ZP_08113675.1| Endonuclease/exonuclease/phosphatase [Desulfotomaculum nigrificans
DSM 574]
gi|323533092|gb|EGB22962.1| Endonuclease/exonuclease/phosphatase [Desulfotomaculum nigrificans
DSM 574]
Length = 229
Score = 37.9 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 33/118 (27%), Gaps = 25/118 (21%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E + P ++ GDFN +S + + + +
Sbjct: 136 EQVEII---LKVMTAANKPSILVGDFNDDRDSQEF-NLISRLLQDATAIT---------- 181
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + + +++ S+ S H P+ +E
Sbjct: 182 ------GGFETFPADNEQLDFVFVSHHWQVLAARPII-----SRASDHLPVLVELSLN 228
>gi|271964023|ref|YP_003338219.1| hypothetical protein Sros_2500 [Streptosporangium roseum DSM 43021]
gi|270507198|gb|ACZ85476.1| hypothetical protein Sros_2500 [Streptosporangium roseum DSM 43021]
Length = 334
Score = 37.9 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 12/118 (10%), Positives = 31/118 (26%), Gaps = 13/118 (11%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ L+ ++AGDFN ++ + + + +
Sbjct: 228 AQGLRALPRAGTGAEPYRILAGDFNATLDHAIMRELLATGYRDAADV--------TGQGL 279
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
I V + D ++ S+ + + H + E + +
Sbjct: 280 IPTWPQQGWEPVPGVALDHVFADARIAVRSFGVHRVP-----GTDHRSVFAELELPRA 332
>gi|223647224|gb|ACN10370.1| Deoxyribonuclease gamma precursor [Salmo salar]
gi|223673101|gb|ACN12732.1| Deoxyribonuclease gamma precursor [Salmo salar]
Length = 316
Score = 37.9 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 12/100 (12%), Positives = 27/100 (27%), Gaps = 2/100 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+ G FN + D ++ ++ T + + V
Sbjct: 181 EAVMFLGAFNAGCGHMTRQDKANIRLFSIPGFFWLIRDXVDTTVGDTASCAYDRIVVHGE 240
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKL--STHCPLTIEY 118
+ S + + ++ L S H P+ +E
Sbjct: 241 RFLKAIKPYSAQVFNIANEYKLSKERVLEVSDHFPIEVEL 280
>gi|116627133|ref|YP_819752.1| hypothetical protein STER_0240 [Streptococcus thermophilus LMD-9]
gi|116100410|gb|ABJ65556.1| Metal-dependent hydrolase [Streptococcus thermophilus LMD-9]
Length = 259
Score = 37.9 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 13/103 (12%), Positives = 27/103 (26%), Gaps = 3/103 (2%)
Query: 11 KWADQKIKT-GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+++ ++ G P ++AGDFN G + + S V
Sbjct: 151 ARIEERFQSIGKPLILAGDFNNPAGREGYQTILASPLKLQDSFQVDQKTNGSYT-VGPGI 209
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+++ +S +S H
Sbjct: 210 DGWKGNE-EPLRIDYVFASQEWAVNRLSVIFDGNNQSLVSDHY 251
>gi|77554244|gb|ABA97040.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1913
Score = 37.9 bits (86), Expect = 0.49, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 4/112 (3%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ----EKESTCNVI 66
+ D K + +P++I GDFN + + Q V
Sbjct: 722 RLLDLKQSSPLPWMIIGDFNETLWQFEHFSVSKRGEAQMRAFRDVLQICELVDLGFSGVP 781
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + + ++ Y S + S S HCP+ +++
Sbjct: 782 YTYDNRREGRSNVKVRLDRALADNSWRDIYSNSQVVHLTSSCSDHCPILLKF 833
>gi|297580880|ref|ZP_06942805.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297534706|gb|EFH73542.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|327484756|gb|AEA79163.1| hypothetical protein VCLMA_A1962 [Vibrio cholerae LMA3894-4]
Length = 281
Score = 37.9 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 20/114 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L D+ P ++AGDFN + + L QE V
Sbjct: 186 QQLTALLDELRDFTGPVIVAGDFNS-------WSEARMALLSTQLASVGLQE------VR 232
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + F SD S H PL + +
Sbjct: 233 FSPDNRTTFINGLPLDHVFYRGLQLEKAEAPISD-------ASDHNPLLVRFRL 279
>gi|89889838|ref|ZP_01201349.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
gi|89518111|gb|EAS20767.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7]
Length = 329
Score = 37.9 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 23/126 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
++ + G ++ GDFN + ++ + + S K +L
Sbjct: 205 EKHLLEGTNIIVMGDFNDDPENDSIRNEILPYGFQNVTAPLKKFHRGSL---NHNFKWNL 261
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKL-------------------STHCP 113
++ D+ + ++ D D+ R+ K S H P
Sbjct: 262 FDQIMVSDSLINDVPDALYFHQADIFDDIMLRQWKGKYRGQPARTFVGRTYKGGYSDHFP 321
Query: 114 LTIEYD 119
+ +
Sbjct: 322 VYMILR 327
>gi|52144632|ref|YP_082195.1| sphingomyelin phosphodiesterase [Bacillus cereus E33L]
gi|51978101|gb|AAU19651.1| sphingomyelin phosphodiesterase [Bacillus cereus E33L]
Length = 378
Score = 37.9 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 243 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 302
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 303 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 362
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 363 NDY-SDHYPVEATISMK 378
>gi|50550023|ref|XP_502484.1| YALI0D06413p [Yarrowia lipolytica]
gi|49648352|emb|CAG80672.1| YALI0D06413p [Yarrowia lipolytica]
Length = 1061
Score = 37.9 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 18/121 (14%)
Query: 17 IKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQEKE 60
IK + GDFN +I+ GD D ++M + + +
Sbjct: 770 IKDHDCVIWLGDFNYRIDMDGDVVRQIVAKKEYGLLFEHDQLNRQMVLGETFPYYNEMEI 829
Query: 61 ST--CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ ++ D R + S H P+ E+
Sbjct: 830 NFPPTYKFDNGTATYDTSEKFRTPSWTDRVLYKGTGLRGINYGCVSDLLFSDHRPVYAEF 889
Query: 119 D 119
+
Sbjct: 890 N 890
>gi|257463185|ref|ZP_05627585.1| hypothetical protein FuD12_04976 [Fusobacterium sp. D12]
gi|317060775|ref|ZP_07925260.1| dnase I-like protein dhp2 precursor [Fusobacterium sp. D12]
gi|313686451|gb|EFS23286.1| dnase I-like protein dhp2 precursor [Fusobacterium sp. D12]
Length = 274
Score = 37.9 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 39/114 (34%), Gaps = 5/114 (4%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
++ + + +I GDFN D+ + + D I + + + +
Sbjct: 165 RYFQDRDRKENDILIGGDFNLSAF-----DEAFSPLYEDKDQIIYGIDPNIKTTIGMKKM 219
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
++ + V + D R+K+S H P+ I + ++ +
Sbjct: 220 ANSYDNIFLSKIYTQEFTGKSGAVDFTNRDYKVMRNKVSDHLPVFIIVNVDRDD 273
>gi|115402641|ref|XP_001217397.1| hypothetical protein ATEG_08811 [Aspergillus terreus NIH2624]
gi|114189243|gb|EAU30943.1| hypothetical protein ATEG_08811 [Aspergillus terreus NIH2624]
Length = 592
Score = 37.9 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 14/156 (8%), Positives = 31/156 (19%), Gaps = 45/156 (28%)
Query: 4 QQG--EWLKKWADQKIKTGIPFVIAGDFNRKINSIG------------------DTDDFW 43
+Q + + + G V+ GD N I +
Sbjct: 140 RQSFLDLMDTRLRNLVAMGKRVVVTGDLNISAREIDQAPAAEAIRKGTLTEDDFVSAPAR 199
Query: 44 QKMDP--------------------DGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDN 82
+ + + F +++ +R +
Sbjct: 200 RLFNQLLFEGKVLGQRDEGREQPVLHDICRMFHPDRKGMYTCWEQRINA--RPGNYGSRI 257
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
L + S HCP+ +
Sbjct: 258 DYVLCSLDMRDWI--EDSNIQEGLMGSDHCPVYAIF 291
>gi|22126975|ref|NP_670398.1| hypothetical protein y3099 [Yersinia pestis KIM 10]
gi|45442540|ref|NP_994079.1| hypothetical protein YP_2772 [Yersinia pestis biovar Microtus str.
91001]
gi|149366920|ref|ZP_01888954.1| hypothetical protein YPE_2178 [Yersinia pestis CA88-4125]
gi|153948010|ref|YP_001400031.1| hypothetical protein YpsIP31758_1050 [Yersinia pseudotuberculosis
IP 31758]
gi|167399890|ref|ZP_02305408.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|218928246|ref|YP_002346121.1| hypothetical protein YPO1077 [Yersinia pestis CO92]
gi|229841008|ref|ZP_04461167.1| endonuclease-exonuclease-phosphatase family member [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229843113|ref|ZP_04463259.1| endonuclease-exonuclease-phosphatase family member [Yersinia pestis
biovar Orientalis str. India 195]
gi|229903524|ref|ZP_04518637.1| endonuclease-exonuclease-phosphatase family member [Yersinia pestis
Nepal516]
gi|39932536|sp|Q8ZH34|Y1077_YERPE RecName: Full=UPF0294 protein YPO1077/y3099/YP_2772
gi|166977869|sp|A7FFK3|Y1050_YERP3 RecName: Full=UPF0294 protein YpsIP31758_1050
gi|21960018|gb|AAM86649.1|AE013910_11 hypothetical protein y3099 [Yersinia pestis KIM 10]
gi|45437405|gb|AAS62956.1| conserved hypothetical protein [Yersinia pestis biovar Microtus
str. 91001]
gi|115346857|emb|CAL19743.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|149291294|gb|EDM41369.1| hypothetical protein YPE_2178 [Yersinia pestis CA88-4125]
gi|152959505|gb|ABS46966.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pseudotuberculosis IP 31758]
gi|167050598|gb|EDR62006.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|229679294|gb|EEO75397.1| endonuclease-exonuclease-phosphatase family member [Yersinia pestis
Nepal516]
gi|229689460|gb|EEO81521.1| endonuclease-exonuclease-phosphatase family member [Yersinia pestis
biovar Orientalis str. India 195]
gi|229697374|gb|EEO87421.1| endonuclease-exonuclease-phosphatase family member [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|320014213|gb|ADV97784.1| endonuclease-exonuclease-phosphatase family member [Yersinia pestis
biovar Medievalis str. Harbin 35]
Length = 260
Score = 37.9 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN Q+++ + +E V R+++
Sbjct: 175 DQIASHRGPVILAGDFNA---------WSRQRINALQHFAQDAGLQEVEFRVDHRSRAFG 225
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D ++ S H PL +E+
Sbjct: 226 RPL------------DFIFYRGLTVIDASVLVTRASDHNPLIVEFQ 259
>gi|269954850|ref|YP_003324639.1| endonuclease/exonuclease/phosphatase [Xylanimonas cellulosilytica
DSM 15894]
gi|269303531|gb|ACZ29081.1| Endonuclease/exonuclease/phosphatase [Xylanimonas cellulosilytica
DSM 15894]
Length = 329
Score = 37.9 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 25/125 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q WL + P V+ GD N + S+ W+ +
Sbjct: 218 QTQLRWLAERLR---GAPRPLVLMGDLNLR-GSVPTELTGWRDLVE------------ID 261
Query: 63 CNVIKRNKSSLDYFVIDR-------DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
R +D+ ++D + S + +S HC +
Sbjct: 262 TYPRHRPWIGIDHVLVDDVAPAVGEPIDPGAPHPGGRVHSLAPAR--AVDLGISDHCAVV 319
Query: 116 IEYDF 120
++
Sbjct: 320 VDVRL 324
>gi|294951933|ref|XP_002787171.1| hypothetical protein Pmar_PMAR007863 [Perkinsus marinus ATCC 50983]
gi|239901875|gb|EER18967.1| hypothetical protein Pmar_PMAR007863 [Perkinsus marinus ATCC 50983]
Length = 587
Score = 37.9 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 34/135 (25%), Gaps = 22/135 (16%)
Query: 3 SQQGEWLKK----WADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ 57
Q + + P ++ GDFN I + D + +
Sbjct: 457 RHQANACSSAVLLFLQELSDATRIPVLVGGDFNCDIVDLLDGNPDLDNALAGLTVAE--- 513
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS----------DLDTRRSK 107
R K + D + N + F + + + D +
Sbjct: 514 ----YSYKRHRFKGNRDKLIDRLAVINPRSNREFDLKLHSVAACSFEESLFVDDHEPGVR 569
Query: 108 LSTHCPLTIEYDFEK 122
+ H P+ + +
Sbjct: 570 VFDHLPVMGQLSLGE 584
>gi|256086538|ref|XP_002579455.1| ap endonuclease [Schistosoma mansoni]
gi|238664890|emb|CAZ35694.1| ap endonuclease, putative [Schistosoma mansoni]
Length = 426
Score = 37.9 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 33/136 (24%), Gaps = 37/136 (27%)
Query: 20 GIPFVIAGDFNRKINSIG---------------DTDDFWQKMDP---------------- 48
VIAGDFN I F Q +
Sbjct: 188 ENNVVIAGDFNICHKMIDHCAPDELMMDKFSNSFRQWFDQLLIEEQQDVSLDNQSSVGLR 247
Query: 49 --DGLLIRFPQEKE-STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR- 104
+ ++ + R + + + D F + I + +++
Sbjct: 248 RFVDIFRLLHPHRKNAFTCWSSRTNARQTNYGVRLDYILFDMKLVEIITTISDNNIQADL 307
Query: 105 --RSKLSTHCPLTIEY 118
S HCP+ +
Sbjct: 308 MSHINGSDHCPIYADL 323
>gi|57235078|ref|YP_180859.1| endonuclease/exonuclease/phosphatase family protein
[Dehalococcoides ethenogenes 195]
gi|57225526|gb|AAW40583.1| endonuclease/exonuclease/phosphatase family protein
[Dehalococcoides ethenogenes 195]
Length = 591
Score = 37.9 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 26/117 (22%), Gaps = 23/117 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E L + VI GDFN + +S + G +
Sbjct: 498 QAEELADF----WHHAPSTVIMGDFNAEPDSAEI-----AILRQAGFSDSLEGQTSVLTY 548
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + D T S S H + +
Sbjct: 549 ---------HAADLYQRIDYIWASPDIEYL-----DSYTVFSLASDHLAIIADIRLS 591
>gi|62290271|ref|YP_222064.1| hypothetical protein BruAb1_1372 [Brucella abortus bv. 1 str.
9-941]
gi|82700193|ref|YP_414767.1| endonuclease/exonuclease/phosphatase family protein [Brucella
melitensis biovar Abortus 2308]
gi|189024505|ref|YP_001935273.1| Endonuclease/exonuclease/phosphatase family [Brucella abortus S19]
gi|237815777|ref|ZP_04594774.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|254689573|ref|ZP_05152827.1| Endonuclease/exonuclease/phosphatase family protein [Brucella
abortus bv. 6 str. 870]
gi|254697714|ref|ZP_05159542.1| Endonuclease/exonuclease/phosphatase family protein [Brucella
abortus bv. 2 str. 86/8/59]
gi|254730604|ref|ZP_05189182.1| Endonuclease/exonuclease/phosphatase family protein [Brucella
abortus bv. 4 str. 292]
gi|256045007|ref|ZP_05447910.1| Endonuclease/exonuclease/phosphatase family protein [Brucella
melitensis bv. 1 str. Rev.1]
gi|256257822|ref|ZP_05463358.1| Endonuclease/exonuclease/phosphatase family protein [Brucella
abortus bv. 9 str. C68]
gi|256369791|ref|YP_003107302.1| Endonuclease/exonuclease/phosphatase family protein [Brucella
microti CCM 4915]
gi|260546815|ref|ZP_05822554.1| endonuclease/exonuclease/phosphatase family protein [Brucella
abortus NCTC 8038]
gi|260565390|ref|ZP_05835874.1| endonuclease/exonuclease/phosphatase family protein [Brucella
melitensis bv. 1 str. 16M]
gi|260755101|ref|ZP_05867449.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 6 str.
870]
gi|260758320|ref|ZP_05870668.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 4 str.
292]
gi|260762146|ref|ZP_05874489.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 2 str.
86/8/59]
gi|260884113|ref|ZP_05895727.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 9 str.
C68]
gi|265991436|ref|ZP_06103993.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 1
str. Rev.1]
gi|297248660|ref|ZP_06932378.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 5 str.
B3196]
gi|62196403|gb|AAX74703.1| hypothetical conserved protein [Brucella abortus bv. 1 str. 9-941]
gi|82616294|emb|CAJ11351.1| Endonuclease/exonuclease/phosphatase family [Brucella melitensis
biovar Abortus 2308]
gi|189020077|gb|ACD72799.1| Endonuclease/exonuclease/phosphatase family [Brucella abortus S19]
gi|237789075|gb|EEP63286.1| Hypothetical protein, conserved [Brucella abortus str. 2308 A]
gi|255999954|gb|ACU48353.1| Endonuclease/exonuclease/phosphatase family protein [Brucella
microti CCM 4915]
gi|260095865|gb|EEW79742.1| endonuclease/exonuclease/phosphatase family protein [Brucella
abortus NCTC 8038]
gi|260151458|gb|EEW86552.1| endonuclease/exonuclease/phosphatase family protein [Brucella
melitensis bv. 1 str. 16M]
gi|260668638|gb|EEX55578.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 4 str.
292]
gi|260672578|gb|EEX59399.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 2 str.
86/8/59]
gi|260675209|gb|EEX62030.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 6 str.
870]
gi|260873641|gb|EEX80710.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 9 str.
C68]
gi|263002220|gb|EEZ14795.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 1
str. Rev.1]
gi|297175829|gb|EFH35176.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 5 str.
B3196]
Length = 369
Score = 37.9 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 15/158 (9%), Positives = 38/158 (24%), Gaps = 42/158 (26%)
Query: 5 QGEWLKKWADQKIK----TGIPFVIAGDFNRKINSI----GDTD------------DFWQ 44
+ +++ ++K T ++I GDFN I + +
Sbjct: 211 EARAIRRIIEEKFGIDRVTERRWLICGDFNDYRERILIGGDEWNGYEFTPVMEEESALNV 270
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY-------- 96
+ + + + + L+ + D +
Sbjct: 271 LLGDGFAVNLVERRPVMDRWTLYHTRGPLERHLCQLDYIMASPAFAAKNEHAVPDIIRRG 330
Query: 97 -----------DQSDLDTRRS---KLSTHCPLTIEYDF 120
+ K S HCP+++ +
Sbjct: 331 QPWRTIFPPEQNVDRYPRTGWDRPKASDHCPVSVTLNM 368
>gi|71019793|ref|XP_760127.1| hypothetical protein UM03980.1 [Ustilago maydis 521]
gi|46099689|gb|EAK84922.1| hypothetical protein UM03980.1 [Ustilago maydis 521]
Length = 1308
Score = 37.9 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 28/123 (22%), Gaps = 22/123 (17%)
Query: 19 TGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQEKEST 62
V +GD N +I+ D D +++ + +
Sbjct: 1145 DHELVVFSGDLNYRIDHSRDTVLSAIAARKISPLLEQDQLRKELKHNPAFRLKDFSEAPI 1204
Query: 63 CN---VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD---LDTRRSKLSTHCPLTI 116
+ + F D+ +S H P+T
Sbjct: 1205 SFLPTYKYDRGTHEWDSSEKNRIPAWCDRVLFRSHHADRIRCLEYRRWECTISDHRPVTA 1264
Query: 117 EYD 119
++
Sbjct: 1265 VFE 1267
>gi|330504967|ref|YP_004381836.1| endonuclease/exonuclease/phosphatase [Pseudomonas mendocina NK-01]
gi|328919253|gb|AEB60084.1| endonuclease/exonuclease/phosphatase [Pseudomonas mendocina NK-01]
Length = 363
Score = 37.9 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 29/130 (22%), Gaps = 15/130 (11%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN--------RKINSIGDTDDFWQKMDPDGLLI 53
+ +Q + Q TG +V+ GD N ++
Sbjct: 230 MQRQVQMTDDLLQQLQGTGKTWVLGGDLNLLPPGQFQHLPEGQRSWYAADSELQDLARRY 289
Query: 54 RFPQEKESTC-----NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ + + DR + ++ +
Sbjct: 290 PMIPSLQQASGAEQAQWYTHSPNDPAAHGPDRTLDYLFYSPRLTPLASQV--RQHDTLSI 347
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 348 SDHLPVIGRF 357
>gi|327393209|dbj|BAK10631.1| endonuclease/exonuclease/phosphatase family protein YbhP [Pantoea
ananatis AJ13355]
Length = 253
Score = 37.9 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 32/116 (27%), Gaps = 15/116 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + + P V+AGDFN K+ G ++ +
Sbjct: 153 QMAMLNEMVLA-LPPDAPVVVAGDFND-------WQGRANKILQKGAGLKEVFSIKHG-- 202
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ + S LS H PL +E
Sbjct: 203 ---RPARTFPARFPLLRLDRIYVRNATVSHPWALPRKPW--SHLSDHAPLAVEIHL 253
>gi|302780964|ref|XP_002972256.1| hypothetical protein SELMODRAFT_97137 [Selaginella moellendorffii]
gi|300159723|gb|EFJ26342.1| hypothetical protein SELMODRAFT_97137 [Selaginella moellendorffii]
Length = 565
Score = 37.9 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 27/126 (21%), Gaps = 22/126 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF------WQKMDPDGLLIRFPQEKESTCNV--- 65
+ I + GD N +I WQ + L
Sbjct: 278 ETIMGHDRIIWLGDLNYRIALPDAQTRLLISRRDWQTLLRRDQLRTEKMAGRVFDGWQEG 337
Query: 66 -------------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
R L R + + Q + S+ S H
Sbjct: 338 CIEFPPTYKYVINSDRYSGLLLKAGEKRRTPAWCDRILWYGKGLRQLEYRRSESRFSDHR 397
Query: 113 PLTIEY 118
P++ +
Sbjct: 398 PVSAVF 403
>gi|302559570|ref|ZP_07311912.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
gi|302477188|gb|EFL40281.1| integral membrane protein [Streptomyces griseoflavus Tu4000]
Length = 333
Score = 37.9 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 28/118 (23%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ L+ G P V+AGDFN + + L +
Sbjct: 228 QRELGRLRD--AAAADRGTPTVLAGDFNATQDHAAFRRILDTGLRDAARLAGADRTPTWP 285
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + +D+ ++ + H L +
Sbjct: 286 SRTLPTLGAQIDHVLVSEHFAAHRTHVLPLPDT--------------DHRALLTDLTL 329
>gi|217077897|ref|YP_002335615.1| endonuclease/Exonuclease/phosphatase family protein [Thermosipho
africanus TCF52B]
gi|217037752|gb|ACJ76274.1| endonuclease/Exonuclease/phosphatase family protein [Thermosipho
africanus TCF52B]
Length = 354
Score = 37.9 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 18/131 (13%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ QQ +++ + A ++ + G +I GD+N + + ++ + +
Sbjct: 228 LREQQLKFIMETAKKEFELGNYVIIGGDWNSEFFD----NLDFKYTEEKPESYIKLPDFF 283
Query: 61 STCNVIK-------RNKS----SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
N+S + F + + I DL + +
Sbjct: 284 KLEGWKWAIDNTVPTNRSLKTKYIPGQSFVTVIDGFYVSPNIEIDYVKNIDL---NFEFT 340
Query: 110 THCPLTIEYDF 120
H P+ ++
Sbjct: 341 DHNPVILKITL 351
>gi|196047076|ref|ZP_03114294.1| sphingomyelin phosphodiesterase C [Bacillus cereus 03BB108]
gi|196022057|gb|EDX60746.1| sphingomyelin phosphodiesterase C [Bacillus cereus 03BB108]
Length = 333
Score = 37.9 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 32/137 (23%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N K NS + ++ +
Sbjct: 198 QLKEIQDFIKNKNIPNDEYVLFGGDMNVKKINAENNSDSEYASMFKTLHASIPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 317
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDY-SDHYPVEATISMK 333
>gi|86140867|ref|ZP_01059426.1| hypothetical protein MED217_16985 [Leeuwenhoekiella blandensis
MED217]
gi|85832809|gb|EAQ51258.1| hypothetical protein MED217_16985 [Leeuwenhoekiella blandensis
MED217]
Length = 315
Score = 37.9 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 17/124 (13%), Positives = 29/124 (23%), Gaps = 17/124 (13%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTD-DFWQKMDPDGLLIRFPQEKESTCNVIKR-NKSS 72
Q +I GDFN SI D + +
Sbjct: 191 QARDPEARILIMGDFNDDPQSIAVRDHLVSTDFYNPMVFLLTRYAGSLNHRGDWYLFDQI 250
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK---------------LSTHCPLTIE 117
+ + N L +I + + + + LS H P+
Sbjct: 251 ILSPNWMKAYDNPLEYEKSAIYNPEYLKEQEGKYRGNPLRTYAGDKYLGGLSDHFPVYTI 310
Query: 118 YDFE 121
+ E
Sbjct: 311 FKLE 314
>gi|307129015|ref|YP_003881031.1| Endonuclease/Exonuclease/phosphatase family protein [Dickeya
dadantii 3937]
gi|306526544|gb|ADM96474.1| Endonuclease/Exonuclease/phosphatase family protein [Dickeya
dadantii 3937]
Length = 380
Score = 37.9 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 29/123 (23%), Gaps = 22/123 (17%)
Query: 19 TGIPFVIAGDFNRKINSI-GDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS----- 72
V+ GD N + + + D + E K+
Sbjct: 256 QQEYVVVMGDLNEDVANPWHSLAPLFSVPDLHPAIDPSLPETARYTYYFSGGKAGERLNQ 315
Query: 73 LDYFVIDRDNKNFLIDNSFSIV-SYDQS---------------DLDTRRSKLSTHCPLTI 116
LDY I + Y+ + + + S H + +
Sbjct: 316 LDYIFISTPLHQAKVTCGIERRGIYNIDKITAKEGAEPVTPFPTVTSWDTAASDHAAVWV 375
Query: 117 EYD 119
E D
Sbjct: 376 ELD 378
>gi|262198893|ref|YP_003270102.1| endonuclease/exonuclease/phosphatase [Haliangium ochraceum DSM
14365]
gi|262082240|gb|ACY18209.1| Endonuclease/exonuclease/phosphatase [Haliangium ochraceum DSM
14365]
Length = 300
Score = 37.9 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 23/102 (22%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
P +AGD N + + G + GL+ F +E
Sbjct: 208 DQPIAVAGDLNTRPANAGI----VALLADTGLVDLFHEEGG----------------EPA 247
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
L + + + +D+ S H PL +E+D
Sbjct: 248 IYIDYVLASPPLAEIVRESVRVDSD---ASDHAPLWVEFDLS 286
>gi|171318391|ref|ZP_02907548.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria MEX-5]
gi|171096399|gb|EDT41299.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria MEX-5]
Length = 269
Score = 37.9 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 30/117 (25%), Gaps = 20/117 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + +++ +P ++ GD N + F + L+ RF +
Sbjct: 156 ERSAQ-VQRLLAAFDTGAMPVILMGDIN---------EWFVRGRALRALVTRFRRAPAPR 205
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I +V + R + S H PL
Sbjct: 206 TFPT---------LYPMFSLDRIWIHPGEWLVDVNVHR-SVRARRASDHYPLVARMR 252
>gi|150008138|ref|YP_001302881.1| hypothetical protein BDI_1504 [Parabacteroides distasonis ATCC
8503]
gi|149936562|gb|ABR43259.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
Length = 628
Score = 37.9 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 27/121 (22%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L ++ + P IAGD+N F ++ D +
Sbjct: 173 ILRREAAF----------AHKPLFIAGDWNATA-----HSPFITEISKDFQ---LLSNPK 214
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S LDY F+ +S + S H P+ E
Sbjct: 215 QATFPASTPDSCLDYI-----AGYVKNGQPFTRLSAWVPEEAV----ASDHRPVVTEVRL 265
Query: 121 E 121
+
Sbjct: 266 K 266
>gi|38346800|emb|CAD41368.2| OSJNBa0088A01.7 [Oryza sativa Japonica Group]
Length = 1324
Score = 37.9 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 21/125 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK- 59
+ +Q LK P+++ GDFN + ++ +
Sbjct: 576 IFLRQIRRLKP------ANNEPWLLFGDFNMIYRACDKSNSNINLRRMRRFRAAINHCEL 629
Query: 60 -------ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+R F + ++ +++ L T S S HC
Sbjct: 630 KEIHLQNRKFTWTNERRHP------TMVRLDRFFCNENWD-LAFGHHILHTLSSGTSDHC 682
Query: 113 PLTIE 117
PL +
Sbjct: 683 PLLLS 687
>gi|30260828|ref|NP_843205.1| sphingomyelinase C [Bacillus anthracis str. Ames]
gi|47777842|ref|YP_017307.2| sphingomyelinase C [Bacillus anthracis str. 'Ames Ancestor']
gi|228913366|ref|ZP_04076999.1| Sphingomyelinase C [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|228944428|ref|ZP_04106801.1| Sphingomyelinase C [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|30254277|gb|AAP24691.1| sphingomyelin phosphodiesterase C [Bacillus anthracis str. Ames]
gi|47551547|gb|AAT29782.2| sphingomyelin phosphodiesterase C [Bacillus anthracis str. 'Ames
Ancestor']
gi|228815330|gb|EEM61578.1| Sphingomyelinase C [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228846275|gb|EEM91294.1| Sphingomyelinase C [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
Length = 338
Score = 37.9 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 203 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 262
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 263 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 322
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 323 NDY-SDHYPVEATISMK 338
>gi|332520994|ref|ZP_08397454.1| Endonuclease/exonuclease/phosphatase [Lacinutrix algicola 5H-3-7-4]
gi|332043524|gb|EGI79720.1| Endonuclease/exonuclease/phosphatase [Lacinutrix algicola 5H-3-7-4]
Length = 339
Score = 37.9 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 11/98 (11%), Positives = 25/98 (25%), Gaps = 18/98 (18%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
+++GDFN + + + K + + +
Sbjct: 260 MIVSGDFN---------NTALSYVYKEIKGDLVDTFKAAGNGFGRTYN----FKFFPMRI 306
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
L + + T + S H P+ + F
Sbjct: 307 DFILTHP-----DFKINSFKTYDVEFSDHYPIMTKVSF 339
>gi|269140171|ref|YP_003296872.1| endonuclease/exonuclease/phosphatase [Edwardsiella tarda EIB202]
gi|267985832|gb|ACY85661.1| endonuclease/exonuclease/phosphatase [Edwardsiella tarda EIB202]
Length = 260
Score = 37.9 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q P ++AGDFN N ++++ + +E R +
Sbjct: 174 EQIALHKGPVIMAGDFNAWSN---------RRLNALRRFASGMELREVHFTNDHRRTAFG 224
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+++ S + + S H PL +E+
Sbjct: 225 RPLDFVFYRGLGVVEASVLVT------------QASDHNPLLVEFR 258
>gi|254719412|ref|ZP_05181223.1| Endonuclease/exonuclease/phosphatase family protein [Brucella sp.
83/13]
gi|265984415|ref|ZP_06097150.1| endonuclease/exonuclease/phosphatase [Brucella sp. 83/13]
gi|306839189|ref|ZP_07472006.1| Endonuclease/exonuclease/phosphatase family protein [Brucella sp.
NF 2653]
gi|264663007|gb|EEZ33268.1| endonuclease/exonuclease/phosphatase [Brucella sp. 83/13]
gi|306405736|gb|EFM61998.1| Endonuclease/exonuclease/phosphatase family protein [Brucella sp.
NF 2653]
Length = 369
Score = 37.9 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 14/158 (8%), Positives = 37/158 (23%), Gaps = 42/158 (26%)
Query: 5 QGEWLKKWADQKIK----TGIPFVIAGDFNRKINSI----GDTD------------DFWQ 44
+ +++ ++K ++I GDFN I + +
Sbjct: 211 EARAVRRIIEEKFGIDRVAERRWLICGDFNDYRERILIGGDEWNGYEFTPVMEEESALNV 270
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY-------- 96
+ + + + + L+ + D +
Sbjct: 271 LLGDGFAVNLVERRPVMDRWTLYHTRGPLERHLCQLDYIMASPAFAAKNEHAVPDIIRRG 330
Query: 97 -----------DQSDLDTRRS---KLSTHCPLTIEYDF 120
+ K S HCP+++ +
Sbjct: 331 QPWRTIFPPEQNVDRYPRTGWDRPKASDHCPVSVTLNM 368
>gi|242069221|ref|XP_002449887.1| hypothetical protein SORBIDRAFT_05g024920 [Sorghum bicolor]
gi|241935730|gb|EES08875.1| hypothetical protein SORBIDRAFT_05g024920 [Sorghum bicolor]
Length = 1022
Score = 37.9 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 17/109 (15%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTD--------DFWQKMDPDGLLIRFPQEKESTCNVIKR 68
G P++ GDFN + + +++ L+ + R
Sbjct: 326 QPRGRPWLCLGDFNLICEAQDKNNNNINRAHMRKFRQALDASELLEIKLQNRKYTWSNGR 385
Query: 69 NKSSLDYFVIDRD-NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+L + I S L S LS HCPL +
Sbjct: 386 KNPTLVHLDRAFCNLDWDEIFPSA--------TLIALSSSLSDHCPLFL 426
>gi|167587986|ref|ZP_02380374.1| Endonuclease/exonuclease/phosphatase [Burkholderia ubonensis Bu]
Length = 253
Score = 37.9 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 28/117 (23%), Gaps = 22/117 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
S+Q + L +P ++ GD N + + L+ RF +
Sbjct: 148 SEQVQRL---LAAFDTGAMPVILLGDIN---------EWLMRGRALRALVTRFRRAPAPR 195
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I ++ R + S H PL
Sbjct: 196 TFPT---------LYPLFALDRIWIHPGELLIDVAVHRSARAR-RASDHYPLVARMR 242
>gi|302762180|ref|XP_002964512.1| hypothetical protein SELMODRAFT_81439 [Selaginella moellendorffii]
gi|300168241|gb|EFJ34845.1| hypothetical protein SELMODRAFT_81439 [Selaginella moellendorffii]
Length = 540
Score = 37.9 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 17/165 (10%), Positives = 35/165 (21%), Gaps = 53/165 (32%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKI------------NSIGDTDDFWQKMDP-----D 49
+ L+ + +K G +I GD N ++ F +
Sbjct: 175 KVLQCRLESILKQGRRIIIVGDLNISPYPIDSCDPGPEFDTSPSRQWFRSLLVSEGGAFS 234
Query: 50 GLLIRFPQEKE-STCNVIK-------RNKSSLDYFVIDRDNKNFLIDNS----------- 90
F E+ + + S +D+ +I
Sbjct: 235 DAFRVFHPERAEAYTCWSQASGAEEFNYGSRIDHVLIAGPCAGHCQSPDGSHDNSSCDGF 294
Query: 91 -----------FSIVSYDQSDLDTR------RSKLSTHCPLTIEY 118
L + S H P+ ++
Sbjct: 295 AKCGTDMCDILLEFKRAKLDTLPRWSGGRSLKLDGSDHAPVILQL 339
>gi|147834770|emb|CAN72707.1| hypothetical protein VITISV_043786 [Vitis vinifera]
Length = 1372
Score = 37.9 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 17/107 (15%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD---------FWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
G P+ + GDFN + + F Q MD L+ Q S
Sbjct: 299 GDPWCVGGDFNVTLAQGERSRQGRVTSAMRRFAQVMDDLELIDLPLQG-GSFTWSGGLYN 357
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ + + + +S H P+TIE
Sbjct: 358 Q------AWARLDRFLVAPRW-LDQFSNVTQKRLSRPISDHFPITIE 397
>gi|147800480|emb|CAN68584.1| hypothetical protein VITISV_043904 [Vitis vinifera]
Length = 1283
Score = 37.9 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 17/107 (15%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD---------FWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
P+ + GDFN ++ F Q +D GL+ Q
Sbjct: 619 EEPWCVGGDFNVILSQRERNXQGRITATMRRFAQVIDELGLVDLPLQG-GGYTW------ 671
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
S FL+ + +S H P+ +E
Sbjct: 672 SGGPNNQSWARLDRFLVTPCWLDQFSSVI-QKRLSXPVSDHFPVLLE 717
>gi|77361734|ref|YP_341309.1| hypothetical protein PSHAa2830 [Pseudoalteromonas haloplanktis
TAC125]
gi|76876645|emb|CAI87867.1| conserved protein of unknown function [Pseudoalteromonas
haloplanktis TAC125]
Length = 284
Score = 37.9 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 29/116 (25%), Gaps = 21/116 (18%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ L+ + P + AGD N D QK+ D L +E
Sbjct: 188 AQQLQASIKIMQQHKGPILFAGDLNA-------WSDARQKLVNDALTKLGLKE------- 233
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
Y R L + SD S H P+ +
Sbjct: 234 -------AIYVDDKRTKAFGLALDQVWARGVVISDTLVSEYNSSDHNPILATLKVD 282
>gi|317047016|ref|YP_004114664.1| endonuclease/exonuclease/phosphatase [Pantoea sp. At-9b]
gi|316948633|gb|ADU68108.1| Endonuclease/exonuclease/phosphatase [Pantoea sp. At-9b]
Length = 264
Score = 37.9 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q P ++AGDFN Q+M + +E T R K+
Sbjct: 176 EQIQYHRGPVIMAGDFNA---------WSRQRMRALFRFAQDMALQEVTFTDDHRRKAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E++
Sbjct: 227 RPLDFVFYRDMKVSEASVLVT------------RASDHNPLLVEFN 260
>gi|225852859|ref|YP_002733092.1| endonuclease/exonuclease/phosphatase [Brucella melitensis ATCC
23457]
gi|256263656|ref|ZP_05466188.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 2
str. 63/9]
gi|225641224|gb|ACO01138.1| Endonuclease/exonuclease/phosphatase [Brucella melitensis ATCC
23457]
gi|263093710|gb|EEZ17715.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 2
str. 63/9]
gi|326409399|gb|ADZ66464.1| endonuclease/exonuclease/phosphatase [Brucella melitensis M28]
Length = 369
Score = 37.9 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 15/158 (9%), Positives = 38/158 (24%), Gaps = 42/158 (26%)
Query: 5 QGEWLKKWADQKIK----TGIPFVIAGDFNRKINSI----GDTD------------DFWQ 44
+ +++ ++K T ++I GDFN I + +
Sbjct: 211 EARAIRRIIEEKFGIDRVTERRWLICGDFNDYRERILIGGDEWNGYEFTPVMEEESALNV 270
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY-------- 96
+ + + + + L+ + D +
Sbjct: 271 LLGDGFAVNLVERRPVMDRWTLYHTRGPLERHLCQLDYIMASPAFAAKNEHAVPDIIRRG 330
Query: 97 -----------DQSDLDTRRS---KLSTHCPLTIEYDF 120
+ K S HCP+++ +
Sbjct: 331 QPWRTIFPPEQNVDRYPRTGWDRPKASDHCPVSVTLNM 368
>gi|221198087|ref|ZP_03571133.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD2M]
gi|221204354|ref|ZP_03577371.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD2]
gi|221175211|gb|EEE07641.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD2]
gi|221182019|gb|EEE14420.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD2M]
Length = 285
Score = 37.9 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 11/101 (10%), Positives = 25/101 (24%), Gaps = 1/101 (0%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
++ GDFN +S + +D + +
Sbjct: 184 AQSRDAILCGDFNSAFDSTAYRR-MLEPIDGAPAFVDAWIAQHPGRTPPPTAGVYDTAQW 242
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
D + +++ + S H P+ +E
Sbjct: 243 SDGPLACDFAFVTDTLLPRLARCEIDGAVRASDHQPIVLEL 283
>gi|212532511|ref|XP_002146412.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Penicillium marneffei ATCC 18224]
gi|210071776|gb|EEA25865.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Penicillium marneffei ATCC 18224]
Length = 1124
Score = 37.9 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 34/128 (26%), Gaps = 17/128 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLIRFPQEKEST 62
L+ ++ I+ + GDFN +I + + K+ L +
Sbjct: 780 LRFRYNRTIEDHDAIIWLGDFNYRIGLDNQEVRQLIKNHEFGKLYEHDQLNLQMLAGRTF 839
Query: 63 CN---------VIKRNKSSLDYFVIDR--DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ D + + + Q D K S H
Sbjct: 840 PFYSEGLIRFAPTYKYDLGTDNYDTSDKGRIPAWCDRVLWKGGGLKQIDYAAANIKTSDH 899
Query: 112 CPLTIEYD 119
P++ +D
Sbjct: 900 RPVSSLFD 907
>gi|187735113|ref|YP_001877225.1| Endonuclease/exonuclease/phosphatase [Akkermansia muciniphila ATCC
BAA-835]
gi|187425165|gb|ACD04444.1| Endonuclease/exonuclease/phosphatase [Akkermansia muciniphila ATCC
BAA-835]
Length = 253
Score = 37.9 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 23/101 (22%), Gaps = 18/101 (17%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
PF IAGDFN +S T + +
Sbjct: 170 KPFFIAGDFNLTPDSEPITRMKKYFILLSDPAQKTFPAGH-----------------PKE 212
Query: 81 DNKNFLIDNSFSIVSYDQSDLDT-RRSKLSTHCPLTIEYDF 120
+ ++ + S H P+ + +
Sbjct: 213 CIDYIWMYRGKKTEAFHVKERRVIEAPAASDHRPVKVTVSY 253
>gi|327538463|gb|EGF25127.1| endonuclease/exonuclease/phosphatase [Rhodopirellula baltica WH47]
Length = 406
Score = 37.9 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 1/107 (0%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ FVIAGD N + + + + +
Sbjct: 296 LESDSTADAMFVIAGDLNSDPKQGDSLRSGIANLISNPCVRDAMPTSSQHGISTAKFGRN 355
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N + S + Q+DL +R + + H + I+ +
Sbjct: 356 EIRVDYVLPSSNLHVIRSAVVWPDAQTDL-GKRVRATDHRMVWIDIE 401
>gi|298376245|ref|ZP_06986201.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
gi|298267282|gb|EFI08939.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 3_1_19]
Length = 304
Score = 37.9 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 32/127 (25%), Gaps = 19/127 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKI--------NSIGDTDD--------FWQKMDPDGLLIRFP 56
Q +K G P + GDFN + ++ +
Sbjct: 178 IQQVMKEGYPVFLTGDFNEPSFLDWTQRAADADIHKIKVEWPATKAFSEIGMNDSYRTIH 237
Query: 57 QE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ ++ + + + +SF + + S H
Sbjct: 238 PDEVSTPGYTWTPVPSEQEILDRLDFVLYSGCKVTDSFITGESEATSDVVVSPYPSDHRM 297
Query: 114 LTIEYDF 120
+T ++F
Sbjct: 298 VTSCFNF 304
>gi|263173339|gb|ACY69916.1| salivary nitrophorin [Cimex lectularius]
Length = 214
Score = 37.9 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
F EKES KR S D + + + + K S H P+
Sbjct: 157 FKYEKESDTYSDKRRPSWTDRVLYKSETQKTITSK----------KYQRLEHKYSDHRPV 206
Query: 115 TIEYDFE 121
T E+ +
Sbjct: 207 TAEFTIK 213
>gi|225431035|ref|XP_002273445.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 701
Score = 37.9 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 15/105 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ I GDFN ++ + + ++ D LI P + RN
Sbjct: 207 DEPWCIGGDFNVTLSQRDRSRQGSLNGAMRRFAQVVDDLALIDLPLQGGVYSWSGGRNNQ 266
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
FL+ + + + + S H P+ +
Sbjct: 267 ------TWARLDRFLVSQGWLDI-FRGAVQCRLPRPTSDHFPILL 304
>gi|319399906|gb|EFV88152.1| sphingomyelin phosphodiesterase [Staphylococcus epidermidis FRI909]
Length = 327
Score = 37.9 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 29/129 (22%), Gaps = 14/129 (10%)
Query: 1 MLSQQGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK---MDPDGLLIRFP 56
+ Q +K++ D+ I P I GD N +S + +
Sbjct: 193 IRQSQMSEIKQFIKDKNIPKNEPVYIGGDLNVIKDSEEYQQMANNLNVSLPTQFDGNAYS 252
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------- 108
+ S + S + K
Sbjct: 253 WDTSSNSIAKYNYPKLEPQHLDYILLDRDHAQPSSWHNDTHRVKSPEWSVKSWGKTYKYN 312
Query: 109 --STHCPLT 115
S H PL+
Sbjct: 313 DYSDHYPLS 321
>gi|291616783|ref|YP_003519525.1| YbhP [Pantoea ananatis LMG 20103]
gi|291151813|gb|ADD76397.1| YbhP [Pantoea ananatis LMG 20103]
Length = 265
Score = 37.9 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 32/116 (27%), Gaps = 15/116 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + + P V+AGDFN K+ G ++ +
Sbjct: 165 QMTMLNEMVLA-LPPDAPVVVAGDFND-------WQGRANKILQKGAGLKEVFSIKHG-- 214
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + N+ + S LS H PL +E
Sbjct: 215 ---RPARTFPARFPLLRLDRIYVRNATVSHPWALPRKPW--SHLSDHAPLAVEIHL 265
>gi|270263400|ref|ZP_06191669.1| putative endonuclease/exonuclease/phosphatase family protein
[Serratia odorifera 4Rx13]
gi|270042284|gb|EFA15379.1| putative endonuclease/exonuclease/phosphatase family protein
[Serratia odorifera 4Rx13]
Length = 257
Score = 37.9 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 21/105 (20%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q P ++AGDFN ++++ +E R K+
Sbjct: 165 EQIANHHGPVIMAGDFNA---------WSRKRINALYQFASDMALREVNFTDDHRRKAFG 215
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S + S S H PL +E+
Sbjct: 216 RPLDFVFYRNMGVAEASVLVTSA------------SDHNPLLVEF 248
>gi|254580459|ref|XP_002496215.1| ZYRO0C13222p [Zygosaccharomyces rouxii]
gi|238939106|emb|CAR27282.1| ZYRO0C13222p [Zygosaccharomyces rouxii]
Length = 500
Score = 37.9 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 11/98 (11%), Positives = 29/98 (29%), Gaps = 5/98 (5%)
Query: 29 FNRKINSIGDTDDFWQK-MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLI 87
FN+ ++ ++ + + L + + + S + D
Sbjct: 272 FNQMLSDSMFSEMALEGVLIDTTRLKQSRKRLKMYTVWNTFKNSRPANYGSRIDFVLTST 331
Query: 88 DNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
+ S + S HCP+ + ++ +V
Sbjct: 332 RMGVQVQSANILPQVMG----SDHCPVYADIIYDPSDV 365
>gi|149187109|ref|ZP_01865414.1| metal-dependent hydrolase [Erythrobacter sp. SD-21]
gi|148829261|gb|EDL47707.1| metal-dependent hydrolase [Erythrobacter sp. SD-21]
Length = 233
Score = 37.9 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 35/121 (28%), Gaps = 22/121 (18%)
Query: 2 LSQ--QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
L + Q L + +K +P VI GDFN+ + G +F + +P +
Sbjct: 130 LRRRDQIRSLVGFV-EKCSRNLPTVIMGDFNQWGRATGAMREFSDRWLVVTPGRSYPSRQ 188
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + V + + S S H P+ D
Sbjct: 189 PVAT------------------LDRIVASKHWGCVEAEVH-HTGQSSVASDHLPVVATLD 229
Query: 120 F 120
Sbjct: 230 L 230
>gi|153207659|ref|ZP_01946323.1| endonuclease/exonuclease/phosphatase family protein [Coxiella
burnetii 'MSU Goat Q177']
gi|212218503|ref|YP_002305290.1| endonuclease/Exonuclease/phosphatase family protein [Coxiella
burnetii CbuK_Q154]
gi|120576478|gb|EAX33102.1| endonuclease/exonuclease/phosphatase family protein [Coxiella
burnetii 'MSU Goat Q177']
gi|212012765|gb|ACJ20145.1| endonuclease/Exonuclease/phosphatase family protein [Coxiella
burnetii CbuK_Q154]
Length = 255
Score = 37.9 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 14/117 (11%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L K + + + P +IAGDFN G + ++++ + + K +
Sbjct: 153 QLITLIKRIEAHVPSHAPLIIAGDFNDWR--RGAFNYMEKELELKEVYKVL-EGKHAKTY 209
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
R +D L+ SY KLS H PL ++ E
Sbjct: 210 PASRPTLEVDRIYYRG---LKLLSGEIFNESY--------WKKLSDHLPLHAKFAIE 255
>gi|118476360|ref|YP_893511.1| sphingomyelin phosphodiesterase [Bacillus thuringiensis str. Al
Hakam]
gi|118415585|gb|ABK84004.1| sphingomyelin phosphodiesterase [Bacillus thuringiensis str. Al
Hakam]
Length = 378
Score = 37.9 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 32/137 (23%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N K NS + ++ +
Sbjct: 243 QLKEIQDFIKNKNIPNDEYVLFGGDMNVKKINAENNSDSEYASMFKTLHASIPSYTGHTA 302
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 303 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 362
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 363 NDY-SDHYPVEATISMK 378
>gi|51597284|ref|YP_071475.1| hypothetical protein YPTB2969 [Yersinia pseudotuberculosis IP
32953]
gi|108806552|ref|YP_650468.1| hypothetical protein YPA_0555 [Yersinia pestis Antiqua]
gi|108813081|ref|YP_648848.1| hypothetical protein YPN_2921 [Yersinia pestis Nepal516]
gi|145598917|ref|YP_001162993.1| hypothetical protein YPDSF_1635 [Yersinia pestis Pestoides F]
gi|162418419|ref|YP_001607088.1| hypothetical protein YpAngola_A2687 [Yersinia pestis Angola]
gi|165924486|ref|ZP_02220318.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis biovar Orientalis str. F1991016]
gi|165938315|ref|ZP_02226873.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis biovar Orientalis str. IP275]
gi|166011978|ref|ZP_02232876.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166211717|ref|ZP_02237752.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis biovar Antiqua str. B42003004]
gi|167419440|ref|ZP_02311193.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167424233|ref|ZP_02315986.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|167470216|ref|ZP_02334920.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis FV-1]
gi|170023350|ref|YP_001719855.1| hypothetical protein YPK_1104 [Yersinia pseudotuberculosis YPIII]
gi|186896389|ref|YP_001873501.1| hypothetical protein YPTS_3087 [Yersinia pseudotuberculosis PB1/+]
gi|229895469|ref|ZP_04510641.1| hypothetical protein YPS_3256 [Yersinia pestis Pestoides A]
gi|270487305|ref|ZP_06204379.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis KIM D27]
gi|294503093|ref|YP_003567155.1| hypothetical protein YPZ3_0983 [Yersinia pestis Z176003]
gi|51590566|emb|CAH22207.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108776729|gb|ABG19248.1| hypothetical protein YPN_2921 [Yersinia pestis Nepal516]
gi|108778465|gb|ABG12523.1| hypothetical protein YPA_0555 [Yersinia pestis Antiqua]
gi|145210613|gb|ABP40020.1| hypothetical protein YPDSF_1635 [Yersinia pestis Pestoides F]
gi|162351234|gb|ABX85182.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis Angola]
gi|165913693|gb|EDR32312.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis biovar Orientalis str. IP275]
gi|165923546|gb|EDR40678.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis biovar Orientalis str. F1991016]
gi|165989145|gb|EDR41446.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166207488|gb|EDR51968.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis biovar Antiqua str. B42003004]
gi|166962181|gb|EDR58202.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167057082|gb|EDR66845.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|169749884|gb|ACA67402.1| Endonuclease/exonuclease/phosphatase [Yersinia pseudotuberculosis
YPIII]
gi|186699415|gb|ACC90044.1| Endonuclease/exonuclease/phosphatase [Yersinia pseudotuberculosis
PB1/+]
gi|229701624|gb|EEO89651.1| hypothetical protein YPS_3256 [Yersinia pestis Pestoides A]
gi|262361130|gb|ACY57851.1| hypothetical protein YPD4_0942 [Yersinia pestis D106004]
gi|262365372|gb|ACY61929.1| hypothetical protein YPD8_1244 [Yersinia pestis D182038]
gi|270335809|gb|EFA46586.1| endonuclease/exonuclease/phosphatase family protein [Yersinia
pestis KIM D27]
gi|294353552|gb|ADE63893.1| hypothetical protein YPZ3_0983 [Yersinia pestis Z176003]
Length = 253
Score = 37.9 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN Q+++ + +E V R+++
Sbjct: 168 DQIASHRGPVILAGDFNA---------WSRQRINALQHFAQDAGLQEVEFRVDHRSRAFG 218
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D ++ S H PL +E+
Sbjct: 219 RPL------------DFIFYRGLTVIDASVLVTRASDHNPLIVEFQ 252
>gi|323138553|ref|ZP_08073621.1| Endonuclease/exonuclease/phosphatase [Methylocystis sp. ATCC 49242]
gi|322396187|gb|EFX98720.1| Endonuclease/exonuclease/phosphatase [Methylocystis sp. ATCC 49242]
Length = 319
Score = 37.9 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 35/128 (27%), Gaps = 10/128 (7%)
Query: 2 LSQQGEWLKKWADQK----IKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRF 55
L ++G+ L+ + + I GDFN + + + +
Sbjct: 189 LKREGQALEARLFAETIFDAEPDALLAICGDFNADEHDAPTRLLRGGRDEGEDAPRALLA 248
Query: 56 PQEKES----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+E+ + + + +D+ + + S H
Sbjct: 249 LEERVAPASRYTVIHAGRPTLIDHILASHALAAMWRSTAILNAGLQDEFYAKDPIDGSLH 308
Query: 112 CPLTIEYD 119
P+ ++
Sbjct: 309 APVMAMFE 316
>gi|270010058|gb|EFA06506.1| hypothetical protein TcasGA2_TC009405 [Tribolium castaneum]
Length = 983
Score = 37.9 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 11/91 (12%), Positives = 25/91 (27%), Gaps = 20/91 (21%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------------ 48
E +K+ + + P +I GD N I +
Sbjct: 894 EQFEKFIK-NLDSQKPVIICGDMNVAHKEIDLANPKTNTNSAGFSVEERDGMTAFLGNGY 952
Query: 49 -DGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
D +P+++++ I + +
Sbjct: 953 VDIYRHLYPEKEKAYTFWIYMRNARPNNVGW 983
>gi|254694063|ref|ZP_05155891.1| Endonuclease/exonuclease/phosphatase [Brucella abortus bv. 3 str.
Tulya]
gi|261214359|ref|ZP_05928640.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 3 str.
Tulya]
gi|260915966|gb|EEX82827.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 3 str.
Tulya]
Length = 369
Score = 37.9 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 15/158 (9%), Positives = 38/158 (24%), Gaps = 42/158 (26%)
Query: 5 QGEWLKKWADQKIK----TGIPFVIAGDFNRKINSI----GDTD------------DFWQ 44
+ +++ ++K T ++I GDFN I + +
Sbjct: 211 EARAIRRIIEEKFGIDRVTERRWLICGDFNDYRERILIGGDEWNGYEFTPVMEEESALNV 270
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY-------- 96
+ + + + + L+ + D +
Sbjct: 271 LLGDGFAVNLVERRPVMDRWTLYHTRGPLERHLCQLDYIMASPAFAAKNEHAVPDIIRRG 330
Query: 97 -----------DQSDLDTRRS---KLSTHCPLTIEYDF 120
+ K S HCP+++ +
Sbjct: 331 QPWRTIFPPEQNVDRYPRTGWDRPKASDHCPVSVTLNM 368
>gi|82408358|gb|ABB73028.1| mannose-6-phosphatase [Phanerochaete chrysosporium]
Length = 354
Score = 37.9 bits (86), Expect = 0.54, Method: Composition-based stats.
Identities = 18/140 (12%), Positives = 28/140 (20%), Gaps = 28/140 (20%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKIN---------------SIGDTDDFWQKM-------- 46
+ + G P ++ GDFN F Q
Sbjct: 215 RARFEAFHSQGGPVIVTGDFNSPSTGTDSGAYMIATGALPPEPINATFAQTFAVPNGTLT 274
Query: 47 ---DPDGLLIRFPQEKESTCNVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
D S D D + ++ Y
Sbjct: 275 NFVLDDLKAKAPRANVGGNFATFTGFNSPGDTASFTRIDFVFGGSNGKWTATQYKVGTSL 334
Query: 103 TRRSKL-STHCPLTIEYDFE 121
T L S H P+ + +
Sbjct: 335 TDDGVLASDHRPVFADITLQ 354
>gi|228989540|ref|ZP_04149525.1| Endonuclease/exonuclease/phosphatase [Bacillus pseudomycoides DSM
12442]
gi|229003360|ref|ZP_04161190.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides Rock1-4]
gi|228757978|gb|EEM07193.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides Rock1-4]
gi|228770265|gb|EEM18844.1| Endonuclease/exonuclease/phosphatase [Bacillus pseudomycoides DSM
12442]
Length = 263
Score = 37.5 bits (85), Expect = 0.55, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 6/109 (5%)
Query: 13 ADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
Q + ++ GDFN ++ G + + L E +
Sbjct: 158 LTQHVNENELSILMGDFNNNARLQGEGYDYLMQKGLYDTYELAFKKDEGTTVQ----GKI 213
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + +++S R+ +S H + ++ D
Sbjct: 214 AGWDENKQNLRIDLILSNKPKTVISSKVIFNGINRNIISDHFGVEVQLD 262
>gi|218662414|ref|ZP_03518344.1| putative endonuclease/exonuclease/phosphatase family protein
[Rhizobium etli IE4771]
Length = 357
Score = 37.5 bits (85), Expect = 0.55, Method: Composition-based stats.
Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 7/85 (8%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY----DQS 99
Q +D L +++ C + S + + + +
Sbjct: 273 QPLDRWTLYHTRGPQEQHLCQLDYIWLSPALAAHNSGRLPEIIRNGQPFRTVFPPGQEVE 332
Query: 100 DLDTRRS---KLSTHCPLTIEYDFE 121
K S HCP+ + D
Sbjct: 333 RYPRTGWDRPKASDHCPVVMTLDLP 357
>gi|209737394|gb|ACI69566.1| Deoxyribonuclease gamma precursor [Salmo salar]
Length = 274
Score = 37.5 bits (85), Expect = 0.55, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 2/100 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+I GDFN + + ++ D ++ T + + +
Sbjct: 161 DNVMILGDFNADGSYLSKKAMKAIRIRSDKNFHWLIKDDVDTTANTGNDNTYDRIVIYGV 220
Query: 81 DNKNFLIDNSFSIVSYDQSD--LDTRRSKLSTHCPLTIEY 118
D N L+ N + + + K+S P+ +E
Sbjct: 221 DMLNALVPNFAKPFNLQIAYGLFEEDALKVSDPFPVGVEL 260
>gi|153008655|ref|YP_001369870.1| endonuclease/exonuclease/phosphatase [Ochrobactrum anthropi ATCC
49188]
gi|151560543|gb|ABS14041.1| Endonuclease/exonuclease/phosphatase [Ochrobactrum anthropi ATCC
49188]
Length = 285
Score = 37.5 bits (85), Expect = 0.55, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 28/121 (23%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + + +P ++ GD N + + +
Sbjct: 167 EQQAESILTALQE--ADTVPTLLIGDLN-------EWRIGKRSSLAALMPTFNHVATAVP 217
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L + S + + R S H P+ D +
Sbjct: 218 SFPSR---------FPVFALDRVLGAPHNLVTSVEVHNTPLARL-ASDHLPIKAHLDLKS 267
Query: 123 G 123
Sbjct: 268 A 268
>gi|263173336|gb|ACY69915.1| salivary nitrophorin [Cimex lectularius]
Length = 227
Score = 37.5 bits (85), Expect = 0.55, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
F EKES KR S D + + + + K S H P+
Sbjct: 170 FKYEKESDTYSDKRRPSWTDRVLYKSETQQTITSK----------KYQRLEHKYSDHRPV 219
Query: 115 TIEYDFE 121
T E+ +
Sbjct: 220 TAEFTIK 226
>gi|255085722|ref|XP_002505292.1| predicted protein [Micromonas sp. RCC299]
gi|226520561|gb|ACO66550.1| predicted protein [Micromonas sp. RCC299]
Length = 337
Score = 37.5 bits (85), Expect = 0.55, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 24/137 (17%), Gaps = 25/137 (18%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV-- 65
L Q+ +P ++ GDFN K G + D P E
Sbjct: 200 QLAAMYAQQQSGNLPVILMGDFNLKPGDGGYDLITTGTLASDHEAAPVPPAGEEWSTSLK 259
Query: 66 ----------------IKRNKSSLDYFVIDRDNKNFLIDNSFS-------IVSYDQSDLD 102
D I +
Sbjct: 260 YPMRSAYKVANGAEPDFTNFAQIKDDPQFIDTLDYIFISPKIEVAEVLQLPHRSEVKGPF 319
Query: 103 TRRSKLSTHCPLTIEYD 119
+ S H L
Sbjct: 320 PAPDEPSDHILLAATLR 336
>gi|119898900|ref|YP_934113.1| endonuclease/exonuclease/phosphatase family protein [Azoarcus sp.
BH72]
gi|119671313|emb|CAL95226.1| conserved hypothetical endonuclease/exonuclease/phosphatase family
protein [Azoarcus sp. BH72]
Length = 323
Score = 37.5 bits (85), Expect = 0.55, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 39/124 (31%), Gaps = 12/124 (9%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-------MDPDGLLIRFPQE 58
+W+ + + T ++ GDFN + + D +
Sbjct: 185 AQWIDVFRQSEQATTRDLIVVGDFNIPSRRSALFKAITRYGLHVPKALLADTFGSNLARN 244
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS-----IVSYDQSDLDTRRSKLSTHCP 113
K + +++ D F +F + ++ + +D +LS H P
Sbjct: 245 KRYDQILQYPSEAYPDSFADKGGVLDFHVSDALVGELFPPELFPTMTMDKYTYQLSDHLP 304
Query: 114 LTIE 117
L I+
Sbjct: 305 LWIQ 308
>gi|311280826|ref|YP_003943057.1| Endonuclease/exonuclease/phosphatase [Enterobacter cloacae SCF1]
gi|308750021|gb|ADO49773.1| Endonuclease/exonuclease/phosphatase [Enterobacter cloacae SCF1]
Length = 259
Score = 37.5 bits (85), Expect = 0.56, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + R ++
Sbjct: 169 DQIAHHSGPVIMAGDFNAW--SRPRMNALYRFAREMSLREVRFTD-------DHRRRAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + D ++ S H PL +E+
Sbjct: 220 RPL------------DFVFYRGLNVHDASVLVTRASDHNPLLVEFS 253
>gi|298682280|gb|ADI95343.1| endonuclease/exonuclease/phosphatase [Pseudomonas putida]
Length = 170
Score = 37.5 bits (85), Expect = 0.56, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 21/118 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + + P +IAGDFN + + L F S
Sbjct: 74 QRQVKLMLDLLAS-LPPNAPVIIAGDFND-------WRLKADAVLSEHLTEAFGTPARSF 125
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + N+ + S S LS H PL E +
Sbjct: 126 P-----------ARLPLLRLDRIYLRNAMPGAAQVLSKYPW--SHLSDHVPLAAEINL 170
>gi|302804837|ref|XP_002984170.1| hypothetical protein SELMODRAFT_119685 [Selaginella moellendorffii]
gi|300148019|gb|EFJ14680.1| hypothetical protein SELMODRAFT_119685 [Selaginella moellendorffii]
Length = 562
Score = 37.5 bits (85), Expect = 0.56, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 27/126 (21%), Gaps = 22/126 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF------WQKMDPDGLLIRFPQEKESTCNV--- 65
+ I + GD N +I WQ + L
Sbjct: 278 ETIMGHDRIIWLGDLNYRIALPDAQTRLLISRRDWQTLLRRDQLRTEKMAGRVFDGWQEG 337
Query: 66 -------------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
R L R + + Q + S+ S H
Sbjct: 338 CIEFPPTYKYVINSDRYSGLLLKAGEKRRTPAWCDRILWYGKGLRQLEYRRSESRFSDHR 397
Query: 113 PLTIEY 118
P++ +
Sbjct: 398 PVSAVF 403
>gi|262381285|ref|ZP_06074423.1| metallophosphoesterase [Bacteroides sp. 2_1_33B]
gi|262296462|gb|EEY84392.1| metallophosphoesterase [Bacteroides sp. 2_1_33B]
Length = 628
Score = 37.5 bits (85), Expect = 0.56, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 27/121 (22%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L ++ + P IAGD+N F ++ D +
Sbjct: 173 ILRREAAF----------AHKPLFIAGDWNATA-----HSPFITEISKDFQ---LLSNPK 214
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S LDY F+ +S + S H P+ E
Sbjct: 215 QATFPASTPDSCLDYI-----AGYVKNGQPFTRLSAWVPEEAV----ASDHRPVVTEVRL 265
Query: 121 E 121
+
Sbjct: 266 K 266
>gi|254702100|ref|ZP_05163928.1| Endonuclease/exonuclease/phosphatase family protein [Brucella suis
bv. 5 str. 513]
gi|261752670|ref|ZP_05996379.1| endonuclease/exonuclease/phosphatase [Brucella suis bv. 5 str. 513]
gi|261742423|gb|EEY30349.1| endonuclease/exonuclease/phosphatase [Brucella suis bv. 5 str. 513]
Length = 369
Score = 37.5 bits (85), Expect = 0.56, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 39/158 (24%), Gaps = 42/158 (26%)
Query: 5 QGEWLKKWADQKIK----TGIPFVIAGDFNRKINSIGDTDDFWQK--------------- 45
+ +++ ++K T ++I GDFN I D W
Sbjct: 211 EARAIRRIIEEKFGIDRVTERRWLICGDFNDYRERILIGGDEWNGYEFTPVMEEESALNV 270
Query: 46 ----------------MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
MD L + C + S + + +
Sbjct: 271 LLGDGFAVNLVERRPVMDRWTLYHTRGPLERHLCQLDYIMASPAFAAKNEHAVPDIIRRG 330
Query: 90 SFSIVSY----DQSDLDTRRS---KLSTHCPLTIEYDF 120
+ + K S HCP+++ +
Sbjct: 331 QPWRTIFPPEQNVDRYPRTGWDRPKASDHCPVSVTLNM 368
>gi|224097494|ref|XP_002310959.1| predicted protein [Populus trichocarpa]
gi|222850779|gb|EEE88326.1| predicted protein [Populus trichocarpa]
Length = 493
Score = 37.5 bits (85), Expect = 0.56, Method: Composition-based stats.
Identities = 13/129 (10%), Positives = 24/129 (18%), Gaps = 22/129 (17%)
Query: 12 WADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDP--------------------D 49
+KI + GD N ++ Q
Sbjct: 353 RIPEKIMEHDRVIWLGDLNYRIALSYSETRRLLEQYNWDTLLDKDQLKIQREAGQVFRGW 412
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R + + Q R S+ S
Sbjct: 413 KEGEIYFAPTYKYSYNSDIYAGETIETQKKRRTPAWCDRILWYGDGIRQLSYVRRESRFS 472
Query: 110 THCPLTIEY 118
H P+ ++
Sbjct: 473 DHRPVCAKF 481
>gi|86358327|ref|YP_470219.1| putative endonuclease/exonuclease/phosphatase family protein
[Rhizobium etli CFN 42]
gi|86282429|gb|ABC91492.1| putative endonuclease/exonuclease/phosphatase family protein
[Rhizobium etli CFN 42]
Length = 369
Score = 37.5 bits (85), Expect = 0.56, Method: Composition-based stats.
Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 7/85 (8%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY----DQS 99
Q +D L +++ C + S + + + +
Sbjct: 285 QPLDRWTLYHARGPQEQHLCQLDYIWLSPALAAHNSGRVPEIIRNGQPYRTVFPPGQEVE 344
Query: 100 DLDTRRS---KLSTHCPLTIEYDFE 121
K S HCP+ + D
Sbjct: 345 RYPRTGWDRPKASDHCPVVMTLDLP 369
>gi|49183669|ref|YP_026921.1| sphingomyelinase C [Bacillus anthracis str. Sterne]
gi|49177596|gb|AAT52972.1| sphingomyelinase C [Bacillus anthracis str. Sterne]
Length = 378
Score = 37.5 bits (85), Expect = 0.56, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 243 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 302
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 303 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 362
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 363 NDY-SDHYPVEATISMK 378
>gi|84496098|ref|ZP_00994952.1| hypothetical protein JNB_01225 [Janibacter sp. HTCC2649]
gi|84382866|gb|EAP98747.1| hypothetical protein JNB_01225 [Janibacter sp. HTCC2649]
Length = 326
Score = 37.5 bits (85), Expect = 0.56, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 28/117 (23%), Gaps = 17/117 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W ++ P V+AGDFN +D + +
Sbjct: 225 RQLGQAADWVSEQ-PEQTPLVLAGDFNASQAHPAYRRLAEGMVDAQ---------RATGS 274
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++ + L+ + + D + H +
Sbjct: 275 GWVRTWPQGS-GIPAFVQLDHVLVRHG------NVVDAGMSVVPGTDHALVWARLAL 324
>gi|295133317|ref|YP_003583993.1| endonuclease/Exonuclease/phosphatase family protein [Zunongwangia
profunda SM-A87]
gi|294981332|gb|ADF51797.1| endonuclease/Exonuclease/phosphatase family protein [Zunongwangia
profunda SM-A87]
Length = 349
Score = 37.5 bits (85), Expect = 0.56, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 32/117 (27%), Gaps = 20/117 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E +K+ D + P +I+GDFN S + +K + +
Sbjct: 252 QSERVKRSID---SSEYPVIISGDFNNTAFSYTYNQV------RNDRFQDAFVKKGAGFS 302
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ + + + S H P+ + +
Sbjct: 303 STYNLNYFPLRIDFH-----------LLDTVFEINSYERIKVPYSDHYPILTTFSIK 348
>gi|229159517|ref|ZP_04287533.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus R309803]
gi|228623974|gb|EEK80784.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus R309803]
Length = 247
Score = 37.5 bits (85), Expect = 0.56, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + + GDFN ++ G + + L ++ ++
Sbjct: 140 DRLMERVDSNALAFLMGDFNNNARLEGEGYEYTMQKGLYDTYELAI----EKDEGTTVQG 195
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + ++ S R+ +S H + ++ D
Sbjct: 196 KIAGWDENKHNLRIDLILCNQGKTVRSSKVIFNGINRNVISDHFGVEVQLD 246
>gi|190892451|ref|YP_001978993.1| endonuclease/exonuclease/phosphatase family protein [Rhizobium etli
CIAT 652]
gi|190697730|gb|ACE91815.1| putative endonuclease/exonuclease/phosphatase family protein
[Rhizobium etli CIAT 652]
Length = 369
Score = 37.5 bits (85), Expect = 0.57, Method: Composition-based stats.
Identities = 11/85 (12%), Positives = 21/85 (24%), Gaps = 7/85 (8%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY----DQS 99
Q +D L +++ C + S + + +
Sbjct: 285 QPLDRWTLYHARGPQEQHLCQLDYIWLSPALAAHNSGRLPEIIRKGQPYRTVFPPGQEVE 344
Query: 100 DLDTRRS---KLSTHCPLTIEYDFE 121
K S HCP+ + D
Sbjct: 345 RYPRTGWDRPKASDHCPVVMTLDLP 369
>gi|108797902|ref|YP_638099.1| endonuclease/exonuclease/phosphatase [Mycobacterium sp. MCS]
gi|119866997|ref|YP_936949.1| endonuclease/exonuclease/phosphatase [Mycobacterium sp. KMS]
gi|108768321|gb|ABG07043.1| Endonuclease/exonuclease/phosphatase [Mycobacterium sp. MCS]
gi|119693086|gb|ABL90159.1| Endonuclease/exonuclease/phosphatase [Mycobacterium sp. KMS]
Length = 330
Score = 37.5 bits (85), Expect = 0.57, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 25/110 (22%), Gaps = 17/110 (15%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L +A ++AGDFN + D + +G Q
Sbjct: 229 LNDFAKT--AGAGAVIVAGDFNSTPDMRQFRD-----LLTNGYRDAVEQTGAGLGPTFPS 281
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
ID +S V K S H L
Sbjct: 282 YGWFRPLITIDHVLTRNAAASSIKTV----------DMKGSDHRALLATI 321
>gi|83593356|ref|YP_427108.1| endonuclease/exonuclease/phosphatase [Rhodospirillum rubrum ATCC
11170]
gi|83576270|gb|ABC22821.1| Endonuclease/exonuclease/phosphatase [Rhodospirillum rubrum ATCC
11170]
Length = 246
Score = 37.5 bits (85), Expect = 0.57, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 18/117 (15%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIG------DTDDFWQKMDPD---GLLIRFPQEKESTC 63
A + + P ++ GDFN + I + F +M+ L E
Sbjct: 134 AAARRREASPTLVIGDFNTGKHFIDEKGTSLVSAPFMNRMEEAGFVDLWRARNPEGREFT 193
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-SKLSTHCPLTIEYD 119
+ + S + D R ++S H L ++
Sbjct: 194 WFSHKGNGF--------RLDHAFASPSLAARVTDVFYSHAERLDRISDHSALILDIQ 242
>gi|261315552|ref|ZP_05954749.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis
M163/99/10]
gi|261317992|ref|ZP_05957189.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis B2/94]
gi|261758554|ref|ZP_06002263.1| endonuclease/exonuclease/phosphatase family [Brucella sp. F5/99]
gi|265989022|ref|ZP_06101579.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis
M292/94/1]
gi|261297215|gb|EEY00712.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis B2/94]
gi|261304578|gb|EEY08075.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis
M163/99/10]
gi|261738538|gb|EEY26534.1| endonuclease/exonuclease/phosphatase family [Brucella sp. F5/99]
gi|264661219|gb|EEZ31480.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis
M292/94/1]
Length = 217
Score = 37.5 bits (85), Expect = 0.57, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 39/158 (24%), Gaps = 42/158 (26%)
Query: 5 QGEWLKKWADQKIK----TGIPFVIAGDFNRKINSIGDTDDFWQK--------------- 45
+ +++ ++K T ++I GDFN I D W
Sbjct: 59 EARAIRRIIEEKFGIDRVTERRWLICGDFNDYRERILIGGDEWNGYEFTPVMEEESALNV 118
Query: 46 ----------------MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
MD L + C + S + + +
Sbjct: 119 LLGDGFAVNLVERRPVMDRWTLYHTRGPLERHLCQLDYIMASPAFAAKNEHAVPDIIRRG 178
Query: 90 SFSIVSY----DQSDLDTRRS---KLSTHCPLTIEYDF 120
+ + K S HCP+++ +
Sbjct: 179 QPWRTIFPPEQNVDRYPRTGWDRPKASDHCPVSVTLNM 216
>gi|256113921|ref|ZP_05454714.1| Endonuclease/exonuclease/phosphatase family protein [Brucella
melitensis bv. 3 str. Ether]
gi|265995273|ref|ZP_06107830.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 3
str. Ether]
gi|262766386|gb|EEZ12175.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 3
str. Ether]
Length = 369
Score = 37.5 bits (85), Expect = 0.57, Method: Composition-based stats.
Identities = 15/158 (9%), Positives = 38/158 (24%), Gaps = 42/158 (26%)
Query: 5 QGEWLKKWADQKIK----TGIPFVIAGDFNRKINSI----GDTD------------DFWQ 44
+ +++ ++K T ++I GDFN I + +
Sbjct: 211 EARAIRRIIEEKFGIDRVTERRWLICGDFNDYRERILIGGDEWNGYEFTPVMEEESALNV 270
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY-------- 96
+ + + + + L+ + D +
Sbjct: 271 LLGDGFAVNLVERRPVMDRWTLYHTRGPLERHLCQLDYIMASPAFAAKNEHAVPDIIRRG 330
Query: 97 -----------DQSDLDTRRS---KLSTHCPLTIEYDF 120
+ K S HCP+++ +
Sbjct: 331 QPWRTIFPPEQNVDRYPRTGWDRPKASDHCPVSVTLNM 368
>gi|94264685|ref|ZP_01288466.1| hypothetical protein MldDRAFT_4776 [delta proteobacterium MLMS-1]
gi|93454851|gb|EAT05098.1| hypothetical protein MldDRAFT_4776 [delta proteobacterium MLMS-1]
Length = 865
Score = 37.5 bits (85), Expect = 0.57, Method: Composition-based stats.
Identities = 7/84 (8%), Positives = 20/84 (23%), Gaps = 2/84 (2%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
W ++ + + GD+ + D + + F + + + R
Sbjct: 351 WQEEGEDAEVRLINLGDYLSGHDDAD--DWLDEFSGSEETYDGFYWKYDEGSDWWWRGGY 408
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVS 95
+ + S
Sbjct: 409 EDRHEFWVYMDNYDDRSEEIERDS 432
>gi|56756625|gb|AAW26485.1| SJCHGC05406 protein [Schistosoma japonicum]
Length = 198
Score = 37.5 bits (85), Expect = 0.57, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 28/117 (23%), Gaps = 10/117 (8%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDD----FWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ +G +IAGDFN W + + E S N
Sbjct: 80 ETQPSGTHLIIAGDFNLFPTHEAYRVLREHGLWPVLKGEHQTTLNHSEGRSNHLRAYDNA 139
Query: 71 SSLDYFVIDRDNKNFLIDNS------FSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
I + +S + +S H P+ + +
Sbjct: 140 WLSADLSISSGSTARWTGDSGVILKGLRHPLIPEETGSGANGLVSDHAPIWFDINLP 196
>gi|255015090|ref|ZP_05287216.1| hypothetical protein B2_14377 [Bacteroides sp. 2_1_7]
Length = 619
Score = 37.5 bits (85), Expect = 0.58, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 27/121 (22%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L ++ + P IAGD+N F ++ D +
Sbjct: 164 ILRREAAF----------AHKPLFIAGDWNATA-----HSPFITEISKDFQ---LLSNPK 205
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S LDY F+ +S + S H P+ E
Sbjct: 206 QATFPASTPDSCLDYI-----AGYVKNGQPFTRLSAWVPEEAV----ASDHRPVVTEVRL 256
Query: 121 E 121
+
Sbjct: 257 K 257
>gi|229107611|ref|ZP_04237305.1| hypothetical protein bcere0019_59150 [Bacillus cereus Rock3-28]
gi|228675841|gb|EEL30992.1| hypothetical protein bcere0019_59150 [Bacillus cereus Rock3-28]
Length = 315
Score = 37.5 bits (85), Expect = 0.58, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 32/118 (27%), Gaps = 4/118 (3%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + ++ T +P V GDFN N G + + + TC
Sbjct: 195 QLAQA-RELLTGPGATDLPLVFIGDFNSNSNGSGPSYNLLINAGFKDTWTIAGKGNGLTC 253
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY---DQSDLDTRRSKLSTHCPLTIEY 118
+ + + D F + V +Q D S H +
Sbjct: 254 CQDANVLNLISQLFVRIDLILFRGNFKVEKVDVVGEEQEDRTPTALWPSDHAGVVASL 311
>gi|301611110|ref|XP_002935083.1| PREDICTED: 2',5'-phosphodiesterase 12 [Xenopus (Silurana)
tropicalis]
gi|73487270|gb|AAI01401.1| LOC734133 protein [Xenopus (Silurana) tropicalis]
Length = 551
Score = 37.5 bits (85), Expect = 0.58, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 37/141 (26%), Gaps = 22/141 (15%)
Query: 2 LSQQGEWLKK--WADQKIKTGIPFVIAGDFNRKINS------------IGDTDDFWQKMD 47
L Q L ++ GIP V GDFN N+ D D +
Sbjct: 410 LVQMAVALAHLGHVANELYGGIPVVFCGDFNSLPNTGLHRFVQGGAIAEDDEDWTSNGEE 469
Query: 48 PDGLLIRFPQ-------EKESTCNVIKRNKSSLDYFVIDRD-NKNFLIDNSFSIVSYDQS 99
+ + + N I LDY ID I S Q
Sbjct: 470 ERCNMALTHPFSLASACGEPAYTNYIGEFHGCLDYIFIDSRQLALEQIIPLPSHEEVTQY 529
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
+ S H L + +
Sbjct: 530 RALPSVAHPSDHLALVCDLKW 550
>gi|115360332|ref|YP_777469.1| endonuclease/exonuclease/phosphatase [Burkholderia ambifaria AMMD]
gi|115285660|gb|ABI91135.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria AMMD]
Length = 269
Score = 37.5 bits (85), Expect = 0.58, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 30/117 (25%), Gaps = 20/117 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + +++ +P ++ GD N + F + L+ RF +
Sbjct: 156 ERSAQ-VQRLLAAFDTGAMPVILMGDIN---------EWFVRGRALRALVTRFRRAPAPR 205
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I +V + R + S H PL
Sbjct: 206 TFPT---------LYPVFSLDRIWIHPGEWLVDVNVHRSMRAR-RASDHYPLVARMR 252
>gi|126438983|ref|YP_001059231.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 668]
gi|126218476|gb|ABN81982.1| endonuclease/exonuclease/phosphatase family protein [Burkholderia
pseudomallei 668]
Length = 286
Score = 37.5 bits (85), Expect = 0.58, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ ++
Sbjct: 184 ARAADAIVCGDFNSAYRSDAYRRFLAPFPDAPRFVDAWLSRHPGKTPPMTAGVYDTAQWS 243
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F+ D +S + D + S H P+ +E
Sbjct: 244 EGPMTCDFAFVTDTLVRRLSRCEID---GTVRASDHQPIVLELS 284
>gi|229089738|ref|ZP_04220999.1| Sphingomyelinase C [Bacillus cereus Rock3-42]
gi|228693637|gb|EEL47339.1| Sphingomyelinase C [Bacillus cereus Rock3-42]
Length = 338
Score = 37.5 bits (85), Expect = 0.58, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 203 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 262
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 263 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 322
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 323 NDY-SDHYPVEATISMK 338
>gi|149059820|gb|EDM10703.1| synaptojanin 1, isoform CRA_d [Rattus norvegicus]
Length = 1274
Score = 37.5 bits (85), Expect = 0.58, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 32/125 (25%), Gaps = 17/125 (13%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDT----------------DDFWQKMDPDGLLIRFP 56
+ + + GDFN +I+ + D + + + F
Sbjct: 444 MGRMLFSHDYVFWCGDFNYRIDLPNEEVKELIRQQNWDSLIAGDQLINQKNAGQIFRGFL 503
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ K + + + + + + + K S H P+
Sbjct: 504 EGKVTFA-PTYKYDLFSEDYDTSEKCRTPAWTDRVLWRRRKWPFDRSAELKTSDHRPVVA 562
Query: 117 EYDFE 121
D +
Sbjct: 563 LIDID 567
>gi|147862335|emb|CAN81919.1| hypothetical protein VITISV_030820 [Vitis vinifera]
Length = 1136
Score = 37.5 bits (85), Expect = 0.58, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 28/106 (26%), Gaps = 15/106 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ + GDFN + + + + D L+ P +
Sbjct: 761 DEPWCLGGDFNSTLYQRERSRQGRITPTMRRFAHIIDDLGLVDLPLQGGVFTWSRG---- 816
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ S+ +S H P+ +E
Sbjct: 817 --LNNXSWARLDRFLVSPSWLDKFSGVI-QRRLXRPVSDHFPILLE 859
>gi|147788645|emb|CAN69756.1| hypothetical protein VITISV_008645 [Vitis vinifera]
Length = 1196
Score = 37.5 bits (85), Expect = 0.58, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 15/105 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD--------FWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ I GDFN + + + ++ D L+ P + +
Sbjct: 636 EDPWCIGGDFNITLFPRERSSQRRMNSXMRKFAEIVDDLGLMDLPLQGGEFTW------N 689
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ FL+ S+ Y+ +S H P+ +
Sbjct: 690 GGQNNQVWARLDRFLVSPSWX-DQYNGISQCRLPRPVSDHFPIML 733
>gi|329896531|ref|ZP_08271589.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
gi|328921748|gb|EGG29121.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
Length = 255
Score = 37.5 bits (85), Expect = 0.59, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 11/126 (8%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT----------DDFWQKMDPDGLLIRFP 56
+ L ++ F+I G++ + ++ D ++
Sbjct: 129 QLLVAHLEKVSHKRREFIICGNWRIAHKAKDVEYTERRSKLPGFLAEERQSLDEIMELGY 188
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-STHCPLT 115
+ N S + D + Y+ ++K STH P+
Sbjct: 189 VDAFREVNSDSDEYSFWPGGQVGVDGMRTDFQLVSKGLKYNIDYGVIYKAKSFSTHAPVI 248
Query: 116 IEYDFE 121
++YD E
Sbjct: 249 MDYDLE 254
>gi|291614973|ref|YP_003525130.1| endonuclease/exonuclease/phosphatase [Sideroxydans lithotrophicus
ES-1]
gi|291585085|gb|ADE12743.1| Endonuclease/exonuclease/phosphatase [Sideroxydans lithotrophicus
ES-1]
Length = 271
Score = 37.5 bits (85), Expect = 0.59, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 30/108 (27%), Gaps = 24/108 (22%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+Q K+ P +I GDFN + T V R +
Sbjct: 186 VEQLRKSTGPTLIGGDFNVSNRDSLVH-----------QFADAGYQPVQTTEVTWRYRPF 234
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + V Y + +K S H L E++F
Sbjct: 235 V--------LDHIFHSPHLQSVRYTV-----KPTKASDHHILLAEFEF 269
>gi|296805393|ref|XP_002843521.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Arthroderma otae CBS 113480]
gi|238844823|gb|EEQ34485.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Arthroderma otae CBS 113480]
Length = 1172
Score = 37.5 bits (85), Expect = 0.59, Method: Composition-based stats.
Identities = 10/101 (9%), Positives = 22/101 (21%), Gaps = 3/101 (2%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P + GD + + N + +
Sbjct: 817 RPLIEKGDLETLYQNDQLNLQMVAGL--AFQFYMEGPVTFPPTY-RYDNGTDEYDTSEKQ 873
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + Q +T K S H P+ ++ +
Sbjct: 874 RIPAWCDRVLWRGRILRQLAYNTAPLKFSDHRPVYAIFECD 914
>gi|229159752|ref|ZP_04287760.1| Sphingomyelinase C [Bacillus cereus R309803]
gi|228623689|gb|EEK80507.1| Sphingomyelinase C [Bacillus cereus R309803]
Length = 333
Score = 37.5 bits (85), Expect = 0.59, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 30/136 (22%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I V GD N +S + ++ +
Sbjct: 198 QLKEIQDFIKNKNIPNDEYVVFGGDMNVNKINAENDSDSEYASMFKILHASIPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + + + + SF Q
Sbjct: 258 TWDATTNSIAKYNYPDAPAEHLDYIIASKDHANPSFVENKVLQVKSPKWSVTSWFKKYTY 317
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 DDYSDHYPVEATISMK 333
>gi|255033851|ref|YP_003084472.1| Endonuclease/exonuclease/phosphatase [Dyadobacter fermentans DSM
18053]
gi|254946607|gb|ACT91307.1| Endonuclease/exonuclease/phosphatase [Dyadobacter fermentans DSM
18053]
Length = 365
Score = 37.5 bits (85), Expect = 0.59, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 27/121 (22%)
Query: 3 SQQGEW--LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ E+ ++ W DQ + P ++ GDFN + + +EK
Sbjct: 264 RRAAEYEIVQSWVDQ---SPYPLIVCGDFNEVP-YGYVYGKLRKHL------RNSFEEKG 313
Query: 61 STCNVIKR---NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+D+ D + +FS V Y S H P+
Sbjct: 314 RGFGFTYNQIPYFIRIDHQFYDDSRLSLHAFRTFSKVPY------------SDHNPIMGT 361
Query: 118 Y 118
Y
Sbjct: 362 Y 362
>gi|333029608|ref|ZP_08457669.1| Endonuclease/exonuclease/phosphatase [Bacteroides coprosuis DSM
18011]
gi|332740205|gb|EGJ70687.1| Endonuclease/exonuclease/phosphatase [Bacteroides coprosuis DSM
18011]
Length = 363
Score = 37.5 bits (85), Expect = 0.59, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 26/115 (22%), Gaps = 19/115 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +Q + + I ++ GDFN + + L +
Sbjct: 262 IRQKQAKKVDNVVK--ISKLPFIIVCGDFNDSP-------LCYTNRLLEETLDNAFVKSG 312
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ N LI + + S H P+
Sbjct: 313 KGLGISYNQNKFYF------RIDNILISRNLKAYNCMVDKSIKD----SDHYPIW 357
>gi|90418862|ref|ZP_01226773.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90336942|gb|EAS50647.1| conserved hypothetical membrane protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 371
Score = 37.5 bits (85), Expect = 0.59, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 16/102 (15%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ +P ++AGDFN + +++M G L+ + +
Sbjct: 249 ADSTMPTILAGDFNAVP-----WERTFRRMLRVGRLLDPRVGRGYFATYD------AESP 297
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ + L ++ ++ + S L S H P+ E
Sbjct: 298 ILAWPLDHILFQDAIGLLGF--SSLPNVD---SDHYPVMAEL 334
>gi|327403479|ref|YP_004344317.1| Endonuclease/exonuclease/phosphatase [Fluviicola taffensis DSM
16823]
gi|327318987|gb|AEA43479.1| Endonuclease/exonuclease/phosphatase [Fluviicola taffensis DSM
16823]
Length = 343
Score = 37.5 bits (85), Expect = 0.60, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 34/139 (24%), Gaps = 29/139 (20%)
Query: 4 QQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR--FPQEK 59
Q + + D+ +K ++ GDFN N+I D K D +
Sbjct: 201 QAAKVARAKVDEILKADPKANIILMGDFNDHPNNISIQDVLKAKDVSDSSADLLDLFADD 260
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL----------- 108
K+ + + S + + + KL
Sbjct: 261 HKAGKGTHNYKN-EWGVLDHFIVSRAIYSGSNGVALFPNDGIIVYEEKLLFTQKDGSKKP 319
Query: 109 -------------STHCPL 114
S H P+
Sbjct: 320 STTYGGPNYYGGYSDHLPI 338
>gi|325003619|ref|ZP_08124731.1| endonuclease/exonuclease/phosphatase [Pseudonocardia sp. P1]
Length = 340
Score = 37.5 bits (85), Expect = 0.60, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 24/109 (22%), Gaps = 15/109 (13%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
Q P VIAGDFN ++ + D S
Sbjct: 247 VGQWCSGDTPAVIAGDFNATLDHSVFREATAGCGDAAAQT----GNGLSGTWPTW----- 297
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + L + S+ + + H +
Sbjct: 298 -APAWLGPQIDHVLSTGGITAESFSTHVVP-----GTDHRAVVTTLRLP 340
>gi|209878826|ref|XP_002140854.1| endonuclease/exonuclease/phosphatase family protein
[Cryptosporidium muris RN66]
gi|209556460|gb|EEA06505.1| endonuclease/exonuclease/phosphatase family protein
[Cryptosporidium muris RN66]
Length = 482
Score = 37.5 bits (85), Expect = 0.60, Method: Composition-based stats.
Identities = 9/77 (11%), Positives = 19/77 (24%), Gaps = 5/77 (6%)
Query: 41 DFWQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
+ + F K + S ++ D + + +
Sbjct: 281 LLLRDFNLIDAYRLFYPGKINKYTCWDQTKCSRINNRGSRIDLFLVSRNLINRVKGCEII 340
Query: 100 DLDTRRSKLSTHCPLTI 116
D S HCP+ +
Sbjct: 341 DNVCG----SDHCPIVL 353
>gi|110835509|ref|YP_694368.1| hypothetical protein ABO_2648 [Alcanivorax borkumensis SK2]
gi|110648620|emb|CAL18096.1| conserved hypothetical protein [Alcanivorax borkumensis SK2]
Length = 300
Score = 37.5 bits (85), Expect = 0.60, Method: Composition-based stats.
Identities = 13/107 (12%), Positives = 28/107 (26%), Gaps = 20/107 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ + + V+ GDFN ++N +
Sbjct: 195 YLARLLADYKYVVVMGDFNCRLNHLD-HSPLAALGLQTVRADNL------NTYPSWAPDR 247
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+D+ ++ + ++ + LS H PL E
Sbjct: 248 HIDHILLSPELESRHTRVLSDCL-------------LSDHLPLATEI 281
>gi|270262471|ref|ZP_06190742.1| endonuclease/exonuclease/phosphatase [Serratia odorifera 4Rx13]
gi|270043155|gb|EFA16248.1| endonuclease/exonuclease/phosphatase [Serratia odorifera 4Rx13]
Length = 360
Score = 37.5 bits (85), Expect = 0.60, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 22/105 (20%), Gaps = 16/105 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
K+ P ++ GD N + L+ + +
Sbjct: 230 KSVAKSAFPVIVTGDLNDVA-----WSTTTRLFLKVSGLLDPRRGRGMFSTFHAGYPFLR 284
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + L S H P+ +E
Sbjct: 285 WPLDHVFHSD-----------DFVLGSLRRLTHVGSDHFPILVEL 318
>gi|297722393|ref|NP_001173560.1| Os03g0643433 [Oryza sativa Japonica Group]
gi|255674738|dbj|BAH92288.1| Os03g0643433 [Oryza sativa Japonica Group]
Length = 721
Score = 37.5 bits (85), Expect = 0.60, Method: Composition-based stats.
Identities = 13/119 (10%), Positives = 34/119 (28%), Gaps = 15/119 (12%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKIN--------SIGDTDDFWQKMDPDGLLIRFPQE 58
++L + + K P ++ GDFN N + + L
Sbjct: 112 DFLVELVNACNKEPCPLLVGGDFNIIRNPSEKNNDRYNDKWPFLFNVVIDSVNLRELELS 171
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + ++ ++ + + + + + S H PL ++
Sbjct: 172 GRKFTWASSMQNP-------TFEKLDRVLTSTEWELRFPLATVRALNREFSDHTPLLLD 223
>gi|194306040|dbj|BAG55474.1| hypothetical protein [uncultured bacterium]
Length = 329
Score = 37.5 bits (85), Expect = 0.60, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 26/120 (21%), Gaps = 26/120 (21%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + + P ++ GDFN ++++ I
Sbjct: 221 RQQVEAI---VEDIQPGRQPVIVGGDFNT------VRRAHIKRLEQQFGSI--------- 262
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK---LSTHCPLTIEYD 119
+ I + + S H P+ +
Sbjct: 263 -----GMARVTRGIGPTIRKYRVQPSAADHIFARGIEVEARGKIPQVLSSDHFPVWVRLR 317
>gi|183600243|ref|ZP_02961736.1| hypothetical protein PROSTU_03785 [Providencia stuartii ATCC 25827]
gi|188022538|gb|EDU60578.1| hypothetical protein PROSTU_03785 [Providencia stuartii ATCC 25827]
Length = 281
Score = 37.5 bits (85), Expect = 0.60, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 33/117 (28%), Gaps = 24/117 (20%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + + + P ++AGDFN + ++ L + +
Sbjct: 188 RQLSKLGEHISKHVG---PVLLAGDFNAWSRQRVN---ALKRFVRSVGLKEVNYDTDQRT 241
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R L Y + D + S H P+ ++D
Sbjct: 242 KAFGRPLDYLFYRGL------------------KVKDCYVTNTDASDHNPIITQFDL 280
>gi|28871801|ref|NP_794420.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato str. DC3000]
gi|28855053|gb|AAO58115.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 363
Score = 37.5 bits (85), Expect = 0.60, Method: Composition-based stats.
Identities = 19/132 (14%), Positives = 32/132 (24%), Gaps = 15/132 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKI-------------NSIGDTDDFWQKMDPD 49
+Q + + G P++I GDFN D++
Sbjct: 231 QKQIASTETLLSKLEGGGTPWLIGGDFNLLPLGQYQRLPEQQRHGYAADSELHALWEKYP 290
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + + DR S VS DT +S
Sbjct: 291 MIPNNTESSGTDRSQWLTHFPNDNRINGPDRTVDYLFYSPSLKRVSARVRRDDTLL--IS 348
Query: 110 THCPLTIEYDFE 121
H P+ +
Sbjct: 349 DHLPVIGRFLLP 360
>gi|308370528|ref|ZP_07421881.2| hypothetical exported protein [Mycobacterium tuberculosis SUMu003]
gi|308374126|ref|ZP_07434963.2| hypothetical exported protein [Mycobacterium tuberculosis SUMu006]
gi|308376539|ref|ZP_07439217.2| hypothetical exported protein [Mycobacterium tuberculosis SUMu008]
gi|308331658|gb|EFP20509.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu003]
gi|308342920|gb|EFP31771.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu006]
gi|308350662|gb|EFP39513.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu008]
Length = 440
Score = 37.5 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 4/121 (3%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+ + Q G ++ GDFN + + + +++ + +T
Sbjct: 318 QVANYIQQN-SAGRAVIVTGDFNARYSDDQSALLQFAQVNGLTDAWVQVEHGPTTPPFAP 376
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD---LDTRRSKLSTHCPLTIEYDFEKGN 124
+ ++D+ + VSY +++ LS H P + + + N
Sbjct: 377 TCMVGNECELLDKIFYRSGQGVTLQAVSYGNEAPKFFNSKGEPLSDHSPAVVGFHYVADN 436
Query: 125 V 125
V
Sbjct: 437 V 437
>gi|308370133|ref|ZP_07420409.2| hypothetical exported protein [Mycobacterium tuberculosis SUMu002]
gi|308371792|ref|ZP_07426247.2| hypothetical exported protein [Mycobacterium tuberculosis SUMu004]
gi|308372962|ref|ZP_07430565.2| hypothetical exported protein [Mycobacterium tuberculosis SUMu005]
gi|308325219|gb|EFP14070.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu002]
gi|308335379|gb|EFP24230.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu004]
gi|308339186|gb|EFP28037.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu005]
Length = 507
Score = 37.5 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 4/121 (3%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+ + Q G ++ GDFN + + + +++ + +T
Sbjct: 385 QVANYIQQN-SAGRAVIVTGDFNARYSDDQSALLQFAQVNGLTDAWVQVEHGPTTPPFAP 443
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD---LDTRRSKLSTHCPLTIEYDFEKGN 124
+ ++D+ + VSY +++ LS H P + + + N
Sbjct: 444 TCMVGNECELLDKIFYRSGQGVTLQAVSYGNEAPKFFNSKGEPLSDHSPAVVGFHYVADN 503
Query: 125 V 125
V
Sbjct: 504 V 504
>gi|289744619|ref|ZP_06503997.1| hypothetical exported protein [Mycobacterium tuberculosis 02_1987]
gi|289756974|ref|ZP_06516352.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289685147|gb|EFD52635.1| hypothetical exported protein [Mycobacterium tuberculosis 02_1987]
gi|289712538|gb|EFD76550.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length = 374
Score = 37.5 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 4/121 (3%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+ + Q G ++ GDFN + + + +++ + +T
Sbjct: 252 QVANYIQQN-SAGRAVIVTGDFNARYSDDQSALLQFAQVNGLTDAWVQVEHGPTTPPFAP 310
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD---LDTRRSKLSTHCPLTIEYDFEKGN 124
+ ++D+ + VSY +++ LS H P + + + N
Sbjct: 311 TCMVGNECELLDKIFYRSGQGVTLQAVSYGNEAPKFFNSKGEPLSDHSPAVVGFHYVADN 370
Query: 125 V 125
V
Sbjct: 371 V 371
>gi|260204091|ref|ZP_05771582.1| hypothetical protein MtubK8_07255 [Mycobacterium tuberculosis K85]
gi|289573516|ref|ZP_06453743.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
gi|289537947|gb|EFD42525.1| conserved hypothetical protein [Mycobacterium tuberculosis K85]
Length = 490
Score = 37.5 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 4/121 (3%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+ + Q G ++ GDFN + + + +++ + +T
Sbjct: 368 QVANYIQQN-SAGRAVIVTGDFNARYSDDQSALLQFAQVNGLTDAWVQVEHGPTTPPFAP 426
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD---LDTRRSKLSTHCPLTIEYDFEKGN 124
+ ++D+ + VSY +++ LS H P + + + N
Sbjct: 427 TCMVGNECELLDKIFYRSGQGVTLQAVSYGNEAPKFFNSKGEPLSDHSPAVVGFHYVADN 486
Query: 125 V 125
V
Sbjct: 487 V 487
>gi|256061437|ref|ZP_05451581.1| Endonuclease/exonuclease/phosphatase family protein [Brucella
neotomae 5K33]
gi|261325444|ref|ZP_05964641.1| endonuclease/exonuclease/phosphatase [Brucella neotomae 5K33]
gi|261301424|gb|EEY04921.1| endonuclease/exonuclease/phosphatase [Brucella neotomae 5K33]
Length = 369
Score = 37.5 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 15/158 (9%), Positives = 39/158 (24%), Gaps = 42/158 (26%)
Query: 5 QGEWLKKWADQKIK----TGIPFVIAGDFNRKINSI----GDTD------------DFWQ 44
+ +++ ++K T ++I GDFN I + +
Sbjct: 211 EARAIRRIIEEKFGIDRVTERRWLICGDFNDYRERILIGGDEWNGYEFTPVMEEESALNV 270
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY-------- 96
+ + + + + L+ + D +
Sbjct: 271 LLGDGFAVNLVERRPVMDRWTLYHTRGPLERHLCQLDYIMASPAFAAKNEHAVPDIIRRG 330
Query: 97 -----------DQSDLDTRRS---KLSTHCPLTIEYDF 120
+ K+S HCP+++ +
Sbjct: 331 QPWRTIFPPEQNVDRYPRTGWDRPKVSDHCPVSVTLNM 368
>gi|187607433|ref|NP_001120209.1| sphingomyelin phosphodiesterase 2, neutral membrane (neutral
sphingomyelinase) [Xenopus (Silurana) tropicalis]
gi|166796474|gb|AAI59354.1| LOC100145256 protein [Xenopus (Silurana) tropicalis]
Length = 395
Score = 37.5 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 21/128 (16%), Positives = 35/128 (27%), Gaps = 10/128 (7%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-FWQKMDPDGLLIRFPQEKESTC 63
Q L ++ V+AGD N +G W + L + C
Sbjct: 155 QSWELAQFIRHTSNNSDVVVLAGDLNMHPGDLGVKLVREWTGLKDSYLECTEYEGPPDGC 214
Query: 64 NVIKRN----KSSLDYFVIDRDNKNFLIDNSF-SIVSYDQSDL----DTRRSKLSTHCPL 114
+I N L F + ++ VS Q + S H +
Sbjct: 215 TLIPSNPFTDPQELKNFPQGIRIDYIMYKSAPGIAVSCQQVTTGSQSSRSDTPFSDHEIV 274
Query: 115 TIEYDFEK 122
T ++
Sbjct: 275 TATLRLQR 282
>gi|134291232|ref|YP_001115001.1| endonuclease/exonuclease/phosphatase [Burkholderia vietnamiensis
G4]
gi|134134421|gb|ABO58746.1| Endonuclease/exonuclease/phosphatase [Burkholderia vietnamiensis
G4]
Length = 263
Score = 37.5 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 30/121 (24%), Gaps = 20/121 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + +++ +P ++ GD N + F + L RF +
Sbjct: 156 ERSAQ-VQRLLAAFDTGAMPVILMGDIN---------EWFVRGRALQALTTRFRRAPAPR 205
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
I +V R S H PL + E
Sbjct: 206 TFPT---------AWPVFSLDRIWIHPGELLVDVAVHRSMLARH-ASDHYPLVAQMRVEP 255
Query: 123 G 123
G
Sbjct: 256 G 256
>gi|15840306|ref|NP_335343.1| hypothetical protein MT0911 [Mycobacterium tuberculosis CDC1551]
gi|215429745|ref|ZP_03427664.1| hypothetical protein MtubE_03415 [Mycobacterium tuberculosis
EAS054]
gi|219556754|ref|ZP_03535830.1| hypothetical protein MtubT1_05360 [Mycobacterium tuberculosis T17]
gi|253800088|ref|YP_003033089.1| hypothetical protein TBMG_03100 [Mycobacterium tuberculosis KZN
1435]
gi|308378751|ref|ZP_07483783.2| hypothetical exported protein [Mycobacterium tuberculosis SUMu010]
gi|308379897|ref|ZP_07488020.2| hypothetical exported protein [Mycobacterium tuberculosis SUMu011]
gi|13880468|gb|AAK45157.1| hypothetical protein MT0911 [Mycobacterium tuberculosis CDC1551]
gi|253321591|gb|ACT26194.1| hypothetical exported protein [Mycobacterium tuberculosis KZN 1435]
gi|308359261|gb|EFP48112.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu010]
gi|308363171|gb|EFP52022.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu011]
gi|323720597|gb|EGB29675.1| hypothetical protein TMMG_02877 [Mycobacterium tuberculosis
CDC1551A]
Length = 507
Score = 37.5 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 4/121 (3%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+ + Q G ++ GDFN + + + +++ + +T
Sbjct: 385 QVANYIQQN-SAGRAVIVTGDFNARYSDDQSALLQFAQVNGLTDAWVQVEHGPTTPPFAP 443
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD---LDTRRSKLSTHCPLTIEYDFEKGN 124
+ ++D+ + VSY +++ LS H P + + + N
Sbjct: 444 TCMVGNECELLDKIFYRSGQGVTLQAVSYGNEAPKFFNSKGEPLSDHSPAVVGFHYVADN 503
Query: 125 V 125
V
Sbjct: 504 V 504
>gi|15608028|ref|NP_215403.1| hypothetical protein Rv0888 [Mycobacterium tuberculosis H37Rv]
gi|31792076|ref|NP_854569.1| hypothetical protein Mb0912 [Mycobacterium bovis AF2122/97]
gi|121636811|ref|YP_977034.1| hypothetical protein BCG_0940 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148660666|ref|YP_001282189.1| hypothetical protein MRA_0896 [Mycobacterium tuberculosis H37Ra]
gi|224989282|ref|YP_002643969.1| hypothetical protein JTY_0910 [Mycobacterium bovis BCG str. Tokyo
172]
gi|254549865|ref|ZP_05140312.1| hypothetical protein Mtube_05286 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260185784|ref|ZP_05763258.1| hypothetical protein MtubCP_07110 [Mycobacterium tuberculosis
CPHL_A]
gi|260199908|ref|ZP_05767399.1| hypothetical protein MtubT4_07190 [Mycobacterium tuberculosis T46]
gi|289442300|ref|ZP_06432044.1| hypothetical exported protein [Mycobacterium tuberculosis T46]
gi|289446455|ref|ZP_06436199.1| hypothetical exported protein [Mycobacterium tuberculosis CPHL_A]
gi|289568855|ref|ZP_06449082.1| hypothetical exported protein [Mycobacterium tuberculosis T17]
gi|289749410|ref|ZP_06508788.1| hypothetical exported protein [Mycobacterium tuberculosis T92]
gi|289752943|ref|ZP_06512321.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|297633406|ref|ZP_06951186.1| hypothetical protein MtubK4_04756 [Mycobacterium tuberculosis KZN
4207]
gi|297730391|ref|ZP_06959509.1| hypothetical protein MtubKR_04836 [Mycobacterium tuberculosis KZN
R506]
gi|298524381|ref|ZP_07011790.1| hypothetical exported protein [Mycobacterium tuberculosis
94_M4241A]
gi|306806731|ref|ZP_07443399.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu007]
gi|313657718|ref|ZP_07814598.1| hypothetical protein MtubKV_04826 [Mycobacterium tuberculosis KZN
V2475]
gi|54039991|sp|P64744|Y912_MYCBO RecName: Full=Uncharacterized protein Mb0912
gi|54042479|sp|P64743|Y888_MYCTU RecName: Full=Uncharacterized protein Rv0888/MT0911
gi|1314027|emb|CAA97395.1| PROBABLE EXPORTED PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|31617664|emb|CAD93773.1| PROBABLE EXPORTED PROTEIN [Mycobacterium bovis AF2122/97]
gi|121492458|emb|CAL70926.1| Probable exported protein [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148504818|gb|ABQ72627.1| hypothetical protein MRA_0896 [Mycobacterium tuberculosis H37Ra]
gi|224772395|dbj|BAH25201.1| hypothetical protein JTY_0910 [Mycobacterium bovis BCG str. Tokyo
172]
gi|289415219|gb|EFD12459.1| hypothetical exported protein [Mycobacterium tuberculosis T46]
gi|289419413|gb|EFD16614.1| hypothetical exported protein [Mycobacterium tuberculosis CPHL_A]
gi|289542609|gb|EFD46257.1| hypothetical exported protein [Mycobacterium tuberculosis T17]
gi|289689997|gb|EFD57426.1| hypothetical exported protein [Mycobacterium tuberculosis T92]
gi|289693530|gb|EFD60959.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|298494175|gb|EFI29469.1| hypothetical exported protein [Mycobacterium tuberculosis
94_M4241A]
gi|308346748|gb|EFP35599.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu007]
Length = 490
Score = 37.5 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 4/121 (3%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+ + Q G ++ GDFN + + + +++ + +T
Sbjct: 368 QVANYIQQN-SAGRAVIVTGDFNARYSDDQSALLQFAQVNGLTDAWVQVEHGPTTPPFAP 426
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD---LDTRRSKLSTHCPLTIEYDFEKGN 124
+ ++D+ + VSY +++ LS H P + + + N
Sbjct: 427 TCMVGNECELLDKIFYRSGQGVTLQAVSYGNEAPKFFNSKGEPLSDHSPAVVGFHYVADN 486
Query: 125 V 125
V
Sbjct: 487 V 487
>gi|89074807|ref|ZP_01161261.1| putative exported phosphatase [Photobacterium sp. SKA34]
gi|89049382|gb|EAR54944.1| putative exported phosphatase [Photobacterium sp. SKA34]
Length = 342
Score = 37.5 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 34/137 (24%), Gaps = 18/137 (13%)
Query: 2 LSQQGEWLKKWADQKIK--TGIPFVIAGDFNRKIN---SIGDTDDF------------WQ 44
L+Q E +++W + I P ++AGD N S + D +
Sbjct: 205 LNQAREIVEQWIPELIANADQEPVILAGDHNTSPRLDWSPKNKDMHFGITIPYQVSKIFT 264
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN-SFSIVSYDQSDLDT 103
K + + + V+ D T
Sbjct: 265 KAGFKDAFREMHPNVLTHTGKSWSPQGGDIAPNRIDYIYYKGSKLQALESVTIDSIAAGT 324
Query: 104 RRSKLSTHCPLTIEYDF 120
S H + + F
Sbjct: 325 TNDTTSDHSAVFARFKF 341
>gi|148822098|ref|YP_001286852.1| hypothetical protein TBFG_10907 [Mycobacterium tuberculosis F11]
gi|215410475|ref|ZP_03419283.1| hypothetical protein Mtub9_03912 [Mycobacterium tuberculosis
94_M4241A]
gi|215426155|ref|ZP_03424074.1| hypothetical protein MtubT9_07096 [Mycobacterium tuberculosis T92]
gi|254231196|ref|ZP_04924523.1| hypothetical exported protein [Mycobacterium tuberculosis C]
gi|254363819|ref|ZP_04979865.1| hypothetical exported protein [Mycobacterium tuberculosis str.
Haarlem]
gi|289555329|ref|ZP_06444539.1| hypothetical exported protein [Mycobacterium tuberculosis KZN 605]
gi|308231664|ref|ZP_07413351.2| hypothetical exported protein [Mycobacterium tuberculosis SUMu001]
gi|308377539|ref|ZP_07479587.2| hypothetical exported protein [Mycobacterium tuberculosis SUMu009]
gi|308397496|ref|ZP_07492523.2| hypothetical exported protein [Mycobacterium tuberculosis SUMu012]
gi|124600255|gb|EAY59265.1| hypothetical exported protein [Mycobacterium tuberculosis C]
gi|134149333|gb|EBA41378.1| hypothetical exported protein [Mycobacterium tuberculosis str.
Haarlem]
gi|148720625|gb|ABR05250.1| hypothetical exported protein [Mycobacterium tuberculosis F11]
gi|289439961|gb|EFD22454.1| hypothetical exported protein [Mycobacterium tuberculosis KZN 605]
gi|308216367|gb|EFO75766.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu001]
gi|308355322|gb|EFP44173.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu009]
gi|308366827|gb|EFP55678.1| hypothetical exported protein [Mycobacterium tuberculosis SUMu012]
gi|328459826|gb|AEB05249.1| hypothetical exported protein [Mycobacterium tuberculosis KZN 4207]
Length = 500
Score = 37.5 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 4/121 (3%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+ + Q G ++ GDFN + + + +++ + +T
Sbjct: 378 QVANYIQQN-SAGRAVIVTGDFNARYSDDQSALLQFAQVNGLTDAWVQVEHGPTTPPFAP 436
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD---LDTRRSKLSTHCPLTIEYDFEKGN 124
+ ++D+ + VSY +++ LS H P + + + N
Sbjct: 437 TCMVGNECELLDKIFYRSGQGVTLQAVSYGNEAPKFFNSKGEPLSDHSPAVVGFHYVADN 496
Query: 125 V 125
V
Sbjct: 497 V 497
>gi|326318978|ref|YP_004236650.1| endonuclease/exonuclease/phosphatase [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375814|gb|ADX48083.1| Endonuclease/exonuclease/phosphatase [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 256
Score = 37.5 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 29/118 (24%), Gaps = 15/118 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + P ++AGDFN + + + +
Sbjct: 154 QRQLRRVCDLVNT-FPADDPVIVAGDFNDWRG--RAHEVLRKGAGLHEVFVHAG------ 204
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + + N+ KLS H PL E
Sbjct: 205 ----GRAVRTFPASMPLLALDRIYVRNASVHAPVVLPRKPW--HKLSDHAPLAAEIAL 256
>gi|256840681|ref|ZP_05546189.1| metallophosphoesterase [Parabacteroides sp. D13]
gi|256737953|gb|EEU51279.1| metallophosphoesterase [Parabacteroides sp. D13]
Length = 628
Score = 37.5 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 27/121 (22%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L ++ + P IAGD+N F ++ D +
Sbjct: 173 ILRREAAF----------AHKPLFIAGDWNATA-----HSPFITEISKDFQ---LLSNPK 214
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S LDY F+ +S + S H P+ E
Sbjct: 215 QATFPASTPDSCLDYI-----AGYVKNGQPFTRLSAWVPEEAV----ASDHRPVVTEVRL 265
Query: 121 E 121
+
Sbjct: 266 K 266
>gi|198413380|ref|XP_002125127.1| PREDICTED: similar to Deoxyribonuclease gamma precursor (DNase
gamma) (Deoxyribonuclease I-like 3) (DNase I homolog
protein DHP2) (Liver and spleen DNase) (LS-DNase) (LSD),
partial [Ciona intestinalis]
Length = 480
Score = 37.5 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 15/110 (13%), Positives = 29/110 (26%), Gaps = 1/110 (0%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L+ + D G +I GD N + + + + D + T
Sbjct: 161 LQVYMDAVGVYGNNTIILGDLNADCSYVCQSCWDSVVLRTDPTFHWLIGDDVDTTVSNTD 220
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ V D + D + + +S H P+
Sbjct: 221 -CAYDRIIVAGSDLIDLACDGDTYRFDVALNLTQDQALDVSDHYPVEFRL 269
>gi|296283199|ref|ZP_06861197.1| putative metal-dependent hydrolase [Citromicrobium bathyomarinum
JL354]
Length = 237
Score = 37.5 bits (85), Expect = 0.62, Method: Composition-based stats.
Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 20/112 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + + + + P ++AGD N + G +F + F ++
Sbjct: 139 RQARAIAE-LARVAQEQRPTLLAGDLNEWRPNGGCLKEFGRHFTVLDCGRSFHSQRP--- 194
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ V + S+ S H P+
Sbjct: 195 ---------------MGRLDRIIHGAPLEAVEFGVHHSPL-ASRASDHLPVW 230
>gi|224477773|ref|YP_002635379.1| hypothetical protein Sca_2291 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222422380|emb|CAL29194.1| hypothetical protein SCA_2291 [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 228
Score = 37.5 bits (85), Expect = 0.62, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 9/111 (8%)
Query: 6 GEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + ++ Q + V GDFN S +M L+ + E
Sbjct: 112 AKAVSRFVTQVKQDNPKANIVALGDFNDFQWSQPLKTLEGNQMTD---LVNSVPQNERYS 168
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
V + N SLD+ V+ + + SD + S H PL
Sbjct: 169 YVYQGNSQSLDHVVVSNNLAPHSKLDMVH----VNSDFTDMSGRASDHDPL 215
>gi|212694164|ref|ZP_03302292.1| hypothetical protein BACDOR_03690 [Bacteroides dorei DSM 17855]
gi|237727703|ref|ZP_04558184.1| endonuclease/exonuclease/phosphatase family [Bacteroides sp. D4]
gi|265751009|ref|ZP_06087072.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|212663384|gb|EEB23958.1| hypothetical protein BACDOR_03690 [Bacteroides dorei DSM 17855]
gi|229434559|gb|EEO44636.1| endonuclease/exonuclease/phosphatase family [Bacteroides dorei
5_1_36/D4]
gi|263237905|gb|EEZ23355.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 336
Score = 37.5 bits (85), Expect = 0.62, Method: Composition-based stats.
Identities = 14/132 (10%), Positives = 29/132 (21%), Gaps = 25/132 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR----FPQEKESTCNVIKRNKS 71
I+ +I GDFN + G+ + ++ +
Sbjct: 205 NIRQHPNVMIMGDFNDYPTNNSIAKVLGAVAPKSGVQAKKLYNLMDGRKEGTYRYRGEWG 264
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT---------------------RRSKLST 110
LD ++ S S
Sbjct: 265 VLDQLIVSGFLLQGHDSMRTSYDKAQILKYPFLLEEDEKYGGNIPSRTYWGKKYHGGYSD 324
Query: 111 HCPLTIEYDFEK 122
H P+ ++++ K
Sbjct: 325 HLPVCVDFEIGK 336
>gi|147807236|emb|CAN66193.1| hypothetical protein VITISV_013311 [Vitis vinifera]
Length = 1222
Score = 37.5 bits (85), Expect = 0.62, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 17/106 (16%)
Query: 20 GIPFVIAGDFNRKINSIGDTD---------DFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
P+ + GDFN ++ F Q +D LL Q + RN
Sbjct: 289 EDPWCLGGDFNVILSQRERXRQGRLTGAMRIFAQTVDELELLDLPMQG-GAFTWSGGRNN 347
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S FL+ + + + + S H P+ +
Sbjct: 348 QS------WXRLDRFLVTQQWLEMFSGIA-QCRLQRPTSDHFPILL 386
>gi|147797602|emb|CAN78035.1| hypothetical protein VITISV_031077 [Vitis vinifera]
Length = 844
Score = 37.5 bits (85), Expect = 0.62, Method: Composition-based stats.
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 15/105 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ I GDFN + S + + ++ D L+ P + +
Sbjct: 102 EDPWCIGGDFNITLFSRERSGQRRISSAMRNFAEIVDDLGLVDLPLQGGDFTW------N 155
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ F++ S+ + +S H P+ +
Sbjct: 156 GGLHNQTWARLDRFMVSPSWIDQFSGIN-QCRLPRPVSDHFPIML 199
>gi|327480543|gb|AEA83853.1| conserved hypothetical protein [Pseudomonas stutzeri DSM 4166]
Length = 369
Score = 37.5 bits (85), Expect = 0.62, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 16/109 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A + P ++ GD N + L+ + N
Sbjct: 234 ARSIQHSDDPIIVTGDLNDVA-----WSPTTRLFRKISGLLDPRVGRGMY------NTFH 282
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ + +F F V L S H P+ IE ++
Sbjct: 283 AHHWFLRWPLDHFFHSAHFRFV-----RLLRLPDIGSDHFPVFIELQYD 326
>gi|229522185|ref|ZP_04411602.1| hypothetical protein VIF_002730 [Vibrio cholerae TM 11079-80]
gi|229341110|gb|EEO06115.1| hypothetical protein VIF_002730 [Vibrio cholerae TM 11079-80]
Length = 281
Score = 37.5 bits (85), Expect = 0.62, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 20/114 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L D+ P ++AGDFN + + L QE V
Sbjct: 186 QQLTALLDELRDFTGPVIVAGDFNS-------WSEARMALLSTQLASVGLQE------VR 232
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + F SD S H PL + +
Sbjct: 233 FSPDNRTTFINGLPLDHVFYRGLQLEKAEAPISD-------ASDHNPLLVRFRL 279
>gi|284030306|ref|YP_003380237.1| endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
gi|283809599|gb|ADB31438.1| Endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
Length = 329
Score = 37.5 bits (85), Expect = 0.62, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 23/96 (23%), Gaps = 19/96 (19%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
V+ GDFN N G + K + +D+ ++
Sbjct: 251 VVVMGDFNGTANDRSLAPVTAGLRSAQG----AAGQGFGFTWPAKFPMARIDHIMVR--- 303
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ D S H P+ E
Sbjct: 304 -------GVTPTKAWVMD-----PTGSDHRPVVAEL 327
>gi|148558307|ref|YP_001257966.1| endonuclease/exonuclease/phosphatase family protein [Brucella ovis
ATCC 25840]
gi|148369592|gb|ABQ62464.1| endonuclease/exonuclease/phosphatase family protein [Brucella ovis
ATCC 25840]
Length = 285
Score = 37.5 bits (85), Expect = 0.62, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + + +P ++ GD N + + +
Sbjct: 167 EQQAETILSALQE--ADTLPTLLIGDLN-------EWRIGKRSSLSALMPTFNHVATAVP 217
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L I S + R S H P+ + D +
Sbjct: 218 SFPSR---------FPVLALDRVLGAPDNLITSVKVHNTPLARL-ASDHLPIKVHLDLKT 267
Query: 123 G 123
Sbjct: 268 A 268
>gi|147777454|emb|CAN73833.1| hypothetical protein VITISV_034783 [Vitis vinifera]
Length = 1168
Score = 37.5 bits (85), Expect = 0.62, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 20/120 (16%)
Query: 10 KKWADQKIKT-----GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFP 56
++W +++ P+ I GDFN ++ ++ + ++ + LI P
Sbjct: 622 REWMWEELGAIRGIWEDPWCIGGDFNVTLSLRERSNQGRLTSAMRRFAQVVDELELIDLP 681
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ RN FL+ + +++ S H P+ +
Sbjct: 682 LQGGMLTWSGGRNNQ------AWARLDRFLVTQGWLDH-FNEVVQCRLPRPTSDHFPIVL 734
>gi|305667498|ref|YP_003863785.1| hypothetical protein FB2170_14663 [Maribacter sp. HTCC2170]
gi|88709546|gb|EAR01779.1| hypothetical protein FB2170_14663 [Maribacter sp. HTCC2170]
Length = 602
Score = 37.5 bits (85), Expect = 0.62, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 6/104 (5%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
IP GDFN + G + +KM +G + ++
Sbjct: 505 SDSIPVFFGGDFNAVPHEDGGENLASEKMLVEGFTDAYRSLYPDVE----KHPGFTHQSD 560
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ D + + + S + S H + +++ +
Sbjct: 561 VRIDQLYYKGRGLMNTSTKVISTWPSG--FPSDHFLIVSKFELD 602
>gi|47568807|ref|ZP_00239501.1| phospholipase c precursor [Bacillus cereus G9241]
gi|47554483|gb|EAL12840.1| phospholipase c precursor [Bacillus cereus G9241]
Length = 378
Score = 37.5 bits (85), Expect = 0.62, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 243 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 302
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 303 TWDATTNSIAKYNFPDSPAEYLDYIVASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 362
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 363 NDY-SDHYPVEATISMK 378
>gi|262037554|ref|ZP_06011013.1| endonuclease/exonuclease/phosphatase family protein [Leptotrichia
goodfellowii F0264]
gi|261748484|gb|EEY35864.1| endonuclease/exonuclease/phosphatase family protein [Leptotrichia
goodfellowii F0264]
Length = 288
Score = 37.5 bits (85), Expect = 0.63, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 5/109 (4%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
I +IAGDFN +S + F + E+ T R SS D
Sbjct: 184 NISQESDIIIAGDFNTSADSPAFKNLFEKNNVS----YLLNPEENLTTISDTRLASSYDN 239
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
F+I++D ++ + ++ + + + +S H + EY E +
Sbjct: 240 FLINKDKTKEF-TGNYGVYNFIKDNNSEIKKYVSDHLLIFSEYSIEDDS 287
>gi|261821654|ref|YP_003259760.1| endonuclease/exonuclease/phosphatase [Pectobacterium wasabiae
WPP163]
gi|261605667|gb|ACX88153.1| Endonuclease/exonuclease/phosphatase [Pectobacterium wasabiae
WPP163]
Length = 300
Score = 37.5 bits (85), Expect = 0.63, Method: Composition-based stats.
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 8/98 (8%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
F++AGDFN N + + K++ LD+ +
Sbjct: 208 FILAGDFNSTKNDRVVKE------LNKYWNLVEVAGKDTRTWPAGNPGLDLDHIFTGKGQ 261
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
K + + ++ + S H P+
Sbjct: 262 KWKIEKLTIPNDGSEE--FGIKWQTTSDHIPIMATLKL 297
>gi|168002930|ref|XP_001754166.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694720|gb|EDQ81067.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 442
Score = 37.5 bits (85), Expect = 0.63, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 34/128 (26%), Gaps = 22/128 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDF------WQKMDPDGLLIRFPQEKESTCNVI 66
+ I + GD N +I+ W+ + P L
Sbjct: 265 LPETIMGHDRIIWLGDLNYRIDLPDLETWILVNQSDWKSLLPKDQLKVERDAGRVFQGWH 324
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR----------------RSKLST 110
+ S + ++ + +++F R +KLS
Sbjct: 325 EDAISFPPTYKFVVESDEYFGEDTFKGDKRRTPAWCDRILSHGQGLAQLSYLMVDAKLSD 384
Query: 111 HCPLTIEY 118
H P+ ++
Sbjct: 385 HRPVIAKF 392
>gi|124360723|gb|ABN08700.1| Endonuclease/exonuclease/phosphatase [Medicago truncatula]
Length = 814
Score = 37.5 bits (85), Expect = 0.63, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 38/121 (31%), Gaps = 5/121 (4%)
Query: 4 QQGEWLKKWADQKIKTG-IPFVIAGDFNRKI--NSIGDTDDFWQKMDPDGLLIRFPQE-- 58
+Q + L + +I GDFN + + + + Q D
Sbjct: 632 EQRKELWNFIAHTSAQNSRNLLIGGDFNNVLLVDDRRNGNPVTQHEIQDFSDCLLHNRLS 691
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ T ++ + I N+ + + + + +S HCP++++
Sbjct: 692 EVRTIGDYYTWCNNQTSGDRIYSKIDRFIANTSWLQKFTNAVGEVLPKGVSDHCPISMDM 751
Query: 119 D 119
Sbjct: 752 S 752
>gi|284036131|ref|YP_003386061.1| endonuclease/exonuclease/phosphatase [Spirosoma linguale DSM 74]
gi|283815424|gb|ADB37262.1| Endonuclease/exonuclease/phosphatase [Spirosoma linguale DSM 74]
Length = 372
Score = 37.5 bits (85), Expect = 0.63, Method: Composition-based stats.
Identities = 12/116 (10%), Positives = 31/116 (26%), Gaps = 20/116 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ + + + + P ++ GD N S+ + F
Sbjct: 274 REEVYKVIDYIRE---SPYPVIVTGDHNDTPYSVVYERLRQVLPNS------FEDGGRGF 324
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + + D +++++ + S H P+ Y
Sbjct: 325 GFTYNRLPGFI-------RIDHQFHDPKLPVLNFETLNYIGY----SDHYPIVGTY 369
>gi|323530343|ref|YP_004232495.1| endonuclease/exonuclease/phosphatase [Burkholderia sp. CCGE1001]
gi|323387345|gb|ADX59435.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. CCGE1001]
Length = 258
Score = 37.5 bits (85), Expect = 0.63, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 27/113 (23%), Gaps = 22/113 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + +P ++ GD N + + + P+ S
Sbjct: 165 QVRLL---LEAFDTPDLPVILLGDLNEWF----VWGWPLRALLTRFGRVAAPRTFPS--- 214
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
R + + + +V R S H PL
Sbjct: 215 ---RFPAFA--------LDRVWVHPAARLVDIQVDRSGPARI-ASDHLPLVAR 255
>gi|53715258|ref|YP_101250.1| hypothetical protein BF3974 [Bacteroides fragilis YCH46]
gi|52218123|dbj|BAD50716.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
Length = 678
Score = 37.5 bits (85), Expect = 0.63, Method: Composition-based stats.
Identities = 12/122 (9%), Positives = 30/122 (24%), Gaps = 15/122 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRK-------------INSIGDTDDFWQKMDPDGLLIRFPQEK 59
++T +P ++ GDFN + M +G F ++
Sbjct: 555 IAPNLETDMPVIVTGDFNSCSHLDWTERAKPLHHGYGPVAFPASRYMLENGFKDSFREKN 614
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPLTIE 117
+++ + ++S S H +
Sbjct: 615 PDEIAYQGGTVAAIYGQMQMSRIDFIYYKGGLKVLSSKIVRTAPEIDYVWASDHAAVLTV 674
Query: 118 YD 119
++
Sbjct: 675 FE 676
>gi|237727294|ref|ZP_04557775.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229434150|gb|EEO44227.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 334
Score = 37.5 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 26/109 (23%), Gaps = 21/109 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q + L + + P ++ GDFN S ++
Sbjct: 234 NRQADLLANAIAE---SPYPVIVCGDFNDTPASYVYRKISRS---------LQDCFLQAG 281
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ D L +F + Y S H
Sbjct: 282 RTWKGSYQRWGD----FLRIDYTLCSPAFQVNCYQLVSNPW-----SDH 321
>gi|229528758|ref|ZP_04418148.1| hypothetical protein VCG_001846 [Vibrio cholerae 12129(1)]
gi|229332532|gb|EEN98018.1| hypothetical protein VCG_001846 [Vibrio cholerae 12129(1)]
Length = 281
Score = 37.5 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 20/114 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L D+ P ++AGDFN + + L QE V
Sbjct: 186 QQLTALLDELRDFTGPVIVAGDFNS-------WSEARMALLSTQLASVGLQE------VR 232
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + F SD S H PL + +
Sbjct: 233 FSPDNRTTFINGLPLDHVFYRGLQLEKAEAPISD-------ASDHNPLLVRFRL 279
>gi|153808554|ref|ZP_01961222.1| hypothetical protein BACCAC_02849 [Bacteroides caccae ATCC 43185]
gi|149128876|gb|EDM20093.1| hypothetical protein BACCAC_02849 [Bacteroides caccae ATCC 43185]
Length = 365
Score = 37.5 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 36/131 (27%), Gaps = 30/131 (22%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQK---------MDPDGLLIRFPQEKESTCNVIKRNK 70
+I GDFN + + + LL R Q K +
Sbjct: 232 HPQIIIMGDFNDYPTNKSIQKILEAESPSPTAPSPLKLYHLLARKAQSKNFGSYKYRGEW 291
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT---------------------RRSKLS 109
LD+ ++ N S S S+L + +S
Sbjct: 292 GLLDHLIVSGSLLNPANSFSTSENKATVSNLPFLLTEDKKYGDKEPFRTYKGMKYQGGIS 351
Query: 110 THCPLTIEYDF 120
H P+ ++++
Sbjct: 352 DHLPIYVDFNL 362
>gi|329574088|gb|EGG55665.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1467]
Length = 274
Score = 37.5 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 5/111 (4%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
L+K+ P VI GD N + G + E+ S ++
Sbjct: 168 QLEKYLAM---GQQPLVILGDLNNPAGTTGYQLVENSYL--PIQDAFVVAEETSGEATVE 222
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + + Y+ + +S H L I+
Sbjct: 223 KKIDGWEENEAALRIDYAFVPKQWHVRKYEVIFDGRKTPIVSDHFGLLIQL 273
>gi|330831230|ref|YP_004394182.1| putative phospholipase C [Aeromonas veronii B565]
gi|328806366|gb|AEB51565.1| Putative phospholipase C [Aeromonas veronii B565]
Length = 438
Score = 37.5 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 32/125 (25%), Gaps = 12/125 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q L I + GDFN D + ++ E
Sbjct: 315 QIRSLAASLK--IPATDTVIYGGDFNVNKRKFADDYANMLANLNAHEPAYGGYTEATFDP 372
Query: 64 NVIKRNKS---------SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ LDY V+ R+ N + + + S LS H P+
Sbjct: 373 RINPYAGGPLSGGANVEYLDYLVVSREYGNASHNLNTVWIPRSSDGSLWPASNLSDHFPV 432
Query: 115 TIEYD 119
E
Sbjct: 433 KGEIS 437
>gi|315173423|gb|EFU17440.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1346]
Length = 274
Score = 37.5 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 5/111 (4%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
L+K+ P VI GD N + G + E+ S ++
Sbjct: 168 QLEKYLAM---GQQPLVILGDLNNPAGTTGYQLVENSYL--PIQDAFVVAEETSGEATVE 222
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + + Y+ + +S H L I+
Sbjct: 223 KKIDGWEENEAALRIDYAFVPKQWHVRKYEVIFDGRKTPIVSDHFGLLIQL 273
>gi|295113857|emb|CBL32494.1| Metal-dependent hydrolase [Enterococcus sp. 7L76]
Length = 274
Score = 37.5 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 5/111 (4%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
L+K+ P VI GD N + G + E+ S ++
Sbjct: 168 QLEKYLAM---GQQPLVILGDLNNPAGTTGYQLVENSYL--PIQDAFVVAEETSGEATVE 222
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + + Y+ + +S H L I+
Sbjct: 223 KKIDGWEENEAALRIDYAFVPKQWHVRKYEVIFDGRKTPIVSDHFGLLIQL 273
>gi|265767745|ref|ZP_06095277.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263252417|gb|EEZ23945.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 678
Score = 37.5 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 12/122 (9%), Positives = 30/122 (24%), Gaps = 15/122 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRK-------------INSIGDTDDFWQKMDPDGLLIRFPQEK 59
++T +P ++ GDFN + M +G F ++
Sbjct: 555 IAPNLETDMPVIVTGDFNSCSHLDWTERAKPLHHGYGPVAFPASRYMLENGFKDSFREKN 614
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPLTIE 117
+++ + ++S S H +
Sbjct: 615 PDEVAYQGGTVAAIYGQMQMSRIDFIYYKGGLKVLSSKIVRTAPEIDYVWASDHAAVLTV 674
Query: 118 YD 119
++
Sbjct: 675 FE 676
>gi|256761712|ref|ZP_05502292.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis T3]
gi|256682963|gb|EEU22658.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis T3]
Length = 274
Score = 37.5 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 5/111 (4%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
L+K+ P VI GD N + G + E+ S ++
Sbjct: 168 QLEKYLAM---GQQPLVILGDLNNPAGTTGYQLVENSYL--PIQDAFVVAEETSGEATVE 222
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + + Y+ + +S H L I+
Sbjct: 223 KKIDGWEENEAALRIDYAFVPKQWHVRKYEVIFDGRKTPIVSDHFGLLIQL 273
>gi|229546804|ref|ZP_04435529.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1322]
gi|255974026|ref|ZP_05424612.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis T2]
gi|256854199|ref|ZP_05559563.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis T8]
gi|257081201|ref|ZP_05575562.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis E1Sol]
gi|257086297|ref|ZP_05580658.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis D6]
gi|257415520|ref|ZP_05592514.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis
AR01/DG]
gi|307278991|ref|ZP_07560050.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0860]
gi|307290975|ref|ZP_07570865.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0411]
gi|312901498|ref|ZP_07760772.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0470]
gi|229308153|gb|EEN74140.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1322]
gi|255966898|gb|EET97520.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis T2]
gi|256709759|gb|EEU24803.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis T8]
gi|256989231|gb|EEU76533.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis E1Sol]
gi|256994327|gb|EEU81629.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis D6]
gi|257157348|gb|EEU87308.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis
ARO1/DG]
gi|306498045|gb|EFM67572.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0411]
gi|306504378|gb|EFM73589.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0860]
gi|311291398|gb|EFQ69954.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0470]
gi|315027147|gb|EFT39079.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX2137]
gi|315029829|gb|EFT41761.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX4000]
gi|315172061|gb|EFU16078.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1342]
gi|327534538|gb|AEA93372.1| endonuclease/exonuclease/phosphatase family protein RgfB
[Enterococcus faecalis OG1RF]
Length = 274
Score = 37.5 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 5/111 (4%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
L+K+ P VI GD N + G + E+ S ++
Sbjct: 168 QLEKYLAM---GQQPLVILGDLNNPAGTTGYQLVENSYL--PIQDAFVVAEETSGEATVE 222
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + + Y+ + +S H L I+
Sbjct: 223 KKIDGWEENEAALRIDYAFVPKQWHVRKYEVIFDGRKTPIVSDHFGLLIQL 273
>gi|229548894|ref|ZP_04437619.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis ATCC 29200]
gi|255971408|ref|ZP_05421994.1| predicted protein [Enterococcus faecalis T1]
gi|256957186|ref|ZP_05561357.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis DS5]
gi|257077842|ref|ZP_05572203.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis JH1]
gi|257421203|ref|ZP_05598193.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis X98]
gi|294780545|ref|ZP_06745908.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis PC1.1]
gi|307268034|ref|ZP_07549422.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX4248]
gi|312952774|ref|ZP_07771636.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0102]
gi|229305915|gb|EEN71911.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis ATCC 29200]
gi|255962426|gb|EET94902.1| predicted protein [Enterococcus faecalis T1]
gi|256947682|gb|EEU64314.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis DS5]
gi|256985872|gb|EEU73174.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis JH1]
gi|257163027|gb|EEU92987.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis X98]
gi|294452372|gb|EFG20811.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis PC1.1]
gi|306515675|gb|EFM84202.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX4248]
gi|310629290|gb|EFQ12573.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0102]
gi|315032411|gb|EFT44343.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0017]
gi|315034354|gb|EFT46286.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0027]
gi|315148117|gb|EFT92133.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX4244]
gi|315153031|gb|EFT97047.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0031]
gi|315155263|gb|EFT99279.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0043]
gi|315157589|gb|EFU01606.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0312]
gi|323480139|gb|ADX79578.1| endonuclease/Exonuclease/phosphatase family protein [Enterococcus
faecalis 62]
Length = 274
Score = 37.5 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 5/111 (4%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
L+K+ P VI GD N + G + E+ S ++
Sbjct: 168 QLEKYLAM---GQQPLVILGDLNNPAGTTGYQLVENSYL--PIQDAFVVAEETSGEATVE 222
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + + Y+ + +S H L I+
Sbjct: 223 KKIDGWEENEAALRIDYAFVPKQWHVRKYEVIFDGRKTPIVSDHFGLLIQL 273
>gi|171317293|ref|ZP_02906490.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria MEX-5]
gi|171097554|gb|EDT42391.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria MEX-5]
Length = 271
Score = 37.5 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 29/118 (24%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W + P V+AGDFN N + ++ + + +
Sbjct: 170 RQMHWIAHWIV-RNAGDDPLVLAGDFNDWRNDSV---ALFGEIGLSEVATLLGESGRTFP 225
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + LS H P +
Sbjct: 226 AFSPALALDKMFVRGLTPLEWQAPSGE--------------TAWLSDHLPYIARLRLD 269
>gi|159490372|ref|XP_001703153.1| MaoC-like dehydratase [Chlamydomonas reinhardtii]
gi|158270783|gb|EDO96618.1| MaoC-like dehydratase [Chlamydomonas reinhardtii]
Length = 1117
Score = 37.5 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 34/129 (26%), Gaps = 16/129 (12%)
Query: 3 SQQ----GEWLKKWADQKIKTGIPF----VIAGDFNRKINSIGDTDDFWQKMDPDGLLIR 54
+Q +++ + V AGD+N N+ DT ++ G
Sbjct: 45 RRQLGPPAAAQRRFIADHLAPAATLPGLKVWAGDYNFVCNAAIDTLHRGGRLLDPGTTSL 104
Query: 55 FPQEKESTCNVIK-----RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F S + + R + + ++ + + + S
Sbjct: 105 FASTCASPVDSFRHLHPTRRSFTFINHMGASRIDRIMLSPELLSSLRACAHVP---GRPS 161
Query: 110 THCPLTIEY 118
H +
Sbjct: 162 DHRLVVATL 170
>gi|157376913|ref|YP_001475513.1| hypothetical protein Ssed_3781 [Shewanella sediminis HAW-EB3]
gi|157319287|gb|ABV38385.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
Length = 381
Score = 37.5 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 21/146 (14%), Positives = 46/146 (31%), Gaps = 35/146 (23%)
Query: 8 WLKKW--ADQKIKTGIPFVIAGDFNRKINS--------------------------IGDT 39
L ++ +++ +TG P V+ GDFN ++
Sbjct: 234 ALLRYSMVERRTQTGNPMVLMGDFNDILSDGVLASLTSVDTRIKPDPLLGEVEHQLRDHR 293
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-- 97
++ Q++ +T + S LDY ++ + + + Y+
Sbjct: 294 LKDAYELYQSSQYSLSCQQRPATHYYFAK-GSVLDYILLSSEFDIKNSRSLAEVGRYETY 352
Query: 98 ----QSDLDTRRSKLSTHCPLTIEYD 119
+ R S+ + H P+ I
Sbjct: 353 DRHLINPRFERDSQSTDHAPVMITIS 378
>gi|159037690|ref|YP_001536943.1| sphingomyelin phosphodiesterase [Salinispora arenicola CNS-205]
gi|157916525|gb|ABV97952.1| Sphingomyelin phosphodiesterase [Salinispora arenicola CNS-205]
Length = 318
Score = 37.5 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 31/130 (23%), Gaps = 23/130 (17%)
Query: 5 QGEWLKKWADQKI-KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + L+ + D ++ TG +I GD N S + D
Sbjct: 192 QFDELRAFLDARLIPTGEQVIITGDLNVDRYSAEYAGMLTRLDVSDTSFT-----GHPYS 246
Query: 64 NVIKRNKS--SLDYFVIDRDNKNFLIDNSFSIVSYDQS----DLDTRRSKLS-------- 109
RN D + + N + + + S
Sbjct: 247 WDSARNAMADYNDDRNSRQQLDYVMQRNGHARHGSGDNQTLAVNAPKWCVTSWFVRYCYT 306
Query: 110 ---THCPLTI 116
H P+
Sbjct: 307 DYADHYPVAA 316
>gi|60683195|ref|YP_213339.1| hypothetical protein BF3749 [Bacteroides fragilis NCTC 9343]
gi|60494629|emb|CAH09430.1| putative exported protein [Bacteroides fragilis NCTC 9343]
gi|301164714|emb|CBW24273.1| putative exported protein [Bacteroides fragilis 638R]
Length = 678
Score = 37.5 bits (85), Expect = 0.64, Method: Composition-based stats.
Identities = 12/122 (9%), Positives = 30/122 (24%), Gaps = 15/122 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRK-------------INSIGDTDDFWQKMDPDGLLIRFPQEK 59
++T +P ++ GDFN + M +G F ++
Sbjct: 555 IAPNLETDMPVIVTGDFNSCSHLDWTERAKPLHHGYGPVAFPASRYMLENGFKDSFREKN 614
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPLTIE 117
+++ + ++S S H +
Sbjct: 615 PDEVAYQGGTVAAIYGQMQMSRIDFIYYKGGLKVLSSKIVRTAPEIDYVWASDHAAVLTV 674
Query: 118 YD 119
++
Sbjct: 675 FE 676
>gi|326539108|gb|ADZ87323.1| endonuclease/exonuclease/phosphatase [Brucella melitensis M5-90]
Length = 357
Score = 37.5 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 39/158 (24%), Gaps = 42/158 (26%)
Query: 5 QGEWLKKWADQKIK----TGIPFVIAGDFNRKINSIGDTDDFWQK--------------- 45
+ +++ ++K T ++I GDFN I D W
Sbjct: 199 EARAIRRIIEEKFGIDRVTERRWLICGDFNDYRERILIGGDEWNGYEFTPVMEEESALNV 258
Query: 46 ----------------MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
MD L + C + S + + +
Sbjct: 259 LLGDGFAVNLVERRPVMDRWTLYHTRGPLERHLCQLDYIMASPAFAAKNEHAVPDIIRRG 318
Query: 90 SFSIVSY----DQSDLDTRRS---KLSTHCPLTIEYDF 120
+ + K S HCP+++ +
Sbjct: 319 QPWRTIFPPEQNVDRYPRTGWDRPKASDHCPVSVTLNM 356
>gi|294852706|ref|ZP_06793379.1| endonuclease/exonuclease/phosphatase [Brucella sp. NVSL 07-0026]
gi|294821295|gb|EFG38294.1| endonuclease/exonuclease/phosphatase [Brucella sp. NVSL 07-0026]
Length = 275
Score = 37.5 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 39/158 (24%), Gaps = 42/158 (26%)
Query: 5 QGEWLKKWADQKIK----TGIPFVIAGDFNRKINSIGDTDDFWQK--------------- 45
+ +++ ++K T ++I GDFN I D W
Sbjct: 117 EARAIRRIIEEKFGIDRVTERRWLICGDFNDYRERILIGGDEWNGYEFTPVMEEESALNV 176
Query: 46 ----------------MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
MD L + C + S + + +
Sbjct: 177 LLGDGFAVNLVERRPVMDRWTLYHTRGPLERHLCQLDYIMASPAFAAKNEHAVPDIIRRG 236
Query: 90 SFSIVSY----DQSDLDTRRS---KLSTHCPLTIEYDF 120
+ + K S HCP+++ +
Sbjct: 237 QPWRTIFPPEQNVDRYPRTGWDRPKASDHCPVSVTLNM 274
>gi|295663072|ref|XP_002792089.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides
brasiliensis Pb01]
gi|226279264|gb|EEH34830.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides
brasiliensis Pb01]
Length = 570
Score = 37.5 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 14/150 (9%), Positives = 29/150 (19%), Gaps = 43/150 (28%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIG------------------------------ 37
+ + G ++ GD N + I
Sbjct: 119 AVDARVRNLVDMGKRVILTGDLNISGSEIDSARALEEIRKSTTTNSEFVSAPVRRIFNQL 178
Query: 38 --------DTDDFWQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLID 88
D D + L + ++ +R + L
Sbjct: 179 VSGGKVIGDRDQGRETPVLVDLCREYHPDRRGMYTCWEQRVNA--RPGNYGSRIDYVLCS 236
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S HCP+ +
Sbjct: 237 LIMRDWFCASNIQE--GLMGSDHCPVYADI 264
>gi|164656351|ref|XP_001729303.1| hypothetical protein MGL_3338 [Malassezia globosa CBS 7966]
gi|159103194|gb|EDP42089.1| hypothetical protein MGL_3338 [Malassezia globosa CBS 7966]
Length = 916
Score = 37.5 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 12/131 (9%), Positives = 29/131 (22%), Gaps = 28/131 (21%)
Query: 15 QKIKTGIPFVIAGDFNR---KINSIGDTDD----------------FWQKMDPDGLLIRF 55
+ I++ + AGD N ++ D +K+
Sbjct: 646 RTIESHDHIIWAGDLNYRIGNLSPEDVRDFASRKVLAPLLEGDQLTHARKLGDAFPNYDE 705
Query: 56 PQEKESTCNVI------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ L S + ++ ++S
Sbjct: 706 APIQFPPTYKYDIGSDIYDTSEKLRPPAWTDRILFKCKLPSLYVRTHGYDCAPI---RVS 762
Query: 110 THCPLTIEYDF 120
H P+ + +
Sbjct: 763 DHRPVYVHLEL 773
>gi|66801655|ref|XP_629753.1| hypothetical protein DDB_G0292260 [Dictyostelium discoideum AX4]
gi|60463146|gb|EAL61340.1| hypothetical protein DDB_G0292260 [Dictyostelium discoideum AX4]
Length = 1264
Score = 37.5 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 22/96 (22%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN N DD Q Q + +
Sbjct: 508 IIAGDFNCIHNDNSLLDDIIQSY--TYQHHLIDQGEFKNTPTHTHGNRLDRIYTQYNRID 565
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + LS H P++
Sbjct: 566 PENIYTQVHQIPSS----------LSDHNPISTTIS 591
>gi|312210206|emb|CBX90293.1| hypothetical protein [Leptosphaeria maculans]
Length = 1283
Score = 37.5 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 28/123 (22%), Gaps = 17/123 (13%)
Query: 14 DQKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIRFPQEKESTCNVI- 66
++ I+ + GDFN +++ + + + L +
Sbjct: 798 NRSIEDHDSVIWLGDFNYRIGLSNDKVQRLCHVGDLETLYDNDQLNLQMVAGLTFPYYSE 857
Query: 67 ----------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S + + Q D + S H P+
Sbjct: 858 ARITFPPTYKYDLNSDQYDTSEKARIPAWCDRVLRKGDNIRQIHYDAAPLRFSDHRPVYA 917
Query: 117 EYD 119
+
Sbjct: 918 TFQ 920
>gi|294934718|ref|XP_002781206.1| hypothetical protein Pmar_PMAR019530 [Perkinsus marinus ATCC 50983]
gi|239891541|gb|EER13001.1| hypothetical protein Pmar_PMAR019530 [Perkinsus marinus ATCC 50983]
Length = 607
Score = 37.5 bits (85), Expect = 0.65, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 34/135 (25%), Gaps = 22/135 (16%)
Query: 3 SQQGEWLKK----WADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ 57
Q + + P ++ GDFN I + D + +
Sbjct: 477 RHQANACSSAVLLFLQELSDATRIPVLVGGDFNCDIVDLLDGNPDLDNALAGLTVAE--- 533
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS----------DLDTRRSK 107
R K + D + N + F + + + D +
Sbjct: 534 ----YSYKRHRFKGNRDKLIDRLAVINPRSNREFDLKLHGVAACSFEESLFVDDHEPGVR 589
Query: 108 LSTHCPLTIEYDFEK 122
+ H P+ + +
Sbjct: 590 VFDHLPVMGQLSLGE 604
>gi|329940985|ref|ZP_08290265.1| hypothetical protein SGM_5757 [Streptomyces griseoaurantiacus M045]
gi|329300279|gb|EGG44177.1| hypothetical protein SGM_5757 [Streptomyces griseoaurantiacus M045]
Length = 252
Score = 37.5 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 10/125 (8%), Positives = 19/125 (15%), Gaps = 20/125 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+QG L + GD N + D + +
Sbjct: 142 EQGGLLLDRVAALGTPH--VLAGGDLNEDPAGRTFRRIAAELRDCRTVAPWGEEH----T 195
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----DLDTRRSKLSTHCPLTIEY 118
++ + S H P+
Sbjct: 196 WTR---------TEPHGRIDALFTSKGVGVLGCGVPLGHPGVSERDLRAASDHLPVLAAL 246
Query: 119 DFEKG 123
Sbjct: 247 RLPPT 251
>gi|319782958|ref|YP_004142434.1| endonuclease/exonuclease/phosphatase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317168846|gb|ADV12384.1| Endonuclease/exonuclease/phosphatase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 370
Score = 37.5 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 14/158 (8%), Positives = 35/158 (22%), Gaps = 42/158 (26%)
Query: 5 QGEWLKKWADQK----IKTGIPFVIAGDFNRKINSI------------GDTDDFWQKMD- 47
+ + +++ +++ + I GD N + D+ ++
Sbjct: 212 EAQAVRRIIEERFGKDYAADKRWAICGDMNDYRQRVKVAGDAIDGYRFEVVDEALSCINV 271
Query: 48 ---PDGLLIRFPQEKESTCNVIKRNKSSLDYFVI-------------------DRDNKNF 85
+ E + + + +N
Sbjct: 272 LTAGGFCENVVERRPEMNRWSFYHTRGPEERHLCQLDYILLSKGLAASNATAVPDIIRNG 331
Query: 86 LIDNSFSIVSYDQSDLDTRRS---KLSTHCPLTIEYDF 120
+ + K S HCP+ I D
Sbjct: 332 QPWRTIFPPGQEVDRFPRAGWDRPKASDHCPVAITLDM 369
>gi|255719916|ref|XP_002556238.1| KLTH0H08250p [Lachancea thermotolerans]
gi|238942204|emb|CAR30376.1| KLTH0H08250p [Lachancea thermotolerans]
Length = 512
Score = 37.5 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 6/80 (7%), Positives = 12/80 (15%), Gaps = 2/80 (2%)
Query: 41 DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
F + + + L
Sbjct: 279 PFAESGSLIDTTRYIQGRDRMKMYTVWNTLRNSRPVNYGSRIDYILATAGLKNDLKKADI 338
Query: 101 LDTRRSKLSTHCPLTIEYDF 120
+ S HCP+ +
Sbjct: 339 WP--KIMGSDHCPVFADIQL 356
>gi|171915527|ref|ZP_02930997.1| probable secreted protein [Verrucomicrobium spinosum DSM 4136]
Length = 275
Score = 37.5 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 18/112 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L +T P ++AGDFN + S + + R E +++
Sbjct: 170 RENARVL---IAALKETTTPVILAGDFNDRPGSTTL------TLLAEAGFRRCVPEGDAS 220
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ +D+ ++ L D +V ++ S H PL
Sbjct: 221 SYPADEPRLVIDHVLLRDGADVRLEDAGTKVVP---------NAEASDHRPL 263
>gi|313244439|emb|CBY15231.1| unnamed protein product [Oikopleura dioica]
Length = 524
Score = 37.5 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 12/114 (10%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ T +IAGDFN + + D +D + D + ++ + + +
Sbjct: 414 LRARHPTVNDVIIAGDFNADCDYVRDPEDLTLFSESDNSWLISFEDDTTVSST----ICA 469
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSY----DQSDLDTRRSKL----STHCPLTIEY 118
D+ V+ D ++ + S + Y D + + S H P+ E+
Sbjct: 470 YDHIVLSGDIQDNAVAGSGKVFDYQNFYDTDSIFYNGEPITALISDHFPVVFEF 523
>gi|228937659|ref|ZP_04100296.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228970548|ref|ZP_04131198.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228977118|ref|ZP_04137519.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis Bt407]
gi|228782566|gb|EEM30743.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis Bt407]
gi|228789135|gb|EEM37064.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228822033|gb|EEM68024.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326938155|gb|AEA14051.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 263
Score = 37.5 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 16 KIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
++ + + GDFN ++ G + + L ++ ++ +
Sbjct: 161 RVDSNKLAFLMGDFNNNARLEGEGYEYMMQKGLYDTYGLAI----EKDEGTTVQGEIAGW 216
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
D + L + S + S T R+ +S H + ++ D
Sbjct: 217 DENKHNLRIDLILCNQSKKVHSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|241662748|ref|YP_002981108.1| endonuclease/exonuclease/phosphatase [Ralstonia pickettii 12D]
gi|240864775|gb|ACS62436.1| Endonuclease/exonuclease/phosphatase [Ralstonia pickettii 12D]
Length = 287
Score = 37.5 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 7/106 (6%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDT---DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ +I GDFN K +S+ F ++ +++
Sbjct: 184 LAQTKATIICGDFNCKADSMPKRLATAPFAREPALHDAWEIAHGATPQPPTFGVYDRADW 243
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
D ++ + + ++ S H P+ +E
Sbjct: 244 TEPAYACDFMLISEPLKPRVLRLEINS----ATQASDHQPMLLELR 285
>gi|253999039|ref|YP_003051102.1| Endonuclease/exonuclease/phosphatase [Methylovorus sp. SIP3-4]
gi|253985718|gb|ACT50575.1| Endonuclease/exonuclease/phosphatase [Methylovorus sp. SIP3-4]
Length = 244
Score = 37.5 bits (85), Expect = 0.67, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 20/121 (16%)
Query: 3 SQQGEWLKKWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ L + + +T P ++ GD N + P FP
Sbjct: 136 RSEARNLIRLIQAVEEETKSPLLLMGDINEWQRPSALLRFLDGHLTPVPCKATFPSLCP- 194
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ R ++ + I ++ D R +LS H P+ IE ++
Sbjct: 195 ----------------VLRLDRVWYEAEGIKITAHRIDGNDIR--RLSDHLPIVIELEWP 236
Query: 122 K 122
+
Sbjct: 237 E 237
>gi|237737969|ref|ZP_04568450.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
gi|229419849|gb|EEO34896.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
Length = 274
Score = 37.5 bits (85), Expect = 0.67, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 40/118 (33%), Gaps = 7/118 (5%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ + + +IAGDFN + + ++ ++ + T
Sbjct: 160 MDRVYDYFQNLDSEENDIIIAGDFNLSADDEAFENL----LNHSDEVVHVLNPRIKTTIG 215
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP--LTIEYDFE 121
+ SS D + + S + + + + K+S H P + ++ +F+
Sbjct: 216 KDKLASSYDNMFLSKIYTQEFEGKS-GAIDFTKKQYRMMKDKISDHLPIFIIVDTEFD 272
>gi|33597251|ref|NP_884894.1| hypothetical protein BPP2674 [Bordetella parapertussis 12822]
gi|33573678|emb|CAE37967.1| conserved hypothetical protein [Bordetella parapertussis]
Length = 252
Score = 37.5 bits (85), Expect = 0.67, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 28/118 (23%), Gaps = 15/118 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L ++ Q + ++AGDFN + L +
Sbjct: 150 QEQLRRLCQYLRQHVPAQAAALLAGDFNDWRQRADA-TLARCGLADVHRLALGHAARTFP 208
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N S S+LS H PL E
Sbjct: 209 AAC------------PLLRLDRIYVRNVAGSEPRRLSRRPW--SRLSDHVPLAAEVTL 252
>gi|256377724|ref|YP_003101384.1| endonuclease/exonuclease/phosphatase [Actinosynnema mirum DSM
43827]
gi|255922027|gb|ACU37538.1| Endonuclease/exonuclease/phosphatase [Actinosynnema mirum DSM
43827]
Length = 276
Score = 37.5 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 24/118 (20%), Gaps = 13/118 (11%)
Query: 13 ADQKIKTGIPFVIAGDFNRK-INSIGDTDDF----------WQKMDPDGLLIRFPQEKES 61
++ P V+AGD N I F + + E
Sbjct: 144 LTARLGAAGPVVVAGDQNVVEPGHIPAHPVFGAWEYDFYRSFAEAGFTDAFRLRHPEAVE 203
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + LS H + + D
Sbjct: 204 HSWFGRDTGAGKRNGYRFDHVFLTTTHAALARDCRYLHTPREDG--LSDHSAMEVVLD 259
>gi|30018853|ref|NP_830484.1| sphingomyelin phosphodiesterase [Bacillus cereus ATCC 14579]
gi|229042535|ref|ZP_04190279.1| Sphingomyelinase C [Bacillus cereus AH676]
gi|229126103|ref|ZP_04255125.1| Sphingomyelinase C [Bacillus cereus BDRD-Cer4]
gi|229143400|ref|ZP_04271830.1| Sphingomyelinase C [Bacillus cereus BDRD-ST24]
gi|29894395|gb|AAP07685.1| Sphingomyelin phosphodiesterase [Bacillus cereus ATCC 14579]
gi|228640067|gb|EEK96467.1| Sphingomyelinase C [Bacillus cereus BDRD-ST24]
gi|228657425|gb|EEL13241.1| Sphingomyelinase C [Bacillus cereus BDRD-Cer4]
gi|228726807|gb|EEL78020.1| Sphingomyelinase C [Bacillus cereus AH676]
Length = 333
Score = 37.5 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 33/136 (24%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I +I GD N N+ + ++ ++
Sbjct: 198 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + S ++ + S+ Q
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTY 317
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDYSDHYPVEATISMK 333
>gi|116198177|ref|XP_001224900.1| hypothetical protein CHGG_07244 [Chaetomium globosum CBS 148.51]
gi|88178523|gb|EAQ85991.1| hypothetical protein CHGG_07244 [Chaetomium globosum CBS 148.51]
Length = 1202
Score = 37.5 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 8/84 (9%), Positives = 20/84 (23%), Gaps = 4/84 (4%)
Query: 39 TDDFWQKMDPDGLLIRFPQEKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + I F + +
Sbjct: 1054 RNPAFRLRAFEEQPIAFAPTYKYDVGTDTYDTSEKRRSPAWCDRLLYRCGGG---RGRIE 1110
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFE 121
Q D ++S H P++ + F+
Sbjct: 1111 QLDYRRHEVRVSDHRPVSGRFRFQ 1134
>gi|115353147|ref|YP_774986.1| endonuclease/exonuclease/phosphatase [Burkholderia ambifaria AMMD]
gi|172062002|ref|YP_001809654.1| endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
MC40-6]
gi|115283135|gb|ABI88652.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria AMMD]
gi|171994519|gb|ACB65438.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
MC40-6]
Length = 271
Score = 37.5 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 29/118 (24%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W + P V+AGDFN N + ++ + Q +
Sbjct: 170 RQMHWIAHWIV-RNAGDDPLVLAGDFNDWRNDSV---ALFGEIGMSEVATLLGQSGRTFP 225
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + LS H P +
Sbjct: 226 AFSPALALDKMFVRGLTPLEWQAPSGE--------------TAWLSDHLPYIARLRLD 269
>gi|291548571|emb|CBL24833.1| Metal-dependent hydrolase [Ruminococcus torques L2-14]
Length = 284
Score = 37.5 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 10/125 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L +Q E ++K K + GDFN N + ++ + G + ++
Sbjct: 162 LKKQWEKMEKLTKSLEKKDRTIWLMGDFNSLDN---VKQEGYELICESGWKDSYCLAEQK 218
Query: 62 TCNVI-------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
V R+ + + + S +S H +
Sbjct: 219 DSGVTVEEEIDGWRDGEGGGAVKDAKRLDYIFCNTQKKVKSSKVVCNGKNYPVVSDHYGV 278
Query: 115 TIEYD 119
IE +
Sbjct: 279 IIEVE 283
>gi|157369152|ref|YP_001477141.1| hypothetical protein Spro_0907 [Serratia proteamaculans 568]
gi|157320916|gb|ABV40013.1| Endonuclease/exonuclease/phosphatase [Serratia proteamaculans 568]
Length = 257
Score = 37.5 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 31/105 (29%), Gaps = 21/105 (20%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q P ++AGDFN ++++ +E R K+
Sbjct: 165 EQIANHQGPVIMAGDFNA---------WSRKRINALYQFASDMALREVNFTDDHRRKAFG 215
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S + S S H PL +E+
Sbjct: 216 RPLDFVFYRNMGVAEASVLVTSA------------SDHNPLLVEF 248
>gi|254236851|ref|ZP_04930174.1| hypothetical protein PACG_02871 [Pseudomonas aeruginosa C3719]
gi|126168782|gb|EAZ54293.1| hypothetical protein PACG_02871 [Pseudomonas aeruginosa C3719]
Length = 379
Score = 37.5 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 36/133 (27%), Gaps = 15/133 (11%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN----------RKINSIGDTDDFWQKMDPDGL 51
L +Q E + D+ P+++ GD N +D +
Sbjct: 248 LERQVETTRTLLDELQARRTPWLLGGDLNLLPPGQYPYLLAPLRAPYREDSELGILSGRF 307
Query: 52 LIRFPQEKEST---CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ E+ S + DR S + + DT ++
Sbjct: 308 PMVPSLEEASGVDQVRWYTHFPNDPRVQGPDRTLDYLFHSPSLTRLDARVRRSDT--LQI 365
Query: 109 STHCPLTIEYDFE 121
S H PL +
Sbjct: 366 SNHLPLAARFLLP 378
>gi|325479409|gb|EGC82505.1| exodeoxyribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
Length = 273
Score = 37.5 bits (85), Expect = 0.69, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 25/137 (18%)
Query: 3 SQQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD----------- 49
+Q W +K+AD + + P + +GDFN I + P
Sbjct: 141 DRQI-WDEKYADYLEGLDKIKPVIASGDFNVAHTPIDLAHPENNHISPGFTDEEREGFTR 199
Query: 50 -------GLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
++ + + +R K+S FL+ + + +
Sbjct: 200 LLARGFTDTFRHLNKDLEGAYTWWAQRVKTSKIN-NSGWRIDYFLVSDRLMERVKSSTII 258
Query: 102 DTRRSKLSTHCPLTIEY 118
++ + H P+ +E
Sbjct: 259 NSGDRQ--DHTPIMLEI 273
>gi|229524241|ref|ZP_04413646.1| hypothetical protein VCA_001827 [Vibrio cholerae bv. albensis
VL426]
gi|229337822|gb|EEO02839.1| hypothetical protein VCA_001827 [Vibrio cholerae bv. albensis
VL426]
Length = 281
Score = 37.5 bits (85), Expect = 0.69, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 20/114 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L D+ P ++AGDFN + + L QE V
Sbjct: 186 QQLTALLDELRDFTGPVIVAGDFNS-------WSEARMALLSTQLASVGLQE------VR 232
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + F SD S H PL + +
Sbjct: 233 FSPDNRTTFINGLPLDHVFYRGLQLEKAEAPISD-------ASDHNPLLVRFRL 279
>gi|198275762|ref|ZP_03208293.1| hypothetical protein BACPLE_01937 [Bacteroides plebeius DSM 17135]
gi|198271391|gb|EDY95661.1| hypothetical protein BACPLE_01937 [Bacteroides plebeius DSM 17135]
Length = 339
Score = 37.5 bits (85), Expect = 0.69, Method: Composition-based stats.
Identities = 18/146 (12%), Positives = 31/146 (21%), Gaps = 31/146 (21%)
Query: 8 WLKKWADQKIK------TGIPFVIAGDFNRKINSIGDTD----DFWQKMDPDGLLIRFPQ 57
W+ + Q +I GDFN + + +L
Sbjct: 194 WVARRIRQAADSVMAERQNPRLIIMGDFNDYPDGKSLQEGIRVSALAGQPESRVLYNLMD 253
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD--------------- 102
++ K LD V++ S
Sbjct: 254 NQQGGTYRYKGEWGVLDQMVVNGGLLQPDARTRTSKEKASILRFPFLLEEDNVYGGDTPF 313
Query: 103 ------TRRSKLSTHCPLTIEYDFEK 122
S H P+ +E E+
Sbjct: 314 RTYKGMRYHGGYSDHLPVLLELIVEE 339
>gi|21225866|ref|NP_631645.1| hypothetical protein SCO7604 [Streptomyces coelicolor A3(2)]
gi|11322393|emb|CAC16706.1| hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 294
Score = 37.5 bits (85), Expect = 0.69, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 26/107 (24%), Gaps = 18/107 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+++ ++ GDFN + D W TC +S
Sbjct: 204 LAKEVARHERAIVVGDFNAVPEASEL-DPMWSLATDTDPQC--HPAPGGTCEPTTDWQSK 260
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
DY + R+ S H L + D
Sbjct: 261 FDYVFLRGVAPREH---------------RVVRTAHSDHDLLYADLD 292
>gi|121726534|ref|ZP_01679783.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|121630987|gb|EAX63366.1| conserved hypothetical protein [Vibrio cholerae V52]
Length = 281
Score = 37.5 bits (85), Expect = 0.69, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 20/114 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L D+ P ++AGDFN + ++ GL T +
Sbjct: 186 QQLTALLDELRDFTGPVIVAGDFNSWSEARM--ALLSSQLASVGLQEVRFSPDNRTTFI- 242
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
N LD+ SD S H PL + +
Sbjct: 243 --NGLPLDHVFYRG--------LQLEKAEAPISD-------ASDHNPLLVRFRL 279
>gi|325105103|ref|YP_004274757.1| domain of unknown function DUF1735 [Pedobacter saltans DSM 12145]
gi|324973951|gb|ADY52935.1| domain of unknown function DUF1735 [Pedobacter saltans DSM 12145]
Length = 402
Score = 37.5 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 21/116 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L T +P ++AG+FN K + F + FP +
Sbjct: 306 QATELYDLLAAY--TNVPVILAGNFNDKATTGTVYQKFSTQFS-------FPCVTCPSNY 356
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ D + + + + S H P + F
Sbjct: 357 PKASPTGNSDMLMFKPS------------DKFRVLNYTLGATSTSDHLPAVADLQF 400
>gi|299067259|emb|CBJ38456.1| conserved protein of unknown function,
endonuclease/exonuclease/phosphatase family [Ralstonia
solanacearum CMR15]
Length = 289
Score = 37.5 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 14/103 (13%), Positives = 25/103 (24%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ VI GDFN K +S L +
Sbjct: 184 LAQTRATVICGDFNCKPDSTPKRLVTVPFSHEVATLYDAWETAHGPTPQPPTFGVHDRTG 243
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + ++ S H P+ +E
Sbjct: 244 WTEPAYACDFMLVSAPLKTRVARVEVNSATQASDHQPMLLELR 286
>gi|297559898|ref|YP_003678872.1| endonuclease/exonuclease/phosphatase [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296844346|gb|ADH66366.1| Endonuclease/exonuclease/phosphatase [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 424
Score = 37.5 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 26/127 (20%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ G PFVIAGD N N D ++ + + +R + D
Sbjct: 294 LPVGAPFVIAGDLNADPNDGDGHPDAITQLLEHPGITDVRPSSQGGRGAAQRQGGANDGH 353
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------------------------ST 110
D + + + + R+ S
Sbjct: 354 GGDPVLDSADFADEPGPGNLRVDYVLPSRTVPARSSGVFWPTVDDPLFRLTGDYPFPSSD 413
Query: 111 HCPLTIE 117
H + ++
Sbjct: 414 HRMVWVD 420
>gi|227495472|ref|ZP_03925788.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
gi|226831019|gb|EEH63402.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436]
Length = 1795
Score = 37.5 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 9/118 (7%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + WA+ GIP + GDFN + + +
Sbjct: 850 EQAAAVANWANTTFA-GIPVFMVGDFNSYSKEDAIIKLAELGFNKIPTVGHSYLFQSRVG 908
Query: 64 NVIK------RNKSSLDYFVIDRDNK-NFLIDNSFSIVSYDQSD-LDTRRSKLSTHCP 113
++ D + + + +S +Y SD T + S H P
Sbjct: 909 SLDHAITNAVGMAIVADQTAKVWEINAHEPVALEYSRKNYTASDLYTTDEFRSSDHNP 966
Score = 34.0 bits (76), Expect = 6.8, Method: Composition-based stats.
Identities = 13/103 (12%), Positives = 26/103 (25%), Gaps = 8/103 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+P + GDFN + ++K+ +G F S +V+ +
Sbjct: 1512 AEVPTFLLGDFNAYSKEDPIVTLGNAGFEKLTGEGHSYVFKGRSGSLDHVLANEGAKALV 1571
Query: 76 FVIDRDNKNFLIDNSFSIVSY-----DQSDLDTRRSKLSTHCP 113
+ + + S H P
Sbjct: 1572 SDTGVKVWEINAHEPVMLEYARRNYNVVDFFRADQWRSSDHNP 1614
>gi|15678949|ref|NP_276066.1| hypothetical protein MTH929 [Methanothermobacter thermautotrophicus
str. Delta H]
gi|2622027|gb|AAB85427.1| unknown [Methanothermobacter thermautotrophicus str. Delta H]
Length = 231
Score = 37.5 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 21/128 (16%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIG-------DTDDFWQKMDPDGLLIR 54
S+ + L + ++ +I GDFN N ++ ++ G
Sbjct: 114 FSEFLDLLYNYIEE---GEDLIIIGGDFNINKNFSPSLRRLALLAEEMTGRLSELGFRDV 170
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL---DTRRSKLSTH 111
+E++ + + I+ R +LS H
Sbjct: 171 LREEEDPFT--------FMTPNGGKYQIDYLFVPEGVKILDVWHPPAGEIIETRPRLSDH 222
Query: 112 CPLTIEYD 119
PL + +
Sbjct: 223 IPLMVTLE 230
>gi|50289263|ref|XP_447062.1| hypothetical protein [Candida glabrata CBS 138]
gi|74609806|sp|Q6FRT2|CCR4_CANGA RecName: Full=Glucose-repressible alcohol dehydrogenase
transcriptional effector; AltName: Full=Carbon
catabolite repressor protein 4; AltName:
Full=Cytoplasmic deadenylase
gi|49526371|emb|CAG59995.1| unnamed protein product [Candida glabrata]
Length = 873
Score = 37.5 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 24/150 (16%), Positives = 34/150 (22%), Gaps = 30/150 (20%)
Query: 5 QGEWLKKWADQKIKTGIP--------FVIAGDFNRKINSI--------------GDTDDF 42
Q L + +K P VI GD N ++S D
Sbjct: 712 QVGVLLDHMETLLKEQNPKQDVKKYPLVICGDLNSYLSSSVYELFSTGRVQHHHDGKDRD 771
Query: 43 WQKMDPDGLLI-------RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS 95
+ D + + N +DY
Sbjct: 772 FGYFSEDNFSHNLALKSSYNCIGELAFTNFTPSFTDVIDYIWFSSQALRVRGLLGEVDSE 831
Query: 96 YDQS-DLDTRRSKLSTHCPLTIEYDFEKGN 124
Y + S H PL Y+F K N
Sbjct: 832 YVSNFIGFPNDKFPSDHIPLLGRYEFLKSN 861
>gi|66828527|ref|XP_647617.1| hypothetical protein DDB_G0268580 [Dictyostelium discoideum AX4]
gi|60475808|gb|EAL73743.1| hypothetical protein DDB_G0268580 [Dictyostelium discoideum AX4]
Length = 1097
Score = 37.5 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN + +K+ + E R+ LD
Sbjct: 86 IIAGDFNNNHDCNSFFGTELRKIIDQDM--LLDTGIEENTPTFPRSMKRLDRIYCHPTLL 143
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N +++ S H P+TI
Sbjct: 144 NQNSKLVVHNTVFNK----------SDHFPITISIQ 169
>gi|320162825|gb|EFW39724.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 284
Score = 37.5 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 32/125 (25%), Gaps = 9/125 (7%)
Query: 5 QGEWLKKWADQKIK---TGIPFVIAGDFNRKINSIGD--TDDFWQKMDPDGLLIRFPQEK 59
Q + L + VIAGDFN + N D + LL + +
Sbjct: 160 QFQALAQAIKASQSTRSATNSIVIAGDFNARENENEHFAHDGYVDAFSAYCLLNPKERSQ 219
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR----SKLSTHCPLT 115
+NK D F + + + LS H L
Sbjct: 220 LQFTWDSTKNKYHADGFGFTCRFDRIVTKRAKVTSLKMIGNSPCVEADSSFYLSDHFGLV 279
Query: 116 IEYDF 120
E
Sbjct: 280 AEVQL 284
>gi|289761021|ref|ZP_06520399.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|289708527|gb|EFD72543.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
Length = 375
Score = 37.5 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 4/121 (3%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+ + Q G ++ GDFN + + + +++ + +T
Sbjct: 253 QVANYIQQN-SAGRAVIVTGDFNARYSDDQSALLQFAQVNGLTDAWVQVEHGPTTPPFAP 311
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD---LDTRRSKLSTHCPLTIEYDFEKGN 124
+ ++D+ + VSY +++ LS H P + + + N
Sbjct: 312 TCMVGNECELLDKIFYRSGQGVTLQAVSYGNEAPKFFNSKGEPLSDHSPAVVGFHYVADN 371
Query: 125 V 125
V
Sbjct: 372 V 372
>gi|66800375|ref|XP_629113.1| hypothetical protein DDB_G0293482 [Dictyostelium discoideum AX4]
gi|60462487|gb|EAL60703.1| hypothetical protein DDB_G0293482 [Dictyostelium discoideum AX4]
Length = 395
Score = 37.5 bits (85), Expect = 0.70, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN + +K+ + E R+ LD
Sbjct: 86 IIAGDFNNNHDCNRFFGTELRKIIDQDM--LLDTGIEENTPTFPRSMKRLDRIYCHPTLL 143
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N +++ S H P+TI
Sbjct: 144 NQNSKLVVHNTVFNK----------SDHFPITITIQ 169
>gi|327294443|ref|XP_003231917.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Trichophyton rubrum CBS 118892]
gi|326465862|gb|EGD91315.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Trichophyton rubrum CBS 118892]
Length = 802
Score = 37.5 bits (85), Expect = 0.71, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 31/126 (24%), Gaps = 25/126 (19%)
Query: 18 KTGIPFVIAGDFNRKINS---------------IGDTDDFWQKMDPDGLLIRFP------ 56
+ IP ++ GDFN + +S D + + G+ F
Sbjct: 652 PSQIPILVCGDFNSRPSSAVYNLLAHGRLEEEHPDLRDRLYGNLTRQGMTHPFTLKSAYS 711
Query: 57 -QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCP 113
+ S N +DY + Y S H
Sbjct: 712 AIGELSFTNYTPGFTDVIDYIWYSSNLLQVTGLLGEVDKEYLQRVPGFPNY-HFPSDHLA 770
Query: 114 LTIEYD 119
L E+
Sbjct: 771 LMAEFS 776
>gi|303238818|ref|ZP_07325350.1| Endonuclease/exonuclease/phosphatase [Acetivibrio cellulolyticus
CD2]
gi|302593697|gb|EFL63413.1| Endonuclease/exonuclease/phosphatase [Acetivibrio cellulolyticus
CD2]
Length = 616
Score = 37.5 bits (85), Expect = 0.71, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 19/122 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q E L + + V+ GD N ++ + L Q
Sbjct: 232 NKQFESL---IENRNSFSKSMVLFGDLNTTS-----WSYGFKNLVKGMNLYDSRQGHGIQ 283
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + +D+ + + S H PL +E K
Sbjct: 284 FSW-----------PTTIPILSVPLDHCLVSKDIKVLKREMGPNLGSDHRPLYVELRISK 332
Query: 123 GN 124
+
Sbjct: 333 TS 334
>gi|296501428|ref|YP_003663128.1| sphingomyelin phosphodiesterase [Bacillus thuringiensis BMB171]
gi|296322480|gb|ADH05408.1| sphingomyelin phosphodiesterase [Bacillus thuringiensis BMB171]
Length = 333
Score = 37.5 bits (85), Expect = 0.71, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 33/136 (24%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I +I GD N N+ + ++ ++
Sbjct: 198 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + S ++ + S+ Q
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTY 317
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDYSDHYPVEATISMK 333
>gi|120612934|ref|YP_972612.1| endonuclease/exonuclease/phosphatase [Acidovorax citrulli AAC00-1]
gi|120591398|gb|ABM34838.1| Endonuclease/exonuclease/phosphatase [Acidovorax citrulli AAC00-1]
Length = 259
Score = 37.5 bits (85), Expect = 0.71, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 29/118 (24%), Gaps = 15/118 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + P ++AGDFN + + + +
Sbjct: 157 QRQLRRVCDLVNT-FPGDDPVIVAGDFNDWRG--RAHEVLRKGAGLHEVFVHAG------ 207
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + + N+ KLS H PL E
Sbjct: 208 ----GRAVRTFPASMPLLALDRIYVRNASVHAPVVLPRKPW--HKLSDHAPLAAEIAL 259
>gi|3036809|emb|CAA18499.1| putative protein [Arabidopsis thaliana]
gi|7270557|emb|CAB81514.1| putative protein [Arabidopsis thaliana]
Length = 641
Score = 37.5 bits (85), Expect = 0.71, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 39/139 (28%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK-- 67
++W + ++ G + GD N + + EK++
Sbjct: 177 RRW-ECLLRQGRRVFVVGDLNIAP---------FAMDRCEAGPDFEKNEKDAFTCWSSSS 226
Query: 68 -----RNKSSLDYFVIDRDNKNFLIDNS---------------FSIVSYDQSDLDTRR-- 105
S +D+ ++ + D + ++ TR
Sbjct: 227 GAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRFKNENMPTRWKG 286
Query: 106 -----SKLSTHCPLTIEYD 119
K S H P+ I +D
Sbjct: 287 GLVTKFKGSDHVPVFISFD 305
>gi|304410511|ref|ZP_07392129.1| conserved hypothetical protein [Shewanella baltica OS183]
gi|307304604|ref|ZP_07584354.1| conserved hypothetical protein [Shewanella baltica BA175]
gi|304350995|gb|EFM15395.1| conserved hypothetical protein [Shewanella baltica OS183]
gi|306912006|gb|EFN42430.1| conserved hypothetical protein [Shewanella baltica BA175]
Length = 870
Score = 37.1 bits (84), Expect = 0.72, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 28/130 (21%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------GLLIRFPQEKESTCNVI 66
P + DF+ + W +D GL+ + +
Sbjct: 704 EDPIRVLTDFDASKSDRDIMTASWTTLDGKVFERQGSKIEKGYGLINLNTKAHGAGTYSY 763
Query: 67 KRNK--SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LSTH 111
N +LD+ + + L+D ++ +S+L K S H
Sbjct: 764 SYNGELGNLDHALANASLAKRLVDIEDWHINSVESNLFEYGKKFSGDLAKSENAFSASDH 823
Query: 112 CPLTIEYDFE 121
P+ + +
Sbjct: 824 DPVIVALSYP 833
>gi|307725679|ref|YP_003908892.1| endonuclease/exonuclease/phosphatase [Burkholderia sp. CCGE1003]
gi|307586204|gb|ADN59601.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. CCGE1003]
Length = 258
Score = 37.1 bits (84), Expect = 0.72, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 25/113 (22%), Gaps = 22/113 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + +P ++ GD N + + + P+ S
Sbjct: 165 QVRLL---LEAFDTPELPVILLGDLNEWF----VWGWPMRALLTRFGRVAAPRTFPS--- 214
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + +V R S H PL
Sbjct: 215 -----------RFPTFALDRVWVHPAARLVDIQVDKSRPARI-ASDHLPLVAR 255
>gi|153001981|ref|YP_001367662.1| endonuclease/exonuclease/phosphatase [Shewanella baltica OS185]
gi|151366599|gb|ABS09599.1| Endonuclease/exonuclease/phosphatase [Shewanella baltica OS185]
Length = 870
Score = 37.1 bits (84), Expect = 0.72, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 28/130 (21%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------GLLIRFPQEKESTCNVI 66
P + DF+ + W +D GL+ + +
Sbjct: 704 EDPIRVLTDFDASKSDRDIMTASWTTLDGKVFERQGSKIEKGYGLINLNTKAHGAGTYSY 763
Query: 67 KRNK--SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LSTH 111
N +LD+ + + L+D ++ +S+L K S H
Sbjct: 764 SYNGELGNLDHALANASLAKRLVDIEDWHINSVESNLFEYGKKFSGDLAKSENAFSASDH 823
Query: 112 CPLTIEYDFE 121
P+ + +
Sbjct: 824 DPVIVALSYP 833
>gi|160876701|ref|YP_001556017.1| endonuclease/exonuclease/phosphatase [Shewanella baltica OS195]
gi|160862223|gb|ABX50757.1| Endonuclease/exonuclease/phosphatase [Shewanella baltica OS195]
gi|315268901|gb|ADT95754.1| conserved hypothetical protein [Shewanella baltica OS678]
Length = 870
Score = 37.1 bits (84), Expect = 0.72, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 28/130 (21%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------GLLIRFPQEKESTCNVI 66
P + DF+ + W +D GL+ + +
Sbjct: 704 EDPIRVLTDFDASKSDRDIMTASWTTLDGKVFERQGSKIEKGYGLINLNTKAHGAGTYSY 763
Query: 67 KRNK--SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LSTH 111
N +LD+ + + L+D ++ +S+L K S H
Sbjct: 764 SYNGELGNLDHALANASLAKRLVDIEDWHINSVESNLFEYGKKFSGDLAKSENAFSASDH 823
Query: 112 CPLTIEYDFE 121
P+ + +
Sbjct: 824 DPVIVALSYP 833
>gi|126173135|ref|YP_001049284.1| endonuclease/exonuclease/phosphatase [Shewanella baltica OS155]
gi|125996340|gb|ABN60415.1| Endonuclease/exonuclease/phosphatase [Shewanella baltica OS155]
Length = 870
Score = 37.1 bits (84), Expect = 0.72, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 37/130 (28%), Gaps = 28/130 (21%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------GLLIRFPQEKESTCNVI 66
P + DF+ + W +D GL+ + +
Sbjct: 704 EDPIRVLTDFDASKSDRDIMTASWTTLDGKVFERQGSKIEKGYGLINLNTKAHGAGTYSY 763
Query: 67 KRNK--SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LSTH 111
N +LD+ + + L+D ++ +S+L K S H
Sbjct: 764 SYNGELGNLDHALANASLAKRLVDIEDWHINSVESNLFEYGKKFSGDLAKSENAFSASDH 823
Query: 112 CPLTIEYDFE 121
P+ + +
Sbjct: 824 DPVIVALSYP 833
>gi|328773337|gb|EGF83374.1| hypothetical protein BATDEDRAFT_9186 [Batrachochytrium
dendrobatidis JAM81]
Length = 580
Score = 37.1 bits (84), Expect = 0.72, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 31/144 (21%), Gaps = 27/144 (18%)
Query: 7 EWLKKWADQKIKTGIP----FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES- 61
L W G ++ GD N S + D I+ +
Sbjct: 426 RLLSVWQKTHRTEGKQPTVSTIVCGDLNSLPQSGVVEFLSQGHVSADHDDIKAFNYEPYS 485
Query: 62 ---------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-S 99
N +DY ++ + S Y S
Sbjct: 486 NGGLTHKLSLKSAYSHVDVMDFTNFTPTFCGVIDYIWYTTNSLSVAGLLSHVDRDYVAKS 545
Query: 100 DLDTRRSKLSTHCPLTIEYDFEKG 123
S H PL + ++
Sbjct: 546 VGFPNAHHPSDHIPLVVSLRPKQA 569
>gi|302678459|ref|XP_003028912.1| hypothetical protein SCHCODRAFT_78560 [Schizophyllum commune H4-8]
gi|300102601|gb|EFI94009.1| hypothetical protein SCHCODRAFT_78560 [Schizophyllum commune H4-8]
Length = 322
Score = 37.1 bits (84), Expect = 0.72, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 24/101 (23%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P I F K D + +D G R ++ +
Sbjct: 222 EPVAINQTFADKYAVTDDQLPDFTLLDLRGQTPRRSVSSNFATFTGFTPPNNASDWGRID 281
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
S + L +S H P+ ++ +
Sbjct: 282 FLFGGSNGGWTSTAYHVDPSLTDDGLYMSDHRPVFVDVSLD 322
>gi|332322201|emb|CCA66222.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1383
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 2/95 (2%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P +I GDFN ++S + + + N + +
Sbjct: 135 PTLIMGDFNEVLSSSERGSGLSSQEGVEDFRNFIQSLGLID--ISSANGRFTWFHGNRKS 192
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + S I Y L +S HCP+
Sbjct: 193 RLDRCLVTSDWIQQYPNLSLQILNRTVSDHCPILA 227
>gi|326481851|gb|EGE05861.1| DNA lyase [Trichophyton equinum CBS 127.97]
Length = 592
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 12/99 (12%), Positives = 19/99 (19%), Gaps = 13/99 (13%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P GD + D F + K +
Sbjct: 227 RPVGSTGDTHDTETPPVLRDL----------CREFHPGRTGM-YTCWNQKVNARPGNYGS 275
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L ++ S+ S HCP+
Sbjct: 276 RIDYILCSDNIR--SWFVESNIQEGLIGSDHCPVYASIS 312
>gi|326471548|gb|EGD95557.1| DNA lyase [Trichophyton tonsurans CBS 112818]
Length = 592
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 12/99 (12%), Positives = 19/99 (19%), Gaps = 13/99 (13%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P GD + D F + K +
Sbjct: 227 RPVGSTGDTHDTETPPVLRDL----------CREFHPGRTGM-YTCWNQKVNARPGNYGS 275
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L ++ S+ S HCP+
Sbjct: 276 RIDYILCSDNIR--SWFVESNIQEGLIGSDHCPVYASIS 312
>gi|291298431|ref|YP_003509709.1| endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
gi|290567651|gb|ADD40616.1| Endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
Length = 278
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 19/116 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E + + V+ GDFN + + + D + +
Sbjct: 182 QAELIIEILG---DAPQRTVLVGDFNAEPGAESIDVIANRLPDAWA----AAGDGDGLTY 234
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +D+ D + + V + S H PL+ + F
Sbjct: 235 PSDNPHARIDFVFAAPD-----VKPAAMAVDAEDPS-------ASDHLPLSGTFAF 278
>gi|228983878|ref|ZP_04144072.1| Sphingomyelinase C [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|228775857|gb|EEM24229.1| Sphingomyelinase C [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 338
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 203 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 262
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + SS D+ L S T
Sbjct: 263 TWDATTNSIAKYNFPDSPAEYLDYIISSKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 322
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 323 NDY-SDHYPVEATISMK 338
>gi|87198716|ref|YP_495973.1| endonuclease/exonuclease/phosphatase [Novosphingobium
aromaticivorans DSM 12444]
gi|87134397|gb|ABD25139.1| Endonuclease/exonuclease/phosphatase [Novosphingobium
aromaticivorans DSM 12444]
Length = 245
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 30/119 (25%), Gaps = 20/119 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + + + G V+ GDFN S G F + FP +
Sbjct: 139 RQQIETICGHIEDHPERGHA-VLMGDFNEWSPSGGALSAFADHLRVLAPGRSFPSRRP-- 195
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ + + + S H P+ E
Sbjct: 196 ----------------VAQLDRIVVSDGLHVDAAGVHHSPLAAV-GSDHLPVWAELRLP 237
>gi|54026467|ref|YP_120709.1| hypothetical protein nfa44940 [Nocardia farcinica IFM 10152]
gi|54017975|dbj|BAD59345.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 313
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 12/118 (10%), Positives = 28/118 (23%), Gaps = 17/118 (14%)
Query: 6 GEWLKKW--ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ L + + P ++ GDFN + D +
Sbjct: 209 ADELARLRTIVENAPADRPALVGGDFNATHDHRQFRDYLTGRFADAADQAGAGHLATYPT 268
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ +D+ ++ + ++ S H L E +
Sbjct: 269 DKWWPAVVGIDHILVAGG---------------RATTVEALDLPGSDHRALVAEIRLD 311
>gi|66802974|ref|XP_635330.1| hypothetical protein DDB_G0291688 [Dictyostelium discoideum AX4]
gi|60463643|gb|EAL61828.1| hypothetical protein DDB_G0291688 [Dictyostelium discoideum AX4]
Length = 1134
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 22/96 (22%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN N DD Q Q + +
Sbjct: 512 IIAGDFNCIHNDNSLLDDIIQSY--TYQHHLIDQGEFKNTPTHTHGNRLDRIYTQYNRID 569
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + LS H P++
Sbjct: 570 PENIYTQVHQIPSS----------LSDHNPISTTIS 595
>gi|326554511|gb|ADZ89150.1| Endonuclease/exonuclease/phosphatase family [Brucella melitensis
M5-90]
Length = 271
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + + +P ++ GD N + + +
Sbjct: 153 EQQAETILSALQE--ADTLPTLLIGDLN-------EWRIGKRSSLSALMPTFNHVATAVP 203
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L I S + + R S H P+ D +
Sbjct: 204 SFPSR---------FPVLALDRVLGAPDNLITSVEVHNTPLARL-ASDHLPIKAHLDLKT 253
Query: 123 G 123
Sbjct: 254 A 254
>gi|306842367|ref|ZP_07475024.1| Endonuclease/exonuclease/phosphatase [Brucella sp. BO2]
gi|306287506|gb|EFM58971.1| Endonuclease/exonuclease/phosphatase [Brucella sp. BO2]
Length = 285
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + + +P ++ GD N + + +
Sbjct: 167 EQQAETILSALQE--ADTLPTLLIGDLN-------EWRIGKRSSLSALMPTFNHVATAVP 217
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L I S + + R S H P+ D +
Sbjct: 218 SFPSR---------FPVLALDRVLGAPDNLITSVEVHNTPLARL-ASDHLPIKAHLDLKT 267
Query: 123 G 123
Sbjct: 268 A 268
>gi|306846047|ref|ZP_07478613.1| Endonuclease/exonuclease/phosphatase [Brucella sp. BO1]
gi|306273536|gb|EFM55387.1| Endonuclease/exonuclease/phosphatase [Brucella sp. BO1]
Length = 285
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + + +P ++ GD N + + +
Sbjct: 167 EQQAETILSALQE--ADTLPTLLIGDLN-------EWRIGKRSSLSALMPTFNHVATAVP 217
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L I S + + R S H P+ D +
Sbjct: 218 SFPSR---------FPVLALDRVLGAPDNLITSVEVHNTPLARL-ASDHLPIKAHLDLKT 267
Query: 123 G 123
Sbjct: 268 A 268
>gi|254700252|ref|ZP_05162080.1| Endonuclease/exonuclease/phosphatase [Brucella suis bv. 5 str. 513]
gi|261750746|ref|ZP_05994455.1| endonuclease/exonuclease/phosphatase [Brucella suis bv. 5 str. 513]
gi|261740499|gb|EEY28425.1| endonuclease/exonuclease/phosphatase [Brucella suis bv. 5 str. 513]
Length = 285
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + + +P ++ GD N + + +
Sbjct: 167 EQQAETILSALQE--ADTLPTLLIGDLN-------EWRIGKRSSLSALMPTFNHVATAVP 217
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L I S + + R S H P+ D +
Sbjct: 218 SFPSR---------FPVLALDRVLGAPDNLITSVEVHNTPLARL-ASDHLPIKAHLDLKT 267
Query: 123 G 123
Sbjct: 268 A 268
>gi|229108284|ref|ZP_04237904.1| Sphingomyelinase C [Bacillus cereus Rock1-15]
gi|228675169|gb|EEL30393.1| Sphingomyelinase C [Bacillus cereus Rock1-15]
Length = 333
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 33/136 (24%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I +I GD N N+ + ++ ++
Sbjct: 198 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGYTA 257
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + S ++ + S+ Q
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTY 317
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDYSDHYPVEATISMK 333
>gi|225629507|ref|ZP_03787540.1| endonuclease/exonuclease/phosphatase family protein [Brucella ceti
str. Cudo]
gi|260167808|ref|ZP_05754619.1| endonuclease/exonuclease/phosphatase family protein [Brucella sp.
F5/99]
gi|261757244|ref|ZP_06000953.1| endonuclease/exonuclease/phosphatase family [Brucella sp. F5/99]
gi|225616003|gb|EEH13052.1| endonuclease/exonuclease/phosphatase family protein [Brucella ceti
str. Cudo]
gi|261737228|gb|EEY25224.1| endonuclease/exonuclease/phosphatase family [Brucella sp. F5/99]
Length = 285
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + + +P ++ GD N + + +
Sbjct: 167 EQQAETILSALQE--ADTLPTLLIGDLN-------EWRIGKRSSLSALMPTFNHVATAVP 217
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L I S + + R S H P+ D +
Sbjct: 218 SFPSR---------FPVLALDRVLGAPDNLITSVEVHNTPLARL-ASDHLPIKAHLDLKT 267
Query: 123 G 123
Sbjct: 268 A 268
>gi|224110054|ref|XP_002315398.1| predicted protein [Populus trichocarpa]
gi|222864438|gb|EEF01569.1| predicted protein [Populus trichocarpa]
Length = 443
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 11/126 (8%), Positives = 22/126 (17%), Gaps = 22/126 (17%)
Query: 15 QKIKTGIPFVIAGDFN-------------------RKINSIG---DTDDFWQKMDPDGLL 52
+KI + GD N + + +
Sbjct: 285 EKIMDHDRVIWLGDLNYRIALSYSETRKLLEQYNWDGLFDKDQLKIEREAGRVFGGWKEG 344
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ R + + Q S+ S H
Sbjct: 345 KIYFAPTYKYSYNSDIYAGETIETQKKRRTPAWCDRILWHGGGIHQLSYVRGESRFSDHR 404
Query: 113 PLTIEY 118
P+ +
Sbjct: 405 PVCATF 410
>gi|153213782|ref|ZP_01948990.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|124115706|gb|EAY34526.1| conserved hypothetical protein [Vibrio cholerae 1587]
Length = 281
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 20/114 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L D+ P ++AGDFN + + L QE V
Sbjct: 186 QQLTALLDELRDFTGPVIVAGDFNS-------WSEARMALLSTQLASVGLQE------VR 232
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + F SD S H PL + +
Sbjct: 233 FSPDNRTTFINGLPLDHVFYRGLQLEKAEAPISD-------ASDHNPLLVRFRL 279
>gi|119482243|ref|XP_001261150.1| endonuclease/exonuclease/phosphatase family protein [Neosartorya
fischeri NRRL 181]
gi|119409304|gb|EAW19253.1| endonuclease/exonuclease/phosphatase family protein [Neosartorya
fischeri NRRL 181]
Length = 300
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 22/105 (20%), Gaps = 9/105 (8%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
++AGDFN + + + +
Sbjct: 196 VLLAGDFNSQETQEAYSVLTGSESSLVDTAKAVEPSQHYGDY--YTWTGFGYEGEDPTRI 253
Query: 83 KNFLIDN------SFSIVSYDQSDLDTR-RSKLSTHCPLTIEYDF 120
L+ S+ + Y LS H + +
Sbjct: 254 DYILMGPGKNKLGSWKVNGYAVLANRFDSGVYLSDHRAVVADVTL 298
>gi|86156653|ref|YP_463438.1| endonuclease/exonuclease/phosphatase [Anaeromyxobacter dehalogenans
2CP-C]
gi|85773164|gb|ABC80001.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter dehalogenans
2CP-C]
Length = 389
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 6/103 (5%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI--KRNKSSLDYFVI 78
P V+ GD N + + G+ + + C + + +
Sbjct: 276 RPVVLVGDLNSEPGTEGEAVLAGAGFRDVWAAVNGDAAGLTCCFPEDLRTGPGDPGFADL 335
Query: 79 DRDNKNFLIDNSFSIVSYDQ----SDLDTRRSKLSTHCPLTIE 117
L+ S + + S H + E
Sbjct: 336 STRIDYVLVRGPAQPWSAEVVGETAAERVGGLWPSDHAGVAAE 378
>gi|17988584|ref|NP_541217.1| dioxygenase [Brucella melitensis bv. 1 str. 16M]
gi|256043927|ref|ZP_05446845.1| dioxygenase [Brucella melitensis bv. 1 str. Rev.1]
gi|260565101|ref|ZP_05835586.1| endonuclease/exonuclease/phosphatase family protein [Brucella
melitensis bv. 1 str. 16M]
gi|265990345|ref|ZP_06102902.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 1
str. Rev.1]
gi|17984384|gb|AAL53481.1| dioxygenase [Brucella melitensis bv. 1 str. 16M]
gi|260152744|gb|EEW87837.1| endonuclease/exonuclease/phosphatase family protein [Brucella
melitensis bv. 1 str. 16M]
gi|263001014|gb|EEZ13704.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 1
str. Rev.1]
Length = 285
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + + +P ++ GD N + + +
Sbjct: 167 EQQAETILSALQE--ADTLPTLLIGDLN-------EWRIGKRSSLSALMPTFNHVATAVP 217
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L I S + + R S H P+ D +
Sbjct: 218 SFPSR---------FPVLALDRVLGAPDNLITSVEVHNTPLARL-ASDHLPIKAHLDLKT 267
Query: 123 G 123
Sbjct: 268 A 268
>gi|33592450|ref|NP_880094.1| hypothetical protein BP1340 [Bordetella pertussis Tohama I]
gi|33601810|ref|NP_889370.1| hypothetical protein BB2834 [Bordetella bronchiseptica RB50]
gi|33572096|emb|CAE41632.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|33576247|emb|CAE33326.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
gi|332381866|gb|AEE66713.1| hypothetical protein BPTD_1326 [Bordetella pertussis CS]
Length = 252
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 28/118 (23%), Gaps = 15/118 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L ++ Q + ++AGDFN + L +
Sbjct: 150 QEQLRRLCQYLRQHVPAQAAALLAGDFNDWRQRADA-TLARCGLADVHRLALGHAARTFP 208
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N S S+LS H PL E
Sbjct: 209 AAC------------PLLRLDRIYVRNVAGSEPRRLSRRPW--SRLSDHVPLAAEVTL 252
>gi|23500781|ref|NP_700221.1| endonuclease/exonuclease/phosphatase family protein [Brucella suis
1330]
gi|62317886|ref|YP_223739.1| endonuclease/exonuclease/phosphatase family protein [Brucella
abortus bv. 1 str. 9-941]
gi|83269864|ref|YP_419155.1| endonuclease/exonuclease/phosphatase family protein [Brucella
melitensis biovar Abortus 2308]
gi|161621107|ref|YP_001594993.1| endonuclease/exonuclease/phosphatase [Brucella canis ATCC 23365]
gi|163845172|ref|YP_001622827.1| hypothetical protein BSUIS_B1055 [Brucella suis ATCC 23445]
gi|189023136|ref|YP_001932877.1| Endonuclease/exonuclease/phosphatase family [Brucella abortus S19]
gi|225686811|ref|YP_002734783.1| endonuclease/exonuclease/phosphatase [Brucella melitensis ATCC
23457]
gi|237817428|ref|ZP_04596420.1| endonuclease/exonuclease/phosphatase family protein [Brucella
abortus str. 2308 A]
gi|254690629|ref|ZP_05153883.1| Endonuclease/exonuclease/phosphatase [Brucella abortus bv. 6 str.
870]
gi|254696066|ref|ZP_05157894.1| Endonuclease/exonuclease/phosphatase [Brucella abortus bv. 3 str.
Tulya]
gi|254699176|ref|ZP_05161004.1| Endonuclease/exonuclease/phosphatase [Brucella abortus bv. 2 str.
86/8/59]
gi|254705484|ref|ZP_05167312.1| Endonuclease/exonuclease/phosphatase [Brucella pinnipedialis
M163/99/10]
gi|254712812|ref|ZP_05174623.1| Endonuclease/exonuclease/phosphatase [Brucella ceti M644/93/1]
gi|254715882|ref|ZP_05177693.1| Endonuclease/exonuclease/phosphatase [Brucella ceti M13/05/1]
gi|254732620|ref|ZP_05191198.1| Endonuclease/exonuclease/phosphatase [Brucella abortus bv. 4 str.
292]
gi|256015823|ref|YP_003105832.1| endonuclease/exonuclease/phosphatase family protein [Brucella
microti CCM 4915]
gi|256058783|ref|ZP_05448999.1| Endonuclease/exonuclease/phosphatase [Brucella neotomae 5K33]
gi|256111006|ref|ZP_05452068.1| Endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 3
str. Ether]
gi|256157291|ref|ZP_05455209.1| Endonuclease/exonuclease/phosphatase [Brucella ceti M490/95/1]
gi|256253732|ref|ZP_05459268.1| Endonuclease/exonuclease/phosphatase [Brucella ceti B1/94]
gi|256255809|ref|ZP_05461345.1| Endonuclease/exonuclease/phosphatase [Brucella abortus bv. 9 str.
C68]
gi|256262053|ref|ZP_05464585.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 2
str. 63/9]
gi|260545119|ref|ZP_05820940.1| endonuclease/exonuclease/phosphatase family protein [Brucella
abortus NCTC 8038]
gi|260756200|ref|ZP_05868548.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 6 str.
870]
gi|260760431|ref|ZP_05872779.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 4 str.
292]
gi|260763671|ref|ZP_05876003.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 2 str.
86/8/59]
gi|260882024|ref|ZP_05893638.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 9 str.
C68]
gi|261216498|ref|ZP_05930779.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 3 str.
Tulya]
gi|261217643|ref|ZP_05931924.1| endonuclease/exonuclease/phosphatase [Brucella ceti M13/05/1]
gi|261220866|ref|ZP_05935147.1| endonuclease/exonuclease/phosphatase [Brucella ceti B1/94]
gi|261312890|ref|ZP_05952087.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis
M163/99/10]
gi|261320519|ref|ZP_05959716.1| endonuclease/exonuclease/phosphatase [Brucella ceti M644/93/1]
gi|261322721|ref|ZP_05961918.1| endonuclease/exonuclease/phosphatase [Brucella neotomae 5K33]
gi|265992544|ref|ZP_06105101.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 3
str. Ether]
gi|265995778|ref|ZP_06108335.1| endonuclease/exonuclease/phosphatase [Brucella ceti M490/95/1]
gi|297249181|ref|ZP_06932882.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 5 str.
B3196]
gi|23464438|gb|AAN34226.1| endonuclease/exonuclease/phosphatase family protein [Brucella suis
1330]
gi|62198079|gb|AAX76378.1| endonuclease/exonuclease/phosphatase family protein [Brucella
abortus bv. 1 str. 9-941]
gi|82940138|emb|CAJ13186.1| Endonuclease/exonuclease/phosphatase family [Brucella melitensis
biovar Abortus 2308]
gi|161337918|gb|ABX64222.1| Endonuclease/exonuclease/phosphatase [Brucella canis ATCC 23365]
gi|163675895|gb|ABY40005.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|189021710|gb|ACD74431.1| Endonuclease/exonuclease/phosphatase family [Brucella abortus S19]
gi|225642916|gb|ACO02829.1| Endonuclease/exonuclease/phosphatase [Brucella melitensis ATCC
23457]
gi|237788241|gb|EEP62457.1| endonuclease/exonuclease/phosphatase family protein [Brucella
abortus str. 2308 A]
gi|255998483|gb|ACU50170.1| endonuclease/exonuclease/phosphatase family protein [Brucella
microti CCM 4915]
gi|260098390|gb|EEW82264.1| endonuclease/exonuclease/phosphatase family protein [Brucella
abortus NCTC 8038]
gi|260670749|gb|EEX57689.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 4 str.
292]
gi|260674092|gb|EEX60913.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 2 str.
86/8/59]
gi|260676308|gb|EEX63129.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 6 str.
870]
gi|260871552|gb|EEX78621.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 9 str.
C68]
gi|260918105|gb|EEX84966.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 3 str.
Tulya]
gi|260919450|gb|EEX86103.1| endonuclease/exonuclease/phosphatase [Brucella ceti B1/94]
gi|260922732|gb|EEX89300.1| endonuclease/exonuclease/phosphatase [Brucella ceti M13/05/1]
gi|261293209|gb|EEX96705.1| endonuclease/exonuclease/phosphatase [Brucella ceti M644/93/1]
gi|261298701|gb|EEY02198.1| endonuclease/exonuclease/phosphatase [Brucella neotomae 5K33]
gi|261301916|gb|EEY05413.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis
M163/99/10]
gi|262550075|gb|EEZ06236.1| endonuclease/exonuclease/phosphatase [Brucella ceti M490/95/1]
gi|262763414|gb|EEZ09446.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 3
str. Ether]
gi|263091743|gb|EEZ16074.1| endonuclease/exonuclease/phosphatase [Brucella melitensis bv. 2
str. 63/9]
gi|297173050|gb|EFH32414.1| endonuclease/exonuclease/phosphatase [Brucella abortus bv. 5 str.
B3196]
gi|326411221|gb|ADZ68285.1| Endonuclease/exonuclease/phosphatase family [Brucella melitensis
M28]
Length = 285
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + + +P ++ GD N + + +
Sbjct: 167 EQQAETILSALQE--ADTLPTLLIGDLN-------EWRIGKRSSLSALMPTFNHVATAVP 217
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L I S + + R S H P+ D +
Sbjct: 218 SFPSR---------FPVLALDRVLGAPDNLITSVEVHNTPLARL-ASDHLPIKAHLDLKT 267
Query: 123 G 123
Sbjct: 268 A 268
>gi|107023983|ref|YP_622310.1| endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia AU
1054]
gi|116691070|ref|YP_836693.1| endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
HI2424]
gi|170734404|ref|YP_001766351.1| endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
MC0-3]
gi|254246936|ref|ZP_04940257.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
PC184]
gi|105894172|gb|ABF77337.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia AU
1054]
gi|116649159|gb|ABK09800.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
HI2424]
gi|124871712|gb|EAY63428.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
PC184]
gi|169817646|gb|ACA92229.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
MC0-3]
Length = 271
Score = 37.1 bits (84), Expect = 0.73, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 29/118 (24%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W + P ++AGDFN N + ++ + + +
Sbjct: 170 RQMHWIAHWIV-RNAGDGPLMLAGDFNDWRNDSV---ALFGEIGLSEVATLLGESGRTFP 225
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + LS H P +
Sbjct: 226 AFSPALALDKMFVRGLTPLEWRAPSGE--------------AAWLSDHLPYIARLRLD 269
>gi|229028217|ref|ZP_04184357.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1271]
gi|228733091|gb|EEL83933.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH1271]
Length = 263
Score = 37.1 bits (84), Expect = 0.74, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + GDFN ++ G + + L ++ ++
Sbjct: 156 DRLMERVNRDELSFLMGDFNNNARLQGEGYEYMMQKGLYDTYELA----AEKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S + S DT R+ +S H + ++ D
Sbjct: 212 EIAGWDKNKHNLRIDLILCNQSEKVRSSKVIFNDTNRNVISDHFGVEVQVD 262
>gi|225438167|ref|XP_002262729.1| PREDICTED: hypothetical protein, partial [Vitis vinifera]
Length = 1167
Score = 37.1 bits (84), Expect = 0.74, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 11/104 (10%)
Query: 20 GIPFVIAGDFNRK------INSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
P+ + GDFN + + + + L +
Sbjct: 559 DDPWCLGGDFNITLFQHERSSQRRISSAMRRFAEFVDDLELVDLPLQGGEFTWSGG---- 614
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ S+ + + S H P+ +E
Sbjct: 615 LNNQAWARLDRFLVSPSW-LDQFSGITQGRLSRPTSDHFPIVLE 657
>gi|221104337|ref|XP_002156804.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
Length = 506
Score = 37.1 bits (84), Expect = 0.74, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 7/122 (5%)
Query: 5 QGEWLKKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + GDFN + N + K++ +L + S
Sbjct: 385 QANDCINVIESMLNKHKNSSVIWCGDFNSEENEECHSRIKEAKINVKNVLNELSSKM-SF 443
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS----KLSTHCPLTIEY 118
+R S + + ++ D+ D+ T R S H L +++
Sbjct: 444 TTWKRRPDSEKKQVIDYIFYSSEYFSPENVLLPPDEVDIPTERFPSFNHPSDHISLCVDF 503
Query: 119 DF 120
+
Sbjct: 504 SY 505
>gi|147835479|emb|CAN72819.1| hypothetical protein VITISV_012036 [Vitis vinifera]
Length = 818
Score = 37.1 bits (84), Expect = 0.74, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 17/107 (15%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD---------FWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
P+ + GDFN + + F + +D GL+ Q +E T
Sbjct: 701 EDPWCLGGDFNITLFQKERSSQRRINSAMRRFAEIVDDLGLVDLPLQGEEFT--WNGGLN 758
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ FL+ S+ +S H P+ +E
Sbjct: 759 NQAW-----ARLDKFLMSPSWLDQFSGV-TQSRLSRPISDHFPIVLE 799
>gi|294778476|ref|ZP_06743899.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
vulgatus PC510]
gi|294447738|gb|EFG16315.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
vulgatus PC510]
Length = 336
Score = 37.1 bits (84), Expect = 0.75, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 28/132 (21%), Gaps = 25/132 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFW----QKMDPDGLLIRFPQEKESTCNVIKRNKS 71
++ +I GDFN + + L ++ +
Sbjct: 205 NLRQHPNVMIMGDFNDYPTNNSIAKVLGAVAPKGEVQAKKLYNLMDGRKEGTYRYRGEWG 264
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT---------------------RRSKLST 110
LD ++ S S
Sbjct: 265 ILDQLIVSGFLLQGHDGICTSYDKAQILRHPFLLEEDEKYGGDIPSRTYWGKKYHGGYSD 324
Query: 111 HCPLTIEYDFEK 122
H P+ ++++ K
Sbjct: 325 HLPVCVDFEIGK 336
>gi|227538285|ref|ZP_03968334.1| endonuclease/exonuclease/phosphatase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241800|gb|EEI91815.1| endonuclease/exonuclease/phosphatase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 326
Score = 37.1 bits (84), Expect = 0.75, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 10/126 (7%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ L + + ++ GDFN + D + K + + K ++
Sbjct: 200 MDQLASFIKEH-SKDKAILLMGDFNAHYSFELDNVRNFIKETRMIDTWVYLENKGIVPHI 258
Query: 66 IKRNKSSLD--YFVIDRDNKNFLIDNSFSIV----SYDQSD---LDTRRSKLSTHCPLTI 116
+ + NS + Y + D LS HC +++
Sbjct: 259 DPIYSAGDILAIRKDKESIDKIMFRNSADLHFIPERYTIENRLFTDKSGIPLSDHCAVSL 318
Query: 117 EYDFEK 122
+ +E+
Sbjct: 319 SFSWER 324
>gi|161526218|ref|YP_001581230.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans ATCC
17616]
gi|189349068|ref|YP_001944696.1| metal-dependent hydrolase [Burkholderia multivorans ATCC 17616]
gi|221199701|ref|ZP_03572744.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD2M]
gi|221208694|ref|ZP_03581694.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD2]
gi|221215535|ref|ZP_03588498.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD1]
gi|160343647|gb|ABX16733.1| Endonuclease/exonuclease/phosphatase [Burkholderia multivorans ATCC
17616]
gi|189333090|dbj|BAG42160.1| metal-dependent hydrolase [Burkholderia multivorans ATCC 17616]
gi|221164523|gb|EED97006.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD1]
gi|221171505|gb|EEE03952.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD2]
gi|221179940|gb|EEE12344.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD2M]
Length = 271
Score = 37.1 bits (84), Expect = 0.75, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W + P V+AGDFN N + ++ + +
Sbjct: 170 RQMHWIAHWIV-RNAGDDPLVLAGDFNDWRNDSV---AVFGEIGLSEVATLLGE------ 219
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + +D+ L + S + + LS H P +
Sbjct: 220 -SGRTFPAFSPALALDKMFVRGLTPLEWRAPSSETAW-------LSDHLPYIARLRLD 269
>gi|254225771|ref|ZP_04919376.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|125621677|gb|EAZ50006.1| conserved hypothetical protein [Vibrio cholerae V51]
Length = 281
Score = 37.1 bits (84), Expect = 0.75, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 20/114 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L D+ P ++AGDFN + + L QE V
Sbjct: 186 QQLTALLDELRDFTGPVIVAGDFNS-------WSEARMALLSTQLASVGLQE------VR 232
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + F SD S H PL + +
Sbjct: 233 FSPDNRTTFINGLPLDHVFYRGLQLEKAEAPISD-------ASDHNPLLVRFRL 279
>gi|269861372|ref|XP_002650396.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Enterocytozoon bieneusi H348]
gi|263405653|sp|B7XK66|CCR4_ENTBH RecName: Full=Probable glucose-repressible alcohol dehydrogenase
transcriptional effector homolog; AltName: Full=Carbon
catabolite repressor protein 4; AltName:
Full=Cytoplasmic deadenylase
gi|220066167|gb|EED43664.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Enterocytozoon bieneusi H348]
Length = 481
Score = 37.1 bits (84), Expect = 0.75, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 36/131 (27%), Gaps = 19/131 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM------------------DPDGLL 52
++ +K K V+ GDFN NS +K+ L
Sbjct: 350 EFLKEKYK-HAHIVLQGDFNSLQNSHVYQYIINRKLPTNIFDPWDYGSLNNGVTHSLTLR 408
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + N K+ +DY + I + + S H
Sbjct: 409 NAYDGHDITFTNFTPSFKAVIDYIFYSKYLNLISIISPIEDEYTKTTIGLPNIHFPSDHI 468
Query: 113 PLTIEYDFEKG 123
+ ++ F+
Sbjct: 469 LIGAKFQFKSS 479
>gi|212694729|ref|ZP_03302857.1| hypothetical protein BACDOR_04261 [Bacteroides dorei DSM 17855]
gi|212662708|gb|EEB23282.1| hypothetical protein BACDOR_04261 [Bacteroides dorei DSM 17855]
Length = 334
Score = 37.1 bits (84), Expect = 0.75, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 26/109 (23%), Gaps = 21/109 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q + L + + P ++ GDFN S ++
Sbjct: 234 NRQADLLANAIAE---SPYPVIVCGDFNDIPASYVYRKISRS---------LQDCFLQAG 281
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ D L +F + Y S H
Sbjct: 282 RTWKGSYQRWGD----FLRIDYTLCSPAFQVNCYQLVSNPW-----SDH 321
>gi|299145010|ref|ZP_07038078.1| putative endonuclease/exonuclease/phosphatase family protein
[Bacteroides sp. 3_1_23]
gi|298515501|gb|EFI39382.1| putative endonuclease/exonuclease/phosphatase family protein
[Bacteroides sp. 3_1_23]
Length = 264
Score = 37.1 bits (84), Expect = 0.76, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 32/119 (26%), Gaps = 27/119 (22%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----TDDFWQKMDPDGLLIRFPQEK 59
+Q + + +Q P ++ GD N + S +
Sbjct: 166 KQIDEILACVEQL---DKPVILGGDLNSRRGSATMAAFQKYFTVNCLSDGAPWTVPVPSP 222
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
C+ + + +F++ +YD + S H P+ Y
Sbjct: 223 AYACDW-----------------LIYTPNEAFTVKAYDVCYWADKE---SDHYPVVATY 261
>gi|242038627|ref|XP_002466708.1| hypothetical protein SORBIDRAFT_01g012670 [Sorghum bicolor]
gi|241920562|gb|EER93706.1| hypothetical protein SORBIDRAFT_01g012670 [Sorghum bicolor]
Length = 521
Score = 37.1 bits (84), Expect = 0.76, Method: Composition-based stats.
Identities = 8/74 (10%), Positives = 15/74 (20%)
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL 101
F + + R + R + + Q
Sbjct: 402 FGRVFAGWKEGRIYFPPTYKYSYNSDRYAGDDMHPNEKRRTPAWCDRILWYGRGLTQLCY 461
Query: 102 DTRRSKLSTHCPLT 115
S+ S H P+
Sbjct: 462 VRGESRFSDHRPVY 475
>gi|228919526|ref|ZP_04082890.1| Sphingomyelinase C [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|228840169|gb|EEM85446.1| Sphingomyelinase C [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
Length = 333
Score = 37.1 bits (84), Expect = 0.76, Method: Composition-based stats.
Identities = 12/136 (8%), Positives = 32/136 (23%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I +I GD N + + ++ ++
Sbjct: 198 QLKEIQDFIKNKNIPKNEYVLIGGDMNVNKINTENKNDSEYASMFKTLNASVPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + S ++ + S+ Q
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTY 317
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDYSDHYPVEATLSMK 333
>gi|255584843|ref|XP_002533138.1| type I inositol polyphosphate 5-phosphatase, putative [Ricinus
communis]
gi|223527066|gb|EEF29250.1| type I inositol polyphosphate 5-phosphatase, putative [Ricinus
communis]
Length = 549
Score = 37.1 bits (84), Expect = 0.76, Method: Composition-based stats.
Identities = 13/126 (10%), Positives = 26/126 (20%), Gaps = 22/126 (17%)
Query: 15 QKIKTGIPFVIAGDFN----------RKINSIGDTDDFW------------QKMDPDGLL 52
++I + GD N R + D D + +
Sbjct: 384 ERIIDHDRIICLGDLNYRVALSYEEARILLEGNDWDALLEKDQLNMEREAGRVFNGFSEG 443
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ R + + +Q S+ S H
Sbjct: 444 RILFAPTYKYSHNSDSYAGETVKSRKKRRTPAWCDRILWRGRGIEQLSYIRGESRFSDHR 503
Query: 113 PLTIEY 118
P+ +
Sbjct: 504 PVCAVF 509
>gi|324514699|gb|ADY45957.1| Unknown [Ascaris suum]
Length = 410
Score = 37.1 bits (84), Expect = 0.77, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 39/127 (30%), Gaps = 21/127 (16%)
Query: 18 KTGIPFVIAGDFN------------RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ GD N ++N+I D+ +D L R +E ++ +
Sbjct: 170 DENNSVIWLGDMNWRVDTLSTQQMFDRLNTIASDDEMDALVDEVDQLRRARREGKAFTDF 229
Query: 66 IK---RNKSSLDYFVIDRDNKNFLIDNSFSIVSYD------QSDLDTRRSKLSTHCPLTI 116
+ + V + + + + Y + D R +S H P+
Sbjct: 230 SEAPIHFAPTYRIIVGRTRFDSERVPSWCDRILYRGSNLVCEHYRDNRTITISDHFPVIA 289
Query: 117 EYDFEKG 123
+ ++
Sbjct: 290 RFRYKAS 296
>gi|302879657|ref|YP_003848221.1| Endonuclease/exonuclease/phosphatase [Gallionella capsiferriformans
ES-2]
gi|302582446|gb|ADL56457.1| Endonuclease/exonuclease/phosphatase [Gallionella capsiferriformans
ES-2]
Length = 249
Score = 37.1 bits (84), Expect = 0.77, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 14/115 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L ++ +I + +IAGDFN N ++ +
Sbjct: 146 QTRALIEYVQHEIPPDVQVIIAGDFNDWRN--QMGAVIASELGMHDVFQL------HGGR 197
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
V + + L + + V +LS H ++
Sbjct: 198 VARSFPARLP-LFRLDRIYMRGFTVAQAEVHAG-----GAWQRLSDHAAISATLQ 246
>gi|242048876|ref|XP_002462182.1| hypothetical protein SORBIDRAFT_02g021140 [Sorghum bicolor]
gi|241925559|gb|EER98703.1| hypothetical protein SORBIDRAFT_02g021140 [Sorghum bicolor]
Length = 270
Score = 37.1 bits (84), Expect = 0.77, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 1/115 (0%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK-ESTCN 64
E+L + + P+ + GDFN +N +D + + +
Sbjct: 101 VEFLDELLAFRNGVDGPWCVCGDFNMILNRAEKNNDRIDRRGMARFRAFVNSAQLDEVSL 160
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+R S + + + + + + + L + S S HCPL + +D
Sbjct: 161 AGRRFTWSSGTELSMLELLDRVFVTADWLTQFLNHLLKSLSSDCSDHCPLLLNFD 215
>gi|229154378|ref|ZP_04282498.1| Sphingomyelinase C [Bacillus cereus ATCC 4342]
gi|228629202|gb|EEK85909.1| Sphingomyelinase C [Bacillus cereus ATCC 4342]
Length = 338
Score = 37.1 bits (84), Expect = 0.77, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 203 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 262
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + SS D+ L S T
Sbjct: 263 TWDATTNSIAKYNFPDSPAEYLDYIISSKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 322
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 323 NDY-SDHYPVEATISMK 338
>gi|222624228|gb|EEE58360.1| hypothetical protein OsJ_09496 [Oryza sativa Japonica Group]
Length = 576
Score = 37.1 bits (84), Expect = 0.77, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 32/133 (24%), Gaps = 22/133 (16%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIR---------FPQEK 59
+ I + GD N ++ W+ + L E
Sbjct: 403 ETILEHERIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQLRIEQRGGRVFVGWNEG 462
Query: 60 ESTCNVIKRNKSSLD-------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + ++ D + + + Q S+ S H
Sbjct: 463 KIYFPPTYKYSNNSDKYAGDDMNQKEKKRTPAWCDRILWYGRGLSQLSYVRGESRFSDHR 522
Query: 113 PLTIEYDFEKGNV 125
P+ + E ++
Sbjct: 523 PVYSVFSAEVESI 535
>gi|221212763|ref|ZP_03585739.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD1]
gi|221166976|gb|EED99446.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans
CGD1]
Length = 285
Score = 37.1 bits (84), Expect = 0.77, Method: Composition-based stats.
Identities = 11/101 (10%), Positives = 25/101 (24%), Gaps = 1/101 (0%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
++ GDFN +S + +D + +
Sbjct: 184 AQSRDAILCGDFNSAFDSAAYRR-MLEPIDGAPAFVDAWIAQHPGRTPPPTAGVYDTAQW 242
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
D + +++ + S H P+ +E
Sbjct: 243 SDGPLACDFAFVTDTLLPRLARCEIDGAVRASDHQPIVLEL 283
>gi|254446687|ref|ZP_05060162.1| endonuclease/exonuclease/phosphatase family [Verrucomicrobiae
bacterium DG1235]
gi|198256112|gb|EDY80421.1| endonuclease/exonuclease/phosphatase family [Verrucomicrobiae
bacterium DG1235]
Length = 281
Score = 37.1 bits (84), Expect = 0.77, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 34/124 (27%), Gaps = 22/124 (17%)
Query: 4 QQGEWLKKWADQKIKTGI---PFVIAGDFNRKI--NSIGDTDDFWQKMDPDGLLIRFPQE 58
+Q + L Q+ P +I GDFN +S + + +E
Sbjct: 155 RQVDQLIASIHQRSLADPYHLPPIICGDFNTSSRSSSDALHQLIERSAGEEDYHYFPKRE 214
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + R + ++ + + +S S H P+
Sbjct: 215 RTFPAHFPSRGLDFI-----------------LLAAPFEAENTEVIKSFASDHLPVLSTI 257
Query: 119 DFEK 122
+
Sbjct: 258 SAPE 261
>gi|78067868|ref|YP_370637.1| endonuclease/exonuclease/phosphatase [Burkholderia sp. 383]
gi|77968613|gb|ABB09993.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. 383]
Length = 271
Score = 37.1 bits (84), Expect = 0.77, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 29/118 (24%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W + P ++AGDFN N + ++ + + +
Sbjct: 170 RQMHWIAHWIV-RNAGDGPLMLAGDFNDWRNDSV---ALFGEIGLSEVATLLGESGRTFP 225
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + LS H P +
Sbjct: 226 AFSPALALDKMFVRGLTPLEWRAPSGE--------------AAWLSDHLPYIARLRLD 269
>gi|320104208|ref|YP_004179799.1| endonuclease/exonuclease/phosphatase [Isosphaera pallida ATCC
43644]
gi|319751490|gb|ADV63250.1| Endonuclease/exonuclease/phosphatase [Isosphaera pallida ATCC
43644]
Length = 271
Score = 37.1 bits (84), Expect = 0.77, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 25/115 (21%), Gaps = 7/115 (6%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L + L A + ++ GDFN + +
Sbjct: 158 LDLAVDRLTAAAVASGDPRVLLLMGGDFNAPTEDNTLRRHLGEGFIDLVTAADP---SLA 214
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
R + +L F+ ++ S H P+
Sbjct: 215 AVGTRHDFLG----QGGPRIDHLWLRGGEFTPIAAGIDTRPMLERMPSDHHPVWA 265
>gi|224101943|ref|XP_002312484.1| predicted protein [Populus trichocarpa]
gi|222852304|gb|EEE89851.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 37.1 bits (84), Expect = 0.77, Method: Composition-based stats.
Identities = 12/127 (9%), Positives = 26/127 (20%), Gaps = 23/127 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ I ++ GD N +++ W + + L +
Sbjct: 253 LPRNILDHDRVILLGDLNYRVSLPEATTRLLVDRKEWNALLDNDQLRMGLVNGQVFEGWH 312
Query: 67 K-----------------RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + + + Q S LS
Sbjct: 313 EGLIKFAPTYKYCLKSNVYFGCAEGQRGGKWRAPAWCDRIIWHGEGLKQHFYTRGESNLS 372
Query: 110 THCPLTI 116
H P+
Sbjct: 373 DHRPVKA 379
>gi|109900436|ref|YP_663691.1| hypothetical protein Patl_4138 [Pseudoalteromonas atlantica T6c]
gi|109702717|gb|ABG42637.1| conserved hypothetical protein [Pseudoalteromonas atlantica T6c]
Length = 325
Score = 37.1 bits (84), Expect = 0.77, Method: Composition-based stats.
Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 16/112 (14%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
K+ A+ + +P +++GD N Q + + + N
Sbjct: 230 KEIANTDSENALPVIVSGDLNDVA-----WSPTTQAFLRVSGMCDPRIGRGAF------N 278
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + F +V +L S H PL E +
Sbjct: 279 TFHAQHVLARWPLDHVFHSEDFELV-----NLSRLPEIGSDHFPLLTELCLK 325
>gi|307311330|ref|ZP_07590973.1| Endonuclease/exonuclease/phosphatase [Sinorhizobium meliloti
BL225C]
gi|307318863|ref|ZP_07598295.1| Endonuclease/exonuclease/phosphatase [Sinorhizobium meliloti AK83]
gi|306895584|gb|EFN26338.1| Endonuclease/exonuclease/phosphatase [Sinorhizobium meliloti AK83]
gi|306899631|gb|EFN30259.1| Endonuclease/exonuclease/phosphatase [Sinorhizobium meliloti
BL225C]
Length = 368
Score = 37.1 bits (84), Expect = 0.78, Method: Composition-based stats.
Identities = 11/81 (13%), Positives = 18/81 (22%), Gaps = 7/81 (8%)
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY----DQSDL 101
+D L E C + S + + +
Sbjct: 287 LDRWTLFHSRGPEDRHLCQLDYIWLSPELARRNAARLPEIIRAGQPYRTIFPAGQEVERY 346
Query: 102 DTRRS---KLSTHCPLTIEYD 119
K S HCP+ + D
Sbjct: 347 PRTGWDRPKASDHCPVVMTLD 367
>gi|86130797|ref|ZP_01049396.1| endonuclease/exonuclease/phosphatase family protein [Dokdonia
donghaensis MED134]
gi|85818208|gb|EAQ39368.1| endonuclease/exonuclease/phosphatase family protein [Dokdonia
donghaensis MED134]
Length = 328
Score = 37.1 bits (84), Expect = 0.78, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 34/131 (25%), Gaps = 19/131 (14%)
Query: 4 QQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ + ++ D + +I GDFN +S + + +L + + S
Sbjct: 189 KAAQKNRELIDNLVAQNPEARVIIMGDFNDGPHSESIKKHLVKTDFYNPMLYLGTRYEGS 248
Query: 62 ----TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
I + FV DN + Y +
Sbjct: 249 LNYNYEWFIFDQIIFSNNFVRIYDNDLLYEKSDIYNDFYLTEYDGKFKGNPFRTYAGKNY 308
Query: 109 ----STHCPLT 115
S H P+
Sbjct: 309 LGGYSDHFPVF 319
>gi|289766976|ref|ZP_06526354.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|289697175|gb|EFD64604.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 294
Score = 37.1 bits (84), Expect = 0.78, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 26/107 (24%), Gaps = 18/107 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+++ ++ GDFN + D W TC +S
Sbjct: 204 LAKEVARHERAIVVGDFNAVPEASEL-DPMWSLATDTDPQC--HPAPGGTCEPTTDWQSK 260
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
DY + R+ S H L + D
Sbjct: 261 FDYVFLRGVAPREH---------------RVVRTAHSDHDLLYADLD 292
>gi|196000877|ref|XP_002110306.1| hypothetical protein TRIADDRAFT_21945 [Trichoplax adhaerens]
gi|190586257|gb|EDV26310.1| hypothetical protein TRIADDRAFT_21945 [Trichoplax adhaerens]
Length = 473
Score = 37.1 bits (84), Expect = 0.78, Method: Composition-based stats.
Identities = 14/138 (10%), Positives = 31/138 (22%), Gaps = 22/138 (15%)
Query: 5 QGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQ------------KMDPDG 50
Q + + K + +P ++ GDFN +S +
Sbjct: 331 QIQAITNHLSLISKSISDLPVILCGDFNSAPSSDTYQFLTNGYCKSQSTADESYLLKDAA 390
Query: 51 LLIRFPQEKEST-------CNVIKRNKSSLDYFVIDRDNKNFLID-NSFSIVSYDQSDLD 102
+ ++DY R N + + + +
Sbjct: 391 SFEFSHNLTFDALSQTLHCTHHTTNFSGTIDYIFGKRGYFNVKNAIPLLEVTNINANHGL 450
Query: 103 TRRSKLSTHCPLTIEYDF 120
S H + +
Sbjct: 451 PTTEFPSDHLAVICDISM 468
>gi|72390874|ref|XP_845731.1| RNA-editing complex protein MP100 [Trypanosoma brucei TREU927]
gi|62175829|gb|AAX69956.1| RNA-editing complex protein MP100 [Trypanosoma brucei]
gi|70802267|gb|AAZ12172.1| RNA-editing complex protein MP100 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 894
Score = 37.1 bits (84), Expect = 0.78, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 31/128 (24%), Gaps = 13/128 (10%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L+ + + G V GDFN + ++ ++
Sbjct: 767 QDTALRHHMTKTLGGGD-VVTMGDFNDWPT-NEFIMPHESQYVDCWPVLHPNNPGKTMDE 824
Query: 65 VIKR--------NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS---KLSTHCP 113
D + + + S + + + S H
Sbjct: 825 TNTFCKLKVEEMFFGRSDKVFLRSRRLVPVEAHLVGTRSVNDENNNADAPAYLFPSDHYG 884
Query: 114 LTIEYDFE 121
++I + +
Sbjct: 885 VSITFSLK 892
>gi|29293902|gb|AAO63565.1| RNA editing complex protein MP100 [Trypanosoma brucei]
Length = 902
Score = 37.1 bits (84), Expect = 0.78, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 31/128 (24%), Gaps = 13/128 (10%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L+ + + G V GDFN + ++ ++
Sbjct: 767 QDTALRHHMTKTLGGGD-VVTMGDFNDWPT-NEFIMPHESQYVDCWPVLHPNNPGKTMDE 824
Query: 65 VIKR--------NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS---KLSTHCP 113
D + + + S + + + S H
Sbjct: 825 TNTFCKLKVEEMFFGRSDKVFLRSRRLVPVEAHLVGTRSVNDENNNADAPAYLFPSDHYG 884
Query: 114 LTIEYDFE 121
++I + +
Sbjct: 885 VSITFSLK 892
>gi|325179666|emb|CCA14064.1| carbon catabolite repressor protein putative [Albugo laibachii
Nc14]
Length = 607
Score = 37.1 bits (84), Expect = 0.79, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 31/129 (24%), Gaps = 26/129 (20%)
Query: 19 TGIPFVIAGDFNRKINSIGDT--------------DDFWQKMDPDGLLIRF--------- 55
+P V+ GDFN + +S + +
Sbjct: 469 RDLPVVLCGDFNSEPSSAVYQFLSRNHVASDHEDLQPLASVFNSIEIAHCLALASSYASV 528
Query: 56 ---PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E + + Y + L +S + S H
Sbjct: 529 FRSEPEYTNYTGHWTGVVDYVWYTPSNLALFAALKMHSPETLEAYAKTPLPNCQHTSDHV 588
Query: 113 PLTIEYDFE 121
PL +++ F+
Sbjct: 589 PLCLDFSFK 597
>gi|325094515|gb|EGC47825.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 636
Score = 37.1 bits (84), Expect = 0.79, Method: Composition-based stats.
Identities = 17/149 (11%), Positives = 31/149 (20%), Gaps = 43/149 (28%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIG------------------------------- 37
L G ++ GD N + I
Sbjct: 182 LDARVRNLAAMGKRVIVTGDLNISGSQIDSARALEGIRKGTLTDSEFVSSPVRRIFNQLV 241
Query: 38 -------DTDDFWQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
D DD + L ++ ++ +R + + D
Sbjct: 242 DGGKVIGDRDDGRETPVLVDLCRKYHPDRLGMYTCWEQRVNARPGNYGARIDYVLCDRSM 301
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S HCP+ E
Sbjct: 302 QDWFSASNI----QEGLMGSDHCPVYAEL 326
>gi|302889004|ref|XP_003043388.1| hypothetical protein NECHADRAFT_53421 [Nectria haematococca mpVI
77-13-4]
gi|256724304|gb|EEU37675.1| hypothetical protein NECHADRAFT_53421 [Nectria haematococca mpVI
77-13-4]
Length = 341
Score = 37.1 bits (84), Expect = 0.79, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 8/116 (6%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+K G P ++AGDFN T + ++ N K N
Sbjct: 160 KKHNKGRPVILAGDFNDVWTHPKRTINRLTDAGFTDAWVKLHHNGTIPENNGKSNGCDHP 219
Query: 75 YFVI--------DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ F+ ++ + S LS H P+ +++ + +
Sbjct: 220 PQNNSCEVVDKVFYRSGTFVTLDAVKFDYKSDIFVAGNNSPLSDHEPVLVDFVWSR 275
>gi|240275156|gb|EER38671.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
Length = 636
Score = 37.1 bits (84), Expect = 0.79, Method: Composition-based stats.
Identities = 17/149 (11%), Positives = 31/149 (20%), Gaps = 43/149 (28%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIG------------------------------- 37
L G ++ GD N + I
Sbjct: 182 LDARVRNLAAMGKRVIVTGDLNISGSQIDSARALEGVRKGTLTDSEFVSSPVRRIFNQLV 241
Query: 38 -------DTDDFWQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
D DD + L ++ ++ +R + + D
Sbjct: 242 DGGKVIGDRDDGRETPVLVDLCRKYHPDRLGMYTCWEQRVNARPGNYGARIDYVLCDRSM 301
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S HCP+ E
Sbjct: 302 QDWFSASNI----QEGLMGSDHCPVYAEL 326
>gi|124806639|ref|XP_001350780.1| sphingomyelin phosphodiesterase, putative [Plasmodium falciparum
3D7]
gi|18157556|gb|AAL62029.1|AF323591_1 sphingomyelin/lysocholinephospholipid-phospholipase C [Plasmodium
falciparum]
gi|23496908|gb|AAN36460.1| sphingomyelin phosphodiesterase, putative [Plasmodium falciparum
3D7]
gi|26986098|emb|CAC81929.1| putative sphingomyelinase [Plasmodium falciparum]
Length = 393
Score = 37.1 bits (84), Expect = 0.79, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 35/144 (24%), Gaps = 29/144 (20%)
Query: 4 QQGEWLKKWA-----DQKIKTGIPFVIAGDFNRKINSIGDT-DDFWQKMDPDGLLIRFPQ 57
+Q + L KW IK GDFN + N+ D + + +
Sbjct: 246 KQIDELSKWVYEGIPSTFIKKFESLFFVGDFNIRYNADRLFLDKVLSDNYLNSYVTKKSL 305
Query: 58 EKESTCNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYD------------------ 97
+ + R + L+ N+ ++
Sbjct: 306 DTTYDSFLNDYCRYIERDYNYKHKYTLDYILVANNSNVEIIVPQTSIQNYYKSLYFIKFF 365
Query: 98 ---QSDLDTRRSKLSTHCPLTIEY 118
T S H P+ +
Sbjct: 366 LGIIPYKTTYIHHPSDHFPIYATF 389
>gi|325270240|ref|ZP_08136847.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
multiformis DSM 16608]
gi|324987541|gb|EGC19517.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
multiformis DSM 16608]
Length = 347
Score = 37.1 bits (84), Expect = 0.80, Method: Composition-based stats.
Identities = 14/146 (9%), Positives = 39/146 (26%), Gaps = 32/146 (21%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--QKMDPDGLLIRFPQ---- 57
+Q + LK + + ++ GD N D ++ G +
Sbjct: 199 RQVKALKDSLF-RDDKDVKVIVMGDMNDDPTDKSIHDCLSAKAEISEVGPGDMYNPWYNV 257
Query: 58 --EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
++ + + + D ++ + + F + + ++ + R
Sbjct: 258 LVKEGTGTLQYQGKWNLFDQIIMTPNLLDKEGKKDFRELKFWKNQIFRRDYLFQETGKYK 317
Query: 109 ----------------STHCPLTIEY 118
S H P+ +
Sbjct: 318 GNTKRTTAGGVWLDGYSDHLPVVTYF 343
>gi|254710717|ref|ZP_05172528.1| Endonuclease/exonuclease/phosphatase [Brucella pinnipedialis B2/94]
gi|256029100|ref|ZP_05442714.1| Endonuclease/exonuclease/phosphatase [Brucella pinnipedialis
M292/94/1]
gi|260567698|ref|ZP_05838167.1| endonuclease/exonuclease/phosphatase family protein [Brucella suis
bv. 4 str. 40]
gi|261318286|ref|ZP_05957483.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis B2/94]
gi|265986084|ref|ZP_06098641.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis
M292/94/1]
gi|260154363|gb|EEW89444.1| endonuclease/exonuclease/phosphatase family protein [Brucella suis
bv. 4 str. 40]
gi|261297509|gb|EEY01006.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis B2/94]
gi|264658281|gb|EEZ28542.1| endonuclease/exonuclease/phosphatase [Brucella pinnipedialis
M292/94/1]
Length = 285
Score = 37.1 bits (84), Expect = 0.80, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + + +P ++ GD N + + +
Sbjct: 167 EQQAETILSALQE--ADTLPTLLIGDLN-------EWRIGKRSSLSALMPTFNHVATTVP 217
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L I S + + R S H P+ D +
Sbjct: 218 SFPSR---------FPVLALDRVLGAPDNLITSVEVHNTPLARL-ASDHLPIKAHLDLKT 267
Query: 123 G 123
Sbjct: 268 A 268
>gi|228906427|ref|ZP_04070310.1| Sphingomyelinase C [Bacillus thuringiensis IBL 200]
gi|228853243|gb|EEM98017.1| Sphingomyelinase C [Bacillus thuringiensis IBL 200]
Length = 333
Score = 37.1 bits (84), Expect = 0.80, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 33/136 (24%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I +I GD N N+ + ++ ++
Sbjct: 198 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + S ++ + S+ Q
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTY 317
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDYSDHYPVEATISMK 333
>gi|269125513|ref|YP_003298883.1| endonuclease/exonuclease/phosphatase [Thermomonospora curvata DSM
43183]
gi|268310471|gb|ACY96845.1| Endonuclease/exonuclease/phosphatase [Thermomonospora curvata DSM
43183]
Length = 305
Score = 37.1 bits (84), Expect = 0.80, Method: Composition-based stats.
Identities = 15/124 (12%), Positives = 33/124 (26%), Gaps = 22/124 (17%)
Query: 5 QGEWLKKWADQKIK------TGIPF-VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ 57
G + W G P ++AGD+N ++ ++++ G +
Sbjct: 197 SGRAVGNWMRDLRALPAAGRRGQPVRILAGDYNATLDH-----AHFRRVLSRGYADAADR 251
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + L+D ++ DL S H + +
Sbjct: 252 AGMGLTPTWSSPGGRIR-----LTIDHVLVDRRCAVHRVRVHDLP-----GSDHRAVFAD 301
Query: 118 YDFE 121
Sbjct: 302 VRLP 305
>gi|259907945|ref|YP_002648301.1| Endonuclease/exonuclease/phosphatase [Erwinia pyrifoliae Ep1/96]
gi|224963567|emb|CAX55057.1| Endonuclease/exonuclease/phosphatase [Erwinia pyrifoliae Ep1/96]
gi|283477825|emb|CAY73741.1| hypothetical protein EPYR_01361 [Erwinia pyrifoliae DSM 12163]
Length = 372
Score = 37.1 bits (84), Expect = 0.80, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 26/105 (24%), Gaps = 16/105 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
P ++ GD N Q L+ + + C
Sbjct: 228 KSVASAAQPVIVTGDLNDVA-----WSRTTQLFLKISGLLDPRRGRGMFCTFHAGYPFLR 282
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+++ + + + ++ S H P+ I+
Sbjct: 283 WPLDHVFHSQH-----------FVLAGIRRLQNMGSDHFPILIDL 316
>gi|147767793|emb|CAN78326.1| hypothetical protein VITISV_011918 [Vitis vinifera]
Length = 764
Score = 37.1 bits (84), Expect = 0.80, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 30/123 (24%), Gaps = 22/123 (17%)
Query: 19 TGIPFVIAGDFNRKINSI--GDTDDF----WQKMDPDGLLIR---------FPQEKESTC 63
+ GD N ++ S + WQ + L +E
Sbjct: 440 EHDKIIWLGDLNYRLASGCGDVYELLKRNNWQALLEKDQLKIEQRAGRVFKGWEEGRIYF 499
Query: 64 NVIKRNKSSLDY-------FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ ++ D+ R + + Q S+ S H P+
Sbjct: 500 APTYKYLANSDHYVVHTSKSKEKRRTPAWCDRILWKGEGLKQMWYLRGESRFSDHRPVYA 559
Query: 117 EYD 119
+
Sbjct: 560 MFS 562
>gi|121586288|ref|ZP_01676078.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|121549554|gb|EAX59580.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
Length = 281
Score = 37.1 bits (84), Expect = 0.80, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 20/114 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L D+ P ++AGDFN + + L QE V
Sbjct: 186 QQLIALLDELRDFTGPVIVAGDFNS-------WSEARMALLSTQLASVGLQE------VR 232
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + F SD S H PL + +
Sbjct: 233 FSPDNRTTFINGLPLDHVFYRGLQLEKAEAPISD-------ASDHNPLLVRFRL 279
>gi|307131722|ref|YP_003883738.1| putative deoxyribonuclease [Dickeya dadantii 3937]
gi|306529251|gb|ADM99181.1| putative deoxyribonuclease [Dickeya dadantii 3937]
Length = 292
Score = 37.1 bits (84), Expect = 0.80, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 3/106 (2%)
Query: 19 TGIPFVIAGDFN-RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
G P +I GD+N +S G + DP G P + +
Sbjct: 187 NGFPVIIGGDWNLSVTSSNGSYTTGFSWADPTGNPATVPAACPANAATSLTPAGAPSSPY 246
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPLTIEYDFE 121
+ + + Y + + +S H + E DF+
Sbjct: 247 DHIIITGISLTGANTCSIYPTTSAARTTWRKTVSDHMAVYWEVDFK 292
>gi|227821604|ref|YP_002825574.1| putative endonuclease/exonuclease/phosphatase family protein
[Sinorhizobium fredii NGR234]
gi|227340603|gb|ACP24821.1| putative endonuclease/exonuclease/phosphatase family protein
[Sinorhizobium fredii NGR234]
Length = 285
Score = 37.1 bits (84), Expect = 0.80, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 29/121 (23%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q E + + A G P ++ GD N + F +
Sbjct: 166 ARQAETILRVAAD--GAGRPTLLIGDLNEWRMGRRSSLSFLSPIFDPTHATVASFPS--- 220
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
L + + S D R S H P+ D +
Sbjct: 221 -------------RFPLLPLDRVLGNPHHLVTSVSVHDTPLARV-ASDHLPVKASIDLKA 266
Query: 123 G 123
Sbjct: 267 A 267
>gi|190891534|ref|YP_001978076.1| hypothetical protein RHECIAT_CH0001932 [Rhizobium etli CIAT 652]
gi|190696813|gb|ACE90898.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
Length = 253
Score = 37.1 bits (84), Expect = 0.80, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 7/77 (9%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L ++ V+ GDFN +S + + GL
Sbjct: 167 EEQALALAGLVERVWPGNEGLVVCGDFNVLPDSS-----TFNILARLGLSDLVTGNGLVD 221
Query: 63 CNVIKR--NKSSLDYFV 77
DY +
Sbjct: 222 TRTSYYLKQGRFADYML 238
>gi|167581698|ref|ZP_02374572.1| endonuclease/exonuclease/phosphatase family superfamily protein
[Burkholderia thailandensis TXDOH]
Length = 135
Score = 37.1 bits (84), Expect = 0.80, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 26/105 (24%), Gaps = 7/105 (6%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ ++
Sbjct: 33 ARAADAIVCGDFNSAYRSEAYRRFLAPFPDAPRFVDAWLARHPGKTPPVTAGVYDTAQWS 92
Query: 76 FVIDR-DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
D ++ I + ++ S H P+ +E
Sbjct: 93 EGPMTCDFAFVTDTLAYRISRCEID----GATRASDHQPIVLELS 133
>gi|146282503|ref|YP_001172656.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
stutzeri A1501]
gi|145570708|gb|ABP79814.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
stutzeri A1501]
gi|327480758|gb|AEA84068.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
stutzeri DSM 4166]
Length = 267
Score = 37.1 bits (84), Expect = 0.80, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 34/118 (28%), Gaps = 15/118 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+QQ E L D + G P V+AGDFN T D + + K
Sbjct: 165 AQQLELLCNLLDS-LPQGAPVVVAGDFNDWRLRATHTLDRCAGLHEVFAVAHGQVAKTFP 223
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N+ S + + LS H PL +E
Sbjct: 224 ARW------------PMLRLDRIYVRNATSHKPRILGNKPW--THLSDHLPLAVEIHL 267
>gi|260891468|ref|ZP_05902731.1| endonuclease/exonuclease/phosphatase family protein [Leptotrichia
hofstadii F0254]
gi|260858851|gb|EEX73351.1| endonuclease/exonuclease/phosphatase family protein [Leptotrichia
hofstadii F0254]
Length = 246
Score = 37.1 bits (84), Expect = 0.81, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 26/111 (23%), Gaps = 14/111 (12%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ ++GDFN + + D S +
Sbjct: 150 DLLTKFFDKDDIKFLSGDFNFLPTTKYYGEITKDWRDTYMESNASGVRTLSDPRIDYIFG 209
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
S + SY +D +KLS H P D +
Sbjct: 210 SQSKKWK--------------VKSSYFINDATQDWTKLSDHLPYITVLDIK 246
>gi|85058565|ref|YP_454267.1| hypothetical protein SG0587 [Sodalis glossinidius str. 'morsitans']
gi|84779085|dbj|BAE73862.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 395
Score = 37.1 bits (84), Expect = 0.81, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q P ++AGDFN Q+M E +R ++
Sbjct: 176 EQIRNHSGPVIMAGDFNA---------WSRQRMLALYRFAEQMGLGEVRFVDDQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + S H PL +E++
Sbjct: 227 RPLDFVFYRDMNVCEASVLVTEA------------SDHNPLLVEFE 260
>gi|309782328|ref|ZP_07677055.1| endonuclease/exonuclease/phosphatase [Ralstonia sp. 5_7_47FAA]
gi|308918946|gb|EFP64616.1| endonuclease/exonuclease/phosphatase [Ralstonia sp. 5_7_47FAA]
Length = 287
Score = 37.1 bits (84), Expect = 0.82, Method: Composition-based stats.
Identities = 13/106 (12%), Positives = 30/106 (28%), Gaps = 7/106 (6%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDT---DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ +I GDFN K +S+ F ++ +++
Sbjct: 184 LAQTKATIICGDFNCKADSMPKRLATAPFAREPALHDAWEIAHGATPQPPTFGVYDRADW 243
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
D ++ + + ++ S H P+ +E
Sbjct: 244 TEPAYACDFMLISEPLKPRVLRLEINS----ATQASDHQPMLLELQ 285
>gi|297810591|ref|XP_002873179.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319016|gb|EFH49438.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 469
Score = 37.1 bits (84), Expect = 0.82, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 28/126 (22%), Gaps = 23/126 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKIN----------SIGDTDDFW-----QKMDPDGLLIRFP 56
+I + GD N +I D + G + +
Sbjct: 324 RVPDRITKHDRVIWLGDLNYRIALSYSETKTLLDKNAWDTLLNKDQLKIERDAGRVFKGW 383
Query: 57 QEKESTCNVIKRNKSSLD--------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
E + + + D R + + Q S+
Sbjct: 384 HEGKIFFAPTYKYSYNSDAYAGDTTKEKKNKRRTPAWCDRILWHGDGIRQLSYVRGESRF 443
Query: 109 STHCPL 114
S H P+
Sbjct: 444 SDHRPV 449
>gi|242096158|ref|XP_002438569.1| hypothetical protein SORBIDRAFT_10g022040 [Sorghum bicolor]
gi|241916792|gb|EER89936.1| hypothetical protein SORBIDRAFT_10g022040 [Sorghum bicolor]
Length = 1088
Score = 37.1 bits (84), Expect = 0.82, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 30/122 (24%), Gaps = 16/122 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKIN--SIGDTDDFWQKMDPDGL-------LIRFPQ 57
++ + +P + GD N +N Q++ +
Sbjct: 123 RQIRHFV--MSNQDLPVICMGDMNNIMNVTEKLGPRPANQRLISNFCCLVKDCGFFDLGY 180
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ KR S Y F + + + S S H P+
Sbjct: 181 HGPAYTWSNKRFSSFPTY----ERLDRFFGNAEWCANFPNTSVFHLPMLY-SDHAPILAV 235
Query: 118 YD 119
+
Sbjct: 236 LN 237
>gi|145334295|ref|NP_001078529.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
thaliana]
gi|332003429|gb|AED90812.1| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
Length = 466
Score = 37.1 bits (84), Expect = 0.82, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 28/126 (22%), Gaps = 23/126 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKIN----------SIGDTDDFW-----QKMDPDGLLIRFP 56
+I + GD N +I D + G + +
Sbjct: 321 RVPDRITKHDRVIWLGDLNYRIALSYSETKTLLDKNAWDTLLNKDQLKIERDAGRVFKGW 380
Query: 57 QEKESTCNVIKRNKSSLD--------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
E + + + D R + + Q S+
Sbjct: 381 HEGKIFFAPTYKYSYNSDAYAGDTSKEKKNKRRTPAWCDRILWHGDGIRQLSYVRGESRF 440
Query: 109 STHCPL 114
S H P+
Sbjct: 441 SDHRPV 446
>gi|30680735|ref|NP_196117.2| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
thaliana]
gi|332003428|gb|AED90811.1| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
Length = 437
Score = 37.1 bits (84), Expect = 0.82, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 28/126 (22%), Gaps = 23/126 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKIN----------SIGDTDDFW-----QKMDPDGLLIRFP 56
+I + GD N +I D + G + +
Sbjct: 292 RVPDRITKHDRVIWLGDLNYRIALSYSETKTLLDKNAWDTLLNKDQLKIERDAGRVFKGW 351
Query: 57 QEKESTCNVIKRNKSSLD--------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
E + + + D R + + Q S+
Sbjct: 352 HEGKIFFAPTYKYSYNSDAYAGDTSKEKKNKRRTPAWCDRILWHGDGIRQLSYVRGESRF 411
Query: 109 STHCPL 114
S H P+
Sbjct: 412 SDHRPV 417
>gi|15965796|ref|NP_386149.1| hypothetical protein SMc04274 [Sinorhizobium meliloti 1021]
gi|15075065|emb|CAC46622.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
Length = 368
Score = 37.1 bits (84), Expect = 0.82, Method: Composition-based stats.
Identities = 11/81 (13%), Positives = 18/81 (22%), Gaps = 7/81 (8%)
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY----DQSDL 101
+D L E C + S + + +
Sbjct: 287 LDRWTLFHSRGPEDRHLCQLDYIWLSPELARRNAARLPEIIRAGQPYRTIFPAGQEVERY 346
Query: 102 DTRRS---KLSTHCPLTIEYD 119
K S HCP+ + D
Sbjct: 347 PRTGWDRPKASDHCPVVMTLD 367
>gi|10178037|dbj|BAB11520.1| unnamed protein product [Arabidopsis thaliana]
Length = 366
Score = 37.1 bits (84), Expect = 0.82, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 28/126 (22%), Gaps = 23/126 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKIN----------SIGDTDDFW-----QKMDPDGLLIRFP 56
+I + GD N +I D + G + +
Sbjct: 221 RVPDRITKHDRVIWLGDLNYRIALSYSETKTLLDKNAWDTLLNKDQLKIERDAGRVFKGW 280
Query: 57 QEKESTCNVIKRNKSSLD--------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
E + + + D R + + Q S+
Sbjct: 281 HEGKIFFAPTYKYSYNSDAYAGDTSKEKKNKRRTPAWCDRILWHGDGIRQLSYVRGESRF 340
Query: 109 STHCPL 114
S H P+
Sbjct: 341 SDHRPV 346
>gi|315185421|gb|EFU19193.1| Endonuclease/exonuclease/phosphatase [Spirochaeta thermophila DSM
6578]
Length = 311
Score = 37.1 bits (84), Expect = 0.83, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 35/131 (26%), Gaps = 15/131 (11%)
Query: 1 MLSQQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIG--DTDDFWQKMDPDGLLIRFP 56
+ Q + + ++ + G ++ GDFN + + + + + + P
Sbjct: 172 IRRNQLFLIARRLEEIRRTAPGAHVLVGGDFNMEADEVETFFDRALFPQDVHSVWSMMVP 231
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKN-----------FLIDNSFSIVSYDQSDLDTRR 105
S + +D F ++ S
Sbjct: 232 GTMPSGSYWYEGRWERIDGFFFTEGLRDGVGLDVTGGEVMAFPWLLDERGRPWSWDMGTG 291
Query: 106 SKLSTHCPLTI 116
S S H P+ +
Sbjct: 292 SGYSDHLPVKV 302
>gi|238921068|ref|YP_002934583.1| hypothetical protein NT01EI_3199 [Edwardsiella ictaluri 93-146]
gi|238870637|gb|ACR70348.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 270
Score = 37.1 bits (84), Expect = 0.83, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q P ++AGDFN N ++++ + +E +R +
Sbjct: 184 EQIALHKGPVIMAGDFNAWSN---------RRLNALRRFACGMELREVHFTNDQRRTAFG 234
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+++ S + + S H PL +E+
Sbjct: 235 RPLDFVFYRALGVVEASVLVT------------QASDHNPLLVEFR 268
>gi|140068359|gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
H; Endonuclease/exonuclease/phosphatase [Medicago
truncatula]
Length = 1246
Score = 37.1 bits (84), Expect = 0.83, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 29/108 (26%), Gaps = 9/108 (8%)
Query: 22 PFVIAGDFNRKINSIGDTDDF---------WQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
P++ GDFN + + + LL P R S
Sbjct: 131 PWLFIGDFNAVLGAHEKRRRRPPPPLSCIDFMNWSNANLLHHLPTLGAFYTWSNGRLGSD 190
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+DR N N + S S H PL + DF
Sbjct: 191 NVALRLDRAICNEEWVNFWRSSSCSALGNSALVRHQSDHHPLLMSMDF 238
>gi|62701647|gb|AAX92720.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|62701880|gb|AAX92953.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77548739|gb|ABA91536.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 838
Score = 37.1 bits (84), Expect = 0.83, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 15/119 (12%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGD--------TDDFWQKMDPDGLLIRFPQE 58
+L + A+ K P V+ GDFN + + L
Sbjct: 110 RFLTELANIIQKQMKPLVMGGDFNIIRKESDKNKAGGYNRWSFIFNAVIEQANLREIFLG 169
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + + N+ Y + T +S H PL I+
Sbjct: 170 GRKFTWCN-------NQENPTLEKLDRIFVNTDWEKEYPLTMAKTLTRSISDHNPLLID 221
>gi|29347026|ref|NP_810529.1| hypothetical protein BT_1616 [Bacteroides thetaiotaomicron
VPI-5482]
gi|253572661|ref|ZP_04850062.1| endonuclease/exonuclease/phosphatase family [Bacteroides sp. 1_1_6]
gi|29338924|gb|AAO76723.1| endonuclease/exonuclease/phosphatase family [Bacteroides
thetaiotaomicron VPI-5482]
gi|251837793|gb|EES65883.1| endonuclease/exonuclease/phosphatase family [Bacteroides sp. 1_1_6]
Length = 373
Score = 37.1 bits (84), Expect = 0.83, Method: Composition-based stats.
Identities = 21/153 (13%), Positives = 40/153 (26%), Gaps = 38/153 (24%)
Query: 4 QQGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L+ AD + + VI GDFN + + + + FP ++
Sbjct: 220 HAARILRTEADSLLNIRLHPQLVIMGDFNDYPTNKSIKEIL--EATAPKHSVTFPNPRKL 277
Query: 62 TC----NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ------------------- 98
R+ S Y + ++ + S
Sbjct: 278 YHLLARKATSRHFGSYKYHGEWGLLDHLIVSGNLLDASSKFFTGEDKANVARLPFLLTED 337
Query: 99 ----SDLDTRRSK-------LSTHCPLTIEYDF 120
D R K +S H P+ +++
Sbjct: 338 KKYGDDEPFRTYKGMKYQGGISDHLPIYADFEL 370
>gi|85714027|ref|ZP_01045016.1| Endonuclease/exonuclease/phosphatase [Nitrobacter sp. Nb-311A]
gi|85699153|gb|EAQ37021.1| Endonuclease/exonuclease/phosphatase [Nitrobacter sp. Nb-311A]
Length = 226
Score = 37.1 bits (84), Expect = 0.83, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 25/118 (21%), Gaps = 26/118 (22%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + D V+ GDFN Q+ + F
Sbjct: 135 EQARAIVNLIDA-----PRTVVLGDFNDWFWVKSVRRILAQRCPVRTRMRTF------PS 183
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ +IV R S H P+ + F
Sbjct: 184 WC------------PVLRLDRIYTVQTGNIVRAWTDPEARGR---SDHLPVIADVMFS 226
>gi|170699632|ref|ZP_02890670.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
IOP40-10]
gi|170135448|gb|EDT03738.1| Endonuclease/exonuclease/phosphatase [Burkholderia ambifaria
IOP40-10]
Length = 271
Score = 37.1 bits (84), Expect = 0.83, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 29/118 (24%), Gaps = 18/118 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q W+ W + P V+AGDFN N + ++ + Q +
Sbjct: 170 RQMHWIAHWIV-RNAGDGPLVLAGDFNDWRNDSV---ALFGEIGMSEVATLLGQSGRTFP 225
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + LS H P +
Sbjct: 226 AFSPALALDKMFVRGLTPLEWQAPSGE--------------TAWLSDHLPYIARLRLD 269
>gi|169795897|ref|YP_001713690.1| hypothetical protein ABAYE1809 [Acinetobacter baumannii AYE]
gi|213157406|ref|YP_002319451.1| endonuclease/exonuclease/phosphatase [Acinetobacter baumannii
AB0057]
gi|215483385|ref|YP_002325598.1| Endonuclease/Exonuclease/phosphatase family protein [Acinetobacter
baumannii AB307-0294]
gi|332854431|ref|ZP_08435363.1| endonuclease/exonuclease/phosphatase family protein [Acinetobacter
baumannii 6013150]
gi|332868461|ref|ZP_08438174.1| endonuclease/exonuclease/phosphatase family protein [Acinetobacter
baumannii 6013113]
gi|169148824|emb|CAM86693.1| hypothetical protein; putative Endonuclease/Exonuclease/phosphatase
domain [Acinetobacter baumannii AYE]
gi|213056566|gb|ACJ41468.1| endonuclease/exonuclease/phosphatase [Acinetobacter baumannii
AB0057]
gi|213988687|gb|ACJ58986.1| Endonuclease/Exonuclease/phosphatase family protein [Acinetobacter
baumannii AB307-0294]
gi|332728007|gb|EGJ59399.1| endonuclease/exonuclease/phosphatase family protein [Acinetobacter
baumannii 6013150]
gi|332733386|gb|EGJ64572.1| endonuclease/exonuclease/phosphatase family protein [Acinetobacter
baumannii 6013113]
Length = 295
Score = 37.1 bits (84), Expect = 0.83, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 39/137 (28%), Gaps = 29/137 (21%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD--------------------TDDFWQK 45
E L+ + ++ ++ GD+N + + W+
Sbjct: 157 AERLRVNIEDELNETKNIILVGDYNVEPYDPAVVHQLQSSREKTIVSKKPNVFYNPCWKF 216
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD----- 100
+ P L + + + + + + + + +
Sbjct: 217 LVPSFQLKSLNTH---GTYYYANGQFHHWHVIDQIMFSSNFLSDEWDLQDKYINIVNLTN 273
Query: 101 -LDTRRSKLSTHCPLTI 116
+T++S LS H PL+
Sbjct: 274 LDNTQKSLLSDHHPLSA 290
>gi|56478194|ref|YP_159783.1| putative endonuclease / exonuclease / phosphatase [Aromatoleum
aromaticum EbN1]
gi|56314237|emb|CAI08882.1| conserved hypothetical protein, putative endonuclease / exonuclease
/ phosphatase [Aromatoleum aromaticum EbN1]
Length = 284
Score = 37.1 bits (84), Expect = 0.83, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 3/97 (3%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK-SSLDYFVIDRDN 82
V GDFN + S T + K + ++
Sbjct: 188 VACGDFNCEPGSGAYTLMSADIALHVPPWRDAWRVKHRSRAHDPTVGLHGAEWPGRTYCC 247
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + S H PL +E +
Sbjct: 248 DYAWVSDDLAARVAQVEVYA--ATPASDHQPLVLELN 282
>gi|313159654|gb|EFR59012.1| endonuclease/exonuclease/phosphatase family protein [Alistipes sp.
HGB5]
Length = 250
Score = 37.1 bits (84), Expect = 0.84, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 29/100 (29%), Gaps = 18/100 (18%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P ++AGDFN DD + + G R + R +DY
Sbjct: 169 KPVLLAGDFNM--------DDAEEVLGGLGGEFRPLSDTAQLTFPSDRPSIRIDY----- 215
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ S I S HCPL + +
Sbjct: 216 -ILGRGLPQSAKIAERTVDYTTV----ASDHCPLWVSLVW 250
>gi|255035312|ref|YP_003085933.1| Endonuclease/exonuclease/phosphatase [Dyadobacter fermentans DSM
18053]
gi|254948068|gb|ACT92768.1| Endonuclease/exonuclease/phosphatase [Dyadobacter fermentans DSM
18053]
Length = 354
Score = 37.1 bits (84), Expect = 0.84, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 29/110 (26%), Gaps = 16/110 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A + + +P ++ GD N + + N
Sbjct: 232 AKEVKASRLPCIVVGDLNDV-------AWSYTTDLFTKISGLLDPRIGRGFY----NTFH 280
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
++ + F +V L + S H P+ + +E+
Sbjct: 281 AGMPLLRFPLDHVFCSTDFKLVE-----LARLENFSSDHFPILLSLQYEQ 325
>gi|312130303|ref|YP_003997643.1| endonuclease/exonuclease/phosphatase [Leadbetterella byssophila DSM
17132]
gi|311906849|gb|ADQ17290.1| Endonuclease/exonuclease/phosphatase [Leadbetterella byssophila DSM
17132]
Length = 363
Score = 37.1 bits (84), Expect = 0.85, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 19/114 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ L+ W + K+ P +IAGD N ++ F +E
Sbjct: 266 EVNILESWIN---KSPYPVIIAGDLNELPYGYAYGKLRRLLLNA------FEEEGRGFGF 316
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ L + + F I ++ Y K S H PL EY
Sbjct: 317 TYRKILRFLRIDNQFFEAEKFKIVRFKTLHEY----------KYSDHYPLLGEY 360
>gi|308186127|ref|YP_003930258.1| hypothetical protein Pvag_0607 [Pantoea vagans C9-1]
gi|308056637|gb|ADO08809.1| Uncharacterized protein ybhP [Pantoea vagans C9-1]
Length = 253
Score = 37.1 bits (84), Expect = 0.85, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 14/104 (13%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ P V+AGDFN + G ++ ++ R +
Sbjct: 164 LPPDAPVVVAGDFND-------WQRRANAILKQGAGLKEVFSMKTG-----RPARTFPAR 211
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N+ + S LS H PL +E
Sbjct: 212 FPLLRLDRIYVRNATVSHPWALPRKPW--SHLSDHAPLAVEIHL 253
>gi|212723858|ref|NP_001131894.1| hypothetical protein LOC100193277 [Zea mays]
gi|195646938|gb|ACG42937.1| type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Zea mays]
gi|238010408|gb|ACR36239.1| unknown [Zea mays]
Length = 578
Score = 37.1 bits (84), Expect = 0.85, Method: Composition-based stats.
Identities = 7/72 (9%), Positives = 14/72 (19%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + R + R + + Q
Sbjct: 460 RVFQGWKEGRIYFPPTYKYSFNSDRYAGEGRHPKEKRRTPAWCDRILWHGNGLSQLCYVR 519
Query: 104 RRSKLSTHCPLT 115
S+ S H P+
Sbjct: 520 GESRFSDHRPVY 531
>gi|170588391|ref|XP_001898957.1| CCR4 [Brugia malayi]
gi|158593170|gb|EDP31765.1| CCR4, putative [Brugia malayi]
Length = 625
Score = 37.1 bits (84), Expect = 0.85, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 38/153 (24%), Gaps = 35/153 (22%)
Query: 1 MLSQQGEWLKKWADQKI---KTGIPFVIAGDFNRKINSIGD------------------- 38
ML Q+ L ++ IP +I GD N S
Sbjct: 443 MLVQEINTLLDEISERYRITPHQIPVLICGDLNSLPESGVVEFLSKGAISREHPDLKEFR 502
Query: 39 TDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID---------- 88
D + + C V + +Y + + +++
Sbjct: 503 QDPCITRFSASDDPTVYTHGLRLDCAVDPNSMPFTNYTLEFKGVIDYIFSTPQSLARLGV 562
Query: 89 ---NSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S V ++ S H P+ ++
Sbjct: 563 LGPLSMEWVLANKIIGFPHAHVPSDHVPIMAQF 595
>gi|161830200|ref|YP_001596787.1| endonuclease/exonuclease/phosphatase family protein [Coxiella
burnetii RSA 331]
gi|161762067|gb|ABX77709.1| endonuclease/exonuclease/phosphatase family protein [Coxiella
burnetii RSA 331]
Length = 255
Score = 37.1 bits (84), Expect = 0.85, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 14/117 (11%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L K + + + P +IAGDFN G + ++++ + + K +
Sbjct: 153 QLITLSKRIEAHVPSHAPLIIAGDFNDWR--RGAFNYMEKELELKEVYKVL-EGKHAKTY 209
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
R +D L+ +Y KLS H PL ++ E
Sbjct: 210 PASRPTLEVDRIYYRG---LKLLSGEIFNENY--------WKKLSDHLPLHAKFAIE 255
>gi|107101580|ref|ZP_01365498.1| hypothetical protein PaerPA_01002624 [Pseudomonas aeruginosa PACS2]
gi|116050099|ref|YP_791087.1| hypothetical protein PA14_36680 [Pseudomonas aeruginosa UCBPP-PA14]
gi|218891892|ref|YP_002440759.1| putative metal-dependent hydrolase [Pseudomonas aeruginosa LESB58]
gi|254235182|ref|ZP_04928505.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|254240584|ref|ZP_04933906.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|296389425|ref|ZP_06878900.1| putative metal-dependent hydrolase [Pseudomonas aeruginosa PAb1]
gi|115585320|gb|ABJ11335.1| putative metal-dependent hydrolase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126167113|gb|EAZ52624.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126193962|gb|EAZ58025.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218772118|emb|CAW27897.1| putative metal-dependent hydrolase [Pseudomonas aeruginosa LESB58]
Length = 245
Score = 37.1 bits (84), Expect = 0.85, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 32/117 (27%), Gaps = 16/117 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + L + + P V+AGDFN D + +
Sbjct: 144 QRQLQLLCELVAG-LPEREPVVVAGDFNDWRQRA---DQLLAGCGLREVFVGAQ------ 193
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R S + N+ S S LS H PL +E +
Sbjct: 194 ----GRPARSFPARWPVLPLDRIYLRNARGRQPRILSRRPW--SHLSDHLPLAVEVE 244
>gi|323357343|ref|YP_004223739.1| exonuclease III [Microbacterium testaceum StLB037]
gi|323273714|dbj|BAJ73859.1| exonuclease III [Microbacterium testaceum StLB037]
Length = 232
Score = 37.1 bits (84), Expect = 0.85, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 24/118 (20%)
Query: 1 MLSQQGE-WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+ Q L + Q + G+P ++ GD+N + QK+ G + +
Sbjct: 126 LRRHQIRTALSEL--QNLGPGLPALMVGDYN----YPVFKEHLGQKVRDQGYELTLSDAR 179
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
R + + V +D + + T LS H P+ I
Sbjct: 180 ---TYTRYRF--------------FRGHYDFATSVGFDIAHIRTLPQGLSDHLPILIT 220
>gi|315633964|ref|ZP_07889253.1| endonuclease/exonuclease/phosphatase [Aggregatibacter segnis ATCC
33393]
gi|315477214|gb|EFU67957.1| endonuclease/exonuclease/phosphatase [Aggregatibacter segnis ATCC
33393]
Length = 263
Score = 37.1 bits (84), Expect = 0.85, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 37/108 (34%), Gaps = 2/108 (1%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
++ ++ ++ GDFN S + + + L E++ + +++
Sbjct: 158 IVERSQSQNLKILMGDFNTDAISDP--NAYQKIKSLGLLDTFEMAEQKDSGITVEKAIDG 215
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++ ++ + ++S + +S H L +E
Sbjct: 216 WKGHSEEKRLDYIFLNQTKRVLSSQVVFNGKNKPVVSDHFGLEVELTL 263
>gi|227551056|ref|ZP_03981105.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium TX1330]
gi|227179814|gb|EEI60786.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium TX1330]
Length = 276
Score = 37.1 bits (84), Expect = 0.85, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 2/102 (1%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+T P GDFN +S G + + ++ ++ V K+
Sbjct: 175 ETRAPLFFLGDFNNPADSEGYHIVKKSGLLLQDSYVIANEKGKAAT-VEKKIDGWEQNT- 232
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + Y + +S H IE D
Sbjct: 233 EKLRIDFIFVPEGVQVKKYQRIFDGIDSPIISDHYGAEIEID 274
>gi|307132184|ref|YP_003884200.1| hypothetical protein Dda3937_03970 [Dickeya dadantii 3937]
gi|306529713|gb|ADM99643.1| conserved protein [Dickeya dadantii 3937]
Length = 263
Score = 37.1 bits (84), Expect = 0.86, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 39/113 (34%), Gaps = 21/113 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L+ +Q + P V+AGDFN S ++ GL +
Sbjct: 170 KQLETIGEQLKRHKGPVVMAGDFNAW--SQPRVSALYRFAHRMGLGEVVFSD-------D 220
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+R ++ + + ++S + + S H PL +E+D
Sbjct: 221 QRRRAFGRPLDFVFYRELGVANSSVLVTNA------------SDHNPLLVEFD 261
>gi|261329150|emb|CBH12129.1| RNA-editing complex protein MP100 [Trypanosoma brucei gambiense
DAL972]
Length = 894
Score = 37.1 bits (84), Expect = 0.86, Method: Composition-based stats.
Identities = 14/127 (11%), Positives = 31/127 (24%), Gaps = 11/127 (8%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSI---GDTDDFWQKMDPDGLLIRFPQEKES 61
Q L+ + + G V GDFN + + E+
Sbjct: 767 QDTALRHHMTKTLGGGD-VVTMGDFNDWPTNEFIMPHESQYVDCWPVLHPNDPGKTMDET 825
Query: 62 TCNVI----KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS---KLSTHCPL 114
+ D + + + S + + + S H +
Sbjct: 826 NTFCKLKVEEMFFGRSDKVFLRSRRLVPVEAHLVGTRSVNDENNNADAPAYLFPSDHYGV 885
Query: 115 TIEYDFE 121
+I + +
Sbjct: 886 SITFSLK 892
>gi|229170375|ref|ZP_04298048.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH621]
gi|228613072|gb|EEK70224.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH621]
Length = 263
Score = 37.1 bits (84), Expect = 0.86, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + + GDFN ++ G + + L ++ ++
Sbjct: 156 DRLMERVNSNELSFLMGDFNNNARLEGEGYEYMMQKGLYDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S ++ S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKQNLRIDLILSNQSKTVNSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|167815447|ref|ZP_02447127.1| endonuclease/exonuclease/phosphatase family superfamily protein
[Burkholderia pseudomallei 91]
Length = 118
Score = 37.1 bits (84), Expect = 0.86, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ ++
Sbjct: 16 ARAADAIVCGDFNSAYRSDAYRRFLAPFPDAPRFVDAWLARHPGKTPPMTAGVYDTAQWS 75
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F+ D +S + D + S H P+ +E
Sbjct: 76 EGPMTCDFAFVTDTLVRRLSRCEID---GTVRASDHQPIVLELS 116
>gi|147820649|emb|CAN72097.1| hypothetical protein VITISV_042083 [Vitis vinifera]
Length = 1832
Score = 37.1 bits (84), Expect = 0.86, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 15/105 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ I GDFN + S + + ++ D L+ P + +
Sbjct: 1015 EDPWCIGGDFNITLFSRERSGQRRISSAMRNFAEIVDDLGLVDLPLQGGDFTW------N 1068
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
FL+ S+ + +S H P+ +
Sbjct: 1069 GGLNNQTWARLDRFLVSPSWIDQFSGIN-QCRLPRPVSDHFPIML 1112
>gi|26246153|ref|NP_752192.1| hypothetical protein c0246 [Escherichia coli CFT073]
gi|91209277|ref|YP_539263.1| hypothetical protein UTI89_C0228 [Escherichia coli UTI89]
gi|110640424|ref|YP_668152.1| hypothetical protein ECP_0215 [Escherichia coli 536]
gi|117622491|ref|YP_851404.1| hypothetical protein APECO1_1781 [Escherichia coli APEC O1]
gi|237707797|ref|ZP_04538278.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|331645378|ref|ZP_08346482.1| putative cytoplasmic protein [Escherichia coli M605]
gi|26106550|gb|AAN78736.1|AE016755_236 Hypothetical protein yafD [Escherichia coli CFT073]
gi|91070851|gb|ABE05732.1| conserved hypothetical protein YafD [Escherichia coli UTI89]
gi|110342016|gb|ABG68253.1| hypothetical protein YafD (endonuclease/exonuclease/phosphatase
family domain) [Escherichia coli 536]
gi|115511615|gb|ABI99689.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|226899007|gb|EEH85266.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|307552056|gb|ADN44831.1| conserved hypothetical protein YafD [Escherichia coli ABU 83972]
gi|312944812|gb|ADR25639.1| hypothetical protein NRG857_01040 [Escherichia coli O83:H1 str. NRG
857C]
gi|323948757|gb|EGB44657.1| endonuclease/Exonuclease/phosphatase [Escherichia coli H252]
gi|331045540|gb|EGI17666.1| putative cytoplasmic protein [Escherichia coli M605]
Length = 274
Score = 37.1 bits (84), Expect = 0.86, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 184 DQIAHHSGPVIMAGDFNA---------WSRRRMNALYRFAREMSLRQVRFTDDQRRRAFG 234
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 235 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 268
>gi|23008040|ref|ZP_00049649.1| COG0708: Exonuclease III [Magnetospirillum magnetotacticum MS-1]
Length = 237
Score = 37.1 bits (84), Expect = 0.86, Method: Composition-based stats.
Identities = 8/112 (7%), Positives = 18/112 (16%), Gaps = 25/112 (22%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW------------------ 43
L Q W + GD+N D +
Sbjct: 133 LRAQA---AGWLAA--DPAAQVALVGDWNVAPLDTDVWDVAYFAGKTHVTPAERDAFAAF 187
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS 95
+ + + + + + + S
Sbjct: 188 GAAGYTEVTREAIPAERTYTYWDYQRLRFPRNEGM--RIDFAYLSPAAHARS 237
>gi|79610414|ref|NP_974691.2| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
thaliana]
gi|332661207|gb|AEE86607.1| endonuclease 2 [Arabidopsis thaliana]
Length = 610
Score = 37.1 bits (84), Expect = 0.87, Method: Composition-based stats.
Identities = 18/157 (11%), Positives = 41/157 (26%), Gaps = 48/157 (30%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIG------------DTDDFWQKMDP-----DGLL 52
++W + ++ G + GD N ++ F + +
Sbjct: 177 RRW-ECLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVF 235
Query: 53 IRFPQEKE-STCNVIK-------RNKSSLDYFVIDRDNKNFLIDNS-------------- 90
E++ + S +D+ ++ + D
Sbjct: 236 RSKHPERKDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHVKECDI 295
Query: 91 -FSIVSYDQSDLDTRR-------SKLSTHCPLTIEYD 119
+ ++ TR K S H P+ I +D
Sbjct: 296 LTEYKRFKNENMPTRWKGGLVTKFKGSDHVPVFISFD 332
>gi|323456026|gb|EGB11893.1| hypothetical protein AURANDRAFT_70680 [Aureococcus anophagefferens]
Length = 789
Score = 37.1 bits (84), Expect = 0.87, Method: Composition-based stats.
Identities = 14/136 (10%), Positives = 32/136 (23%), Gaps = 23/136 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNR---KINSIGDTD-------------DFWQ 44
+ +Q + ++ GD N +S D +
Sbjct: 659 LREKQIGRCLDHVNAHCPALH--LVCGDLNTFRRADHSDAAWDAIVAFYASRGWPRPAER 716
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ D R + + + L+++ + D +
Sbjct: 717 SLALDACEARGYADAGAGAAPDVTC----WTHNPLFRIDHVLLNDGLRR-ACDVENYRRV 771
Query: 105 RSKLSTHCPLTIEYDF 120
S S H P+ +
Sbjct: 772 ESAASDHFPVAFDLTL 787
>gi|304395763|ref|ZP_07377646.1| Endonuclease/exonuclease/phosphatase [Pantoea sp. aB]
gi|304357057|gb|EFM21421.1| Endonuclease/exonuclease/phosphatase [Pantoea sp. aB]
Length = 253
Score = 37.1 bits (84), Expect = 0.88, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 14/104 (13%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ P V+AGDFN + G ++ ++ R +
Sbjct: 164 LPPDAPVVVAGDFND-------WQRRANSILKQGAGLKEVFSMKTG-----RPARTFPAR 211
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N+ + S LS H PL +E
Sbjct: 212 FPILRLDRIYVRNATVSHPWALPRKPW--SHLSDHAPLAVEIHL 253
>gi|167823858|ref|ZP_02455329.1| endonuclease/exonuclease/phosphatase family superfamily protein
[Burkholderia pseudomallei 9]
Length = 125
Score = 37.1 bits (84), Expect = 0.88, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ ++
Sbjct: 23 ARAADAIVCGDFNSAYRSDAYRRFLAPFPDAPRFVDAWLARHPGKTPPMTAGVYDTAQWS 82
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F+ D +S + D + S H P+ +E
Sbjct: 83 EGPMTCDFAFVTDTLVRRLSRCEID---GTVRASDHQPIVLELS 123
>gi|156386353|ref|XP_001633877.1| predicted protein [Nematostella vectensis]
gi|156220953|gb|EDO41814.1| predicted protein [Nematostella vectensis]
Length = 315
Score = 37.1 bits (84), Expect = 0.88, Method: Composition-based stats.
Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 10/121 (8%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + Q E L+K + F++ GDFN N + + ++ + + +
Sbjct: 201 IRAAQMEQLRKTVL-NLPKSAYFIVGGDFNINPNYPPLDGNEKEYLNLNEKMKKMRLVPV 259
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS-KLSTHCPLTIEYD 119
+ ID F + + +L T+ +S H L IE +
Sbjct: 260 --------FTERNATHLNGGSYDYVFIDQKFKVQDHKVINLLTKNHGMVSDHYGLYIEIE 311
Query: 120 F 120
Sbjct: 312 L 312
>gi|163938364|ref|YP_001643248.1| endonuclease/exonuclease/phosphatase [Bacillus weihenstephanensis
KBAB4]
gi|163860561|gb|ABY41620.1| Endonuclease/exonuclease/phosphatase [Bacillus weihenstephanensis
KBAB4]
Length = 263
Score = 37.1 bits (84), Expect = 0.88, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + + GDFN ++ G + + L ++ ++
Sbjct: 156 DRLMERVNSNELSFLMGDFNNNARLEGEGYEYMMQKGLYDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S ++ S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKQNLRIDLILSNQSKTVNSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|116203121|ref|XP_001227372.1| hypothetical protein CHGG_09445 [Chaetomium globosum CBS 148.51]
gi|88177963|gb|EAQ85431.1| hypothetical protein CHGG_09445 [Chaetomium globosum CBS 148.51]
Length = 654
Score = 37.1 bits (84), Expect = 0.88, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 28/118 (23%), Gaps = 5/118 (4%)
Query: 5 QGEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + + + + AGDFN D +E
Sbjct: 499 QANVTGSFIAEILALDPAAKVIAAGDFNEFAFVQPMKTFSAISGMVDLDEAAKLPIEERY 558
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
N +LD+ + + + + +S H ++F
Sbjct: 559 TYAYDMNAQALDHMYVSPALAH---SKTTRFEHIHVNSWAAFDDVVSDHDASIALFNF 613
>gi|326432132|gb|EGD77702.1| hypothetical protein PTSG_08794 [Salpingoeca sp. ATCC 50818]
Length = 417
Score = 37.1 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 5/118 (4%)
Query: 4 QQGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ L + + V+ GDFN +NS + L + S
Sbjct: 284 QQARVLATSVQDFAREQGVGTSVLTGDFNGNVNSRSC--AHLISCGYESLFHAVHDRELS 341
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT-RRSKLSTHCPLTIEY 118
+ + + FV R + ++ + D LS H P+ +
Sbjct: 342 VTHRTHKGEDVGVDFVFMRSDDGAFTSDAAYALPQLYPDQAWPEDFDLSDHRPVVVSL 399
>gi|319442024|ref|ZP_07991180.1| hypothetical protein CvarD4_09711 [Corynebacterium variabile DSM
44702]
Length = 318
Score = 37.1 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 26/111 (23%), Gaps = 16/111 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L+ WA P V+AGDFN + + +
Sbjct: 223 LRDWASGV---DGPLVMAGDFNSTTAHPELRRLAGR---SAEMTDCGGGLFAAPTWPR-- 274
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ V + L+ S + S H + +
Sbjct: 275 --AGTPSPVPVLRLDHILVRGLTCQDSGVV------GVRGSDHAGIWADLR 317
>gi|299145012|ref|ZP_07038080.1| putative endonuclease/exonuclease/phosphatase family protein
[Bacteroides sp. 3_1_23]
gi|298515503|gb|EFI39384.1| putative endonuclease/exonuclease/phosphatase family protein
[Bacteroides sp. 3_1_23]
Length = 277
Score = 37.1 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 29/109 (26%), Gaps = 16/109 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
++ P ++ GDFN +S + + + T
Sbjct: 184 IEKTKGLDKPMILTGDFNALADSGP-----MKILYERFEIGCLNGNYGLTTGT------- 231
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
V D + D+ S +YD S H P+ +
Sbjct: 232 -PVPVKAIDFVLYTPDDGMSPKAYDVYYDAYVE---SDHFPVVATFSIN 276
>gi|284030755|ref|YP_003380686.1| endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
gi|283810048|gb|ADB31887.1| Endonuclease/exonuclease/phosphatase [Kribbella flavida DSM 17836]
Length = 242
Score = 37.1 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 12/110 (10%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L++ +P+++ GD N + + + G+ V
Sbjct: 137 LEQVLRGCRSFNLPYLLVGDLNEEPGGPVWDRLAAEGLTDLGVD------------VGPT 184
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S ID + + + + + S H PL IE
Sbjct: 185 YHSDNPERRIDGAHLSPELSGRVIPLDTVAGVTRADLAAASDHLPLLIEL 234
>gi|183179462|ref|ZP_02957673.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|183012873|gb|EDT88173.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
Length = 281
Score = 37.1 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 20/114 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L D+ P ++AGDFN + + L QE V
Sbjct: 186 QQLTALLDELRDFTGPVIVAGDFNS-------WSEARMALLSTQLASVGLQE------VR 232
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + F SD S H PL + +
Sbjct: 233 FSPDNRTTFINGLPLDHVFYRGLQLEKAEAPISD-------ASDHNPLLVRFRL 279
>gi|149689206|gb|ABR27973.1| salivary inositol polyphosphate 5-phosphatase [Triatoma infestans]
Length = 318
Score = 37.1 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 13/115 (11%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E ++ W Q+ + + DF +K F EK +
Sbjct: 216 EKIRNWVQQRKYAD--LLKLDQLKINKQTKEIFTDFNEK--EITFAPTFKLEKGTGTYST 271
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
KR + D + D K + K S H P+ ++D +
Sbjct: 272 KRRPAWTDRILYKSDTKKNITP---------TLYKSIESYKHSDHYPVQAQFDIK 317
>gi|153825332|ref|ZP_01977999.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|149741016|gb|EDM55085.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
Length = 281
Score = 37.1 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 20/114 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L D+ P ++AGDFN + + L QE V
Sbjct: 186 QQLTALLDELRDFTGPVIVAGDFNS-------WSEARMALLSTQLASVGLQE------VR 232
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + F SD S H PL + +
Sbjct: 233 FSPDNRTTFINGLPLDHVFYRGLQLEKAEAPISD-------ASDHNPLLVRFRL 279
>gi|153829932|ref|ZP_01982599.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|148874567|gb|EDL72702.1| conserved hypothetical protein [Vibrio cholerae 623-39]
Length = 281
Score = 37.1 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 20/114 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L D+ P ++AGDFN + + L QE V
Sbjct: 186 QQLTALLDELRDFTGPVIVAGDFNS-------WSEARMALLSTQLASVGLQE------VR 232
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + F SD S H PL + +
Sbjct: 233 FSPDNRTTFINGLPLDHVFYRGLQLEKAEAPISD-------ASDHNPLLVRFRL 279
>gi|120435872|ref|YP_861558.1| hypothetical protein GFO_1518 [Gramella forsetii KT0803]
gi|117578022|emb|CAL66491.1| conserved hypothetical protein, membrane [Gramella forsetii KT0803]
Length = 367
Score = 37.1 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 28/109 (25%), Gaps = 16/109 (14%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ + +P ++ GDFN G L+ + +
Sbjct: 235 EARDSDLPVMVIGDFNDVA-----WSSTTSLFQSVGELLDVRKGRSFYNTFD------AT 283
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
F++ + + F D S H P + +K
Sbjct: 284 SFIMKWSLDHIFVSEEFRASKIDVGSDIK-----SDHYPFYAQLYLQKE 327
>gi|326476302|gb|EGE00312.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Trichophyton tonsurans CBS 112818]
Length = 707
Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 32/131 (24%), Gaps = 25/131 (19%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINS---------------IGDTDDFWQKMDPDGLLIRFP- 56
+ + IP ++ GDFN + +S D + + G+ F
Sbjct: 552 IEYSSPSQIPILVCGDFNSRPSSAVYNLLAHGRLEEEHPDLRDRLYGNLTRQGMTHPFTL 611
Query: 57 ------QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKL 108
+ S N +DY + Y
Sbjct: 612 KSAYSAIGELSFTNYTPGFTDVIDYIWYSSNLLQVTGLLGEVDKEYLQRVPGFPNY-HFP 670
Query: 109 STHCPLTIEYD 119
S H L E+
Sbjct: 671 SDHLALMAEFS 681
>gi|301309385|ref|ZP_07215327.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
gi|300832474|gb|EFK63102.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
sp. 20_3]
Length = 304
Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 33/127 (25%), Gaps = 19/127 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKI--------NSIGDTDD--------FWQKMDPDGLLIRFP 56
Q +K G P + GDFN G + ++ +
Sbjct: 178 IQQVMKEGYPVFLTGDFNEPSFLDWTQRAADAGIHKIKVEWPATKAFSEIGMNDSYRTIH 237
Query: 57 QE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ ++ + + + +SF + + S H
Sbjct: 238 PDEVSTPGYTWTPVPSEQEILDRLDFVLYSGCKVTDSFITGESETTSDVVVSPYPSDHRM 297
Query: 114 LTIEYDF 120
+T ++F
Sbjct: 298 VTSCFNF 304
>gi|302665175|ref|XP_003024200.1| hypothetical protein TRV_01633 [Trichophyton verrucosum HKI 0517]
gi|291188246|gb|EFE43589.1| hypothetical protein TRV_01633 [Trichophyton verrucosum HKI 0517]
Length = 693
Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 31/126 (24%), Gaps = 25/126 (19%)
Query: 18 KTGIPFVIAGDFNRKINS---------------IGDTDDFWQKMDPDGLLIRFP------ 56
+ IP ++ GDFN + +S D + + G+ F
Sbjct: 543 PSQIPILVCGDFNSRPSSAVYNLLAHGRLEEEHPDLRDRLYGNLTRQGMTHPFTLKSAYS 602
Query: 57 -QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCP 113
+ S N +DY + Y S H
Sbjct: 603 AIGELSFTNYTPGFTDVIDYIWYSSNLLQVTGLLGEVDKEYLQRVPGFPNY-HFPSDHLA 661
Query: 114 LTIEYD 119
L E+
Sbjct: 662 LMAEFS 667
>gi|302503490|ref|XP_003013705.1| hypothetical protein ARB_00156 [Arthroderma benhamiae CBS 112371]
gi|291177270|gb|EFE33065.1| hypothetical protein ARB_00156 [Arthroderma benhamiae CBS 112371]
Length = 691
Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 31/126 (24%), Gaps = 25/126 (19%)
Query: 18 KTGIPFVIAGDFNRKINS---------------IGDTDDFWQKMDPDGLLIRFP------ 56
+ IP ++ GDFN + +S D + + G+ F
Sbjct: 541 PSQIPILVCGDFNSRPSSAVYNLLAHGRLEEEHPDLRDRLYGNLTRQGMTHPFTLKSAYS 600
Query: 57 -QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCP 113
+ S N +DY + Y S H
Sbjct: 601 AIGELSFTNYTPGFTDVIDYIWYSSNLLQVTGLLGEVDKEYLQRVPGFPNY-HFPSDHLA 659
Query: 114 LTIEYD 119
L E+
Sbjct: 660 LMAEFS 665
>gi|241392429|ref|XP_002409449.1| synaptojanin, putative [Ixodes scapularis]
gi|215497492|gb|EEC06986.1| synaptojanin, putative [Ixodes scapularis]
Length = 921
Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 17/140 (12%), Positives = 31/140 (22%), Gaps = 31/140 (22%)
Query: 13 ADQKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIRFPQ--------- 57
+ + + GDFN + + D W ++ L Q
Sbjct: 627 MGRTLNSHDYVFWCGDFNYRVDLENDDVKDLVRQGNWAELLKYDQLRVQQQQGQVFKNFL 686
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY----------------DQSDL 101
E E + D + + + +
Sbjct: 687 EGEINFAPTYKYDLFSDDYDTSDKCRIPAWTDRILFRRRRLFSEAGENDPFWSPGRIAHY 746
Query: 102 DTRRSKLSTHCPLTIEYDFE 121
K S H P+ + D E
Sbjct: 747 GRAELKTSDHRPVVADIDIE 766
>gi|213409736|ref|XP_002175638.1| inositol-1,4,5-trisphosphate 5-phosphatase [Schizosaccharomyces
japonicus yFS275]
gi|212003685|gb|EEB09345.1| inositol-1,4,5-trisphosphate 5-phosphatase [Schizosaccharomyces
japonicus yFS275]
Length = 894
Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 16/134 (11%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPD 49
+ L+ + ++I V GDFN +IN D M D
Sbjct: 733 AKNLRFLSSKRIYDNKQIVWMGDFNYRINLDYATTKKLALNGDFDYLYRYDQLQNAMRED 792
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + + + K + + +Y + D + + + + S
Sbjct: 793 HIFHGLTESQLTFPPTYKFDVGTSNYCPEKKQRTPSWTDRILITDNMSRLVYSSIDIQTS 852
Query: 110 THCPLTIEYDFEKG 123
H P+ +F+
Sbjct: 853 DHRPVFSILEFKAS 866
>gi|45187872|ref|NP_984095.1| ADL002Cp [Ashbya gossypii ATCC 10895]
gi|44982656|gb|AAS51919.1| ADL002Cp [Ashbya gossypii ATCC 10895]
Length = 945
Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 33/122 (27%), Gaps = 18/122 (14%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDT--------------DDFWQKMDPDGLLIRFPQE 58
++IK + GDFN +++ D Q+M F +
Sbjct: 699 KRIKDHDGIIWMGDFNYRILLSNEEVRRAILEGDYGKLFEKDQLNQQMIAGESFPYFNEM 758
Query: 59 KESTCNVIKRNKS--SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + K + S D R + + S S H P+
Sbjct: 759 EITFPPTYKFDPGTKSYDTSEKMRIPAWTDRILNRGEILKAISYGCAEDVIFSDHRPVYA 818
Query: 117 EY 118
+
Sbjct: 819 TF 820
>gi|71653816|ref|XP_815539.1| pantothenate kinase subunit [Trypanosoma cruzi strain CL Brener]
gi|70880601|gb|EAN93688.1| pantothenate kinase subunit, putative [Trypanosoma cruzi]
Length = 1480
Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 13/126 (10%), Positives = 26/126 (20%), Gaps = 19/126 (15%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSI--------------GDTDDFWQKMDPDGLLIRFPQ 57
+ + + IP V+AGDFN + + L
Sbjct: 214 YGENNEASKIPLVVAGDFNINGIDPHNGGKPTKIFMELMQELQPLGGGLSEVILDTHGYH 273
Query: 58 EKESTCN-VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS----KLSTHC 112
+ + F + + + LS H
Sbjct: 274 PSTRPSKLFFPSQSKLNRDSLTPQRQDFFFVTPAVDVRMACIKKFIASSRSPYVYLSDHF 333
Query: 113 PLTIEY 118
++
Sbjct: 334 GVSATL 339
>gi|315045670|ref|XP_003172210.1| synaptojanin-2 [Arthroderma gypseum CBS 118893]
gi|311342596|gb|EFR01799.1| synaptojanin-2 [Arthroderma gypseum CBS 118893]
Length = 1167
Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 10/110 (9%), Positives = 25/110 (22%), Gaps = 3/110 (2%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ P + GD + + + + + N +
Sbjct: 799 RIGMSNERVRPLIEKGDIDTLYQNDQLNLQMVAGLAFQYYMEGPVTFPPTY---RYDNGT 855
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + Q T K S H P+ ++ +
Sbjct: 856 DEYDTSEKQRIPAWCDRILWRGRILRQLAYKTAPLKFSDHRPVYGVFECD 905
>gi|269123233|ref|YP_003305810.1| hypothetical protein Smon_0452 [Streptobacillus moniliformis DSM
12112]
gi|268314559|gb|ACZ00933.1| hypothetical protein Smon_0452 [Streptobacillus moniliformis DSM
12112]
Length = 338
Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 14/102 (13%), Positives = 27/102 (26%), Gaps = 15/102 (14%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
++ +I GDFN + + D L
Sbjct: 251 ESNPKAIILGDFNATLRHGALNSITTHEDVLDYLSRFRR------GTWHSNFP-----IW 299
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + LI +Y +D + + S H + +E
Sbjct: 300 MSTSIDHILIPK----DTYRVKKVDVLKLRESDHRAIFVEIS 337
>gi|262192145|ref|ZP_06050306.1| hypothetical protein VIH_002527 [Vibrio cholerae CT 5369-93]
gi|262031994|gb|EEY50571.1| hypothetical protein VIH_002527 [Vibrio cholerae CT 5369-93]
Length = 281
Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 20/114 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L D+ P ++AGDFN + + L QE V
Sbjct: 186 QQLTALLDELRDFTGPVIVAGDFNS-------WSEARMALLSTQLASVGLQE------VR 232
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + F SD S H PL + +
Sbjct: 233 FSPDNRTTFINGLPLDHVFYRGLQLEKAEAPISD-------ASDHNPLLVRFRL 279
>gi|257896680|ref|ZP_05676333.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium Com12]
gi|257833245|gb|EEV59666.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium Com12]
Length = 273
Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 2/102 (1%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+T P GDFN +S G + + ++ ++ V K+
Sbjct: 172 ETRAPLFFLGDFNNPADSEGYHIVKKSGLLLQDSYVIANEKGKAAT-VEKKIDGWEQNT- 229
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + Y + +S H IE D
Sbjct: 230 EKLRIDFIFVPEGVQVKKYQRIFDGIDSPIISDHYGAEIEID 271
>gi|212716745|ref|ZP_03324873.1| hypothetical protein BIFCAT_01682 [Bifidobacterium catenulatum DSM
16992]
gi|212660449|gb|EEB21024.1| hypothetical protein BIFCAT_01682 [Bifidobacterium catenulatum DSM
16992]
Length = 344
Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 12/109 (11%), Positives = 21/109 (19%), Gaps = 15/109 (13%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
K G V+ GD N + L +
Sbjct: 251 LATTQKQGDITVVLGDLNSGTDHPSFRKLLNSGFKDAALCEAKGRHATFPSW-------- 302
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + + D S S H L +
Sbjct: 303 ----LPWPRIILDHVLFTKGLYASDVSSFCVEG---SDHLALVATLTLK 344
>gi|297199103|ref|ZP_06916500.1| endonuclease/exonuclease/phosphatase [Streptomyces sviceus ATCC
29083]
gi|197715179|gb|EDY59213.1| endonuclease/exonuclease/phosphatase [Streptomyces sviceus ATCC
29083]
Length = 238
Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 11/124 (8%), Positives = 20/124 (16%), Gaps = 20/124 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L V GD N + + ++
Sbjct: 130 QAGMLLDRLAGMGVEHA--VAGGDLNDRPT-----GPAFSRIADSLQDCWATSPTGGEVT 182
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----DLDTRRSKLSTHCPLTIEYD 119
+ R + +T + H P+ D
Sbjct: 183 WTRTEP--------HRRIDAIFATKGIEVRGCGVPLDLPGITETDLRAATDHLPVLATLD 234
Query: 120 FEKG 123
Sbjct: 235 IPAS 238
>gi|147816091|emb|CAN72890.1| hypothetical protein VITISV_022310 [Vitis vinifera]
Length = 1356
Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 17/106 (16%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD---------FWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
P+ I GDFN + S + F + ++ GL+ Q
Sbjct: 185 EDPWCIGGDFNITLFSSERSSQRRISSAMRKFAETVNDLGLVDLPLQG-GDFTW------ 237
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ FL+ S+ + +S H P+ +
Sbjct: 238 NGGLNNQTWARLDRFLVSPSWIDQFSGIN-QCRLPRPVSDHFPIML 282
>gi|21232830|ref|NP_638747.1| hypothetical protein XCC3401 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767099|ref|YP_241861.1| hypothetical protein XC_0763 [Xanthomonas campestris pv. campestris
str. 8004]
gi|188990191|ref|YP_001902201.1| putative nuclease / phosphatase [Xanthomonas campestris pv.
campestris str. B100]
gi|21114655|gb|AAM42671.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66572431|gb|AAY47841.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|167731951|emb|CAP50137.1| putative nuclease / phosphatase [Xanthomonas campestris pv.
campestris]
Length = 245
Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 9/109 (8%), Positives = 26/109 (23%), Gaps = 21/109 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + ++ GDFN + + P R
Sbjct: 151 AFIAELLSDHPNVMLMGDFNCVADRPEMQALY-------RHTRLQPPSCVVHTFPSWRPD 203
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++D+ ++ + + S H + ++
Sbjct: 204 RAIDHILVSDSL--------------VIEHTEAIPAAFSDHLAVGMDLR 238
>gi|291513563|emb|CBK62773.1| Metal-dependent hydrolase [Alistipes shahii WAL 8301]
Length = 406
Score = 37.1 bits (84), Expect = 0.91, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 26/130 (20%), Gaps = 24/130 (18%)
Query: 13 ADQKIKTGIPFVIAGDFNRKIN--------SIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
A + +TG P ++ GD N N S R +
Sbjct: 276 ARKSAETGCPVIVLGDMNCTPNRLIGGIPSSPQVYKSH--GFLDTFTQTRQRTNENYATY 333
Query: 65 VIKRN----KSSLDYFVIDRDNKNFLIDNSFSIV---SYDQSDLDTRRSK-------LST 110
R + + + S
Sbjct: 334 SSSAAVVEECRVEVGENGSRRIDYIFTYPESRVTTTRYATVLNFAEDGTANKLRSPLPSD 393
Query: 111 HCPLTIEYDF 120
H P+ E +F
Sbjct: 394 HHPVRAELNF 403
>gi|294854009|ref|ZP_06794681.1| endonuclease/exonuclease/phosphatase [Brucella sp. NVSL 07-0026]
gi|294819664|gb|EFG36664.1| endonuclease/exonuclease/phosphatase [Brucella sp. NVSL 07-0026]
Length = 285
Score = 37.1 bits (84), Expect = 0.92, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 27/121 (22%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + + +P ++ GD N + + +
Sbjct: 167 EQQAETILSALQE--ADTLPTLLIGDLN-------EWRIGKRSSLSALMPTFNHVATAVP 217
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L I S + R S H P+ D +
Sbjct: 218 SFPSR---------FPVLALDRVLGAPDNLITSVKVHNTPLARL-ASDHLPIKAHLDLKT 267
Query: 123 G 123
Sbjct: 268 A 268
>gi|270295831|ref|ZP_06202031.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270273235|gb|EFA19097.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 249
Score = 37.1 bits (84), Expect = 0.92, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 26/104 (25%), Gaps = 19/104 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
P +AGD N S +++ + S R +
Sbjct: 157 KALQNVDKPIFMAGDMNSAPASAP-------QLELAKHFATL-NDTTSYTFPADRPNRCI 208
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS-THCPLTI 116
DY S + +D +S H P+ +
Sbjct: 209 DYI----------YGYSKNGYRFDVQYRKVIEDTISSDHRPVQV 242
>gi|156052389|ref|XP_001592121.1| hypothetical protein SS1G_06360 [Sclerotinia sclerotiorum 1980]
gi|154704140|gb|EDO03879.1| hypothetical protein SS1G_06360 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 311
Score = 37.1 bits (84), Expect = 0.92, Method: Composition-based stats.
Identities = 13/94 (13%), Positives = 22/94 (23%), Gaps = 1/94 (1%)
Query: 27 GDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFL 86
GDFN + + P+ K + + +D D
Sbjct: 210 GDFNSPPDDEAYKTMTSSTSTMADIRDLVPEVKRYGNEMTFTSFGYVDNTPSRIDFIFSA 269
Query: 87 IDNSFSIVSYDQSDLDTRRS-KLSTHCPLTIEYD 119
D Y LS H + + +
Sbjct: 270 KDTMAKYGIYAVLSNRYDDEVYLSDHRAVVADIE 303
>gi|83312933|ref|YP_423197.1| hypothetical protein amb3834 [Magnetospirillum magneticum AMB-1]
gi|82947774|dbj|BAE52638.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 330
Score = 37.1 bits (84), Expect = 0.92, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 14/131 (10%)
Query: 5 QGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP------ 56
Q ++ ++ V+ GDFN + G D +
Sbjct: 198 QALEVRLLVEEIFDARPDALVVVCGDFNAGEHEAGMRIIKGDDEDTGNGHLAMRMLVPLE 257
Query: 57 ---QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL---ST 110
E + + LD+ ++ R + + + + S
Sbjct: 258 RSLPEGQRYSVIHHGRPVMLDHILVSRPLLGWYLGAEIHNETLGDELVSPATIHAPPESY 317
Query: 111 HCPLTIEYDFE 121
H P+ E+
Sbjct: 318 HAPVVAEFSLP 328
>gi|296411058|ref|XP_002835252.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295628027|emb|CAZ79373.1| unnamed protein product [Tuber melanosporum]
Length = 431
Score = 37.1 bits (84), Expect = 0.93, Method: Composition-based stats.
Identities = 11/143 (7%), Positives = 30/143 (20%), Gaps = 33/143 (23%)
Query: 16 KIKTGIPFVIAGDFNRK----------------INSIGDTDDFWQKMDPDGLLIRFPQEK 59
+ GD N + + ++ + + L +
Sbjct: 218 LYSPTAHLFVLGDLNYRTADSKPVGPEFIVFPQPDDPPSSNKHYSNLLGHDQLTPQRKAN 277
Query: 60 ESTCN---------VIKRN----KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
++ + S D+ + + + + + S
Sbjct: 278 KTLHGLEEASITFPPTYKYHISKTSPDDHSWNWAPLRWPSWTDRILYLPSENLRVHKYTS 337
Query: 107 ----KLSTHCPLTIEYDFEKGNV 125
K S H P+ +
Sbjct: 338 IQEIKSSDHRPVVAHISIPAEPL 360
>gi|302911917|ref|XP_003050598.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256731535|gb|EEU44885.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1227
Score = 37.1 bits (84), Expect = 0.93, Method: Composition-based stats.
Identities = 9/83 (10%), Positives = 20/83 (24%), Gaps = 7/83 (8%)
Query: 39 TDDFWQKMDPDGLLIRFPQEKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ D + I F + +
Sbjct: 1084 RNPAFKLRAFDEMPITFAPTYKYDVGTDNYDTSEKRRSPAWCDRLLYRGRG------RVE 1137
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
Q D ++S H P+T ++
Sbjct: 1138 QLDYRRHEVRVSDHRPVTGSFNL 1160
>gi|237740619|ref|ZP_04571100.1| dnase I homologous protein dhp2 precursor [Fusobacterium sp.
2_1_31]
gi|229422636|gb|EEO37683.1| dnase I homologous protein dhp2 precursor [Fusobacterium sp.
2_1_31]
Length = 286
Score = 37.1 bits (84), Expect = 0.93, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 31/106 (29%), Gaps = 5/106 (4%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ K K +IAGDFN ++ D + ++T R
Sbjct: 177 DYFQDKDKKENDILIAGDFNLYALDESFR-PMYKH--RDKITYAIDPAIKTTIGTKGRAN 233
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S S + + + D R +S H P+ I
Sbjct: 234 SYD--NFFFSQKYTTEFTGSSGALDFSEKDPQLMRQIISDHIPVFI 277
>gi|219882679|ref|YP_002477843.1| Endonuclease/exonuclease/phosphatase [Arthrobacter chlorophenolicus
A6]
gi|219861685|gb|ACL42026.1| Endonuclease/exonuclease/phosphatase [Arthrobacter chlorophenolicus
A6]
Length = 325
Score = 37.1 bits (84), Expect = 0.93, Method: Composition-based stats.
Identities = 16/141 (11%), Positives = 29/141 (20%), Gaps = 27/141 (19%)
Query: 5 QGEWLKKWADQK----IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDG-------LLI 53
Q + ++AGDFN S + Q +
Sbjct: 150 QMTAIDNRVRTLMGRYQDQNPVAILAGDFNTLPTSDTNRYLNGQGTGANDGYTFWTEAFA 209
Query: 54 RFPQEKESTCNVIKRNKSSLDYF---------VIDRDNKNFLIDNSFSIVS-------YD 97
+E+ + + DR
Sbjct: 210 VVGNPEEAATVAAGNYWAQQTARSVGIEFPEMLPDRRIDYVWTYGWAYGRPGCPVAMQRS 269
Query: 98 QSDLDTRRSKLSTHCPLTIEY 118
+D S H LT+++
Sbjct: 270 FTDTTRYGYPASDHYGLTVDF 290
>gi|147814926|emb|CAN70311.1| hypothetical protein VITISV_022886 [Vitis vinifera]
Length = 1856
Score = 37.1 bits (84), Expect = 0.93, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 15/106 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ + GDFN + + + + D L+ P + S
Sbjct: 1023 DDPWCLGGDFNITLFQHERSSQRRTSSAMRRFAEFVDDLELVDLPLQGGEFTW------S 1076
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ S+ S H P+ +E
Sbjct: 1077 GGLNNQAWARLDRFLVSPSWLDQFSGV-TQGRLSRPTSDHFPIVLE 1121
>gi|115454467|ref|NP_001050834.1| Os03g0663700 [Oryza sativa Japonica Group]
gi|113549305|dbj|BAF12748.1| Os03g0663700 [Oryza sativa Japonica Group]
Length = 274
Score = 36.7 bits (83), Expect = 0.94, Method: Composition-based stats.
Identities = 11/123 (8%), Positives = 23/123 (18%), Gaps = 22/123 (17%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGD------TDDFW--------------QKMDPDGLL 52
+ I + GD N ++ + +
Sbjct: 107 ETILDHDRIIWLGDLNYRIALSYRSVKALVEMHNWKQLLEKDQLRIEQRYGRVFSGWKEG 166
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ R R + + +Q S+ S H
Sbjct: 167 RIYFPPTYKYSYNSDRYAGDDMRPNEKRRTPAWCDRILWYGRGLNQLCYVRGESRFSDHR 226
Query: 113 PLT 115
P+
Sbjct: 227 PVY 229
>gi|291513858|emb|CBK63068.1| Exonuclease III [Alistipes shahii WAL 8301]
Length = 318
Score = 36.7 bits (83), Expect = 0.94, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 25/112 (22%), Gaps = 8/112 (7%)
Query: 15 QKIKTGIPFVIAGDFNRK-INSIG------DTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
++ +++AGDFN + + + + V
Sbjct: 194 RRYPVEPLWLMAGDFNSYSPKDADAMPANTYFETHSIVLKSGYCDALRDRHSQFFHTVPT 253
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
D I + S H P+ IE+
Sbjct: 254 PYNGESTADQRRIDFIYASQAVMREITDSRIIYDEFTA-THSDHYPVMIEFR 304
>gi|167918661|ref|ZP_02505752.1| endonuclease/exonuclease/phosphatase family superfamily protein
[Burkholderia pseudomallei BCC215]
Length = 114
Score = 36.7 bits (83), Expect = 0.94, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ ++
Sbjct: 12 ARAADAIVCGDFNSAYRSDAYRRFLAPFPDAPRFVDAWLARHPGKTPPMTAGVYDTAQWS 71
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F+ D +S + D + S H P+ +E
Sbjct: 72 EGPMTCDFAFVTDTLVRRLSRCEID---GTVRASDHQPIVLELS 112
>gi|167738257|ref|ZP_02411031.1| endonuclease/exonuclease/phosphatase family superfamily protein
[Burkholderia pseudomallei 14]
Length = 115
Score = 36.7 bits (83), Expect = 0.94, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ ++
Sbjct: 13 ARAADAIVCGDFNSAYRSDAYRRFLAPFPDAPRFVDAWLARHPGKTPPMTAGVYDTAQWS 72
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F+ D +S + D + S H P+ +E
Sbjct: 73 EGPMTCDFAFVTDTLVRRLSRCEID---GTVRASDHQPIVLELS 113
>gi|296110636|ref|YP_003621017.1| exodeoxyribonuclease A [Leuconostoc kimchii IMSNU 11154]
gi|295832167|gb|ADG40048.1| exodeoxyribonuclease A [Leuconostoc kimchii IMSNU 11154]
Length = 272
Score = 36.7 bits (83), Expect = 0.95, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 33/131 (25%), Gaps = 21/131 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------------------MDP 48
+ + + Q + P + +GD N I +
Sbjct: 144 DAYRSYL-QGLDNKKPVIFSGDMNVAHQEIDLKNFKTNHHSAGFTDPEREKFSALLEAGF 202
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
L + + + +L+ N + D +DT +
Sbjct: 203 TDTLRMKNPDTPGIYTWWAQISKTSKINNSGWRIDYYLVSNRLAAKVSDSHVIDTGLRQ- 261
Query: 109 STHCPLTIEYD 119
H P+ +E +
Sbjct: 262 -DHAPIALEIN 271
>gi|242072049|ref|XP_002451301.1| hypothetical protein SORBIDRAFT_05g027325 [Sorghum bicolor]
gi|241937144|gb|EES10289.1| hypothetical protein SORBIDRAFT_05g027325 [Sorghum bicolor]
Length = 349
Score = 36.7 bits (83), Expect = 0.95, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 15/116 (12%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------DFWQKMDPDGLLIRFPQEKE 60
L + D + + P++ GDFN + + + +++ L+ +
Sbjct: 30 LAELIDSQTASNAPWLCLGDFNLILEARDKNNNNLNRCQMRKFRQALDASELMEINLQNR 89
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ +L + + + + + L S LS H P+ +
Sbjct: 90 RYTWSNGQRNPTLVH------LDRVFCNKEWDDI-FSGYGLHALSSSLSDHSPIFL 138
>gi|225558763|gb|EEH07047.1| DNA lyase Apn2 [Ajellomyces capsulatus G186AR]
Length = 636
Score = 36.7 bits (83), Expect = 0.95, Method: Composition-based stats.
Identities = 17/149 (11%), Positives = 31/149 (20%), Gaps = 43/149 (28%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKIN----------------------SIGDTDDFWQKM 46
L G ++ GD N + S F Q +
Sbjct: 182 LDARVRNLAAMGKRVIVTGDLNISGSQIDSARALEGVRKGTLTDSEFVSSPVRRIFNQLV 241
Query: 47 D----------------PDGLLIRFPQEK-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
D L ++ ++ +R + + D
Sbjct: 242 DGGKVIGDRDHGRETPVLVDLCRKYHPDRLGMYTCWEQRVNARPGNYGARIDYVLCDRSM 301
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S HCP+ E
Sbjct: 302 QDWFSASNI----QEGLMGSDHCPVYAEL 326
>gi|326913290|ref|XP_003202972.1| PREDICTED: LOW QUALITY PROTEIN: synaptojanin-1-like [Meleagris
gallopavo]
Length = 1647
Score = 36.7 bits (83), Expect = 0.96, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 22/101 (21%), Gaps = 7/101 (6%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ G N D F D +R
Sbjct: 832 FLEGKINFAPTYK--YDLFSDDYDTSEKCRTPAWTDRIL--WRRRKWPFDRSAEDLDLLN 887
Query: 84 NFLIDNSFSIVSYDQSDLDTRRS---KLSTHCPLTIEYDFE 121
DNS +++ L K S H P+ D +
Sbjct: 888 ASFHDNSKVPYTWNPGTLLHYGRAELKTSDHRPVVALIDID 928
>gi|312882581|ref|ZP_07742321.1| hypothetical protein VIBC2010_09472 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369741|gb|EFP97253.1| hypothetical protein VIBC2010_09472 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 270
Score = 36.7 bits (83), Expect = 0.96, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 10/117 (8%)
Query: 4 QQGEWLKKWADQKIKTGIPF--VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q E L + +KT P ++ GDFN + S D ++ + F + K+
Sbjct: 158 EQVEILHRLVFGLVKTHTPTYTILCGDFNASLASETT-DPAYRSL-----FSYFQKYKQQ 211
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S + ID + + S+ + + S L LS H + +E
Sbjct: 212 VTYNGHGKAQSGKDWDIDWILTSSNLPLSYQLRRSEHSALQ--DLYLSDHDLVRLEL 266
>gi|118083842|ref|XP_416706.2| PREDICTED: similar to synaptojanin 1 [Gallus gallus]
Length = 1588
Score = 36.7 bits (83), Expect = 0.96, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 22/101 (21%), Gaps = 7/101 (6%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ G N D F D +R
Sbjct: 773 FLEGKINFAPTYK--YDLFSDDYDTSEKCRTPAWTDRIL--WRRRKWPFDRSAEDLDLLN 828
Query: 84 NFLIDNSFSIVSYDQSDLDTRRS---KLSTHCPLTIEYDFE 121
DNS +++ L K S H P+ D +
Sbjct: 829 ASFHDNSKVPYTWNPGTLLHYGRAELKTSDHRPVVALIDID 869
>gi|120435157|ref|YP_860843.1| hypothetical protein GFO_0800 [Gramella forsetii KT0803]
gi|117577307|emb|CAL65776.1| conserved hypothetical protein, membrane [Gramella forsetii KT0803]
Length = 344
Score = 36.7 bits (83), Expect = 0.96, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 33/116 (28%), Gaps = 19/116 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L K+ +IAGDFN S D Q D
Sbjct: 246 QEQAEIL---LADIKKSPYRTIIAGDFNNTSFS-YIYDLIKQ--DDRFNDAFLEAGSGFG 299
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ LI+N+ I + D+D S H P+ +
Sbjct: 300 KSFKLNY--------FPLRIDFLLIENNMKINEFRILDIDY-----SDHYPVLTKI 342
>gi|66356394|ref|XP_625375.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46226387|gb|EAK87392.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 500
Score = 36.7 bits (83), Expect = 0.96, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 32/145 (22%), Gaps = 47/145 (32%)
Query: 21 IPFVIAGDFNRKINSIGDTDD--------------------------------------- 41
++AGDFN + I DD
Sbjct: 238 RNVILAGDFNIILEKIDCYDDCGILDNCKLAPCMLTSPKEIFETSSFAKAYMHMRRMNIE 297
Query: 42 FWQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ + + + N+S + D + + D
Sbjct: 298 MIKGYCLVDAYRHYYPRTNNKYTCWSQMNQSRIRNQGTRIDLFLISKGLISESIKCEILD 357
Query: 101 LDTRRSKLSTHCPLTIEY---DFEK 122
S HCP+ + +FE
Sbjct: 358 HIYG----SDHCPILLILKTGEFES 378
>gi|110633268|ref|YP_673476.1| endonuclease/exonuclease/phosphatase [Mesorhizobium sp. BNC1]
gi|110284252|gb|ABG62311.1| Endonuclease/exonuclease/phosphatase [Chelativorans sp. BNC1]
Length = 335
Score = 36.7 bits (83), Expect = 0.96, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 14/118 (11%)
Query: 4 QQGEWLKKWADQKIKT-GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + A G ++AGD N +++ G R +
Sbjct: 217 EQSQQIGPVAKTLETKLGSSAILAGDLNAAP-----WSATAERLAKAGGFTRL---RHIG 268
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ RN N + +++ S S H PL +E+
Sbjct: 269 PTWLARNLPDWLRRTAGLPIDNIFVKGRVAVLQ-----TKRLESVGSDHLPLLVEFSL 321
>gi|228995734|ref|ZP_04155396.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides Rock3-17]
gi|228764016|gb|EEM12901.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides Rock3-17]
Length = 263
Score = 36.7 bits (83), Expect = 0.97, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 6/109 (5%)
Query: 13 ADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
Q + ++ GDFN ++ G + + L E +
Sbjct: 158 LTQHVNEKELSILMGDFNNNARLQGEGYDYLMQKGLYDTYELAFKKDEGTTVQ----GKI 213
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + +++S R+ +S H + ++ D
Sbjct: 214 AGWDENKQNLRIDLILSNKPKTVISSKVIFNGINRNIISDHFGVEVQLD 262
>gi|225439870|ref|XP_002274849.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 523
Score = 36.7 bits (83), Expect = 0.97, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 30/123 (24%), Gaps = 22/123 (17%)
Query: 19 TGIPFVIAGDFNRKINSI--GDTDDF----WQKMDPDGLLIR---------FPQEKESTC 63
+ GD N ++ S + WQ + L +E
Sbjct: 333 EHDKIIWLGDLNYRLASGCGDVYELLKRNNWQALLEKDQLKIEQRSGRVFKGWEEGRIYF 392
Query: 64 NVIKRNKSSLDY-------FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ ++ D+ R + + Q S+ S H P+
Sbjct: 393 APTYKYLANSDHYVVHTSKSKEKRRTPAWCDRILWKGEGLKQMWYLRGESRFSDHRPVYA 452
Query: 117 EYD 119
+
Sbjct: 453 MFS 455
>gi|147845298|emb|CAN83372.1| hypothetical protein VITISV_034945 [Vitis vinifera]
Length = 1471
Score = 36.7 bits (83), Expect = 0.97, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 15/106 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ + GDFN ++ ++ + ++ + L+ P + RN
Sbjct: 938 DDPWCLGGDFNITLSQRERSNQGSLTGAMRRFVQVVDELELLDLPIQGGVFSWSRGRNNQ 997
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
S FL+ ++ S H P+ ++
Sbjct: 998 S------WARLDRFLVTQNWLDHFSGV-VQSRLPRPTSDHFPILLK 1036
>gi|125606578|gb|EAZ45614.1| hypothetical protein OsJ_30281 [Oryza sativa Japonica Group]
Length = 1068
Score = 36.7 bits (83), Expect = 0.97, Method: Composition-based stats.
Identities = 12/97 (12%), Positives = 28/97 (28%), Gaps = 4/97 (4%)
Query: 26 AGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE----KESTCNVIKRNKSSLDYFVIDRD 81
AGDFN + + + V + + +
Sbjct: 369 AGDFNETLWQFEHFSEKRRSESQMHAFRDILSTCELFDLGFSGVPYTYDNRREGRNNVKV 428
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ ++ ++ + S + S S HCP+ + +
Sbjct: 429 RLDRVLADNSWRDIFSNSQVVHMTSPCSDHCPILVRF 465
>gi|66828651|ref|XP_647679.1| hypothetical protein DDB_G0268608 [Dictyostelium discoideum AX4]
gi|60475822|gb|EAL73757.1| hypothetical protein DDB_G0268608 [Dictyostelium discoideum AX4]
Length = 1660
Score = 36.7 bits (83), Expect = 0.97, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 22/96 (22%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN N DD Q Q + +
Sbjct: 214 IIAGDFNCIHNDNSLLDDIIQSY--TYQHHLIDQGEFKNTPTHTHGNRLDRIYTQYNRID 271
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + LS H P++
Sbjct: 272 PENIYTQVHQIPSS----------LSDHNPISTTIS 297
>gi|294782305|ref|ZP_06747631.1| endonuclease/exonuclease/phosphatase family protein [Fusobacterium
sp. 1_1_41FAA]
gi|294480946|gb|EFG28721.1| endonuclease/exonuclease/phosphatase family protein [Fusobacterium
sp. 1_1_41FAA]
Length = 286
Score = 36.7 bits (83), Expect = 0.97, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 31/106 (29%), Gaps = 5/106 (4%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ K K +IAGDFN ++ D + ++T R
Sbjct: 177 DYFQDKDKKENDILIAGDFNLYALDESFR-PMYKH--RDKITYAIDPAIKTTIGTKGRAN 233
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S S + + + D R +S H P+ I
Sbjct: 234 SYD--NFFFSQKYTTEFTGSSGALDFSEKDPQLMRQIISDHIPVFI 277
>gi|261334720|emb|CBH17714.1| pantothenate kinase subunit, putative [Trypanosoma brucei gambiense
DAL972]
Length = 1467
Score = 36.7 bits (83), Expect = 0.97, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 19/125 (15%)
Query: 19 TGIPFVIAGDF--------NRKINSIGDTDDF--WQKMDPDGLLIRF-----PQEKESTC 63
IPFV+AGDF N + D Q + F T
Sbjct: 218 AQIPFVLAGDFDVNGINLHNVGQPTKKYEDLLGELQALGSGVREAVFDAQHRHPPTRPTE 277
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL----STHCPLTIEYD 119
+ + F + ++ ++ + D + + S H ++
Sbjct: 278 LFFPTQSKLVRNSFSPQRQDYFFVSHTVAVKNPDIHKFVSDSQQPYTYLSDHFGVSAVLA 337
Query: 120 FEKGN 124
+ +
Sbjct: 338 IPQTS 342
>gi|261820454|ref|YP_003258560.1| hypothetical protein Pecwa_1139 [Pectobacterium wasabiae WPP163]
gi|261604467|gb|ACX86953.1| Endonuclease/exonuclease/phosphatase [Pectobacterium wasabiae
WPP163]
Length = 261
Score = 36.7 bits (83), Expect = 0.97, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 21/114 (18%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L +Q + P ++AGDFN Q++ + +E
Sbjct: 168 KQLAAIGEQLVHHQGPAIMAGDFNA---------WSQQRISALNRFAAGMRLQEVCFVDD 218
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+R K+ + + +S + S H PL +E+
Sbjct: 219 QRRKAFGRPLDFVFYRELIVNQSSVLVT------------TASDHNPLLVEFSL 260
>gi|167893940|ref|ZP_02481342.1| endonuclease/exonuclease/phosphatase family superfamily protein
[Burkholderia pseudomallei 7894]
Length = 139
Score = 36.7 bits (83), Expect = 0.97, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ ++
Sbjct: 37 ARAADAIVCGDFNSAYRSDAYRRFLAPFPDAPRFVDAWLARHPGKTPPMTAGVYDTAQWS 96
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F+ D +S + D + S H P+ +E
Sbjct: 97 EGPMTCDFAFVTDTLVRRLSRCEID---GTVRASDHQPIVLELS 137
>gi|71755785|ref|XP_828807.1| pantothenate kinase subunit [Trypanosoma brucei TREU927]
gi|70834193|gb|EAN79695.1| pantothenate kinase subunit, putative [Trypanosoma brucei]
Length = 1467
Score = 36.7 bits (83), Expect = 0.97, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 34/125 (27%), Gaps = 19/125 (15%)
Query: 19 TGIPFVIAGDF--------NRKINSIGDTDDF--WQKMDPDGLLIRF-----PQEKESTC 63
IPFV+AGDF N + D Q + F T
Sbjct: 218 AQIPFVLAGDFDVNGINLHNVGQPTKKYEDLLGELQALGSGVREAVFDAQHRHPPTRPTE 277
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL----STHCPLTIEYD 119
+ + F + ++ ++ + D + + S H ++
Sbjct: 278 LFFPTQSKLVRNSFSPQRQDYFFVSHTVAVKNPDIHKFVSDSQQPYTYLSDHFGVSAVLA 337
Query: 120 FEKGN 124
+ +
Sbjct: 338 IPQTS 342
>gi|329961876|ref|ZP_08299890.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
fluxus YIT 12057]
gi|328531316|gb|EGF58160.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
fluxus YIT 12057]
Length = 662
Score = 36.7 bits (83), Expect = 0.98, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 31/122 (25%), Gaps = 15/122 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSI-------------GDTDDFWQKMDPDGLLIRFPQEK 59
++TG+P +I GDFN + + M +G F ++
Sbjct: 539 IVPNLETGMPVIITGDFNSCSHLDWTERAKPLHQGYGPVNFPVSRYMQENGFKDSFREKN 598
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPLTIE 117
+++ + +S S H +
Sbjct: 599 PDEVTYQGGTVAAIYGQMQMSRIDFIYYKGKLKALSSKIVRTAPEIDYVWASDHAAVLTV 658
Query: 118 YD 119
++
Sbjct: 659 FE 660
>gi|260775755|ref|ZP_05884651.1| deoxyribonuclease I-like 2 precursor (DNase I-like 2) [Vibrio
coralliilyticus ATCC BAA-450]
gi|260608171|gb|EEX34340.1| deoxyribonuclease I-like 2 precursor (DNase I-like 2) [Vibrio
coralliilyticus ATCC BAA-450]
Length = 294
Score = 36.7 bits (83), Expect = 0.98, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 34/117 (29%), Gaps = 5/117 (4%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
++ + L + ++ GD N + + + DG + + ++
Sbjct: 180 EEVDALSDVVTTAIQASAIQDVLVLGDLNADCGYMNQHERETSPLFGDGFTMLIGDDVDT 239
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
T + D V+ + D + + +S H P+ +
Sbjct: 240 TTGKTH---CAYDRLVVTNSLVPRIEHARVVAFDDDLDLDEAQTKAVSDHYPVALTL 293
>gi|239627663|ref|ZP_04670694.1| exodeoxyribonuclease III [Clostridiales bacterium 1_7_47_FAA]
gi|239517809|gb|EEQ57675.1| exodeoxyribonuclease III [Clostridiales bacterium 1_7_47FAA]
Length = 311
Score = 36.7 bits (83), Expect = 0.98, Method: Composition-based stats.
Identities = 13/98 (13%), Positives = 25/98 (25%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P + GDFN + G+ D + + + V
Sbjct: 208 PVWLMGDFNSPAHVRGEGRDLIRGFGWLDSYELAGSKDSGITVGHAIDGWREQGDVSGMR 267
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S + +S H + +EY+
Sbjct: 268 IDYIWTSRKVPVRSSRVIFNGSYEPIVSDHYGIIVEYE 305
>gi|225453594|ref|XP_002266993.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 453
Score = 36.7 bits (83), Expect = 0.98, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 15/106 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD--------FWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ I GDFN + + ++ D L FP +
Sbjct: 125 EDPWCIGGDFNIVRFLKERRNAPRLTTEMRRFSEVIRDLGLRDFPLTGGHFTWI------ 178
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+FL+ + + + T +S H P+ +E
Sbjct: 179 GGLNSQAASRLDHFLVSDQWKDH-FSAITQSTLPRLVSDHNPIVLE 223
>gi|309810408|ref|ZP_07704242.1| endonuclease/exonuclease/phosphatase family protein [Dermacoccus
sp. Ellin185]
gi|308435648|gb|EFP59446.1| endonuclease/exonuclease/phosphatase family protein [Dermacoccus
sp. Ellin185]
Length = 387
Score = 36.7 bits (83), Expect = 0.99, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 33/116 (28%), Gaps = 18/116 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E L +W Q+ + V+AGDFN ++ + + Q
Sbjct: 290 QLEALGRW--QRGENAPHLVMAGDFNASTAH-----PAFRHLADGLIDAFPAQHGNWPPT 342
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
D V + ++ F V + + H + + +
Sbjct: 343 W------PQDAVVPPFAQIDHILTRGFVPVDAGTFTVP-----GTDHAGVWSDLRY 387
>gi|308178124|ref|YP_003917530.1| extracellular nuclease [Arthrobacter arilaitensis Re117]
gi|307745587|emb|CBT76559.1| putative extracellular nuclease [Arthrobacter arilaitensis Re117]
Length = 319
Score = 36.7 bits (83), Expect = 0.99, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 28/115 (24%), Gaps = 20/115 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ + W + P V+AGDFN G
Sbjct: 224 QAVDGWTGGQ--RDHPLVLAGDFNSVRAHPGFRALTNDGFSEAD-----------GIWPA 270
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + + S + S D S H ++ +F+
Sbjct: 271 STWPADRKFNAMIGLDHIMSRGASVTEFSVHAVD-------GSDHLAVSATVEFD 318
>gi|256783093|ref|ZP_05521524.1| hypothetical protein SlivT_01240 [Streptomyces lividans TK24]
Length = 288
Score = 36.7 bits (83), Expect = 0.99, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 26/107 (24%), Gaps = 18/107 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+++ ++ GDFN + D W TC +S
Sbjct: 198 LAKEVARHERAIVVGDFNAVPEASEL-DPMWSLATDTDPQC--HPAPGGTCEPTTDWQSK 254
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
DY + R+ S H L + D
Sbjct: 255 FDYVFLRGVAPREH---------------RVVRTAHSDHDLLYADLD 286
>gi|145589572|ref|YP_001156169.1| endonuclease/exonuclease/phosphatase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047978|gb|ABP34605.1| Endonuclease/exonuclease/phosphatase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 250
Score = 36.7 bits (83), Expect = 0.99, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 22/121 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKIN--SIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + ++ ++ + P ++AGDFN N S + + ++
Sbjct: 150 ERQLTEIIRYIEE-LTGDAPTIVAGDFNDWRNRISAPMREAGFNEVFEVLTGA------- 201
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + F + S + KLS H +T E +
Sbjct: 202 ---------PARTFPSIRPMLAMDRIYVRGFKVHSVEILHE---WLKLSDHLGITAELEL 249
Query: 121 E 121
+
Sbjct: 250 K 250
>gi|332322174|emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1383
Score = 36.7 bits (83), Expect = 1.00, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 2/107 (1%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
K+ + + +P ++ GDFN + + + F QE +
Sbjct: 124 KQIIEFQNSNPLPCLLVGDFNEVLRPSERGSLSFSH-NGINDFKSFVQELKLLEIPSSSR 182
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ Y + + L+ + + + + LS HCPL +
Sbjct: 183 -AYTWYRANSKSLLDRLLVSPEWVSHCPNIKVSILQRGLSDHCPLLV 228
>gi|242084334|ref|XP_002442592.1| hypothetical protein SORBIDRAFT_08g022600 [Sorghum bicolor]
gi|241943285|gb|EES16430.1| hypothetical protein SORBIDRAFT_08g022600 [Sorghum bicolor]
Length = 1192
Score = 36.7 bits (83), Expect = 1.00, Method: Composition-based stats.
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 17/109 (15%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTD--------DFWQKMDPDGLLIRFPQEKESTCNVIKR 68
G P++ GDFN + + +++ L+ + R
Sbjct: 326 QPRGRPWLCLGDFNLICETQDKNNNNINRAHMRKFRQALDASELLEIKLQNRKYTWSNGR 385
Query: 69 NKSSLDYFVIDRD-NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+L + I S L S LS HCPL +
Sbjct: 386 KNPTLVHLDRAFCNLDWDEIFPSA--------TLIALSSSLSDHCPLFL 426
>gi|66827829|ref|XP_647269.1| hypothetical protein DDB_G0268508 [Dictyostelium discoideum AX4]
gi|60475772|gb|EAL73707.1| hypothetical protein DDB_G0268508 [Dictyostelium discoideum AX4]
Length = 1567
Score = 36.7 bits (83), Expect = 1.00, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 22/96 (22%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN N DD Q Q + +
Sbjct: 448 IIAGDFNCIHNDNSLLDDIIQSY--TYQHHLIDQGEFKNTPTHTHGNRLDRIYTQYNRID 505
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + LS H P++
Sbjct: 506 PENIYTQVHQIPSS----------LSDHNPISTTIS 531
>gi|323963760|gb|EGB59262.1| endonuclease/Exonuclease/phosphatase [Escherichia coli M863]
Length = 266
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 176 DQIAHHSGPVIMAGDFNA---------WSRRRMNALYRFAREMSLRQVRFTDDQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 227 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 260
>gi|301167386|emb|CBW26968.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
Length = 330
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 13/140 (9%), Positives = 36/140 (25%), Gaps = 23/140 (16%)
Query: 2 LSQQG---EWLKKW--ADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIR 54
L + + ++ + +++ +P ++ GDFN + ++
Sbjct: 186 LRRAAEFKQLIETYNVLNKRYHNKVPILLLGDFNGKACKEETDIEFKTLYETTDLEDVLE 245
Query: 55 FPQEKE---------------STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
+E + + + I+ + Y +
Sbjct: 246 VIEEPKEARISIHIFDKQGVDQGHQLDYIFIPKSLHSQINAKLSGLYNYKNEEGAPYPRP 305
Query: 100 DLDTRRSK-LSTHCPLTIEY 118
R + S H P+
Sbjct: 306 TSLYERYQLPSDHFPIVCTI 325
>gi|290991312|ref|XP_002678279.1| endonuclease/exonuclease/phosphatase family protein [Naegleria
gruberi]
gi|284091891|gb|EFC45535.1| endonuclease/exonuclease/phosphatase family protein [Naegleria
gruberi]
Length = 378
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 32/151 (21%)
Query: 2 LSQQGEWLKKWADQKIK-TGIPFVIAGDFNRKIN--------------------SIGDTD 40
SQ E+++K+ Q FV+ GDFN +
Sbjct: 226 FSQILEFMEKFMRQSFNTKDNNFVMMGDFNAMYKNDYTQEFWDQIQMDRMQEQWEPAVST 285
Query: 41 DFWQKMDPDGLLIRFPQ----EKESTCNVI------KRNKSSLDYFVIDRDNKNFLIDNS 90
+ Q ++ + N +L + L S
Sbjct: 286 LMDILLGDIKDERLPIQKNLKCEKLYDTWRMCNKELQFNGRNLSSSRLKTRIDYILCSKS 345
Query: 91 F-SIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
V + D ++ + +S H P+ + F
Sbjct: 346 LSKNVLHSCIDTKSKTTSISDHNPVITHFSF 376
>gi|229149012|ref|ZP_04277257.1| Sphingomyelinase C [Bacillus cereus m1550]
gi|228634552|gb|EEK91136.1| Sphingomyelinase C [Bacillus cereus m1550]
Length = 333
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 12/136 (8%), Positives = 32/136 (23%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I +I GD N + + ++ ++
Sbjct: 198 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENKNDSEYASMFKTLNASVPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + S ++ + S+ Q
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTY 317
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDYSDHYPVEATISMK 333
>gi|21222200|ref|NP_627979.1| integral membrane protein [Streptomyces coelicolor A3(2)]
gi|10432493|emb|CAC10327.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
Length = 338
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ L+ G P V+AGDFN + + Q++ +
Sbjct: 232 REELAALRD--AAAGDRGTPTVLAGDFNASQDHAAFRRILDTGLRDAA--RLAGQDR-TP 286
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + L+ F+ DL + H L ++
Sbjct: 287 SWPARTLPVF------GTQIDHVLVSGDFAARDARFLDLA-----GTDHRALVVDLTL 333
>gi|88798528|ref|ZP_01114112.1| endonuclease/exonuclease/phosphatase family protein [Reinekea sp.
MED297]
gi|88778628|gb|EAR09819.1| endonuclease/exonuclease/phosphatase family protein [Reinekea sp.
MED297]
Length = 273
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 28/113 (24%), Gaps = 22/113 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
K+ I+ +I GD N I ++ + + +
Sbjct: 183 KYIRNIIRQYNHAIIMGDLNTDSLRILYDSPL------HDCGLKASHARATYPSWQPS-- 234
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+ I D +S H P+ IE +
Sbjct: 235 ---------KCLDQILVSQHIIIHKVGVLDFM-----MSDHLPVAIEIELPNA 273
>gi|113971368|ref|YP_735161.1| endonuclease/exonuclease/phosphatase [Shewanella sp. MR-4]
gi|113886052|gb|ABI40104.1| Endonuclease/exonuclease/phosphatase [Shewanella sp. MR-4]
Length = 870
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 28/129 (21%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------GLLIRFPQEKESTCNVI 66
P + D++ + W +D GL+ Q +
Sbjct: 704 EDPIRVLTDYDASKSERDIMTASWTTLDGKVFERQGSKIEKGYGLINLNTQAHGAGTYSY 763
Query: 67 KRNK--SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LSTH 111
N +LD+ + + L+D ++ +S+L K S H
Sbjct: 764 SYNGELGNLDHALANTSLAKRLVDIEDWHINSVESNLFEYGKKFSGELAKSENAFSASDH 823
Query: 112 CPLTIEYDF 120
P+ + +
Sbjct: 824 DPVIVALSY 832
>gi|114046447|ref|YP_736997.1| endonuclease/exonuclease/phosphatase [Shewanella sp. MR-7]
gi|113887889|gb|ABI41940.1| Endonuclease/exonuclease/phosphatase [Shewanella sp. MR-7]
Length = 870
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 28/129 (21%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------GLLIRFPQEKESTCNVI 66
P + D++ + W +D GL+ Q +
Sbjct: 704 EDPIRVLTDYDASKSERDIMTASWTTLDGKVFERQGSKIEKGYGLINLNTQAHGAGTYSY 763
Query: 67 KRNK--SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LSTH 111
N +LD+ + + L+D ++ +S+L K S H
Sbjct: 764 SYNGELGNLDHALANTSLAKRLVDIEDWHINSVESNLFEYGKKFSGELAKSENAFSASDH 823
Query: 112 CPLTIEYDF 120
P+ + +
Sbjct: 824 DPVIVALSY 832
>gi|66801347|ref|XP_629599.1| inositol 5-phosphatase [Dictyostelium discoideum AX4]
gi|60462979|gb|EAL61175.1| inositol 5-phosphatase [Dictyostelium discoideum AX4]
Length = 1379
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 35/118 (29%), Gaps = 20/118 (16%)
Query: 24 VIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQEKESTCNVI- 66
GDFN +I+ + D + M+ + + +E +
Sbjct: 773 FWLGDFNFRIDLPDEEIRRCVYDQQFPKLYNYDQLRKCMEAGRVFNGYREETIAFPPTYK 832
Query: 67 KRNKSSLDYFVIDRDNKNF---LIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
S+ + + + ++ ++ Q + S H P++ + E
Sbjct: 833 YDLNSTQYDTSQKQRSPAWTDRIVWSNKVHHDLRQLYYHRQEILASDHRPVSSYFQLE 890
>gi|262044056|ref|ZP_06017136.1| endonuclease/exonuclease/phosphatase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259038628|gb|EEW39819.1| endonuclease/exonuclease/phosphatase [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 268
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN W +M+ R +E + +R ++
Sbjct: 179 DQIAHHSGPVIMAGDFNA---------WSWPRMNALYRFAREMSLREVRFSDDQRRRAFG 229
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D ++ S H PL +E+
Sbjct: 230 RPL------------DFVFYRGLSVHDASVLVTRASDHNPLLVEFS 263
>gi|149773191|dbj|BAF64770.1| predicted extracellular nuclease [Shewanella livingstonensis]
Length = 870
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 28/131 (21%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI-------------RFPQEKESTCNV 65
P + D++ W ++ Q +
Sbjct: 702 KEDPVAVLTDYDASTTDHVIRTASWTTLNGKVYEREGSVIDKGYGLINLNTQAHGADTYS 761
Query: 66 IKRNK--SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LST 110
N +LD+ + + L+ ++ +S+L SK S
Sbjct: 762 YSYNGELGNLDHALANESLAAKLVGIDDWHINSVESNLFEYGSKYTGELVKTESPFSASD 821
Query: 111 HCPLTIEYDFE 121
H P+ I +
Sbjct: 822 HDPVIIALSYP 832
>gi|27085407|gb|AAN85439.1| inositol 5-phosphatase 3 [Dictyostelium discoideum]
Length = 1379
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 35/118 (29%), Gaps = 20/118 (16%)
Query: 24 VIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQEKESTCNVI- 66
GDFN +I+ + D + M+ + + +E +
Sbjct: 773 FWLGDFNFRIDLPDEEIRRCVYDQQFPKLYNYDQLRKCMEAGRVFNGYREETIAFPPTYK 832
Query: 67 KRNKSSLDYFVIDRDNKNF---LIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
S+ + + + ++ ++ Q + S H P++ + E
Sbjct: 833 YDLNSTQYDTSQKQRSPAWTDRIVWSNKVHHDLRQLYYHRQEILASDHRPVSSYFQLE 890
>gi|114564870|ref|YP_752384.1| endonuclease/exonuclease/phosphatase [Shewanella frigidimarina
NCIMB 400]
gi|114336163|gb|ABI73545.1| Endonuclease/exonuclease/phosphatase [Shewanella frigidimarina
NCIMB 400]
Length = 870
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 16/131 (12%), Positives = 33/131 (25%), Gaps = 28/131 (21%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI-------------RFPQEKESTCNV 65
P + D++ W ++ Q +
Sbjct: 702 KEDPVAVLTDYDASTTDHVIRTASWTTLNGKVYEREGSVIDKGYGLINLNTQAHGADTYS 761
Query: 66 IKRNK--SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------------LST 110
N +LD+ + + L+ ++ +S+L SK S
Sbjct: 762 YSYNGELGNLDHALANESLAAKLVGIDDWHINSVESNLFEYGSKYTGELVKTESPFSASD 821
Query: 111 HCPLTIEYDFE 121
H P+ I +
Sbjct: 822 HDPVIIALSYP 832
>gi|255010722|ref|ZP_05282848.1| hypothetical protein Bfra3_16398 [Bacteroides fragilis 3_1_12]
Length = 344
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 19/146 (13%), Positives = 35/146 (23%), Gaps = 33/146 (22%)
Query: 6 GEWLKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ LK AD + + +I GDFN + + P+
Sbjct: 194 AQKLKNAADSLMCVRRSAKLIIMGDFNDYPTDKSVKQVL-KALSPEENPDHKQLYHLLAR 252
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS-----------------YDQSDLDTRRS 106
RN S Y + ++ + S D
Sbjct: 253 KAKNRNFGSYKYQGEWGLLDHLIVSGTLLDTSGTLFTEEKKASVLRLPFLLIKDEKYGGM 312
Query: 107 KL-------------STHCPLTIEYD 119
+ S H P+ +++
Sbjct: 313 QPFRTYIGMKYQGGYSDHLPVYTDFE 338
>gi|160890824|ref|ZP_02071827.1| hypothetical protein BACUNI_03269 [Bacteroides uniformis ATCC 8492]
gi|317479743|ref|ZP_07938865.1| endonuclease/Exonuclease/phosphatase [Bacteroides sp. 4_1_36]
gi|156859823|gb|EDO53254.1| hypothetical protein BACUNI_03269 [Bacteroides uniformis ATCC 8492]
gi|316904113|gb|EFV25945.1| endonuclease/Exonuclease/phosphatase [Bacteroides sp. 4_1_36]
Length = 249
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 19/104 (18%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
P +AGD N S+ +++ + S R +
Sbjct: 157 KALQNVDKPIFMAGDMNSAPASVP-------QLELAKHFATL-NDTTSYTFPADRPNRCI 208
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS-THCPLTI 116
DY S + +D +S H P+ +
Sbjct: 209 DYI----------YGYSKNGYRFDVQYRKVIEDTISSDHRPVQV 242
>gi|27365227|ref|NP_760755.1| hypothetical protein VV1_1880 [Vibrio vulnificus CMCP6]
gi|39932529|sp|Q8DBE1|Y1880_VIBVU RecName: Full=UPF0294 protein VV1_1880
gi|27361374|gb|AAO10282.1| hypothetical protein VV1_1880 [Vibrio vulnificus CMCP6]
Length = 284
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 12/115 (10%), Positives = 32/115 (27%), Gaps = 20/115 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ + + P ++AGDFN + + + + + F ++ +
Sbjct: 187 QQVNDLIAALKEHPGPAIVAGDFN-TWSEKRLQAVTERLENAGLIEVVFSPDQRT----- 240
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
L + + + ++ S H PL + +
Sbjct: 241 --------------RFITGLPLDHVFYKGLEVQKAEAPQTDASDHNPLLVSFTLP 281
>gi|320170015|gb|EFW46914.1| hypothetical protein CAOG_04872 [Capsaspora owczarzaki ATCC 30864]
Length = 680
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 18/147 (12%), Positives = 33/147 (22%), Gaps = 30/147 (20%)
Query: 3 SQQGEWLK--KWADQKIKTGI-PFVIAGDFNRKINS--------------------IGDT 39
++ L+ + + + P + GD N S
Sbjct: 530 ARSVAALRVYDFLRKLARDSPRPQLFMGDLNATPLSTAMQFLNGNVTLRNIRVGDMRDVW 589
Query: 40 -----DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF-SI 93
+ + D L P + + + L + + S
Sbjct: 590 LALRPEPSYDPRTDDKLPHAPPSDHPLYGMTFNTHANFLSKRIDYMYLRQPAGSPSVLRP 649
Query: 94 VSYDQSDL-DTRRSKLSTHCPLTIEYD 119
S D S H L E+D
Sbjct: 650 RSIDVIGQHPRDGQMPSDHVGLVAEFD 676
>gi|296411919|ref|XP_002835676.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629464|emb|CAZ79833.1| unnamed protein product [Tuber melanosporum]
Length = 1179
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 28/121 (23%), Gaps = 19/121 (15%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFW------QKMDPDGLLIRFPQEKESTCNVIKRNK 70
I + GDFN +I + Q + + L + +
Sbjct: 783 IDDHDTVIWLGDFNYRIGLPDEKVRKLVGLGDLQTLYDNDQLNLQMIAGLAFPYFSEARL 842
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------------STHCPLTIEY 118
+ + D + + + R L S H P+ +
Sbjct: 843 TFDPTYKYDIGTDRYDTSEKAR-IPAWCDRVLRRGKNLRQLSYGAVPLRFSDHRPVYATF 901
Query: 119 D 119
Sbjct: 902 Q 902
>gi|293378601|ref|ZP_06624761.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium PC4.1]
gi|292642732|gb|EFF60882.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium PC4.1]
Length = 276
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 2/102 (1%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+T P GDFN +S G + + ++ ++ V K+
Sbjct: 175 ETRAPLFFLGDFNNPADSEGYHIVKESGLLLQDSYVIANEKGKAAT-VEKKIDGWEQNT- 232
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + Y + +S H IE D
Sbjct: 233 EKLRIDFIFVPEGVQVKKYQRIFDGIDSPIISDHYGAEIEID 274
>gi|163741385|ref|ZP_02148776.1| endonuclease/exonuclease/phosphatase family protein [Phaeobacter
gallaeciensis 2.10]
gi|161385119|gb|EDQ09497.1| endonuclease/exonuclease/phosphatase family protein [Phaeobacter
gallaeciensis 2.10]
Length = 241
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 29/115 (25%), Gaps = 22/115 (19%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + + + +P V AGDFN +D +RF + S
Sbjct: 143 EQVHHLAEVIAR--EPALPTVWAGDFNDWSRQP--------VLDHLAPELRFVPPRPSFP 192
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ +V S H P+ +
Sbjct: 193 -----------ALRPMGALDRIAVSAGLEVVDSGV-YRARPAHIASDHLPVWADL 235
>gi|254286453|ref|ZP_04961410.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|150423402|gb|EDN15346.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
Length = 281
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 20/114 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L D+ P ++AGDFN + + L QE V
Sbjct: 186 QQLTALLDELRDFTGPVILAGDFNS-------WSEARMALLSTQLASVGLQE------VR 232
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + F SD S H PL + +
Sbjct: 233 FSPDNRTTFINGLPLDHVFYRGLQLEKAEAPISD-------ASDHNPLLVRFRL 279
>gi|293371500|ref|ZP_06617920.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CMC 3f]
gi|292633537|gb|EFF52100.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CMC 3f]
Length = 297
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 28/119 (23%), Gaps = 20/119 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-TDDFWQKMDPDGLLIRFPQEKES 61
+ L K K P GDFN ++ T + D Q
Sbjct: 196 KHACQMLVDAVSDKAKDNTPAFCTGDFNATPDAPEIATTICQSGILKDAYREAAVQHGAL 255
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP--LTIEY 118
+ ++ + + S LS H P + +E
Sbjct: 256 FTFPS-----------KKTRIDFIFVKHATVLSTRTIV------SSLSDHYPMVIVVEI 297
>gi|167535651|ref|XP_001749499.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772127|gb|EDQ85784.1| predicted protein [Monosiga brevicollis MX1]
Length = 989
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 19/141 (13%), Positives = 36/141 (25%), Gaps = 27/141 (19%)
Query: 3 SQQGEWLKKWADQ-----KIKTGI---PFVIAGDFNRKINSIGD----------TDDFWQ 44
+ E Q ++ G+ V+ GDFN D
Sbjct: 742 KRSAEA--DRIKQMRNVVRLAEGMGTTAVVLVGDFNDGDEDPSVAQSLQCVRKLEDPVAA 799
Query: 45 KM-----DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
K LL + + +D+ ++ + + SY
Sbjct: 800 KAMVAAESAQLLLHSVYEGSPDVTLCKPGLMARIDHVLVTSNCLVEARHAPQATESYGTL 859
Query: 100 DLDT--RRSKLSTHCPLTIEY 118
R S H P+ +++
Sbjct: 860 SKHRLPSRRNGSDHLPVGMDF 880
>gi|163760748|ref|ZP_02167828.1| Endonuclease/exonuclease/phosphatase family protein [Hoeflea
phototrophica DFL-43]
gi|162282070|gb|EDQ32361.1| Endonuclease/exonuclease/phosphatase family protein [Hoeflea
phototrophica DFL-43]
Length = 368
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 20/157 (12%), Positives = 35/157 (22%), Gaps = 41/157 (26%)
Query: 5 QGEWLKKWADQKIKT---GIPFVIAGDFNRKIN---------------SIGDTDDFWQKM 46
+ ++K + G +VIAGDFN D + +
Sbjct: 211 EARAVRKLISDRFGADGGGKRYVIAGDFNDYSEKLVITGDRRHGYHFTPEQAEDGAVRVL 270
Query: 47 DPDGLLIRFPQEKESTCNV--IKRNKSSLDY--------------FVIDRDNKNFLIDNS 90
DG + + + +
Sbjct: 271 TADGFAENVVTRRPEMDRWTLYHTRGPQERHLCQLDYLLASPALTRSNRDRLPDIIRAGQ 330
Query: 91 FSIVSYDQ-------SDLDTRRSKLSTHCPLTIEYDF 120
+ Q R K S HCP+ + +D
Sbjct: 331 PWRTLFPQGQEVERYPRTGWDRPKASDHCPVAMTFDM 367
>gi|78187058|ref|YP_375101.1| hypothetical protein Plut_1196 [Chlorobium luteolum DSM 273]
gi|78166960|gb|ABB24058.1| conserved hypothetical protein [Chlorobium luteolum DSM 273]
Length = 348
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 8/76 (10%), Positives = 13/76 (17%), Gaps = 1/76 (1%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
++ GDFN ++ C S Y
Sbjct: 214 LQNPDADIIVMGDFNDSPQDRSVRRTLRGTLNRLQAQR-AKDGTLYNCWGGSSQPGSYSY 272
Query: 76 FVIDRDNKNFLIDNSF 91
L+
Sbjct: 273 RGRWERIDQILVSKGM 288
>gi|332140686|ref|YP_004426424.1| hypothetical protein MADE_1006420 [Alteromonas macleodii str. 'Deep
ecotype']
gi|327550708|gb|AEA97426.1| hypothetical protein MADE_1006420 [Alteromonas macleodii str. 'Deep
ecotype']
Length = 404
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 31/119 (26%), Gaps = 11/119 (9%)
Query: 17 IKTGIPFVIAGDFNRK----------INSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
++T FV+ GDFN I + + + P + +
Sbjct: 286 LETNTRFVLLGDFNAADIGNKHREGVIEQLTEHPLVNNDIIPTSAGGAGASGAKFSNRFT 345
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS-THCPLTIEYDFEKGN 124
+ DY + R + F R S H + I + N
Sbjct: 346 AYWGARADYVLPSRFGFDVNDAGVFWPAKTSDLYRLVRDRAASSDHRLVWISLSLTEDN 404
>gi|66813130|ref|XP_640744.1| hypothetical protein DDB_G0281357 [Dictyostelium discoideum AX4]
gi|60468763|gb|EAL66764.1| hypothetical protein DDB_G0281357 [Dictyostelium discoideum AX4]
Length = 503
Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 21/96 (21%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN N + Q + +
Sbjct: 214 IIAGDFNCIHNDNSL--LYDIIQSYTYQHRLIDQGEFKNTPTHTHGNRLDRIYTQYNRID 271
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + + LS H P++
Sbjct: 272 PENIYSQVHQIPSS----------LSDHNPVSTTIS 297
>gi|229513881|ref|ZP_04403343.1| hypothetical protein VCB_001526 [Vibrio cholerae TMA 21]
gi|229349062|gb|EEO14019.1| hypothetical protein VCB_001526 [Vibrio cholerae TMA 21]
Length = 281
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 20/114 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L D+ P ++AGDFN + + L QE V
Sbjct: 186 QQLTALLDELRDFTGPVIVAGDFNS-------WSEARMALLSTQLASVGLQE------VR 232
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + F SD S H PL + +
Sbjct: 233 FSPDNRTTFINGLPLDHVFYRGLQLEKAEAPISD-------ASDHNPLLVRFRL 279
>gi|254481760|ref|ZP_05095003.1| endonuclease/exonuclease/phosphatase family protein [marine gamma
proteobacterium HTCC2148]
gi|214037889|gb|EEB78553.1| endonuclease/exonuclease/phosphatase family protein [marine gamma
proteobacterium HTCC2148]
Length = 255
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 14/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + L + DQ + P +IAGDFN + + + + +
Sbjct: 151 REQLQTLTERIDQHVPRDEPMIIAGDFND-WRRRAENHLHDDLGLAELFVSLEGRHARTF 209
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
YF + + N LS H L +
Sbjct: 210 PVWAPLLPVDRVYFRGLKPISCRRLANGHWRD-------------LSDHAALFGVFQL 254
>gi|144900918|emb|CAM77782.1| predicted metal-dependent hydrolase (COG3568) [Magnetospirillum
gryphiswaldense MSR-1]
Length = 237
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 27/119 (22%), Gaps = 17/119 (14%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +Q A Q K +I GDFN I S W+ + +
Sbjct: 133 LRQRQLAA----AQQVTKRPGTALIGGDFNAPIESFALNATGWRDCRSE----LGQPPQS 184
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-STHCPLTIEY 118
+ D L S HC + ++
Sbjct: 185 TLT--------GQPDGPCIDHLLWAGRGRPPKTWRVDLDRLTRDGQPAISDHCAVVVDL 235
>gi|66827901|ref|XP_647305.1| hypothetical protein DDB_G0268524 [Dictyostelium discoideum AX4]
gi|60475780|gb|EAL73715.1| hypothetical protein DDB_G0268524 [Dictyostelium discoideum AX4]
Length = 1607
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 22/96 (22%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN N DD Q Q + +
Sbjct: 488 IIAGDFNCIHNDNSLLDDIIQSY--TYQHHLIDQGEFKNTPTHTHGNRLDRIYTQYNRID 545
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + LS H P++
Sbjct: 546 PENIYTQVHQIPSS----------LSDHNPISTTIS 571
>gi|321448045|gb|EFX61292.1| hypothetical protein DAPPUDRAFT_122319 [Daphnia pulex]
Length = 675
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 7/108 (6%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN-KS 71
+ + P+++ GDFN + + + C + N +
Sbjct: 126 IEAMLDRSNPYLLGGDFN---GHHPLWESNATVNKAGKSVYEALINDQDACLITPPNLGT 182
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
LD + I + S S H P+ I +
Sbjct: 183 RLDPVSGKASTIDLTITAASIATSAKI---TLGSYMGSDHLPIIITLN 227
>gi|254703373|ref|ZP_05165201.1| Endonuclease/exonuclease/phosphatase [Brucella suis bv. 3 str. 686]
Length = 125
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + + +P ++ GD N + + +
Sbjct: 7 EQQAETILSALQE--ADTLPTLLIGDLN-------EWRIGKRSSLSALMPTFNHVATAVP 57
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L I S + + R S H P+ D +
Sbjct: 58 SFPSR---------FPVLALDRVLGAPDNLITSVEVHNTPLARL-ASDHLPIKAHLDLKT 107
Query: 123 G 123
Sbjct: 108 A 108
>gi|147803018|emb|CAN63923.1| hypothetical protein VITISV_004023 [Vitis vinifera]
Length = 1081
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 35/121 (28%), Gaps = 20/121 (16%)
Query: 10 KKWADQKIKT-----GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFP 56
++W +++ P+ + GDFN + + ++ D L+
Sbjct: 522 REWLWEEVGAIRGIWEGPWCLGGDFNITLAQGERNRQGRISSAMRRFAEVVDDLGLVDLQ 581
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + + FL+ + S +S H P+ +
Sbjct: 582 LQGGAFTWT------GGLNNMSKARLDRFLVSPCWLDQFSRVS-QRRLPRPISDHFPVLL 634
Query: 117 E 117
E
Sbjct: 635 E 635
>gi|66804765|ref|XP_636115.1| hypothetical protein DDB_G0289805 [Dictyostelium discoideum AX4]
gi|60464467|gb|EAL62614.1| hypothetical protein DDB_G0289805 [Dictyostelium discoideum AX4]
Length = 1626
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 22/96 (22%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN N DD Q Q + +
Sbjct: 506 IIAGDFNCIHNDNSLLDDIIQSY--TYQHHLIDQGEFKNTPTHTHGNRLDRIYTQYNRID 563
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + LS H P++
Sbjct: 564 PENIYTQVHQIPSS----------LSDHNPISTTIS 589
>gi|313885686|ref|ZP_07819435.1| exodeoxyribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
gi|312619051|gb|EFR30491.1| exodeoxyribonuclease III [Eremococcus coleocola ACS-139-V-Col8]
Length = 275
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 19/142 (13%), Positives = 37/142 (26%), Gaps = 27/142 (19%)
Query: 2 LSQQGE---WLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDD--------------- 41
L + + W +++A + + GDFN + I
Sbjct: 136 LKRLADRQIWDQQYAAYLASLDQDKIVLATGDFNVAHHEIDLAHPENNHHSAGFTDEERA 195
Query: 42 ----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
D + +R K+S +L+ N
Sbjct: 196 GFTQLLAHGFTDTFRHLHGDVTGAYTWWAQRVKTSKIN-NSGWRIDYWLVSNRAVDRVIQ 254
Query: 98 QSDLDTRRSKLSTHCPLTIEYD 119
+D+ + H P+ +E D
Sbjct: 255 SEIIDSGTRQ--DHTPILLEID 274
>gi|294674138|ref|YP_003574754.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
ruminicola 23]
gi|294472322|gb|ADE81711.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
ruminicola 23]
Length = 311
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 18/131 (13%), Positives = 32/131 (24%), Gaps = 17/131 (12%)
Query: 6 GEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ L + D ++AGDFN S + +
Sbjct: 182 ADRLCQSIDSIRAISPDAKLMVAGDFNDGALSPSLLQYEQHGLVNLTKHAK-GANGVRGT 240
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKL-------------S 109
K S+D+ + N + + + D + S
Sbjct: 241 YRYKGEWESIDHILGSSSINNKVDTAFIHAPKFLLEEDARYGGYRPRRTYIGPRYQGGFS 300
Query: 110 THCPLTIEYDF 120
H PL + F
Sbjct: 301 DHLPLVVRLIF 311
>gi|288904371|ref|YP_003429592.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
gallolyticus UCN34]
gi|306830403|ref|ZP_07463573.1| RgfB protein [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325977367|ref|YP_004287083.1| endonuclease/exonuclease/phosphatase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|288731096|emb|CBI12642.1| putative endonuclease/exonuclease/phosphatase family protein
[Streptococcus gallolyticus UCN34]
gi|304427428|gb|EFM30530.1| RgfB protein [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325177295|emb|CBZ47339.1| Endonuclease/exonuclease/phosphatase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
Length = 271
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 2/106 (1%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ P V+ GDFN D + ++ + +I+
Sbjct: 168 ALLDYPKPLVLMGDFN-NPTDTAGYDMILNSPLDLQDSHKVAKKVQGDHTIIEDIDGWEG 226
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ I+S + +S H L +E ++
Sbjct: 227 NK-QSLKVDHVFTSKDIDILSSTVTFDGGEAPIVSDHFGLAVELNY 271
>gi|255513505|gb|EET89771.1| Endonuclease/exonuclease/phosphatase [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 256
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 12/100 (12%), Positives = 29/100 (29%), Gaps = 17/100 (17%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
G ++ GDFN I++ + ++ + R
Sbjct: 174 GERKILCGDFNLDISTESVHMLEQETVNLVKEFKINSTRSALAPSSKGRF---------- 223
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ I ++ + +S H PL ++++
Sbjct: 224 --ADYIFASDKIKINKFNVLNDV-----VSDHLPLYVDFE 256
>gi|260906117|ref|ZP_05914439.1| Endonuclease/exonuclease/phosphatase [Brevibacterium linens BL2]
Length = 313
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 12/115 (10%), Positives = 27/115 (23%), Gaps = 20/115 (17%)
Query: 8 WLKKWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+++ A + + ++AGDFN + + P R
Sbjct: 218 AIRRLATEVETDEAEHVIVAGDFNTATTDTN-----FSTLSPPLEDTRVEAGGGFGFTW- 271
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ +D + + S H + D +
Sbjct: 272 -------PARFPVTRLDH------VLYRGFDATSDEVLDRGSSDHRAVVAGLDLK 313
>gi|317401442|gb|EFV82074.1| hypothetical protein HMPREF0005_00913 [Achromobacter xylosoxidans
C54]
Length = 288
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 38/153 (24%), Gaps = 35/153 (22%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNR---------------------KINSIGDTDD 41
S+Q L + + + G P +IAGDFN S G
Sbjct: 137 SRQILALTERIRRMVPDGEPILIAGDFNDWGDRLAPLFVQQLGLYEVFSHAPRSHGGELP 196
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRN-------------KSSLDYFVIDRDNKNFLID 88
+ + + N V + +
Sbjct: 197 RLRDSVKRLSNALRGLPNSGVSVLERTNQLGMDGSSRLLLPPPRTFPAVFPWFRLDRIYQ 256
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
F++ S ++LS H PL E +
Sbjct: 257 RGFAVRSARVLRG-REWARLSDHSPLLAELELP 288
>gi|171694151|ref|XP_001912000.1| hypothetical protein [Podospora anserina S mat+]
gi|170947024|emb|CAP73828.1| unnamed protein product [Podospora anserina S mat+]
Length = 1167
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 10/84 (11%), Positives = 21/84 (25%), Gaps = 4/84 (4%)
Query: 39 TDDFWQKMDPDGLLIRFPQEKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + L I F + +
Sbjct: 1055 RNPGFRLRAFEELPITFAPTYKYDVGTDNYDTSEKRRSPAWCDRLLFRC---GAGRGRIE 1111
Query: 98 QSDLDTRRSKLSTHCPLTIEYDFE 121
Q D ++S H P++ + FE
Sbjct: 1112 QLDYRRHEVRVSDHRPVSGRFRFE 1135
>gi|261754001|ref|ZP_05997710.1| endonuclease/exonuclease/phosphatase [Brucella suis bv. 3 str. 686]
gi|261743754|gb|EEY31680.1| endonuclease/exonuclease/phosphatase [Brucella suis bv. 3 str. 686]
Length = 124
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 28/121 (23%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + + +P ++ GD N + + +
Sbjct: 6 EQQAETILSALQE--ADTLPTLLIGDLN-------EWRIGKRSSLSALMPTFNHVATAVP 56
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L I S + + R S H P+ D +
Sbjct: 57 SFPSR---------FPVLALDRVLGAPDNLITSVEVHNTPLARL-ASDHLPIKAHLDLKT 106
Query: 123 G 123
Sbjct: 107 A 107
>gi|151946376|gb|EDN64598.1| AP endonuclease [Saccharomyces cerevisiae YJM789]
Length = 520
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 3/91 (3%)
Query: 29 FNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID 88
FN+ + D + + D + + + + +L L+
Sbjct: 275 FNQILADSLLPDASKRGILIDTTRLIQTRNRLKM-YTVWNMLKNLRPSNYGSRIDFILVS 333
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L S HCP+ + D
Sbjct: 334 LKLERCIKAADILP--DILGSDHCPVYSDLD 362
>gi|111222126|ref|YP_712920.1| hypothetical protein FRAAL2705 [Frankia alni ACN14a]
gi|111149658|emb|CAJ61351.1| hypothetical protein FRAAL2705 [Frankia alni ACN14a]
Length = 235
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 26/117 (22%), Gaps = 21/117 (17%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------GLLIRFPQEKESTCNV 65
+P V+ GD N F+ + D + V
Sbjct: 107 SEHLPTVLLGDLNILEPDHSPRYPFFAPFEYDFYRALLDEHCLVDAFRVLHPTDAAYSWV 166
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD-LDTRRSKLSTHCPLTIEYDFE 121
+ + + + R +KLS H LT+
Sbjct: 167 GR--------SGDGYRYDHAFCSAALRDRVEACDYLDEPRLTKLSDHSALTLTLTIP 215
>gi|51013817|gb|AAT93202.1| YBL019W [Saccharomyces cerevisiae]
Length = 520
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 3/91 (3%)
Query: 29 FNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID 88
FN+ + D + + D + + + + +L L+
Sbjct: 275 FNQILADSLLPDASKRGILIDTTRLIQTRNRLKM-YTVWNMLKNLRPSNYGSRIDFILVS 333
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L S HCP+ + D
Sbjct: 334 LKLERCIKAADILP--DILGSDHCPVYSDLD 362
>gi|6319452|ref|NP_009534.1| Apn2p [Saccharomyces cerevisiae S288c]
gi|586406|sp|P38207|APN2_YEAST RecName: Full=DNA-(apurinic or apyrimidinic site) lyase 2; AltName:
Full=AP endonuclease 2; AltName:
Full=Apurinic-apyrimidinic endonuclease 2
gi|536013|emb|CAA84838.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285810316|tpg|DAA07101.1| TPA: Apn2p [Saccharomyces cerevisiae S288c]
Length = 520
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 3/91 (3%)
Query: 29 FNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID 88
FN+ + D + + D + + + + +L L+
Sbjct: 275 FNQILADSLLPDASKRGILIDTTRLIQTRNRLKM-YTVWNMLKNLRPSNYGSRIDFILVS 333
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L S HCP+ + D
Sbjct: 334 LKLERCIKAADILP--DILGSDHCPVYSDLD 362
>gi|89074584|ref|ZP_01161056.1| hypothetical protein SKA34_11975 [Photobacterium sp. SKA34]
gi|89049688|gb|EAR55247.1| hypothetical protein SKA34_11975 [Photobacterium sp. SKA34]
Length = 379
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 12/128 (9%), Positives = 31/128 (24%), Gaps = 25/128 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIG----------DTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+K F++ GD N I+ D + + + +
Sbjct: 249 LKPDDAFIVMGDLNADIDDGDGYKAAIKQLLKHDKINKTVSRGKYTPKSEGGRHYYSRQK 308
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ------------SDLDTRRSKL---STH 111
+ + + + L + ++ R K S H
Sbjct: 309 RTGRKNEWTHLAGLRLDYVLPSENLEVIKTGVFWPDKSDALRELILDCKGREKPVAGSDH 368
Query: 112 CPLTIEYD 119
+ ++ +
Sbjct: 369 RMVWVDIN 376
>gi|260866352|ref|YP_003232754.1| hypothetical protein ECO111_0206 [Escherichia coli O111:H- str.
11128]
gi|257762708|dbj|BAI34203.1| conserved predicted protein [Escherichia coli O111:H- str. 11128]
Length = 266
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 176 DQIAHHSGPVIMAGDFNA---------WSRRRMNALYRFAREMSLRQVRFTDDQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 227 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 260
>gi|256786710|ref|ZP_05525141.1| integral membrane protein [Streptomyces lividans TK24]
gi|289770605|ref|ZP_06529983.1| integral membrane protein [Streptomyces lividans TK24]
gi|289700804|gb|EFD68233.1| integral membrane protein [Streptomyces lividans TK24]
Length = 338
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 16/118 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ L+ G P V+AGDFN + + Q++ +
Sbjct: 232 REELAALRD--AAAGDRGTPTVLAGDFNASQDHAAFRRILDTGLRDAA--RLAGQDR-TP 286
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + L+ F+ DL + H L ++
Sbjct: 287 SWPARTLPVF------GTQIDHVLVSGDFAARDARFLDLA-----GTDHRALVVDLTL 333
>gi|213407510|ref|XP_002174526.1| inositol-1,4,5-trisphosphate 5-phosphatase [Schizosaccharomyces
japonicus yFS275]
gi|212002573|gb|EEB08233.1| inositol-1,4,5-trisphosphate 5-phosphatase [Schizosaccharomyces
japonicus yFS275]
Length = 1156
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 29/106 (27%), Gaps = 3/106 (2%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ + F + G+ + + S +F + + P+ +S
Sbjct: 979 LNSEPNETNQFKLKGNLDALLESDQLHLEFKRNANFRLRTFVEPKLTFPPTY-KYDLRSD 1037
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQS--DLDTRRSKLSTHCPLTI 116
+ + + Y S + K S H P++
Sbjct: 1038 TYDTSEKKRVPAWCDRVCYRGNEYWISASNYRRYEIKTSDHRPISA 1083
>gi|87116463|dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 12/110 (10%), Positives = 34/110 (30%), Gaps = 5/110 (4%)
Query: 11 KWADQKIKT-GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE----KESTCNV 65
++ Q + P+++ GD N S + + +
Sbjct: 651 EYCKQLANSIQSPWMVVGDLNDIATSDEQWGSSSLNYTSLQNFVDAYSDCGLLDPGSSGP 710
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ V+ R + ++ N + +++ ++ + S H P+
Sbjct: 711 NFTWCRFIGNRVVQRRRLDRVLWNVSAQLTFPEAKVSVLPRLCSDHNPIL 760
>gi|302875724|ref|YP_003844357.1| Endonuclease/exonuclease/phosphatase [Clostridium cellulovorans
743B]
gi|307689155|ref|ZP_07631601.1| Endonuclease/exonuclease/phosphatase [Clostridium cellulovorans
743B]
gi|302578581|gb|ADL52593.1| Endonuclease/exonuclease/phosphatase [Clostridium cellulovorans
743B]
Length = 263
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 37/119 (31%), Gaps = 8/119 (6%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI-RFPQEKE 60
QQ + L +++K + GDFN + + + + GL +++
Sbjct: 151 FKQQADRLL----EQVKENELTFLMGDFN---SDALKRNTGYDYLMSKGLYDTYNMAKEK 203
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + L + + S +S H L +E +
Sbjct: 204 DLGITVSGKIAGWEKNDEQKRIDLILTNTPVEVKYSRVIFNGENESIVSDHYGLEVEIE 262
>gi|291302070|ref|YP_003513348.1| endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
gi|290571290|gb|ADD44255.1| Endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
Length = 268
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 12/117 (10%), Positives = 25/117 (21%), Gaps = 26/117 (22%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ + +WA + P + GDFN + + G +
Sbjct: 177 EREAQ--GRWALDYLSHSGPLLFTGDFNERPENRIHAWALADGFADTGGEVAPDPTHGD- 233
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S H P+ I+ +
Sbjct: 234 -----------------ARIDFVYARGVTATAGLVPDTD------ASDHRPVVIDLE 267
>gi|218507835|ref|ZP_03505713.1| putative endonuclease/exonuclease/phosphatase family protein
[Rhizobium etli Brasil 5]
Length = 149
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 7/85 (8%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY----DQS 99
Q +D L +++ C + S + + + +
Sbjct: 65 QPLDRWTLYHARGPQEQHLCQLDYIWLSPALAAHNSGRLPEIIRNGQPYRTVFPPGQEVE 124
Query: 100 DLDTRRS---KLSTHCPLTIEYDFE 121
K S HCP+ + D
Sbjct: 125 RYPRTGWDRPKASDHCPVVMTLDLP 149
>gi|189461973|ref|ZP_03010758.1| hypothetical protein BACCOP_02640 [Bacteroides coprocola DSM 17136]
gi|189431367|gb|EDV00352.1| hypothetical protein BACCOP_02640 [Bacteroides coprocola DSM 17136]
Length = 345
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 35/144 (24%), Gaps = 35/144 (24%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q LK Q++ + I VI GD N + + + ++
Sbjct: 204 QVRALKDSL-QRLDSKIKIVIMGDMNDDPMDKS----MAEALGAKREMKDVKKKDLYNPW 258
Query: 65 VI----------KRNKSSLDYF--------VIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
R K +L ++ F Q+D +
Sbjct: 259 WNTLAGGDGTLKYRGKWNLFDQIVFTGNFLNKRHKKLSYFTHEIFKRDYLMQADGKYKGY 318
Query: 107 KL------------STHCPLTIEY 118
L S H P + +
Sbjct: 319 PLRTQAGGRWMNGYSDHLPTVVYF 342
>gi|156551960|ref|XP_001602349.1| PREDICTED: similar to neutral Sphingomyelinase, putative [Nasonia
vitripennis]
Length = 404
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 15/130 (11%), Positives = 27/130 (20%), Gaps = 14/130 (10%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC- 63
Q ++ ++ GD N + + D S C
Sbjct: 153 QAFDTAQFIRMTRGGADAVILGGDLNTEPQDLAFRIICGIAELSDACSKDANSLGTSECA 212
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL----------STHCP 113
+ + + L S Y + S H
Sbjct: 213 KNSYTDLRVARKIPQGKRIDHILYLGS---KRYKVDVSEFSHPFPTRVPDKTFSYSDHEA 269
Query: 114 LTIEYDFEKG 123
+ + F KG
Sbjct: 270 VMASFKFTKG 279
>gi|37680719|ref|NP_935328.1| hypothetical protein VV2535 [Vibrio vulnificus YJ016]
gi|39932472|sp|Q7MII1|Y2535_VIBVY RecName: Full=UPF0294 protein VV2535
gi|37199468|dbj|BAC95299.1| conserved hypothetical protein [Vibrio vulnificus YJ016]
Length = 284
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 12/115 (10%), Positives = 32/115 (27%), Gaps = 20/115 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ + + P ++AGDFN + + + + + F ++ +
Sbjct: 187 QQVNDLIAALKEHPGPAIVAGDFN-TWSEKRLQAVTERLENAGLIEVVFSPDQRT----- 240
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
L + + + ++ S H PL + +
Sbjct: 241 --------------RFITGLPLDHVFYKGLEVQKAEAPQTDASDHNPLLVSFTLP 281
>gi|300790524|ref|YP_003770815.1| endonuclease/exonuclease/phosphatase [Amycolatopsis mediterranei
U32]
gi|299800038|gb|ADJ50413.1| endonuclease/exonuclease/phosphatase [Amycolatopsis mediterranei
U32]
Length = 338
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 13/109 (11%), Positives = 22/109 (20%), Gaps = 17/109 (15%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
Q ++AGDFN ++ + E
Sbjct: 247 LSQAAGEHGLRILAGDFNATLDHAAYRTVLARGYRDAAEER---GEGLDPTWPSS----- 298
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + +DN D S H + E
Sbjct: 299 ----LPVVTIDHVAVDN-----RAAVLDYRVFDVAGSDHRAVFAEVRLP 338
>gi|257888933|ref|ZP_05668586.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium
1,141,733]
gi|257824989|gb|EEV51919.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium
1,141,733]
Length = 273
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 2/102 (1%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+T P GDFN +S G + + ++ ++ V K+
Sbjct: 172 ETRAPLFFLGDFNNPADSEGYHIVKESGLLLQDSYVIANEKGKAAT-VEKKIDGWEQNT- 229
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + Y + +S H IE D
Sbjct: 230 EKLRIDFIFVPEGVQVKKYQRIFDGIDSPIISDHYGAEIEID 271
>gi|238923041|ref|YP_002936554.1| hypothetical protein EUBREC_0631 [Eubacterium rectale ATCC 33656]
gi|238874713|gb|ACR74420.1| Hypothetical protein EUBREC_0631 [Eubacterium rectale ATCC 33656]
Length = 263
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 18/142 (12%), Positives = 36/142 (25%), Gaps = 34/142 (23%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTD-------DFWQKMDPDGLLIRFPQEKEST- 62
K Q+++T ++ GD N Q +D + + ++
Sbjct: 122 KHIKQRLQT-EHVIVIGDINESPYEKACLSAKGFHALPALQILDKGSRTVYGKEYEKMYN 180
Query: 63 CNVI-----------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ------------- 98
S Y +I S + +
Sbjct: 181 PMWNLFGDFKYPPGTYYRVESKLYNPCWFMLDQVIISQSMIPLMVKEQLKIITKCGKGVL 240
Query: 99 -SDLDTRRSKLSTHCPLTIEYD 119
+D S +S H P+ E++
Sbjct: 241 YTDNRYPNSNISDHFPIMCEFN 262
>gi|242770047|ref|XP_002341898.1| transcription factor, putative [Talaromyces stipitatus ATCC 10500]
gi|218725094|gb|EED24511.1| transcription factor, putative [Talaromyces stipitatus ATCC 10500]
Length = 753
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 23/125 (18%), Gaps = 25/125 (20%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL----------------------IRFP 56
IP +I GDFN +
Sbjct: 609 DQIPLLICGDFNSAPGEAAYNLLAHGGLTEAHPDLEKRLYGNLSRVGMTHPFKLKSAYSA 668
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCPL 114
+ S N S LDY + Y S H L
Sbjct: 669 IGELSFTNYTPDFNSILDYIWYSSTALHVTGLLGEVDKEYLQRVPGFPNY-HFPSDHLAL 727
Query: 115 TIEYD 119
E+
Sbjct: 728 LAEFS 732
>gi|218191592|gb|EEC74019.1| hypothetical protein OsI_08962 [Oryza sativa Indica Group]
gi|222623685|gb|EEE57817.1| hypothetical protein OsJ_08407 [Oryza sativa Japonica Group]
Length = 877
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 38/143 (26%), Gaps = 30/143 (20%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF--------------- 55
+ KI + GD N ++ D+ M +
Sbjct: 709 QRIPDKILDHDRVIWLGDLNYRVALS--YDETKTLMGENDWDTLLEKDQLMIERQAGRVF 766
Query: 56 --PQEKESTCNVIKRNKSSLD-------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+E + + K + D R + + +Q S
Sbjct: 767 KGWKEGKIYFAPTYKYKQNSDSYAGETAKSKKKRRTPAWCDRILWHGQGIEQLQYIRGES 826
Query: 107 KLSTHCPL----TIEYDFEKGNV 125
+ S H P+ IE D + G++
Sbjct: 827 RFSDHRPVCSVFVIEADVDNGSM 849
>gi|15799885|ref|NP_285897.1| hypothetical protein Z0232 [Escherichia coli O157:H7 EDL933]
gi|15829459|ref|NP_308232.1| hypothetical protein ECs0205 [Escherichia coli O157:H7 str. Sakai]
gi|16128196|ref|NP_414745.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
gi|24111640|ref|NP_706150.1| hypothetical protein SF0195 [Shigella flexneri 2a str. 301]
gi|30061761|ref|NP_835932.1| hypothetical protein S0203 [Shigella flexneri 2a str. 2457T]
gi|74310824|ref|YP_309243.1| hypothetical protein SSON_0223 [Shigella sonnei Ss046]
gi|82542802|ref|YP_406749.1| hypothetical protein SBO_0198 [Shigella boydii Sb227]
gi|89107084|ref|AP_000864.1| hypothetical protein [Escherichia coli str. K-12 substr. W3110]
gi|110804256|ref|YP_687776.1| hypothetical protein SFV_0193 [Shigella flexneri 5 str. 8401]
gi|157155840|ref|YP_001461374.1| hypothetical protein EcE24377A_0214 [Escherichia coli E24377A]
gi|168750157|ref|ZP_02775179.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4113]
gi|168758942|ref|ZP_02783949.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4401]
gi|168765059|ref|ZP_02790066.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4501]
gi|168769972|ref|ZP_02794979.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4486]
gi|168776187|ref|ZP_02801194.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4196]
gi|168782934|ref|ZP_02807941.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4076]
gi|170021443|ref|YP_001726397.1| hypothetical protein EcolC_3456 [Escherichia coli ATCC 8739]
gi|170079840|ref|YP_001729160.1| hypothetical protein ECDH10B_0190 [Escherichia coli str. K-12
substr. DH10B]
gi|170679930|ref|YP_001742332.1| hypothetical protein EcSMS35_0223 [Escherichia coli SMS-3-5]
gi|189405315|ref|ZP_02814659.2| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC869]
gi|189405938|ref|ZP_02825396.2| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC508]
gi|191171387|ref|ZP_03032936.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli F11]
gi|193063251|ref|ZP_03044342.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli E22]
gi|193067538|ref|ZP_03048505.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli E110019]
gi|194427654|ref|ZP_03060202.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli B171]
gi|194438248|ref|ZP_03070340.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli 101-1]
gi|195938581|ref|ZP_03083963.1| hypothetical protein EscherichcoliO157_19492 [Escherichia coli
O157:H7 str. EC4024]
gi|208808873|ref|ZP_03251210.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4206]
gi|208812648|ref|ZP_03253977.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4045]
gi|208818489|ref|ZP_03258809.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4042]
gi|209396743|ref|YP_002268812.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4115]
gi|215485365|ref|YP_002327796.1| hypothetical protein E2348C_0209 [Escherichia coli O127:H6 str.
E2348/69]
gi|217324748|ref|ZP_03440832.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. TW14588]
gi|218547659|ref|YP_002381450.1| hypothetical protein EFER_0238 [Escherichia fergusonii ATCC 35469]
gi|218552784|ref|YP_002385697.1| hypothetical protein ECIAI1_0217 [Escherichia coli IAI1]
gi|218557145|ref|YP_002390058.1| hypothetical protein ECS88_0224 [Escherichia coli S88]
gi|218688079|ref|YP_002396291.1| hypothetical protein ECED1_0214 [Escherichia coli ED1a]
gi|218693671|ref|YP_002401338.1| hypothetical protein EC55989_0208 [Escherichia coli 55989]
gi|218698844|ref|YP_002406473.1| hypothetical protein ECIAI39_0440 [Escherichia coli IAI39]
gi|218703458|ref|YP_002410977.1| hypothetical protein ECUMN_0206 [Escherichia coli UMN026]
gi|238899602|ref|YP_002925398.1| hypothetical protein BWG_0196 [Escherichia coli BW2952]
gi|254160323|ref|YP_003043431.1| hypothetical protein ECB_00202 [Escherichia coli B str. REL606]
gi|254791336|ref|YP_003076173.1| hypothetical protein ECSP_0208 [Escherichia coli O157:H7 str.
TW14359]
gi|256020175|ref|ZP_05434040.1| hypothetical protein ShiD9_14756 [Shigella sp. D9]
gi|256024152|ref|ZP_05438017.1| hypothetical protein E4_12307 [Escherichia sp. 4_1_40B]
gi|260842435|ref|YP_003220213.1| hypothetical protein ECO103_0203 [Escherichia coli O103:H2 str.
12009]
gi|260853414|ref|YP_003227305.1| hypothetical protein ECO26_0208 [Escherichia coli O26:H11 str.
11368]
gi|261223760|ref|ZP_05938041.1| hypothetical protein EscherichiacoliO157_04021 [Escherichia coli
O157:H7 str. FRIK2000]
gi|291281026|ref|YP_003497844.1| hypothetical protein G2583_0213 [Escherichia coli O55:H7 str.
CB9615]
gi|293403288|ref|ZP_06647379.1| hypothetical protein ECGG_03996 [Escherichia coli FVEC1412]
gi|293408298|ref|ZP_06652137.1| conserved hypothetical protein [Escherichia coli B354]
gi|293418303|ref|ZP_06660738.1| yafD protein [Escherichia coli B088]
gi|298378902|ref|ZP_06988783.1| yafD protein [Escherichia coli FVEC1302]
gi|301028967|ref|ZP_07192129.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 196-1]
gi|306813371|ref|ZP_07447564.1| hypothetical protein ECNC101_15712 [Escherichia coli NC101]
gi|307136804|ref|ZP_07496160.1| hypothetical protein EcolH7_01548 [Escherichia coli H736]
gi|331640659|ref|ZP_08341806.1| putative cytoplasmic protein [Escherichia coli H736]
gi|331651114|ref|ZP_08352139.1| putative cytoplasmic protein [Escherichia coli M718]
gi|331656199|ref|ZP_08357161.1| putative cytoplasmic protein [Escherichia coli TA206]
gi|331661579|ref|ZP_08362502.1| putative cytoplasmic protein [Escherichia coli TA143]
gi|331666450|ref|ZP_08367330.1| putative cytoplasmic protein [Escherichia coli TA271]
gi|331671739|ref|ZP_08372535.1| putative cytoplasmic protein [Escherichia coli TA280]
gi|331675867|ref|ZP_08376584.1| putative cytoplasmic protein [Escherichia coli H591]
gi|331681590|ref|ZP_08382226.1| putative cytoplasmic protein [Escherichia coli H299]
gi|332281338|ref|ZP_08393751.1| conserved hypothetical protein [Shigella sp. D9]
gi|67476042|sp|P0A8U2|YAFD_ECOLI RecName: Full=UPF0294 protein yafD
gi|67476043|sp|P0A8U3|YAFD_ECOL6 RecName: Full=UPF0294 protein yafD
gi|67476044|sp|P0A8U4|YAFD_ECO57 RecName: Full=UPF0294 protein yafD
gi|67476045|sp|P0A8U5|YAFD_SHIFL RecName: Full=UPF0294 protein yafD
gi|122957653|sp|Q0T805|YAFD_SHIF8 RecName: Full=UPF0294 protein yafD
gi|123560517|sp|Q325T7|YAFD_SHIBS RecName: Full=UPF0294 protein yafD
gi|123618010|sp|Q3Z5F4|YAFD_SHISS RecName: Full=UPF0294 protein yafD
gi|166919054|sp|A7ZHU5|YAFD_ECO24 RecName: Full=UPF0294 protein yafD
gi|189040684|sp|B1IPU9|YAFD_ECOLC RecName: Full=UPF0294 protein yafD
gi|226708924|sp|B7MBI5|YAFD_ECO45 RecName: Full=UPF0294 protein yafD
gi|226708925|sp|B5Z0I3|YAFD_ECO5E RecName: Full=UPF0294 protein yafD
gi|226708926|sp|B7NKW9|YAFD_ECO7I RecName: Full=UPF0294 protein yafD
gi|226708927|sp|B7M208|YAFD_ECO8A RecName: Full=UPF0294 protein yafD
gi|226708928|sp|B1XD73|YAFD_ECODH RecName: Full=UPF0294 protein yafD
gi|226708929|sp|B7N871|YAFD_ECOLU RecName: Full=UPF0294 protein yafD
gi|226708930|sp|B1LHL8|YAFD_ECOSM RecName: Full=UPF0294 protein yafD
gi|226708931|sp|B7LW84|YAFD_ESCF3 RecName: Full=UPF0294 protein yafD
gi|254807342|sp|B7UJA5|YAFD_ECO27 RecName: Full=UPF0294 protein yafD
gi|254807343|sp|B7LHB5|YAFD_ECO55 RecName: Full=UPF0294 protein yafD
gi|254807344|sp|B7MP64|YAFD_ECO81 RecName: Full=UPF0294 protein yafD
gi|259710201|sp|C4ZRU6|YAFD_ECOBW RecName: Full=UPF0294 protein yafD
gi|12512937|gb|AAG54505.1|AE005196_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|1786403|gb|AAC73314.1| conserved protein [Escherichia coli str. K-12 substr. MG1655]
gi|13359661|dbj|BAB33628.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|24050412|gb|AAN41857.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30040003|gb|AAP15737.1| hypothetical protein S0203 [Shigella flexneri 2a str. 2457T]
gi|73854301|gb|AAZ87008.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81244213|gb|ABB64921.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|85674383|dbj|BAA77880.2| conserved hypothetical protein [Escherichia coli str. K12 substr.
W3110]
gi|110613804|gb|ABF02471.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|157077870|gb|ABV17578.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli E24377A]
gi|169756371|gb|ACA79070.1| Endonuclease/exonuclease/phosphatase [Escherichia coli ATCC 8739]
gi|169887675|gb|ACB01382.1| conserved protein [Escherichia coli str. K-12 substr. DH10B]
gi|170517648|gb|ACB15826.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli SMS-3-5]
gi|187768403|gb|EDU32247.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4196]
gi|188015582|gb|EDU53704.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4113]
gi|188999640|gb|EDU68626.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4076]
gi|189354342|gb|EDU72761.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4401]
gi|189361059|gb|EDU79478.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4486]
gi|189365064|gb|EDU83480.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4501]
gi|189370750|gb|EDU89166.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC869]
gi|189377347|gb|EDU95763.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC508]
gi|190908321|gb|EDV67911.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli F11]
gi|192931159|gb|EDV83762.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli E22]
gi|192958950|gb|EDV89386.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli E110019]
gi|194414424|gb|EDX30698.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli B171]
gi|194422912|gb|EDX38907.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli 101-1]
gi|208728674|gb|EDZ78275.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4206]
gi|208733925|gb|EDZ82612.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4045]
gi|208738612|gb|EDZ86294.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4042]
gi|209158143|gb|ACI35576.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. EC4115]
gi|209745534|gb|ACI71074.1| hypothetical protein ECs0205 [Escherichia coli]
gi|209745536|gb|ACI71075.1| hypothetical protein ECs0205 [Escherichia coli]
gi|209745538|gb|ACI71076.1| hypothetical protein ECs0205 [Escherichia coli]
gi|209745540|gb|ACI71077.1| hypothetical protein ECs0205 [Escherichia coli]
gi|209745542|gb|ACI71078.1| hypothetical protein ECs0205 [Escherichia coli]
gi|215263437|emb|CAS07757.1| predicted protein [Escherichia coli O127:H6 str. E2348/69]
gi|217320969|gb|EEC29393.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli O157:H7 str. TW14588]
gi|218350403|emb|CAU96088.1| conserved hypothetical protein [Escherichia coli 55989]
gi|218355200|emb|CAQ87807.1| conserved hypothetical protein [Escherichia fergusonii ATCC 35469]
gi|218359552|emb|CAQ97092.1| conserved hypothetical protein [Escherichia coli IAI1]
gi|218363914|emb|CAR01579.1| conserved hypothetical protein [Escherichia coli S88]
gi|218368830|emb|CAR16578.1| conserved hypothetical protein [Escherichia coli IAI39]
gi|218425643|emb|CAR06430.1| conserved hypothetical protein [Escherichia coli ED1a]
gi|218430555|emb|CAR11421.1| conserved hypothetical protein [Escherichia coli UMN026]
gi|222032034|emb|CAP74773.1| UPF0294 protein yafD [Escherichia coli LF82]
gi|238860431|gb|ACR62429.1| conserved protein [Escherichia coli BW2952]
gi|242376039|emb|CAQ30724.1| conserved protein [Escherichia coli BL21(DE3)]
gi|253972224|gb|ACT37895.1| hypothetical protein ECB_00202 [Escherichia coli B str. REL606]
gi|253976433|gb|ACT42103.1| hypothetical protein ECD_00202 [Escherichia coli BL21(DE3)]
gi|254590736|gb|ACT70097.1| endonuclease-exonuclease-phosphatase family member [Escherichia
coli O157:H7 str. TW14359]
gi|257752063|dbj|BAI23565.1| conserved predicted protein [Escherichia coli O26:H11 str. 11368]
gi|257757582|dbj|BAI29079.1| conserved predicted protein [Escherichia coli O103:H2 str. 12009]
gi|281177429|dbj|BAI53759.1| conserved hypothetical protein [Escherichia coli SE15]
gi|281599560|gb|ADA72544.1| protein yafD [Shigella flexneri 2002017]
gi|284919979|emb|CBG33034.1| conserved hypothetical protein [Escherichia coli 042]
gi|290760899|gb|ADD54860.1| hypothetical protein G2583_0213 [Escherichia coli O55:H7 str.
CB9615]
gi|291324831|gb|EFE64246.1| yafD protein [Escherichia coli B088]
gi|291429141|gb|EFF02161.1| hypothetical protein ECGG_03996 [Escherichia coli FVEC1412]
gi|291471476|gb|EFF13959.1| conserved hypothetical protein [Escherichia coli B354]
gi|294490031|gb|ADE88787.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli IHE3034]
gi|298280015|gb|EFI21519.1| yafD protein [Escherichia coli FVEC1302]
gi|299878066|gb|EFI86277.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 196-1]
gi|305854134|gb|EFM54573.1| hypothetical protein ECNC101_15712 [Escherichia coli NC101]
gi|307628310|gb|ADN72614.1| hypothetical protein UM146_16285 [Escherichia coli UM146]
gi|309700411|emb|CBI99700.1| conserved hypothetical protein [Escherichia coli ETEC H10407]
gi|315134894|dbj|BAJ42053.1| conserved hypothetical protein [Escherichia coli DH1]
gi|320173690|gb|EFW48879.1| hypothetical protein SDB_03792 [Shigella dysenteriae CDC 74-1112]
gi|320190270|gb|EFW64920.1| hypothetical protein ECoD_01682 [Escherichia coli O157:H7 str.
EC1212]
gi|320201196|gb|EFW75779.1| hypothetical protein ECoL_01622 [Escherichia coli EC4100B]
gi|320638229|gb|EFX07957.1| hypothetical protein ECO5101_15235 [Escherichia coli O157:H7 str.
G5101]
gi|320643613|gb|EFX12757.1| hypothetical protein ECO9389_15409 [Escherichia coli O157:H- str.
493-89]
gi|320650349|gb|EFX18826.1| hypothetical protein ECO2687_14956 [Escherichia coli O157:H- str. H
2687]
gi|320654624|gb|EFX22625.1| hypothetical protein ECO7815_10207 [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320660192|gb|EFX27702.1| hypothetical protein ECO5905_08723 [Escherichia coli O55:H7 str.
USDA 5905]
gi|320665443|gb|EFX32505.1| hypothetical protein ECOSU61_12435 [Escherichia coli O157:H7 str.
LSU-61]
gi|323938751|gb|EGB34997.1| endonuclease/Exonuclease/phosphatase [Escherichia coli E1520]
gi|323943434|gb|EGB39585.1| endonuclease/Exonuclease/phosphatase [Escherichia coli E482]
gi|323945577|gb|EGB41627.1| endonuclease/Exonuclease/phosphatase [Escherichia coli H120]
gi|323958793|gb|EGB54492.1| endonuclease/Exonuclease/phosphatase [Escherichia coli H263]
gi|323963572|gb|EGB59129.1| endonuclease/Exonuclease/phosphatase [Escherichia coli H489]
gi|323972501|gb|EGB67707.1| endonuclease/Exonuclease/phosphatase [Escherichia coli TA007]
gi|323975924|gb|EGB71019.1| endonuclease/Exonuclease/phosphatase [Escherichia coli TW10509]
gi|324111229|gb|EGC05212.1| endonuclease/Exonuclease/phosphatase [Escherichia fergusonii B253]
gi|324115453|gb|EGC09395.1| endonuclease/Exonuclease/phosphatase [Escherichia coli E1167]
gi|326338815|gb|EGD62634.1| hypothetical protein ECoA_04876 [Escherichia coli O157:H7 str.
1044]
gi|326342394|gb|EGD66174.1| hypothetical protein ECF_02903 [Escherichia coli O157:H7 str. 1125]
gi|330910055|gb|EGH38565.1| hypothetical protein ECAA86_00338 [Escherichia coli AA86]
gi|331040033|gb|EGI12241.1| putative cytoplasmic protein [Escherichia coli H736]
gi|331050855|gb|EGI22907.1| putative cytoplasmic protein [Escherichia coli M718]
gi|331054447|gb|EGI26456.1| putative cytoplasmic protein [Escherichia coli TA206]
gi|331060001|gb|EGI31965.1| putative cytoplasmic protein [Escherichia coli TA143]
gi|331066295|gb|EGI38173.1| putative cytoplasmic protein [Escherichia coli TA271]
gi|331070728|gb|EGI42087.1| putative cytoplasmic protein [Escherichia coli TA280]
gi|331076427|gb|EGI47704.1| putative cytoplasmic protein [Escherichia coli H591]
gi|331081164|gb|EGI52326.1| putative cytoplasmic protein [Escherichia coli H299]
gi|332103690|gb|EGJ07036.1| conserved hypothetical protein [Shigella sp. D9]
Length = 266
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 176 DQIAHHSGPVIMAGDFNA---------WSRRRMNALYRFAREMSLRQVRFTDDQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 227 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 260
>gi|82775595|ref|YP_401942.1| hypothetical protein SDY_0228 [Shigella dysenteriae Sd197]
gi|123563459|sp|Q32JQ4|YAFD_SHIDS RecName: Full=UPF0294 protein yafD
gi|81239743|gb|ABB60453.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 266
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 176 DQIAHHSGPVIMAGDFNA---------WSRRRMNALYRFAREMSLRQVRFTDDQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 227 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 260
>gi|323176521|gb|EFZ62113.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli 1180]
Length = 259
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 169 DQIAHHSGPVIMAGDFNA---------WSRRRMNALYRFAREMSLRQVRFTDDQRRRAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 220 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 253
>gi|260462359|ref|ZP_05810567.1| Endonuclease/exonuclease/phosphatase [Mesorhizobium opportunistum
WSM2075]
gi|259031853|gb|EEW33121.1| Endonuclease/exonuclease/phosphatase [Mesorhizobium opportunistum
WSM2075]
Length = 336
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 12/117 (10%), Positives = 27/117 (23%), Gaps = 13/117 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + ++ G ++AGD N S +
Sbjct: 206 REQNWQIGELSNSISSLGETAIMAGDCNAVPWSAAVRRVASLGGLTVM--------PSAG 257
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + ++ S S H P+ +E+
Sbjct: 258 PTWLYIKLPDVLRRFAGLPIDQVFSKGGVTVHSA-----TRLEDTGSDHLPVLVEFS 309
>gi|302552808|ref|ZP_07305150.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
gi|302470426|gb|EFL33519.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
Length = 334
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 11/120 (9%), Positives = 29/120 (24%), Gaps = 16/120 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L+ +P V+AGDFN + + L +
Sbjct: 229 KHELGALRH--AATTDRDLPLVLAGDFNASQDHAVFRRILDTGLYDASRLDGADRTATWP 286
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + +D+ ++ + + + H + +
Sbjct: 287 ASTAATFGAQIDHVLVSE--------------DFGANRTRVLDVAGTDHRAVVTNLTLHE 332
>gi|305666478|ref|YP_003862765.1| hypothetical protein FB2170_09421 [Maribacter sp. HTCC2170]
gi|88708745|gb|EAR00980.1| hypothetical protein FB2170_09421 [Maribacter sp. HTCC2170]
Length = 297
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 20/158 (12%), Positives = 32/158 (20%), Gaps = 39/158 (24%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNR-KINSIGDTDDFWQKMDPDGLLIR------- 54
S++ E L D +IK G ++ GDFN + +
Sbjct: 140 SEEAEILSGIIDLEIKAGNKVLVCGDFNALSPADADWYNSRADLLQDARKRDEKNDQSEN 199
Query: 55 FPQEKESTCNVIKRNKSSLDY------------------------------FVIDRDNKN 84
+ + K L
Sbjct: 200 LREGNFDYSVMSKFYGVGLFDNASKFVGTGNDRISFPTQVFRKTETDKKKLIDRGTRIDY 259
Query: 85 FLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYDFE 121
L + D LS H P+ + E
Sbjct: 260 ILTSYNLVNQCIDTKIYNGPEAYFLSDHYPVESSFILE 297
>gi|15642236|ref|NP_231869.1| hypothetical protein VC2238 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|147674622|ref|YP_001217754.1| hypothetical protein VC0395_A1830 [Vibrio cholerae O395]
gi|153817077|ref|ZP_01969744.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153820823|ref|ZP_01973490.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|227082362|ref|YP_002810913.1| hypothetical protein VCM66_2161 [Vibrio cholerae M66-2]
gi|229507687|ref|ZP_04397192.1| hypothetical protein VCF_002916 [Vibrio cholerae BX 330286]
gi|229512118|ref|ZP_04401597.1| hypothetical protein VCE_003528 [Vibrio cholerae B33]
gi|229519253|ref|ZP_04408696.1| hypothetical protein VCC_003283 [Vibrio cholerae RC9]
gi|229607191|ref|YP_002877839.1| hypothetical protein VCD_002102 [Vibrio cholerae MJ-1236]
gi|254849369|ref|ZP_05238719.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255747064|ref|ZP_05421009.1| hypothetical protein VCH_003471 [Vibrio cholera CIRS 101]
gi|262161391|ref|ZP_06030501.1| hypothetical protein VIG_002639 [Vibrio cholerae INDRE 91/1]
gi|262167739|ref|ZP_06035441.1| hypothetical protein VIJ_000909 [Vibrio cholerae RC27]
gi|298500387|ref|ZP_07010192.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|39932543|sp|Q9KPX4|Y2238_VIBCH RecName: Full=UPF0294 protein VC_2238
gi|172047618|sp|A5F637|Y3030_VIBC3 RecName: Full=UPF0294 protein VC0395_A1830/VC395_2354
gi|254801557|sp|C3LPP2|Y2161_VIBCM RecName: Full=UPF0294 protein VCM66_2161
gi|9656797|gb|AAF95382.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|126512345|gb|EAZ74939.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|126521615|gb|EAZ78838.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|146316505|gb|ABQ21044.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|227010250|gb|ACP06462.1| conserved hypothetical protein [Vibrio cholerae M66-2]
gi|227014134|gb|ACP10344.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|229343942|gb|EEO08917.1| hypothetical protein VCC_003283 [Vibrio cholerae RC9]
gi|229352083|gb|EEO17024.1| hypothetical protein VCE_003528 [Vibrio cholerae B33]
gi|229355192|gb|EEO20113.1| hypothetical protein VCF_002916 [Vibrio cholerae BX 330286]
gi|229369846|gb|ACQ60269.1| hypothetical protein VCD_002102 [Vibrio cholerae MJ-1236]
gi|254845074|gb|EET23488.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255735466|gb|EET90866.1| hypothetical protein VCH_003471 [Vibrio cholera CIRS 101]
gi|262023804|gb|EEY42503.1| hypothetical protein VIJ_000909 [Vibrio cholerae RC27]
gi|262028702|gb|EEY47356.1| hypothetical protein VIG_002639 [Vibrio cholerae INDRE 91/1]
gi|297541080|gb|EFH77134.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
Length = 281
Score = 36.7 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 30/114 (26%), Gaps = 20/114 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L D+ P ++AGDFN + + L QE V
Sbjct: 186 QQLIALLDELRDFTGPVIVAGDFNS-------WSEARMALLSTQLASVGLQE------VR 232
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + F SD S H PL + +
Sbjct: 233 FSPDNRTTFINGLPLDHVFYRGLQLEKAEAPISD-------ASDHNPLLVRFRL 279
>gi|297735011|emb|CBI17373.3| unnamed protein product [Vitis vinifera]
Length = 400
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 16/158 (10%), Positives = 34/158 (21%), Gaps = 46/158 (29%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIG------------DTDDFWQKMDPD----- 49
+ L+K + + G + GD N +I F +
Sbjct: 175 QILQKRWETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSMLVECGGPFF 234
Query: 50 GLLIRFPQE-KESTCNVIK-------RNKSSLDYFVIDRDNKNFLIDNS------FSIVS 95
+ + +E+ S +D+ + + +
Sbjct: 235 DVFRAKHPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDRIFVTCHVKE 294
Query: 96 YDQSDLDTRRSK---------------LSTHCPLTIEY 118
D R S H P+ +
Sbjct: 295 CDILTQFKRWKPGNKPRWKGGRSIKLEGSDHAPVFMSL 332
>gi|229056209|ref|ZP_04195634.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH603]
gi|228721126|gb|EEL72659.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus AH603]
Length = 263
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + + GDFN ++ G + + L ++ ++
Sbjct: 156 DRLMERVNSNELSFLMGDFNNNARLEGEGYEYTMQKGLYDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S ++ S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKQNLRIDLILSNQSKTVNSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|225431130|ref|XP_002265926.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 625
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 16/158 (10%), Positives = 34/158 (21%), Gaps = 46/158 (29%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIG------------DTDDFWQKMDPD----- 49
+ L+K + + G + GD N +I F +
Sbjct: 175 QILQKRWETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSMLVECGGPFF 234
Query: 50 GLLIRFPQE-KESTCNVIK-------RNKSSLDYFVIDRDNKNFLIDNS------FSIVS 95
+ + +E+ S +D+ + + +
Sbjct: 235 DVFRAKHPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDRIFVTCHVKE 294
Query: 96 YDQSDLDTRRSK---------------LSTHCPLTIEY 118
D R S H P+ +
Sbjct: 295 CDILTQFKRWKPGNKPRWKGGRSIKLEGSDHAPVFMSL 332
>gi|147789500|emb|CAN69587.1| hypothetical protein VITISV_019797 [Vitis vinifera]
Length = 632
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 16/158 (10%), Positives = 34/158 (21%), Gaps = 46/158 (29%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIG------------DTDDFWQKMDPD----- 49
+ L+K + + G + GD N +I F +
Sbjct: 182 QILQKRWETLQQQGRRIFVVGDLNIAPAAIDRCDAGPDFEKNEFRRWFRSMLVECGGPFF 241
Query: 50 GLLIRFPQE-KESTCNVIK-------RNKSSLDYFVIDRDNKNFLIDNS------FSIVS 95
+ + +E+ S +D+ + + +
Sbjct: 242 DVFRAKHPDRREAYTCWSSSTGAEEFNYGSRIDHILSSGSCLHQDHCLQDRIFVTCHVKE 301
Query: 96 YDQSDLDTRRSK---------------LSTHCPLTIEY 118
D R S H P+ +
Sbjct: 302 CDILTQFKRWKPGNKPRWKGGRSIKLEGSDHAPVFMSL 339
>gi|262203792|ref|YP_003275000.1| endonuclease/exonuclease/phosphatase [Gordonia bronchialis DSM
43247]
gi|262087139|gb|ACY23107.1| Endonuclease/exonuclease/phosphatase [Gordonia bronchialis DSM
43247]
Length = 318
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 26/109 (23%), Gaps = 7/109 (6%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L++ A +P +I DFN + D G + ++
Sbjct: 214 LRRLAGALRAEQLPLIIGADFNSTYDHRRFRDLLS-GSSSPGSPQLTDAAEHLGTGIVAT 272
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ L S+ DL S H +
Sbjct: 273 YPA-DRTISPMLALDRVLTRAGPVPTSFVAVDLP-----GSDHRGVVAT 315
>gi|296112314|ref|YP_003626252.1| endonuclease/exonuclease/phosphatase [Moraxella catarrhalis RH4]
gi|295920008|gb|ADG60359.1| endonuclease/exonuclease/phosphatase [Moraxella catarrhalis RH4]
gi|326561824|gb|EGE12159.1| endonuclease/exonuclease/phosphatase [Moraxella catarrhalis 7169]
gi|326563256|gb|EGE13523.1| endonuclease/exonuclease/phosphatase [Moraxella catarrhalis
46P47B1]
gi|326563370|gb|EGE13635.1| endonuclease/exonuclease/phosphatase [Moraxella catarrhalis
12P80B1]
gi|326576470|gb|EGE26378.1| endonuclease/exonuclease/phosphatase [Moraxella catarrhalis CO72]
Length = 249
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 12/113 (10%), Positives = 32/113 (28%), Gaps = 16/113 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + ++ + + ++AGDFN + + ++ E
Sbjct: 146 KQYQAIRDYIVT-LPADASLILAGDFNDWSKKSC---QALSSLGLSEVFLQVHGE----- 196
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ + + + + S LS H P++
Sbjct: 197 -----YPATFPAKMPVLSLDRIYVRRLKVHNAMVHGGVPW--SNLSDHLPISA 242
>gi|293572282|ref|ZP_06683281.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium E980]
gi|291607741|gb|EFF37064.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecium E980]
Length = 276
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 2/102 (1%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+T P GDFN +S G + + ++ ++ V K+
Sbjct: 175 ETRAPLFFLGDFNNPADSEGYHIVKESGLLLQDSYVIANEKGKAAT-VEKKIDGWEQNT- 232
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + Y + +S H IE D
Sbjct: 233 EKLRIDFIFVPEGVRVKKYQRIFDGIDSPIISDHYGAEIEID 274
>gi|222478473|ref|YP_002564710.1| Endonuclease/exonuclease/phosphatase [Halorubrum lacusprofundi ATCC
49239]
gi|222451375|gb|ACM55640.1| Endonuclease/exonuclease/phosphatase [Halorubrum lacusprofundi ATCC
49239]
Length = 280
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 38/135 (28%), Gaps = 17/135 (12%)
Query: 3 SQQGEWLKKWA-------DQKIKTGIPFVIAGDFNRKINSIGDT----DDFWQKMDPDGL 51
+ L + + IP V+ GDFN S DD + D +
Sbjct: 146 RESARLLCQRLPDVAGPDAGESDETIPVVLVGDFNCTSGSDPHRILVGDDPTAETDTAPI 205
Query: 52 LIRFPQEKESTCNVIKRNKS-----SLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRR 105
+++ R+ + R + L+ ++ +D D R
Sbjct: 206 DDSGIALRDAATAADLRHGPETSLTDFARLIDGRRIDHALVSPEVGAEAFATLTDRDDRG 265
Query: 106 SKLSTHCPLTIEYDF 120
S H P+
Sbjct: 266 RYPSDHLPVLARLAL 280
>gi|17545927|ref|NP_519329.1| hypothetical protein RSc1208 [Ralstonia solanacearum GMI1000]
gi|17428222|emb|CAD14910.1| probable metal-dependent hydrolase protein [Ralstonia solanacearum
GMI1000]
Length = 289
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 14/103 (13%), Positives = 24/103 (23%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ VI GDFN K +S L +
Sbjct: 184 LAQTRATVICGDFNCKPDSKPKRLATVPFSHEAAALYDAWETAHGPTPQPPTFGVHDRTG 243
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + ++ S H P +E
Sbjct: 244 WTEPAYACDFMLVSEPLKTRVTRVEVNSTTQASDHQPTLLELR 286
>gi|85703791|ref|ZP_01034895.1| endonuclease/exonuclease/phosphatase family protein [Roseovarius
sp. 217]
gi|85672719|gb|EAQ27576.1| endonuclease/exonuclease/phosphatase family protein [Roseovarius
sp. 217]
Length = 126
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 16/126 (12%), Positives = 31/126 (24%), Gaps = 28/126 (22%)
Query: 23 FVIAGDFNRKINSIGDT-----------------------DDFWQKMDPDGLLIRFPQEK 59
++ GD N D + +
Sbjct: 1 MIVLGDLNDGPGLDEYEHLFGRSSLEIITGEGQETALTLFDPHAHGALTQRIGAIHTTAR 60
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNK-----NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ + ++ LDY +I D + +D DL S H P+
Sbjct: 61 FYIRDKKRYMQALLDYILISPDLMARRPVWRIWHPFDDPGCWDNRDLREALLAASDHFPV 120
Query: 115 TIEYDF 120
T++ +
Sbjct: 121 TLDLEL 126
>gi|294643629|ref|ZP_06721431.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CC 2a]
gi|294808048|ref|ZP_06766821.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
xylanisolvens SD CC 1b]
gi|292641006|gb|EFF59222.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CC 2a]
gi|294444689|gb|EFG13383.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
xylanisolvens SD CC 1b]
Length = 297
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 28/119 (23%), Gaps = 20/119 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-TDDFWQKMDPDGLLIRFPQEKES 61
+ L K K P GDFN ++ T + D Q
Sbjct: 196 KHACQMLVDAVSDKAKDNTPAFCTGDFNATPDAPEIATTICQSGILKDAYREAAVQHGAL 255
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP--LTIEY 118
+ ++ + + S LS H P + +E
Sbjct: 256 FTFPS-----------KKTRIDFIFVKHATVLSTRTIV------SSLSDHYPMVIVVEI 297
>gi|289619041|emb|CBI54309.1| unnamed protein product [Sordaria macrospora]
Length = 459
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 6/78 (7%), Positives = 17/78 (21%), Gaps = 7/78 (8%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD--- 100
+ +D + ++ S + ++
Sbjct: 384 KCLDAVDVFRAIYGMEKRYTF----YSQSNVWGTSCNRVDMVIVSKQLWEDGRVIDTGIL 439
Query: 101 LDTRRSKLSTHCPLTIEY 118
+ S H P+ +E
Sbjct: 440 NTPQERGPSDHVPIWVEI 457
>gi|213964132|ref|ZP_03392371.1| endonuclease/exonuclease/phosphatase family protein [Capnocytophaga
sputigena Capno]
gi|213953225|gb|EEB64568.1| endonuclease/exonuclease/phosphatase family protein [Capnocytophaga
sputigena Capno]
Length = 253
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 8/123 (6%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN-RKINSIGDTDDFWQKMDPDGLLIR-FPQEK 59
L QQ K W KT P + GDFN + N G + +++ D L
Sbjct: 133 LHQQA---KDWERITKKTQNPLWVMGDFNQSRYNHQGYGTEKVRQLLSDYLKKLNLTCVT 189
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ---SDLDTRRSKLSTHCPLTI 116
E + + + D+ + +Y + +S H + I
Sbjct: 190 EGDLSPFLHPDPIKNKIRNNIDHICISNSFMLKMKAYQVGAWDHFNEEGKYMSDHNGVFI 249
Query: 117 EYD 119
++
Sbjct: 250 SFE 252
>gi|218235530|ref|YP_002365468.1| sphingomyelin phosphodiesterase C [Bacillus cereus B4264]
gi|218163487|gb|ACK63479.1| sphingomyelin phosphodiesterase C [Bacillus cereus B4264]
Length = 333
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 12/136 (8%), Positives = 32/136 (23%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I +I GD N + + ++ ++
Sbjct: 198 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENKNDSEYASMFKTLNASVPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + S ++ + S+ Q
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTY 317
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDYSDHYPVEATISMK 333
>gi|166710588|ref|ZP_02241795.1| hypothetical protein Xoryp_03765 [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 245
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 10/109 (9%), Positives = 27/109 (24%), Gaps = 21/109 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + ++ GDFN + + P E R
Sbjct: 151 AFIAELLSDHPNAMLMGDFNCMADRPEMQSLY-------RHTRLQPPSCEVHTFPSWRPD 203
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++D+ ++ + + S H + ++
Sbjct: 204 RAIDHILVSDRL--------------VIEHTEATPAAFSDHLAVGMDIR 238
>gi|37700336|gb|AAR00626.1| putative endonuclease/exonuclease/phosphatase family protein [Oryza
sativa Japonica Group]
Length = 1801
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 31/117 (26%), Gaps = 15/117 (12%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINS--------IGDTDDFWQKMDPDGLLIRFPQEKE 60
L + + +P +I GDFN +S + + L +
Sbjct: 1315 LAELVRACQQNPLPTLIGGDFNILRSSLEKNNDRFNDRWPFLFNAVIDSFDLREIALTRR 1374
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
++ L+ + S R LS H PL ++
Sbjct: 1375 QFTW------ANSLPSPTYEKLDRVLMTTEWESKYPLVSVQALDRV-LSDHTPLLLD 1424
>gi|157159670|ref|YP_001456988.1| hypothetical protein EcHS_A0213 [Escherichia coli HS]
gi|187731404|ref|YP_001879006.1| hypothetical protein SbBS512_E0205 [Shigella boydii CDC 3083-94]
gi|188492449|ref|ZP_02999719.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli 53638]
gi|209917396|ref|YP_002291480.1| hypothetical protein ECSE_0205 [Escherichia coli SE11]
gi|227884788|ref|ZP_04002593.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli 83972]
gi|253774769|ref|YP_003037600.1| hypothetical protein ECBD_3415 [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|261255830|ref|ZP_05948363.1| hypothetical protein EscherichiacoliO157EcO_08363 [Escherichia coli
O157:H7 str. FRIK966]
gi|297516534|ref|ZP_06934920.1| hypothetical protein EcolOP_02774 [Escherichia coli OP50]
gi|300819823|ref|ZP_07100009.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 107-1]
gi|300823393|ref|ZP_07103523.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 119-7]
gi|300900035|ref|ZP_07118232.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 198-1]
gi|300905648|ref|ZP_07123394.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 84-1]
gi|300919151|ref|ZP_07135684.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 115-1]
gi|300926571|ref|ZP_07142357.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 182-1]
gi|300927901|ref|ZP_07143461.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 187-1]
gi|300936080|ref|ZP_07151022.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 21-1]
gi|300949359|ref|ZP_07163371.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 116-1]
gi|300958298|ref|ZP_07170441.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 175-1]
gi|300988187|ref|ZP_07178588.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 45-1]
gi|300990970|ref|ZP_07179420.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 200-1]
gi|301021451|ref|ZP_07185475.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 69-1]
gi|301050544|ref|ZP_07197417.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 185-1]
gi|301305766|ref|ZP_07211852.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 124-1]
gi|301326093|ref|ZP_07219489.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 78-1]
gi|301645476|ref|ZP_07245413.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 146-1]
gi|307314701|ref|ZP_07594299.1| Endonuclease/exonuclease/phosphatase [Escherichia coli W]
gi|312964729|ref|ZP_07778980.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli 2362-75]
gi|312970307|ref|ZP_07784488.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli 1827-70]
gi|216647|dbj|BAA02172.1| ORF259 [Escherichia coli W3110]
gi|1552779|gb|AAB08631.1| hypothetical [Escherichia coli]
gi|157065350|gb|ABV04605.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli HS]
gi|187428396|gb|ACD07670.1| endonuclease/exonuclease/phosphatase family protein [Shigella
boydii CDC 3083-94]
gi|188487648|gb|EDU62751.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli 53638]
gi|209910655|dbj|BAG75729.1| conserved hypothetical protein [Escherichia coli SE11]
gi|227838229|gb|EEJ48695.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli 83972]
gi|253325813|gb|ACT30415.1| Endonuclease/exonuclease/phosphatase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260450593|gb|ACX41015.1| Endonuclease/exonuclease/phosphatase [Escherichia coli DH1]
gi|300297752|gb|EFJ54137.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 185-1]
gi|300305636|gb|EFJ60156.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 200-1]
gi|300315004|gb|EFJ64788.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 175-1]
gi|300356440|gb|EFJ72310.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 198-1]
gi|300398087|gb|EFJ81625.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 69-1]
gi|300402540|gb|EFJ86078.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 84-1]
gi|300407501|gb|EFJ91039.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 45-1]
gi|300413749|gb|EFJ97059.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 115-1]
gi|300417429|gb|EFK00740.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 182-1]
gi|300451242|gb|EFK14862.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 116-1]
gi|300458755|gb|EFK22248.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 21-1]
gi|300464056|gb|EFK27549.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 187-1]
gi|300524011|gb|EFK45080.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 119-7]
gi|300527581|gb|EFK48643.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 107-1]
gi|300838941|gb|EFK66701.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 124-1]
gi|300847153|gb|EFK74913.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 78-1]
gi|301076265|gb|EFK91071.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 146-1]
gi|306905820|gb|EFN36345.1| Endonuclease/exonuclease/phosphatase [Escherichia coli W]
gi|310336956|gb|EFQ02094.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli 1827-70]
gi|312290750|gb|EFR18628.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli 2362-75]
gi|313646734|gb|EFS11193.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri 2a str. 2457T]
gi|315059422|gb|ADT73749.1| conserved hypothetical protein [Escherichia coli W]
gi|315253523|gb|EFU33491.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 85-1]
gi|315289707|gb|EFU49100.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 110-3]
gi|315292135|gb|EFU51487.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 153-1]
gi|315300184|gb|EFU59421.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 16-3]
gi|315616893|gb|EFU97510.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli 3431]
gi|320179846|gb|EFW54792.1| hypothetical protein SGB_02961 [Shigella boydii ATCC 9905]
gi|320197305|gb|EFW71921.1| hypothetical protein EcoM_00501 [Escherichia coli WV_060327]
gi|323157956|gb|EFZ44058.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli EPECa14]
gi|323160262|gb|EFZ46219.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli E128010]
gi|323165908|gb|EFZ51690.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
sonnei 53G]
gi|323170996|gb|EFZ56645.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli LT-68]
gi|323181621|gb|EFZ67036.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli 1357]
gi|323191548|gb|EFZ76808.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli RN587/1]
gi|323380019|gb|ADX52287.1| Endonuclease/exonuclease/phosphatase [Escherichia coli KO11]
gi|324009115|gb|EGB78334.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 57-2]
gi|324011824|gb|EGB81043.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 60-1]
gi|324020679|gb|EGB89898.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 117-3]
gi|325496135|gb|EGC93994.1| hypothetical protein ECD227_0232 [Escherichia fergusonii ECD227]
gi|327254928|gb|EGE66538.1| endonuclease/Exonuclease/phosphatase family protein [Escherichia
coli STEC_7v]
gi|332093735|gb|EGI98790.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
boydii 3594-74]
gi|332095027|gb|EGJ00062.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
boydii 5216-82]
gi|332341537|gb|AEE54871.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|332754113|gb|EGJ84483.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri 2747-71]
gi|332761992|gb|EGJ92264.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri 4343-70]
gi|332764633|gb|EGJ94863.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri K-671]
gi|332768608|gb|EGJ98789.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri 2930-71]
gi|333008969|gb|EGK28428.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri K-218]
gi|333009682|gb|EGK29132.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri VA-6]
gi|333010749|gb|EGK30175.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri K-272]
gi|333021248|gb|EGK40501.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri K-227]
gi|333022177|gb|EGK41417.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
flexneri K-304]
Length = 259
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 169 DQIAHHSGPVIMAGDFNA---------WSRRRMNALYRFAREMSLRQVRFTDDQRRRAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 220 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 253
>gi|330817173|ref|YP_004360878.1| Endonuclease/exonuclease/phosphatase [Burkholderia gladioli BSR3]
gi|327369566|gb|AEA60922.1| Endonuclease/exonuclease/phosphatase [Burkholderia gladioli BSR3]
Length = 289
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 10/105 (9%), Positives = 22/105 (20%), Gaps = 7/105 (6%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI-RFPQEKESTCNVIKRNKSSLDYF 76
V+ GDFN + T + +
Sbjct: 188 ARARDAVVCGDFNSAWRDDAYRRLLAPIDGAPAFVDAWMHAHPGKTPPPTAGVHDTEQWR 247
Query: 77 VIDRDNKNFLIDNSFSI--VSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + ++ S H P+ +E
Sbjct: 248 QGSLTCDFVFVTETLRERILRCEIDST----TRASDHQPILLELR 288
>gi|229068359|ref|ZP_04201662.1| Sphingomyelinase C [Bacillus cereus F65185]
gi|228714820|gb|EEL66692.1| Sphingomyelinase C [Bacillus cereus F65185]
Length = 333
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 12/136 (8%), Positives = 32/136 (23%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I +I GD N + + ++ ++
Sbjct: 198 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENKNDSEYASMFKTLNASVPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + S ++ + S+ Q
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTY 317
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDYSDHYPVEATISMK 333
>gi|116311038|emb|CAH67969.1| OSIGBa0142I02-OSIGBa0101B20.12 [Oryza sativa Indica Group]
Length = 1230
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 7/115 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDG-LLIRFPQEKEST 62
+Q + LK P+++ GDFN + ++ E +
Sbjct: 416 RQIKRLKP------ADREPWLLFGDFNMIYRACDKNNNNLNLRRMGHFRAALEHCELKEV 469
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+R S + + N + + L S S HCPL +
Sbjct: 470 HLQNRRFTWSNERRKPTLVRLDRFYCNENWDLGFGHHILHALSSGTSDHCPLLLT 524
>gi|309787117|ref|ZP_07681729.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
dysenteriae 1617]
gi|308924695|gb|EFP70190.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
dysenteriae 1617]
Length = 259
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 169 DQIAHHSGPVIMAGDFNA---------WSRRRMNALYRFAREMSLRQVRFTDDQRRRAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 220 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 253
>gi|309797924|ref|ZP_07692304.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 145-7]
gi|308118464|gb|EFO55726.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli MS 145-7]
Length = 259
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 169 DQIAHHSGPVIMAGDFNA---------WSRRRMNALYRFAREMSLRQVRFTDDQRRRAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 220 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 253
>gi|254719872|ref|ZP_05181683.1| Endonuclease/exonuclease/phosphatase [Brucella sp. 83/13]
gi|265984886|ref|ZP_06097621.1| endonuclease/exonuclease/phosphatase [Brucella sp. 83/13]
gi|306837574|ref|ZP_07470446.1| Endonuclease/exonuclease/phosphatase [Brucella sp. NF 2653]
gi|264663478|gb|EEZ33739.1| endonuclease/exonuclease/phosphatase [Brucella sp. 83/13]
gi|306407358|gb|EFM63565.1| Endonuclease/exonuclease/phosphatase [Brucella sp. NF 2653]
Length = 285
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 27/121 (22%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ E + +P ++ GD N + + +
Sbjct: 167 EQQAETILSAL--HEADTLPTLLIGDLN-------EWRIGKRSSLSALMPTFNHVATAVP 217
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L I S + + R S H P+ D +
Sbjct: 218 SFPSR---------FPVLALDRVLGAPDNLITSVEVHNTPLARL-ASDHLPIKAHLDLKT 267
Query: 123 G 123
Sbjct: 268 A 268
>gi|167719260|ref|ZP_02402496.1| endonuclease/exonuclease/phosphatase family superfamily protein
[Burkholderia pseudomallei DM98]
Length = 107
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI--RFPQEKESTCNVIKRNKSSLDY 75
++ GDFN S D + ++ ++
Sbjct: 5 ARAADAIVCGDFNSAYRSDAYRRFLAPFPDAPRFVDAWLARHPGKTPPMTAGVYDTAQWS 64
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ F+ D +S + D + S H P+ +E
Sbjct: 65 EGPMTCDFAFVTDTLVRRLSRCEID---GTVRASDHQPIVLELS 105
>gi|159045260|ref|YP_001534054.1| putative endonuclease/exonuclease/phosphatase [Dinoroseobacter
shibae DFL 12]
gi|157913020|gb|ABV94453.1| putative endonuclease/exonuclease/phosphatase [Dinoroseobacter
shibae DFL 12]
Length = 375
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 19/158 (12%), Positives = 35/158 (22%), Gaps = 42/158 (26%)
Query: 4 QQGEWL--KKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+Q E + ++ +K + I GD N ++ + L P
Sbjct: 217 RQTEAILVRELITRKFPDPAAGLWAICGDLNDALSYRFVSSVRQADGSFAESLRDRPPSG 276
Query: 60 ESTCN----------------------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
E +D + +
Sbjct: 277 EDASGVAPLLEDGFGINLVAALPEAARWTHYYAGGRSKTQLDYVIASPALAARVRSTPEI 336
Query: 98 Q----------------SDLDTRRSKLSTHCPLTIEYD 119
+ R K S HCP+ +E+D
Sbjct: 337 IRTGMPQRVPNLDTPRYPRIGWDRPKASDHCPVVVEFD 374
>gi|108709406|gb|ABF97201.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1239
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 31/117 (26%), Gaps = 15/117 (12%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINS--------IGDTDDFWQKMDPDGLLIRFPQEKE 60
L + + +P +I GDFN +S + + L +
Sbjct: 753 LAELVRACQQNPLPTLIGGDFNILRSSLEKNNDRFNDRWPFLFNAVIDSFDLREIALTRR 812
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
++ L+ + S R LS H PL ++
Sbjct: 813 QFTW------ANSLPSPTYEKLDRVLMTTEWESKYPLVSVQALDRV-LSDHTPLLLD 862
>gi|58532125|emb|CAE04127.3| OSJNBa0009P12.14 [Oryza sativa Japonica Group]
Length = 1206
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 7/115 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDG-LLIRFPQEKEST 62
+Q + LK P+++ GDFN + ++ E +
Sbjct: 392 RQIKRLKP------ADREPWLLFGDFNMIYRACDKNNNNLNLRRMGHFRAALEHCELKEV 445
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+R S + + N + + L S S HCPL +
Sbjct: 446 HLQNRRFTWSNERRKPTLVRLDRFYCNENWDLGFGHHILHALSSGTSDHCPLLLT 500
>gi|21952510|gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 15/114 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------DFWQKMDPDGLLIRFPQEK 59
L+ A + + P++I GDFN+ ++ + + + +++ + P
Sbjct: 124 LELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITRGMEEFRECLLTSNISDLPFRG 183
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ + I + L+++S+ I S S + S HCP
Sbjct: 184 NHYTWWN-----NQENNPIAKKIDRILVNDSWLIAS-PLSYGSFCAMEFSDHCP 231
>gi|194432690|ref|ZP_03064975.1| endonuclease/exonuclease/phosphatase family protein [Shigella
dysenteriae 1012]
gi|194418952|gb|EDX35036.1| endonuclease/exonuclease/phosphatase family protein [Shigella
dysenteriae 1012]
gi|332097571|gb|EGJ02550.1| endonuclease/Exonuclease/phosphatase family protein [Shigella
dysenteriae 155-74]
Length = 259
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 169 DQIAHHSGPVIMAGDFNA---------WSRKRMNALYRFAREMSLRQVRFTDDQRRRAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 220 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 253
>gi|66802202|ref|XP_629883.1| hypothetical protein DDB_G0291958 [Dictyostelium discoideum AX4]
gi|60463317|gb|EAL61509.1| hypothetical protein DDB_G0291958 [Dictyostelium discoideum AX4]
Length = 1275
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 22/96 (22%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN N DD Q Q + +
Sbjct: 156 IIAGDFNCIHNDNSLLDDIIQSY--TYQHHLIDQGEFKNTPTHTHGNRLDRIYTQYNRID 213
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + LS H P++
Sbjct: 214 PENIYTQVHQIPSS----------LSDHNPISTTIS 239
>gi|332860859|ref|XP_003317535.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Pan
troglodytes]
Length = 466
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 24/122 (19%), Gaps = 26/122 (21%)
Query: 23 FVIAGDFNRKINSIGDTD--------------DFWQKMDPDGLLIRFPQEKESTCN---- 64
+I GD N I D + G
Sbjct: 140 VIILGDLNTAHRPIDHWDAVNLECFEEDPGRKWMDSLLSNLGCQSASHVGPFIDSYRCFQ 199
Query: 65 -------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + L D + I ++ Q+ S HCP+
Sbjct: 200 PKQEGAFTCWSAVTGARHLNYGSRLDYVLGDRTLVIDTF-QASFLLPEVMGSDHCPVGAV 258
Query: 118 YD 119
Sbjct: 259 LS 260
>gi|209694891|ref|YP_002262819.1| putative exported nuclease [Aliivibrio salmonicida LFI1238]
gi|208008842|emb|CAQ79049.1| putative exported nuclease [Aliivibrio salmonicida LFI1238]
Length = 890
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 13/77 (16%)
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------- 107
E+ +LD+ + + + ++ +S+L SK
Sbjct: 787 HSTETFSYTYSGELGNLDHALANESLAKRVTQIEDWHINATESNLFEYSSKYTGDMAKYN 846
Query: 108 ----LSTHCPLTIEYDF 120
S H P+ I ++
Sbjct: 847 DMYSASDHDPVVISLEY 863
>gi|121596014|ref|YP_987910.1| endonuclease/exonuclease/phosphatase [Acidovorax sp. JS42]
gi|120608094|gb|ABM43834.1| Endonuclease/exonuclease/phosphatase [Acidovorax sp. JS42]
Length = 279
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 29/116 (25%), Gaps = 15/116 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + P ++AGDFN D ++ + ++
Sbjct: 177 QQQLRRVSALVHS-FPAQDPVIVAGDFNDWRG--RAHDVLQREAGLHEVFVQAC------ 227
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + + + + +LS H PL E
Sbjct: 228 ----GRAVRTFPASLPLLPLDRIYVRGTSVHTPMSLPRRPWN--RLSDHAPLAAEI 277
>gi|91781292|ref|YP_556499.1| hypothetical protein Bxe_C1289 [Burkholderia xenovorans LB400]
gi|91693952|gb|ABE37149.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
Length = 290
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 12/99 (12%), Positives = 24/99 (24%), Gaps = 7/99 (7%)
Query: 24 VIAGDFNRKINSIGDTD---DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
+ GDFN + + V ++
Sbjct: 196 IFCGDFNSAFDGAAYRRMLEPVADAPSFADAWSCAHPGEPRAATVGLYDREQWPDGPFAC 255
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
D + + + + + S+ S H PL +E
Sbjct: 256 DFIFVTENLTPRVAACEVD----PHSRASDHQPLWLELR 290
>gi|71396231|ref|XP_802370.1| endonuclease/exonuclease/phosphatase [Trypanosoma cruzi strain CL
Brener]
gi|70862372|gb|EAN80924.1| endonuclease/exonuclease/phosphatase, putative [Trypanosoma cruzi]
Length = 330
Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 3/110 (2%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
++ + K ++ N + N +++ LL R + E + K
Sbjct: 213 EYIIKNHKDIRSILV---HNDQPNLERAKGLVFRRFYEGNLLFRPTYKYEIAHDAYNYTK 269
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + + D + + S H P+ +D
Sbjct: 270 KKDRMPAYCDRVLYKRGQGSRAGRVRIRLYTDVQHLRTSDHRPVVAIFDL 319
>gi|320155612|ref|YP_004187991.1| hypothetical protein VVM_01511 [Vibrio vulnificus MO6-24/O]
gi|319930924|gb|ADV85788.1| hypothetical protein VVMO6_00766 [Vibrio vulnificus MO6-24/O]
Length = 284
Score = 36.3 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 12/115 (10%), Positives = 32/115 (27%), Gaps = 20/115 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ + + P ++AGDFN + + + + + F ++ +
Sbjct: 187 QQVNDLIAALKEHPGPAIVAGDFN-TWSEKRLQAVTERLENAGLIEVAFSPDQRT----- 240
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
L + + + ++ S H PL + +
Sbjct: 241 --------------RFITGLPLDHVFYKGLEVQKAEAPQTDASDHNPLLVSFTLP 281
>gi|311109471|ref|YP_003982324.1| endonuclease/exonuclease/phosphatase family protein 2
[Achromobacter xylosoxidans A8]
gi|310764160|gb|ADP19609.1| endonuclease/exonuclease/phosphatase family protein 2
[Achromobacter xylosoxidans A8]
Length = 288
Score = 36.3 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 38/153 (24%), Gaps = 35/153 (22%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNR---------------------KINSIGDTDD 41
S+Q L + + + G P +IAGDFN S G
Sbjct: 137 SRQILALTERIRRMVPDGEPILIAGDFNDWGDRLAPLFVQQLGLYEVFSHAPRSHGGELP 196
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRN-------------KSSLDYFVIDRDNKNFLID 88
+ + + N V + +
Sbjct: 197 RLRDSVKRLSNALRGLPNGGVSVMERTNQLGMGDSSRLLLPPPRTFPAVFPWFRLDRIYQ 256
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
F++ S ++LS H PL E +
Sbjct: 257 RGFAVRSARVLRG-REWARLSDHSPLLAELELP 288
>gi|242240262|ref|YP_002988443.1| hypothetical protein Dd703_2844 [Dickeya dadantii Ech703]
gi|242132319|gb|ACS86621.1| Endonuclease/exonuclease/phosphatase [Dickeya dadantii Ech703]
Length = 255
Score = 36.3 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 21/104 (20%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
Q + P ++AGDFN S + ++ ++ L+ + R ++
Sbjct: 170 QLLNHHGPVIMAGDFNAW--SQPRLNALYRFVERMQLVEVMFAD-------DHRRRAFGR 220
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + +S + S H PL +E+
Sbjct: 221 PLDFIFYRELDVSRSSVLVTDA------------SDHNPLLVEF 252
>gi|229161351|ref|ZP_04289336.1| hypothetical protein bcere0009_21400 [Bacillus cereus R309803]
gi|228622165|gb|EEK79006.1| hypothetical protein bcere0009_21400 [Bacillus cereus R309803]
Length = 349
Score = 36.3 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 31/121 (25%), Gaps = 3/121 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q ++ T +P V GDFN + G + + + TC
Sbjct: 229 QLAQTRELLTGPGATDLPLVFIGDFNSNSDGSGPSYNLLINAGFKDTWTIAGKGNGLTCC 288
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY---DQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + D F D V +Q D S H +
Sbjct: 289 QDANVLNLISQLFVRIDLILFRGDFKVEKVDVIGEEQEDRTPTALWPSDHAGVVANLILP 348
Query: 122 K 122
Sbjct: 349 S 349
>gi|261856746|ref|YP_003264029.1| endonuclease/exonuclease/phosphatase [Halothiobacillus neapolitanus
c2]
gi|261837215|gb|ACX96982.1| Endonuclease/exonuclease/phosphatase [Halothiobacillus neapolitanus
c2]
Length = 286
Score = 36.3 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 13/114 (11%), Positives = 34/114 (29%), Gaps = 21/114 (18%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
L + + + ++ DFN N+ Q++ + L + +
Sbjct: 182 QLDRLIARCREFDGVNIVMADFNCTPNNRD-----LQRLCLEAGLKLPFAPPLTYPSWEP 236
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + L+ + + +D +S H PL+++
Sbjct: 237 KRA-----------IDHILVSENI-----EIESVDALTYGVSDHAPLSMQIKLP 274
>gi|12957722|gb|AAK09240.1|AC084320_27 putative reverse transcriptase [Oryza sativa Japonica Group]
gi|108711395|gb|ABF99190.1| retrotransposon protein, putative, LINE subclass [Oryza sativa
Japonica Group]
Length = 1135
Score = 36.3 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 37/114 (32%), Gaps = 4/114 (3%)
Query: 7 EWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTD--DFWQKMDPDGLLIRFPQEKESTC 63
+ + + G +++ GDFN + + +M I + +E
Sbjct: 226 DAFLRHIRRLKPNAGEGWLLFGDFNMIYRARDKNNGNLNLARMRRFRATIDRCELREIPL 285
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ S+ + + ++ +++ L + S HCPL +
Sbjct: 286 QNKRFTWSNERQRPTLVKLDHCFCNENWD-LAFHHHVLHALPTGPSDHCPLVLS 338
>gi|5410435|gb|AAD43057.1|AF134170_2 pol [Dictyostelium discoideum]
Length = 1275
Score = 36.3 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 22/96 (22%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN N DD Q Q + +
Sbjct: 156 IIAGDFNCIHNDNSLLDDIIQSY--TYQHHLIDQGEFKNTPTHTHGNRLDRIYTQYNRID 213
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + LS H P++
Sbjct: 214 PENIYTQVHQIPSS----------LSDHNPISTTIS 239
>gi|310768146|gb|ADP13096.1| Endonuclease/exonuclease/phosphatase [Erwinia sp. Ejp617]
Length = 372
Score = 36.3 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 26/105 (24%), Gaps = 16/105 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
P ++ GD N Q L+ + + C
Sbjct: 228 KSVASAAQPVIVTGDLNDVA-----WSRTTQLFLKISGLLDPRRGRGMFCTFHAGYPLLR 282
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+++ + + + ++ S H P+ I+
Sbjct: 283 WPLDHVFHSQH-----------FVLAGIRRLQNMGSDHFPILIDL 316
>gi|294629015|ref|ZP_06707575.1| membrane protein [Streptomyces sp. e14]
gi|292832348|gb|EFF90697.1| membrane protein [Streptomyces sp. e14]
Length = 346
Score = 36.3 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 26/115 (22%), Gaps = 21/115 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L + + V+ GD N +N Q G
Sbjct: 243 DQSADALGEAIADEALP--RVVLLGDLNGTMNDRSLNAVTAQMRSTQG----AVGNGFGF 296
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ +D ++ + S + S H P+
Sbjct: 297 SWPASFPMARIDQIMVRG-----VEPESSWTLPRTD----------SDHLPVAAR 336
>gi|228899360|ref|ZP_04063622.1| Sphingomyelinase C [Bacillus thuringiensis IBL 4222]
gi|228860266|gb|EEN04664.1| Sphingomyelinase C [Bacillus thuringiensis IBL 4222]
Length = 333
Score = 36.3 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 12/136 (8%), Positives = 32/136 (23%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I +I GD N + + ++ ++
Sbjct: 198 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENKNDSEYTSMFKTLNASVPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + S ++ + S+ Q
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTY 317
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDYSDHYPVEATISMK 333
>gi|229009858|ref|ZP_04167078.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides DSM 2048]
gi|228751476|gb|EEM01282.1| Endonuclease/exonuclease/phosphatase [Bacillus mycoides DSM 2048]
Length = 263
Score = 36.3 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + + GDFN ++ G + + L ++ ++
Sbjct: 156 DRLMERVNSNELSFLMGDFNNNARLEGEGYEYTMQKGLYDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S ++ S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKQNLRIDLILSNQSKTVNSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|224085233|ref|XP_002307521.1| predicted protein [Populus trichocarpa]
gi|222856970|gb|EEE94517.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 36.3 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 33/126 (26%), Gaps = 20/126 (15%)
Query: 13 ADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDP-----DGLLIRFPQEKESTCNV 65
+ I + GD N ++ + +K D L+ + +
Sbjct: 416 LPKNIYDHERIIWLGDLNYRINLSYDKTHELISRKEWSQLVEKDQLVRELRKGRAFDGWS 475
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSF-SIVSYDQSDLDTRRS------------KLSTHC 112
+ Y +K F D + + + KLS H
Sbjct: 476 EGTLNFAPTYKYEMNSDKYFGEDPKAGRRIPAWCDRILSYGKGMRLLNYRRTELKLSDHR 535
Query: 113 PLTIEY 118
P+T +
Sbjct: 536 PVTATF 541
>gi|218895728|ref|YP_002444139.1| sphingomyelin phosphodiesterase C [Bacillus cereus G9842]
gi|218542554|gb|ACK94948.1| sphingomyelin phosphodiesterase C [Bacillus cereus G9842]
Length = 333
Score = 36.3 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 12/136 (8%), Positives = 32/136 (23%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I +I GD N + + ++ ++
Sbjct: 198 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENKNDSEYTSMFKTLNASVPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + S ++ + S+ Q
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTY 317
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDYSDHYPVEATISMK 333
>gi|66825397|ref|XP_646053.1| hypothetical protein DDB_G0270886 [Dictyostelium discoideum AX4]
gi|60474856|gb|EAL72793.1| hypothetical protein DDB_G0270886 [Dictyostelium discoideum AX4]
Length = 663
Score = 36.3 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 13/97 (13%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN N+ + + + L
Sbjct: 135 IIAGDFNADHNNNSHYGIGIRSIIEESNLKDIGANNNIATFSRSN-----------SRLD 183
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ V + + S H P++I+
Sbjct: 184 RIYCKPTM--VGSNPLRVHEDIYNKSDHTPISIDLKM 218
>gi|4335717|gb|AAD17395.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1138
Score = 36.3 bits (82), Expect = 1.2, Method: Composition-based stats.
Identities = 11/106 (10%), Positives = 29/106 (27%), Gaps = 3/106 (2%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK---SSL 73
+ P+ + GDFN +++ + + + K N
Sbjct: 91 LNRKEPWCMLGDFNVILHNGEKRGGPRRGDSSFISFKDMLECCDMLELPSKGNPFSWGGK 150
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + N + S+ + + S P+ +
Sbjct: 151 RNSLWIQCRLDRCFGNKNWFRHFPVSNQEFLDKRGSDRRPVLVRLS 196
>gi|313158592|gb|EFR57986.1| endonuclease/exonuclease/phosphatase family protein [Alistipes sp.
HGB5]
Length = 320
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 12/121 (9%), Positives = 33/121 (27%), Gaps = 14/121 (11%)
Query: 15 QKIKTGIPFVIAGDFNR----------KINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q +++ GDFN + + + ++ +
Sbjct: 200 QSDAGQQLWMMMGDFNSRSRLDNRIYNYPDDDTRLLVHDYIAEHTPYVDVIAEKHPGEFH 259
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR----SKLSTHCPLTIEYDF 120
+S +D+ + + + D + S H P+ +++D
Sbjct: 260 TTTHGQSRIDFVYCTPPLCERITRAEVIADDFTEPVRDPGKLSNFYHPSDHRPILVDFDM 319
Query: 121 E 121
+
Sbjct: 320 K 320
>gi|299139581|ref|ZP_07032755.1| Endonuclease/exonuclease/phosphatase [Acidobacterium sp. MP5ACTX8]
gi|298598509|gb|EFI54673.1| Endonuclease/exonuclease/phosphatase [Acidobacterium sp. MP5ACTX8]
Length = 1327
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 37/134 (27%), Gaps = 29/134 (21%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD----------------- 47
Q E + K+ G + GDFN S G TD +
Sbjct: 798 QAEDIAKYIQTLQAAGKHVISGGDFNAFEFSDGYTDTLATYTNVNILPSDQVVQPGTAGL 857
Query: 48 ---PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK------NFLIDNSFSIVSYDQ 98
L + V + LD+ V+ + +D F + +Y+
Sbjct: 858 VTPSLVDLALNMAPSDRWSYVEDGDAQILDHMVVTPELAAGTQFVYAHLDADFPLTAYND 917
Query: 99 SDLDTRRSKLSTHC 112
+ + S H
Sbjct: 918 ATTPA---RTSDHD 928
>gi|191167014|ref|ZP_03028836.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli B7A]
gi|190902907|gb|EDV62634.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
coli B7A]
Length = 266
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 176 DQIAHHSGPVIMAGDFNA---------WSRRRMNALYRFAREMSLRQVRFTDDQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 227 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 260
>gi|147854417|emb|CAN78583.1| hypothetical protein VITISV_029931 [Vitis vinifera]
Length = 1875
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 15/105 (14%)
Query: 21 IPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
P+ I GDFN ++ + + ++ + L+ P + RN
Sbjct: 869 DPWCIGGDFNVVLSQRERSSQGRISGAMRRFAQVVDELELLDLPLQGGVFSWSGGRNNQ- 927
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ + +S H P+ ++
Sbjct: 928 -----AWARLDRFLVSQCWLDKCCGV-VQCRLPRPISDHFPIMLK 966
>gi|148556564|ref|YP_001264146.1| hypothetical protein Swit_3662 [Sphingomonas wittichii RW1]
gi|148501754|gb|ABQ70008.1| hypothetical protein Swit_3662 [Sphingomonas wittichii RW1]
Length = 351
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 5/119 (4%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + + P + GDFN + + D + P ++ R+ E + C
Sbjct: 226 RQSREASGFIAGVNEPAYPLIFGGDFNMRWSEERFAD--FSLYVPLEIVHRWCIEPDHGC 283
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS--KLSTHCPLTIEYDF 120
+V ++ +D + F + +I + + +LS H + Y+
Sbjct: 284 DVRMSWDGDEP-WMDTQDLQLFRSSPTVAIRPIRVEAMFDGGALPQLSDHDGFLVTYEL 341
>gi|114705074|ref|ZP_01437982.1| Endonuclease/exonuclease/phosphatase [Fulvimarina pelagi HTCC2506]
gi|114539859|gb|EAU42979.1| Endonuclease/exonuclease/phosphatase [Fulvimarina pelagi HTCC2506]
Length = 364
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 10/107 (9%), Positives = 20/107 (18%), Gaps = 16/107 (14%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ P ++ GD N + L+ + R
Sbjct: 235 REDSKPSIVCGDLNDVA-----WSHTTRLFQRLSQLLDPRVGRGFYNTFDARYPVLRWPL 289
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
F + + S H P+ +
Sbjct: 290 DHL-----------FHDEHFSLVTIRRCEHIKSDHFPIFFKLALTSS 325
>gi|18378941|ref|NP_563646.1| endonuclease/exonuclease/phosphatase family protein /
calcium-binding EF hand family protein [Arabidopsis
thaliana]
gi|148887024|sp|O81916|YC22_ARATH RecName: Full=Uncharacterized calcium-binding protein At1g02270
gi|15450673|gb|AAK96608.1| At1g02270/T6A9_9 [Arabidopsis thaliana]
gi|17380606|gb|AAL36066.1| At1g02270/T6A9_9 [Arabidopsis thaliana]
gi|332189287|gb|AEE27408.1| uncharacterized calcium-binding protein [Arabidopsis thaliana]
Length = 484
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 21/66 (31%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E+L+ + + +P ++ GD+N Q + ++ V
Sbjct: 239 EYLEAYQKENKLNHMPIILCGDWNGSKRGHVYKFLRSQGFISSYDDAHQYTDSDAHRWVS 298
Query: 67 KRNKSS 72
RN
Sbjct: 299 HRNHRG 304
>gi|326664792|ref|XP_003197888.1| PREDICTED: transposon TX1 uncharacterized 149 kDa protein-like
[Danio rerio]
Length = 1140
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 29/133 (21%), Gaps = 28/133 (21%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------------FWQKMDP 48
+++ E L+ + +PF++AGDFN + +
Sbjct: 118 NKRFELLED-IQPHMLGRVPFILAGDFNCVLTQKDRRRADDFKVDKTSVLLQGLVRDFKL 176
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
Q +E Y +D
Sbjct: 177 VDCFKAMHQREEGFTWFSGDGTR-------ASRIDYMFTR------DYPPTDAKLTPLFF 223
Query: 109 STHCPLTIEYDFE 121
S H L+
Sbjct: 224 SDHLMLSCTLSLP 236
>gi|326664776|ref|XP_003197882.1| PREDICTED: transposon TX1 uncharacterized 149 kDa protein-like
[Danio rerio]
Length = 1140
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 16/133 (12%), Positives = 29/133 (21%), Gaps = 28/133 (21%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------------FWQKMDP 48
+++ E L+ + +PF++AGDFN + +
Sbjct: 118 NKRFELLED-IQPHMLGRVPFILAGDFNCVLTQKDRRRADDFKVDKTSVLLQGLVRDFKL 176
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
Q +E Y +D
Sbjct: 177 VDCFKAMHQREEGFTWFSGDGTR-------ASRIDYMFTR------DYPPTDAKLTPLFF 223
Query: 109 STHCPLTIEYDFE 121
S H L+
Sbjct: 224 SDHLMLSCTLSLP 236
>gi|325845494|ref|ZP_08168785.1| exodeoxyribonuclease III [Turicibacter sp. HGF1]
gi|325488513|gb|EGC90931.1| exodeoxyribonuclease III [Turicibacter sp. HGF1]
Length = 215
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 9/79 (11%), Positives = 16/79 (20%), Gaps = 19/79 (24%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPD------------------GLLIRFPQEKES- 61
P ++ GD N I + + F KE+
Sbjct: 137 KPVIVCGDLNVAHQQIDLKNPKTNTKNAGFTIEERNEMTKLLNSGFIDTFRYFYPTKENC 196
Query: 62 TCNVIKRNKSSLDYFVIDR 80
R + +
Sbjct: 197 YSWWSYRAGARAKKRWMAY 215
>gi|315921153|ref|ZP_07917393.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313695028|gb|EFS31863.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 269
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 28/109 (25%), Gaps = 16/109 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
++ P ++ GDFN +S + + + T
Sbjct: 176 LEKTKGMDAPMILTGDFNALADSGP-----MKILYERFDIGCLNGNYGLTTGT------- 223
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
V D + D + +YD S H P+ +
Sbjct: 224 -PVPVKAIDFVLYTPDKGMAPKAYDVYYDAYVE---SDHFPVVATFSIN 268
>gi|298373624|ref|ZP_06983613.1| endonuclease/Exonuclease/phosphatase family protein [Bacteroidetes
oral taxon 274 str. F0058]
gi|298274676|gb|EFI16228.1| endonuclease/Exonuclease/phosphatase family protein [Bacteroidetes
oral taxon 274 str. F0058]
Length = 339
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 12/145 (8%), Positives = 30/145 (20%), Gaps = 32/145 (22%)
Query: 6 GEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+L++ D I +I GDFN ++ G ++ +
Sbjct: 192 ARYLREAVDSLFGINDKAKVLILGDFNDMPDNNSIVKVLGANPFSAGTTQVVDRKLYNIT 251
Query: 64 NVIKRNKSS-LDYFVIDRDNKNFLIDNSFSI----------------------------- 93
+ + ++ +
Sbjct: 252 YKFHKEGRGTYRFQQQWNMLDQIIVSGALLQGGGKTEILEKSTRIFSPEWLLEDDKPTGK 311
Query: 94 VSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S H P+ ++
Sbjct: 312 RPFRTYIGMRYNGGFSDHLPVLVDI 336
>gi|283783993|ref|YP_003363858.1| hypothetical protein ROD_02141 [Citrobacter rodentium ICC168]
gi|282947447|emb|CBG86994.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
Length = 266
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 176 DQIAHHSGPVIMAGDFNA---------WSRRRMNALYRFAREMSLRQVRFTDDQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 227 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 260
>gi|260172870|ref|ZP_05759282.1| Endonuclease/exonuclease/phosphatase [Bacteroides sp. D2]
Length = 277
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 28/109 (25%), Gaps = 16/109 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
++ P ++ GDFN +S + + + T
Sbjct: 184 LEKTKGMDAPMILTGDFNALADSGP-----MKILYERFDIGCLNGNYGLTTGT------- 231
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
V D + D + +YD S H P+ +
Sbjct: 232 -PVPVKAIDFVLYTPDKGMAPKAYDVYYDAYVE---SDHFPVVATFSIN 276
>gi|238502697|ref|XP_002382582.1| endonuclease/exonuclease/phosphatase family protein [Aspergillus
flavus NRRL3357]
gi|220691392|gb|EED47740.1| endonuclease/exonuclease/phosphatase family protein [Aspergillus
flavus NRRL3357]
Length = 438
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 35/122 (28%), Gaps = 9/122 (7%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--QKMDPDGLLIRFPQEKESTCN 64
+ + + G ++ GD N + S G+ + ++ + + E T
Sbjct: 168 QQVADYIG-NNSAGNAVLVFGDTNARYTSSGENIRVFGTEQNMTNPWVELILNGVEPTEG 226
Query: 65 VIKRNKSSLDYFVIDRDNKNFLID------NSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S + SY + + LS H P+T +
Sbjct: 227 TDPWMCDNPTTNNTCETVDKIFYRGSRSIELSATFWSYVGTKFELDGHILSDHNPVTSNF 286
Query: 119 DF 120
+
Sbjct: 287 TW 288
>gi|148554033|ref|YP_001261615.1| hypothetical protein Swit_1111 [Sphingomonas wittichii RW1]
gi|148499223|gb|ABQ67477.1| hypothetical protein Swit_1111 [Sphingomonas wittichii RW1]
Length = 351
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 32/114 (28%), Gaps = 5/114 (4%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ L ++ G+P ++ GDFN S + +
Sbjct: 225 FRQQVAALDRFLAANHVPGMPMIVGGDFNIG-RSAARRTMVMEVLARHHGTAPADALSAC 283
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD----TRRSKLSTH 111
T + + FLI + + ++ + S LS H
Sbjct: 284 TGVCRDGLSADAREARRRAKDWQFLIPGAAADLTVRRIATPFGREADGSMLSDH 337
>gi|90579026|ref|ZP_01234836.1| hypothetical protein VAS14_04953 [Vibrio angustum S14]
gi|90439859|gb|EAS65040.1| hypothetical protein VAS14_04953 [Vibrio angustum S14]
Length = 379
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 11/128 (8%), Positives = 29/128 (22%), Gaps = 25/128 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMD----------PDGLLIRFPQEKESTCNVI 66
+K F++ GD N I+ + + + +
Sbjct: 249 LKPDDAFIVMGDLNADIDDGDGFKAAIKHLLKLDKINTRVSSGKQTPKSEGARHYYPWQK 308
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ------------SDLDTRRSKLS---TH 111
+ + + + L + ++ R K S H
Sbjct: 309 RTGRKNEWTHLAGLRLDYVLPSKNLDVIETGVFWPDKHDSLRELILDCKGREKPSAGSDH 368
Query: 112 CPLTIEYD 119
+ + +
Sbjct: 369 RMVWADIN 376
>gi|32472396|ref|NP_865390.1| hypothetical protein RB3242 [Rhodopirellula baltica SH 1]
gi|32443632|emb|CAD73074.1| hypothetical protein-transmembrane prediction [Rhodopirellula
baltica SH 1]
Length = 439
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 1/107 (0%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
FVIAGD N + + + + +
Sbjct: 329 LKSDSSADAMFVIAGDLNSDPKQGDSLRSGITNLISNPRVRDAMPTSSQHGISTAKFGRN 388
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ N + S + Q+DL +R + + H + I+ +
Sbjct: 389 EIRVDYVLPSSNLHVIRSAVVWPDAQTDLG-KRVRATDHRMIWIDIE 434
>gi|293413464|ref|ZP_06656113.1| yafD protein [Escherichia coli B185]
gi|291433522|gb|EFF06495.1| yafD protein [Escherichia coli B185]
Length = 266
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 176 DQIAHHSGPVIMAGDFNA---------WSRRRMNALYRFAREMSLRQVRFTDDQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 227 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 260
>gi|254508663|ref|ZP_05120778.1| conserved hypothetical protein [Vibrio parahaemolyticus 16]
gi|219548420|gb|EED25430.1| conserved hypothetical protein [Vibrio parahaemolyticus 16]
Length = 290
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 32/119 (26%), Gaps = 20/119 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
L + + P ++AGDFN S Q +D G+ Q T V
Sbjct: 188 RQLDTLVTELLNHQGPIIVAGDFNSW--SDARLSVMKQALDKIGVTEVTYQVDNRTQFVT 245
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
LD+ S H P+ + + + +V
Sbjct: 246 ---GLPLDHVFYRDLVLQKAEAPITD---------------ASDHNPIEVSFRLKNNDV 286
>gi|163796022|ref|ZP_02189985.1| Endonuclease/exonuclease/phosphatase [alpha proteobacterium BAL199]
gi|159178777|gb|EDP63315.1| Endonuclease/exonuclease/phosphatase [alpha proteobacterium BAL199]
Length = 248
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 10/116 (8%), Positives = 24/116 (20%), Gaps = 20/116 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + ++ +P V+ GD N +
Sbjct: 133 RRQARAVLMTLEA-LEEPLPTVMMGDLN---------EWTLGGGCLAMFAKHHHVAVPGQ 182
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+R + + + + S H P+
Sbjct: 183 SFHSRR---------PIATLDRIITSLDLRVEDAGVH-VSAKSRVASDHLPVWASI 228
>gi|150397136|ref|YP_001327603.1| endonuclease/exonuclease/phosphatase [Sinorhizobium medicae WSM419]
gi|150028651|gb|ABR60768.1| Endonuclease/exonuclease/phosphatase [Sinorhizobium medicae WSM419]
Length = 368
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 11/89 (12%), Positives = 22/89 (24%), Gaps = 9/89 (10%)
Query: 40 DDFWQK--MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY- 96
+ ++ +D L E+ C + S + +
Sbjct: 279 NPMLRRPVLDRWTLFHSRGPEERHLCQLDYIWLSQELARRNAARVPEVIRAGQPYRTIFP 338
Query: 97 ---DQSDLDTRRS---KLSTHCPLTIEYD 119
+ K S HCP+ + D
Sbjct: 339 AGQEVERYPRTGWDRPKASDHCPVVMTLD 367
>gi|57863912|gb|AAW56933.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1750
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 21 IPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
++ GDFN + + + ++ I + +E + SS
Sbjct: 226 EELLVVGDFNLLASEGDKNNGNVNRRLINKFRQTIDVLELREVYQFRRRYTWSSEQEQPT 285
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
LI+ + + + + L S S HCPL +
Sbjct: 286 LTKIDKVLINGEWEEI-FQDAHLQALSSSASDHCPLLL 322
>gi|30248098|ref|NP_840168.1| hypothetical protein NE0067 [Nitrosomonas europaea ATCC 19718]
gi|30179983|emb|CAD83978.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
Length = 274
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 14/110 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
SQQ E ++K Q + P V+AGDFN + + + + K +
Sbjct: 170 SQQLEAIEKRIRQLVSPDAPLVVAGDFNDWRGAA---NPLLASRLNLVEVFQHTHGKAAR 226
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ I V Q + S++S H
Sbjct: 227 SFPS---------VLPLLRLDRIYIRGF--QVKNAQILHNRPWSRISDHA 265
>gi|312172981|emb|CBX81236.1| hypothetical protein EAIL5_2416 [Erwinia amylovora ATCC BAA-2158]
Length = 372
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 26/105 (24%), Gaps = 16/105 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
P ++ GD N Q L+ + + C
Sbjct: 228 KSVASAAQPVIVTGDLNDVA-----WSRTTQLFLKISGLLDPRRGRGMFCTFHAGYPILR 282
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+++ + + + ++ S H P+ I+
Sbjct: 283 WPLDHVFHSQH-----------FVLAGIRRLQNMGSDHFPILIDL 316
>gi|328541790|ref|YP_004301899.1| endonuclease/exonuclease/phosphatase family [polymorphum gilvum
SL003B-26A1]
gi|326411542|gb|ADZ68605.1| Endonuclease/exonuclease/phosphatase family [Polymorphum gilvum
SL003B-26A1]
Length = 323
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 34/129 (26%), Gaps = 13/129 (10%)
Query: 5 QGEWLKKWADQKIKTGIPFVIA--GDFNRKINSIGDTDDFWQKMDPDGLL---------I 53
Q L+ D +IA GDFN D
Sbjct: 195 QALELRLAIDALFDADPEALIAAAGDFNAVGLESPLRLVMADPDDTGNPALGHRRLRQLD 254
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTH 111
E+ V + +LD+ ++ R+ D + D T S H
Sbjct: 255 AAVPEERRQTVVHRGRGHALDHILVSRELLFRARDIRVLNEGLADEVRDAGTPAEAGSFH 314
Query: 112 CPLTIEYDF 120
P+ ++
Sbjct: 315 APVVATFEL 323
>gi|319938670|ref|ZP_08013034.1| RgfB protein [Streptococcus anginosus 1_2_62CV]
gi|319811720|gb|EFW07986.1| RgfB protein [Streptococcus anginosus 1_2_62CV]
Length = 271
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 14/107 (13%), Positives = 26/107 (24%), Gaps = 2/107 (1%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ ++ +P V+ GDFN + G + + V +
Sbjct: 167 KELLQRDMPLVLMGDFNNPVGYEGYQYILKSPLALQDSHAVAATVVGTAT-VEGDIAGWV 225
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
F++ +S H L E F
Sbjct: 226 GNKD-ALKIDYIFTSKDFNVKKSAVVFDGKATPVVSDHFGLEAEVAF 271
>gi|149177784|ref|ZP_01856384.1| Endonuclease/exonuclease/phosphatase [Planctomyces maris DSM 8797]
gi|148843434|gb|EDL57797.1| Endonuclease/exonuclease/phosphatase [Planctomyces maris DSM 8797]
Length = 375
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 30/120 (25%), Gaps = 20/120 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-DDFWQKMDPDGLLIRFPQEKES 61
+ E + +++ ++ GD N S + ++
Sbjct: 239 KRDAELV--LVGREVSKNRSAIVLGDLNDVGWSRTTNLFQEVSGLLDPRKGRGLFATYDA 296
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
T + + + + F + S H PL +E +E
Sbjct: 297 TSWIWRY------------PLDYLFVSDDFRLSEIRTLPYI-----GSDHFPLLVELSYE 339
>gi|145299717|ref|YP_001142558.1| hypothetical protein ASA_2792 [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142852489|gb|ABO90810.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 281
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 24/118 (20%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L + P ++AGDFN + + + GL +E+
Sbjct: 182 FREQLNDLTALIRRHQG---PVILAGDFNTWSDKREFW--LNKLVGELGL-------QEA 229
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R + + + VS +D S H P+ +
Sbjct: 230 IPVPDLRRTAFGRPLDH-----LYYRNLDLVEVSSPATD-------ASDHNPIMARFS 275
>gi|67606491|ref|XP_666752.1| dna-(apurinic or apyrimidinic site) lyase [Cryptosporidium hominis
TU502]
gi|54657802|gb|EAL36520.1| dna-(apurinic or apyrimidinic site) lyase [Cryptosporidium hominis]
Length = 498
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 32/145 (22%), Gaps = 47/145 (32%)
Query: 21 IPFVIAGDFNRKINSIGDTDD--------------------------------------- 41
++AGDFN + I DD
Sbjct: 238 RNVILAGDFNIILEKIDCYDDCGILDNCKLAPCVLKNTKEILETSSFAKAYMHMRRMNIE 297
Query: 42 FWQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ + + + N+S + D + + D
Sbjct: 298 MIKGYCLVDAYRHYYPRTNNKYTCWSQMNQSRIRNQGTRIDLFLVSKGLISESIKCEILD 357
Query: 101 LDTRRSKLSTHCPLTIEY---DFEK 122
S HCP+ + +FE
Sbjct: 358 HIYG----SDHCPILLILKTGEFES 378
>gi|312602724|ref|YP_004022569.1| endonuclease/Exonuclease/phosphatase family protein [Burkholderia
rhizoxinica HKI 454]
gi|312170038|emb|CBW77050.1| Endonuclease/Exonuclease/phosphatase family protein [Burkholderia
rhizoxinica HKI 454]
Length = 273
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 12/118 (10%), Positives = 27/118 (22%), Gaps = 22/118 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP-DGLLIRFPQEKES 61
+ + ++ + +P ++ GD N + + + G R P +
Sbjct: 137 ERSAQ-VRTLLAAFDSSALPVILLGDIN-------EWFVHGRALRALVGHFRRAPAPRTF 188
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++ R S H PL
Sbjct: 189 PARW------------PILSLDRIWVHPGEWLIDVQVHRSALARV-ASDHLPLIARIR 233
>gi|260170324|ref|ZP_05756736.1| Endonuclease/exonuclease/phosphatase [Bacteroides sp. D2]
Length = 297
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 28/119 (23%), Gaps = 20/119 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-TDDFWQKMDPDGLLIRFPQEKES 61
+ L K K P GDFN ++ T + D Q
Sbjct: 196 KHACQMLVDAVSDKAKDNTPAFCTGDFNATPDAPEIATTICQSGILKDAYREAAVQHGAL 255
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP--LTIEY 118
+ ++ + + S LS H P + +E
Sbjct: 256 FTFPS-----------KKTRIDFIFVKHATVLSTRTIV------SSLSDHYPMVIVVEI 297
>gi|150866588|ref|XP_001386237.2| hypothetical protein PICST_49245 [Scheffersomyces stipitis CBS
6054]
gi|149387844|gb|ABN68208.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 318
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 28/121 (23%), Gaps = 21/121 (17%)
Query: 22 PFVIAGDFNRKINSIGDTDD---FWQKMDPDGLLIRFPQEKESTCN-------------- 64
P + GDFN + + F R+ EK S
Sbjct: 195 PSFLCGDFNTEPDDAAFKQLEESFSDVSTLSTPFNRYGHEKSSVTGFEGEVLLQGGQSID 254
Query: 65 ----VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
K S D + + + S +S H P+ ++
Sbjct: 255 YIFAPKYTAKMSDKPQCDSIDVNSAANKLFLRLQGFGMLHSKFGGSYMSDHRPIVADFSL 314
Query: 121 E 121
Sbjct: 315 S 315
>gi|15597352|ref|NP_250846.1| hypothetical protein PA2156 [Pseudomonas aeruginosa PAO1]
gi|9948174|gb|AAG05544.1|AE004642_11 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Length = 245
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 16/117 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + L + + P V+AGDFN ++ L +
Sbjct: 144 QRQLQLLCELVAG-LPEREPVVVAGDFND-------WRQRADRLLAGCGLREVFVGAQG- 194
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R S + N+ S S LS H PL +E +
Sbjct: 195 -----RPARSFPARWPVLPLDRIYLRNARGRQPRILSRRPW--SHLSDHLPLAVEVE 244
>gi|66820188|ref|XP_643730.1| hypothetical protein DDB_G0275221 [Dictyostelium discoideum AX4]
gi|60471937|gb|EAL69891.1| hypothetical protein DDB_G0275221 [Dictyostelium discoideum AX4]
Length = 1208
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 22/96 (22%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN N DD Q Q + +
Sbjct: 156 IIAGDFNCIHNDNSLLDDIIQSY--TYQHHLIDQGEFKNTPTHTHGNRLDRIYTQYNRID 213
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + LS H P++
Sbjct: 214 PENIYTQVHQIPSS----------LSDHNPISTTIS 239
>gi|321449801|gb|EFX62081.1| hypothetical protein DAPPUDRAFT_337474 [Daphnia pulex]
Length = 441
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 30/108 (27%), Gaps = 7/108 (6%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN-KS 71
+ + P+++ GDFN + + + C + N +
Sbjct: 126 IEAMLDRSNPYLLGGDFN---GHHPLWESNATVNKAGKSVYEALINDQDACLITPPNLGT 182
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
LD + I + S + S H P+ I +
Sbjct: 183 RLDPVSGKASTIDLTITAASIATSAKITLGPFMG---SDHLPIIITLN 227
>gi|292488822|ref|YP_003531709.1| hypothetical protein EAMY_2351 [Erwinia amylovora CFBP1430]
gi|292899974|ref|YP_003539343.1| endonuclease/exonuclease/phosphatase [Erwinia amylovora ATCC 49946]
gi|291199822|emb|CBJ46945.1| putative endonuclease/exonuclease/phosphatase [Erwinia amylovora
ATCC 49946]
gi|291554256|emb|CBA21556.1| hypothetical protein EAMY_2351 [Erwinia amylovora CFBP1430]
Length = 372
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 26/105 (24%), Gaps = 16/105 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
P ++ GD N Q L+ + + C
Sbjct: 228 KSVASAAQPVIVTGDLNDVA-----WSRTTQLFLKISGLLDPRRGRGMFCTFHAGYPILR 282
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+++ + + + ++ S H P+ I+
Sbjct: 283 WPLDHVFHSQH-----------FVLAGIRRLQNMGSDHFPILIDL 316
>gi|302664446|ref|XP_003023853.1| DNA lyase Apn2 [Trichophyton verrucosum HKI 0517]
gi|291187871|gb|EFE43235.1| DNA lyase Apn2 [Trichophyton verrucosum HKI 0517]
Length = 588
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 12/108 (11%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P GD + S D ++ P + ++ S +DY +
Sbjct: 202 RPVGSTGDTHDT-ESPPVLRDLCREFHPSRTGMYTCWNQKVNARP-GNYGSRIDYILCSD 259
Query: 81 DNKNFLIDNSFSI----------VSYDQSDLDTRRSKLSTHCPLTIEY 118
+ +++ ++++ +S ++L + S HCP+
Sbjct: 260 NIRSWFVESNIQEGLIVCVKFGLISPSFNNLLIPNEQGSDHCPVYASI 307
>gi|227114004|ref|ZP_03827660.1| endonuclease/exonuclease/phosphatase family protein [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 381
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 36/140 (25%), Gaps = 23/140 (16%)
Query: 3 SQQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSI-GDTDDFWQKMDPDGLLIRFPQEKE 60
Q E + + Q VI GD N ++ + D ++ EKE
Sbjct: 240 RDQAERVAEIVQQTYDLKKDYVVILGDLNEDSSNPWHSLAPLFSLSDLHPVIDPERPEKE 299
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV------SYDQSDLDTR---------- 104
K +D + + + Y+ + +
Sbjct: 300 RYTYYFSGGKKGARLNQLDYIFLSAPLHQAVVEWGVERRGIYNIDKIAAKEGAEPVTPLP 359
Query: 105 -----RSKLSTHCPLTIEYD 119
+ S H L +E D
Sbjct: 360 EVTSWDTAASDHAALWVEVD 379
>gi|169601596|ref|XP_001794220.1| hypothetical protein SNOG_03666 [Phaeosphaeria nodorum SN15]
gi|111067751|gb|EAT88871.1| hypothetical protein SNOG_03666 [Phaeosphaeria nodorum SN15]
Length = 1207
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 31/123 (25%), Gaps = 17/123 (13%)
Query: 14 DQKIKTGIPFVIAGDFNR----------------KINSIGDTDDFWQKMDPDGLLIRFPQ 57
++ I+ + GDFN + ++ + D +M + +
Sbjct: 789 NRSIEDHDTVIWFGDFNYRIGLSNEKVQKLCHVGDLETLYENDQLNLQMVAGLTFPYYSE 848
Query: 58 EKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + S + + Q D + S H P+
Sbjct: 849 ARITFPPTYKYDLNSDTYDTSEKARIPAWCDRVLRKGDNIRQIHYDAAPLRFSDHRPVYA 908
Query: 117 EYD 119
+
Sbjct: 909 TFQ 911
>gi|42569699|ref|NP_181280.3| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
thaliana]
gi|110743787|dbj|BAE99729.1| hypothetical protein [Arabidopsis thaliana]
gi|330254305|gb|AEC09399.1| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
Length = 479
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 25/135 (18%)
Query: 15 QKIKTGIPFVIAGDFN-------RKINSIGDTDDF-------WQKMDPDGLLIRFPQEKE 60
+ I + GD N + + D + G + + +E +
Sbjct: 294 ETIMDHDKVIWLGDLNYRLRASSDLHEQLRNHDWESLLEKDQLKIEQRAGRIFKGWEEGK 353
Query: 61 STCNVIKRNKSSLDY-------FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ + + D R + + Q SK S H P
Sbjct: 354 IYFAPTYKYRINSDNYVVQTEKSKEKRRTPAWCDRILWKGDGMKQLWYVRGESKFSDHRP 413
Query: 114 L----TIEYDFEKGN 124
+ ++ D + +
Sbjct: 414 VQSLFSVHIDLKNQS 428
>gi|169776017|ref|XP_001822475.1| endonuclease/exonuclease/phosphatase family protein [Aspergillus
oryzae RIB40]
gi|83771210|dbj|BAE61342.1| unnamed protein product [Aspergillus oryzae]
Length = 438
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 35/122 (28%), Gaps = 9/122 (7%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--QKMDPDGLLIRFPQEKESTCN 64
+ + + G ++ GD N + S G+ + ++ + + E T
Sbjct: 168 QQVADYIG-NNSAGNAVLVFGDTNARYTSSGENIRVFGTEQNMTNPWVELILNGVEPTEG 226
Query: 65 VIKRNKSSLDYFVIDRDNKNFLID------NSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S + SY + + LS H P+T +
Sbjct: 227 TDPWMCDNPTTNNTCETVDKIFYRGSRSIELSATFWSYVGTKFELDGHILSDHNPVTSNF 286
Query: 119 DF 120
+
Sbjct: 287 TW 288
>gi|260642545|ref|ZP_05416298.2| endonuclease/Exonuclease/phosphatase family protein [Bacteroides
finegoldii DSM 17565]
gi|260621683|gb|EEX44554.1| endonuclease/Exonuclease/phosphatase family protein [Bacteroides
finegoldii DSM 17565]
Length = 336
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 14/147 (9%), Positives = 31/147 (21%), Gaps = 29/147 (19%)
Query: 1 MLSQQGEWLKKWADQKIKTGIP---FVIAGDFNRKINSIGDTDDFWQKMDPDGL------ 51
+ + + K I P +I GD N N+ +
Sbjct: 185 IYREAAAAITKHIADSIHAADPNAKVLIVGDLNDDPNNKSTKEVLKACRKAADTKPDGYF 244
Query: 52 -LIRFPQEKESTCNVIKRNKSSLD------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
++ + + D + + + + R
Sbjct: 245 NATWPLFDRGIGSLCYQDKWNLFDQLIISGNLLGKDRSTLKFWKAEIFNRDFLTTQEGKR 304
Query: 105 RSKL-------------STHCPLTIEY 118
+ S H P+ I +
Sbjct: 305 KGYPWRTFSSNTFINGYSDHFPVLIYF 331
>gi|170767829|ref|ZP_02902282.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
albertii TW07627]
gi|170123317|gb|EDS92248.1| endonuclease/exonuclease/phosphatase family protein [Escherichia
albertii TW07627]
Length = 266
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 176 DQIAHHSGPVIMAGDFNA---------WSRRRMNALYRFAREMSLRQVRFTDDQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 227 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 260
>gi|111018178|ref|YP_701150.1| transmembrane protein [Rhodococcus jostii RHA1]
gi|110817708|gb|ABG92992.1| possible transmembrane protein [Rhodococcus jostii RHA1]
Length = 321
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 11/116 (9%), Positives = 29/116 (25%), Gaps = 14/116 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
S++ + +K D P +++GDFN + + + +
Sbjct: 216 SREMDRIKAILDAVPADSGPVIVSGDFNSTRDHVKYRNLV--------TGRYRDAADQVG 267
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + + + + S H L +
Sbjct: 268 AGIQNTYPADRQPLPPMIAIDHIVTSGAQAQSVESVV------LTGSDHRGLIAKI 317
>gi|108758427|ref|YP_630443.1| endonuclease/exonuclease/phosphatase family protein [Myxococcus
xanthus DK 1622]
gi|108462307|gb|ABF87492.1| endonuclease/exonuclease/phosphatase family protein [Myxococcus
xanthus DK 1622]
Length = 325
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 27/118 (22%), Gaps = 17/118 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E L + + P ++ GD N + ++ C
Sbjct: 224 RQAEAL---VRRYARWRGPVLVLGDMNEGRSGKAMKAFASAG------FQHACDGPDAAC 274
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + S R+ S H + DF
Sbjct: 275 GATW--------PGTASVLPSVVEIDHVLGRELRLSGAKVLRAGGSDHDAVRATLDFP 324
>gi|19704226|ref|NP_603788.1| DNAse I homologous protein DHP2 precursor [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296328862|ref|ZP_06871373.1| DNAse I family protein DHP2 [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|19714452|gb|AAL95087.1| DNAse I homologous protein DHP2 precursor [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296153983|gb|EFG94790.1| DNAse I family protein DHP2 [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 279
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 5/106 (4%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + K IAGDFN ++ D + ++T R
Sbjct: 170 DYFQDRDKKENDIFIAGDFNLYALDESFK-PLYKH--SDKITYAIDPAIKTTIGTKGRAN 226
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S + S + + + R +S H P+ I
Sbjct: 227 SYD--NFFFSQKYSQEFTGSSGALDFSGDNPKQMREIISDHIPVFI 270
>gi|327284457|ref|XP_003226954.1| PREDICTED: type II inositol-1,4,5-trisphosphate 5-phosphatase-like
[Anolis carolinensis]
Length = 867
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 34/123 (27%), Gaps = 21/123 (17%)
Query: 17 IKTGIPFVIAGDFNRKINSIGD-----------------TDDFWQKMDPDGLLIRFPQEK 59
I + GD N ++ D ++M+ + F + +
Sbjct: 386 IAKHDVVLWLGDLNYRLEEQDVERVKKLVEARDFRTLQQHDQLKRQMEAKAVFEGFTEGE 445
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS---KLSTHCPLTI 116
+ + + + + + S L R K+S H P++
Sbjct: 446 ITF-QPTYKYNPGCNDWDTSEKCRVPAWCDRILFKGRSVSQLSYRSHPALKISDHKPVSA 504
Query: 117 EYD 119
+D
Sbjct: 505 CFD 507
>gi|312371109|gb|EFR19370.1| hypothetical protein AND_22625 [Anopheles darlingi]
Length = 533
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 4/102 (3%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+ V+ GDFN +S ++ + ++ + ++R + Y
Sbjct: 375 NNVQLVLCGDFNSLPDSGVIEFLSAGRVS----MDHQDFKELGYKSCLQRIIDYIFYSKQ 430
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
L S + ++ S H PL +E +
Sbjct: 431 GMVPLGLLGPISSDWLRENKVVGCPHPHIPSDHFPLLVELEL 472
>gi|212541981|ref|XP_002151145.1| transcription factor, putative [Penicillium marneffei ATCC 18224]
gi|210066052|gb|EEA20145.1| transcription factor, putative [Penicillium marneffei ATCC 18224]
Length = 685
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 23/125 (18%), Gaps = 25/125 (20%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL----------------------IRFP 56
IP +I GDFN +
Sbjct: 541 DQIPLLICGDFNSAPGEAAYNLLAHGGLTEAHPDLEKRLYGNLSRVGMTHPFKLKSAYSA 600
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCPL 114
+ S N S LDY + Y S H L
Sbjct: 601 IGELSFTNYTPDFNSILDYIWFSSTALHVTGLLGEVDKEYLQRVPGFPNY-HFPSDHLAL 659
Query: 115 TIEYD 119
E+
Sbjct: 660 LAEFS 664
>gi|156385552|ref|XP_001633694.1| predicted protein [Nematostella vectensis]
gi|156220767|gb|EDO41631.1| predicted protein [Nematostella vectensis]
Length = 627
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 9/91 (9%), Positives = 20/91 (21%), Gaps = 1/91 (1%)
Query: 26 AGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNF 85
G F + ++ + + + D I +
Sbjct: 326 CGFFGVAPGTSFLSNPIAMSTFQKDTIFTNVAKTSDGDFWWEGLNPPADGIKIRSWLGDP 385
Query: 86 LIDNSFSIVSYDQSDLDTRRS-KLSTHCPLT 115
+ + + R S HCP+
Sbjct: 386 DWKPEVAGKTRKTAAHPNSRFCAPSDHCPIM 416
>gi|94676641|ref|YP_588914.1| hypothetical protein BCI_0476 [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
gi|94219791|gb|ABF13950.1| endonuclease/exonuclease/phosphatase family protein [Baumannia
cicadellinicola str. Hc (Homalodisca coagulata)]
Length = 278
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 21/107 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
D ++ P ++AGDFN + + +L K+ V R +
Sbjct: 177 DHILQHHGPVIMAGDFNTWSK---KRILALYRFTDNMMLKEVVFTKDLRKRVFGRPLDFI 233
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
Y + ++ +K S H PL + +D
Sbjct: 234 FYRNMH------------------VTEASVLVTKASDHNPLLVTFDL 262
>gi|22208464|gb|AAM94293.1| putative reverse transcriptase [Sorghum bicolor]
Length = 1323
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 17/109 (15%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTD--------DFWQKMDPDGLLIRFPQEKESTCNVIKR 68
G P++ GDFN + + +++ L+ + R
Sbjct: 326 QPRGRPWLCLGDFNLICEAQDKNNNNINRAHMRKFRQALDASELLEIKLQNRKYTWSNGR 385
Query: 69 NKSSLDYFVIDRD-NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+L + I S L S LS HCPL +
Sbjct: 386 KNPTLVHLDRAFCNLDWDEIFPSA--------TLIALSSSLSDHCPLFL 426
>gi|70987454|ref|XP_749140.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Aspergillus fumigatus Af293]
gi|66846770|gb|EAL87102.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Aspergillus fumigatus Af293]
gi|159123088|gb|EDP48208.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Aspergillus fumigatus A1163]
Length = 1160
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 32/125 (25%), Gaps = 17/125 (13%)
Query: 14 DQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQK----MDPDGLLIRFPQEKESTCNVI- 66
++ I + GDFN +++ D Q+ + + L
Sbjct: 774 NRTIDDHDTIIWLGDFNYRIGLSNQTVRDLAAQRNYQRLHDNDQLNLQMMAGNVFQFYSE 833
Query: 67 ----------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ + + + Q D+ + S H P+
Sbjct: 834 GLISFPPTYKYDVGTNYYDTSEKSRIPAWCDRILWKGSNIHQLHYDSACLQCSDHRPVWA 893
Query: 117 EYDFE 121
+ +
Sbjct: 894 VFSCD 898
>gi|46123027|ref|XP_386067.1| hypothetical protein FG05891.1 [Gibberella zeae PH-1]
Length = 1225
Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats.
Identities = 9/83 (10%), Positives = 22/83 (26%), Gaps = 7/83 (8%)
Query: 39 TDDFWQKMDPDGLLIRFPQEKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ D + I F + + + +
Sbjct: 1082 RNPAFKLRAFDEMPITFAPTYKYDVGTDNYDSSEKRRSPAWCDRLLHRGRG------RIE 1135
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
Q D ++S H P+T ++
Sbjct: 1136 QFDYRRHEVRVSDHRPVTGTFNL 1158
>gi|317490803|ref|ZP_07949239.1| endonuclease/Exonuclease/phosphatase [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920350|gb|EFV41673.1| endonuclease/Exonuclease/phosphatase [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 261
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 21/105 (20%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q P ++AGDFN Q+++ + +E R +
Sbjct: 175 EQIALHKGPVIMAGDFNA---------WSKQRINALQRFASGMELQEVNFTNDHRRTAFG 225
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+++ S + + S H PL +++
Sbjct: 226 RPLDFVFYRGLGVVEASVLVT------------QASDHNPLLVDF 258
>gi|300772811|ref|ZP_07082681.1| possible secreted protein [Sphingobacterium spiritivorum ATCC
33861]
gi|300761114|gb|EFK57940.1| possible secreted protein [Sphingobacterium spiritivorum ATCC
33861]
Length = 269
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 19/116 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q +L + + Q P +I GD+N + NS+ T+
Sbjct: 173 QATFLNELSVQL---NKPIMIGGDYNAESNSVELTEL-------RKQYTLSCVNGCPNSF 222
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++ ++D+ ++ S ++ S S H P+ Y++
Sbjct: 223 PVRNPTKAIDFVASNKLAVQQYSLLSAVALT---------GSYASDHLPVVAIYNY 269
>gi|294897088|ref|XP_002775817.1| Craniofacial development protein, putative [Perkinsus marinus ATCC
50983]
gi|239882170|gb|EER07633.1| Craniofacial development protein, putative [Perkinsus marinus ATCC
50983]
Length = 669
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 13/122 (10%), Positives = 34/122 (27%), Gaps = 15/122 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD--------FWQKMDPDGLLIRFPQEKESTCN 64
++ ++ P ++ GDFN ++ S D +++ + +G + +
Sbjct: 221 VEEVVRLERPEIVCGDFNARLGSDLARDPIHGLGKAYAYEETNDNGWRLVMLAAASHMGH 280
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------STHCPLTIE 117
+ + L ++ S HC L +
Sbjct: 281 AASHFLKPQTHLGTWHSPVEKCWHQLDHFLIRSNRKLQVLDVRVRRTVMGSSDHCALELS 340
Query: 118 YD 119
+
Sbjct: 341 FR 342
>gi|227538193|ref|ZP_03968242.1| endonuclease/exonuclease/phosphatase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241962|gb|EEI91977.1| endonuclease/exonuclease/phosphatase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 269
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 19/116 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q +L + + Q P +I GD+N + NS+ T+
Sbjct: 173 QATFLNELSVQL---NKPIMIGGDYNAESNSVELTEL-------RKQYTLSCVNGCPNSF 222
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++ ++D+ ++ S ++ S S H P+ Y++
Sbjct: 223 PVRNPTKAIDFVASNKLAVQQYSLLSAVALT---------GSYASDHLPVVAIYNY 269
>gi|182439049|ref|YP_001826768.1| hypothetical protein SGR_5256 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178467565|dbj|BAG22085.1| putative membrane protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 341
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 12/116 (10%), Positives = 26/116 (22%), Gaps = 21/116 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ L + + V+ GD N +N Q G +
Sbjct: 247 SADALGEAIAD--ERVERVVLLGDLNGTMNDRSLNAVTAQMRSTQG----AAGDGFGFSW 300
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +D ++ + + S H P+ +
Sbjct: 301 PASFPMARIDQIMVKGVEPLASWTLAATD---------------SDHLPIAARVEL 341
>gi|182411832|ref|YP_001816898.1| endonuclease/exonuclease/phosphatase [Opitutus terrae PB90-1]
gi|177839046|gb|ACB73298.1| Endonuclease/exonuclease/phosphatase [Opitutus terrae PB90-1]
Length = 499
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 18/151 (11%), Positives = 33/151 (21%), Gaps = 40/151 (26%)
Query: 6 GEWLKKWADQ--KIKTGIPFVIAGDFNRKINSI--------------------------- 36
L++ D+ + VI GDFN + N
Sbjct: 220 ARTLRQRLDEILRQDPQADIVIGGDFNSQYNQKRRYPQMTVTGMNDVLGSQGNELAIRGQ 279
Query: 37 --GDTDDFWQKMDPDGLLIRFPQEKEST-------CNVIKRNKSSLDYFVIDRDNKNFLI 87
+ +++ F E + R +D +
Sbjct: 280 QRDLYNLWFELPAEQRGSDTFQGEWGTLIQMLITRGLYDYRGVQYVDNSFGVAKFD--GL 337
Query: 88 DNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S S S H P+ +
Sbjct: 338 NADEKGTPIRWSGEGPAGSGFSDHFPVFARF 368
>gi|325109514|ref|YP_004270582.1| endonuclease/exonuclease/phosphatase [Planctomyces brasiliensis DSM
5305]
gi|324969782|gb|ADY60560.1| Endonuclease/exonuclease/phosphatase [Planctomyces brasiliensis DSM
5305]
Length = 329
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 17/147 (11%), Positives = 32/147 (21%), Gaps = 34/147 (23%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFN-------------------RKINSIGDTDDFW 43
QQ + L++WA ++ +P V GD+N G W
Sbjct: 165 QQQAKGLREWARRQT---LPVVAVGDYNFDFDFRNLTGNPSMSMFMRLDPAERGLFVWNW 221
Query: 44 QKMDPDGLLIRFPQEK---------ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV 94
+ + + + D+ D
Sbjct: 222 IIPNATFTVDGATDVTRKIKLDVTFTDSNWYDPQRDGFDDFRDSLLDFIFVAGPARNWAA 281
Query: 95 SYDQ---SDLDTRRSKLSTHCPLTIEY 118
+ S H P+ +
Sbjct: 282 RSNVIQLPGDFPDNDHTSDHRPVDATF 308
>gi|15226375|ref|NP_178299.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
thaliana]
gi|4522008|gb|AAD21781.1| putative inositol polyphosphate-5-phosphatase [Arabidopsis
thaliana]
gi|330250420|gb|AEC05514.1| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
Length = 417
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 13/129 (10%), Positives = 28/129 (21%), Gaps = 23/129 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLIRFPQEKESTCNV- 65
+KI + GD N +I+ W + + L +
Sbjct: 250 LPKKILDHDRVIFLGDLNYRISLPEEKTRLLVESKKWNILLENDQLRMEIMNGQIFRGWQ 309
Query: 66 ----------------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + + Q + +K+S
Sbjct: 310 EGIVKFAPTYKYVPNSDLYYGCITYKKDEKKRAPAWCDRIIWYGNGLKQHEYTRGETKIS 369
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 370 DHRPVKAIF 378
>gi|291085856|ref|ZP_06354246.2| endonuclease/exonuclease/phosphatase family protein [Citrobacter
youngae ATCC 29220]
gi|291070055|gb|EFE08164.1| endonuclease/exonuclease/phosphatase family protein [Citrobacter
youngae ATCC 29220]
Length = 259
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 169 DQIAHHSGPVIMAGDFNA---------WSRRRMNALYRFAREMSLRQVRFTDDQRRRAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 220 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 253
>gi|148980013|ref|ZP_01815834.1| putative phospholipase C precursor [Vibrionales bacterium SWAT-3]
gi|145961456|gb|EDK26760.1| putative phospholipase C precursor [Vibrionales bacterium SWAT-3]
Length = 450
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 31/117 (26%), Gaps = 10/117 (8%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST-----CNVIKRNKS 71
I + AGDFN NS + + +
Sbjct: 333 IPANEAVIYAGDFNIDKNSDFLEYLLMLATLDVDPPEFRGYTRATFDPTINPYAAYKYSG 392
Query: 72 -----SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
LDY + R ++ + + + ++ + LS H + + F
Sbjct: 393 GADVEYLDYVFVSRVHRRAVNNTNTVKLNQRLNSETWGSWHLSDHFAIDANFVFSPN 449
>gi|323356266|gb|EGA88070.1| Apn2p [Saccharomyces cerevisiae VL3]
Length = 520
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 3/91 (3%)
Query: 29 FNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID 88
FN+ + D + + D + + + + +L L+
Sbjct: 275 FNQILADSLLPDASKRGILIDTTRLIQTRNRLKM-YTVWNMLKNLRPSNYGSRIDFILVS 333
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L S HCP+ + D
Sbjct: 334 LKLERCIKTADILP--DILGSDHCPVYSDLD 362
>gi|308049275|ref|YP_003912841.1| endonuclease/exonuclease/phosphatase [Ferrimonas balearica DSM
9799]
gi|307631465|gb|ADN75767.1| Endonuclease/exonuclease/phosphatase [Ferrimonas balearica DSM
9799]
Length = 293
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 22/121 (18%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ Q L++ + P +++GDFN K+ Q
Sbjct: 172 FATQVSALERRLAKHQG---PMILSGDFNT-------WSPARLKLLAAATSRLGLQPVSF 221
Query: 62 TCNVIKR-NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + R S LD+ D + S H P+ + + +
Sbjct: 222 SQDERTRFFGSPLDHIFHSTDLAVVPGSAKVF-----------DDTDSSDHQPMMVGFRY 270
Query: 121 E 121
+
Sbjct: 271 Q 271
>gi|326779700|ref|ZP_08238965.1| Endonuclease/exonuclease/phosphatase [Streptomyces cf. griseus
XylebKG-1]
gi|326660033|gb|EGE44879.1| Endonuclease/exonuclease/phosphatase [Streptomyces cf. griseus
XylebKG-1]
Length = 341
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 12/116 (10%), Positives = 26/116 (22%), Gaps = 21/116 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ L + + V+ GD N +N Q G +
Sbjct: 247 SADALGEAIAD--ERVERVVLLGDLNGTMNDRSLNAVTAQMRSTQG----AAGDGFGFSW 300
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +D ++ + + S H P+ +
Sbjct: 301 PASFPMARIDQIMVKGVEPLASWTLAATD---------------SDHLPIAARVEL 341
>gi|256269259|gb|EEU04581.1| Apn2p [Saccharomyces cerevisiae JAY291]
gi|259144827|emb|CAY77766.1| Apn2p [Saccharomyces cerevisiae EC1118]
Length = 520
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 3/91 (3%)
Query: 29 FNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID 88
FN+ + D + + D + + + + +L L+
Sbjct: 275 FNQILADSLLPDASKRGILIDTTRLIQTRNRLKM-YTVWNMLKNLRPSNYGSRIDFILVS 333
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L S HCP+ + D
Sbjct: 334 LKLERCIKTADILP--DILGSDHCPVYSDLD 362
>gi|229131369|ref|ZP_04260269.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST196]
gi|228652113|gb|EEL08050.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST196]
Length = 263
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + + GDFN ++ G + + L ++ ++
Sbjct: 156 DRLMERVNSNELSFLMGDFNNNARLEGEGYEYTMQKGLYDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S ++ S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKQNLRIDLILSNRSKTVNSSKVIFNGTNRNVISDHFGVEVQLD 262
>gi|114705004|ref|ZP_01437912.1| Endonuclease/exonuclease/phosphatase family protein [Fulvimarina
pelagi HTCC2506]
gi|114539789|gb|EAU42909.1| Endonuclease/exonuclease/phosphatase family protein [Fulvimarina
pelagi HTCC2506]
Length = 334
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 28/115 (24%), Gaps = 16/115 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L P +I GDFN I +
Sbjct: 227 QIDALS---GALRGLPRPLLIGGDFNATP-----WSAAIASFAEASETIPIEGIGPTF-- 276
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + + IDN + D T + S H P+ +
Sbjct: 277 ------APSDLPASWKRSIGLAIDNVLASREIDILSTRTLKPTASDHLPVLTRFS 325
>gi|127511624|ref|YP_001092821.1| endonuclease/exonuclease/phosphatase [Shewanella loihica PV-4]
gi|126636919|gb|ABO22562.1| Endonuclease/exonuclease/phosphatase [Shewanella loihica PV-4]
Length = 357
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 18/146 (12%), Positives = 37/146 (25%), Gaps = 28/146 (19%)
Query: 5 QGEWLK-KWADQKIKTGIPFVIAGDFNR----------KINSIGDTDDFWQKMDPDG--L 51
+ L+ A ++I T P ++ GDFN ++ D
Sbjct: 212 EASLLRVAIARRRIDTRYPVILMGDFNDSLAGGVLSALVSEDSRLLGVLGEEAFQDYRLQ 271
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-------------- 97
E+ + + L+ N F ++
Sbjct: 272 DAYLLHERSEYSPTSVARAPTHYHLNRGEVIDYILLSNEFDPHNHQCLAQVSQYHTYDSH 331
Query: 98 -QSDLDTRRSKLSTHCPLTIEYDFEK 122
+ R S + H P+ + +
Sbjct: 332 LINPQYDRDSHSTDHAPVMVSLKIRE 357
>gi|333030371|ref|ZP_08458432.1| hypothetical protein Bcop_1247 [Bacteroides coprosuis DSM 18011]
gi|332740968|gb|EGJ71450.1| hypothetical protein Bcop_1247 [Bacteroides coprosuis DSM 18011]
Length = 237
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 18/125 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ +K ++ + GDFN S D K +++ F ++K
Sbjct: 119 QAMKHYSKHL--DFENILAIGDFN----SNTIWDKKHSKYGSHSMVVNFLKQKNIISCYH 172
Query: 67 KRNKSSL-----------DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS-KLSTHCPL 114
+ I + + + R + S H P+
Sbjct: 173 SFYNEEHGQETTPTLYMYRHITKPYHVDYCFISENLYDKMLNIEVGKSGRYLEHSDHMPI 232
Query: 115 TIEYD 119
I+++
Sbjct: 233 IIDFE 237
>gi|307128824|ref|YP_003880840.1| metal-dependent hydrolase [Dickeya dadantii 3937]
gi|306526353|gb|ADM96283.1| Metal-dependent hydrolase [Dickeya dadantii 3937]
Length = 287
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 25/99 (25%), Gaps = 6/99 (6%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK--SSLDYFVIDR 80
++ GD N +S + V S + +
Sbjct: 193 MILMGDLNCLPDSEEYSRLV--GPVSPHHGRLVRHRGLMDAWVAAGQPESSGSTHPSVGG 250
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ L+ S + ++ S H PL +E
Sbjct: 251 RIDHCLLTPSLGLTVRRC--WADTENQGSDHHPLWVELQ 287
>gi|257452662|ref|ZP_05617961.1| hypothetical protein F3_06314 [Fusobacterium sp. 3_1_5R]
gi|317059202|ref|ZP_07923687.1| DNAse I-like protein DHP2 [Fusobacterium sp. 3_1_5R]
gi|313684878|gb|EFS21713.1| DNAse I-like protein DHP2 [Fusobacterium sp. 3_1_5R]
Length = 274
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 5/120 (4%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + ++ + K +I GDFN F + +I + T
Sbjct: 159 QLVKVYRYFQDRNKKENDILIGGDFNLSAFDEA----FSSLYEDKDQIIYGVDPRIKTTI 214
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+K+ +S D + + S + + R+K+S H P+ I + ++ +
Sbjct: 215 GMKKMANSYDNIFLSKKYTEEFTGKS-GAIDFTNRQYKVMRNKVSDHLPVFIIVNIDRDD 273
>gi|237730193|ref|ZP_04560674.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226905732|gb|EEH91650.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 266
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 176 DQIAHHSGPVIMAGDFNA---------WSRRRMNALYRFAREMSLRQVRFTDDQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 227 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 260
>gi|149175328|ref|ZP_01853950.1| Endonuclease/exonuclease/phosphatase [Planctomyces maris DSM 8797]
gi|148845937|gb|EDL60278.1| Endonuclease/exonuclease/phosphatase [Planctomyces maris DSM 8797]
Length = 181
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 15/103 (14%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
G P VI GD N W+ G E + R +S Y +
Sbjct: 88 NGYPSVIVGDTND-----------WRNTLAGGKF--SEHEFQEVTQPPSRYRSFPAY-MP 133
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
I + +I + + + S H PL I++
Sbjct: 134 VGTLDKAFIRGAITIKHAKVAKSKLAK-QASDHLPLVIDFHLN 175
>gi|146297800|ref|YP_001192391.1| endonuclease/exonuclease/phosphatase [Flavobacterium johnsoniae
UW101]
gi|146152218|gb|ABQ03072.1| Endonuclease/exonuclease/phosphatase [Flavobacterium johnsoniae
UW101]
Length = 269
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 4/100 (4%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+ V GDFN S + +KM + + + C S D
Sbjct: 171 PDLNLVFTGDFN-CPESHTVFNPL-KKMGYVSVFQKQKTTLKQKCKAEVCLASEFDNIFY 228
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + Y+ D K+S H P+ E+
Sbjct: 229 KSNTLKPIKSGVVLF--YNNYDSLQEARKISDHIPIWFEF 266
>gi|241952274|ref|XP_002418859.1| phosphatidylinositol 4,5-bisphosphate 5-phosphatase, putative;
synaptojanin-like protein, putative [Candida
dubliniensis CD36]
gi|223642198|emb|CAX44165.1| phosphatidylinositol 4,5-bisphosphate 5-phosphatase, putative
[Candida dubliniensis CD36]
Length = 986
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 28/129 (21%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDT----------------DDFWQKMDPDGLLIRFPQ 57
++ I+ + GDFN +I+ D D ++M F +
Sbjct: 751 NRHIQNHDAVIWLGDFNYRIDLTNDQVKPMILQKLYAKIFEFDQLNKQMASGESFPFFSE 810
Query: 58 EKESTCNVI--------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
++ + N +SY+ + S
Sbjct: 811 QEINFPPTYKFDKGTKVYDTSEKQRIPAWTDRILYLSRQNLIKPLSYN----SCQNLTFS 866
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 867 DHRPVYATF 875
>gi|156972461|ref|YP_001443368.1| nuclease [Vibrio harveyi ATCC BAA-1116]
gi|156524055|gb|ABU69141.1| hypothetical protein VIBHAR_00081 [Vibrio harveyi ATCC BAA-1116]
Length = 982
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 13/82 (15%)
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------- 107
++ +LD+ + ++ ++ +S+L SK
Sbjct: 769 HGADTFSYTYSGELGNLDHALASNSLAQKVVAIEDWHINSLESNLFEYSSKYTGDMPKYK 828
Query: 108 ----LSTHCPLTIEYDFEKGNV 125
S H P+ I DF ++
Sbjct: 829 DAFSASDHDPVIIAIDFPDTDI 850
>gi|313244086|emb|CBY14943.1| unnamed protein product [Oikopleura dioica]
Length = 654
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 29/101 (28%), Gaps = 8/101 (7%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
+I GDFN N + + + + + V + + +
Sbjct: 556 VLIVGDFNADCNYVA--NPESLSLYTSAANDWLIPFE-ADTTVSSTDCAYDHIVLYGNIR 612
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKL-----STHCPLTIEY 118
+ + F ++ +D S H P+ E+
Sbjct: 613 NSVVSSGVFDYQTFYDTDNIFYNGDPITGLISDHYPVEFEF 653
>gi|255727859|ref|XP_002548855.1| hypothetical protein CTRG_03152 [Candida tropicalis MYA-3404]
gi|240133171|gb|EER32727.1| hypothetical protein CTRG_03152 [Candida tropicalis MYA-3404]
Length = 815
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 18/146 (12%), Positives = 36/146 (24%), Gaps = 30/146 (20%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDG----LLIRFPQ 57
L +QG+ ++ GD N F + D
Sbjct: 658 LKRQGQSGDDI------KNASIIVCGDLNSV-KDSAVYQLFSTGVSKDHEDLSDRDFGKF 710
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR------------ 105
+E + K + + N ++ + Y L +
Sbjct: 711 TEEGFHHPFKLKSAYETVGELPFTNMTPGFTDNIDYIWYSTPTLQVKGLLGKVDEEYTSH 770
Query: 106 -------SKLSTHCPLTIEYDFEKGN 124
+ S H P+ + +KG+
Sbjct: 771 CIGFPDANFPSDHVPILARFQVKKGS 796
>gi|224125744|ref|XP_002329707.1| predicted protein [Populus trichocarpa]
gi|222870615|gb|EEF07746.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 31/130 (23%), Gaps = 10/130 (7%)
Query: 5 QGEWLKKW---ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL---IRFPQE 58
Q WL + T V ++N + + + G I F
Sbjct: 277 QVIWLGDFNYRIYLPHTTTRSLVQKKEWNILLERDQLKAELMKGHVFQGWREGIIEFAPT 336
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL---- 114
+ N + + + Q + +LS H P+
Sbjct: 337 YKYYQNSQVYYGCDQKRKGEKKRAPAWCDRIIWFGEGLKQKEYSRGEFRLSDHRPVRAIF 396
Query: 115 TIEYDFEKGN 124
E + +
Sbjct: 397 IAEIEVPSDS 406
>gi|87116466|dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 12/110 (10%), Positives = 34/110 (30%), Gaps = 5/110 (4%)
Query: 11 KWADQKIKT-GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE----KESTCNV 65
++ Q + P+++ GD N S + + +
Sbjct: 119 EYCKQLANSIQSPWMVVGDLNDIATSDEQWGSSSLNYTSLQNFVDAYSDCGLLDPGSSGP 178
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ V+ R + ++ N + +++ ++ + S H P+
Sbjct: 179 NFTWCRFIGNRVVQRRRLDRVLWNVSAQLTFPEAKVSVLPRLCSDHNPIL 228
>gi|67469097|ref|XP_650540.1| inositol polyphosphate-5-phosphatase [Entamoeba histolytica
HM-1:IMSS]
gi|56467177|gb|EAL45154.1| inositol polyphosphate-5-phosphatase, putative [Entamoeba
histolytica HM-1:IMSS]
Length = 920
Score = 36.3 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 13/132 (9%), Positives = 36/132 (27%), Gaps = 24/132 (18%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGD----------------TDDFWQKMDPDGLLIRFPQEK 59
++ + GD N +I+ D M + + F +
Sbjct: 459 ELLQHDVVIWMGDLNYRIDMDDVEVRKCMKMKNYLELIKHDQLLYCMQSNKVFNHFCEAA 518
Query: 60 ESTCNVI----KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + + ++ + + + + + S H P+T
Sbjct: 519 IKFAPTFKIKIGKQGMYEENRIPSWCDRVLWKTEN--RHNVEVKEYMSHELYCSDHKPVT 576
Query: 116 --IEYDFEKGNV 125
+ D ++ N+
Sbjct: 577 CFMSIDLQRINI 588
>gi|313159540|gb|EFR58903.1| endonuclease/exonuclease/phosphatase family protein [Alistipes sp.
HGB5]
Length = 274
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 25/111 (22%), Gaps = 21/111 (18%)
Query: 5 QGEWLKKW-ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + + + + IP +I GD N +S + +
Sbjct: 176 QAKEVIEHAIAPAVAENIPVLIMGDMNCGPSSSAIRE------YEKTGTRLCNNDGTFGG 229
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+S Y D +S H P+
Sbjct: 230 YSKLDY-------------FISFPQGKWSCSDYKVVKGDRLNV-ISDHYPI 266
>gi|228924088|ref|ZP_04087364.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228835578|gb|EEM80943.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 334
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 15/147 (10%), Positives = 39/147 (26%), Gaps = 31/147 (21%)
Query: 5 QGEWLKKWADQKIKTG--IPFVIAGDFNRKINSIGD------TDDFWQKMDPDGLLIRFP 56
+ ++++ D + ++ GD N + +
Sbjct: 188 EAMRVRQYVDSMLHADLTKNIIVLGDLNDGPGMDYFERNYLTHNTVDVIVGSTFEPEFIF 247
Query: 57 QEKESTCNVIKRNKSSLDY-----FVIDRDNKNFLIDNSFSIVS---------------- 95
+ N R + D + L+ S S
Sbjct: 248 HHAQHDENPQDRYTAVFDDFVTGEANSHLLLDHILLSPGLSTNSGLRRVQNSGKIHHAEY 307
Query: 96 --YDQSDLDTRRSKLSTHCPLTIEYDF 120
+ ++ + R ++ S H P++I ++
Sbjct: 308 NNHTVNNGNFRENRPSDHRPVSILLEY 334
>gi|196011427|ref|XP_002115577.1| hypothetical protein TRIADDRAFT_29738 [Trichoplax adhaerens]
gi|190581865|gb|EDV21940.1| hypothetical protein TRIADDRAFT_29738 [Trichoplax adhaerens]
Length = 905
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 4/92 (4%)
Query: 36 IGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD--YFVIDRDNKNFLIDNSFSI 93
D D ++ P + ++ ++ LD + + S
Sbjct: 755 SDDYDTSEKQRTPAWTDRVMWKHIKN-SKTYRKFSRKLDLMNINHLEEITTSHVTESQRK 813
Query: 94 VSYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
+ D K S H P+ D N+
Sbjct: 814 EGHLV-YYDRTELKTSDHRPVAAIIDVNVQNL 844
>gi|152002660|dbj|BAF73613.1| sphingomyelinase C [Streptomyces griseocarneus]
Length = 339
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 14/128 (10%)
Query: 3 SQQGEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ---E 58
S+Q + + D K I ++AGD N +S +
Sbjct: 209 SRQFRQIDAFLDAKNIPADEQVMLAGDLNVDSHSAEYASMLADGDLAPADSRAGHPYSFD 268
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT-------RRSKLST- 110
+ R + + ++N + + Q +R +
Sbjct: 269 TKENSIAAYRYPTDPREDLDYVLHRNGHARPAGWRNTVVQETSAPWTVSSWGKRYTYTDL 328
Query: 111 --HCPLTI 116
H P+
Sbjct: 329 SGHYPVIA 336
>gi|45124783|emb|CAF33353.1| sphingomyelinase C [Bacillus cereus]
Length = 338
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 12/136 (8%), Positives = 32/136 (23%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I +I GD N + + ++ ++
Sbjct: 203 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENKNDSEYASMFKTLNASVPSYTGHTA 262
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + S ++ + S+ Q
Sbjct: 263 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTY 322
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 323 NDYSDHYPVEATISMK 338
>gi|323310178|gb|EGA63370.1| Apn2p [Saccharomyces cerevisiae FostersO]
Length = 442
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 3/91 (3%)
Query: 29 FNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID 88
FN+ + D + + D + + + + +L L+
Sbjct: 275 FNQILADSLLPDASKRGILIDTTRLIQTRNRLKM-YTVWNMLKNLRPSNYGSRIDFILVS 333
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L S HCP+ + D
Sbjct: 334 LKLERCIKTADILP--DILGSDHCPVYSDLD 362
>gi|325298486|ref|YP_004258403.1| Endonuclease/exonuclease/phosphatase [Bacteroides salanitronis DSM
18170]
gi|324318039|gb|ADY35930.1| Endonuclease/exonuclease/phosphatase [Bacteroides salanitronis DSM
18170]
Length = 339
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 19/144 (13%), Positives = 31/144 (21%), Gaps = 35/144 (24%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q LK Q++ + I VI GD N + + +++
Sbjct: 198 QVRALKDSL-QRLDSKIKIVIMGDMNDDPMDKS----MAESLGAKRNAKDVKKKELYNPW 252
Query: 65 VI----------KRNKS-------SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
R K F+ R K + Y
Sbjct: 253 WNTLEGGDGTLKYRGKWNLFDQIVFTGNFLNRRHRKLTYESHQIFKRDYLFQTEGKYAGY 312
Query: 108 L-------------STHCPLTIEY 118
S H P + +
Sbjct: 313 PNRTQAGGRWLNGYSDHLPTVVYF 336
>gi|297823583|ref|XP_002879674.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297325513|gb|EFH55933.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 480
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 34/134 (25%), Gaps = 25/134 (18%)
Query: 15 QKIKTGIPFVIAGDFN-------RKINSIGDTDDFW-------QKMDPDGLLIRFPQEKE 60
+ I + GD N + + D + G + + +E +
Sbjct: 295 ETIMDHDKVIWLGDLNYRLSASSDVHEQLRNHDWEALLEKDQLKIEQRAGRIFKGWEEGK 354
Query: 61 STCNVIKRNKSSLDY-------FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ + + D R + + Q SK S H P
Sbjct: 355 IYFAPTYKYRINSDNYVVQTEKSKEKRRTPAWCDRILWKGDGMKQLWYVRGESKFSDHRP 414
Query: 114 L----TIEYDFEKG 123
+ ++ D +
Sbjct: 415 VQSLFSVHIDLTQN 428
>gi|289741011|gb|ADD19253.1| glucose-repressible alcohol dehydrogenase transcriptional effector
CCR4 [Glossina morsitans morsitans]
Length = 627
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 29/136 (21%), Gaps = 22/136 (16%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP---------- 56
L K + + + V +GDFN G + D +
Sbjct: 486 RKLIKQLNLNEENQLAVVFSGDFNSVP-ECGIFRLMTEGFVEDDFIDWRSNTEEALAGVS 544
Query: 57 ----------QEKESTCNVIKRNKSSLDYFVI-DRDNKNFLIDNSFSIVSYDQSDLDTRR 105
N + LDY + ++
Sbjct: 545 LKQPFRMQSACGTPQYTNFTHAFAACLDYIFYQSDRLDVEQVVPLPALEELKSHIAIPSV 604
Query: 106 SKLSTHCPLTIEYDFE 121
S H L + F+
Sbjct: 605 VFPSDHVALVADLRFK 620
>gi|289540921|gb|ADD09593.1| bristled-like protein [Trifolium repens]
Length = 518
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 7/67 (10%), Positives = 14/67 (20%)
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ R + + S +Q S+ S H
Sbjct: 414 RIVFAPTYKYSHNSDSYAGETVKSKKKRRTPAWCDRILWRGRSIEQLSYIRGESRFSDHR 473
Query: 113 PLTIEYD 119
P+ +
Sbjct: 474 PVCAVFS 480
>gi|282862201|ref|ZP_06271264.1| Endonuclease/exonuclease/phosphatase [Streptomyces sp. ACTE]
gi|282563226|gb|EFB68765.1| Endonuclease/exonuclease/phosphatase [Streptomyces sp. ACTE]
Length = 253
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 11/126 (8%), Positives = 21/126 (16%), Gaps = 20/126 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L D V+ GD N + + D + +
Sbjct: 142 RTQAGLLLDHLDALEVPHA--VVGGDLNDVPDGPAFRRLAGRLQDCRTVRPWGGEPTF-- 197
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----DLDTRRSKLSTHCPLTIE 117
+ ++ + H P+
Sbjct: 198 -----------PAPEPVKRIDAVFATGGVEVLGCGVPAGLPGVTGADLRAATDHLPVLAA 246
Query: 118 YDFEKG 123
G
Sbjct: 247 LRVPAG 252
>gi|258545737|ref|ZP_05705971.1| endonuclease/exonuclease/phosphatase family protein
[Cardiobacterium hominis ATCC 15826]
gi|258518982|gb|EEV87841.1| endonuclease/exonuclease/phosphatase family protein
[Cardiobacterium hominis ATCC 15826]
Length = 239
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 24/115 (20%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L+ + ++ +I GD+N + + + G S
Sbjct: 148 QHRQLR-FIRNRLAAWPDVLITGDYNCTPD-----APQLRILAEHGYRSL---GDASPTF 198
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + +LD+ + + S H P IE D
Sbjct: 199 PSWKPQKALDHAFLKGGLTARSHVSPQRD---------------SDHLPRVIELD 238
>gi|239832253|ref|ZP_04680582.1| endonuclease/exonuclease/phosphatase [Ochrobactrum intermedium LMG
3301]
gi|239824520|gb|EEQ96088.1| endonuclease/exonuclease/phosphatase [Ochrobactrum intermedium LMG
3301]
Length = 403
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 31/140 (22%), Gaps = 38/140 (27%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQK-------------------------------MD 47
++I GDFN I D W MD
Sbjct: 263 ADRRWLICGDFNDYRERIIIGGDEWNGYEFTPMVEEESALDVLLGDGFAVNLVERRPVMD 322
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY----DQSDLDT 103
L ++ C + S +R N + +
Sbjct: 323 RWTLYHTRGPQERHLCQLDYIMASPSFAKKNERAVPNIVRRGQPWRTIFPPGQQIDRYPR 382
Query: 104 RRS---KLSTHCPLTIEYDF 120
K S HCP+ + +
Sbjct: 383 TGWDRPKASDHCPVAVTLNM 402
>gi|167763327|ref|ZP_02435454.1| hypothetical protein BACSTE_01701 [Bacteroides stercoris ATCC
43183]
gi|167698621|gb|EDS15200.1| hypothetical protein BACSTE_01701 [Bacteroides stercoris ATCC
43183]
Length = 372
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 36/150 (24%), Gaps = 35/150 (23%)
Query: 6 GEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL----------- 52
+ LK D +I+T +I GDFN ++ + P
Sbjct: 221 AQRLKDTTDSLLRIRTRPQIIIMGDFNDYSDNKSIQKILKAGIPPTETDSLDSRTLYHLL 280
Query: 53 -IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--------SDLDT 103
+ K + LD+ ++ + + D
Sbjct: 281 ARKGIDNKHFGSYKYQGEWGLLDHIILSGNLLMPGSPLYTAEEKAGVFRAPFLLTEDRKY 340
Query: 104 RRSKL-------------STHCPLTIEYDF 120
+ S H P+ E+
Sbjct: 341 GDEQPFRTYYGMKYQGGYSDHLPVWAEFRL 370
>gi|125718607|ref|YP_001035740.1| hypothetical protein SSA_1808 [Streptococcus sanguinis SK36]
gi|125498524|gb|ABN45190.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 271
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 29/116 (25%), Gaps = 3/116 (2%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
QGEW K ++ +K V+ GDFN + G + +
Sbjct: 159 QGEW-AKLEEKLLKAESSLVLMGDFNNPVGQQGYQTILASPLKLQDSHAVAREAIGEATV 217
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + D + +S H L ++
Sbjct: 218 --EGIIAGWDDNKHALKIDYVFTSQGMDVERSAVVFDGKETPVVSDHFGLEVQVTL 271
>gi|115388908|ref|XP_001211959.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114194355|gb|EAU36055.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1203
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 34/140 (24%), Gaps = 34/140 (24%)
Query: 14 DQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQ--------------KMDPDGLLIRFPQ 57
++ I + GDFN ++ D + M + +
Sbjct: 784 NRSIADHDAIIWLGDFNYRIGRDNQTVRDLVARKDFQKLYDNDQLNLGMLKGWTFQFYTE 843
Query: 58 EKESTCNVIKR------NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS----- 106
+ K +S D + + D + + + R S
Sbjct: 844 GTITFPPTYKYDVGRDEYDTSYDITLPNFDGDQLTTHREKARIPAWCDRILWRGSGLQQT 903
Query: 107 -------KLSTHCPLTIEYD 119
+ S H P+ +
Sbjct: 904 NYQAANLRFSDHRPVWATFS 923
>gi|312883828|ref|ZP_07743547.1| hypothetical protein VIBC2010_14544 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368577|gb|EFP96110.1| hypothetical protein VIBC2010_14544 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 284
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 20/116 (17%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+K+ A + + P + AGDFN D + ++ + +
Sbjct: 189 QIKELAQKLSQHSGPIIFAGDFNTW------NDSRMRVLNDVMEDLELSEA--------- 233
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ N + + + D T + S H PL + +D
Sbjct: 234 -----IFEQDQRTRFINGFVLDHIFFRGLNMIDSKTIPTTASDHNPLVVSFDLPSE 284
>gi|70730243|ref|YP_259982.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
fluorescens Pf-5]
gi|68344542|gb|AAY92148.1| endonuclease/exonuclease/phosphatase family protein [Pseudomonas
fluorescens Pf-5]
Length = 268
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 30/109 (27%), Gaps = 14/109 (12%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ + P +IAGDFN + + + + + +
Sbjct: 168 ESLPEEAPVIIAGDFNDWQMH---GNATLGRRNDLHEAFERHHGRPAKTYPAR------- 217
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + + Q + + LS H PL +E G
Sbjct: 218 ----WPLLRLDRVYLRNAHSHRPQILGNKPWTHLSDHLPLAVEVHLPPG 262
>gi|87116459|dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 12/110 (10%), Positives = 34/110 (30%), Gaps = 5/110 (4%)
Query: 11 KWADQKIKT-GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE----KESTCNV 65
++ Q + P+++ GD N S + + +
Sbjct: 119 EYCKQLANSIQSPWMVVGDLNDIATSDEQWGSSSLNYTSLQNFVDAYSDCGLLDPGSSGP 178
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ V+ R + ++ N + +++ ++ + S H P+
Sbjct: 179 NFTWCRFIGNRVVQRRRLDRVLWNVSAQLTFPEAKVSVLPRLCSDHNPIL 228
>gi|87120863|ref|ZP_01076755.1| exodeoxyribonuclease III [Marinomonas sp. MED121]
gi|86163701|gb|EAQ64974.1| exodeoxyribonuclease III [Marinomonas sp. MED121]
Length = 258
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 15/131 (11%), Positives = 32/131 (24%), Gaps = 23/131 (17%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-------------------G 50
K + + F+ G N + I + F + +
Sbjct: 132 KNHLIKTRRKRREFIFCGTANVARSPIDVSSWFVNQRNSGFLPEERQWINEIFNEHEYID 191
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ ++ + ++ + V S +R
Sbjct: 192 AFRQINKQDKQYTWWPDYERAWKLDEG--GRLDYQIATPGLKQVIRAGSVYKDQRFA--D 247
Query: 111 HCPLTIEYDFE 121
H PL +EYD +
Sbjct: 248 HAPLIMEYDLD 258
>gi|288917788|ref|ZP_06412150.1| Endonuclease/exonuclease/phosphatase [Frankia sp. EUN1f]
gi|288350844|gb|EFC85059.1| Endonuclease/exonuclease/phosphatase [Frankia sp. EUN1f]
Length = 452
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 35/126 (27%), Gaps = 10/126 (7%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD--PDGLLIRFPQEKESTCNV 65
L + G V+ GD N + GDT + + D +
Sbjct: 186 QLASYISSH-SAGNAVVVMGDTNARYTRTGDTIAAFAAANGLTDAWVKLERGGVAPATGS 244
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIV-------SYDQSDLDTRRSKLSTHCPLTIEY 118
L S + + + L++ LS H P+ +++
Sbjct: 245 TALVCDEAAPTDTCEVVDKVLYRGSSFVTLNATGYANRNADFLNSAGVMLSDHFPIAVDF 304
Query: 119 DFEKGN 124
+ + +
Sbjct: 305 SWTRNS 310
>gi|269961414|ref|ZP_06175778.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269833791|gb|EEZ87886.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 982
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 13/82 (15%)
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------- 107
++ +LD+ + ++ ++ +S+L SK
Sbjct: 769 HGADTFSYTYSGELGNLDHALASNSLAQKVVAIEDWHINSLESNLFEYSSKYTGDMPKYK 828
Query: 108 ----LSTHCPLTIEYDFEKGNV 125
S H P+ I DF ++
Sbjct: 829 DAFSASDHDPVIIAIDFPDTDI 850
>gi|294637718|ref|ZP_06715995.1| endonuclease/exonuclease/phosphatase family protein [Edwardsiella
tarda ATCC 23685]
gi|291089148|gb|EFE21709.1| endonuclease/exonuclease/phosphatase family protein [Edwardsiella
tarda ATCC 23685]
Length = 270
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q P ++AGDFN N ++++ + +E +R +
Sbjct: 184 EQIALHKGPVIMAGDFNAWSN---------RRLNALRRFASGMELREVHFTNDQRRTAFG 234
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+++ S + + S H PL +E+
Sbjct: 235 RPLDFVFYRGLGVVEASVLVT------------QASDHNPLLVEFR 268
>gi|254303301|ref|ZP_04970659.1| possible endodeoxyribonuclease [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323493|gb|EDK88743.1| possible endodeoxyribonuclease [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 279
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 5/106 (4%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ K K IAGDFN ++ D I + + +
Sbjct: 170 DYFQDKDKNENDIFIAGDFNLYALDESFR-PLYKHADKITYAIDPAIKTTIGT----KGR 224
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ + S + + + R +S H P+ I
Sbjct: 225 ANSYDNFFFSQKYSQEFTGSSGALDFSGDNPKLMREIISDHIPVFI 270
>gi|3746499|gb|AAD02928.1| reverse transcriptase [Oryzias latipes]
Length = 1258
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 23 FVIAGDFNRKIN-SIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
+ GDFN +N S+ ++ + +E + N + +Y
Sbjct: 139 LICGGDFNIVLNNSLDSSNGKGDYRKIGKKMRHLMEEMGIVDVWRENNPTKREYTHYSHP 198
Query: 82 NKNFLIDNSFSIVSYD---QSDLDTRRSKLSTHCPLTIEY 118
+ + + + D + D +S H P+T+
Sbjct: 199 HNAYSRLDYIFMFKNDLLRVKNSDIGICAISDHNPVTVSL 238
>gi|323338805|gb|EGA80020.1| Apn2p [Saccharomyces cerevisiae Vin13]
Length = 317
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 3/91 (3%)
Query: 29 FNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID 88
FN+ + D + + D + + + + +L L+
Sbjct: 150 FNQILADSLLPDASKRGILIDTTRLIQTRNRLKM-YTVWNMLKNLRPSNYGSRIDFILVS 208
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L S HCP+ + D
Sbjct: 209 LKLERCIKTADILP--DILGSDHCPVYSDLD 237
>gi|313201147|ref|YP_004039805.1| endonuclease/exonuclease/phosphatase [Methylovorus sp. MP688]
gi|312440463|gb|ADQ84569.1| Endonuclease/exonuclease/phosphatase [Methylovorus sp. MP688]
Length = 241
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 20/122 (16%)
Query: 3 SQQGEWLKKWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ L + + +T P ++ GD N + P FP
Sbjct: 133 RSEARNLIRLIQAVEEETKNPLLLMGDINEWQRPSALLRFLDGHLTPVPCKATFPSLCP- 191
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ R ++ + I ++ D R +LS H P+ IE ++
Sbjct: 192 ----------------VLRLDRVWYEAEGIKITAHRIHGNDIR--RLSDHLPIVIELEWP 233
Query: 122 KG 123
+
Sbjct: 234 ES 235
>gi|257466522|ref|ZP_05630833.1| hypothetical protein FgonA2_03678 [Fusobacterium gonidiaformans
ATCC 25563]
gi|315917677|ref|ZP_07913917.1| DNAse I-like protein DHP2 [Fusobacterium gonidiaformans ATCC 25563]
gi|313691552|gb|EFS28387.1| DNAse I-like protein DHP2 [Fusobacterium gonidiaformans ATCC 25563]
Length = 274
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 42/120 (35%), Gaps = 5/120 (4%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + ++ + K +I GDFN F + +I + T
Sbjct: 159 QLVKVYRYFQDRNKKENDILIGGDFNLSAFDEA----FSSLYEDKDQIIYGVDPRIKTTI 214
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+K+ +S D + + S + + R+K+S H P+ I + ++ +
Sbjct: 215 GMKKMANSYDNIFLSKKYTEEFTGKS-GAIDFTNRQYKVMRNKVSDHLPVFIIVNIDRDD 273
>gi|237716420|ref|ZP_04546901.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262408021|ref|ZP_06084569.1| endonuclease/exonuclease/phosphatase family [Bacteroides sp.
2_1_22]
gi|229444067|gb|EEO49858.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262354829|gb|EEZ03921.1| endonuclease/exonuclease/phosphatase family [Bacteroides sp.
2_1_22]
Length = 289
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 28/119 (23%), Gaps = 20/119 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-TDDFWQKMDPDGLLIRFPQEKES 61
+ L K K P GDFN ++ T + D Q
Sbjct: 188 KHACQMLVDAVSDKAKDNTPAFCTGDFNATPDAPEIATTICQSGILKDAYREAAVQHGAL 247
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP--LTIEY 118
+ ++ + + S LS H P + +E
Sbjct: 248 FTFPS-----------KKTRIDFIFVKHATVLSTRTIV------SSLSDHYPMVIVVEI 289
>gi|226294616|gb|EEH50036.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides
brasiliensis Pb18]
Length = 621
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 14/150 (9%), Positives = 29/150 (19%), Gaps = 43/150 (28%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIG------------------------------ 37
+ + G ++ GD N + I
Sbjct: 176 AVDARVRNLVGMGKRVILTGDLNISGSEIDSARALEEIRKGTTTNSEFVSAPVRRIFNQL 235
Query: 38 --------DTDDFWQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLID 88
D D + L + ++ +R + L
Sbjct: 236 VSGGKVIGDRDQGRETPVLVDLCREYHPDRRGMYTCWEQRVNA--RPGNYGSRIDYVLCS 293
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S HCP+ +
Sbjct: 294 LIMRDWFCASNIQE--GLMGSDHCPVYADI 321
>gi|225685280|gb|EEH23564.1| DNA-(apurinic or apyrimidinic site) lyase [Paracoccidioides
brasiliensis Pb03]
Length = 510
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 14/150 (9%), Positives = 29/150 (19%), Gaps = 43/150 (28%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIG------------------------------ 37
+ + G ++ GD N + I
Sbjct: 65 AVDARVRNLVGMGKRVILTGDLNISGSEIDSARALEEIRKGTTTNSEFVSAPVRRIFNQL 124
Query: 38 --------DTDDFWQKMDPDGLLIRFPQEKES-TCNVIKRNKSSLDYFVIDRDNKNFLID 88
D D + L + ++ +R + L
Sbjct: 125 VSGGKVIGDRDQGRETPVLVDLCREYHPDRRGMYTCWEQRVNA--RPGNYGSRIDYVLCS 182
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S HCP+ +
Sbjct: 183 LIMRDWFCASNIQE--GLMGSDHCPVYADI 210
>gi|222112176|ref|YP_002554440.1| endonuclease/exonuclease/phosphatase [Acidovorax ebreus TPSY]
gi|221731620|gb|ACM34440.1| Endonuclease/exonuclease/phosphatase [Acidovorax ebreus TPSY]
Length = 279
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 15/116 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + T P ++AGDFN D ++ + ++
Sbjct: 177 QQQLRRVSALVHS-FPTQDPVIVAGDFNDWRG--RAHDVLQREAGLHEVFVQAC------ 227
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + + + + +LS H PL E
Sbjct: 228 ----GRAVRTFPASLPLLPLDRIYVRGTSVHTPMSLPRRPWN--RLSDHAPLAAEI 277
>gi|156537894|ref|XP_001608131.1| PREDICTED: similar to polyprotein [Nasonia vitripennis]
Length = 1249
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 16/108 (14%), Positives = 28/108 (25%), Gaps = 12/108 (11%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINS--IGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
T IP ++AGD N K S + Q + + E
Sbjct: 462 LHSLFNTNIPTILAGDLNAKHTSWGCIHNNPAGQSLLKKIMKHNICIEPPLVPTHFPGCA 521
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + KN + + S H P+ ++
Sbjct: 522 THDPDILDIFLTKNITLPSDPWTT----------EDLSSDHNPVLVKI 559
>gi|39652288|dbj|BAD04858.1| reverse transcriptase [Tetraodon nigroviridis]
Length = 1119
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 28/120 (23%), Gaps = 8/120 (6%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES-----TC 63
L + + +P V+ GDFN ++ ++ ++
Sbjct: 122 LLEDLQSHMLGKVPLVVGGDFNCILSRKDRRGAGEDFKVDKTSVLLQGICRDFKLQDCFK 181
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ R + + SD S H L+ G
Sbjct: 182 TMHPREEGFTWFSGDGTRASRIDYT---FTRDCPISDARLTPVFFSDHLMLSCTLSLSSG 238
>gi|88704257|ref|ZP_01101971.1| conserved hypothetical protein, secreted [Congregibacter litoralis
KT71]
gi|88701308|gb|EAQ98413.1| conserved hypothetical protein, secreted [Congregibacter litoralis
KT71]
Length = 400
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 34/130 (26%), Gaps = 13/130 (10%)
Query: 4 QQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI---RFPQEK 59
+Q +++ DQ FVI GD N + + + + +
Sbjct: 269 EQADYIYDDRDQPGGLKDERFVILGDLNASMEEGDARREGITALLGHDKVRRGLLPTSDG 328
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ---------SDLDTRRSKLST 110
N R + R + + ++ L R S
Sbjct: 329 GRANNADSRFSPTHTASWGIRADYVIPSKKGWRVIDAGVFWPAPGDPLRRLVKNRRASSD 388
Query: 111 HCPLTIEYDF 120
H + ++ +
Sbjct: 389 HRLVWMDLEL 398
>gi|320592520|gb|EFX04950.1| DNA lyase [Grosmannia clavigera kw1407]
Length = 795
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 11/79 (13%), Positives = 19/79 (24%), Gaps = 3/79 (3%)
Query: 41 DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ D PQ + R L + Q+D
Sbjct: 262 PSSPPILHDACRELHPQRRGMYTCWDTRKN--HRPANFGSRIDFVLCSPRLMQLLVIQAD 319
Query: 101 LDTRRSKLSTHCPLTIEYD 119
+ + S HCP+ +
Sbjct: 320 IQP-QLLGSDHCPVYVVLR 337
>gi|238014180|gb|ACR38125.1| unknown [Zea mays]
Length = 371
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 32/147 (21%), Gaps = 32/147 (21%)
Query: 1 MLSQ--QGEWLKKWADQKIKTGIPFVIAGDFNRKINSI------------------GDTD 40
+LS+ Q E L K +IAGDFN
Sbjct: 223 LLSRVSQFEQL---ISNKYNCKPSVIIAGDFNSTPGDKLELSLEENYSELCFLLMEVYNY 279
Query: 41 DFWQKMDPDGLL-------IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS--F 91
+ + N +LDY + +
Sbjct: 280 LLSANLGSTDEAPIKLRSLYAANGGEPEYTNYTPGFTGTLDYIFLSDGSSIKPTSLLRLP 339
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S D S H P+ ++
Sbjct: 340 RGDSEDVKGGLPNFRHPSDHLPIGADF 366
>gi|229496037|ref|ZP_04389761.1| endonuclease/Exonuclease/phosphatase family protein [Porphyromonas
endodontalis ATCC 35406]
gi|229317129|gb|EEN83038.1| endonuclease/Exonuclease/phosphatase family protein [Porphyromonas
endodontalis ATCC 35406]
Length = 334
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 12/136 (8%), Positives = 28/136 (20%), Gaps = 29/136 (21%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ G ++ GDFN ++ S Y
Sbjct: 195 NKEPGASILVMGDFNTTPRDPITHVWAHPLASRRTAYRADLMYDLTSLVPSGVIPGSYRY 254
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDT-----------------------------RRS 106
+ + ++ S + + L
Sbjct: 255 RGVWQQIDRIVVSGSMLLADNPITYLWESARSVMMRRWMQQDADGELSPKRTYGGHFYMG 314
Query: 107 KLSTHCPLTIEYDFEK 122
+S H P+ ++ +
Sbjct: 315 GVSDHLPVVAQFVLAR 330
>gi|145593795|ref|YP_001158092.1| endonuclease/exonuclease/phosphatase [Salinispora tropica CNB-440]
gi|145303132|gb|ABP53714.1| Endonuclease/exonuclease/phosphatase [Salinispora tropica CNB-440]
Length = 328
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 22/106 (20%), Gaps = 13/106 (12%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
G ++AGDFN ++ + + G + L
Sbjct: 235 PGGQLRILAGDFNATLDHAP-----LRALLDTGYVDAADAAGVGLTGTWGPYDGDL---- 285
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
ID+ S H + +
Sbjct: 286 ----IPPVTIDHVLVDRRIAVRTAAVYAIPGSDHRAVLTDLRLPPT 327
>gi|3746502|gb|AAD02930.1| reverse transcriptase [Oryzias latipes]
Length = 1258
Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 23 FVIAGDFNRKIN-SIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
+ GDFN +N S+ ++ + +E + N + +Y
Sbjct: 139 LICGGDFNIVLNNSLDSSNGKGDYRKIGKKMRHLMEEMGIVDVWRENNPTKREYTHYSHP 198
Query: 82 NKNFLIDNSFSIVSYD---QSDLDTRRSKLSTHCPLTIEY 118
+ + + + D + D +S H P+T+
Sbjct: 199 HNAYSRLDYIFMFKNDLLRVKNSDIGICAISDHNPVTVSL 238
>gi|257126763|ref|YP_003164877.1| endonuclease/exonuclease/phosphatase [Leptotrichia buccalis
C-1013-b]
gi|257050702|gb|ACV39886.1| Endonuclease/exonuclease/phosphatase [Leptotrichia buccalis
C-1013-b]
Length = 257
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 14/112 (12%), Positives = 26/112 (23%), Gaps = 16/112 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + K ++GD N + + +
Sbjct: 161 EMITKFFKKDDLKFLSGDLNFLPTTTYYNEITKNW---------------RDTYIEYNPD 205
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIV-SYDQSDLDTRRSKLSTHCPLTIEYDFE 121
D + + SY +D +KLS H P D +
Sbjct: 206 GKRTLSDPRIDYIFGSQSKKWKVKNSYFINDATQDWTKLSDHLPYMTILDIK 257
>gi|225435512|ref|XP_002282995.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 1013
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 11/104 (10%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE------KESTCNVIKRNKSSL 73
P+ +AGDFN + S + +E +
Sbjct: 135 NGPWCVAGDFNAIL-SPEERSRGGSFNSDMRRFADVIEELQLKDLPLFGGPFTWSGGA-- 191
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL++ + + S +S H P+ +E
Sbjct: 192 -NNQTLSRLDRFLVNEGWDC-RFSHSRQSVLPRPVSDHFPILLE 233
>gi|153834957|ref|ZP_01987624.1| nuclease [Vibrio harveyi HY01]
gi|148868587|gb|EDL67675.1| nuclease [Vibrio harveyi HY01]
Length = 982
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 13/82 (15%)
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------- 107
++ +LD+ + ++ ++ +S+L SK
Sbjct: 769 HGADTFSYTYSGELGNLDHALASNSLAQKVVAIEDWHINSLESNLFEYSSKYTGDMPKYK 828
Query: 108 ----LSTHCPLTIEYDFEKGNV 125
S H P+ I DF ++
Sbjct: 829 DAFSASDHDPVIIAIDFPDTDI 850
>gi|147855489|emb|CAN81751.1| hypothetical protein VITISV_026939 [Vitis vinifera]
Length = 1653
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 17/106 (16%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD---------FWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
P+ I GDFN ++ + F Q +D L+ Q + RN
Sbjct: 747 EEPWCIGGDFNVILSQRERSRQGRLSGAMRNFAQTVDDLELIDLPMQGGIA-TWSGGRNN 805
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S FL+ + + + S H P+ +
Sbjct: 806 QS------WARLDRFLVTQQWLDMFSGVA-QCRMHRPTSDHFPILL 844
>gi|145351399|ref|XP_001420068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580301|gb|ABO98361.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 371
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 27/134 (20%), Gaps = 30/134 (22%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDT--------------------DDFWQKMDPDGLLIR 54
+ + V GD N D D
Sbjct: 198 ENYRGKKDVVWMGDLNVAHQDHDVGPSPRLFEGVGGFTLPERRRFTDILAATDMVDTYRA 257
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------ 108
F ++ + R + + + D I S + S +
Sbjct: 258 FNGDRLTYTWRSTRGQGLDGWQGMRLDYFVVPRKLVARIKSCETSTDRFDDTTAQSMPMS 317
Query: 109 ----STHCPLTIEY 118
S HC + +
Sbjct: 318 CFMDSDHCMIHLSL 331
>gi|9945082|gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 13/107 (12%), Positives = 25/107 (23%), Gaps = 15/107 (14%)
Query: 21 IPFVIAGDFNRK---------INSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ + GDFN + +M L+ P
Sbjct: 95 DKWCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTW-----AG 149
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
I + + + S+ + S H P+ I+
Sbjct: 150 RRGDHWIQCRLDRAFGNKEWFCF-FPVSNQTFLDFRGSDHRPVLIKL 195
>gi|42779563|ref|NP_976810.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus ATCC 10987]
gi|42735479|gb|AAS39418.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus ATCC 10987]
Length = 263
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 10/120 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q L + D + + GDFN ++ G + + L +
Sbjct: 151 FKDQVNRLMERVD----SNELSFLMGDFNNNARLQGEGYEYMMQKGLYDTYELAI----E 202
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++ + D + L + S + S T R+ +S H + ++ D
Sbjct: 203 KDEGTTVQGEIAGWDENKHNLRIDLILCNRSEKVRSSKVIFNGTNRNVISDHFGVEVQVD 262
>gi|304317722|ref|YP_003852867.1| endonuclease/exonuclease/phosphatase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779224|gb|ADL69783.1| Endonuclease/exonuclease/phosphatase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 248
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 23/115 (20%), Gaps = 16/115 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + +K + + +I D N NS E C
Sbjct: 149 QAQKIKDELNNNGFSNERLIIGCDLNDGENSDTYNIMLNNVFSMVDSGPAGICTLE--CY 206
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N F + +S H P+ +
Sbjct: 207 NNSNNPKIDFLFNCGTSIDATKS--------------KVLQVDISDHRPVMAYIN 247
>gi|242048100|ref|XP_002461796.1| hypothetical protein SORBIDRAFT_02g008271 [Sorghum bicolor]
gi|241925173|gb|EER98317.1| hypothetical protein SORBIDRAFT_02g008271 [Sorghum bicolor]
Length = 1090
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNR----KINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
L + A+ K +P++I GDFN + S GD D W + + +E T
Sbjct: 783 LVELANTCSKETLPYIIGGDFNIMQGPEEKSSGDFDPKWPNLFNAVIESLDLKEIAMTG- 841
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + L+ + I+ + + + TR +S H PL +
Sbjct: 842 -RQFTWAEPGDNPTLEKIDKVLVSTEWEIM-FPLTTVQTRDGNISDHTPLVL 891
>gi|75759565|ref|ZP_00739653.1| Sphingomyelin phosphodiesterase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74492943|gb|EAO56071.1| Sphingomyelin phosphodiesterase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 329
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 12/136 (8%), Positives = 32/136 (23%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I +I GD N + + ++ ++
Sbjct: 194 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENKNDSEYTSMFKTLNASVPSYTGHTA 253
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + S ++ + S+ Q
Sbjct: 254 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTY 313
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 314 NDYSDHYPVEATISMK 329
>gi|66818247|ref|XP_642783.1| hypothetical protein DDB_G0277365 [Dictyostelium discoideum AX4]
gi|60470897|gb|EAL68869.1| hypothetical protein DDB_G0277365 [Dictyostelium discoideum AX4]
Length = 1047
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 18/115 (15%)
Query: 10 KKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+W + + +I GDFN + + + + + + +
Sbjct: 22 HEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGI-----TFP 76
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
RNKS++D + + + + + S H + IE +
Sbjct: 77 RNKSTIDRVFVSKKILHLNPIVTTKEIKLK-----------SDHNMVIIELKIPE 120
>gi|66812598|ref|XP_640478.1| hypothetical protein DDB_G0281941 [Dictyostelium discoideum AX4]
gi|66822285|ref|XP_644497.1| hypothetical protein DDB_G0273761 [Dictyostelium discoideum AX4]
gi|66822797|ref|XP_644753.1| hypothetical protein DDB_G0273345 [Dictyostelium discoideum AX4]
gi|60468526|gb|EAL66530.1| hypothetical protein DDB_G0281941 [Dictyostelium discoideum AX4]
gi|60472620|gb|EAL70571.1| hypothetical protein DDB_G0273761 [Dictyostelium discoideum AX4]
gi|60472941|gb|EAL70890.1| hypothetical protein DDB_G0273345 [Dictyostelium discoideum AX4]
Length = 1047
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 18/115 (15%)
Query: 10 KKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+W + + +I GDFN + + + + + + +
Sbjct: 22 HEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGI-----TFP 76
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
RNKS++D + + + + + S H + IE +
Sbjct: 77 RNKSTIDRVFVSKKILHLNPIVTTKEIKLK-----------SDHNMVIIELKIPE 120
>gi|66812008|ref|XP_640183.1| hypothetical protein DDB_G0282797 [Dictyostelium discoideum AX4]
gi|60468248|gb|EAL66258.1| hypothetical protein DDB_G0282797 [Dictyostelium discoideum AX4]
Length = 1047
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 18/115 (15%)
Query: 10 KKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+W + + +I GDFN + + + + + + +
Sbjct: 22 HEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGI-----TFP 76
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
RNKS++D + + + + + S H + IE +
Sbjct: 77 RNKSTIDRVFVSKKILHLNPIVTTKEIKLK-----------SDHNMVIIELKIPE 120
>gi|66801119|ref|XP_629485.1| hypothetical protein DDB_G0292796 [Dictyostelium discoideum AX4]
gi|66827047|ref|XP_646878.1| hypothetical protein DDB_G0269056 [Dictyostelium discoideum AX4]
gi|60462873|gb|EAL61072.1| hypothetical protein DDB_G0292796 [Dictyostelium discoideum AX4]
gi|60475181|gb|EAL73117.1| hypothetical protein DDB_G0269056 [Dictyostelium discoideum AX4]
Length = 1047
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 18/115 (15%)
Query: 10 KKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+W + + +I GDFN + + + + + + +
Sbjct: 22 HEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGI-----TFP 76
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
RNKS++D + + + + + S H + IE +
Sbjct: 77 RNKSTIDRVFVSKKILHLNPIVTTKEIKLK-----------SDHNMVIIELKIPE 120
>gi|66825159|ref|XP_645934.1| hypothetical protein DDB_G0270860 [Dictyostelium discoideum AX4]
gi|60474843|gb|EAL72780.1| hypothetical protein DDB_G0270860 [Dictyostelium discoideum AX4]
Length = 1047
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 18/115 (15%)
Query: 10 KKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+W + + +I GDFN + + + + + + +
Sbjct: 22 HEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGI-----TFP 76
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
RNKS++D + + + + + S H + IE +
Sbjct: 77 RNKSTIDRVFVSKKILHLNPIVTTKEIKLK-----------SDHNMVIIELKIPE 120
>gi|66826303|ref|XP_646506.1| hypothetical protein DDB_G0271018 [Dictyostelium discoideum AX4]
gi|60474922|gb|EAL72859.1| hypothetical protein DDB_G0271018 [Dictyostelium discoideum AX4]
Length = 1047
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 18/115 (15%)
Query: 10 KKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+W + + +I GDFN + + + + + + +
Sbjct: 22 HEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGI-----TFP 76
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
RNKS++D + + + + + S H + IE +
Sbjct: 77 RNKSTIDRVFVSKKILHLNPIVTTKEIKLK-----------SDHNMVIIELKIPE 120
>gi|66815449|ref|XP_641741.1| hypothetical protein DDB_G0279389 [Dictyostelium discoideum AX4]
gi|60469856|gb|EAL67843.1| hypothetical protein DDB_G0279389 [Dictyostelium discoideum AX4]
Length = 980
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 18/115 (15%)
Query: 10 KKWADQKIKTG--IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+W + + +I GDFN + + + + + + +
Sbjct: 22 HEWYKENLTEEILHSDIITGDFNVDCSVDNNLNKYIKTIFDEFEFTEIKNGI-----TFP 76
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
RNKS++D + + + + + S H + IE +
Sbjct: 77 RNKSTIDRVFVSKKILHLNPIVTTKEIKLK-----------SDHNMVIIELKIPE 120
>gi|312382185|gb|EFR27728.1| hypothetical protein AND_05223 [Anopheles darlingi]
Length = 518
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 12/130 (9%), Positives = 31/130 (23%), Gaps = 10/130 (7%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF------PQE 58
Q ++ + + ++AGD N + + D + E
Sbjct: 80 QAYDTAQFIESTRGNSVLQILAGDLNTEPGDLAYRVLLTSSNLKDSYDRKLLGGLLCTNE 139
Query: 59 KESTCNVIKR----NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
ES N + + + + + S H +
Sbjct: 140 CESNSYTDATAAKQNPNGKRIDYVLYRIGDHYEGRLLEHRLPLPKRVPGQSFSYSDHEAV 199
Query: 115 TIEYDFEKGN 124
+ ++ +
Sbjct: 200 YAKLILKRSS 209
>gi|301165090|emb|CBW24658.1| conserved hypothetical protein [Bacteroides fragilis 638R]
Length = 608
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 30/106 (28%), Gaps = 21/106 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD--FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
T PF +AGDFN +S D +Q + +S
Sbjct: 160 ADTRKPFFLAGDFNSDADSGFIKDLKSTFQILSNPKQ---------------PTYPASEP 204
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+D +F + S D S H PL +E
Sbjct: 205 KETLDYLIALKQETPTFVVNSARVIDEPL----ASDHRPLLVEVRM 246
>gi|298388272|ref|ZP_06997777.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
gi|298258970|gb|EFI01889.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
Length = 170
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 30/106 (28%), Gaps = 21/106 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD--FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
T PF +AGDFN +S D +Q + +S
Sbjct: 48 ADTRKPFFLAGDFNSDADSGFIKDLKSTFQILSNPKQ---------------PTYPASEP 92
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+D +F + S D S H PL +E
Sbjct: 93 KETLDYLIALKQETPTFVVNSARVIDEPL----ASDHRPLLVEVRM 134
>gi|265767421|ref|ZP_06095087.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263252726|gb|EEZ24238.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 608
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 30/106 (28%), Gaps = 21/106 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD--FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
T PF +AGDFN +S D +Q + +S
Sbjct: 160 ADTRKPFFLAGDFNSDADSGFIKDLKSTFQILSNPKQ---------------PTYPASEP 204
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+D +F + S D S H PL +E
Sbjct: 205 KETLDYLIALKQETPTFVVNSARVIDEPL----ASDHRPLLVEVRM 246
>gi|258571908|ref|XP_002544757.1| predicted protein [Uncinocarpus reesii 1704]
gi|237905027|gb|EEP79428.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1016
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 14/89 (15%), Positives = 22/89 (24%), Gaps = 5/89 (5%)
Query: 29 FNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID 88
FNR + ++ + L R S D +
Sbjct: 859 FNRLMEPKVMFPPTYKYSNDARSLASVDPN-GGWKWAKTRWPSWCDRILYLDHPSKTNES 917
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
I YD L + S H P+ +
Sbjct: 918 GIVKIHRYDILPLCS----TSDHRPVVLS 942
>gi|53715634|ref|YP_101626.1| hypothetical protein BF4354 [Bacteroides fragilis YCH46]
gi|52218499|dbj|BAD51092.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
Length = 608
Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 30/106 (28%), Gaps = 21/106 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDD--FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
T PF +AGDFN +S D +Q + +S
Sbjct: 160 ADTRKPFFLAGDFNSDADSGFIKDLKSTFQILSNPKQ---------------PTYPASEP 204
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+D +F + S D S H PL +E
Sbjct: 205 KETLDYLIALKQETPTFVVNSARVIDEPL----ASDHRPLLVEVRM 246
>gi|323306058|gb|EGA59792.1| Apn2p [Saccharomyces cerevisiae FostersB]
Length = 404
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 3/91 (3%)
Query: 29 FNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID 88
FN+ + D + + D + + + + +L L+
Sbjct: 237 FNQILADSLLPDASKRGILIDTTRLIQTRNRLKM-YTVWNMLKNLRPSNYGSRIDFILVS 295
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L S HCP+ + D
Sbjct: 296 LKLERCIKTADILP--DILGSDHCPVYSDLD 324
>gi|283457615|ref|YP_003362199.1| metal-dependent hydrolase [Rothia mucilaginosa DY-18]
gi|283133614|dbj|BAI64379.1| metal-dependent hydrolase [Rothia mucilaginosa DY-18]
Length = 292
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 3/119 (2%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ +Q+ L + + P ++ GDFN + + F K
Sbjct: 160 LFAQEFTRLSQALAE-CAETAPVLLGGDFNSAAHLPDEGYAFVTSTGLIDTRTIAKHTKG 218
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R + + + D + S+ D +S H L +E D
Sbjct: 219 ENTV--HREIAGWEGSSDAKRIDFVFTDRLVDVASHTVVFRDNSPEAISDHSGLLLEID 275
>gi|315498086|ref|YP_004086890.1| endonuclease/exonuclease/phosphatase [Asticcacaulis excentricus CB
48]
gi|315416098|gb|ADU12739.1| Endonuclease/exonuclease/phosphatase [Asticcacaulis excentricus CB
48]
Length = 351
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 29/130 (22%), Gaps = 24/130 (18%)
Query: 13 ADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN-----V 65
K+ + AGDFN + + L + S
Sbjct: 217 LATKLPQSHVILAAGDFNFNCAPDERKGLAAAFTGWVLPAQLDNACRGNGSQFYGREKTW 276
Query: 66 IK-----------------RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
KS + + D ++ + + S
Sbjct: 277 SYLDVITQKASGASQAWAIDPKSFRTVLTDNEQLQWDDRDQVMRPKAFRFNAETGKGSGT 336
Query: 109 STHCPLTIEY 118
S H P+ I+
Sbjct: 337 SDHWPIAIDL 346
>gi|225453658|ref|XP_002268290.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 232
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 34/120 (28%), Gaps = 20/120 (16%)
Query: 10 KKWADQKIKT-----GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFP 56
++W +++ P+ + GDFN + + ++ D L+
Sbjct: 120 REWLWEEVGAIRGIWEGPWCLGGDFNITLAQGERNRQGRITSAMRRFAEVVDDLGLVDLQ 179
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + + FL+ + S +S H P+ +
Sbjct: 180 MQGGAFTWT------GGLNNMSRARLDIFLVSPCWLDQFSRVS-QRRLPRPISDHFPVLL 232
>gi|193216492|ref|YP_001999734.1| membrane nuclease A [Mycoplasma arthritidis 158L3-1]
gi|193001815|gb|ACF07030.1| membrane nuclease A [Mycoplasma arthritidis 158L3-1]
Length = 466
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 38/134 (28%), Gaps = 16/134 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSI--GDTDDFWQKMDPDGLLIR------ 54
++Q + D+ +GD N K ++ ++K
Sbjct: 334 ARQLANVLDHFDEIDGENEDIFFSGDTNIKAGKEKFAFGEELFKKYQSAFKDNLEFATSL 393
Query: 55 -------FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + Y + D + + + + + R+
Sbjct: 394 GIKAGNYSQPYDKMFTKTKFKTSNHGIYKLWDLSKDDEFTNLFKELHNGKIETSEIRKL- 452
Query: 108 LSTHCPLTIEYDFE 121
+S H P+ E +FE
Sbjct: 453 VSDHAPIYSEVEFE 466
>gi|4056496|gb|AAC98062.1| unknown protein [Arabidopsis thaliana]
Length = 401
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 25/135 (18%)
Query: 15 QKIKTGIPFVIAGDFN-------RKINSIGDTDDF-------WQKMDPDGLLIRFPQEKE 60
+ I + GD N + + D + G + + +E +
Sbjct: 216 ETIMDHDKVIWLGDLNYRLRASSDLHEQLRNHDWESLLEKDQLKIEQRAGRIFKGWEEGK 275
Query: 61 STCNVIKRNKSSLDY-------FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ + + D R + + Q SK S H P
Sbjct: 276 IYFAPTYKYRINSDNYVVQTEKSKEKRRTPAWCDRILWKGDGMKQLWYVRGESKFSDHRP 335
Query: 114 L----TIEYDFEKGN 124
+ ++ D + +
Sbjct: 336 VQSLFSVHIDLKNQS 350
>gi|1173836|gb|AAA86615.1| membrane nuclease A [Mycoplasma pulmonis]
Length = 470
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 38/134 (28%), Gaps = 16/134 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSI--GDTDDFWQKMDPDGLLIR------ 54
++Q + D+ +GD N K ++ ++K
Sbjct: 338 ARQLANVLDHFDEIDGENEDIFFSGDTNIKAGKEKFAFGEELFKKYQSAFKDNLEFATSL 397
Query: 55 -------FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + + Y + D + + + + + R+
Sbjct: 398 GIKAGNYSQPYDKMFTKTKFKTSNHGIYKLWDLSKDDEFTNLFKELHNGKIETSEIRKL- 456
Query: 108 LSTHCPLTIEYDFE 121
+S H P+ E +FE
Sbjct: 457 VSDHAPIYSEVEFE 470
>gi|291575305|gb|ADE10230.1| putative membrane protein [Actinoplanes liguriensis]
Length = 301
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 26/119 (21%), Gaps = 25/119 (21%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L V+ GD N ++ G Q M +
Sbjct: 208 DESARKLGALLAA--DPVPRLVVIGDLNTSVDDRGLR-PIRQVMIDS-------PADFAF 257
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + +D + + L S H PL E F
Sbjct: 258 TWPARTPVARIDQVLARSM---------------TVTRLTALPRTGSDHLPLAAEIRFP 301
>gi|294628219|ref|ZP_06706779.1| FG-GAP repeat domain-containing protein [Streptomyces sp. e14]
gi|292831552|gb|EFF89901.1| FG-GAP repeat domain-containing protein [Streptomyces sp. e14]
Length = 569
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 10/116 (8%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK---- 59
Q+ L + Q GIP V+ GDFN F++ + G ++
Sbjct: 203 QEAAKLAQLTRQWQDAGIPVVLGGDFNDTPR-TAVATPFYEPANGHGTGTFVEADETDQD 261
Query: 60 ---ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
C+ + S + + S L + +S H
Sbjct: 262 HFLADDCSDGRTRCRSGEPTFNNSKLDYLFFSAG-SFTGAKADVLPL-DTAVSDHR 315
>gi|262383334|ref|ZP_06076470.1| endonuclease/exonuclease/phosphatase [Bacteroides sp. 2_1_33B]
gi|262294232|gb|EEY82164.1| endonuclease/exonuclease/phosphatase [Bacteroides sp. 2_1_33B]
Length = 304
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 33/127 (25%), Gaps = 19/127 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKI--------NSIGDTDD--------FWQKMDPDGLLIRFP 56
Q +K G P + GDFN G + ++ +
Sbjct: 178 IQQVMKEGYPVFLTGDFNEPSFLDWTQRAADAGIHKIKVEWPATKAFSEIGMNDSYRTIH 237
Query: 57 QE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ ++ + + + +SF + + S H
Sbjct: 238 PDEVSTPGYTWTPVPSEQEILDRLDFVLYSGCKVTDSFITGESEATSDVVVSPYPSDHRM 297
Query: 114 LTIEYDF 120
+T ++F
Sbjct: 298 VTSCFNF 304
>gi|82701739|ref|YP_411305.1| endonuclease/exonuclease/phosphatase [Nitrosospira multiformis ATCC
25196]
gi|82409804|gb|ABB73913.1| Endonuclease/exonuclease/phosphatase [Nitrosospira multiformis ATCC
25196]
Length = 250
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 14/110 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
S+Q + L+K ++ + P VIAGDFN + + + + +
Sbjct: 146 SRQLQLLEKHIEELVPQDAPLVIAGDFNDW---REVASRILVQRLALAEVFELTEGRPAR 202
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + + SK+S H
Sbjct: 203 TYPS---------TLPLFRLDRIYVRGFHIEKAQVHQGHPW--SKISDHA 241
>gi|62734012|gb|AAX96121.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
gi|77550160|gb|ABA92957.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1556
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 32/119 (26%), Gaps = 15/119 (12%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKIN--------SIGDTDDFWQKMDPDGLLIRFPQE 58
++L + + K +P VI GDFN N + + L
Sbjct: 845 DFLLELVNSCSKEALPMVIGGDFNIIRNPMEKNNERYNDRWPFLFNVVIDSLNLREILLS 904
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + + N V D LS H PL ++
Sbjct: 905 GCKFTWANSMPNPTYEKLDRVLVSTEWETKNPLVTVHALCRD-------LSDHTPLVLD 956
>gi|325922580|ref|ZP_08184334.1| metal-dependent hydrolase [Xanthomonas gardneri ATCC 19865]
gi|325546930|gb|EGD18030.1| metal-dependent hydrolase [Xanthomonas gardneri ATCC 19865]
Length = 255
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 11/109 (10%), Positives = 30/109 (27%), Gaps = 21/109 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + ++ GDFN + Q + L E + +
Sbjct: 161 AFIAELLSEHPNAMLMGDFNCMAD-----RPEMQALYRHTRLQPPSCEVHTFPSWRPDRA 215
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ L+ +S + ++ + S H + ++
Sbjct: 216 -----------IDHILVSDSLT-----IERIEAIPAAFSDHLAVGMDIR 248
>gi|323349886|gb|EGA84099.1| Apn2p [Saccharomyces cerevisiae Lalvin QA23]
Length = 455
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 3/91 (3%)
Query: 29 FNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID 88
FN+ + D + + D + + + + +L L+
Sbjct: 275 FNQILADSLLPDASKRGILIDTTRLIQTRNRLKM-YTVWNMLKNLRPSNYGSRIDFILVS 333
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L S HCP+ + D
Sbjct: 334 LKLERCIKTADILP--DILGSDHCPVYSDLD 362
>gi|171463328|ref|YP_001797441.1| Endonuclease/exonuclease/phosphatase [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171192866|gb|ACB43827.1| Endonuclease/exonuclease/phosphatase [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 250
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 18/118 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E + Q + G P ++AGDFN N + + + ++
Sbjct: 150 ERQLEAIIGHI-QDLTGGGPTIVAGDFNDWRN--RVSAPMKAAGFDEVFEMLTSSPAKTF 206
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+V Y + + ++ KLS H +T E +
Sbjct: 207 PSVKPLLPMDRIYVRGLKVHSAQILHEWL---------------KLSDHLGITAELEL 249
>gi|261567|gb|AAB24455.1| CCR4 [Saccharomyces cerevisiae]
Length = 837
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 37/153 (24%), Gaps = 33/153 (21%)
Query: 5 QGEWLKKWADQKIKTGI-----------PFVIAGDFNRKINSIGDT--DDFWQKMDPDGL 51
Q L + +K P +I GDFN INS + ++ +G
Sbjct: 679 QVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVYELINTGRVQIHQEGN 738
Query: 52 LIRF-------------------PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
F + N +DY
Sbjct: 739 GRDFGYMSEKNFSHNLALKSSYNCIGELPFTNFTPSFTDVIDYIWFSTHALRVRGLLGEV 798
Query: 93 IVSYDQS-DLDTRRSKLSTHCPLTIEYDFEKGN 124
Y+ S H PL ++F K N
Sbjct: 799 DPEYESKFIGFPNDKFPSDHIPLLARFEFMKTN 831
>gi|323465309|gb|ADX77462.1| beta-hemolysin [Staphylococcus pseudintermedius ED99]
Length = 330
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 39/132 (29%), Gaps = 17/132 (12%)
Query: 1 MLSQQGEWLKKWAD-QKIKTGIPFVIAGDFNRKINS-IGDTDDFWQKMDPDGLLIRFP-- 56
+ ++Q + + + + I I GD N N+ G+ D + ++ +
Sbjct: 196 IRAEQMKEISNFVKSKNIPKDEVVYIGGDMNVNKNAGNGEFQDMLKNLNVSDVTYTGHSS 255
Query: 57 -QEKESTCNVIKRNKS-----------SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ +S + D+ + + + S + Y L
Sbjct: 256 TWDPQSNSIAKYNYPNSAPEYLDYIFVDKDHRQPGQLINEAVAEKSPTWDVYKFPYLYVY 315
Query: 105 RSKLSTHCPLTI 116
S H P+
Sbjct: 316 NDY-SDHYPVKA 326
>gi|315056461|ref|XP_003177605.1| glucose-repressible alcohol dehydrogenase transcriptional effector
protein [Arthroderma gypseum CBS 118893]
gi|311339451|gb|EFQ98653.1| glucose-repressible alcohol dehydrogenase transcriptional effector
protein [Arthroderma gypseum CBS 118893]
Length = 801
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 31/126 (24%), Gaps = 25/126 (19%)
Query: 18 KTGIPFVIAGDFNRKINS---------------IGDTDDFWQKMDPDGLLIRFP------ 56
+ IP ++ GDFN + +S + + + G+ F
Sbjct: 651 PSQIPTLVCGDFNSRPSSAVYNLLAHGRLEEEHPDLRNRLYGNLTRQGMTHPFTLKSAYS 710
Query: 57 -QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCP 113
+ S N +DY + Y S H
Sbjct: 711 AIGELSFTNYTPGFTDVIDYIWYSSNLLQVTGLLGEVDKEYLQRVPGFPNY-HFPSDHLA 769
Query: 114 LTIEYD 119
L E+
Sbjct: 770 LMAEFS 775
>gi|189466708|ref|ZP_03015493.1| hypothetical protein BACINT_03083 [Bacteroides intestinalis DSM
17393]
gi|189434972|gb|EDV03957.1| hypothetical protein BACINT_03083 [Bacteroides intestinalis DSM
17393]
Length = 353
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 36/152 (23%), Gaps = 35/152 (23%)
Query: 4 QQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGL---------- 51
LK AD + +I GDFN ++ + K
Sbjct: 200 HAARQLKAAADSIYLHRYHPQILIMGDFNDYPDNASVSKIVSAKAPLQDKSSLQPQRFYH 259
Query: 52 --LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--------SDL 101
+ +K+ + LD+ ++ D S D D
Sbjct: 260 LLARKAATQKDFGSYKYQGEWGLLDHIIVSGTLLQPDADFCTSESKADIFRPSFLLTDDK 319
Query: 102 DTRRSKL-------------STHCPLTIEYDF 120
+ S H P+ ++
Sbjct: 320 KYGGVQPFRTYYGMKYQNGYSDHLPVWADFRL 351
>gi|41469585|gb|AAS07328.1| putative phosphatase (with alternative splicing) [Oryza sativa
Japonica Group]
Length = 562
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 7/72 (9%), Positives = 14/72 (19%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + R R + + +Q
Sbjct: 446 RVFSGWKEGRIYFPPTYKYSYNSDRYAGDDMRPNEKRRTPAWCDRILWYGRGLNQLCYVR 505
Query: 104 RRSKLSTHCPLT 115
S+ S H P+
Sbjct: 506 GESRFSDHRPVY 517
>gi|307752095|gb|ADN93066.1| putative DNA lyase [Arthroderma benhamiae]
Length = 588
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 12/109 (11%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P GD + D ++ P + ++ S +DY +
Sbjct: 202 RPVGSTGDTHDTETPPVLRD-LCREFHPSRTGMYTCWNQKVNARP-GNYGSRIDYILCSD 259
Query: 81 DNKNFLIDNSFSI----------VSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +++ ++++ +L + S HCP+
Sbjct: 260 NIRSWFVESNIQEGLIVCVKLELTYRSFKNLLISNEQGSDHCPVYASIS 308
>gi|291241803|ref|XP_002740799.1| PREDICTED: conserved hypothetical protein-like [Saccoglossus
kowalevskii]
Length = 1257
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 30/105 (28%), Gaps = 11/105 (10%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI---NSIGDTDDFWQKMDPDGLLIRFPQEKE 60
Q + + ++ Q I P ++ GDFN D+ ++ +
Sbjct: 703 QAQEMAQFIAGQNIPKTEPVIVGGDFNADTYNNMYHEHRDEIFEILGAT------MPNII 756
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR 105
+ + + + F + + D+ T R
Sbjct: 757 GNSYTTYDSD-FIPGISVWKGTSPFCHPSGTACDDASMDDILTAR 800
>gi|226360305|ref|YP_002778083.1| hypothetical protein ROP_08910 [Rhodococcus opacus B4]
gi|226238790|dbj|BAH49138.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length = 320
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 11/118 (9%), Positives = 29/118 (24%), Gaps = 14/118 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
S++ + + D P +++GDFN + + + +
Sbjct: 215 SREMDRIAAILDTIPADSGPVIVSGDFNSTRDHVKYRNLV--------TGRYRDAADQVG 266
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + F + + ++ + S H L
Sbjct: 267 AGIQNTYPADRQPFPPMIAIDHIVTSDAQAQSVESVV------LTGSDHRGLVARITL 318
>gi|167521878|ref|XP_001745277.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776235|gb|EDQ89855.1| predicted protein [Monosiga brevicollis MX1]
Length = 362
Score = 36.0 bits (81), Expect = 1.6, Method: Composition-based stats.
Identities = 14/140 (10%), Positives = 23/140 (16%), Gaps = 22/140 (15%)
Query: 2 LSQQ-----GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMD------PDG 50
L +Q L A ++ GDFN + + P
Sbjct: 216 LRRQDTQMLLTQLDAAAAAAESEVQATIVMGDFNCEPTEDCHAPWRERGFLCAVEDMPWT 275
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF-----------SIVSYDQS 99
E + N D
Sbjct: 276 TWKFRDTPTEPGTAPPPGTAPLTQPKEKREKIDYIYVLNGPGAQVAVEAFLDVPADADIP 335
Query: 100 DLDTRRSKLSTHCPLTIEYD 119
+ S H + +
Sbjct: 336 RALPAPNYASDHLAVAARLN 355
>gi|121595605|ref|YP_987501.1| endonuclease/exonuclease/phosphatase [Acidovorax sp. JS42]
gi|120607685|gb|ABM43425.1| Endonuclease/exonuclease/phosphatase [Acidovorax sp. JS42]
Length = 291
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 14/115 (12%), Positives = 25/115 (21%), Gaps = 12/115 (10%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI-------- 66
Q V+ GDFN + + D +G +
Sbjct: 179 QPKAHTPHAVLCGDFNLQAHEPEYAVLAAALADEEGATAGQAGQPPLWDAWRLLHPGAPQ 238
Query: 67 -KRNKSSL-DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
Y + +S ++ S H P+ +E
Sbjct: 239 PPTFCVFDQTYAPQPLACDFIWVSDSLRSRVRAVRVDGV--TQASDHQPVLLELQ 291
>gi|260061504|ref|YP_003194584.1| hypothetical protein RB2501_07885 [Robiginitalea biformata
HTCC2501]
gi|88785636|gb|EAR16805.1| hypothetical protein RB2501_07885 [Robiginitalea biformata
HTCC2501]
Length = 387
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 14/142 (9%), Positives = 27/142 (19%), Gaps = 28/142 (19%)
Query: 3 SQQGEWL-KKWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD---------- 49
+ L + D ++ FV GD+N D
Sbjct: 227 RRAAASLQRDILDSVLRLDPNARFVSMGDYNDDPTDASIRFTLGSGSSRDSLASREFFNP 286
Query: 50 ---------------GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV 94
F Q + + R + +
Sbjct: 287 MEPLFLAGSGSLAYGDRWNLFDQLMFNGNWFRDTTGYRFWKARVFRPDYLLTSSGPYKGY 346
Query: 95 SYDQSDLDTRRSKLSTHCPLTI 116
+ + + S H P+
Sbjct: 347 PFRTYAGGSYQGGYSDHLPVYA 368
>gi|308497438|ref|XP_003110906.1| hypothetical protein CRE_04843 [Caenorhabditis remanei]
gi|308242786|gb|EFO86738.1| hypothetical protein CRE_04843 [Caenorhabditis remanei]
Length = 626
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 31/140 (22%), Gaps = 23/140 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---- 58
+ + + + + + + GDFN + P+ + E
Sbjct: 488 RKLMKMFNEMKESEPERKCRLIFGGDFNSTP-DGAVFQMMSNRFLPNDHKVWECDEKIDA 546
Query: 59 ------------KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS------D 100
+ S + FV D + S I
Sbjct: 547 EDILIEKKMSCLTGTPEYTNYTASSQKEGFVGCLDYIWGIDVESIRICPSPDHKKVIKYT 606
Query: 101 LDTRRSKLSTHCPLTIEYDF 120
R S H P+ +
Sbjct: 607 ALPSRISPSDHLPVICDIKL 626
>gi|229077987|ref|ZP_04210596.1| Sphingomyelinase C [Bacillus cereus Rock4-2]
gi|228705325|gb|EEL57702.1| Sphingomyelinase C [Bacillus cereus Rock4-2]
Length = 333
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 35/136 (25%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPDGLLIRFPQE 58
Q + ++ + + I +I GD N + + ++ ++
Sbjct: 198 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENKNDSEYASMFKTLNASVPSYTGHTA 257
Query: 59 K-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
++T N I + + S + + + +
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPQSPQWTVTSWFQKYTY 317
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDYSDHYPVEATISMK 333
>gi|124003256|ref|ZP_01688106.1| endonuclease/exonuclease/phosphatase family [Microscilla marina
ATCC 23134]
gi|123991354|gb|EAY30785.1| endonuclease/exonuclease/phosphatase family [Microscilla marina
ATCC 23134]
Length = 982
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 14/128 (10%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFN-------RKINSIGDTD-DFWQKMDPDGLL 52
+ QQ E + + ++ GDFN + D Q D G
Sbjct: 259 VRQQQLEVMTNYLKSLRGD---VLLVGDFNMREGENVDILTEHQFEDVWPLQHPDDAGFS 315
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ + D + + +L + + + S H
Sbjct: 316 FHPDENPLAERFSRSGLPGRFDRMYLRSQSLQWLPQHIKLFAKAPIAQDYL---RASDHY 372
Query: 113 PLTIEYDF 120
+ YDF
Sbjct: 373 GVFAVYDF 380
>gi|116310953|emb|CAH67890.1| OSIGBa0153E02-OSIGBa0093I20.19 [Oryza sativa Indica Group]
Length = 1752
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 1/110 (0%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM-DPDGLLIRFPQEKESTCNVIK 67
L+ K G +++ GDFN + + E +
Sbjct: 734 LRHIRRLKPNAGEGWLLFGDFNIIYRARDKNNGNLNLARMRRFRATIDRCELHEIPLQNR 793
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
R S + + N +++ L + S HCPL +
Sbjct: 794 RFTWSNERQWPTLVKLDRCFCNENWDLAFHHHVLHALPTGPSDHCPLVLS 843
>gi|110680975|ref|YP_683982.1| hypothetical protein RD1_3833 [Roseobacter denitrificans OCh 114]
gi|109457091|gb|ABG33296.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 227
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 25/118 (21%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + L++ + P ++AGDFN + +++D S
Sbjct: 130 RKQVDVLRQVLQDR---PHPVILAGDFN---------EWNLKRLDFGTDAQVVSPG-LSF 176
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + + S ++ S H P+ I D
Sbjct: 177 HAARPRAALDRFVLGPGVRVVSSHVHKSNL------------AARASDHLPIVITVDL 222
>gi|75765927|pdb|1ZWX|A Chain A, Crystal Structure Of Smcl
Length = 301
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 36/130 (27%), Gaps = 16/130 (12%)
Query: 1 MLSQQGEWLKKWA-DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+ ++Q + ++ + + I I GD N + D + ++ Q
Sbjct: 167 IRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYHD-MLKLLNVSSPANFNGQMA 225
Query: 60 ESTCNVIKR--------NKSSLDYFVIDRDNK--NFLIDNSFSIVSYDQSDLDTRRSKL- 108
LDY ++ + + + S S ++
Sbjct: 226 TWDPTTNSMLKESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTY 285
Query: 109 ---STHCPLT 115
S H P+
Sbjct: 286 QDFSDHYPVV 295
>gi|291298485|ref|YP_003509763.1| endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
gi|290567705|gb|ADD40670.1| Endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
Length = 327
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 26/106 (24%), Gaps = 14/106 (13%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
G P ++AGDFN ++ D + F
Sbjct: 235 DGTPRILAGDFNATLDHRILRDLIAMGYTDA---ADATGSGLTGTWPT------DKNFPP 285
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ L + +Y + S H LT K +
Sbjct: 286 KVTIDHVLTSTGITPTTYATHTIPN-----SDHRALTTTMTLPKPD 326
>gi|255561291|ref|XP_002521656.1| ap endonuclease, putative [Ricinus communis]
gi|223539047|gb|EEF40643.1| ap endonuclease, putative [Ricinus communis]
Length = 586
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 15/156 (9%), Positives = 33/156 (21%), Gaps = 46/156 (29%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKIN-------SIGDTDDFWQKMDPD----------GL 51
L+K + ++ G + GD N + ++ +
Sbjct: 145 LQKRWESLLQQGRRIFVVGDLNIAPTAMDRCDADPDFEKNEFRIWFRSMLVKSGGPFFDV 204
Query: 52 LIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL--------- 101
+ +E+ + + D+ + D
Sbjct: 205 FRSKHPDRREAYTCWPSNTGAEQFNYGTRIDHILCAGPCLHQEHDFQVHDFVSCHMKDCD 264
Query: 102 ---DTRRSKL----------------STHCPLTIEY 118
D +R K S H P+
Sbjct: 265 ILIDYKRWKPGDTMRWKGGWGTKLEGSDHAPVYTSL 300
>gi|207347830|gb|EDZ73883.1| YBL019Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 442
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 12/91 (13%), Positives = 24/91 (26%), Gaps = 3/91 (3%)
Query: 29 FNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID 88
FN+ + D + + D + + + + +L L+
Sbjct: 275 FNQILADSLLPDASKRGILIDTTRLIQTRNRLKM-YTVWNMLKNLRPSNYGSRIDFILVS 333
Query: 89 NSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L S HCP+ + D
Sbjct: 334 LKLERCIKTADILP--DILGSDHCPVYSDLD 362
>gi|270015566|gb|EFA12014.1| hypothetical protein TcasGA2_TC005295 [Tribolium castaneum]
Length = 516
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 10/107 (9%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
D + P + AGDFN K + + + + + E + + +
Sbjct: 300 LDIIMNGNTPTLCAGDFNSK-----NKNWKCKSDNKKRKDLAKYTENRNLTVIAPTEPTH 354
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +I N + + + S H P+ IE
Sbjct: 355 IPSNGNADILDIAIIKNITENIDCEILEHLN-----SDHYPVIIEIS 396
>gi|256391765|ref|YP_003113329.1| endonuclease/exonuclease/phosphatase [Catenulispora acidiphila DSM
44928]
gi|256357991|gb|ACU71488.1| Endonuclease/exonuclease/phosphatase [Catenulispora acidiphila DSM
44928]
Length = 571
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 35/119 (29%), Gaps = 11/119 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM--DPDGLLIRFPQEKEST 62
+ + L + GIP V+ GDFN + + M P G Q ++
Sbjct: 193 EAQKLASLVRPWQEAGIPVVLGGDFNASATTSTLDSFYQPGMAGSPHGSFREADQTDKNY 252
Query: 63 CNV-------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--SDLDTRRSKLSTHC 112
N Y + + FS ++ D+ R +S H
Sbjct: 253 FNTSICTATQSDCRSGEPTYVDLTSQATKKIDYLFFSQNAFTNVSGDVLARDVTVSDHR 311
>gi|296826702|ref|XP_002851020.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Arthroderma otae CBS 113480]
gi|238838574|gb|EEQ28236.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Arthroderma otae CBS 113480]
Length = 703
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 31/126 (24%), Gaps = 25/126 (19%)
Query: 18 KTGIPFVIAGDFNRKINS---------------IGDTDDFWQKMDPDGLLIRFP------ 56
+ IP ++ GDFN + +S + + + G+ F
Sbjct: 553 ASQIPTLVCGDFNSRPSSAVYNLLAHGRLEEDHPDLQNRLYGNLTRQGMTHPFTLKSAYS 612
Query: 57 -QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCP 113
+ S N +DY + Y S H
Sbjct: 613 AIGELSFTNYTPGFTDVIDYIWYSSNLLQVTGLLGEVDKEYLQRVPGFPNY-HFPSDHLA 671
Query: 114 LTIEYD 119
L E+
Sbjct: 672 LMAEFS 677
>gi|229177202|ref|ZP_04304590.1| Sphingomyelinase C [Bacillus cereus 172560W]
gi|228606262|gb|EEK63695.1| Sphingomyelinase C [Bacillus cereus 172560W]
Length = 333
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 35/136 (25%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPDGLLIRFPQE 58
Q + ++ + + I +I GD N + + ++ ++
Sbjct: 198 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENKNDSEYASMFKTLNASVPSYTGHTA 257
Query: 59 K-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
++T N I + + S + + + +
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPQSPQWTVTSWFQKYTY 317
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDYSDHYPVEATISMK 333
>gi|229188882|ref|ZP_04315915.1| Sphingomyelinase C [Bacillus cereus ATCC 10876]
gi|228594587|gb|EEK52373.1| Sphingomyelinase C [Bacillus cereus ATCC 10876]
Length = 333
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 35/136 (25%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPDGLLIRFPQE 58
Q + ++ + + I +I GD N + + ++ ++
Sbjct: 198 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENKNDSEYASMFKTLNASVPSYTGHTA 257
Query: 59 K-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
++T N I + + S + + + +
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPQSPQWTVTSWFQKYMY 317
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDYSDHYPVEATISMK 333
>gi|254469348|ref|ZP_05082753.1| endonuclease/exonuclease/phosphatase family protein [Pseudovibrio
sp. JE062]
gi|211961183|gb|EEA96378.1| endonuclease/exonuclease/phosphatase family protein [Pseudovibrio
sp. JE062]
Length = 362
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 29/135 (21%), Gaps = 35/135 (25%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIG------------------------------DTDDFW 43
K+ V AGDFN + D W
Sbjct: 229 RAKLPEDANVVAAGDFNFNCTDVQNGEFQALAREGHWSYPPEIVGCAAPGSAFYYRDQSW 288
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+D + +++S S + +D +
Sbjct: 289 SFLDMILVSSALRPDQDSNSTWFADLGSFHTVVTHPSQYAQDARNK-VRPKRFDADN--- 344
Query: 104 RRSKLSTHCPLTIEY 118
S H P+ + +
Sbjct: 345 -NQGASDHWPVLMRF 358
>gi|206967557|ref|ZP_03228513.1| sphingomyelin phosphodiesterase C [Bacillus cereus AH1134]
gi|206736477|gb|EDZ53624.1| sphingomyelin phosphodiesterase C [Bacillus cereus AH1134]
Length = 333
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 35/136 (25%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPDGLLIRFPQE 58
Q + ++ + + I +I GD N + + ++ ++
Sbjct: 198 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENKNDSEYASMFKTLNASVPSYTGHTA 257
Query: 59 K-ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL--------- 108
++T N I + + S + + + +
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPQSPQWTVTSWFQKYTY 317
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDYSDHYPVEATISMK 333
>gi|94501571|ref|ZP_01308088.1| hypothetical protein RED65_08314 [Oceanobacter sp. RED65]
gi|94426254|gb|EAT11245.1| hypothetical protein RED65_08314 [Oceanobacter sp. RED65]
Length = 275
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 32/121 (26%), Gaps = 22/121 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L + I+T V+ GD N + + + +E +
Sbjct: 173 RTQQRQL-AFVQTLIETYPQVVLMGDMNTHADYLLGQSPLSELGLQP-----ITKELATF 226
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + L+ + D+ +S H P+ +E
Sbjct: 227 PSWKPKRA-----------LDHILVSEGVQVKRLAVLDVA-----VSDHLPIAMEIALPD 270
Query: 123 G 123
Sbjct: 271 A 271
>gi|38344432|emb|CAE05638.2| OSJNBa0038O10.4 [Oryza sativa Japonica Group]
Length = 1045
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 1/110 (0%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM-DPDGLLIRFPQEKESTCNVIK 67
L+ K G +++ GDFN + + E +
Sbjct: 126 LRHIRRLKPNAGEGWLLFGDFNIIYRARDKNNGNLNLARMRRFRATIDRCELHEIPLQNR 185
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
R S + + N +++ L + S HCPL +
Sbjct: 186 RFTWSNERQWPTLVKLDRCFCNENWDLAFHHHVLHALPTGPSDHCPLVLS 235
>gi|66824957|ref|XP_645833.1| hypothetical protein DDB_G0269266 [Dictyostelium discoideum AX4]
gi|60474046|gb|EAL71983.1| hypothetical protein DDB_G0269266 [Dictyostelium discoideum AX4]
Length = 1099
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 13/97 (13%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN N+ + + + L
Sbjct: 85 IIAGDFNADHNNNSHYGIGIRSIIEESNLKDIGANNNIATFSRSN-----------SRLD 133
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ V + + S H P++I+
Sbjct: 134 RIYCKPTM--VGSNPLRVHEDIYNKSDHTPISIDLKM 168
>gi|239940757|ref|ZP_04692694.1| hypothetical protein SrosN15_07158 [Streptomyces roseosporus NRRL
15998]
gi|239987235|ref|ZP_04707899.1| hypothetical protein SrosN1_08017 [Streptomyces roseosporus NRRL
11379]
gi|291444196|ref|ZP_06583586.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291347143|gb|EFE74047.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 341
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 12/116 (10%), Positives = 25/116 (21%), Gaps = 21/116 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ L + + V+ GD N +N Q G +
Sbjct: 247 SADALGEAIAD--ERVERVVLLGDLNGTMNDRSLNAVTAQMRSTQG----AAGDGFGFSW 300
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +D ++ + S H P+ +
Sbjct: 301 PASFPMARIDQIMVKGVEPMASWTLAA---------------TGSDHLPIAARVEL 341
>gi|189096065|pdb|2UYR|X Chain X, Crystal Structure Of Bacillus Cereus Sphingomyelinase
Mutant :n57a
Length = 306
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 33/136 (24%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I +I GD N N+ + ++ ++
Sbjct: 171 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTA 230
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + S ++ + S+ Q
Sbjct: 231 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTY 290
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 291 NDYSDHYPVEATISMK 306
>gi|154149223|ref|YP_001406798.1| putative endonuclease/exonuclease/phosphatase [Campylobacter
hominis ATCC BAA-381]
gi|153805232|gb|ABS52239.1| putative endonuclease/exonuclease/phosphatase [Campylobacter
hominis ATCC BAA-381]
Length = 437
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 9/113 (7%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
++ V+ GDFN S +D + + L S + ++ +
Sbjct: 168 LSSVLRNVKNVVVLGDFNTNYGSDSLLNDIINRYNLVDLWKFL----PSIERISHQSGRA 223
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
+D+ ++ +D + ++ S+ D + + S H P+ K N+
Sbjct: 224 IDHILLSQD-FFKNVTLNYKDESFGVFDENFKN---SDHLPIFFTIS-SKPNI 271
>gi|51556247|ref|NP_991322.1| endonuclease/exonuclease/phosphatase family domain-containing
protein 1 [Danio rerio]
gi|82187405|sp|Q6TEQ0|EEPD1_DANRE RecName: Full=Endonuclease/exonuclease/phosphatase family
domain-containing protein 1
gi|37682097|gb|AAQ97975.1| KIAA1706-like protein [Danio rerio]
Length = 550
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 14/116 (12%), Positives = 29/116 (25%), Gaps = 14/116 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIG---DTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ +K ++ G F +S + + +
Sbjct: 416 VQETLKGERDLLVMGHFGVAPDSSEMEILRKEKLSALLAPSVFTNISTRTPQGS------ 469
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSI----VSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
SLD R + + + D + S HCP+ E+ +
Sbjct: 470 -RSLDNIWASRSLRKTYTGQCSVVREGLTNPWIPDNWSWGGVASEHCPVVAEFFLD 524
>gi|42571097|ref|NP_973622.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
thaliana]
gi|330254306|gb|AEC09400.1| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
Length = 398
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 35/135 (25%), Gaps = 25/135 (18%)
Query: 15 QKIKTGIPFVIAGDFN-------RKINSIGDTDDF-------WQKMDPDGLLIRFPQEKE 60
+ I + GD N + + D + G + + +E +
Sbjct: 213 ETIMDHDKVIWLGDLNYRLRASSDLHEQLRNHDWESLLEKDQLKIEQRAGRIFKGWEEGK 272
Query: 61 STCNVIKRNKSSLDY-------FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ + + D R + + Q SK S H P
Sbjct: 273 IYFAPTYKYRINSDNYVVQTEKSKEKRRTPAWCDRILWKGDGMKQLWYVRGESKFSDHRP 332
Query: 114 L----TIEYDFEKGN 124
+ ++ D + +
Sbjct: 333 VQSLFSVHIDLKNQS 347
>gi|323448897|gb|EGB04790.1| hypothetical protein AURANDRAFT_72441 [Aureococcus anophagefferens]
Length = 2282
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 16/149 (10%), Positives = 27/149 (18%), Gaps = 37/149 (24%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ----------- 57
L +++ G P+V+ GDFN K + P
Sbjct: 1978 LAAERAKRVAAGRPYVLCGDFNVKPYDASYALLTSGALGEAFAAYAPPPQADVAPARAFA 2037
Query: 58 ----------------EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS--------- 92
+ N +
Sbjct: 2038 PVLEPPLTSAYAAATGAEPDFTNFAYTKPMGGERDAFVETLDYIFCSAGQWKVAGVKELR 2097
Query: 93 -IVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
D S + S H L + +
Sbjct: 2098 SKHGLDTSKPYPTADEPSDHVMLAADLEL 2126
>gi|300715428|ref|YP_003740231.1| Endonuclease/exonuclease/phosphatase family protein [Erwinia
billingiae Eb661]
gi|299061264|emb|CAX58373.1| Endonuclease/exonuclease/phosphatase family protein [Erwinia
billingiae Eb661]
Length = 267
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 21/105 (20%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q I P ++AGDFN Q+++ R +E + R K+
Sbjct: 176 EQIIHHRGPVIMAGDFNA---------WSRQRINALYTFARDMGLEEVSFTDDHRRKAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + S + + S H PL +E+
Sbjct: 227 RPLDFVFYRGLGVAEASVLVT------------RASDHNPLLVEF 259
>gi|260172872|ref|ZP_05759284.1| Endonuclease/exonuclease/phosphatase [Bacteroides sp. D2]
gi|315921155|ref|ZP_07917395.1| endonuclease/exonuclease/phosphatase [Bacteroides sp. D2]
gi|313695030|gb|EFS31865.1| endonuclease/exonuclease/phosphatase [Bacteroides sp. D2]
Length = 264
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 27/119 (22%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD----TDDFWQKMDPDGLLIRFPQEK 59
+Q + + +Q P ++ GD N + S +
Sbjct: 166 KQIDEILACMEQL---DKPIILGGDLNSRRGSATMAVFQKYFTVNCLSDAAPWTVPVPSP 222
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
TC+ + + +F++ +Y+ + S H P+ Y
Sbjct: 223 TYTCDW-----------------LIYAPNEAFTVKAYNVCYWADKE---SDHYPVVATY 261
>gi|297720519|ref|NP_001172621.1| Os01g0814200 [Oryza sativa Japonica Group]
gi|255673812|dbj|BAH91351.1| Os01g0814200 [Oryza sativa Japonica Group]
Length = 170
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 9/81 (11%), Positives = 15/81 (18%)
Query: 38 DTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
D + F S R + +
Sbjct: 45 IERDAGRVFKGWNEGKIFFAPTYKYSYNSDAYASETATSNKKRRTPAWCDRILWRGDGIL 104
Query: 98 QSDLDTRRSKLSTHCPLTIEY 118
Q S+ S H P+ +
Sbjct: 105 QLSYYRGESRFSDHRPVCGTF 125
>gi|254784446|ref|YP_003071874.1| histidine kinase [Teredinibacter turnerae T7901]
gi|237684162|gb|ACR11426.1| histidine kinase [Teredinibacter turnerae T7901]
Length = 257
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 9/132 (6%), Positives = 34/132 (25%), Gaps = 27/132 (20%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDG 50
+ + + F+ G++ + + ++++
Sbjct: 131 QALLHKVTRKRRHFIFCGNWAMAHSKKDVENWQNNTNQSGYLPHEQQWMNQLFRQLGYAD 190
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-S 109
E S ++ + ++ +++ S
Sbjct: 191 AFRVAVPEAGEYSWW----PSGKIGEGDGWRTDYQVVSEA---LTRKVEYAAMYKTRHFS 243
Query: 110 THCPLTIEYDFE 121
+H P+ ++YD +
Sbjct: 244 SHLPVIVDYDID 255
>gi|242827049|ref|XP_002488758.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
gi|218712150|gb|EED11577.1| reverse transcriptase, putative [Talaromyces stipitatus ATCC 10500]
Length = 951
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 13/113 (11%)
Query: 13 ADQKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+ +++ GDFNR D+ ++ R Q +
Sbjct: 593 LQTAMAPRAQYIVLGDFNRHHPLWAGTRYQHVDEEATELIDLMDEHRLEQLLPPGTITYE 652
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R + D + + +V+ D + H P+ ++D
Sbjct: 653 RANA-----KSTIDLVWASHNLANRVVNCDTKREWWYGA---DHVPILTQFDL 697
>gi|99032047|pdb|2DDR|A Chain A, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Calcium Ion
gi|99032048|pdb|2DDR|B Chain B, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Calcium Ion
gi|99032049|pdb|2DDR|C Chain C, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Calcium Ion
gi|99032050|pdb|2DDR|D Chain D, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Calcium Ion
gi|99032051|pdb|2DDS|A Chain A, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Cobalt Ion
gi|99032052|pdb|2DDS|B Chain B, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Cobalt Ion
gi|99032053|pdb|2DDS|C Chain C, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Cobalt Ion
gi|99032054|pdb|2DDS|D Chain D, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Cobalt Ion
gi|99032055|pdb|2DDT|A Chain A, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Magnesium Ion
gi|99032056|pdb|2DDT|B Chain B, Crystal Structure Of Sphingomyelinase From Bacillus Cereus
With Magnesium Ion
Length = 306
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 33/136 (24%), Gaps = 19/136 (13%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I +I GD N N+ + ++ ++
Sbjct: 171 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTA 230
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
+ + S ++ + S+ Q
Sbjct: 231 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTY 290
Query: 109 ---STHCPLTIEYDFE 121
S H P+ +
Sbjct: 291 NDYSDHYPVEATISMK 306
>gi|290976084|ref|XP_002670771.1| predicted protein [Naegleria gruberi]
gi|284084333|gb|EFC38027.1| predicted protein [Naegleria gruberi]
Length = 551
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 31/117 (26%), Gaps = 5/117 (4%)
Query: 3 SQQGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q + + + GDFN + + P QE
Sbjct: 437 EKQVNEILNQIGKIADPQKTSIIWFGDFNTSPHEKPIQLIEACESIPLQKSHDTVQE-FW 495
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
TC S +DY + +S + + S H PL E+
Sbjct: 496 TCCGTTGRNSIVDYIWHSPSL---QVKDSGPCLEFVPKSSIPDEDHGSDHLPLFAEF 549
>gi|255011809|ref|ZP_05283935.1| hypothetical protein Bfra3_21905 [Bacteroides fragilis 3_1_12]
gi|313149648|ref|ZP_07811841.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313138415|gb|EFR55775.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 678
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 13/122 (10%), Positives = 29/122 (23%), Gaps = 15/122 (12%)
Query: 13 ADQKIKTGIPFVIAGDFNRK-------------INSIGDTDDFWQKMDPDGLLIRFPQEK 59
+T +P +I GDFN + M +G F ++
Sbjct: 555 IVPNQETDMPVIITGDFNSCSHLDWTERAKPLHHGYGPVAFPASRYMLENGFKDSFREKN 614
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPLTIE 117
+++ + ++S S H +
Sbjct: 615 PDEVAYQGGTVAAIYGQMQMSRIDFIYYKGGLKVLSSKIVRTAPEIDYVWASDHAAVLTV 674
Query: 118 YD 119
++
Sbjct: 675 FE 676
>gi|196000682|ref|XP_002110209.1| predicted protein [Trichoplax adhaerens]
gi|190588333|gb|EDV28375.1| predicted protein [Trichoplax adhaerens]
Length = 213
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 40/114 (35%), Gaps = 10/114 (8%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDT-DDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
W K++ V+AGD N + + DD + E+ + R
Sbjct: 108 ANWVMAKLRNHEYVVVAGDTNMRNDENVSELDDTFLTAGQPADHRFTMDGYENKGWWVDR 167
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ R ++ +L +N + + + + + +S H L ++ ++
Sbjct: 168 -----PFKWKCRYDRVYLRNNEWLLKDFRVD----KGNFISDHYCLKVQLQMKQ 212
>gi|163802061|ref|ZP_02195957.1| aspartyl-tRNA synthetase [Vibrio sp. AND4]
gi|159174202|gb|EDP59010.1| aspartyl-tRNA synthetase [Vibrio sp. AND4]
Length = 428
Score = 36.0 bits (81), Expect = 1.7, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 35/122 (28%), Gaps = 8/122 (6%)
Query: 5 QGEWLKKWADQK-IKTGIPFVIAGDFNRK-INSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q +K + +Q I G P ++ GDFN D ++ + P +
Sbjct: 304 QIYEIKAFLEQLSIPDGEPIILGGDFNIAKYKFPLDFSMLLDSLNLLEPELTGPLKYSYD 363
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ------SDLDTRRSKLSTHCPLTI 116
V D ++ + + + + LS H ++
Sbjct: 364 PLVNINLAGGDAAERERLDYLLYVDNGAIASSTAKIEVLRNFDAAMWGGWDLSDHHAVSS 423
Query: 117 EY 118
+
Sbjct: 424 TF 425
>gi|332970838|gb|EGK09817.1| endonuclease/exonuclease/phosphatase [Psychrobacter sp. 1501(2011)]
Length = 377
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+ ++AGD N S +Q++ + + Y +
Sbjct: 238 ENNQTAILAGDLNDVAWSKT--TLMFQRISGLLDPRIGRFFINTFH---------VKYPI 286
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + F++V D++ S S H P+ +E+
Sbjct: 287 LRWALDHIFHSPCFTLV-----DIERLPSIGSDHFPVMTTLQYEQ 326
>gi|224083729|ref|XP_002307102.1| predicted protein [Populus trichocarpa]
gi|222856551|gb|EEE94098.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 29/130 (22%), Gaps = 22/130 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI----------------- 53
+ A ++I + GD N ++ + + + L+
Sbjct: 291 RRAPERIVDHDRIIWLGDLNYRVALSYEETKVLLEDNDWDTLLEKDQLNIEREAGRVFEG 350
Query: 54 -----RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
R + + +Q R S+
Sbjct: 351 FKEGQILFAPTYKYTQNSDSYAGETVKSRRKRRTPAWCDRILWRGDGIEQLSYVRRESRF 410
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 411 SDHRPVCAVF 420
>gi|222086336|ref|YP_002544869.1| endonuclease/exonuclease/phosphatase family protein [Agrobacterium
radiobacter K84]
gi|221723784|gb|ACM26940.1| endonuclease/exonuclease/phosphatase family protein [Agrobacterium
radiobacter K84]
Length = 370
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 10/84 (11%), Positives = 22/84 (26%), Gaps = 7/84 (8%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY----DQS 99
++D L +++ C + S + + + +
Sbjct: 286 DELDRWTLYHARGPQEQWLCQLDYIWLSPALARANAARLPDVVRSGQPFRTIFPPGQEVE 345
Query: 100 DLDTRRS---KLSTHCPLTIEYDF 120
K S HCP+ + D
Sbjct: 346 RYPRTGWDRPKASDHCPIVMTLDL 369
>gi|161524628|ref|YP_001579640.1| endonuclease/exonuclease/phosphatase [Burkholderia multivorans ATCC
17616]
gi|189350616|ref|YP_001946244.1| metal-dependent hydrolase [Burkholderia multivorans ATCC 17616]
gi|160342057|gb|ABX15143.1| Endonuclease/exonuclease/phosphatase [Burkholderia multivorans ATCC
17616]
gi|189334638|dbj|BAG43708.1| metal-dependent hydrolase [Burkholderia multivorans ATCC 17616]
Length = 285
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 11/104 (10%), Positives = 24/104 (23%), Gaps = 7/104 (6%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTD---DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++ GDFN +S I + + + +
Sbjct: 184 AQSRDAILCGDFNSAFDSAAYRRMLEPIDGAPAFVDAWIAQHPGRTAPPTAGVYDTAQWS 243
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ D + + + S H P+ +E
Sbjct: 244 DGPLACDFAFVTDTLLPRLARCEID----GAVRASDHQPIVLEL 283
>gi|50119211|ref|YP_048378.1| endonuclease/exonuclease/phosphatase family protein [Pectobacterium
atrosepticum SCRI1043]
gi|49609737|emb|CAG73171.1| endonuclease/Exonuclease/phosphatase family protein [Pectobacterium
atrosepticum SCRI1043]
Length = 392
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 36/140 (25%), Gaps = 23/140 (16%)
Query: 3 SQQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSI-GDTDDFWQKMDPDGLLIRFPQEKE 60
Q E + + Q VI GD N ++ + D ++ EKE
Sbjct: 251 RDQSERVAEIVQQTYDLKKDYVVILGDLNEDSSNPWQSLAPLFSLSDLHPVIDPERPEKE 310
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV------SYDQSDLDTR---------- 104
K +D + + + Y+ + +
Sbjct: 311 RYTYYFSGGKKGARLNQLDYIFLSAPLHQAVVEWGVERRGIYNIDKIAAKEGAEPVTPLP 370
Query: 105 -----RSKLSTHCPLTIEYD 119
+ S H L +E D
Sbjct: 371 EVTSWDTAASDHAALWVEVD 390
>gi|326433914|gb|EGD79484.1| hypothetical protein PTSG_12983 [Salpingoeca sp. ATCC 50818]
Length = 504
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 9/100 (9%), Positives = 27/100 (27%), Gaps = 5/100 (5%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ ++++ + +P ++ GDFN +S G + + ++ + +
Sbjct: 367 KAIREFLQENKLLDVPVMLMGDFNSMPDS-GVYEFLATGKINPNHPDMQGYDYKAFFDSV 425
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ + F D
Sbjct: 426 GTTHPFKLRSAYTTEMQYTNKTAGF----VGIIDYIWYTE 461
>gi|315918688|ref|ZP_07914928.1| endonuclease/exonuclease/phosphatase family [Bacteroides sp. D2]
gi|313692563|gb|EFS29398.1| endonuclease/exonuclease/phosphatase family [Bacteroides sp. D2]
Length = 289
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 28/119 (23%), Gaps = 20/119 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-TDDFWQKMDPDGLLIRFPQEKES 61
+ L K K P GDFN ++ T + D Q
Sbjct: 188 KHACQMLVDAVSDKAKDNTPAFCTGDFNATPDAPEIATTICQSGILKDAYREAAVQHGAL 247
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP--LTIEY 118
+ ++ + + S LS H P + +E
Sbjct: 248 FTFPS-----------KKTRIDFIFVKHATVLSTRTIV------SSLSDHYPMVIVVEI 289
>gi|162457539|ref|YP_001619906.1| hypothetical protein sce9253 [Sorangium cellulosum 'So ce 56']
gi|161168121|emb|CAN99426.1| hypothetical protein sce9253 [Sorangium cellulosum 'So ce 56']
Length = 231
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 28/120 (23%), Gaps = 12/120 (10%)
Query: 3 SQQGEWLKKWA-DQKIKTGIP-FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ L +A ++ K+G V+ GDFN + + L
Sbjct: 120 ARTVRELVSFAARERQKSGSHGAVLMGDFNALPSEEAVCYLQASAGNGSWLDAWTQAHPG 179
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ R + + + + S H +
Sbjct: 180 KAGGTWP-------AGLPLRRIDYVFVQPG---EGWAITRCERAPFSGSDHLGVAAWLRL 229
>gi|299145528|ref|ZP_07038596.1| putative endonuclease/exonuclease/phosphatase family protein
[Bacteroides sp. 3_1_23]
gi|298516019|gb|EFI39900.1| putative endonuclease/exonuclease/phosphatase family protein
[Bacteroides sp. 3_1_23]
Length = 289
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 28/119 (23%), Gaps = 20/119 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD-TDDFWQKMDPDGLLIRFPQEKES 61
+ L K K P GDFN ++ T + D Q
Sbjct: 188 KHACQMLVDAVSDKAKDNTPAFCTGDFNATPDAPEIATTICQSGILKDAYREAAVQHGAL 247
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP--LTIEY 118
+ ++ + + S LS H P + +E
Sbjct: 248 FTFPS-----------KKTRIDFIFVKHATVLSTRTIV------SSLSDHYPMVIVVEI 289
>gi|228963775|ref|ZP_04124916.1| Sphingomyelinase C [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228795920|gb|EEM43387.1| Sphingomyelinase C [Bacillus thuringiensis serovar sotto str.
T04001]
Length = 333
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 14/137 (10%), Positives = 32/137 (23%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I +I GD N + + ++ ++
Sbjct: 198 QLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINTENKNDSEYASMFKTLNASVPSYTGHTA 257
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 258 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPPYIENKVLQPKSPQWTVTSWFQKYTY 317
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 318 NDY-SDHYPVEATISMK 333
>gi|167569725|ref|ZP_02362599.1| endonuclease/exonuclease/phosphatase family superfamily protein
[Burkholderia oklahomensis C6786]
Length = 286
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 10/102 (9%), Positives = 22/102 (21%), Gaps = 1/102 (0%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
++ GDFN S F + +
Sbjct: 184 ARAADAIVCGDFNSAYRSDAYRR-FLAPFPDAPRFVDAWLARHPGETPPMTAGVYDTEQW 242
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + +++ + S H P+ +E
Sbjct: 243 KEGPLTCDFAFVTDTLIGRLSRCEIDGAVRASDHQPIALELS 284
>gi|307329480|ref|ZP_07608641.1| Endonuclease/exonuclease/phosphatase [Streptomyces violaceusniger
Tu 4113]
gi|306884889|gb|EFN15914.1| Endonuclease/exonuclease/phosphatase [Streptomyces violaceusniger
Tu 4113]
Length = 368
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 16/113 (14%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
L+ +A + P +IAGDFN + + +
Sbjct: 267 RLRSYAAGR--GEEPTLIAGDFNATQDHAAFRAVLDTGLRDSARATGVSRTPSWPSATAP 324
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +D+ + R + + H L +E D
Sbjct: 325 VLGAQIDHVLASRALRPR--------------TARFLELPHTDHRALLVELDL 363
>gi|294812176|ref|ZP_06770819.1| Endonuclease/exonuclease/phosphatase [Streptomyces clavuligerus
ATCC 27064]
gi|326440668|ref|ZP_08215402.1| hypothetical protein SclaA2_06358 [Streptomyces clavuligerus ATCC
27064]
gi|294324775|gb|EFG06418.1| Endonuclease/exonuclease/phosphatase [Streptomyces clavuligerus
ATCC 27064]
Length = 251
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 13/124 (10%), Positives = 23/124 (18%), Gaps = 20/124 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + + AGD N + D L R + +
Sbjct: 142 QAGLVLERLTALGAPH--TLAAGDVNEPPPGRAFRRLAGRLQDCRALAPRGGEHTFPSTA 199
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-----DLDTRRSKLSTHCPLTIEYD 119
+R ++ S H P+
Sbjct: 200 PRRR-------------IDAVFASAEVEVLGCGVPLDLPGVTAADLRAASDHLPVLAALR 246
Query: 120 FEKG 123
G
Sbjct: 247 LPAG 250
>gi|149923487|ref|ZP_01911890.1| hypothetical protein PPSIR1_41059 [Plesiocystis pacifica SIR-1]
gi|149815678|gb|EDM75207.1| hypothetical protein PPSIR1_41059 [Plesiocystis pacifica SIR-1]
Length = 343
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 18/135 (13%), Positives = 35/135 (25%), Gaps = 20/135 (14%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L + K V+ GDFN T ++D + S
Sbjct: 200 QWPALVEAVRGLSKRDPDHVVLGDFNSTGAPGEGTATEHAELDAALRPADLRRLPNSEGC 259
Query: 65 VIKRNKSSLDYFVIDRDNKNFLI--------------------DNSFSIVSYDQSDLDTR 104
+ + D + + + + ++ +
Sbjct: 260 SAYYDGARRDAWKEASEIDLVWVRGLEGALGADPAVHSGTHCAAHHCRDFRSTEAYPEPD 319
Query: 105 RSKLSTHCPLTIEYD 119
S LS HCP+ ++
Sbjct: 320 YSFLSDHCPVILDLR 334
>gi|160879679|ref|YP_001558647.1| endonuclease/exonuclease/phosphatase [Clostridium phytofermentans
ISDg]
gi|160428345|gb|ABX41908.1| Endonuclease/exonuclease/phosphatase [Clostridium phytofermentans
ISDg]
Length = 367
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 36/137 (26%), Gaps = 20/137 (14%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFN-RKINSIG--DTDDFWQKMDPDGLLIRFPQ 57
++ Q + L + + G + GDFN + ++
Sbjct: 230 IVKNQIKMLSEDMKSDFEEGNYIICGGDFNQDLLGDSPSIFHTPTLEENWAKPFPSLLLP 289
Query: 58 --------------EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ T + + + FLI + + S + D
Sbjct: 290 SGITVAYDLLSDELRGKLTPSCRNADSPYIKETSFVTMVDGFLISTNVQLNSIETID--- 346
Query: 104 RRSKLSTHCPLTIEYDF 120
S H P+ +++
Sbjct: 347 NGFLYSDHNPVIMKFQL 363
>gi|115448717|ref|NP_001048138.1| Os02g0751900 [Oryza sativa Japonica Group]
gi|46390223|dbj|BAD15654.1| putative inositol polyphosphate 5-phosphatase I [Oryza sativa
Japonica Group]
gi|113537669|dbj|BAF10052.1| Os02g0751900 [Oryza sativa Japonica Group]
Length = 566
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 38/143 (26%), Gaps = 30/143 (20%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF--------------- 55
+ KI + GD N ++ D+ M +
Sbjct: 398 QRIPDKILDHDRVIWLGDLNYRVALS--YDETKTLMGENDWDTLLEKDQLMIERQAGRVF 455
Query: 56 --PQEKESTCNVIKRNKSSLD-------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+E + + K + D R + + +Q S
Sbjct: 456 KGWKEGKIYFAPTYKYKQNSDSYAGETAKSKKKRRTPAWCDRILWHGQGIEQLQYIRGES 515
Query: 107 KLSTHCPL----TIEYDFEKGNV 125
+ S H P+ IE D + G++
Sbjct: 516 RFSDHRPVCSVFVIEADVDNGSM 538
>gi|300704421|ref|YP_003746024.1| hypothetical protein RCFBP_20225 [Ralstonia solanacearum CFBP2957]
gi|299072085|emb|CBJ43417.1| conserved protein of unknown function,
endonuclease/exonuclease/phosphatase family [Ralstonia
solanacearum CFBP2957]
Length = 289
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 24/105 (22%), Gaps = 4/105 (3%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDF--WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ VI GDFN K +S + +
Sbjct: 184 LAQTHATVICGDFNCKPDSTPKRLATVPFSHETATLYDAWEVAHGPAPQPPTFGVHDRAG 243
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ LI ++ S H P+ +E +
Sbjct: 244 WTEPAYACDFMLISEPLKTRVARVEVNSV--TQASDHQPMLLELN 286
>gi|259144689|emb|CAY77630.1| Ccr4p [Saccharomyces cerevisiae EC1118]
Length = 841
Score = 36.0 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 38/153 (24%), Gaps = 33/153 (21%)
Query: 5 QGEWLKKWADQKIKTGI-----------PFVIAGDFNRKINSIGDT--DDFWQKMDPDGL 51
Q L + +K P +I GDFN INS + ++ +G
Sbjct: 683 QVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVYELINTGRVQIHQEGN 742
Query: 52 LIRF-------------------PQEKESTCNVIKRNKSSLDYFVI-DRDNKNFLIDNSF 91
F + N +DY + +
Sbjct: 743 GRDFGYMSEKNFSHNLALKSSYNCIGELPFTNFTPSFTDVIDYIWFSTHALRVRGLLGEV 802
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ S H PL ++F K N
Sbjct: 803 DPEYVSKFIGFPNDKFPSDHIPLLARFEFMKTN 835
>gi|262067673|ref|ZP_06027285.1| DNAse I protein DHP2 [Fusobacterium periodonticum ATCC 33693]
gi|291378397|gb|EFE85915.1| DNAse I protein DHP2 [Fusobacterium periodonticum ATCC 33693]
Length = 286
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 5/106 (4%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ K + +IAGDFN ++ D I + + +
Sbjct: 177 DYFQDKDRKENDILIAGDFNLYALDESFR-PMYKHKDKITYAIDPAIKTTIGT----KGR 231
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ S + + + D R +S H P+ I
Sbjct: 232 ANSYDNFFFSQKYTTEFTGSSGALDFSEKDPQLMRKIISDHIPVFI 277
>gi|224096215|ref|XP_002310578.1| predicted protein [Populus trichocarpa]
gi|222853481|gb|EEE91028.1| predicted protein [Populus trichocarpa]
Length = 561
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 13/129 (10%), Positives = 25/129 (19%), Gaps = 22/129 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNR----------KINSIGDTDDFW------------QKMDPD 49
A ++I + GD N + D D + +
Sbjct: 393 RATERIVDHDRIIWLGDLNYRVALSYEETKVLLEDKDWDTLLEKDQLNMEREAGRVFEGF 452
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
R + + +Q S+ S
Sbjct: 453 KEGRISFAPTYKYTQNSDSYAGENVKSKKKRRTPAWCDRILWRGDGIEQLSYIRGESRFS 512
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 513 DHRPVCAVF 521
>gi|110633851|ref|YP_674059.1| endonuclease/exonuclease/phosphatase [Mesorhizobium sp. BNC1]
gi|110284835|gb|ABG62894.1| Endonuclease/exonuclease/phosphatase [Chelativorans sp. BNC1]
Length = 370
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 7/83 (8%)
Query: 45 KMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY----DQSD 100
++D L E+ C + S + + + + + +
Sbjct: 287 ELDRWTLYHTRGPEERHLCQLDYILLSPALAQKNGKVMPDIVRNGQPWRTIFPPGQEVER 346
Query: 101 LDTRRS---KLSTHCPLTIEYDF 120
K S HCP+ I D
Sbjct: 347 YPRTGWDRPKASDHCPVAISLDL 369
>gi|333027558|ref|ZP_08455622.1| hypothetical protein STTU_5062 [Streptomyces sp. Tu6071]
gi|332747410|gb|EGJ77851.1| hypothetical protein STTU_5062 [Streptomyces sp. Tu6071]
Length = 349
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 28/122 (22%), Gaps = 21/122 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ E L K ++ T V+ GD N +N + Q G +
Sbjct: 249 DRSAEALGKAIREEPLTNK--VLVGDLNGTMNDRALSPVTSQLRSTQG----AAGKGFGF 302
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ +D S + S H P+
Sbjct: 303 SWPAGFPMARIDQI-----LVGGAEPVSSWTLPR----------TGSDHLPVAASIRLAS 347
Query: 123 GN 124
N
Sbjct: 348 TN 349
>gi|330466225|ref|YP_004403968.1| endonuclease/exonuclease/phosphatase [Verrucosispora maris
AB-18-032]
gi|328809196|gb|AEB43368.1| endonuclease/exonuclease/phosphatase [Verrucosispora maris
AB-18-032]
Length = 329
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 21/104 (20%), Gaps = 13/104 (12%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
G V+AGDFN ++ +
Sbjct: 233 PQGALSVLAGDFNATLDHGPLRALLRTGYVDAAAAVGAGLVGTWGPY------------- 279
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
ID+ D+ R S H + E
Sbjct: 280 DGDRIPPVTIDHVLVDRRIAVRDVSVRPLPGSDHRMILAELALP 323
>gi|328707589|ref|XP_003243437.1| PREDICTED: hypothetical protein LOC100572891 [Acyrthosiphon pisum]
Length = 1187
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 26/125 (20%), Gaps = 17/125 (13%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ TG P +I GDFN KI K + RN
Sbjct: 107 DRIYDALPTGKPKIILGDFNAKIGKEETYRPTIGK--DSLHSDTNDNGNKLITFATARNM 164
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQS---------------DLDTRRSKLSTHCPLT 115
+ + V S +S H +
Sbjct: 165 RISSTMFPHKKIHKQTWISPCGKVRNQIDHIMVDYRIRSSINDVRSMRGSSAVSDHFLVR 224
Query: 116 IEYDF 120
+ F
Sbjct: 225 AKVKF 229
>gi|323338887|gb|EGA80101.1| Ccr4p [Saccharomyces cerevisiae Vin13]
Length = 837
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 38/153 (24%), Gaps = 33/153 (21%)
Query: 5 QGEWLKKWADQKIKTGI-----------PFVIAGDFNRKINSIGDT--DDFWQKMDPDGL 51
Q L + +K P +I GDFN INS + ++ +G
Sbjct: 679 QVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVYELINTGRVQIHQEGN 738
Query: 52 LIRF-------------------PQEKESTCNVIKRNKSSLDYFVI-DRDNKNFLIDNSF 91
F + N +DY + +
Sbjct: 739 GRDFGYMSEKNFSHNLALKSSYNCIGELPFTNFTPSFTDVIDYIWFSTHALRVRGLLGEV 798
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ S H PL ++F K N
Sbjct: 799 DPEYVSKFIGFPNDKFPSDHIPLLARFEFMKTN 831
>gi|298373308|ref|ZP_06983297.1| AP endonuclease domain-containing protein [Bacteroidetes oral taxon
274 str. F0058]
gi|298274360|gb|EFI15912.1| AP endonuclease domain-containing protein [Bacteroidetes oral taxon
274 str. F0058]
Length = 370
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 36/115 (31%), Gaps = 21/115 (18%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + Q ++ D + V+ GDFN S + DGL F
Sbjct: 268 IRATQAAMVRATID---SSPYKSVVCGDFNDVTESYAYSKIK------DGLTDLF----- 313
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ R +Y + + LID+ +S + S H PL
Sbjct: 314 TATAWGYRYSFRSNY--MLVGIDHILIDHRLIPLSLTIDRKNY-----SDHYPLI 361
>gi|281343655|gb|EFB19239.1| hypothetical protein PANDA_014384 [Ailuropoda melanoleuca]
Length = 282
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 41/116 (35%), Gaps = 5/116 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D + K ++ GDFN + + + ++ + T
Sbjct: 165 EMDALYDVYLDVRQKWDLEDIMLMGDFNAGCSYVTPSQWASIRLRTSPAFQWLIPDTADT 224
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPLTI 116
+ + + V ++ ++ +S + + + + + +S H P+ +
Sbjct: 225 TS-TATHCAYDRIVVAGTLLQHAIVPDSATPFDFQAAYGLSSQLTQAISDHYPVEV 279
>gi|242088303|ref|XP_002439984.1| hypothetical protein SORBIDRAFT_09g023855 [Sorghum bicolor]
gi|241945269|gb|EES18414.1| hypothetical protein SORBIDRAFT_09g023855 [Sorghum bicolor]
Length = 542
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 33/130 (25%), Gaps = 26/130 (20%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF----------------- 55
+KI + GD N +I+ +D + + + F
Sbjct: 380 IPEKILDHERVIWLGDLNYRISLS--YEDTKKLLTENNWDALFEKDQLNIQRASGSVFKG 437
Query: 56 PQEKESTCNVIKRNKSSLDY-------FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
E++ + + D R + + Q S+
Sbjct: 438 WSEEKIYFAPTYKYSCNSDSYAGETATSKKKRRTPAWCDRILWHGDGIAQLSYFRGESQF 497
Query: 109 STHCPLTIEY 118
S H P+ +
Sbjct: 498 SDHRPVCGTF 507
>gi|242039785|ref|XP_002467287.1| hypothetical protein SORBIDRAFT_01g022750 [Sorghum bicolor]
gi|241921141|gb|EER94285.1| hypothetical protein SORBIDRAFT_01g022750 [Sorghum bicolor]
Length = 336
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 11/111 (9%), Positives = 27/111 (24%), Gaps = 13/111 (11%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---------KESTCNVI 66
+P+V GDFN + + + ++ ++
Sbjct: 161 HEALSLPWVCVGDFNEVLFAHEKEGGLVRSGVAMEQFREATEDCDLQDLGYVGDAFNWRN 220
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + +D + S H P+ +E
Sbjct: 221 NHHNAGSYIREWLDRALANTAWRWKFPLVQVINDDP----RHSDHRPVIME 267
>gi|38346419|emb|CAD40206.2| OSJNBa0019J05.4 [Oryza sativa Japonica Group]
gi|38346611|emb|CAD39801.2| OSJNBa0071G03.15 [Oryza sativa Japonica Group]
Length = 637
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 34/112 (30%), Gaps = 6/112 (5%)
Query: 12 WADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV---IK 67
W +I ++ GDFN ++ + M+ + +
Sbjct: 67 WLKNIQIDAQQNWLFLGDFNFYRSTYD-RNKVGADMNDIFIFNEIISSLGLLEIPLKGRR 125
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
S++ + S+ +++ + + +S H P ++ D
Sbjct: 126 FTWSNMQQNPLLERLDWVFTSASW-TLTFPNTTVIPLTRNISDHVPCVVKID 176
>gi|332322149|emb|CCA66140.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1381
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 2/95 (2%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P +I GDFN +NS + F Q + + +
Sbjct: 135 PSLIIGDFNEVLNSSERRSLIASQ-SEMTKFRDFVQNLQLLEIPSSS-GGFTWFRGNSKS 192
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ L N ++ + L LS HCPL +
Sbjct: 193 LLDRLFINPEWLILFPGLKLSLLMRGLSDHCPLLV 227
>gi|301779081|ref|XP_002924947.1| PREDICTED: deoxyribonuclease-1-like [Ailuropoda melanoleuca]
Length = 284
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 41/116 (35%), Gaps = 5/116 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D + K ++ GDFN + + + ++ + T
Sbjct: 165 EMDALYDVYLDVRQKWDLEDIMLMGDFNAGCSYVTPSQWASIRLRTSPAFQWLIPDTADT 224
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--LSTHCPLTI 116
+ + + V ++ ++ +S + + + + + +S H P+ +
Sbjct: 225 TS-TATHCAYDRIVVAGTLLQHAIVPDSATPFDFQAAYGLSSQLTQAISDHYPVEV 279
>gi|302763635|ref|XP_002965239.1| hypothetical protein SELMODRAFT_451408 [Selaginella moellendorffii]
gi|300167472|gb|EFJ34077.1| hypothetical protein SELMODRAFT_451408 [Selaginella moellendorffii]
Length = 475
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 11/116 (9%), Positives = 25/116 (21%), Gaps = 18/116 (15%)
Query: 19 TGIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLIRFPQEKESTCNV------- 65
+ GD N +++ + W + L
Sbjct: 306 AHDRVLWLGDLNYRLSLSNGETKTLLESENWSALLQKDQLKLAQSVGGVFHGWQEGAIEF 365
Query: 66 --IKRNKSSLD---YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ K++ + + + Q + S H P+T
Sbjct: 366 APTYKYKANSTEYSNGGEKQRTPAWCDRVLWKGKGLRQINYYRTEYTFSDHRPVTA 421
>gi|229154133|ref|ZP_04282258.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus ATCC 4342]
gi|228629413|gb|EEK86115.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus ATCC 4342]
Length = 263
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+++ + + GDFN ++ G + + L ++ ++
Sbjct: 156 NRLMERVDSNELSFLMGDFNNNARLQGEGYEYMMQKGLYDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S + S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKHNLRIDLILCNRSEKVRSSKVIFNGTNRNIISDHFGVEVQVD 262
>gi|300118993|ref|ZP_07056704.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus SJ1]
gi|298723609|gb|EFI64340.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus SJ1]
Length = 263
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 10/120 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q L + D + + GDFN ++ G + + L E
Sbjct: 151 FKDQVNRLMERVD----SNELSFLMGDFNNNARLQGEGYEYMMQKGLYDTYELAIKKDEG 206
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + D + L + S I S T R +S H + ++ D
Sbjct: 207 TTVQ----GEIAGWDENKHNLRIDLILCNRSEKIRSSKVVFNGTNRKVISDHFGVEVQVD 262
>gi|297189953|ref|ZP_06907351.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
gi|297150325|gb|EDY62516.2| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 344
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 23/103 (22%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+ ++ GD N ++ G Q E + + +D
Sbjct: 265 EKEARVILLGDLNSTVDDRGLDPVLAQVGVAG--------EGFAFSWPASFPVARIDQ-- 314
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + + + + S H P+T
Sbjct: 315 -------------IMARSAAVTRVRSLPATGSDHLPITATITL 344
>gi|218442141|ref|YP_002380470.1| endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 7424]
gi|218174869|gb|ACK73602.1| Endonuclease/exonuclease/phosphatase [Cyanothece sp. PCC 7424]
Length = 447
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 31/117 (26%), Gaps = 16/117 (13%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ G FVI GD N N TD ++ + L+ N S
Sbjct: 301 LTPGSKFVIMGDQNADPNDGDSTDGAINQLLDNPLVNTSKTPSSLGGKEYSLNGSGNPNQ 360
Query: 77 VIDR-----------DNKNFLIDNSFSIVSYDQ-----SDLDTRRSKLSTHCPLTIE 117
+ L ++ I+ + + S H + ++
Sbjct: 361 NGNPAYDTAVFVGGLRVDYVLPSDNLKILDAQVFWPTENSPLASLNLASDHRAVYVD 417
>gi|86159084|ref|YP_465869.1| endonuclease/exonuclease/phosphatase [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775595|gb|ABC82432.1| Endonuclease/exonuclease/phosphatase [Anaeromyxobacter dehalogenans
2CP-C]
Length = 300
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 27/108 (25%), Gaps = 10/108 (9%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ AD+ ++ G V GD N + S + DG +
Sbjct: 200 EIADRLLRDGARVVAGGDLNDEAGS-----FALGPLFGDGAWVDPAAALPPDAAWTWSGG 254
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + V+ S H P+ ++
Sbjct: 255 GDRAALDHLAVPRADAASVVQAAVAGGTDVEA-----ASDHRPVVLDL 297
>gi|6319298|ref|NP_009381.1| Ccr4p [Saccharomyces cerevisiae S288c]
gi|308153426|sp|P31384|CCR4_YEAST RecName: Full=Glucose-repressible alcohol dehydrogenase
transcriptional effector; AltName: Full=Carbon
catabolite repressor protein 4; AltName:
Full=Cytoplasmic deadenylase
gi|171854|gb|AAC04936.1| Ccr4p: Carbon catabolite repressor protein [Saccharomyces
cerevisiae]
gi|285810181|tpg|DAA06967.1| TPA: Ccr4p [Saccharomyces cerevisiae S288c]
Length = 837
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 38/153 (24%), Gaps = 33/153 (21%)
Query: 5 QGEWLKKWADQKIKTGI-----------PFVIAGDFNRKINSIGDT--DDFWQKMDPDGL 51
Q L + +K P +I GDFN INS + ++ +G
Sbjct: 679 QVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVYELINTGRVQIHQEGN 738
Query: 52 LIRF-------------------PQEKESTCNVIKRNKSSLDYFVI-DRDNKNFLIDNSF 91
F + N +DY + +
Sbjct: 739 GRDFGYMSEKNFSHNLALKSSYNCIGELPFTNFTPSFTDVIDYIWFSTHALRVRGLLGEV 798
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ S H PL ++F K N
Sbjct: 799 DPEYVSKFIGFPNDKFPSDHIPLLARFEFMKTN 831
>gi|323495342|ref|ZP_08100420.1| hypothetical protein VIBR0546_19819 [Vibrio brasiliensis LMG 20546]
gi|323310413|gb|EGA63599.1| hypothetical protein VIBR0546_19819 [Vibrio brasiliensis LMG 20546]
Length = 280
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 26/114 (22%), Gaps = 20/114 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
LK D+ + P ++AGDFN +
Sbjct: 187 RQLKVLVDELSQHQGPVIVAGDFNSWSEQR----------LKVMSESLSAVGLKEVNYTS 236
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +D F SD S H P+ + +
Sbjct: 237 DNRTQFITGLPLDHV---FYRGLKLEKAEAPISD-------ASDHNPILVTFHL 280
>gi|160876625|ref|YP_001555941.1| endonuclease/exonuclease/phosphatase [Shewanella baltica OS195]
gi|160862147|gb|ABX50681.1| Endonuclease/exonuclease/phosphatase [Shewanella baltica OS195]
gi|315268822|gb|ADT95675.1| Endonuclease/exonuclease/phosphatase [Shewanella baltica OS678]
Length = 398
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 19/168 (11%), Positives = 42/168 (25%), Gaps = 48/168 (28%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKIN---------------SIGDTDDFWQKMD 47
++ ++ ++ P ++ GDFN + S +
Sbjct: 231 AEAALLFNGILVRRQESKHPVIVMGDFNDSLTMGALDALTIQGESIHSNDIKAAGLGHLS 290
Query: 48 PDGLLIRF---------------------------PQEKESTCNVIKRNKSSLDYFVIDR 80
L F ++ + + S LDY ++
Sbjct: 291 DAALAAVFAQYQLKDAYELCLEANQQDSLTGNTAYHRDHRAATHYYGPKGSVLDYILLSS 350
Query: 81 DNKNFLIDNSFSIVSYDQSD------LDTRRSKLSTHCPLTIEYDFEK 122
+ + +V Y D R + + H P+ +E
Sbjct: 351 EFDASHGRSLAQVVDYQTCDRHLVRPEYERDAYSTDHAPVIVELALRS 398
>gi|3859723|emb|CAA21997.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Candida albicans]
Length = 589
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 30/128 (23%), Gaps = 24/128 (18%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL----IRFPQEKESTCNVIKRNKSSLD 74
V+ GDFN F ++ + K +
Sbjct: 457 KNSSIVVCGDFNSV-KDSAVYQLFSTGASKGHEDMNGRDYGKFTEDGFHHPFKLKSAYEA 515
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------------------SKLSTHCPLT 115
+ N ++ + Y L + + S H P+
Sbjct: 516 VGELPFTNLTPAFTDNIDYIWYSTPTLQVKGLLGRVDEEYTSHSIGFPDANFPSDHVPIL 575
Query: 116 IEYDFEKG 123
++ +KG
Sbjct: 576 AKFQLKKG 583
>gi|324324468|gb|ADY19728.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 263
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 6/118 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q L + D + + GDFN G+ ++ + ++ E
Sbjct: 151 FKDQVNRLMERVD----SNELSFLMGDFNNNARLQGEGYEYMMQEGLYDTYELAIEKDEG 206
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
T + + D + L + S + S T R+ +S H + ++ D
Sbjct: 207 TTV--QGEIAGWDENKHNLRIDLILCNRSEKVRSSKVIFNGTNRNVISDHFGVEVQVD 262
>gi|321451075|gb|EFX62850.1| hypothetical protein DAPPUDRAFT_336336 [Daphnia pulex]
Length = 310
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 7/108 (6%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN-KS 71
+ + P+++ GDFN + + + C + N +
Sbjct: 126 IEAMLDRSNPYLLGGDFN---GHHPLWESNATVNKAGKSVYEALINDQDACLITPPNLGT 182
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
LD + I + S S H P+ I +
Sbjct: 183 RLDPVSGKASTIDLTITAASIATSAKI---TLGSYMGSDHLPIIITLN 227
>gi|307546984|ref|YP_003899463.1| exodeoxyribonuclease III Xth [Halomonas elongata DSM 2581]
gi|307219008|emb|CBV44278.1| exodeoxyribonuclease III Xth [Halomonas elongata DSM 2581]
Length = 255
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 10/130 (7%), Positives = 32/130 (24%), Gaps = 21/130 (16%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-------------------WQKMDPDG 50
+++ + + ++I G ++ +I + +
Sbjct: 126 QEYLTKMARKRREYIICGTWHIAHKTIDLENWADNQTTPGFKPEERAWMDQVFGPTGFID 185
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ ++ ++ +F + S
Sbjct: 186 TFREINRDAGEYTWWPALDQDQPRERQEGWRIDYQIVGPNFRRH--VVDAWIDYDATFSE 243
Query: 111 HCPLTIEYDF 120
+ PL +EYD
Sbjct: 244 YAPLIVEYDL 253
>gi|147866881|emb|CAN78850.1| hypothetical protein VITISV_013214 [Vitis vinifera]
Length = 1074
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 17/107 (15%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD---------FWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
P+ + GDFN + + F + +D L+ Q ++ T
Sbjct: 92 DDPWCLGGDFNITLFQQERSSQRRISSAMRRFAETVDDLELVDLPLQGEKFT--WNGGLN 149
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ FL+ S+ +S H P+ +E
Sbjct: 150 NQAW-----ARLDKFLVSPSWLDQFSGVI-QSRLSRPISDHFPIVLE 190
>gi|189500051|ref|YP_001959521.1| Endonuclease/exonuclease/phosphatase [Chlorobium phaeobacteroides
BS1]
gi|189495492|gb|ACE04040.1| Endonuclease/exonuclease/phosphatase [Chlorobium phaeobacteroides
BS1]
Length = 341
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 26/125 (20%), Gaps = 24/125 (19%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI---------RFPQEKESTCNV 65
+KI T V+ GDFN + + D ++ +C
Sbjct: 209 RKISTDADIVVMGDFNDDPGDKSIQEILHATTERDAFSRKSIGKLFNFWTKSREKGSCYF 268
Query: 66 IKRNKSSLD---------------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
R ++ + Y S
Sbjct: 269 RSRWFQFDQVMVSSGLFDDRGLSVPEDAFSCFHIRHMEKGSNRRPYATYKGPKYLGGYSD 328
Query: 111 HCPLT 115
H PL
Sbjct: 329 HFPLL 333
>gi|321461027|gb|EFX72063.1| hypothetical protein DAPPUDRAFT_111147 [Daphnia pulex]
Length = 448
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 9/99 (9%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI--DRD 81
+I GDFN + +DDF + F + RN ++
Sbjct: 133 IIGGDFN---SHSEVSDDFHTTNSCGRKISEFLLTDPNWTLSTPRNLNTRPNSRDYSSST 189
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ S ++ + T S H P+ I+ D
Sbjct: 190 IDLTFTTSDLSPLT----SIHTGPYWSSDHLPVIIDIDL 224
>gi|320584151|gb|EFW98362.1| AP endonuclease [Pichia angusta DL-1]
Length = 602
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 6/57 (10%), Positives = 16/57 (28%), Gaps = 2/57 (3%)
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ S + L + + + S HCP+ ++++
Sbjct: 311 YTVWSTFKSNRPLNVGSRIDLILASSQLAPLVSQADIWPF--LHGSDHCPVHVDFEL 365
>gi|170037903|ref|XP_001846794.1| carbon catabolite repressor protein [Culex quinquefasciatus]
gi|167881236|gb|EDS44619.1| carbon catabolite repressor protein [Culex quinquefasciatus]
Length = 409
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 4/102 (3%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+ V+ GDFN +S ++ + ++ + ++R + Y
Sbjct: 298 NNVQLVLCGDFNSLPDSGVIEFLSAGRVS----MDHQDFKELGYKSCLQRIIDYIFYSKQ 353
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
L S + ++ S H PL +E +
Sbjct: 354 GMVPLGLLGPISGEWLRENKVVGCPHPHIPSDHFPLLVELEL 395
>gi|145219569|ref|YP_001130278.1| endonuclease/exonuclease/phosphatase [Prosthecochloris vibrioformis
DSM 265]
gi|145205733|gb|ABP36776.1| Endonuclease/exonuclease/phosphatase [Chlorobium phaeovibrioides
DSM 265]
Length = 341
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 33/137 (24%), Gaps = 27/137 (19%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
+ Q+ ++ GDFN + + + +L C
Sbjct: 202 ARAIVDSLLQR-NPQADIILMGDFNDEPGDRSLKETLGSSFSREQVLSEPDT-YLYNCWD 259
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVS-----------YDQSDLDTRRSK------- 107
+ S Y L+ + S + S + SK
Sbjct: 260 GHDGEGSYRYRGHWEQIDQMLVSSGMLQKSGLRLDSKPFSCFAISPMFPSNSKYPWRTYE 319
Query: 108 -------LSTHCPLTIE 117
S H PL ++
Sbjct: 320 KGKYSGGYSDHLPLLLK 336
>gi|118445216|ref|YP_891186.1| hypothetical protein BALH_p0037 [Bacillus thuringiensis str. Al
Hakam]
gi|118419777|gb|ABK88195.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
Length = 344
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 19/124 (15%), Positives = 35/124 (28%), Gaps = 8/124 (6%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKIN---SIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + T +P ++ GD N N + + + + I + +
Sbjct: 223 QVAQGNELLTGPANTNLPLILLGDLNSNANGTGTPTYGN--FINAGFQDVWIEVGEGQGF 280
Query: 62 TCNVIKR--NKSSLDYFVIDRDNKNFLIDNSFSI-VSYDQSDLDTRRSKLSTHCPLTIEY 118
TC N +S ID + + V +Q D + S H +
Sbjct: 281 TCCQDSDLLNAASSLNRRIDFILFKNGWNPIVADLVGEEQQDRTSTALWPSDHAGVVASL 340
Query: 119 DFEK 122
Sbjct: 341 ILPS 344
>gi|89054704|ref|YP_510155.1| endonuclease/exonuclease/phosphatase [Jannaschia sp. CCS1]
gi|88864253|gb|ABD55130.1| Endonuclease/exonuclease/phosphatase [Jannaschia sp. CCS1]
Length = 326
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 14/107 (13%), Positives = 30/107 (28%), Gaps = 16/107 (14%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ +P V GDFN ++ G + + + DY
Sbjct: 229 ASSDLPTVCMGDFNDVA-----WSWTTKRFKRYGGFLEPRVGRGMISSFH------ADYP 277
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + ++S+ + S H P+ F++
Sbjct: 278 FMRLPIDQLFLTEDVGLISFS-----RLEAFGSDHFPMKARVFFKES 319
>gi|67902132|ref|XP_681322.1| hypothetical protein AN8053.2 [Aspergillus nidulans FGSC A4]
gi|40740485|gb|EAA59675.1| hypothetical protein AN8053.2 [Aspergillus nidulans FGSC A4]
gi|259480808|tpe|CBF73788.1| TPA: inositol polyphosphate phosphatase, putative (AFU_orthologue;
AFUA_5G02140) [Aspergillus nidulans FGSC A4]
Length = 1180
Score = 36.0 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 35/125 (28%), Gaps = 5/125 (4%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDF-NRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
++ + L + +I + VI D N + + + D + ++
Sbjct: 1001 IMDHEICILNGDLNYRIDSVPRHVIIEDIRNNNLAKLLERDQLLASRRKNPGFRLRAFQE 1060
Query: 60 ESTCN-VIKRNKSSLDYFVIDRDNKNFLIDNSFSIV---SYDQSDLDTRRSKLSTHCPLT 115
+ D + ++ + Q + + S H P++
Sbjct: 1061 APITFAPTYKYDVGTDEYDSSDKKRSPAWCDRVLYRGLGRIKQLEYRRHEVRASDHRPVS 1120
Query: 116 IEYDF 120
+ F
Sbjct: 1121 ATFKF 1125
>gi|229818336|ref|ZP_04448617.1| hypothetical protein BIFANG_03638 [Bifidobacterium angulatum DSM
20098]
gi|229784206|gb|EEP20320.1| hypothetical protein BIFANG_03638 [Bifidobacterium angulatum DSM
20098]
Length = 391
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 8/99 (8%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
Q + +V+ GDFN + + G + + S+
Sbjct: 290 IGQLQGSKGKYVLMGDFNAIWDHASFRYLLGARFLDSG--------ERAGSGFHMTYPSN 341
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ + ID+ DL+ R S H
Sbjct: 342 VKLLGVIPMPACSEIDHIVHDRGVIVGDLEARAVAGSDH 380
>gi|190406669|gb|EDV09936.1| glucose-repressible alcohol dehydrogenase transcriptional effector
[Saccharomyces cerevisiae RM11-1a]
Length = 840
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 38/153 (24%), Gaps = 33/153 (21%)
Query: 5 QGEWLKKWADQKIKTGI-----------PFVIAGDFNRKINSIGDT--DDFWQKMDPDGL 51
Q L + +K P +I GDFN INS + ++ +G
Sbjct: 682 QVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVYELINTGRVQIHQEGN 741
Query: 52 LIRF-------------------PQEKESTCNVIKRNKSSLDYFVI-DRDNKNFLIDNSF 91
F + N +DY + +
Sbjct: 742 GRDFGYMSEKNFSHNLALKSSYNCIGELPFTNFTPSFTDVIDYIWFSTHALRVRGLLGEV 801
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ S H PL ++F K N
Sbjct: 802 DPEYVSKFIGFPNDKFPSDHIPLLARFEFMKTN 834
>gi|66819994|ref|XP_643652.1| hypothetical protein DDB_G0275947 [Dictyostelium discoideum AX4]
gi|60471768|gb|EAL69724.1| hypothetical protein DDB_G0275947 [Dictyostelium discoideum AX4]
Length = 725
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 22/96 (22%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+I+GDFN N DD Q Q + +
Sbjct: 214 IISGDFNCIHNDNSLLDDIIQSY--TYQHHLIDQGEFKNTPTHTHGNRLDRIYTQYNRID 271
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + LS H P++
Sbjct: 272 PENIYTQVHQIPSS----------LSDHNPISTTIS 297
>gi|328874296|gb|EGG22662.1| hypothetical protein DFA_04792 [Dictyostelium fasciculatum]
Length = 552
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 39/143 (27%), Gaps = 28/143 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + W Q P ++ GDFN + NS + D F ++
Sbjct: 412 QRNAYEIHNWTKQY--DDAPNILVGDFNAEPNSHPIQFLTGKHSIKDNTGD-FKDMYDTY 468
Query: 63 CNVIKRN-----KSSLDYFV-----IDRDNKNFLIDNSFSIVSYDQ-------------- 98
C N K + Y I++ ++ S + +Q
Sbjct: 469 CQSNPDNSICTTKGGITYRDVGDVSIEKRIDFIMVKQSSKSTTTNQIELTNLESVGGQRF 528
Query: 99 -SDLDTRRSKLSTHCPLTIEYDF 120
+ S H L + F
Sbjct: 529 DDNGIPLSIFPSDHSGLVSTFKF 551
>gi|325189192|emb|CCA23715.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 283
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 11/96 (11%), Positives = 23/96 (23%), Gaps = 5/96 (5%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
F++ GD N + + + V SS D
Sbjct: 182 FILTGDLNANLQDDAIHYLKGIPLISTLQQCGYQGGTFIGPGVFTGPLSSA-----VFDY 236
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + I+ D ++ H + +
Sbjct: 237 IFIQPNENIRIIGSSIIDSRRNGQAITDHAIVKTTF 272
>gi|325186273|emb|CCA20779.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 279
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 11/96 (11%), Positives = 23/96 (23%), Gaps = 5/96 (5%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
F++ GD N + + + V SS D
Sbjct: 178 FILTGDLNANLQDDAIHYLKGIPLISTLQQCGYQGGTFIGPGVFTGPLSSA-----VFDY 232
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + I+ D ++ H + +
Sbjct: 233 IFIQPNENIRIIGSSIIDSRRNGQAITDHAIVKTTF 268
>gi|299471767|emb|CBN76988.1| ARP; DNA-(apurinic or apyrimidinic site) lyase [Ectocarpus
siliculosus]
Length = 479
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 8/87 (9%), Positives = 13/87 (14%), Gaps = 5/87 (5%)
Query: 37 GDTDDFWQKMDPDGLLIRFPQE-KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS 95
D + R + L
Sbjct: 389 DDNKAEGSGCSLVDTFREKHPKVTGVFSYWSVR--ARNRPVNRGMRLDYCLASRGLVGGD 446
Query: 96 YDQSDL--DTRRSKLSTHCPLTIEYDF 120
D +S HCP+ +
Sbjct: 447 GVHDAFVLDRDTVGVSDHCPVGVVLRL 473
>gi|270016340|gb|EFA12786.1| hypothetical protein TcasGA2_TC010622 [Tribolium castaneum]
Length = 1057
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 36/119 (30%), Gaps = 18/119 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-----WQKMDPDGLLIRFPQEK 59
Q + L++ P + AGDFN K + G L I
Sbjct: 294 QIQILEEDLLTLFDGNTPTITAGDFNAKHINWGSHRSKRNGNILNDFTDQHLDISVMAPA 353
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
E T + + I ++ + + + + +S S H P+ ++
Sbjct: 354 EPTFYQNSDGAADILDVAIVKNVVHQVRLTAINDLS-------------SDHNPVLMQI 399
>gi|301121032|ref|XP_002908243.1| carbon catabolite repressor protein, putative [Phytophthora
infestans T30-4]
gi|262103274|gb|EEY61326.1| carbon catabolite repressor protein, putative [Phytophthora
infestans T30-4]
Length = 1180
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 17/151 (11%), Positives = 37/151 (24%), Gaps = 32/151 (21%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL-------- 52
ML++Q E + + +P ++ GDFN + +S + D
Sbjct: 455 MLAKQLERVT------LSRNLPTILCGDFNSEPSSAVYEFMTRNHVLLDHPDIQCPPQQL 508
Query: 53 ------IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNS------------FSIV 94
+ + +Y ++
Sbjct: 509 ANIYASLDLEHNIGFASAYASVFGAEPEYTNYTGVVDYVWYTPETLTPFAGLKVHPPEVL 568
Query: 95 SYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
LS H PL +++ + +
Sbjct: 569 EAYSKTALPNCQFLSDHIPLCLDFSIKAAAI 599
>gi|262197346|ref|YP_003268555.1| endonuclease/exonuclease/phosphatase [Haliangium ochraceum DSM
14365]
gi|262080693|gb|ACY16662.1| Endonuclease/exonuclease/phosphatase [Haliangium ochraceum DSM
14365]
Length = 335
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 24/118 (20%), Gaps = 20/118 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q +W + + P V+ GD N S + + +
Sbjct: 237 QLAAAAEWVAGQTR---PSVVVGDMNATYWSHPLRGLLARGLRSSQRGFGLQPTWPRSLW 293
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ L + T S H PL +
Sbjct: 294 P------------LRIPIDQLLHSRELRTMGRS-----TGPFLGSDHRPLHVTLALPS 334
>gi|222111827|ref|YP_002554091.1| endonuclease/exonuclease/phosphatase [Acidovorax ebreus TPSY]
gi|221731271|gb|ACM34091.1| Endonuclease/exonuclease/phosphatase [Acidovorax ebreus TPSY]
Length = 291
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 27/115 (23%), Gaps = 12/115 (10%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR---NKS 71
Q V+ GDFN + + D Q + R +
Sbjct: 179 QPKAHTPHAVLCGDFNLQAHEPEY--AMLAAALADEEGATAGQAGQPPLWDAWRLLHPGA 236
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS-------KLSTHCPLTIEYD 119
D + + S R+ + S H P+ +E
Sbjct: 237 PQPPTFCVFDQTYAPQPLACDFIWVSDSLRSRVRAVRVDGVTQASDHQPVLLELQ 291
>gi|87120572|ref|ZP_01076466.1| Uncharacterized conserved secreted protein [Marinomonas sp. MED121]
gi|86164215|gb|EAQ65486.1| Uncharacterized conserved secreted protein [Marinomonas sp. MED121]
Length = 368
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 9/114 (7%), Positives = 24/114 (21%), Gaps = 12/114 (10%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ FV+ GD N + + + + K +
Sbjct: 252 LAKNAEFVVLGDLNASLKEGDAFSQSLRHLMQGLNIKHQDLPTSLGGFAHSPKKPWAKWH 311
Query: 77 VIDRDNKNFLI-DNSFSIVSYDQSDLDTRRSK-----------LSTHCPLTIEY 118
+ ++ + + K S H + ++
Sbjct: 312 TASWRLCADYVLYPNWPHSRFSIHNQAVFWPKKSHPMSASVLHASDHRMIYLDL 365
>gi|257900026|ref|ZP_05679679.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium Com15]
gi|257837938|gb|EEV63012.1| endonuclease/exonuclease/phosphatase [Enterococcus faecium Com15]
Length = 273
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 2/102 (1%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+T P GDFN +S G + + + ++ V K+
Sbjct: 172 ETRAPLFFLGDFNNPADSEGYHIVKESGLLLQDSYVIANDKGKAAT-VEKKIDGWEQNT- 229
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + Y + +S H IE D
Sbjct: 230 EKLRIDFIFVPEGVQVKKYQRIFDGIDSPIISDHYGAEIEID 271
>gi|147844159|emb|CAN80562.1| hypothetical protein VITISV_040289 [Vitis vinifera]
Length = 585
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 19/108 (17%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD---------FWQKMDPDGLLIRFPQEKESTCNVIK-RN 69
P+ + GDFN ++ + F Q +D GL+ QE N
Sbjct: 364 EEPWCLGGDFNIILSQRERSRQGRITSAMRRFAQIIDDLGLVDLPLQE-GLFTWSGGLNN 422
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+S ++ Q S H P+ +E
Sbjct: 423 QSWARLDRFLMTLSWLDQFSNVIQGRLPQPT--------SDHFPILLE 462
>gi|12620109|gb|AAG60566.1|AF250771_2 ElsH [uncultured bacterium pCosHE1]
Length = 106
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 15/112 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L +W + + G P VIAGDFN + + L +E R
Sbjct: 10 LAEWTNA-LPEGEPVVIAGDFNDW------------RQRANHPLKVEAGLEEIFTRAHGR 56
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + N+ S + LS H PL+ E
Sbjct: 57 PARTFPVRFPLLRLDRIYVKNA--HASSPTALALLNWRHLSDHAPLSAEIHL 106
>gi|147810447|emb|CAN65334.1| hypothetical protein VITISV_023847 [Vitis vinifera]
Length = 554
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 27/119 (22%), Gaps = 18/119 (15%)
Query: 15 QKIKTGIPFVIAGDFNR----------KINSIGDTDDFW--------QKMDPDGLLIRFP 56
Q I + GD N + + + F + + +
Sbjct: 392 QTILEHDRIIWLGDLNYRIALSYRSAKALVEMRNWRAFAYSKSLRRGRVFEGWNEGKIYF 451
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
N R + R + + +Q S+ S H P+
Sbjct: 452 PPTYKYSNNSDRYAGDDMHPKEKRRTPAWCDRILWYGRGLNQLSYVRGESRFSDHRPVY 510
>gi|302757793|ref|XP_002962320.1| hypothetical protein SELMODRAFT_140972 [Selaginella moellendorffii]
gi|300170979|gb|EFJ37580.1| hypothetical protein SELMODRAFT_140972 [Selaginella moellendorffii]
Length = 472
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 11/116 (9%), Positives = 25/116 (21%), Gaps = 18/116 (15%)
Query: 19 TGIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLIRFPQEKESTCNV------- 65
+ GD N +++ + W + L
Sbjct: 303 AHDRVLWLGDLNYRLSLSNGETKTLLDSENWSALLQKDQLKLAQSVGGVFHGWQEGAIEF 362
Query: 66 --IKRNKSSLD---YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ K++ + + + Q + S H P+T
Sbjct: 363 APTYKYKANSTEYSNGGEKQRTPAWCDRVLWKGKGLRQINYYRTEYTFSDHRPVTA 418
>gi|256845169|ref|ZP_05550627.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
gi|256718728|gb|EEU32283.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
Length = 279
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ K K IAGDFN ++ D + ++T R
Sbjct: 170 DYFQDKDKKENDIFIAGDFNLYALDESFR-PLYKH--ADKITYAIDPAIKTTIGTKGRAN 226
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S D F + +S + + + R +S H P+ I
Sbjct: 227 SY-DNFFFSQKYTQEFTGSS-GALDFSGDNPKLMREIISDHIPVFI 270
>gi|260807987|ref|XP_002598789.1| hypothetical protein BRAFLDRAFT_120737 [Branchiostoma floridae]
gi|229284064|gb|EEN54801.1| hypothetical protein BRAFLDRAFT_120737 [Branchiostoma floridae]
Length = 531
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 19/124 (15%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGD-----------------TDDFWQKMDPDGLLIRFPQ 57
+ G + GD N +++ I D ++M+ + F +
Sbjct: 11 PEDARGSVVLWVGDLNYRLSDIEISEVKSLIEKEMFWALMEHDQLKRQMNERSVFKDFKE 70
Query: 58 EKEST-CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLT 115
+ + + + S R KLS H P++
Sbjct: 71 ASVNFIPTYKYDPGTDDWDTSEKCRVPAWCDRVLWKGDSVSAVEYRSHRELKLSDHKPVS 130
Query: 116 IEYD 119
+D
Sbjct: 131 CLFD 134
>gi|196034583|ref|ZP_03101991.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus W]
gi|228944177|ref|ZP_04106556.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|195992626|gb|EDX56586.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus W]
gi|228815566|gb|EEM61808.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 263
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 10/120 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q L + D + + GDFN ++ G + + L +
Sbjct: 151 FKDQVNRLMERVD----SNELSFLMGDFNNNARLQGEGYEYMMQKGLYDTYELAI----E 202
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++ + D + L + S I S T R +S H + ++ D
Sbjct: 203 KDEGTTVQGEIAGWDENKHNLRIDLILCNRSEKIRSSKVVFNGTNRKVISDHFGVEVQVD 262
>gi|297196884|ref|ZP_06914281.1| endonuclease/exonuclease/phosphatase [Streptomyces sviceus ATCC
29083]
gi|197711512|gb|EDY55546.1| endonuclease/exonuclease/phosphatase [Streptomyces sviceus ATCC
29083]
Length = 335
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL 52
L +WL WA+Q+ V GDFN D ++ GL
Sbjct: 247 LKAIAKWLAGWAEQEFGWDHNLVALGDFNI----DRVGDPLFEAFTSTGLT 293
>gi|28269421|gb|AAO37964.1| putative inositol polyphosphate 5-phosphatase [Oryza sativa
Japonica Group]
Length = 539
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 24/123 (19%), Gaps = 22/123 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKINSI--------GDTDDFW--------------QKMDPDGLL 52
+ I + GD N +I+ + +
Sbjct: 375 ETILEHDRIIWLGDLNYRISLSYCSAKALVEMHNWKQLLEKDQLRIERRCGRVFQGWKEG 434
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ R + R + + Q S+ S H
Sbjct: 435 RIYFPPTYKYSFNSDRYSGECVHSKEKRRTPAWCDRILWHGNGLIQLSYVRGESRFSDHR 494
Query: 113 PLT 115
P+
Sbjct: 495 PVY 497
>gi|86141528|ref|ZP_01060074.1| probable secreted protein [Leeuwenhoekiella blandensis MED217]
gi|85832087|gb|EAQ50542.1| probable secreted protein [Leeuwenhoekiella blandensis MED217]
Length = 269
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 31/113 (27%), Gaps = 19/113 (16%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+ + + P ++AGDFN NS +D
Sbjct: 176 QIAELLNITTNLNQPVLVAGDFNAVANS-----PVIASLDSVFTRTCSSCPPTIP----- 225
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++ D F + F + ++ D S H P+ + +
Sbjct: 226 -----VENPSKAIDFIAFKPKSFFRLNNHRVIDE----HYASDHLPVFANFQW 269
>gi|189499777|ref|YP_001959247.1| Endonuclease/exonuclease/phosphatase [Chlorobium phaeobacteroides
BS1]
gi|189495218|gb|ACE03766.1| Endonuclease/exonuclease/phosphatase [Chlorobium phaeobacteroides
BS1]
Length = 471
Score = 36.0 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 20/153 (13%), Positives = 41/153 (26%), Gaps = 34/153 (22%)
Query: 3 SQQGEWLKKWADQKIKTGIP------FVIAGDFNRKINSIGDTDDFWQ-------KMDPD 49
+++ L ++ ++ K F + GDFN + +++
Sbjct: 308 NREIRKLTEFLAERAKKENDSDADNFFFLLGDFNILGKDHTTWESLHTNNFMVPGQLEEI 367
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD------- 102
++K + D D N I + F V D
Sbjct: 368 PEGSNVKRDKAYDQIAFWKRSRRRDGQHTAIDTGNAGIFDFFRYVFRYGDDDPEQEDERY 427
Query: 103 --------------TRRSKLSTHCPLTIEYDFE 121
R ++S H P+ +E +
Sbjct: 428 YADKVGKTRLSYPTWRTYQMSDHLPMWLELRID 460
>gi|228913117|ref|ZP_04076756.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228846522|gb|EEM91535.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 263
Score = 36.0 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 2/109 (1%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+++ + + GDFN G+ ++ + ++ E T +
Sbjct: 156 NRLMERVDSNELSFLMGDFNNNARLQGEGYEYMMQEGLYDTYELAIEKDEGTTV--QGEI 213
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S I S T R +S H + ++ D
Sbjct: 214 AGWDENKHNLRIDLILCNRSEKIRSSKVVFNGTNRKVISDHFGVEVQVD 262
>gi|85101628|ref|XP_961181.1| hypothetical protein NCU03792 [Neurospora crassa OR74A]
gi|16944690|emb|CAD11414.1| conserved hypothetical protein [Neurospora crassa]
gi|28922722|gb|EAA31945.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 1171
Score = 36.0 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 20/83 (24%), Gaps = 7/83 (8%)
Query: 39 TDDFWQKMDPDGLLIRFPQEKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ D L I F + +
Sbjct: 1062 RNPGFRLRAFDELPITFAPTYKYDVGTDNYDTSEKKRSPAWCDRLLYRGRG------RIE 1115
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
Q D ++S H P++ + F
Sbjct: 1116 QLDYRRHEVRVSDHRPVSGRFRF 1138
>gi|289616202|emb|CBI56998.1| unnamed protein product [Sordaria macrospora]
Length = 137
Score = 35.6 bits (80), Expect = 2.1, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 35/128 (27%), Gaps = 15/128 (11%)
Query: 3 SQQGEWLK---KWADQ--KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ 57
++ + +K +W DQ P ++ GD N + G + + G
Sbjct: 14 NESAKLIKIADEWKDQGFNSTKPAPVLLGGDLNIEPTKEGY-----KTLTAPGGFKDIKN 68
Query: 58 EKESTCNV--IKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQSDLDTRRS-KLSTHC 112
+ D+ + + ++Y +S H
Sbjct: 69 LVPKAHWYGNTMTSTGFTSSTSDDKRIDYLFVRDPLDIQFLTYGVITNKFEDEVYISDHM 128
Query: 113 PLTIEYDF 120
PL ++
Sbjct: 129 PLVVDAKL 136
>gi|255713110|ref|XP_002552837.1| KLTH0D02574p [Lachancea thermotolerans]
gi|238934217|emb|CAR22399.1| KLTH0D02574p [Lachancea thermotolerans]
Length = 368
Score = 35.6 bits (80), Expect = 2.1, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 27/116 (23%), Gaps = 18/116 (15%)
Query: 23 FVIAGDFNRKINSIGDT----------DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS- 71
+ AGD N +S D L Q+ +
Sbjct: 251 ILFAGDLNSAPDSPVIKFLKGESVHRADLSLINPLRPYLNRYIYQDTSADLFEHTCYSGK 310
Query: 72 ------SLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYDF 120
+ Y D K L S + Q + S H P+ E +
Sbjct: 311 LKGIFDYIWYHDKDFRLKRILSGAEVSQELRELQEFGLPNKDHPSDHIPVLAELEL 366
>gi|229194746|ref|ZP_04321537.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus m1293]
gi|228588757|gb|EEK46784.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus m1293]
Length = 263
Score = 35.6 bits (80), Expect = 2.1, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+ + + + GDFN ++ G + + L ++ ++
Sbjct: 156 NRLMEHVDSNELSFLMGDFNNNARLQGEGYEYMMQKGLHDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S + S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKHNLRIDLILCNRSEKVRSSKVIFNGTNRNIISDHFGVEVQVD 262
>gi|167533155|ref|XP_001748258.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773378|gb|EDQ87019.1| predicted protein [Monosiga brevicollis MX1]
Length = 372
Score = 35.6 bits (80), Expect = 2.1, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 35/125 (28%), Gaps = 11/125 (8%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIR------FPQEKE 60
E ++ ++ + P + AGDFN S + + +
Sbjct: 246 EVMRIHSEPAPRKARPQLFAGDFNALTKSDYSETRWAEIAHIRARTNWEAPVSSLCETIA 305
Query: 61 STCNVIKRNKSSLDYF-----VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
V + + + + ++ + + R + S H P+
Sbjct: 306 DAGWVDVYARCNRRSDSVLTCRFNTRIDYIYTNRAWEDHLRCTNCIIDRGNVSSDHKPVI 365
Query: 116 IEYDF 120
++ +
Sbjct: 366 ADFAW 370
>gi|186474192|ref|YP_001861534.1| endonuclease/exonuclease/phosphatase [Burkholderia phymatum STM815]
gi|184196524|gb|ACC74488.1| Endonuclease/exonuclease/phosphatase [Burkholderia phymatum STM815]
Length = 250
Score = 35.6 bits (80), Expect = 2.1, Method: Composition-based stats.
Identities = 10/111 (9%), Positives = 22/111 (19%), Gaps = 19/111 (17%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
++ +P ++ GD N + + P +
Sbjct: 154 QIRALIAAFDTARMPVLLMGDINEWF----VWGPALRML--VTHFRAAPAPRTFPS---- 203
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + ++ R S H PL
Sbjct: 204 --------RLPVFALDRIWMHPVDRLLDVHVHSSMLARV-ASDHLPLVARI 245
>gi|50083722|ref|YP_045232.1| hypothetical protein ACIAD0480 [Acinetobacter sp. ADP1]
gi|49529698|emb|CAG67410.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter sp. ADP1]
Length = 373
Score = 35.6 bits (80), Expect = 2.1, Method: Composition-based stats.
Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 16/109 (14%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ ++ GD N S +Q++ +
Sbjct: 232 DQIKDMNDSCIVMGDLNDVAWSRTTR--LFQRISGLLDPRVGRHFVNTFH---------A 280
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
DY ++ + F++V D+ R S H P+ + +K
Sbjct: 281 DYPLLRWSLDHIFHSTDFALV-----DMHRLRHIGSDHFPVYVVLQTDK 324
>gi|7488319|pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 35.6 bits (80), Expect = 2.1, Method: Composition-based stats.
Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 7/107 (6%)
Query: 17 IKTGIPFVIAGDFNRKINSI-----GDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+K + + GDFN ++ + LL E ST N
Sbjct: 124 LKRAEAWCLIGDFNDIRSNDEKLGGPRRSPSSFQCFEHMLLNCSMHELGSTGNSF--TWG 181
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + N + + S H P+ +++
Sbjct: 182 GNRNDQWVQCKLDRCFGNPAWFSIFPNAHQWFLEKFGSDHRPVLVKF 228
>gi|39422|emb|CAA45501.1| hybrid cereolysin AB [Bacillus cereus]
Length = 592
Score = 35.6 bits (80), Expect = 2.1, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 31/137 (22%), Gaps = 21/137 (15%)
Query: 5 QGEWLKKWAD-QKIKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPD---GLLIRF 55
Q + ++ + + I + GD N NS + ++ +
Sbjct: 457 QLKEIQDFIKNKNIPNDEYVLFGGDMNVNKINAENNSDSEYASMFKTLHASIPSYTGHTA 516
Query: 56 PQEKESTCNVIKRNK-----------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ + +S D+ L S T
Sbjct: 517 TWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSFIENKVLQPKSPQWTVTSWLKKYTY 576
Query: 105 RSKLSTHCPLTIEYDFE 121
S H P+ +
Sbjct: 577 DDY-SDHYPVAATISMK 592
>gi|147836977|emb|CAN74759.1| hypothetical protein VITISV_011400 [Vitis vinifera]
Length = 1540
Score = 35.6 bits (80), Expect = 2.1, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 17/106 (16%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD---------FWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
P+ + GDFN ++ + F Q +D L+ Q + RN
Sbjct: 714 EEPWCLGGDFNVILSQRERSRQGRLSGAMRSFAQTVDDLELIDLPMQGGIA-TWSGGRNN 772
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S FL+ + + + S H P+ +
Sbjct: 773 QS------WARLDRFLVTQQWLDMFSGVA-QCRMHRPTSDHFPILL 811
>gi|332828520|gb|EGK01220.1| hypothetical protein HMPREF9455_02412 [Dysgonomonas gadei ATCC
BAA-286]
Length = 258
Score = 35.6 bits (80), Expect = 2.1, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 25/117 (21%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L + P ++AGDFN K ++ + CN
Sbjct: 167 ARQLDSYIG----NSFPTILAGDFNAKPGENAI--------------VQGMSNWQRICNN 208
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ D +++ SY+ + + +S HC L + ++ K
Sbjct: 209 FPTFPAIPTSK---IDYIFAKPTGKWTVKSYEI----LKETGISDHCALVTDVEYNK 258
>gi|157863708|gb|ABV90875.1| inositol-1,4,5-triphosphate-5-phosphatase [Solanum lycopersicum]
Length = 630
Score = 35.6 bits (80), Expect = 2.1, Method: Composition-based stats.
Identities = 11/109 (10%), Positives = 23/109 (21%), Gaps = 2/109 (1%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK--MDPDGLLIRFPQEKESTCNVI 66
L V ++ +NS + +
Sbjct: 485 LNYRISMAEAEVRKLVANKKWDELLNSDQLHKELQNGHVFAGWKEGLVNFAPTYKYEFNS 544
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
R + + + + + Q KLS H P++
Sbjct: 545 DRYNGEITREGEKKRSPAWCDRILWLGKGIKQMFYKRAELKLSDHRPVS 593
>gi|34762326|ref|ZP_00143329.1| DNASE I HOMOLOGOUS PROTEIN DHP2 PRECURSOR [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|237741833|ref|ZP_04572314.1| dnase I homologous protein dhp2 precursor [Fusobacterium sp.
4_1_13]
gi|27887980|gb|EAA25044.1| DNASE I HOMOLOGOUS PROTEIN DHP2 PRECURSOR [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|229429481|gb|EEO39693.1| dnase I homologous protein dhp2 precursor [Fusobacterium sp.
4_1_13]
Length = 279
Score = 35.6 bits (80), Expect = 2.1, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ K K IAGDFN ++ D + ++T R
Sbjct: 170 DYFQDKDKKENDIFIAGDFNLYALDESFR-PLYKH--ADKITYAIDPAIKTTIGTKGRAN 226
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S D F + +S + + + R +S H P+ I
Sbjct: 227 SY-DNFFFSQKYTQEFTGSS-GALDFSGDNPKLMREIISDHIPVFI 270
>gi|304393615|ref|ZP_07375543.1| putative endonuclease/exonuclease/phosphatase [Ahrensia sp. R2A130]
gi|303294622|gb|EFL88994.1| putative endonuclease/exonuclease/phosphatase [Ahrensia sp. R2A130]
Length = 327
Score = 35.6 bits (80), Expect = 2.1, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 19/119 (15%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L+ P ++AGDFN S + +L
Sbjct: 218 RQMARLRGRFSTL---PEPKILAGDFNSTPWSDAVQRVA--QWSRTAVLSGLIHS----- 267
Query: 64 NVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL--TIEYD 119
R + ++ + VS S S H + + +D
Sbjct: 268 -WGPRLAGRSNGNPWPMLPIDQTMVSDGVGPVSRQ-----RLESGGSDHFAIRTVVVFD 320
>gi|251791676|ref|YP_003006397.1| Endonuclease/exonuclease/phosphatase [Dickeya zeae Ech1591]
gi|247540297|gb|ACT08918.1| Endonuclease/exonuclease/phosphatase [Dickeya zeae Ech1591]
Length = 287
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 12/101 (11%), Positives = 24/101 (23%), Gaps = 10/101 (9%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN--KSSLDYFVIDR 80
++ GD N +S + V S + +
Sbjct: 193 MILMGDLNCLPDSEEYSRLV--GPVSPHHGRLVRHRGLMDAWVAAGQPENSGSTHPAVGG 250
Query: 81 DNKNFLIDN--SFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ L+ ++ + S H PL +E
Sbjct: 251 RIDHCLLTPLLGLTVRRCWVDIENQG----SDHHPLWVELQ 287
>gi|254516326|ref|ZP_05128385.1| endonuclease/exonuclease/phosphatase family protein [gamma
proteobacterium NOR5-3]
gi|219674749|gb|EED31116.1| endonuclease/exonuclease/phosphatase family protein [gamma
proteobacterium NOR5-3]
Length = 312
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 28/114 (24%), Gaps = 17/114 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ + Q + P V+ GD N + +D L P++
Sbjct: 187 RQVSEMVAQLVDIDGPLVLMGDLNSHWSQKSSH--VRSLVDELDLQAFSPEKNGLGTY-- 242
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ LI + +Y+ H + E +
Sbjct: 243 --------KKTTGKRLDWILISQELAFEAYEVLPDIVA-----DHLAVVAEISY 283
>gi|319788340|ref|YP_004147815.1| endonuclease/exonuclease/phosphatase [Pseudoxanthomonas suwonensis
11-1]
gi|317466852|gb|ADV28584.1| Endonuclease/exonuclease/phosphatase [Pseudoxanthomonas suwonensis
11-1]
Length = 276
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 12/114 (10%), Positives = 33/114 (28%), Gaps = 21/114 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ + ++ V+ GDFN + P E + +
Sbjct: 182 FIAELLQDHPNAVLMGDFNCLPDVPE-------MELLYRTTSLRPPECVVPTFPSWKPQR 234
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
++D+ ++ D + + S H L ++ + + ++
Sbjct: 235 AIDHILVSGDLRCAGAKALPAAF--------------SDHLALAMDIEVPERSL 274
>gi|319640027|ref|ZP_07994754.1| hypothetical protein HMPREF9011_00351 [Bacteroides sp. 3_1_40A]
gi|317388305|gb|EFV69157.1| hypothetical protein HMPREF9011_00351 [Bacteroides sp. 3_1_40A]
Length = 276
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 33/113 (29%), Gaps = 20/113 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E +K +A K PF +AGD N + S + K I +
Sbjct: 182 ELIKDFAAAHKK---PFFLAGDLNAEPES------AFIKYLQQDFQILSDVNQ------- 225
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ID F++ S + S H PL + +
Sbjct: 226 HTFPAPAPTETIDYITALKQNMKGFTVTSAQVVNEPV----ASDHRPLVVVLE 274
>gi|254881020|ref|ZP_05253730.1| metallophosphoesterase [Bacteroides sp. 4_3_47FAA]
gi|254833813|gb|EET14122.1| metallophosphoesterase [Bacteroides sp. 4_3_47FAA]
Length = 324
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 33/113 (29%), Gaps = 20/113 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E +K +A K PF +AGD N + S + K I +
Sbjct: 230 ELIKDFAAAHKK---PFFLAGDLNAEPES------AFIKYLQQDFQILSDVNQ------- 273
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ID F++ S + S H PL + +
Sbjct: 274 HTFPAPAPTETIDYITALKQNMKGFTVTSAQVVNEPV----ASDHRPLVVVLE 322
>gi|150003751|ref|YP_001298495.1| hypothetical protein BVU_1182 [Bacteroides vulgatus ATCC 8482]
gi|149932175|gb|ABR38873.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
Length = 247
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 21/113 (18%), Positives = 33/113 (29%), Gaps = 20/113 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E +K +A K PF +AGD N + S + K I +
Sbjct: 153 ELIKDFAAAHKK---PFFLAGDLNAEPES------AFIKYLQQDFQILSDVNQ------- 196
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ID F++ S + S H PL + +
Sbjct: 197 HTFPAPAPTETIDYITALKQNMKGFTVTSAQVVNEPV----ASDHRPLVVVLE 245
>gi|312068220|ref|XP_003137112.1| endonuclease/Exonuclease/phosphatase [Loa loa]
gi|307767734|gb|EFO26968.1| endonuclease/Exonuclease/phosphatase [Loa loa]
Length = 412
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 12/114 (10%), Positives = 29/114 (25%), Gaps = 2/114 (1%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ--EKESTCNVIKR 68
W ++ + ++ + N + F Q F + E++ R
Sbjct: 183 NWRVDQLTSQEMIMMLAELNSNNYMDKLVNKFDQLKKAQKSGRAFMEYNEEKIRFAPTYR 242
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
++ +R + LS H P+ + +
Sbjct: 243 LMVGSSHYDQERVPSWCDRILFKGKSLRCERYESNHMVTLSDHFPVYAHFILSE 296
>gi|301052087|ref|YP_003790298.1| putative endonuclease/exonuclease/phosphatase family protein
[Bacillus anthracis CI]
gi|300374256|gb|ADK03160.1| possible endonuclease/exonuclease/phosphatase family protein
[Bacillus cereus biovar anthracis str. CI]
Length = 263
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 6/118 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q L + D + + GDFN G+ ++ + ++ E
Sbjct: 151 FKDQVNRLVERVD----SNELSFLMGDFNNNARLQGEGYEYMMQEGLYDTYELAIEKDEG 206
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
T + + D + L + S I S T R +S H + ++ D
Sbjct: 207 TTV--QGEIAGWDENKHNLRIDLILCNRSEKIRSSKVVFNGTNRKVISDHFGVEVQVD 262
>gi|297822951|ref|XP_002879358.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297325197|gb|EFH55617.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 594
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 27/123 (21%), Gaps = 22/123 (17%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIR-------------- 54
+ I + GD N ++ W+ + + L
Sbjct: 429 ENILQHDRVIWLGDLNYRIALSYRSAKALVEMQNWRALLENDQLRIEQKRGHVFKGWNEG 488
Query: 55 --FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ N R + R + + Q S+ S H
Sbjct: 489 KIYFPPTYKYSNNSDRYAGGDLHPKEKRRTPAWCDRILWHGEGLHQLSYVRGESRFSDHR 548
Query: 113 PLT 115
P+
Sbjct: 549 PVY 551
>gi|149369902|ref|ZP_01889753.1| hypothetical protein SCB49_02474 [unidentified eubacterium SCB49]
gi|149356393|gb|EDM44949.1| hypothetical protein SCB49_02474 [unidentified eubacterium SCB49]
Length = 308
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 13/107 (12%), Positives = 30/107 (28%), Gaps = 17/107 (15%)
Query: 21 IPFVIAGDFN---RKINSIGDTDDFWQKMDPDGLLIRFPQEKEST---CNVIKRNKSSLD 74
++ GDFN D+ ++ + + K+ ++
Sbjct: 213 DNILLCGDFNLNEAHPVWNSFYDNGYKNAISNTPTTLKMKCKDGNYLNHSIDNMYWQGDF 272
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ T+ +LS H P++I ++ E
Sbjct: 273 TITSAGSLDFIQKCENL-----------TKARQLSDHLPVSINFNLE 308
>gi|109390646|emb|CAJ13354.1| pol protein [Drosophila simulans]
Length = 1040
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 8/112 (7%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+A++ + F++ GD+N K W + + ++
Sbjct: 98 NFAEKTLGGQSKFILCGDWNAKHRQ-------WGCIRACQRGAALFEAVKADSLAEIIAT 150
Query: 71 SSLDYFVIDRDNKNFLIDNSFSI-VSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+F D ID S + + + +R S H P+ +E + +
Sbjct: 151 GCATHFPHDTRKNPSAIDFSICKGLGRFEKRISSRADLSSDHLPILLEINLD 202
>gi|85712710|ref|ZP_01043755.1| Uncharacterized conserved secreted protein [Idiomarina baltica
OS145]
gi|85693442|gb|EAQ31395.1| Uncharacterized conserved secreted protein [Idiomarina baltica
OS145]
Length = 397
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 35/115 (30%), Gaps = 9/115 (7%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI-RFPQEKESTCNVI-----KRNK 70
I FV+ GD N + + G Q ++ + E + +
Sbjct: 283 IAANGSFVVLGDLNAQAGASGVDGAMTQLLEHPRVNDVMPMSEGGANHSPDIEGSKYHTA 342
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQS---DLDTRRSKLSTHCPLTIEYDFEK 122
+ + + ++ ++ +L +R S H + ++ + +
Sbjct: 343 AWRKRVDYVLPSDDLIVKDAGIFWPVQGEPGYELMKKRDASSDHRLVWLDIELPE 397
>gi|326565908|gb|EGE16069.1| endonuclease/exonuclease/phosphatase [Moraxella catarrhalis
103P14B1]
gi|326571929|gb|EGE21934.1| endonuclease/exonuclease/phosphatase [Moraxella catarrhalis BC8]
gi|326577941|gb|EGE27805.1| endonuclease/exonuclease/phosphatase [Moraxella catarrhalis O35E]
Length = 249
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 12/113 (10%), Positives = 32/113 (28%), Gaps = 16/113 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + ++ + + ++AGDFN + + ++ E
Sbjct: 146 KQYQAIRDYIFT-LPADASLILAGDFNDWSKKSC---QALSSLGLSEVFLQVHGE----- 196
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ + + + + S LS H P++
Sbjct: 197 -----YPATFPAKMPVLSLDRIYVRRLKVHNAMVHGGVPW--SNLSDHLPISA 242
>gi|288560371|ref|YP_003423857.1| exodeoxyribonuclease III Xth1 [Methanobrevibacter ruminantium M1]
gi|288543081|gb|ADC46965.1| exodeoxyribonuclease III Xth1 [Methanobrevibacter ruminantium M1]
Length = 246
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 26/126 (20%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD---------------DFWQKMDPDGLLI 53
L K+ ++ +IAGDFN N I ++ D + L
Sbjct: 131 LLKYVEKNKDKN--LIIAGDFNIAHNDIDISNKDTKVSFTDEERSVLDKLESFGFVDALR 188
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
F +E+ S F + S +S + S H P
Sbjct: 189 LFNEEE-SFSYWK------NKEENDGARLDYFFVSESLKDK--VKSSSILVDVEGSKHLP 239
Query: 114 LTIEYD 119
+ +E +
Sbjct: 240 IELEIE 245
>gi|226502598|ref|NP_001151627.1| type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Zea mays]
gi|195648200|gb|ACG43568.1| type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Zea mays]
Length = 580
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 22/133 (16%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIR---------FPQEK 59
+ I + GD N ++ W+ + L E
Sbjct: 407 ETILGHDRIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQLRIEQRGGRVFVGWTEG 466
Query: 60 ESTCNVIKRNKSSLD-------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ ++ D R + + Q S+ S H
Sbjct: 467 NIYFPPTYKYSNNSDKYAGDDMNQKEKRRTPAWCDRILWYGAGLGQLSYVRGESRFSDHR 526
Query: 113 PLTIEYDFEKGNV 125
P+ + E ++
Sbjct: 527 PVYSVFSAEVESI 539
>gi|170113420|ref|XP_001887910.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164637271|gb|EDR01558.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1280
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 12/121 (9%), Positives = 33/121 (27%), Gaps = 12/121 (9%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGD-----TDDFWQKMDPDGLLIRFPQEKESTCNVI 66
D + I + GD + + + ++ + F +
Sbjct: 1128 RIDHRRDAIIAAIRTGDLSSLLTHDQLLREIKFNRGFRLRGFSEGPLLFAPTYKYDPRSN 1187
Query: 67 KRNKSSLD--YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ + S DR + + + Y + +S H P++ + +
Sbjct: 1188 EYDTSEKRRSPAWCDRILFRSHVASRIRQLHY-----RRYEANVSDHRPISAAFALTVKS 1242
Query: 125 V 125
+
Sbjct: 1243 L 1243
>gi|123974883|ref|XP_001314048.1| Endonuclease/Exonuclease/phosphatase family protein [Trichomonas
vaginalis G3]
gi|121896071|gb|EAY01233.1| Endonuclease/Exonuclease/phosphatase family protein [Trichomonas
vaginalis G3]
Length = 308
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 9/92 (9%), Positives = 19/92 (20%), Gaps = 11/92 (11%)
Query: 38 DTDDFWQKMDPDGLLIRFPQEKESTCNVI--------KRNKSSLDYFVIDRDNKNFLIDN 89
D ++ + F +E+ + F
Sbjct: 200 LYDQLQRERTSIHVFSGFSEEEITFPPTYKFDKDSMLYDTSKKERVPSYCDRILFFANS- 258
Query: 90 SFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
S S H P+ ++ F+
Sbjct: 259 --RKTLTVNSYTSYMDVMFSDHRPVVADFTFD 288
>gi|121711185|ref|XP_001273208.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Aspergillus clavatus NRRL 1]
gi|119401359|gb|EAW11782.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Aspergillus clavatus NRRL 1]
Length = 1162
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 27/123 (21%), Gaps = 17/123 (13%)
Query: 14 DQKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIRFPQEKESTCNVI- 66
++ I V GDFN + + +Q++ + L
Sbjct: 783 NKSIDDHDTIVWLGDFNYRIGLGNHEVRKLATQRNYQRLYENDQLNLQMMAGNVFQFYTE 842
Query: 67 ----------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + + Q + + S H P+
Sbjct: 843 GAIVFPPTYKYDIGRDDFDSSEKARIPAWCDRILWKGSNLRQLHYSSAHLQFSDHRPVWA 902
Query: 117 EYD 119
+
Sbjct: 903 VFS 905
>gi|294785528|ref|ZP_06750816.1| endonuclease/Exonuclease/phosphatase family protein [Fusobacterium
sp. 3_1_27]
gi|294487242|gb|EFG34604.1| endonuclease/Exonuclease/phosphatase family protein [Fusobacterium
sp. 3_1_27]
Length = 279
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 5/106 (4%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ K K IAGDFN ++ D + ++T R
Sbjct: 170 DYFQDKDKKENDIFIAGDFNLYALDESFR-PLYKH--ADKITYAIDPAIKTTIGTKGRAN 226
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S D F + +S + + + R +S H P+ I
Sbjct: 227 SY-DNFFFSQKYTQEFTGSS-GALDFSGDNPKLMREIISDHIPVFI 270
>gi|242096370|ref|XP_002438675.1| hypothetical protein SORBIDRAFT_10g024140 [Sorghum bicolor]
gi|241916898|gb|EER90042.1| hypothetical protein SORBIDRAFT_10g024140 [Sorghum bicolor]
Length = 1525
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 3/117 (2%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRK--INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ E+L++ + + +P ++ GDFN I + Q M + E +
Sbjct: 986 DRKLEFLEEIQNLVQNSELPVLLGGDFNLVRKIEEKSSGNVDLQMM-DAFNEMINTTELK 1044
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
R S + ++ ++ +++ + + T S H PL ++
Sbjct: 1045 EVIRTGSRYTWSNKQKPPIMCVLDRVLVSNSWEDNFNMTAVLTAPRVGSDHNPLIVD 1101
>gi|99080856|ref|YP_613010.1| endonuclease/exonuclease/phosphatase [Ruegeria sp. TM1040]
gi|99037136|gb|ABF63748.1| Endonuclease/exonuclease/phosphatase [Ruegeria sp. TM1040]
Length = 301
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 31/120 (25%), Gaps = 21/120 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q +++ + P ++AGDFN +++ G + R +
Sbjct: 201 EQAAHVERIVAELTALEGPMILAGDFNAVA-----WSHTVKRIGAAGGMARVGPYGATFE 255
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+D+ + + S H L + +
Sbjct: 256 LPPLGYPIGIDHVLAPKGLGVIERQPKL----------------ASDHHGLLARLPWPEA 299
>gi|29893671|gb|AAP06925.1| putative reverse transcriptase [Oryza sativa Japonica Group]
gi|108707404|gb|ABF95199.1| retrotransposon protein, putative, LINE subclass [Oryza sativa
Japonica Group]
Length = 870
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 15/117 (12%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------FWQKMDPDGLLIRFPQEKE 60
L+ + G ++I GDFN + + ++ + L P +
Sbjct: 126 LRHIRRLRPSPGEGWLILGDFNMIYRARDKNNSNLNLARMRRFRAVIDRCELHEIPLQNR 185
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+R K+ + N +++ L + S HCPL +
Sbjct: 186 KFTWSNERRKA-------TLVKLDRCFCNEEWDLAFPHHVLHALPTGPSDHCPLVLS 235
>gi|118374759|ref|XP_001020567.1| Endonuclease/Exonuclease/phosphatase family protein [Tetrahymena
thermophila]
gi|89302334|gb|EAS00322.1| Endonuclease/Exonuclease/phosphatase family protein [Tetrahymena
thermophila SB210]
Length = 253
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGD--TDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+++ +I GDFN + + + ++ ++ +
Sbjct: 152 KKQLDIKNNTIICGDFNEDCDGQRYCEEECVFDLLEQKKFFNAKKLYEQKSGTQDNLYTF 211
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S Y I + +F + N +I S+ D D S H P+ +
Sbjct: 212 SRKYKNI--NIDHFYVTNDININSFKIIDSD-----ASDHNPIFL 249
>gi|7512026|pir||T13173 RNA-directed DNA polymerase (EC 2.7.7.49) - fruit fly (Drosophila
melanogaster) transposon TART-B1
gi|603664|gb|AAC46494.1| putative reverse transcriptase [Drosophila melanogaster]
Length = 1084
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 34/120 (28%), Gaps = 6/120 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L + +A++ + F++ GD+N K G T + + +
Sbjct: 127 LPHHFTDVLNFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGTALYEAVQADSTAEII 186
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
D + + + + + S H P+ +E + +
Sbjct: 187 ATGCATHFP--HDTRKNPSAIDFSIC----KGLGRFEKRISSGADLSSDHLPILLEINLD 240
>gi|290960999|ref|YP_003492181.1| hypothetical protein SCAB_66421 [Streptomyces scabiei 87.22]
gi|260650525|emb|CBG73641.1| putative membrane protein [Streptomyces scabiei 87.22]
Length = 349
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 27/119 (22%), Gaps = 21/119 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L + + V+ GD N +N Q G +
Sbjct: 248 DKSANALGEAIAD--EPIRQVVLLGDLNGTMNDRALNAVTAQMRSTQG----AAGDGFGF 301
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ +D ++ + + + S H P+ +
Sbjct: 302 SWPASFPMARIDQIMVRG-----MEPRASWALP----------ETGSDHLPVAARVTID 345
>gi|224542024|ref|ZP_03682563.1| hypothetical protein CATMIT_01197 [Catenibacterium mitsuokai DSM
15897]
gi|224525081|gb|EEF94186.1| hypothetical protein CATMIT_01197 [Catenibacterium mitsuokai DSM
15897]
Length = 267
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 17/111 (15%), Positives = 30/111 (27%), Gaps = 4/111 (3%)
Query: 9 LKKW--ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ +W +P +AGDFN I + + R +
Sbjct: 156 INQWHKLKTIATKEVPVYLAGDFNAP--DIIPNQSYTTIKEDGWFDTRDLADDVQGRFTA 213
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ D V + + S+ T +S H L +E
Sbjct: 214 QGKIDGWDEAVDGMRIDYIWCNKKEHVKSHHVIFDGTHEDVVSDHFGLFME 264
>gi|254486461|ref|ZP_05099666.1| hypothetical protein RGAI101_1118 [Roseobacter sp. GAI101]
gi|214043330|gb|EEB83968.1| hypothetical protein RGAI101_1118 [Roseobacter sp. GAI101]
Length = 366
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 31/109 (28%), Gaps = 16/109 (14%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ K +P ++ GD N ++ L+ + N
Sbjct: 235 EASKDDMPAIVTGDLNDVA-----WSTTTRRFQRLSGLLDPRVGRGFY------NTFHAG 283
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ + D F ++S + R+ S H P+ +
Sbjct: 284 IPMMRWPLDHLFHDAEFRLIS-----MSRLRNIGSDHFPIMFSLALTQT 327
>gi|147832906|emb|CAN77369.1| hypothetical protein VITISV_033118 [Vitis vinifera]
Length = 861
Score = 35.6 bits (80), Expect = 2.2, Method: Composition-based stats.
Identities = 17/101 (16%), Positives = 27/101 (26%), Gaps = 11/101 (10%)
Query: 23 FVIAGDFNRKINSIG------DTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ +AGDFN +N D + D L
Sbjct: 145 WCVAGDFNAILNPEERSRGGSFNSDMRRFADVIENLRLKDLPLFGGPFTWSGGM----NN 200
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FLI+ + + S +S H P+ +E
Sbjct: 201 QSFSRLDRFLINEEWDCX-FSGSKQCVLPRPVSDHFPILLE 240
>gi|315223109|ref|ZP_07864977.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
anginosus F0211]
gi|315187798|gb|EFU21545.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
anginosus F0211]
Length = 271
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 14/107 (13%), Positives = 28/107 (26%), Gaps = 2/107 (1%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
++ ++ +P V+ GDFN + G + ++ + +
Sbjct: 167 EELLQCNMPLVLMGDFNNPVGYEGYQHILRSPLALQDSHAVA--ATVVGTATVEGDIAGW 224
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
F+I +S H L E F
Sbjct: 225 AGNKEALKIDYIFTSKDFNIEKSAVVFDGKATPVVSDHFGLEAEVAF 271
>gi|307353970|ref|YP_003895021.1| endonuclease/exonuclease/phosphatase [Methanoplanus petrolearius
DSM 11571]
gi|307157203|gb|ADN36583.1| Endonuclease/exonuclease/phosphatase [Methanoplanus petrolearius
DSM 11571]
Length = 276
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 8/112 (7%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ +T + GDFN + F+++ + + + N + ++
Sbjct: 167 ENDQTSNNRIFCGDFNILESDHNPHYSFFEEWEYEFYSSLSNFHLKDA--YRYHNPAKME 224
Query: 75 YFV-----IDRDNKNFLIDNSFSIVSYDQSDL-DTRRSKLSTHCPLTIEYDF 120
Y +F + + + + R +LS H L + +F
Sbjct: 225 YSWVGRTGDGYRYDHFFASENLIPNIIECKYVHEPREKRLSDHSSLVCKIEF 276
>gi|251788636|ref|YP_003003357.1| hypothetical protein Dd1591_1005 [Dickeya zeae Ech1591]
gi|247537257|gb|ACT05878.1| Endonuclease/exonuclease/phosphatase [Dickeya zeae Ech1591]
Length = 263
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 21/105 (20%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
Q P ++AGDFN + KE + +R ++
Sbjct: 178 QLEHHSGPVIMAGDFNAWSQPR---------VSALYRFAYRMGLKEVVFSDDQRRRAFGR 228
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++D+S + + S H PL +E++
Sbjct: 229 PLDFVFYRELDVMDSSVMVTNA------------SDHNPLWVEFN 261
>gi|254430067|ref|ZP_05043774.1| endonuclease/exonuclease/phosphatase family [Alcanivorax sp. DG881]
gi|196196236|gb|EDX91195.1| endonuclease/exonuclease/phosphatase family [Alcanivorax sp. DG881]
Length = 300
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 13/107 (12%), Positives = 27/107 (25%), Gaps = 20/107 (18%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ + + V+ GDFN ++ +
Sbjct: 195 YLARLLADYKYVVMMGDFNCRLTHLD-NSPLAALGLQTVQADNL------NTYPSWAPDR 247
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+D+ ++ D ++ + LS H PL E
Sbjct: 248 HIDHILLSPDLESRHTRVLTDCL-------------LSDHLPLATEI 281
>gi|154492028|ref|ZP_02031654.1| hypothetical protein PARMER_01659 [Parabacteroides merdae ATCC
43184]
gi|154088269|gb|EDN87314.1| hypothetical protein PARMER_01659 [Parabacteroides merdae ATCC
43184]
Length = 299
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 16/154 (10%), Positives = 36/154 (23%), Gaps = 42/154 (27%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKM----------------- 46
++ + L K+ ++ GDFN D + ++
Sbjct: 145 KEAQMLTKYIQDNQLDN--CMVMGDFNAYSPFDADWVETHAQLIKNKQKWDAEQETYRNM 202
Query: 47 ----------------DPDGLLIRFPQEKESTCNVI---KRNK-SSLDYFVIDRDNKNFL 86
+ + + T R + I L
Sbjct: 203 RDGRLDYSVLSQFLSIGLTDICRLYVPADKRTTFPTAFLYRWQHGDTRLHGISERLDYIL 262
Query: 87 IDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S V + +S H P++++
Sbjct: 263 VSPSLVSRCVDAHIHNGIE-TEGISDHYPVSVDL 295
>gi|325568346|ref|ZP_08144713.1| RgfB protein [Enterococcus casseliflavus ATCC 12755]
gi|325158115|gb|EGC70268.1| RgfB protein [Enterococcus casseliflavus ATCC 12755]
Length = 276
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 30/115 (26%), Gaps = 8/115 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E + ++ T +I GDFN S G + + +
Sbjct: 163 QQTEA---FLAERADT---LLILGDFNNDAASSGHQLVLDSSLQLQDSFLTAAETTGEAS 216
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
V D Y+ TR +S H + + +
Sbjct: 217 VVK-AIDGWQDNR-EALRIDYVFASKDLQATEYEVVFDGTRTPIVSDHFGIKVVF 269
>gi|301615392|ref|XP_002937163.1| PREDICTED: transposon TX1 uncharacterized 149 kDa protein-like
[Xenopus (Silurana) tropicalis]
Length = 1131
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 12/111 (10%)
Query: 22 PFVIAGDFNRKINSIGDT-------DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
P VIAGDFN ++ D + + S +V R D
Sbjct: 132 PVVIAGDFNCVLSKEDREGNLDFSLDVSSKMLSGIMQDFHLKDAFVSGGDVNDRFSWFSD 191
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
V FLI + + + + S H L E F K +V
Sbjct: 192 AGVSKSRIDMFLISSDIQ-----VNKYVSFNNIFSDHRLLQCELLFGKNHV 237
>gi|255558848|ref|XP_002520447.1| type I inositol polyphosphate 5-phosphatase, putative [Ricinus
communis]
gi|223540289|gb|EEF41860.1| type I inositol polyphosphate 5-phosphatase, putative [Ricinus
communis]
Length = 441
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 14/141 (9%), Positives = 29/141 (20%), Gaps = 28/141 (19%)
Query: 12 WADQKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIR----------- 54
+KI + GD N ++ W+ + L
Sbjct: 280 RVPEKIFEHDRAIWLGDLNYRIALSYSETRKLLERNDWKALFDKDQLKIEREAGRVFKGW 339
Query: 55 -----FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ R + + Q S+ S
Sbjct: 340 KEGKIYFAPTYKYSYNSDTYAGETTETKNKRRTPAWCDRILWRGNGIHQLSYVRWESQFS 399
Query: 110 THCPL----TIEYDF--EKGN 124
H P+ ++ + + N
Sbjct: 400 DHRPVCSTFMVDVELTDNESN 420
>gi|47155293|emb|CAC81920.1| inositol 1,4,5-trisphosphate 5-phosphatase [Arabidopsis thaliana]
Length = 582
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 27/123 (21%), Gaps = 22/123 (17%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIR-------------- 54
+ I + GD N ++ W+ + + L
Sbjct: 413 ENILQHDRVIWLGDLNYRIALSYRSAKALVEMQNWRALLENDQLRIEQKRGHVFKGWNEG 472
Query: 55 --FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ N R + R + + Q S+ S H
Sbjct: 473 KIYFPPTYKYSNNSDRYAGGDLHPKEKRRTPAWCDRILWHGEGLHQLSYVRGESRFSDHR 532
Query: 113 PLT 115
P+
Sbjct: 533 PVY 535
>gi|326569254|gb|EGE19315.1| endonuclease/exonuclease/phosphatase [Moraxella catarrhalis BC7]
gi|326575442|gb|EGE25367.1| endonuclease/exonuclease/phosphatase [Moraxella catarrhalis
101P30B1]
Length = 249
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 12/113 (10%), Positives = 32/113 (28%), Gaps = 16/113 (14%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + ++ + + ++AGDFN + + ++ E
Sbjct: 146 KQYQAIRDYIFT-LPADASLILAGDFNDWSKKSC---QALSSLGLSEVFLQVHGE----- 196
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ + + + + S LS H P++
Sbjct: 197 -----YPATFPAKMPVLSLDRIYVRRLKVHNAMVHGGVPW--SNLSDHLPISA 242
>gi|321461856|gb|EFX72884.1| hypothetical protein DAPPUDRAFT_325798 [Daphnia pulex]
Length = 415
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 29/108 (26%), Gaps = 7/108 (6%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN-KS 71
+ + P+++ GDFN + + + C + +
Sbjct: 204 IEAMLDRSNPYLLGGDFN---GHHPLWESNATVNKAGKSVYEALINDQDACLITPPYLGT 260
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
LD + I + S + S H P+ I +
Sbjct: 261 RLDPVSGKASTIDLTITAASIATSAKITLGPYMG---SDHLPIIITLN 305
>gi|301627871|ref|XP_002943090.1| PREDICTED: hypothetical protein LOC100497457 [Xenopus (Silurana)
tropicalis]
Length = 1247
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 17/141 (12%), Positives = 29/141 (20%), Gaps = 31/141 (21%)
Query: 3 SQQGEWLKKWADQKIKTGI--------------PFVIAGDFNRKI-----------NSIG 37
Q + + WA + + + + GDFN N
Sbjct: 254 KQLVQDVMNWAKEVDRDEVLTQQDRVINSLRSFNVMAGGDFNESHLWSLDKCGISTNPPH 313
Query: 38 DTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ + L + S L +
Sbjct: 314 SKSKLFSDLLDHTNLRDVWRILNPFSKEFTFYSHSH---GTGTRIDYILTPTNLLTH--- 367
Query: 98 QSDLDTRRSKLSTHCPLTIEY 118
SD S H P++I
Sbjct: 368 VSDATIGNFTYSDHTPISITI 388
>gi|229089490|ref|ZP_04220760.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-42]
gi|228693876|gb|EEL47569.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus Rock3-42]
Length = 263
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 6/118 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q L + D + + GDFN G+ ++ + ++ E
Sbjct: 151 FKDQVNRLMERVD----SNELSFLMGDFNNNARLQGEGYEYMMQEGLYDTYELAIEKDEG 206
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
T + + D + L + S I S T R +S H + ++ D
Sbjct: 207 TTV--QGEIAGWDENKHNLRIDLILCNRSEKIRSSKVVFNGTNRKVISDHFGVEVQVD 262
>gi|167562541|ref|ZP_02355457.1| endonuclease/exonuclease/phosphatase family superfamily protein
[Burkholderia oklahomensis EO147]
Length = 171
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 10/102 (9%), Positives = 22/102 (21%), Gaps = 1/102 (0%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
++ GDFN S F + +
Sbjct: 69 ARAADAIVCGDFNSAYRSDAYRR-FLAPFPDAPRFVDAWLARHPDETPPMTAGVYDTEQW 127
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + +++ + S H P+ +E
Sbjct: 128 KEGPLTCDFAFVTDTLIGRLSRCEIDGAVRASDHQPIALELS 169
>gi|134096822|ref|YP_001102483.1| phytase [Saccharopolyspora erythraea NRRL 2338]
gi|291005133|ref|ZP_06563106.1| phytase [Saccharopolyspora erythraea NRRL 2338]
gi|133909445|emb|CAL99557.1| phytase [Saccharopolyspora erythraea NRRL 2338]
Length = 399
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 30/121 (24%), Gaps = 20/121 (16%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ---------------EKES 61
++ G PFVIAGD N N D ++ ++
Sbjct: 272 LERGAPFVIAGDQNADPNDGDSADRAATQLLNAQRVVDPRPGSFGAVEAARNQGGANTGH 331
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-----SDLDTRRSKLSTHCPLTI 116
D + L + D +R + S H + +
Sbjct: 332 RGAPFFDTADFGDQSPGNLRVDYVLPSLPLVALRSGVFWPGGHDELSRLNDTSDHHLVWV 391
Query: 117 E 117
+
Sbjct: 392 D 392
>gi|121719227|ref|XP_001276326.1| inositol polyphosphate phosphatase, putative [Aspergillus clavatus
NRRL 1]
gi|119404524|gb|EAW14900.1| inositol polyphosphate phosphatase, putative [Aspergillus clavatus
NRRL 1]
Length = 1195
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 7/83 (8%), Positives = 16/83 (19%), Gaps = 7/83 (8%)
Query: 39 TDDFWQKMDPDGLLIRFPQEKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ I F + +
Sbjct: 1061 KNPGFRLRSFTEAPITFAPTYKYDVGTDEYDTSEKKRSPAWCDRILYRGLG------RIK 1114
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
Q D + S H P++ +
Sbjct: 1115 QLDYRRLEVRASDHRPVSASFKL 1137
>gi|254885217|ref|ZP_05257927.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|294777877|ref|ZP_06743321.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
vulgatus PC510]
gi|319640383|ref|ZP_07995107.1| endonuclease/exonuclease/phosphatase [Bacteroides sp. 3_1_40A]
gi|254838010|gb|EET18319.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|294448331|gb|EFG16887.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
vulgatus PC510]
gi|317387986|gb|EFV68841.1| endonuclease/exonuclease/phosphatase [Bacteroides sp. 3_1_40A]
Length = 472
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 33/138 (23%), Gaps = 21/138 (15%)
Query: 3 SQQGEW---LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+ + LK + Q P +++GDFN +S D D + M+ +
Sbjct: 337 RRAAQLQSILKAFPSQWNTMETPLIVSGDFN--SDSHLDWKDDTKNMNGHNGYVIEWPTS 394
Query: 60 E---STCNVIKRNKSSLDYFVID-------------RDNKNFLIDNSFSIVSYDQSDLDT 103
+ + + D +
Sbjct: 395 KLMEKAHFIDSYREIHPDVKKYPCLTWSTMAKNELQYRIDFIYYKGKDIKAIQSEMIDKH 454
Query: 104 RRSKLSTHCPLTIEYDFE 121
S H + ++ +
Sbjct: 455 PVRYPSDHAAVVTTFNLK 472
>gi|147788232|emb|CAN71594.1| hypothetical protein VITISV_005028 [Vitis vinifera]
Length = 363
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 24/104 (23%), Gaps = 11/104 (10%)
Query: 20 GIPFVIAGDFNRK------INSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
P+ + GDFN + + + + L +
Sbjct: 149 DDPWCLGGDFNITLFQHERSSQRRISSAMRRFAESVDDLELVDLPLQGGEFTWSGG---- 204
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ S+ S H P+ +E
Sbjct: 205 LNNQAWARLDRFLVSPSWLDQFSGV-TQGRLSRPTSDHFPIVLE 247
>gi|126463279|ref|YP_001044393.1| hypothetical protein Rsph17029_2519 [Rhodobacter sphaeroides ATCC
17029]
gi|126104943|gb|ABN77621.1| conserved hypothetical protein [Rhodobacter sphaeroides ATCC 17029]
Length = 309
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 12/120 (10%), Positives = 26/120 (21%), Gaps = 5/120 (4%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L+ P ++ G N + + L
Sbjct: 191 ARLLEGRL-PFPAPEGPVLLMGKANIDPLAGDGPRAAIAALLAHPALQDPAPRGPDGSRA 249
Query: 66 IKRNKSSLDY----FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ + + S + L ++ S H P+ +E D
Sbjct: 250 TADFRADDGPGLLRTDYILPARGLPVTASGVLWPPPGDPLAAVAAQASRHRPVWVELDLP 309
>gi|116201803|ref|XP_001226713.1| hypothetical protein CHGG_08786 [Chaetomium globosum CBS 148.51]
gi|88177304|gb|EAQ84772.1| hypothetical protein CHGG_08786 [Chaetomium globosum CBS 148.51]
Length = 1577
Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 28/117 (23%), Gaps = 17/117 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK------MDPDGLLIRFPQEKEST 62
L + + P V+AGDFN D F + + L +
Sbjct: 545 LLQTLLSRPAPAYPVVLAGDFNLHH---PHWDRFGRYERKAEALLELALQWDLDLRTPAG 601
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+F Y R K S H P +E D
Sbjct: 602 TITR---APQGAQRGRTSTIDHFWASVGLQTTYYG----LEYRGK-SDHYPQILEAD 650
>gi|323349895|gb|EGA84106.1| Ccr4p [Saccharomyces cerevisiae Lalvin QA23]
Length = 843
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 38/153 (24%), Gaps = 33/153 (21%)
Query: 5 QGEWLKKWADQKIKTGI-----------PFVIAGDFNRKINSIGDT--DDFWQKMDPDGL 51
Q L + +K P +I GDFN INS + ++ +G
Sbjct: 685 QVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVYELINTGRVQIHQEGN 744
Query: 52 LIRF-------------------PQEKESTCNVIKRNKSSLDYFVI-DRDNKNFLIDNSF 91
F + N +DY + +
Sbjct: 745 GRDFGYMSEKNFSHNLALKSSYNCIGELPFTNFTPSFTDVIDYIWFSTHALRVRGLLGEV 804
Query: 92 SIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ S H PL ++F K N
Sbjct: 805 DPEYVSKFIGFPNDKFPSDHIPLLARFEFMKTN 837
>gi|302555042|ref|ZP_07307384.1| endonuclease/exonuclease/phosphatase [Streptomyces
viridochromogenes DSM 40736]
gi|302472660|gb|EFL35753.1| endonuclease/exonuclease/phosphatase [Streptomyces
viridochromogenes DSM 40736]
Length = 439
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 10/124 (8%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW---QKMDPDGLLIR---FPQEK 59
E L + G ++ GD N + GD + + P +
Sbjct: 170 VEQLSDFIQAN-SAGNAIIVMGDTNTRYTRSGDNIRTLLSENGLTDAWVQRVKGGTPPAQ 228
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD---LDTRRSKLSTHCPLTI 116
V + D V+D+ + + Y LD+ LS H P T+
Sbjct: 229 GGAPLVCPTTAPTDDCEVVDKILYRGSKLVNLNATRYHNDWASFLDSAGGNLSDHFPHTV 288
Query: 117 EYDF 120
++ +
Sbjct: 289 DFSY 292
>gi|159469496|ref|XP_001692899.1| predicted protein [Chlamydomonas reinhardtii]
gi|158277701|gb|EDP03468.1| predicted protein [Chlamydomonas reinhardtii]
Length = 1192
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD 40
L+ D + G V+ GDFN D+D
Sbjct: 265 RALQHRLDGFLAAGRRLVVLGDFNIAPERRDDSD 298
>gi|118591884|ref|ZP_01549279.1| Endonuclease/exonuclease/phosphatase family protein [Stappia
aggregata IAM 12614]
gi|118435527|gb|EAV42173.1| Endonuclease/exonuclease/phosphatase family protein [Stappia
aggregata IAM 12614]
Length = 351
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 14/114 (12%), Positives = 29/114 (25%), Gaps = 14/114 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ + + G + GD+N +Q+ L +
Sbjct: 246 EADAVIDTLKA--GNGSNILAIGDWNSSP-----WSARFQQTLERNGLKTAYPDG----- 293
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + DY + +D ++ S H PL +E
Sbjct: 294 WPQTTRFFFDYSLHW--ILGAPVDQFAVSRDIQIVNVSLGPDIGSDHLPLIVEI 345
>gi|325954749|ref|YP_004238409.1| endonuclease/exonuclease/phosphatase [Weeksella virosa DSM 16922]
gi|323437367|gb|ADX67831.1| Endonuclease/exonuclease/phosphatase [Weeksella virosa DSM 16922]
Length = 325
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 34/129 (26%), Gaps = 25/129 (19%)
Query: 18 KTGIPFVIAGDFNRKIN------------------SIGDTDDFWQKMDPDGLLIRFPQEK 59
+ V+ GDFN N S + F + M+ D I + +++
Sbjct: 190 EHEPNIVMMGDFNDTPNNSQLINILSTKANLQDVRSNDLFNPFVKMMNYDTGTIVYKKQR 249
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-------LSTHC 112
++ N F + + S + S H
Sbjct: 250 LIFDQMLFSKNFIKKDSFFHWKKSQIFNPNKFIFNNINTSTQPQNTFRGKNYFGGPSDHF 309
Query: 113 PLTIEYDFE 121
P+ ++
Sbjct: 310 PIISIINYN 318
>gi|242095430|ref|XP_002438205.1| hypothetical protein SORBIDRAFT_10g009570 [Sorghum bicolor]
gi|241916428|gb|EER89572.1| hypothetical protein SORBIDRAFT_10g009570 [Sorghum bicolor]
Length = 468
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 6/123 (4%)
Query: 2 LSQQGEWLK-KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
L + LK +W D++++ G N + M R +
Sbjct: 314 LYELCSLLKYQWTDEEVRNA-----TGCSNVVVAEHPLKLSSSYAMLKGNSDNRGLHGEP 368
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + K+ ++DY R + + ++ I ++ R S H P+ E+ F
Sbjct: 369 SATSYHKKFLGTVDYLWHTRGIECSRVLDTLPIGVLRRTRGLPTREIGSDHLPIVAEFSF 428
Query: 121 EKG 123
+
Sbjct: 429 PES 431
>gi|291241909|ref|XP_002740853.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 665
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 9/100 (9%), Positives = 24/100 (24%), Gaps = 12/100 (12%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDG---LLIRFPQEKESTCNVIKRNKSSLDYFV 77
+I GD+N + + + + + + + ++
Sbjct: 304 PNVMIIGDWNADPTTNSNFGEEMNEFCNNAGLIISDVEFIGTSVFTFLSDSYGTTYW--- 360
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+S + S H P++I
Sbjct: 361 ------LDHCVSSVNAHRSIVDVNICYDYVTSDHMPVSIT 394
>gi|114570418|ref|YP_757098.1| endonuclease/exonuclease/phosphatase [Maricaulis maris MCS10]
gi|114340880|gb|ABI66160.1| Endonuclease/exonuclease/phosphatase [Maricaulis maris MCS10]
Length = 335
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 26/115 (22%), Gaps = 13/115 (11%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L + + ++ GDFN S T + S
Sbjct: 227 ARALAR------EPQDTLIVMGDFNAAAPSRALTRIERDLDLERRSIAL--PSWPSEGLF 278
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + ++ V+ + S H PL
Sbjct: 279 TRDGGIAPPLPPMLVGIDHIFAGEAWQTVA-----IHAGPDTGSDHRPLMARVRL 328
>gi|47567194|ref|ZP_00237908.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus G9241]
gi|47556037|gb|EAL14374.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus G9241]
Length = 263
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+ + + + GDFN ++ G + + L ++ ++
Sbjct: 156 NRLMEHVDSNEISFLMGDFNNNARLQGEGYEYMMQKGLHDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S + S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKHNLRIDLILCNRSEKVRSSKVIFNGTNRNIISDHFGVEVQVD 262
>gi|327268597|ref|XP_003219083.1| PREDICTED: synaptojanin-1-like [Anolis carolinensis]
Length = 1295
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 11/82 (13%), Positives = 20/82 (24%), Gaps = 6/82 (7%)
Query: 46 MDPDGLLIRFPQEKESTCN---VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ D + + +R + D S I ++ L
Sbjct: 788 LFSDDYDTSEKCRTPAWTDRILWRRRKWPFDRSAEDMDLLNSTCHDESKLIYTWSPGTLL 847
Query: 103 TRRS---KLSTHCPLTIEYDFE 121
K S H P+ D +
Sbjct: 848 YYGRAELKTSDHRPVVAMIDID 869
>gi|303237736|ref|ZP_07324296.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
disiens FB035-09AN]
gi|302482188|gb|EFL45223.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
disiens FB035-09AN]
Length = 348
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 17/146 (11%), Positives = 40/146 (27%), Gaps = 32/146 (21%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDG--------LLIRF 55
+Q + LK + + ++ GD N + + K + D
Sbjct: 199 KQVKALKDSLL-REDPNVKVLVMGDMNDDPTNKSMHECLSAKANIDEVGEGDMYNPFYNI 257
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
++ + + + D V+ + N FS + + ++ + R
Sbjct: 258 LVKEGTGTLQYQGKWNLFDQIVMTPNMLNKNNQKDFSTLKFWRNQIFRRDYLFQETGKYK 317
Query: 109 ----------------STHCPLTIEY 118
S H P+ +
Sbjct: 318 GNTKRTTAGGVWLDGYSDHLPVVVYL 343
>gi|294668724|ref|ZP_06733817.1| endonuclease/exonuclease/phosphatase family protein [Neisseria
elongata subsp. glycolytica ATCC 29315]
gi|291309241|gb|EFE50484.1| endonuclease/exonuclease/phosphatase family protein [Neisseria
elongata subsp. glycolytica ATCC 29315]
Length = 250
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 33/117 (28%), Gaps = 14/117 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + ++ I P ++AGDFN + + + + E T
Sbjct: 147 KQYVAIFEYVTTYIPPEAPLILAGDFNDWRHKSTLN--IGSTLGLTEVFLDRHGELPKTF 204
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + + D N + + LS H PL+
Sbjct: 205 PARMPVLSLDRIYTRNLDILNATLHSE------------EPWQYLSDHLPLSATVRM 249
>gi|163739629|ref|ZP_02147038.1| endonuclease/exonuclease/phosphatase family protein [Phaeobacter
gallaeciensis BS107]
gi|161387088|gb|EDQ11448.1| endonuclease/exonuclease/phosphatase family protein [Phaeobacter
gallaeciensis BS107]
Length = 241
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 29/115 (25%), Gaps = 22/115 (19%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + + + +P V AGDFN +D +RF + S
Sbjct: 143 EQVHHLAEVIAR--EPELPTVWAGDFNDWSRQP--------VLDHLAPQLRFVPPRASFP 192
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ +V S H P+ +
Sbjct: 193 -----------ALRPMGALDRIAVSAGLEVVDSGV-YRTRPAHIASDHLPVWADL 235
>gi|331702659|ref|YP_004399618.1| endonuclease/exonuclease/phosphatase [Lactobacillus buchneri NRRL
B-30929]
gi|329130002|gb|AEB74555.1| Endonuclease/exonuclease/phosphatase [Lactobacillus buchneri NRRL
B-30929]
Length = 355
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 16/134 (11%), Positives = 39/134 (29%), Gaps = 16/134 (11%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKI--NSIGDTDDFWQKMDPDGLL------ 52
+ Q L + + G ++AGD+N + NS + + M+
Sbjct: 225 VRKAQINKLFAKMTTEQQAGNYVIVAGDYNHDMLGNSPAVFETTSKPMNWTHPFPADQLP 284
Query: 53 -----IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
+ + +V F++ ++ + + K
Sbjct: 285 KGFRIAKQGLAQAKVPSVRANGTPYHPGKTFTSIIDGFIVSDNVQVNRVHV---KSLGFK 341
Query: 108 LSTHCPLTIEYDFE 121
S H P +++ +
Sbjct: 342 NSDHNPEVMDFKLK 355
>gi|320186403|gb|EFW61135.1| hypothetical protein SGF_01407 [Shigella flexneri CDC 796-83]
Length = 219
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN ++M+ R ++ +R ++
Sbjct: 129 DQIAHHSGPVIMAGDFNA---------WSRRRMNALYRFAREMSLRQVRFTDDQRRRAFG 179
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 180 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 213
>gi|297814428|ref|XP_002875097.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297320935|gb|EFH51356.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 424
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 30/129 (23%), Gaps = 23/129 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLIR------------ 54
+KI + GD N +I+ W + + L
Sbjct: 254 LPKKILDHDRVIFLGDLNYRISLPEEKTRLLVESKEWNILLENDQLRMEILNGQIFRGWQ 313
Query: 55 -----FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F + N + + + Q + +K+S
Sbjct: 314 EGIVKFAPTYKYVPNSDLYYGCITYKKDEKKRAPAWCDRIIWYGNGLKQHEYTRGETKIS 373
Query: 110 THCPLTIEY 118
H P+ +
Sbjct: 374 DHRPVKAIF 382
>gi|295680429|ref|YP_003609003.1| endonuclease/exonuclease/phosphatase [Burkholderia sp. CCGE1002]
gi|295440324|gb|ADG19492.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. CCGE1002]
Length = 250
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 27/112 (24%), Gaps = 19/112 (16%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+++ + +P ++ GD N + F L+ F + +
Sbjct: 153 QVEQVLQRFDTPALPVILLGDLN---------EWFVYGRTLRRLVTHFRRATALRTFPTR 203
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++ D R S H PL
Sbjct: 204 ---------FPLFALDRIWVHPGERLLRVDVHRTALSRV-ASDHYPLIAHIS 245
>gi|270015323|gb|EFA11771.1| hypothetical protein TcasGA2_TC004098 [Tribolium castaneum]
Length = 1336
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 10/115 (8%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L++ P + AGDFN K + ++ + +G + ++ +
Sbjct: 596 QIPILEEDLQTLFDGNTPTIAAGDFNAKHI-----NWGSRRSNRNGNFLNGFTDQNLDIS 650
Query: 65 VI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
V+ + D + I + Q L S H P+ ++
Sbjct: 651 VMAPVEPTFYRNSDGAADILDVAIVKNVVH----QVRLTAINDLSSDHNPVLMQI 701
>gi|107022880|ref|YP_621207.1| endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia AU
1054]
gi|116686877|ref|YP_840124.1| endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
HI2424]
gi|105893069|gb|ABF76234.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia AU
1054]
gi|116652592|gb|ABK13231.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
HI2424]
Length = 263
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 20/117 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + +++ +P ++ GD N + F + L+ RF +
Sbjct: 156 ERSAQ-VQRLLAAFDTGAMPVILLGDIN---------EWFVRGRALQALVTRFRRAPAPR 205
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I +V R S H PL
Sbjct: 206 TFPT---------VCPVFSLDRIWIHPGELLVDVVVHRSARARH-ASDHYPLVARMR 252
>gi|49479897|ref|YP_034699.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|196045232|ref|ZP_03112464.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus 03BB108]
gi|218901573|ref|YP_002449407.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus AH820]
gi|225862411|ref|YP_002747789.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus 03BB102]
gi|228925624|ref|ZP_04088713.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228931871|ref|ZP_04094767.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|229120029|ref|ZP_04249284.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus 95/8201]
gi|229182756|ref|ZP_04309996.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BGSC 6E1]
gi|49331453|gb|AAT62099.1| possible endonuclease/exonuclease/phosphatase family protein
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|196023816|gb|EDX62491.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus 03BB108]
gi|218537236|gb|ACK89634.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus AH820]
gi|225785970|gb|ACO26187.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus 03BB102]
gi|228600729|gb|EEK58309.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BGSC 6E1]
gi|228663495|gb|EEL19080.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus 95/8201]
gi|228827851|gb|EEM73589.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228834102|gb|EEM79650.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 263
Score = 35.6 bits (80), Expect = 2.4, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 6/118 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q L + D + + GDFN G+ ++ + ++ E
Sbjct: 151 FKDQVNRLMERVD----SNELSFLMGDFNNNARLQGEGYEYMMQEGLYDTYELAIEKDEG 206
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
T + + D + L + S I S T R +S H + ++ D
Sbjct: 207 TTV--QGEIAGWDENKHNLRIDLILCNRSEKIRSSKVVFNGTNRKVISDHFGVEVQVD 262
>gi|302505072|ref|XP_003014757.1| DNA lyase Apn2 [Arthroderma benhamiae CBS 112371]
gi|291178063|gb|EFE33854.1| DNA lyase Apn2 [Arthroderma benhamiae CBS 112371]
Length = 601
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 13/109 (11%), Positives = 33/109 (30%), Gaps = 12/109 (11%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P GD + D ++ P + ++ S +DY +
Sbjct: 202 RPVGSTGDTHDTETLPVLRD-LCREFHPSRTGMYTCWNQKVNARP-GNYGSRIDYILCSD 259
Query: 81 DNKNFLIDNSFSI----------VSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ +++ ++++ + +L + S HCP+
Sbjct: 260 NIRSWFVESNIQEGLIVCVKLELIYRSFKNLLISNEQGSDHCPVYASIS 308
>gi|301122963|ref|XP_002909208.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262099970|gb|EEY58022.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 542
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 13/102 (12%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK-ESTCNVIKRNKSSLDYF 76
V+ GDFN + F M+ F + +TC+V
Sbjct: 165 ADDNLIVLVGDFNALKSYSAMQILFENNMEDPSDETTFCGDMLSATCSVKYDFTLFR--- 221
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ + + S +D S H L +
Sbjct: 222 ---------AQSDDACHLKSEISRIDYDGCYSSDHAGLIGSF 254
>gi|253566553|ref|ZP_04844006.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251944725|gb|EES85200.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
Length = 608
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 29/102 (28%), Gaps = 21/102 (20%)
Query: 21 IPFVIAGDFNRKINSIGDTDD--FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
PF +AGDFN +S D +Q + +S +
Sbjct: 164 KPFFLAGDFNSDADSGFIKDLKSTFQILSNPKQ---------------PTYPASEPKETL 208
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
D +F + S D S H PL +E
Sbjct: 209 DYLIALKQETPTFVVNSARVIDEPL----ASDHRPLLVEVRM 246
>gi|238878752|gb|EEQ42390.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 785
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 30/128 (23%), Gaps = 24/128 (18%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL----IRFPQEKESTCNVIKRNKSSLD 74
V+ GDFN F ++ + K +
Sbjct: 653 KNSSIVVCGDFNSV-KDSAVYQLFSTGASKGHEDMNGRDYGKFTEDGFHHPFKLKSAYEA 711
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------------------SKLSTHCPLT 115
+ N ++ + Y L + + S H P+
Sbjct: 712 VGELPFTNLTPAFTDNIDYIWYSTPTLQVKGLLGRVDEEYTSHSIGFPDANFPSDHVPIL 771
Query: 116 IEYDFEKG 123
++ +KG
Sbjct: 772 AKFQLKKG 779
>gi|50307403|ref|XP_453680.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642814|emb|CAH00776.1| KLLA0D13860p [Kluyveromyces lactis]
Length = 941
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 18/118 (15%)
Query: 16 KIKTGIPFVIAGDFN--RKINSIGDT--------------DDFWQKMDPDGLLIRFPQEK 59
+IK + GDFN +++ D Q+M F + +
Sbjct: 689 RIKDHDGVIWMGDFNFRILLSNDDVRQAIIDKNYHRLFEKDQLNQQMISGESFPFFDEME 748
Query: 60 ESTCNVIKRNKSSL--DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ K N + D R S + + S H P+
Sbjct: 749 ITFPPTYKFNPGTDVYDTSEKMRIPAWTDRILSRGEILRQELYGSAEDIVFSDHRPVY 806
>gi|49183387|ref|YP_026639.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Sterne]
gi|165870723|ref|ZP_02215376.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0488]
gi|167634744|ref|ZP_02393063.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0442]
gi|167641246|ref|ZP_02399499.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0193]
gi|170688988|ref|ZP_02880189.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0465]
gi|170707115|ref|ZP_02897571.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0389]
gi|177654552|ref|ZP_02936408.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0174]
gi|190567531|ref|ZP_03020444.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis Tsiankovskii-I]
gi|227813041|ref|YP_002813050.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. CDC 684]
gi|254686762|ref|ZP_05150620.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. CNEVA-9066]
gi|254724838|ref|ZP_05186621.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A1055]
gi|254739015|ref|ZP_05196717.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Western North America USA6153]
gi|254744602|ref|ZP_05202281.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Kruger B]
gi|254756141|ref|ZP_05208170.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Vollum]
gi|254761959|ref|ZP_05213808.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Australia 94]
gi|49177314|gb|AAT52690.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Sterne]
gi|164713557|gb|EDR19081.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0488]
gi|167510754|gb|EDR86147.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0193]
gi|167529818|gb|EDR92566.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0442]
gi|170127893|gb|EDS96764.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0389]
gi|170667089|gb|EDT17851.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0465]
gi|172080664|gb|EDT65747.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0174]
gi|190561318|gb|EDV15290.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis Tsiankovskii-I]
gi|227005247|gb|ACP14990.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. CDC 684]
Length = 263
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 6/119 (5%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ Q L + D + + GDFN G+ ++ + ++ E
Sbjct: 150 LFKGQVNRLMERVD----SNELSFLMGDFNNNARLQGEGYEYMMQEGLYDTYELAIEKDE 205
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
T + + D + L + S I S T R +S H + ++ D
Sbjct: 206 GTTV--QGEIAGWDENKHNLRIDLILCNRSEKIRSSKVVFNGTNRKIISDHFGVEVQVD 262
>gi|9743345|gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 13/107 (12%), Positives = 25/107 (23%), Gaps = 15/107 (14%)
Query: 21 IPFVIAGDFNRK---------INSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ + GDFN + +M L+ P
Sbjct: 92 DKWCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDLVEMPAHGNGFTW-----AG 146
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
I + + + S+ + S H P+ I+
Sbjct: 147 RRGDHWIQCRLDRAFGNKEWFCF-FPVSNQTFLDFRGSDHRPVLIKL 192
>gi|30260540|ref|NP_842917.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Ames]
gi|47525644|ref|YP_016993.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. 'Ames Ancestor']
gi|229601471|ref|YP_002864988.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0248]
gi|30253908|gb|AAP24403.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. Ames]
gi|47500792|gb|AAT29468.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. 'Ames Ancestor']
gi|229265879|gb|ACQ47516.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
anthracis str. A0248]
Length = 263
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 6/119 (5%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ Q L + D + + GDFN G+ ++ + ++ E
Sbjct: 150 LFKGQVNRLMERVD----SNELSFLMGDFNNNARLQGEGYEYMMQEGLYDTYELAIEKDE 205
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
T + + D + L + S I S T R +S H + ++ D
Sbjct: 206 GTTV--QGEIAGWDENKHNLRIDLILCNRSEKIRSSKVVFNGTNRKIISDHFGVEVQVD 262
>gi|60683576|ref|YP_213720.1| hypothetical protein BF4154 [Bacteroides fragilis NCTC 9343]
gi|60495010|emb|CAH09828.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
Length = 608
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 29/102 (28%), Gaps = 21/102 (20%)
Query: 21 IPFVIAGDFNRKINSIGDTDD--FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
PF +AGDFN +S D +Q + +S +
Sbjct: 164 KPFFLAGDFNSDADSGFIKDLKSTFQILSNPKQ---------------PTYPASEPKETL 208
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
D +F + S D S H PL +E
Sbjct: 209 DYLIALKQETPTFVVNSARVIDEPL----ASDHRPLLVEVRM 246
>gi|68476691|ref|XP_717638.1| potential mRNA deadenylase and CCR4-NOT complex subunit Ccr4p
[Candida albicans SC5314]
gi|68476838|ref|XP_717564.1| potential mRNA deadenylase and CCR4-NOT complex subunit Ccr4p
[Candida albicans SC5314]
gi|74586169|sp|Q5A761|CCR4_CANAL RecName: Full=Glucose-repressible alcohol dehydrogenase
transcriptional effector; AltName: Full=Carbon
catabolite repressor protein 4; AltName:
Full=Cytoplasmic deadenylase
gi|46439279|gb|EAK98599.1| potential mRNA deadenylase and CCR4-NOT complex subunit Ccr4p
[Candida albicans SC5314]
gi|46439356|gb|EAK98675.1| potential mRNA deadenylase and CCR4-NOT complex subunit Ccr4p
[Candida albicans SC5314]
Length = 787
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 30/128 (23%), Gaps = 24/128 (18%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL----IRFPQEKESTCNVIKRNKSSLD 74
V+ GDFN F ++ + K +
Sbjct: 655 KNSSIVVCGDFNSV-KDSAVYQLFSTGASKGHEDMNGRDYGKFTEDGFHHPFKLKSAYEA 713
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------------------SKLSTHCPLT 115
+ N ++ + Y L + + S H P+
Sbjct: 714 VGELPFTNLTPAFTDNIDYIWYSTPTLQVKGLLGRVDEEYTSHSIGFPDANFPSDHVPIL 773
Query: 116 IEYDFEKG 123
++ +KG
Sbjct: 774 AKFQLKKG 781
>gi|332240176|ref|XP_003269266.1| PREDICTED: deoxyribonuclease-1-like [Nomascus leucogenys]
Length = 281
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 14/116 (12%), Positives = 39/116 (33%), Gaps = 5/116 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D + K G ++ GDFN + + + ++ + T
Sbjct: 164 EIDALYDVYLDVQEKWGLEDIMLMGDFNAGCSYVRPSQWSSIRLRTSPTFQWLIPDTADT 223
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTI 116
+ + V + ++ +S ++ + + +S H P+ +
Sbjct: 224 TA-TSTHCAYDRIVVAGMLLQGAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEV 278
>gi|242036853|ref|XP_002465821.1| hypothetical protein SORBIDRAFT_01g046420 [Sorghum bicolor]
gi|241919675|gb|EER92819.1| hypothetical protein SORBIDRAFT_01g046420 [Sorghum bicolor]
Length = 579
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 15/133 (11%), Positives = 31/133 (23%), Gaps = 22/133 (16%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIR---------FPQEK 59
+ I + GD N ++ W+ + L E
Sbjct: 407 ETILEHDRIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQLRIEQRGGRVFVGWSEG 466
Query: 60 ESTCNVIKRNKSSLD-------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ ++ D R + + Q S+ S H
Sbjct: 467 NIYFPPTYKYSNNSDKYAGDDMNQKEKRRTPAWCDRILWYGRGLGQLSYVRGESRFSDHR 526
Query: 113 PLTIEYDFEKGNV 125
P+ + E ++
Sbjct: 527 PVYSVFSAEVESI 539
>gi|229823953|ref|ZP_04450022.1| hypothetical protein GCWU000282_01257 [Catonella morbi ATCC 51271]
gi|229786307|gb|EEP22421.1| hypothetical protein GCWU000282_01257 [Catonella morbi ATCC 51271]
Length = 278
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 28/94 (29%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
+P ++ GDFN + D D +++ +++ + V
Sbjct: 176 AELPLILMGDFNNPAGKRQEGYDLIAASDLKLQDAFLVAKEKEGEFTVEKAIDGWEGNVD 235
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ F + SY R +S H
Sbjct: 236 QLRIDLAFLSQDFVVDSYRVVLDGQRGPVVSDHF 269
>gi|170734592|ref|YP_001773706.1| endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
MC0-3]
gi|169820630|gb|ACA95211.1| Endonuclease/exonuclease/phosphatase [Burkholderia cenocepacia
MC0-3]
Length = 258
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 20/117 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + +++ +P ++ GD N + F + L+ RF +
Sbjct: 151 ERSAQ-VQRLLAAFDTGAMPVILLGDIN---------EWFVRGRALQALVTRFRRAPAPR 200
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I +V R S H PL
Sbjct: 201 TFPT---------VCPVFSLDRIWIHPGELLVDVVVHRSARARH-ASDHYPLVARMR 247
>gi|52144875|ref|YP_081954.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus E33L]
gi|51978344|gb|AAU19894.1| possible endonuclease/exonuclease/phosphatase family protein
[Bacillus cereus E33L]
Length = 263
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 6/118 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q L + D + + GDFN G+ ++ + ++ E
Sbjct: 151 FKDQVNRLMERVD----SNELSFLMGDFNNNARLQGEGYEYMMQEGLYDTYELAIEKDEG 206
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
T + + D + L + S + S T R+ +S H + ++ D
Sbjct: 207 TTV--QGEIAGWDENKHNLRIDLILCNRSEKVRSSKVIFNGTNRNIISDHFGVEVQVD 262
>gi|37676369|ref|NP_936765.1| hypothetical protein VVA0709 [Vibrio vulnificus YJ016]
gi|37200911|dbj|BAC96735.1| hypothetical protein [Vibrio vulnificus YJ016]
Length = 322
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 37/131 (28%), Gaps = 17/131 (12%)
Query: 5 QGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ L ++ + + P VI GDFN INS + + L +E
Sbjct: 189 EAVLLSQYIKKIYASHARPMVIMGDFNANINSTELK-PLIDESNTPLLKDVRDWLREQPI 247
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD---------------QSDLDTRRSKL 108
+ K++ + L+ F+ + +
Sbjct: 248 FTDEAQKATHYHGSQGLILDYLLLSEEFAQQNAQQRGKITHLVVWDKHLVNPSFEVDQFA 307
Query: 109 STHCPLTIEYD 119
S H + + D
Sbjct: 308 SDHAFVAVTID 318
>gi|281201887|gb|EFA76095.1| hypothetical protein PPL_10674 [Polysphondylium pallidum PN500]
Length = 1369
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 23/95 (24%), Gaps = 14/95 (14%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ GDFN + D LI S+ + LD
Sbjct: 403 ICTGDFNCIPGDSSPLSTILDFLSDDHDLIDLDSTNNSSTWKRGDTEKRLDRIYCKFTI- 461
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S+ LS H P+T
Sbjct: 462 -------------ETSNFQLHPRALSDHSPITTNI 483
>gi|242070991|ref|XP_002450772.1| hypothetical protein SORBIDRAFT_05g017482 [Sorghum bicolor]
gi|241936615|gb|EES09760.1| hypothetical protein SORBIDRAFT_05g017482 [Sorghum bicolor]
Length = 354
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 39/117 (33%), Gaps = 3/117 (2%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRK--INSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++ E+L + T +P ++ GDFN I + Q M + E
Sbjct: 81 DRKLEFLDEIQSLVQSTDLPVLLGGDFNLVQKIEEKSSGNVDLQMM-DAFNEMINITELR 139
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
R S + ++ ++ Y+ + + T S H PL ++
Sbjct: 140 EVTRTGSRYTWSNKQKPPIMCVLDSVLVSNSWEDKYNLTSVLTAPRLGSDHNPLIVD 196
>gi|224102085|ref|XP_002312540.1| predicted protein [Populus trichocarpa]
gi|222852360|gb|EEE89907.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 8/72 (11%), Positives = 15/72 (20%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + R + R + + QS
Sbjct: 373 RVFRGWSEGKIYFPPTYKYSTNSDRYAGDDMHPKEKRRTPAWCDRILWHGEGLQQSSYVR 432
Query: 104 RRSKLSTHCPLT 115
S+ S H P+
Sbjct: 433 GESRFSDHRPVY 444
>gi|222612847|gb|EEE50979.1| hypothetical protein OsJ_31563 [Oryza sativa Japonica Group]
Length = 595
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 28/133 (21%), Gaps = 22/133 (16%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDP----------------DGLL 52
+ I + GD N ++ W+ +
Sbjct: 422 ETILEHDRIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQLRSEQRGGRVFPGWNEG 481
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ N R R + + Q S+ S H
Sbjct: 482 RIYFPPTYKYSNNSDRYAGDDMNQKEKRRTPAWCDRILWYGRGLSQLSYVRGESRFSDHR 541
Query: 113 PLTIEYDFEKGNV 125
P+ + E ++
Sbjct: 542 PVYSMFSAEVESI 554
>gi|269866283|ref|XP_002652219.1| exodeoxyribonuclease III [Enterocytozoon bieneusi H348]
gi|220062934|gb|EED41837.1| exodeoxyribonuclease III [Enterocytozoon bieneusi H348]
Length = 239
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 13/96 (13%), Positives = 22/96 (22%), Gaps = 5/96 (5%)
Query: 28 DFNRKINSIGDTDDFWQKM-DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFL 86
D M +E + + D
Sbjct: 120 DLYDHFMEKRQRQWLANLMKTFVDTFRIGNKELFQYTCWDRVLRHRESNLGTRIDYILLK 179
Query: 87 IDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + I S + S HCP+T+E D +
Sbjct: 180 TTSHYKIKSAEI----RPDIYGSNHCPVTLEIDIGE 211
>gi|163790442|ref|ZP_02184873.1| hypothetical protein CAT7_03019 [Carnobacterium sp. AT7]
gi|159874346|gb|EDP68419.1| hypothetical protein CAT7_03019 [Carnobacterium sp. AT7]
Length = 271
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 3/98 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P + GDFN N + ++ + + ++ T +
Sbjct: 175 EPIFLLGDFN---NPAHIKQEGYELVTQNWFDTYHLAAQKDTGFTVADAIDGWSENQSGL 231
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ +S D +S H + +E
Sbjct: 232 RIDYIFANQPVKTISSQVIFNDNNEPIISDHFGIVVEI 269
>gi|326664781|ref|XP_003197884.1| PREDICTED: transposon TX1 uncharacterized 149 kDa protein-like
[Danio rerio]
Length = 1143
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 17/136 (12%), Positives = 26/136 (19%), Gaps = 28/136 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF---------------WQKMD 47
+ L + + P V AGDFN + S +
Sbjct: 117 KHERHELLEDLQPHMLGKAPLVFAGDFNCVLTSKDRKGKTDDFRVDKTSVLLQGIAKDFK 176
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK 107
Q +E + SD
Sbjct: 177 LVDCFKTLHQREEGFTWFSSDCTR-------ASRIDYIFARDII------PSDARLTPVF 223
Query: 108 LSTHCPLTIEYDFEKG 123
S H L+ + G
Sbjct: 224 FSDHHMLSCTFSLPPG 239
>gi|297539130|ref|YP_003674899.1| Endonuclease/exonuclease/phosphatase [Methylotenera sp. 301]
gi|297258477|gb|ADI30322.1| Endonuclease/exonuclease/phosphatase [Methylotenera sp. 301]
Length = 250
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 14/116 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ + ++ +Q I P +IAGDFN G F ++++ + + +
Sbjct: 146 RQQLVSVSEYIEQHIPANAPLIIAGDFNDWGMRTG--RIFAERLNMHEVFEHHAGKPAKS 203
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+V + K+ + + + K+S H LT
Sbjct: 204 FPAWLPMLRLDRIYVRGFNVKHVEVHSGAHFL------------KVSDHAILTATL 247
>gi|291326722|ref|ZP_06125600.2| endonuclease/exonuclease/phosphatase family protein [Providencia
rettgeri DSM 1131]
gi|291313357|gb|EFE53810.1| endonuclease/exonuclease/phosphatase family protein [Providencia
rettgeri DSM 1131]
Length = 242
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 33/119 (27%), Gaps = 24/119 (20%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L + + P ++AGDFN + + + GL +
Sbjct: 148 RQLSKLGVHIAKHVG---PVILAGDFNAWSRQRV--NALKRFIRSVGLKEIVFSD----- 197
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
R K+ + D++ S H P+ ++ K
Sbjct: 198 --DYRTKAFGRPLDYVFYRGLNVKDSTVLPTDA------------SDHNPIMTKFTLSK 242
>gi|289621778|emb|CBI51689.1| putative PI phosphatase group protein [Sordaria macrospora]
Length = 1215
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 21/83 (25%), Gaps = 7/83 (8%)
Query: 39 TDDFWQKMDPDGLLIRFPQEKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ D L I F + + +
Sbjct: 1069 RNPGFRLRAFDELPITFAPTYKYDVGTDNYDSSEKKRSPAWCDRLLYRGRG------RIE 1122
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
Q D ++S H P++ + F
Sbjct: 1123 QLDYKRHEVRVSDHRPVSGRFRF 1145
>gi|118476126|ref|YP_893277.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
thuringiensis str. Al Hakam]
gi|118415351|gb|ABK83770.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
thuringiensis str. Al Hakam]
Length = 267
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 6/118 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q L + D + + GDFN G+ ++ + ++ E
Sbjct: 155 FKDQVNRLMERVD----SNELSFLMGDFNNNARLQGEGYEYMMQEGLYDTYELAIEKDEG 210
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
T + + D + L + S I S T R +S H + ++ D
Sbjct: 211 TTV--QGEIAGWDENKHNLRIDLILCNRSEKIRSSKVVFNGTNRKVISDHFGVEVQVD 266
>gi|86357472|ref|YP_469364.1| hypothetical protein RHE_CH01845 [Rhizobium etli CFN 42]
gi|86281574|gb|ABC90637.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 209
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 9/46 (19%), Positives = 13/46 (28%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP 48
QQ L + V+ GDFN +S +
Sbjct: 134 QQQALALAGLIGRIWPGDEGLVVCGDFNVLPDSATFRVLARLGLSD 179
>gi|321461854|gb|EFX72882.1| hypothetical protein DAPPUDRAFT_253862 [Daphnia pulex]
Length = 302
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 30/108 (27%), Gaps = 7/108 (6%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN-KS 71
+ + P+++ GDFN + + + C + N +
Sbjct: 70 IEAMLDRSNPYLLGGDFN---GHHPLWESNATVNKAGKSVYEALINDQDACLITPPNLGT 126
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
LD + I + S + S H P+ I +
Sbjct: 127 PLDPVSGKASTIDLTITAASIATSAKITLGPYMG---SDHLPIIITLN 171
>gi|296444974|ref|ZP_06886936.1| Endonuclease/exonuclease/phosphatase [Methylosinus trichosporium
OB3b]
gi|296257642|gb|EFH04707.1| Endonuclease/exonuclease/phosphatase [Methylosinus trichosporium
OB3b]
Length = 325
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 32/127 (25%), Gaps = 10/127 (7%)
Query: 3 SQQGEWL--KKWADQKIKTGIP--FVIAGDFNRKINSIGDTDDFWQKMDPD------GLL 52
++G+ L + + D + GDFN + + + L
Sbjct: 190 KREGQALETRLFVDALFDDDKDASIAVCGDFNSESHDAPARILRGAAEEDAEAPFALTAL 249
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
E + ++ LD+ ++ R S H
Sbjct: 250 AERLAESARYSVIHAGRRTLLDHILVSRALAARCARVEIMNEGLADEATAPDPILGSLHA 309
Query: 113 PLTIEYD 119
P+ +
Sbjct: 310 PIMASFR 316
>gi|302550957|ref|ZP_07303299.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
40736]
gi|302468575|gb|EFL31668.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
40736]
Length = 349
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 28/117 (23%), Gaps = 21/117 (17%)
Query: 3 SQQGEWLKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
++Q + + + I V+ GD N +N Q G
Sbjct: 245 ARQRDRSADFLGEAIAHEPLKNVVLLGDLNGTMNDRALNAVTSQMRSTQG----AAGNGF 300
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ +D ++ L S + S H P+
Sbjct: 301 GFSWPASFPMARIDQIMVKG-----LKPESSWTLP----------QTGSDHLPIAAR 342
>gi|156837188|ref|XP_001642626.1| hypothetical protein Kpol_312p7 [Vanderwaltozyma polyspora DSM
70294]
gi|156113177|gb|EDO14768.1| hypothetical protein Kpol_312p7 [Vanderwaltozyma polyspora DSM
70294]
Length = 942
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 30/123 (24%), Gaps = 20/123 (16%)
Query: 16 KIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIRFPQEKESTCNVIKRN 69
+IK + GDFN +++ + K+ L + S
Sbjct: 696 RIKDHDAIIWMGDFNYRILMSNEEVRKLITAKEFAKLFERDQLNQQMIAGASFPY-YHEM 754
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------------STHCPLTI 116
+ + + + +R L S H P+
Sbjct: 755 EIKFPPTYKFNPGTKVYDTSEKMRIPAWTDRILSRGEVLNQLSYGCAEDIIYSDHRPVYA 814
Query: 117 EYD 119
++
Sbjct: 815 TFN 817
>gi|42569545|ref|NP_180761.2| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
thaliana]
gi|110737635|dbj|BAF00758.1| putative inositol polyphosphate 5'-phosphatase [Arabidopsis
thaliana]
gi|330253527|gb|AEC08621.1| protein CVP2 like 1 [Arabidopsis thaliana]
gi|330253528|gb|AEC08622.1| protein CVP2 like 1 [Arabidopsis thaliana]
Length = 594
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 27/123 (21%), Gaps = 22/123 (17%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIR-------------- 54
+ I + GD N ++ W+ + + L
Sbjct: 429 ENILQHDRVIWLGDLNYRIALSYRSAKALVEMQNWRALLENDQLRIEQKRGHVFKGWNEG 488
Query: 55 --FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ N R + R + + Q S+ S H
Sbjct: 489 KIYFPPTYKYSNNSDRYAGGDLHPKEKRRTPAWCDRILWHGEGLHQLSYVRGESRFSDHR 548
Query: 113 PLT 115
P+
Sbjct: 549 PVY 551
>gi|47206818|emb|CAF91198.1| unnamed protein product [Tetraodon nigroviridis]
Length = 506
Score = 35.6 bits (80), Expect = 2.5, Method: Composition-based stats.
Identities = 7/70 (10%), Positives = 17/70 (24%), Gaps = 2/70 (2%)
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F + + D+ + + +D+ + S
Sbjct: 190 DTFRYFHPTRANAFTCWSTLTG-ARQTNYGTRIDYIFADHRLASEQFVAADIMP-EVEGS 247
Query: 110 THCPLTIEYD 119
HCP+ +
Sbjct: 248 DHCPVWGQLS 257
>gi|302682822|ref|XP_003031092.1| hypothetical protein SCHCODRAFT_235625 [Schizophyllum commune H4-8]
gi|300104784|gb|EFI96189.1| hypothetical protein SCHCODRAFT_235625 [Schizophyllum commune H4-8]
Length = 699
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 13/128 (10%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKI----NSIGDTDDFWQKMDPDGLLI-RFPQE 58
QQ L + + T P ++ GDFN T ++
Sbjct: 485 QQASHLLQSI--TLPTDHPVIVLGDFNLDHPLWSTEPSRTSPGADELVDWMTDKGFALLN 542
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS-KLSTHCPLTIE 117
K+ R S+ ++ + + R S H +T
Sbjct: 543 KKGAPTHFPRRTSAAPSV-----LDLTFVNGPAQQLDAAKEWALAPRYQYSSDHIGITFT 597
Query: 118 YDFEKGNV 125
D+ +
Sbjct: 598 LDYGATPI 605
>gi|237717287|ref|ZP_04547768.1| metallophosphoesterase [Bacteroides sp. D1]
gi|237719038|ref|ZP_04549519.1| metallophosphoesterase [Bacteroides sp. 2_2_4]
gi|262406053|ref|ZP_06082603.1| metallophosphoesterase [Bacteroides sp. 2_1_22]
gi|293371916|ref|ZP_06618320.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CMC 3f]
gi|294648117|ref|ZP_06725660.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CC 2a]
gi|294806860|ref|ZP_06765685.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
xylanisolvens SD CC 1b]
gi|298480123|ref|ZP_06998322.1| secreted protein [Bacteroides sp. D22]
gi|229443270|gb|EEO49061.1| metallophosphoesterase [Bacteroides sp. D1]
gi|229451816|gb|EEO57607.1| metallophosphoesterase [Bacteroides sp. 2_2_4]
gi|262356928|gb|EEZ06018.1| metallophosphoesterase [Bacteroides sp. 2_1_22]
gi|292633162|gb|EFF51739.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CMC 3f]
gi|292636501|gb|EFF54976.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
ovatus SD CC 2a]
gi|294445889|gb|EFG14531.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
xylanisolvens SD CC 1b]
gi|295085514|emb|CBK67037.1| Metal-dependent hydrolase [Bacteroides xylanisolvens XB1A]
gi|298273932|gb|EFI15494.1| secreted protein [Bacteroides sp. D22]
Length = 263
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 22/99 (22%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P ++ GDFN + S G+ F VI D
Sbjct: 178 PVILGGDFNARHYSEAIR----------GMDSWFAA-------SNDDFGMPAWKPVIKID 220
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ ++S T +S LS H P+ E ++
Sbjct: 221 YLFAYPQKGWRVIS-----TQTVQSLLSDHLPIITELEY 254
>gi|160884067|ref|ZP_02065070.1| hypothetical protein BACOVA_02043 [Bacteroides ovatus ATCC 8483]
gi|299144720|ref|ZP_07037788.1| putative secreted protein [Bacteroides sp. 3_1_23]
gi|156110409|gb|EDO12154.1| hypothetical protein BACOVA_02043 [Bacteroides ovatus ATCC 8483]
gi|298515211|gb|EFI39092.1| putative secreted protein [Bacteroides sp. 3_1_23]
Length = 260
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 22/99 (22%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P ++ GDFN + S G+ F VI D
Sbjct: 175 PVILGGDFNARHYSEAIR----------GMDSWFAA-------SNDDFGMPAWKPVIKID 217
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ ++S T +S LS H P+ E ++
Sbjct: 218 YLFAYPQKGWRVIS-----TQTVQSLLSDHLPIITELEY 251
>gi|327405878|ref|YP_004346716.1| Endonuclease/exonuclease/phosphatase [Fluviicola taffensis DSM
16823]
gi|327321386|gb|AEA45878.1| Endonuclease/exonuclease/phosphatase [Fluviicola taffensis DSM
16823]
Length = 323
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 16/151 (10%), Positives = 39/151 (25%), Gaps = 30/151 (19%)
Query: 3 SQQGEW--LKKWADQKI--KTGIPFVIAGDFNRKINSIGDTDDFW------QKMDPDGLL 52
++ L++ D+ + + ++ GDFN ++ Q L
Sbjct: 172 RRKAAAMTLRREIDELLNAEKNANILVMGDFNDTPDNYSIKTILRAKGQHEQTKGDLINL 231
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-------DLDTRR 105
+ + V +R D ++ + + +
Sbjct: 232 LIEEHKDGFGTTVHQREWDIFDQLIVSQGLLQGQSGLEVQGNNAHIAHRKELVFTFKDGG 291
Query: 106 SKL-------------STHCPLTIEYDFEKG 123
SK S H P+ + ++
Sbjct: 292 SKPSATYGGDTYHGGYSDHLPVFLNLKSKQS 322
>gi|326626617|gb|EGE32960.1| Protein YafD [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
Length = 266
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P +IAGDFN S + ++ L + +R ++
Sbjct: 176 DQIAHHSGPVIIAGDFNAW--SRPRMNVLYRFAREMSLRQVRFTD-------DQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 227 RPLDFVFYRGLNVNEASVLVT------------RASDHNPLLVEFS 260
>gi|297741547|emb|CBI32679.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 30/123 (24%), Gaps = 22/123 (17%)
Query: 19 TGIPFVIAGDFNRKINSI--GDTDDF----WQKMDPDGLLIR---------FPQEKESTC 63
+ GD N ++ S + WQ + L +E
Sbjct: 333 EHDKIIWLGDLNYRLASGCGDVYELLKRNNWQALLEKDQLKIEQRSGRVFKGWEEGRIYF 392
Query: 64 NVIKRNKSSLDY-------FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ ++ D+ R + + Q S+ S H P+
Sbjct: 393 APTYKYLANSDHYVVHTSKSKEKRRTPAWCDRILWKGEGLKQMWYLRGESRFSDHRPVYA 452
Query: 117 EYD 119
+
Sbjct: 453 MFS 455
>gi|221640330|ref|YP_002526592.1| hypothetical protein RSKD131_2231 [Rhodobacter sphaeroides KD131]
gi|221161111|gb|ACM02091.1| Hypothetical Protein RSKD131_2231 [Rhodobacter sphaeroides KD131]
Length = 309
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 27/120 (22%), Gaps = 5/120 (4%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L P ++ G N + + L +
Sbjct: 191 ARLLDGRL-PFPAPEGPVLLMGKANIDPLAGDGPRAAIAALLAHPALQDPAPRRPDGSRA 249
Query: 66 IKRNKSS----LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ L + + S + L ++ S H P+ +E D
Sbjct: 250 TADFRAEGGPALLRTDYILPARGLHVTASGVLWPPPGDPLADVAAQASRHRPVWVELDLP 309
>gi|147766078|emb|CAN76931.1| hypothetical protein VITISV_023947 [Vitis vinifera]
Length = 916
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 15/106 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ + GDFN ++ + + ++ D LI P + + RN
Sbjct: 50 DEPWCLGGDFNVTLSQRERSRQGSLNGAMRRFAQVVDDLDLIDLPLQGGAFSWSGGRNNQ 109
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ S+ S H P+ ++
Sbjct: 110 ------TWARLDRFLVTQSWLDFFRGV-VQCRLPXXTSDHFPILLK 148
>gi|308811921|ref|XP_003083268.1| Glucose-repressible alcohol dehydrogenase transcriptional effector
CCR4 and related proteins (ISS) [Ostreococcus tauri]
gi|116055147|emb|CAL57543.1| Glucose-repressible alcohol dehydrogenase transcriptional effector
CCR4 and related proteins (ISS) [Ostreococcus tauri]
Length = 666
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 16/71 (22%), Gaps = 3/71 (4%)
Query: 53 IRFPQEKESTCNVIK--RNKSSLDYFVIDRDNKNFLIDNSFSIVSYD-QSDLDTRRSKLS 109
+LDY + +S QS S
Sbjct: 595 RPLFSAGGFPEWTNYVGGFVGALDYVWCSSEAFRPRNFAPLPPMSAVLQSTALPNAVFPS 654
Query: 110 THCPLTIEYDF 120
H P+ ++ D
Sbjct: 655 DHIPVVVDVDL 665
>gi|115482074|ref|NP_001064630.1| Os10g0422500 [Oryza sativa Japonica Group]
gi|78708659|gb|ABB47634.1| Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative,
expressed [Oryza sativa Japonica Group]
gi|113639239|dbj|BAF26544.1| Os10g0422500 [Oryza sativa Japonica Group]
gi|218184543|gb|EEC66970.1| hypothetical protein OsI_33630 [Oryza sativa Indica Group]
Length = 590
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 14/133 (10%), Positives = 28/133 (21%), Gaps = 22/133 (16%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDP----------------DGLL 52
+ I + GD N ++ W+ +
Sbjct: 417 ETILEHDRIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQLRSEQRGGRVFPGWNEG 476
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ N R R + + Q S+ S H
Sbjct: 477 RIYFPPTYKYSNNSDRYAGDDMNQKEKRRTPAWCDRILWYGRGLSQLSYVRGESRFSDHR 536
Query: 113 PLTIEYDFEKGNV 125
P+ + E ++
Sbjct: 537 PVYSMFSAEVESI 549
>gi|332530427|ref|ZP_08406371.1| hypothetical protein HGR_10877 [Hylemonella gracilis ATCC 19624]
gi|332040139|gb|EGI76521.1| hypothetical protein HGR_10877 [Hylemonella gracilis ATCC 19624]
Length = 475
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
ML+ Q L++W D++ FV+ GDFNR + DP L ++
Sbjct: 280 MLA-QVPVLERWVDERAAAKEEFVVLGDFNRNLQGEDSKTARSDNTDPKTPLKCSFNARD 338
Query: 61 STCNVIK 67
Sbjct: 339 GKTECSS 345
>gi|329850732|ref|ZP_08265577.1| endonuclease/Exonuclease/phosphatase family protein [Asticcacaulis
biprosthecum C19]
gi|328841047|gb|EGF90618.1| endonuclease/Exonuclease/phosphatase family protein [Asticcacaulis
biprosthecum C19]
Length = 299
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 27/112 (24%), Gaps = 19/112 (16%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L++ A+ P V+AGDFN + + D
Sbjct: 207 LQQLAEVARLETKPVVLAGDFNTT-----LWSSNIRPLVKDR--------------WQWP 247
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ S Y + + S H P+ + +
Sbjct: 248 SGSGAAYTWPVGAAFLGIQIDHILTQKMRAGRFRVLEPIGSDHRPVRADLQY 299
>gi|325104253|ref|YP_004273907.1| Endonuclease/exonuclease/phosphatase [Pedobacter saltans DSM 12145]
gi|324973101|gb|ADY52085.1| Endonuclease/exonuclease/phosphatase [Pedobacter saltans DSM 12145]
Length = 276
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 19/147 (12%), Positives = 33/147 (22%), Gaps = 36/147 (24%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNR-KINSIGDTDD---FWQKMDPDGLLIRFPQEKE 60
+ E + + DQ + +I GDFN + K+ Q
Sbjct: 131 EMEAVIRHLDQ-LPKNSKTIIMGDFNSLSPQDSSYYNPNKQKLDKLIAHEATRAHIQNVN 189
Query: 61 STCN----------------VIKRNKSS----------LDYFVIDRDNKNFLIDNSFSIV 94
+ +NKS D +
Sbjct: 190 NGGFDYSVISQLINKGYTDAWKYKNKSRFEKSAPSPVVKHDPDNDVRIDYIWVSTPLKSK 249
Query: 95 S---YDQSDLDTRRSKLSTHCPLTIEY 118
+ + T +S H PL +
Sbjct: 250 IKSVFMIKNKHTD--IISDHYPLVLVL 274
>gi|281211453|gb|EFA85616.1| Pol [Polysphondylium pallidum PN500]
Length = 448
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 23/95 (24%), Gaps = 14/95 (14%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ GDFN + D LI S+ + LD
Sbjct: 345 ICTGDFNCIPGDSSPLSTILDFLSDDHDLIDLDSTNNSSTWKRGDTEKRLDRIYCKFTI- 403
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S+ LS H P+T
Sbjct: 404 -------------ETSNFQLHPRALSDHSPITTNI 425
>gi|281211112|gb|EFA85278.1| hypothetical protein PPL_02279 [Polysphondylium pallidum PN500]
Length = 1311
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 23/95 (24%), Gaps = 14/95 (14%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ GDFN + D LI S+ + LD
Sbjct: 345 ICTGDFNCIPGDSSPLSTILDFLSDDHDLIDLDSTNNSSTWKRGDTEKRLDRIYCKFTI- 403
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S+ LS H P+T
Sbjct: 404 -------------ETSNFQLHPRALSDHSPITTNI 425
>gi|46576009|gb|AAT01370.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
Japonica Group]
Length = 1614
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 15/107 (14%)
Query: 19 TGIPFVIAGDFNRKINSIGDTD--------DFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
P ++ GDFN + ++ D + K D L K+
Sbjct: 751 REHPVMLGGDFNLYKFASEKSNSNIDVRCMDMFNKFISDLDLREVHIIGPKFTWTNKQYC 810
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
++ + ++ + Y S + + S H PL ++
Sbjct: 811 P-------TQEVLDRILVSDDWDDRYPNSLISSVLRVGSDHTPLLLD 850
>gi|27366657|ref|NP_762184.1| hypothetical protein VV2_0202 [Vibrio vulnificus CMCP6]
gi|27358223|gb|AAO07174.1| hypothetical protein VV2_0202 [Vibrio vulnificus CMCP6]
Length = 322
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 17/131 (12%)
Query: 5 QGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ L ++ + + P VI GDFN INS F + + L +E
Sbjct: 189 EAVLLSQYIKKIYASHARPMVIMGDFNANINSTELK-PFVDESNTPLLKDVRDWLREQPI 247
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD---------------QSDLDTRRSKL 108
+ K++ + L+ F+ + +
Sbjct: 248 FTDEAQKATHYHGSQGLILDYLLLSEEFAQQNAQQRGKITHLVVWDKHLVNPSFEVDQFA 307
Query: 109 STHCPLTIEYD 119
S H + + D
Sbjct: 308 SDHAFVAVTID 318
>gi|326799489|ref|YP_004317308.1| endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
gi|326550253|gb|ADZ78638.1| Endonuclease/exonuclease/phosphatase [Sphingobacterium sp. 21]
Length = 351
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 18/105 (17%)
Query: 18 KTGIPFVIAGDFNR-KINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
++ P ++ GD N + + + F R
Sbjct: 234 RSSRPVIVIGDLNDVAWSYTTELFLKMSGLLDPRRGRGFY-NTFHAHYPFLRFP------ 286
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+D++F + +L + S H P+ I+ +E
Sbjct: 287 ----------LDHAFFSTDFKLRELKRLSNFNSDHFPIFIKIQYE 321
>gi|310794284|gb|EFQ29745.1| endonuclease/Exonuclease/phosphatase [Glomerella graminicola M1.001]
Length = 1184
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 9/83 (10%), Positives = 19/83 (22%), Gaps = 7/83 (8%)
Query: 39 TDDFWQKMDPDGLLIRFPQEKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ ++ + + I F +
Sbjct: 1047 RNPAFKLRAFEEMPITFAPTYKYDVGTDNYDTSEKKRAPAWCDRLVYRGGG------RIK 1100
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
Q D ++S H P+T + F
Sbjct: 1101 QIDYKRHEVRVSDHRPVTGRFKF 1123
>gi|205351589|ref|YP_002225390.1| hypothetical protein SG0256 [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205271370|emb|CAR36163.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
Length = 259
Score = 35.6 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P +IAGDFN S + ++ L + +R ++
Sbjct: 169 DQIAHHSGPVIIAGDFNAW--SRPRMNVLYRFAREMSLRQVRFTD-------DQRRRAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 220 RPLDFVFYRGLNVNEASVLVT------------RASDHNPLLVEFS 253
>gi|146181039|ref|XP_001022028.2| Endonuclease/Exonuclease/phosphatase family protein [Tetrahymena
thermophila]
gi|146144304|gb|EAS01783.2| Endonuclease/Exonuclease/phosphatase family protein [Tetrahymena
thermophila SB210]
Length = 449
Score = 35.6 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 4/59 (6%), Positives = 15/59 (25%), Gaps = 6/59 (10%)
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ R + + + ++ + S H P+ ++ +
Sbjct: 397 FIWYRFAEPSSQKHLKQILQQHDYQYVNKFKAF------PNQYHPSDHFPIVASFELNE 449
>gi|124485534|ref|YP_001030150.1| hypothetical protein Mlab_0711 [Methanocorpusculum labreanum Z]
gi|124363075|gb|ABN06883.1| Endonuclease/exonuclease/phosphatase [Methanocorpusculum labreanum
Z]
Length = 256
Score = 35.6 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 12/119 (10%), Positives = 28/119 (23%), Gaps = 10/119 (8%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L+ + ++ GD N + ++ + +
Sbjct: 139 LQMYEKLFTNKSENVLLCGDLNSFKKDK--YTSKTKNIETYFKKLYEMNIHSCYHYTYDK 196
Query: 69 -------NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYD 119
K+ + + +S D + +S H PL + D
Sbjct: 197 ELGDKEELKTFISPNGKRYHIDYIFTNMEYSGFFIDDFDNFKVSGKNISDHVPLGVNLD 255
>gi|104782141|ref|YP_608639.1| DNase [Pseudomonas entomophila L48]
gi|95111128|emb|CAK15848.1| putative DNase with DNase I-like domain [Pseudomonas entomophila
L48]
Length = 255
Score = 35.6 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 26/103 (25%), Gaps = 20/103 (19%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
P ++AGDFN LL F S +
Sbjct: 173 PPDEPVIVAGDFND-------WRLKADARLSGHLLEAFGTPPRSFP-----------ARL 214
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N+ + + S + LS H PL E
Sbjct: 215 PLLRLDRIYLRNACAEQARVLSRYPW--THLSDHAPLVAEVTL 255
>gi|4263717|gb|AAD15403.1| putative inositol polyphosphate 5'-phosphatase [Arabidopsis
thaliana]
Length = 501
Score = 35.6 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 26/123 (21%), Gaps = 22/123 (17%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIR-------------- 54
Q + GD N ++ W+ + + L
Sbjct: 336 QSSADENRVIWLGDLNYRIALSYRSAKALVEMQNWRALLENDQLRIEQKRGHVFKGWNEG 395
Query: 55 --FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ N R + R + + Q S+ S H
Sbjct: 396 KIYFPPTYKYSNNSDRYAGGDLHPKEKRRTPAWCDRILWHGEGLHQLSYVRGESRFSDHR 455
Query: 113 PLT 115
P+
Sbjct: 456 PVY 458
>gi|66802222|ref|XP_629893.1| hypothetical protein DDB_G0291964 [Dictyostelium discoideum AX4]
gi|60463320|gb|EAL61512.1| hypothetical protein DDB_G0291964 [Dictyostelium discoideum AX4]
Length = 1406
Score = 35.6 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 22/96 (22%), Gaps = 12/96 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN N DD Q Q + +
Sbjct: 287 IIAGDFNCIHNDNSLLDDIIQSY--TYQHHLIDQGEFKNTPTHTHGNILDRIYTQYNRID 344
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + LS H P++
Sbjct: 345 PENIYTQVHQIPSS----------LSDHNPISTTIS 370
>gi|294790312|ref|ZP_06755470.1| endonuclease/exonuclease/phosphatase family protein [Scardovia
inopinata F0304]
gi|294458209|gb|EFG26562.1| endonuclease/exonuclease/phosphatase family protein [Scardovia
inopinata F0304]
Length = 273
Score = 35.6 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 30/129 (23%), Gaps = 33/129 (25%)
Query: 24 VIAGDFNRKINSIGDTDD-------------FWQKMDPDGLLI------RFPQEKESTCN 64
+I GDFN S G + +M L S
Sbjct: 134 IIVGDFNDMPYSKGLLNADGFHGLPALKTTKKKTRMVSGTLYREYYNPMWNFFGDFSAPP 193
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSF--------------SIVSYDQSDLDTRRSKLST 110
+S Y + FL+ D +K+S
Sbjct: 194 GTYYYNNSKLYSPMWYILDQFLLSRELAPNLVIDQLKIITECSHGTLYDKNDRPNTKISD 253
Query: 111 HCPLTIEYD 119
H P+ E D
Sbjct: 254 HFPIMCEID 262
>gi|224023659|ref|ZP_03642025.1| hypothetical protein BACCOPRO_00371 [Bacteroides coprophilus DSM
18228]
gi|224016881|gb|EEF74893.1| hypothetical protein BACCOPRO_00371 [Bacteroides coprophilus DSM
18228]
Length = 637
Score = 35.6 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 11/101 (10%), Positives = 28/101 (27%), Gaps = 17/101 (16%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
PF++AGD+N S + ++ + +++ +
Sbjct: 179 NKPFLLAGDWNALPESQTIQEI-----------------RKDFTLLNNLKQATYPANKPE 221
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + S H P+ + F
Sbjct: 222 DVIDYIAVWKATGKSVVQKGGTVLPDTVSSDHRPVMAKVRF 262
>gi|167521495|ref|XP_001745086.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776700|gb|EDQ90319.1| predicted protein [Monosiga brevicollis MX1]
Length = 586
Score = 35.6 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 15/141 (10%), Positives = 35/141 (24%), Gaps = 27/141 (19%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKIN----------SIGDTDDFWQKMDPDGLLI 53
+ E L ++ + + V++GD N + G + + +L
Sbjct: 446 RLRECLNRFVFARHE-NPLLVVSGDLNAGPGMDFFERFYLMTSGLDALMGSPFNHNKMLQ 504
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRD----NKNFLIDNSFSIVS------------YD 97
DY + + + + +
Sbjct: 505 ALLIRSRFVSPASMYTAIFDDYVDGVPSKRVLIDHICVSRALFQTTRRAGVAHELFEQFS 564
Query: 98 QSDLDTRRSKLSTHCPLTIEY 118
+ L+ R S H P+ +
Sbjct: 565 DARLEGRARHPSDHRPIWADL 585
>gi|326532750|dbj|BAJ89220.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 258
Score = 35.6 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 7/67 (10%), Positives = 12/67 (17%)
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ R R + + Q S+
Sbjct: 150 WKEGRIYFPPTYKYSFNSDRYSGYGVRPKEKRRTPAWCDRILWHGTGLIQLSYVRGESRF 209
Query: 109 STHCPLT 115
S H P+
Sbjct: 210 SDHRPVY 216
>gi|307194526|gb|EFN76818.1| Synaptojanin-1 [Harpegnathos saltator]
Length = 1172
Score = 35.6 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 14/140 (10%), Positives = 30/140 (21%), Gaps = 32/140 (22%)
Query: 13 ADQKIKTGIPFVIAGDFNRKIN-SIGD---------------TDDFWQKMDPDGLLIRFP 56
+ + T GDFN +++ + D + D + F
Sbjct: 714 MGRTLNTHDYVFWCGDFNYRVDMDKDEMKELIKRNELDQILAYDQLRVQQDQGNVFKNFL 773
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--SDLDTRRSKL------ 108
+ + + D + + + Q
Sbjct: 774 EGPITFA-PTYKYDLFSDDYDTSEKCRQPAWTDRVLWKRRKQVPDIDSPTDWNPGRLVYY 832
Query: 109 -------STHCPLTIEYDFE 121
S H P+ D +
Sbjct: 833 GRAELKQSDHRPVIATIDID 852
>gi|281210184|gb|EFA84352.1| Pol [Polysphondylium pallidum PN500]
Length = 1311
Score = 35.6 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 23/95 (24%), Gaps = 14/95 (14%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ GDFN + D LI S+ + LD
Sbjct: 345 ICTGDFNCIPGDSSPLSTILDFLSDDHDLIDLDSTNNSSTWKRGDTEKRLDRIYCKFTI- 403
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S+ LS H P+T
Sbjct: 404 -------------ETSNFQLHPRALSDHSPITTNI 425
>gi|225452632|ref|XP_002276314.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 444
Score = 35.6 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 12/124 (9%), Positives = 26/124 (20%), Gaps = 24/124 (19%)
Query: 20 GIPFVIAGDFN------RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV-------- 65
GD N + W+ + L R ++
Sbjct: 265 HDRIFWLGDLNYRLCLEDNLARKLIKRQDWRALQEFDQLRREQEDGGVFQGWKEGNIEFA 324
Query: 66 ----------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + + + + + Q SK S H P++
Sbjct: 325 PTYKYSTSNCNRYSGGLPNRSGEKQRTPAWCDRILWYGKGVKQLTYFRSESKFSDHRPVS 384
Query: 116 IEYD 119
+
Sbjct: 385 ALFS 388
>gi|156362334|ref|XP_001625734.1| predicted protein [Nematostella vectensis]
gi|156212580|gb|EDO33634.1| predicted protein [Nematostella vectensis]
Length = 319
Score = 35.6 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 6/108 (5%)
Query: 15 QKIKTGIPFVIAGDFNRKIN-SIGDTDDFWQKMDPDGLLIRFPQEKESTCNV---IKRNK 70
+ + + GD N + L I E K
Sbjct: 188 KMLAGFADVCLMGDLNLEPKVDGDILLPL--PWFDAWLAILNHTESNGYTWNVGANPYAK 245
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
S +R ++ ++F++ S D + D + S H L E
Sbjct: 246 ISEPDVAENRFDRIICKLSNFAVKSVDILESDNSGAYFSDHFALHAEL 293
>gi|332830343|gb|EGK02971.1| hypothetical protein HMPREF9455_01221 [Dysgonomonas gadei ATCC
BAA-286]
Length = 330
Score = 35.2 bits (79), Expect = 2.7, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 34/135 (25%), Gaps = 32/135 (23%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQK--------MDPDGLLIRFPQEKESTCNVIK 67
+I+ +I GDFN N I ++ + + EK + K
Sbjct: 192 RIRKKANIIIMGDFNDYPNDISLSESLGAHSIKSPVTDKNLYNMFYHRLGEKNAGSYKYK 251
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT-----------RRSKL-------- 108
+ +D F+I + S K
Sbjct: 252 GKWNFIDQFIISGNLLKPSCKISIKDKDAHIYSASFLLHDDNTKSGGGGQKPLRTYSGFK 311
Query: 109 -----STHCPLTIEY 118
S H P+ ++
Sbjct: 312 YPGGYSDHLPIYMDL 326
>gi|281212697|gb|EFA86857.1| hypothetical protein PPL_00663 [Polysphondylium pallidum PN500]
Length = 473
Score = 35.2 bits (79), Expect = 2.7, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 23/95 (24%), Gaps = 14/95 (14%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ GDFN + D LI S+ + LD
Sbjct: 345 ICTGDFNCIPGDSSPLSTILDFLSDDHDLIDLDSTNNSSTWKRGDTEKRLDRIYCKFTI- 403
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S+ LS H P+T
Sbjct: 404 -------------ETSNFQLHPRALSDHSPITTNI 425
>gi|332322180|emb|CCA66188.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1381
Score = 35.2 bits (79), Expect = 2.7, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 21/115 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTD--------DFWQKMDPDGLLIRFPQEKESTCNVIKR 68
++ P ++ GDFN ++ ++ L+ +
Sbjct: 130 AESQSPMLMVGDFNEVLDPSDRGSGISSQLGVLDFKNFIQQTHLMEISASDGWFTWFSGQ 189
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI---EYDF 120
KS LD +++ + + SI+ + LS HCPL + E ++
Sbjct: 190 AKSKLDRLLVNPEWVSLFPSLQVSILRRN----------LSDHCPLLVKSDELNW 234
>gi|297848430|ref|XP_002892096.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297337938|gb|EFH68355.1| endonuclease/exonuclease/phosphatase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 484
Score = 35.2 bits (79), Expect = 2.7, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 21/66 (31%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E+L+ + + +P ++ GD+N Q + ++ V
Sbjct: 239 EYLEAFQKENKLNHMPIILCGDWNGSKRGHVYKFLRSQGFISSYDDAHQYTDSDAHRWVS 298
Query: 67 KRNKSS 72
RN
Sbjct: 299 HRNHRG 304
>gi|119482522|ref|XP_001261289.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Neosartorya fischeri NRRL 181]
gi|119409444|gb|EAW19392.1| SacI domain and endonuclease/exonuclease/phosphatase family protein
[Neosartorya fischeri NRRL 181]
Length = 1161
Score = 35.2 bits (79), Expect = 2.7, Method: Composition-based stats.
Identities = 14/125 (11%), Positives = 33/125 (26%), Gaps = 17/125 (13%)
Query: 14 DQKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIRFPQEKESTCNVI- 66
++ I + GDFN +++ D +QK+ + L
Sbjct: 773 NRTIDDHDTIIWLGDFNYRIGLSNQTVRDLATQRNYQKLHDNDQLNLQMMAGNVFQFYSE 832
Query: 67 ----------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
++ + + + Q D+ + S H P+
Sbjct: 833 GLITFPPTYKYDVGTNYYDTSEKSRIPAWCDRILWKGSNIHQLHYDSACLQCSDHRPVWA 892
Query: 117 EYDFE 121
+ +
Sbjct: 893 LFSCD 897
>gi|327314063|ref|YP_004329500.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
denticola F0289]
gi|326945779|gb|AEA21664.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
denticola F0289]
Length = 347
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 16/146 (10%), Positives = 40/146 (27%), Gaps = 32/146 (21%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ--KMDPDGLLIRFPQ---- 57
+Q + LK + + ++ GD N + + ++ G +
Sbjct: 199 RQVKALKDSLL-RDDPKVKVLVMGDMNDDPTNKSIRECLSAKAEISEVGPDDMYNPWYNV 257
Query: 58 --EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
++ + + + D ++ N FS + + +S + R
Sbjct: 258 LVKEGTGTLQYQGKWNLFDQILMSPGLLNKENRKDFSELRFWKSQIFRRDYLFQETGKYK 317
Query: 109 ----------------STHCPLTIEY 118
S H P+ +
Sbjct: 318 GNTKRTTAGGVWLDGYSDHLPVVAYF 343
>gi|325856384|ref|ZP_08172100.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
denticola CRIS 18C-A]
gi|325483568|gb|EGC86540.1| endonuclease/exonuclease/phosphatase family protein [Prevotella
denticola CRIS 18C-A]
Length = 347
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 16/146 (10%), Positives = 40/146 (27%), Gaps = 32/146 (21%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ--KMDPDGLLIRFPQ---- 57
+Q + LK + + ++ GD N + + ++ G +
Sbjct: 199 RQVKALKDSLL-RDDPKVKVLVMGDMNDDPTNKSIRECLSAKAEISEVGPDDMYNPWYNV 257
Query: 58 --EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL------- 108
++ + + + D ++ N FS + + +S + R
Sbjct: 258 LVKEGTGTLQYQGKWNLFDQILMSPGLLNKENRKDFSELRFWKSQIFRRDYLFQETGKYK 317
Query: 109 ----------------STHCPLTIEY 118
S H P+ +
Sbjct: 318 GNTKRTTAGGVWLDGYSDHLPVVAYF 343
>gi|307180084|gb|EFN68152.1| Putative neutral sphingomyelinase [Camponotus floridanus]
Length = 360
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 29/128 (22%), Gaps = 10/128 (7%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC- 63
Q ++ ++AGD N + + D + C
Sbjct: 153 QAFDTAQFVRMTSGGADAVILAGDLNTEPQDLAYRIIRGVGGLMDACPSSASHIGTNECA 212
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--------SDLDTRRSKLSTHCPLT 115
N + + L S V + + + + S H +
Sbjct: 213 NNSYTCSKFARTRPDGKRIDHILYLGS-KSVKVEITNFQHPLPNRVPYKDFSYSDHEAVM 271
Query: 116 IEYDFEKG 123
F G
Sbjct: 272 ATLKFTNG 279
>gi|294506961|ref|YP_003571019.1| Endonuclease/exonuclease/phosphatase family [Salinibacter ruber M8]
gi|294343289|emb|CBH24067.1| Endonuclease/exonuclease/phosphatase family [Salinibacter ruber M8]
Length = 361
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 17/128 (13%)
Query: 5 QGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMDP------------DG 50
Q +L + ++AGD N +S P D
Sbjct: 232 QIRFLHAELSRLRDDRPAAKMLVAGDLNSLPDSPELRLLLNNPDRPAPDSVQPGRVPGDI 291
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
++ + + LDY + + + L+D S + +D S
Sbjct: 292 RFTDPLSDRPTPTHPADNPVRQLDYLLPNPALSDRLVDGSVRVARPLPADSMAA---TSD 348
Query: 111 HCPLTIEY 118
H P+ +
Sbjct: 349 HLPVAASF 356
>gi|291228330|ref|XP_002734137.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 435
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 11/130 (8%), Positives = 28/130 (21%), Gaps = 28/130 (21%)
Query: 19 TGIPFVIAGDFNRKINSIGD-----------------TDDFWQKMDPDGLLIRFPQEKES 61
+ GD N +I+ I D + + F + +
Sbjct: 179 NHDYVIWLGDLNYRISDISIEDVKDVLNRNELHILKFKDQLFLSQEACDAFHDFSEGDLN 238
Query: 62 TCNVI--------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD---QSDLDTRRSKLST 110
+ + V + + ++ + S
Sbjct: 239 FPPTYKLNPGTNEYNVSGKQRKPAWCDRILWKVNKDRIRHVDLNMELVTYNSIQKVQWSD 298
Query: 111 HCPLTIEYDF 120
H P+ ++
Sbjct: 299 HLPVYADFIL 308
>gi|281212696|gb|EFA86856.1| Pol [Polysphondylium pallidum PN500]
Length = 1198
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 23/95 (24%), Gaps = 14/95 (14%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ GDFN + D LI S+ + LD
Sbjct: 232 ICTGDFNCIPGDSSPLSTILDFLSDDHDLIDLDSTNNSSTWKRGDTEKRLDRIYCKFTI- 290
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S+ LS H P+T
Sbjct: 291 -------------ETSNFQLHPRALSDHSPITTNI 312
>gi|296085229|emb|CBI28724.3| unnamed protein product [Vitis vinifera]
Length = 520
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 28/123 (22%), Gaps = 22/123 (17%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIR-------------- 54
Q I + GD N ++ W+ + + L
Sbjct: 354 QTILEHDRIIWLGDLNYRIALSYRSAKALVEMRNWRALLENDQLRIEQRRGRVFEGWNEG 413
Query: 55 --FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ N R + R + + +Q S+ S H
Sbjct: 414 KIYFPPTYKYSNNSDRYAGDDMHPKEKRRTPAWCDRILWYGRGLNQLSYVRGESRFSDHR 473
Query: 113 PLT 115
P+
Sbjct: 474 PVY 476
>gi|291515225|emb|CBK64435.1| Metal-dependent hydrolase [Alistipes shahii WAL 8301]
Length = 292
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 12/118 (10%), Positives = 23/118 (19%), Gaps = 10/118 (8%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ + + ++GD N D M E +
Sbjct: 185 AESARMMVARMKRIAGEKAAVFLSGDLNTTY-DNALLDPLKAWMQSARHAAPVTDELPTF 243
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + F + LS H P+ Y
Sbjct: 244 ---------NDFGKRSLWIDFIFARNARALAYRTLVDSGRYGVPFLSDHNPVYALYKL 292
>gi|222629449|gb|EEE61581.1| hypothetical protein OsJ_15963 [Oryza sativa Japonica Group]
Length = 1494
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 4/106 (3%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE----STCNVIKRNKS 71
++ P+++ GDFN + I E + V +
Sbjct: 371 RLNASDPWLMIGDFNEAMWQIEHRSRVKHSERQMRDFREVLVECDLQDIGFQGVPWTYDN 430
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + + + +DQ+++ + S H PL +E
Sbjct: 431 NQASPNNVKVRLDRAVASPVWRAMFDQANIMHLTTACSDHVPLLLE 476
>gi|328882060|emb|CCA55299.1| Endonuclease or exonuclease or phosphatase [Streptomyces venezuelae
ATCC 10712]
Length = 321
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 31/121 (25%), Gaps = 16/121 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST-- 62
Q + + D + G P ++AGDFN+ + G + +
Sbjct: 192 QVPKVAELVDAARQGGEPAILAGDFNQVPEHADMNALYNHGGGSAGRFQEVDENDKEQFK 251
Query: 63 ----CNVIKRNKSS--------LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
R +S D+ + + Q D +S
Sbjct: 252 GDGCPQTADRCRSGEPTASPTCSDHTKETSKIDYVFLSYEWFKT--VQGDALPCPPGMSD 309
Query: 111 H 111
H
Sbjct: 310 H 310
>gi|258653090|ref|YP_003202246.1| endonuclease/exonuclease/phosphatase [Nakamurella multipartita DSM
44233]
gi|258556315|gb|ACV79257.1| Endonuclease/exonuclease/phosphatase [Nakamurella multipartita DSM
44233]
Length = 312
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 14/104 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L++ AD G ++AGDFN + + D G + +
Sbjct: 199 LRRLADIMRTAGASTIVAGDFNATRDHLQFRDLLAAGYTDSGSDAGAGLLRTYPTDRFWG 258
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+D+ ++ D + T S H
Sbjct: 259 PLVGIDHVLVGADLVGVAVG--------------TVAQPGSDHR 288
>gi|218188643|gb|EEC71070.1| hypothetical protein OsI_02823 [Oryza sativa Indica Group]
Length = 903
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 25/122 (20%), Gaps = 16/122 (13%)
Query: 5 QGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMD--------------P 48
Q L K P +I GDFN S QK++
Sbjct: 353 QVRTLLDRVYALSKTWNDAPVIICGDFNSTPKSPLYNFMLEQKLNLSGLVKSNISGQQTS 412
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ S D+K + + S T
Sbjct: 413 TAQGLYTGPNTARFYPPFHTTNSKEGSISYPNDHKPQPEARNVTENSRLSGREPTLTDTA 472
Query: 109 ST 110
S
Sbjct: 473 SD 474
>gi|153009147|ref|YP_001370362.1| endonuclease/exonuclease/phosphatase [Ochrobactrum anthropi ATCC
49188]
gi|151561035|gb|ABS14533.1| Endonuclease/exonuclease/phosphatase [Ochrobactrum anthropi ATCC
49188]
Length = 369
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 22/82 (26%), Gaps = 7/82 (8%)
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS------ 99
MD L ++ C + S ++ N + +
Sbjct: 287 MDRWTLYHTRGPQERHLCQLDYIMASPSFAKKNEKAVPNIIRRGQPWRTIFPPDQQIERY 346
Query: 100 -DLDTRRSKLSTHCPLTIEYDF 120
R K S HCP+ + +
Sbjct: 347 PRTGWDRPKASDHCPVAVTLNM 368
>gi|315173255|gb|EFU17272.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1346]
Length = 351
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 229 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLA 288
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 289 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 345
Query: 116 IEYDFE 121
+E +
Sbjct: 346 MEVGLK 351
>gi|315168004|gb|EFU12021.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1341]
Length = 351
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 229 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWVPGEIDPADLPKHFSLA 288
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 289 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 345
Query: 116 IEYDFE 121
+E +
Sbjct: 346 MEVGLK 351
>gi|312904593|ref|ZP_07763751.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0635]
gi|310632106|gb|EFQ15389.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0635]
gi|315577355|gb|EFU89546.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0630]
Length = 351
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 229 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWVPGEIDPADLPKHFSLA 288
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 289 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 345
Query: 116 IEYDFE 121
+E +
Sbjct: 346 MEVGLK 351
>gi|307272049|ref|ZP_07553314.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0855]
gi|306511269|gb|EFM80274.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0855]
Length = 351
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 229 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLA 288
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 289 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 345
Query: 116 IEYDFE 121
+E +
Sbjct: 346 MEVGLK 351
>gi|307278924|ref|ZP_07559984.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0860]
gi|306504406|gb|EFM73616.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0860]
Length = 351
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 229 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWVPGEIDPADLPKHFSLA 288
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 289 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 345
Query: 116 IEYDFE 121
+E +
Sbjct: 346 MEVGLK 351
>gi|293382574|ref|ZP_06628508.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis R712]
gi|293387804|ref|ZP_06632346.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis S613]
gi|312906818|ref|ZP_07765815.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis DAPTO 512]
gi|312978927|ref|ZP_07790653.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis DAPTO 516]
gi|291080122|gb|EFE17486.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis R712]
gi|291082779|gb|EFE19742.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis S613]
gi|310627072|gb|EFQ10355.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis DAPTO 512]
gi|311288364|gb|EFQ66920.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis DAPTO 516]
Length = 351
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 229 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLA 288
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 289 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 345
Query: 116 IEYDFE 121
+E +
Sbjct: 346 MEVGLK 351
>gi|257415648|ref|ZP_05592642.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis
AR01/DG]
gi|257418618|ref|ZP_05595612.1| conserved hypothetical protein [Enterococcus faecalis T11]
gi|257157476|gb|EEU87436.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis
ARO1/DG]
gi|257160446|gb|EEU90406.1| conserved hypothetical protein [Enterococcus faecalis T11]
Length = 358
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 236 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWVPGEIDPADLPKHFSLA 295
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 296 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 352
Query: 116 IEYDFE 121
+E +
Sbjct: 353 MEVGLK 358
>gi|257089438|ref|ZP_05583799.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|256998250|gb|EEU84770.1| conserved hypothetical protein [Enterococcus faecalis CH188]
Length = 358
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 236 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWVPGEIDPADLPKHFSLA 295
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 296 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 352
Query: 116 IEYDFE 121
+E +
Sbjct: 353 MEVGLK 358
>gi|257083939|ref|ZP_05578300.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis Fly1]
gi|256991969|gb|EEU79271.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis Fly1]
Length = 358
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 236 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLA 295
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 296 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 352
Query: 116 IEYDFE 121
+E +
Sbjct: 353 MEVGLK 358
>gi|257081282|ref|ZP_05575643.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis E1Sol]
gi|256989312|gb|EEU76614.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis E1Sol]
Length = 358
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 236 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLA 295
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 296 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 352
Query: 116 IEYDFE 121
+E +
Sbjct: 353 MEVGLK 358
>gi|256962544|ref|ZP_05566715.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis
HIP11704]
gi|256953040|gb|EEU69672.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis
HIP11704]
Length = 358
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 236 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLA 295
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 296 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 352
Query: 116 IEYDFE 121
+E +
Sbjct: 353 MEVGLK 358
>gi|256960214|ref|ZP_05564385.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis Merz96]
gi|256950710|gb|EEU67342.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis Merz96]
Length = 358
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 236 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLA 295
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 296 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 352
Query: 116 IEYDFE 121
+E +
Sbjct: 353 MEVGLK 358
>gi|256852682|ref|ZP_05558053.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis T8]
gi|256712027|gb|EEU27064.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis T8]
Length = 358
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 236 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLA 295
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 296 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 352
Query: 116 IEYDFE 121
+E +
Sbjct: 353 MEVGLK 358
>gi|256617953|ref|ZP_05474799.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis ATCC
4200]
gi|256597480|gb|EEU16656.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis ATCC
4200]
Length = 358
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 236 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWVPGEIDPADLPKHFSLA 295
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 296 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 352
Query: 116 IEYDFE 121
+E +
Sbjct: 353 MEVGLK 358
>gi|255974098|ref|ZP_05424684.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis T2]
gi|255966970|gb|EET97592.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis T2]
Length = 358
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 236 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWVPGEIDPADLPKHFSLA 295
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 296 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 352
Query: 116 IEYDFE 121
+E +
Sbjct: 353 MEVGLK 358
>gi|300860043|ref|ZP_07106131.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TUSoD Ef11]
gi|300850861|gb|EFK78610.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TUSoD Ef11]
gi|315144321|gb|EFT88337.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX2141]
gi|315162905|gb|EFU06922.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0645]
Length = 351
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 229 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLA 288
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 289 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 345
Query: 116 IEYDFE 121
+E +
Sbjct: 346 MEVGLK 351
>gi|229546877|ref|ZP_04435602.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1322]
gi|307290008|ref|ZP_07569932.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0411]
gi|229308042|gb|EEN74029.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1322]
gi|306498850|gb|EFM68344.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0411]
gi|315029720|gb|EFT41652.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX4000]
Length = 351
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 229 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLA 288
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 289 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 345
Query: 116 IEYDFE 121
+E +
Sbjct: 346 MEVGLK 351
>gi|227517952|ref|ZP_03948001.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0104]
gi|227074606|gb|EEI12569.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0104]
Length = 351
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 229 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWVPGEIDPADLPKHFSLA 288
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 289 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 345
Query: 116 IEYDFE 121
+E +
Sbjct: 346 MEVGLK 351
>gi|29375609|ref|NP_814763.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis V583]
gi|227555138|ref|ZP_03985185.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis HH22]
gi|29343070|gb|AAO80833.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis V583]
gi|227175722|gb|EEI56694.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis HH22]
gi|315147980|gb|EFT91996.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX4244]
gi|315574226|gb|EFU86417.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0309B]
gi|315581618|gb|EFU93809.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0309A]
gi|327534616|gb|AEA93450.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis OG1RF]
Length = 351
Score = 35.2 bits (79), Expect = 2.8, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 229 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWVPGEIDPADLPKHFSLA 288
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 289 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 345
Query: 116 IEYDFE 121
+E +
Sbjct: 346 MEVGLK 351
>gi|328887220|emb|CCA60459.1| putative membrane protein [Streptomyces venezuelae ATCC 10712]
Length = 361
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 24/121 (19%), Gaps = 21/121 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L + + + ++ GDFN + G E
Sbjct: 251 DEAAGLLAGFL--RAERSPRVLVMGDFNGSTDDRGLRPLTAGMASAQST----SGEGFGL 304
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + T + S H P+ D
Sbjct: 305 TWP---------ASFPLVRIDQ------ILLKGARATGSWTLPATASDHLPVAARVDLGP 349
Query: 123 G 123
G
Sbjct: 350 G 350
>gi|294777430|ref|ZP_06742881.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
vulgatus PC510]
gi|294448498|gb|EFG17047.1| endonuclease/exonuclease/phosphatase family protein [Bacteroides
vulgatus PC510]
Length = 276
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 33/113 (29%), Gaps = 20/113 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E +K +A K PF +AGD N + S + K I +
Sbjct: 182 ELIKDFAAAHKK---PFFLAGDLNAEPES------AFIKYLQQDFQILSDVNQ------- 225
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ID F++ S + S H PL I +
Sbjct: 226 HTFPAPAPTETIDYITALKQNMKGFTVTSAQVVNEPV----ASDHRPLVIVLE 274
>gi|265752690|ref|ZP_06088259.1| metallophosphoesterase [Bacteroides sp. 3_1_33FAA]
gi|263235876|gb|EEZ21371.1| metallophosphoesterase [Bacteroides sp. 3_1_33FAA]
Length = 247
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 33/113 (29%), Gaps = 20/113 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E +K +A K PF +AGD N + S + K I +
Sbjct: 153 ELIKDFAAAHKK---PFFLAGDLNAEPES------AFIKYLQQDFQILSDVNQ------- 196
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ID F++ S + S H PL I +
Sbjct: 197 HTFPAPAPTETIDYITALKQNMKGFTVTSAQVVNEPV----ASDHRPLVIVLE 245
>gi|237709161|ref|ZP_04539642.1| metallophosphoesterase [Bacteroides sp. 9_1_42FAA]
gi|229456857|gb|EEO62578.1| metallophosphoesterase [Bacteroides sp. 9_1_42FAA]
Length = 276
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 33/113 (29%), Gaps = 20/113 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E +K +A K PF +AGD N + S + K I +
Sbjct: 182 ELIKDFAAAHKK---PFFLAGDLNAEPES------AFIKYLQQDFQILSDVNQ------- 225
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ID F++ S + S H PL I +
Sbjct: 226 HTFPAPAPTETIDYITALKQNMKGFTVTSAQVVNEPV----ASDHRPLVIVLE 274
>gi|149637217|ref|XP_001511095.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
Length = 639
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 35/138 (25%), Gaps = 22/138 (15%)
Query: 6 GEWLKK--WADQKIKTGIPFVIAGDFNRKINS------------IGDTDDFWQKMDPDGL 51
L + + G+P V GDFN ++ D +
Sbjct: 502 AVALSHIKYVTSDLYPGVPVVFCGDFNSTPSTGTYSFVNSGGIAEDHEDWASNGEEERCN 561
Query: 52 LIRFPQ-------EKESTCNVIKRNKSSLDYFVIDRDNKNF-LIDNSFSIVSYDQSDLDT 103
+ + + N + LDY ID D + +
Sbjct: 562 MALTHPFKLKSACGEPAYTNYVGGFHGCLDYVFIDSDALEVEQVIPLPTHEEVTTHQALP 621
Query: 104 RRSKLSTHCPLTIEYDFE 121
S S H L + ++
Sbjct: 622 SVSHPSDHIALICDLKWK 639
>gi|115438464|ref|NP_001043546.1| Os01g0610600 [Oryza sativa Japonica Group]
gi|53791480|dbj|BAD52532.1| endonuclease/exonuclease/phosphatase family protein-like [Oryza
sativa Japonica Group]
gi|113533077|dbj|BAF05460.1| Os01g0610600 [Oryza sativa Japonica Group]
Length = 903
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 25/122 (20%), Gaps = 16/122 (13%)
Query: 5 QGEWLKKWADQKIK--TGIPFVIAGDFNRKINSIGDTDDFWQKMD--------------P 48
Q L K P +I GDFN S QK++
Sbjct: 353 QVRTLLDRVYALSKTWNDAPVIICGDFNSTPKSPLYNFMLEQKLNLSGLVKSNISGQQTS 412
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL 108
+ S D+K + + S T
Sbjct: 413 TAQGLYTGPNTARFYPPFHTTNSKEGSISYPNDHKPQPEARNVTENSRLSGREPTLTDTA 472
Query: 109 ST 110
S
Sbjct: 473 SD 474
>gi|85375016|ref|YP_459078.1| hypothetical protein ELI_10945 [Erythrobacter litoralis HTCC2594]
gi|84788099|gb|ABC64281.1| hypothetical protein ELI_10945 [Erythrobacter litoralis HTCC2594]
Length = 333
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 13/95 (13%), Positives = 24/95 (25%), Gaps = 16/95 (16%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ GDFN S +++M G + + + LD+ +
Sbjct: 247 LAIGDFNDVPWSKTTEQ--FREMGNYGDPRAGRGTYPTFPSWAGKFGWPLDHIFVKGGLH 304
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S H PL +
Sbjct: 305 --------------VRNFAVLDDVGSDHRPLAADI 325
>gi|319891524|ref|YP_004148399.1| Beta-hemolysin [Staphylococcus pseudintermedius HKU10-03]
gi|317161220|gb|ADV04763.1| Beta-hemolysin [Staphylococcus pseudintermedius HKU10-03]
Length = 311
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 17/132 (12%), Positives = 39/132 (29%), Gaps = 17/132 (12%)
Query: 1 MLSQQGEWLKKWAD-QKIKTGIPFVIAGDFNRKINS-IGDTDDFWQKMDPDGLLIRFP-- 56
+ ++Q + + + + I I GD N N+ G+ D + ++ +
Sbjct: 178 IRAEQMKEISNFVKSKNIPKDEVVYIGGDMNVNKNAGNGEFQDMLKNLNVSDVTYTGHSS 237
Query: 57 -QEKESTCNVIKRNKS-----------SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR 104
+ +S + D+ + + + S + Y L
Sbjct: 238 TWDPQSNSIAKYNYPNSAPEYLDYIFVDKDHRQPGQLINEAVAEKSPTWDVYKFPYLYVY 297
Query: 105 RSKLSTHCPLTI 116
S H P+
Sbjct: 298 NDY-SDHYPVKA 308
>gi|289741285|gb|ADD19390.1| transcriptional effector CCR4-related protein [Glossina morsitans
morsitans]
Length = 352
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 7/120 (5%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE-------K 59
L +A + + +P ++AGDFN ++ Q+ + L +
Sbjct: 231 RALASFAIRSKHSRLPTILAGDFNFTPDTDAYKCLVTQRKFNEYLFQMESIDFGSDAVST 290
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
V ++ + S S H L I +
Sbjct: 291 FQDEWVTVDYILKSIAEDKEKSITIESTYKLPTAESCMNIGKIPNTFLGSDHFSLAISFS 350
>gi|225351648|ref|ZP_03742671.1| hypothetical protein BIFPSEUDO_03245 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157992|gb|EEG71275.1| hypothetical protein BIFPSEUDO_03245 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 338
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 17/107 (15%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
Q G +V+ GDFN + + G E + +D
Sbjct: 249 QHYDNGESYVLMGDFNSTWDHASFRYLLGDRFTDAGESA---GEGLHMTYPSVFPIAEID 305
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + D+ +L+T+R + S H L + +
Sbjct: 306 HIIYDKGVYAR--------------NLETKRIQGSDHKALLATLELQ 338
>gi|147854555|emb|CAN78577.1| hypothetical protein VITISV_020585 [Vitis vinifera]
Length = 1848
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 11/104 (10%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE------KESTCNVIKRNKSSL 73
P+ +AGDFN + S + +E S
Sbjct: 763 NGPWCVAGDFNAIL-SPEERSRGGSFNSDMRRFAEVIEELQLKDLTLFGGPFTW---SGG 818
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL++ + + S +S H P+ +E
Sbjct: 819 VNNQTMSRLDRFLVNEGWDC-RFSHSRQSVLPRPVSDHFPILLE 861
>gi|77464439|ref|YP_353943.1| hypothetical protein RSP_0860 [Rhodobacter sphaeroides 2.4.1]
gi|77388857|gb|ABA80042.1| hypothetical protein RSP_0860 [Rhodobacter sphaeroides 2.4.1]
Length = 309
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 12/120 (10%), Positives = 25/120 (20%), Gaps = 5/120 (4%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L P ++ G N + + L
Sbjct: 191 ARLLDGRL-PFPAPEGPVLLMGKANIDPLAGDGPRAAIAALLAHPALQDPAPRGPDGSRA 249
Query: 66 IKRNKSSLDY----FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ + + S + L ++ S H P+ +E D
Sbjct: 250 TADFRADDGPGLLRTDYILPARGLPVTASGVLWPPPGDPLAAVAAQASRHRPVWVELDLP 309
>gi|258516632|ref|YP_003192854.1| Endonuclease/exonuclease/phosphatase [Desulfotomaculum acetoxidans
DSM 771]
gi|257780337|gb|ACV64231.1| Endonuclease/exonuclease/phosphatase [Desulfotomaculum acetoxidans
DSM 771]
Length = 236
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 31/114 (27%), Gaps = 17/114 (14%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
S+Q + + K + + +P ++ GDFN N + + + +
Sbjct: 134 SRQ-KQVNKIIELLGEIQLPTILTGDFNTTPNDPVIEQ--LRACLERKSVSTESKNNDLK 190
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
R + + + T + S H PL
Sbjct: 191 TYPSDR---------PSEKLDYIFLSAHWKEIC-----QTTLPGQASDHLPLLA 230
>gi|254475984|ref|ZP_05089370.1| endonuclease/exonuclease/phosphatase family protein [Ruegeria sp.
R11]
gi|214030227|gb|EEB71062.1| endonuclease/exonuclease/phosphatase family protein [Ruegeria sp.
R11]
Length = 271
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 12/96 (12%), Positives = 30/96 (31%), Gaps = 14/96 (14%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
V+ GD N S + + + +E ++ ++ + LD+ + D
Sbjct: 186 VLVGDLNVGPTSDAYRILMRSGLVDPWVSLGQSEEGVTSSHLDDKR---LDHVLCTEDCI 242
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S H P+ +++
Sbjct: 243 SDDAQMWIDTTAVG-----------SDHMPVWLQFQ 267
>gi|159125949|gb|EDP51065.1| inositol polyphosphate phosphatase, putative [Aspergillus fumigatus
A1163]
Length = 1197
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 29/123 (23%), Gaps = 21/123 (17%)
Query: 19 TGIPFVIAGDFNRKINSIG-----------------DTDDFWQKMDPDGLLIRFPQEKES 61
++ GD N +I+SI + D + +
Sbjct: 1017 DHEICILNGDLNYRIDSIPRNVIIEDIRNNNLAKLLERDQLLASRRKNPGFRLRSFTEAP 1076
Query: 62 TCN-VIKRNKSSLDYFVIDRDNKNFLIDNSFSIV---SYDQSDLDTRRSKLSTHCPLTIE 117
+ D + ++ + Q D + S H P++
Sbjct: 1077 ITFAPTYKYDVGTDEYDSSEKKRSPAWCDRVLYRGLGRIKQLDYRRHEVRASDHRPVSAS 1136
Query: 118 YDF 120
+
Sbjct: 1137 FKL 1139
>gi|119499123|ref|XP_001266319.1| inositol polyphosphate phosphatase, putative [Neosartorya fischeri
NRRL 181]
gi|119414483|gb|EAW24422.1| inositol polyphosphate phosphatase, putative [Neosartorya fischeri
NRRL 181]
Length = 1197
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 29/123 (23%), Gaps = 21/123 (17%)
Query: 19 TGIPFVIAGDFNRKINSIG-----------------DTDDFWQKMDPDGLLIRFPQEKES 61
++ GD N +I+SI + D + +
Sbjct: 1017 DHEICILNGDLNYRIDSIPRNVIIEDIRNNNLSKLLERDQLLASRRKNPGFRLRSFTEAP 1076
Query: 62 TCN-VIKRNKSSLDYFVIDRDNKNFLIDNSFSIV---SYDQSDLDTRRSKLSTHCPLTIE 117
+ D + ++ + Q D + S H P++
Sbjct: 1077 ITFAPTYKYDVGTDEYDSSEKKRSPAWCDRVLYRGLGRIKQLDYRRHEVRASDHRPVSAS 1136
Query: 118 YDF 120
+
Sbjct: 1137 FKL 1139
>gi|70985244|ref|XP_748128.1| inositol polyphosphate phosphatase [Aspergillus fumigatus Af293]
gi|66845756|gb|EAL86090.1| inositol polyphosphate phosphatase, putative [Aspergillus fumigatus
Af293]
Length = 1197
Score = 35.2 bits (79), Expect = 2.9, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 29/123 (23%), Gaps = 21/123 (17%)
Query: 19 TGIPFVIAGDFNRKINSIG-----------------DTDDFWQKMDPDGLLIRFPQEKES 61
++ GD N +I+SI + D + +
Sbjct: 1017 DHEICILNGDLNYRIDSIPRNVIIEDIRNNNLAKLLERDQLLASRRKNPGFRLRSFTEAP 1076
Query: 62 TCN-VIKRNKSSLDYFVIDRDNKNFLIDNSFSIV---SYDQSDLDTRRSKLSTHCPLTIE 117
+ D + ++ + Q D + S H P++
Sbjct: 1077 ITFAPTYKYDVGTDEYDSSEKKRSPAWCDRVLYRGLGRIKQLDYRRHEVRASDHRPVSAS 1136
Query: 118 YDF 120
+
Sbjct: 1137 FKL 1139
>gi|315606008|ref|ZP_07881039.1| endonuclease/exonuclease/phosphatase [Actinomyces sp. oral taxon
180 str. F0310]
gi|315312290|gb|EFU60376.1| endonuclease/exonuclease/phosphatase [Actinomyces sp. oral taxon
180 str. F0310]
Length = 475
Score = 35.2 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 12/133 (9%), Positives = 24/133 (18%), Gaps = 26/133 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST-------------- 62
+ T FVI GD+N ++ ++ +
Sbjct: 281 LSTDANFVILGDYNSDPLDGDSYPGAIDQLLTSPRIVDTMPTSQGGPSEAKLQGGANLKH 340
Query: 63 -CNVIKRNKSSLDYFVIDR-DNKNFLIDNSFSIVSYDQSDLDTRRS----------KLST 110
+ D L + + S
Sbjct: 341 KTDPKYDTGDFNDDPRPGNLRIDYVLPNTGTQVDEAQVFWPTRDDELFRLTGLHPFPTSD 400
Query: 111 HCPLTIEYDFEKG 123
H + + F
Sbjct: 401 HRMVWTKLRFPAA 413
>gi|242047838|ref|XP_002461665.1| hypothetical protein SORBIDRAFT_02g006147 [Sorghum bicolor]
gi|241925042|gb|EER98186.1| hypothetical protein SORBIDRAFT_02g006147 [Sorghum bicolor]
Length = 772
Score = 35.2 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 35/116 (30%), Gaps = 15/116 (12%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNR--KINSIGDTDD------FWQKMDPDGLLIRFPQEKE 60
L + A+ K +P++I GDFN D + + L
Sbjct: 581 LVEIANTCSKETLPYIIGGDFNIMRCPEDKSSGDFDPKWPNLFNVIIESLDLKEITMVGR 640
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ L+ + I+ + + ++ + +S H PL +
Sbjct: 641 QYTWTGPGDNP------TFEKLDRVLVSIEWEIM-FPLTTVEPKDGNISDHTPLVL 689
>gi|241949399|ref|XP_002417422.1| CCR4-NOT complex subunit, putative; carbon catabolite repressor
protein 4, putative; cytoplasmic deadenylase, putative;
glucose-repressible alcohol dehydrogenase
transcriptional effector, putative [Candida dubliniensis
CD36]
gi|223640760|emb|CAX45074.1| CCR4-NOT complex subunit, putative [Candida dubliniensis CD36]
Length = 784
Score = 35.2 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 15/128 (11%), Positives = 30/128 (23%), Gaps = 24/128 (18%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLL----IRFPQEKESTCNVIKRNKSSLD 74
++ GDFN F +E + K +
Sbjct: 652 KNSSIIVCGDFNSV-KDSAVYQLFSTGASKGHEDMNGRDYGKFTEEGFHHPFKLKSAYET 710
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR-------------------SKLSTHCPLT 115
+ N ++ + Y L + + S H P+
Sbjct: 711 VGELPFTNLTPAFTDNIDYIWYSTPTLQVKGLLGRVDEEYTSHSIGFPDANFPSDHVPIL 770
Query: 116 IEYDFEKG 123
++ +KG
Sbjct: 771 AKFHLKKG 778
>gi|145594885|ref|YP_001159182.1| endonuclease/exonuclease/phosphatase [Salinispora tropica CNB-440]
gi|145304222|gb|ABP54804.1| Endonuclease/exonuclease/phosphatase [Salinispora tropica CNB-440]
Length = 259
Score = 35.2 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 32/113 (28%), Gaps = 22/113 (19%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L++ P ++ GD N + + L
Sbjct: 168 AHQLRQTVRALRALPAPRILLGDLNLPAG-------CARLLTGWHPL------GRRPTYP 214
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + LD+ + DR +++ L + +S H PL ++
Sbjct: 215 AGRPRIQLDHVLADRQDRHRLPPVTAVRTPLSV---------ISDHRPLVVDL 258
>gi|238063240|ref|ZP_04607949.1| endonuclease/exonuclease/phosphatase [Micromonospora sp. ATCC
39149]
gi|237885051|gb|EEP73879.1| endonuclease/exonuclease/phosphatase [Micromonospora sp. ATCC
39149]
Length = 331
Score = 35.2 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 12/100 (12%), Positives = 23/100 (23%), Gaps = 13/100 (13%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++AGDFN ++ + +
Sbjct: 245 ILAGDFNATLDHALLRELLATGYVDAAD---ATGAGLVGTW-----GPYDGDPIPPVTID 296
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ L+D ++ S R S H + E
Sbjct: 297 HVLVDRRIAVRSVSV-----RGVPGSDHRAVLAELRLPAA 331
>gi|196040092|ref|ZP_03107394.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus NVH0597-99]
gi|196028947|gb|EDX67552.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus NVH0597-99]
Length = 263
Score = 35.2 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 37/118 (31%), Gaps = 6/118 (5%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q L + D + + GDFN G+ ++ + ++ E
Sbjct: 151 FKDQVNRLMERVD----SNELSFLMGDFNNNARLQGEGYEYMMQEGLYDTYELAIEKDEG 206
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
T + + D + L + S I S T R +S H + ++ D
Sbjct: 207 TTV--QGEIAGWDENKHNLRIDLILCNRSEKIRSSKVVFNGTNRKIISDHFGVEVQVD 262
>gi|159185011|ref|NP_354980.2| hypothetical protein Atu2011 [Agrobacterium tumefaciens str. C58]
gi|159140285|gb|AAK87765.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 319
Score = 35.2 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 103 TRRSKLSTHCPLTIEYDF 120
R K S HCP+ + D
Sbjct: 301 WDRPKASDHCPVVMTLDL 318
>gi|331007424|ref|ZP_08330604.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC1989]
gi|330418762|gb|EGG93248.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC1989]
Length = 259
Score = 35.2 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 40/138 (28%), Gaps = 26/138 (18%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD------------- 49
+Q + L+ + + F+ G++ + ++ QK
Sbjct: 124 AQFFDDLQAHLTKISRKRRDFIFCGNWAVAPKNEDVSNPDQQKNQSGFLPEEKQWMSQLA 183
Query: 50 -----GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS-IVSYDQSDLDT 103
+ +K+ S ++ S V Y
Sbjct: 184 PIGYVDAFRQGNTDKDEYSWW----PSGEQGKGDAWRTDLQIVSASLKNQVEYAVIY--- 236
Query: 104 RRSKLSTHCPLTIEYDFE 121
++ + S+H + ++YDFE
Sbjct: 237 KKQQFSSHLAVIVDYDFE 254
>gi|262374125|ref|ZP_06067402.1| endonuclease/exonuclease/phosphatase [Acinetobacter junii SH205]
gi|262311136|gb|EEY92223.1| endonuclease/exonuclease/phosphatase [Acinetobacter junii SH205]
Length = 381
Score = 35.2 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 28/107 (26%), Gaps = 18/107 (16%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDT-DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
DQ ++ GD N S + + F N
Sbjct: 231 DQIKDLDQSCIVMGDLNDVAWSRTTRLFQRISGLLDPRVGRYFM------------NTFH 278
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
DY ++ + F++V D+ S H P+ +
Sbjct: 279 ADYPLLRWSLDHIFHSTDFALV-----DMKRLAHIGSDHFPIYVVLQ 320
>gi|255014286|ref|ZP_05286412.1| hypothetical protein B2_10271 [Bacteroides sp. 2_1_7]
Length = 268
Score = 35.2 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 15/127 (11%), Positives = 33/127 (25%), Gaps = 19/127 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKI--------NSIGDTDD--------FWQKMDPDGLLIRFP 56
Q +K G P + GDFN G + ++ +
Sbjct: 142 IQQVMKEGYPVFLTGDFNEPSFLDWTQRAADAGIHKIKVEWPATKAFSEIGMNDSYRTIH 201
Query: 57 QE---KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ ++ + + + +SF + + S H
Sbjct: 202 PDEVSTPGYTWTPVPSEQEILDRLDFVLYSGCKVTDSFITGESEATSDVVVSPYPSDHRM 261
Query: 114 LTIEYDF 120
+T ++F
Sbjct: 262 VTSCFNF 268
>gi|242238792|ref|YP_002986973.1| endonuclease/exonuclease/phosphatase [Dickeya dadantii Ech703]
gi|242130849|gb|ACS85151.1| Endonuclease/exonuclease/phosphatase [Dickeya dadantii Ech703]
Length = 287
Score = 35.2 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 6/98 (6%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK--SSLDYFVIDR 80
++ GD N +S + V S + ++
Sbjct: 193 MMLMGDLNCLPDSEEYSR--LIGPVSPAHGRLVRHRGLMDAWVAAGQPESSGSTHPNVNG 250
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ L+ + ++ S H PL +E
Sbjct: 251 RIDHCLLTPTLGAEVRRC--WADTDNQGSDHHPLWVEL 286
>gi|238893202|ref|YP_002917936.1| hypothetical protein KP1_1068 [Klebsiella pneumoniae NTUH-K2044]
gi|238545518|dbj|BAH61869.1| hypothetical protein KP1_1068 [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 268
Score = 35.2 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN +M+ R +E + +R ++
Sbjct: 179 DQIAHHSGPVIMAGDFNA---------WSRPRMNALYRFAREMSLREVRFSDDQRRRAFG 229
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D ++ S H PL +E+
Sbjct: 230 RPL------------DFVFYRGLSVHDASVLVTRASDHNPLLVEFS 263
>gi|291441787|ref|ZP_06581177.1| polynucleotide adenyltransferase [Streptomyces ghanaensis ATCC
14672]
gi|291344682|gb|EFE71638.1| polynucleotide adenyltransferase [Streptomyces ghanaensis ATCC
14672]
Length = 973
Score = 35.2 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 24/125 (19%), Gaps = 13/125 (10%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L + A+ ++ GDFN + + + T
Sbjct: 277 RRQAE-LGRLAEGLGGVDGDLILVGDFNDGGDEP------AAALGLRDAWTEVHGPGDRT 329
Query: 63 CNVIKRNK------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S T +S H +
Sbjct: 330 PTFDPGVNPLAAVSSLSGRASRLDRIFLRAGQLRAIGAFLRGDSPTTDGLYVSDHYGVAA 389
Query: 117 EYDFE 121
+
Sbjct: 390 DLQLS 394
>gi|285017645|ref|YP_003375356.1| hypothetical protein XALc_0850 [Xanthomonas albilineans GPE PC73]
gi|283472863|emb|CBA15368.1| conserved hypothetical protein [Xanthomonas albilineans]
Length = 255
Score = 35.2 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 12/109 (11%), Positives = 28/109 (25%), Gaps = 21/109 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + ++ GDFN + + + P R +
Sbjct: 161 AFIAELLADHPNAILMGDFNCVADRPEMQLLYQR-------TRLQPPACVVPTFPSWRPQ 213
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++D+ ++ + + S H LT E
Sbjct: 214 RAIDHILLSDSLRCNAHRAVPAAF--------------SDHLALTTEIQ 248
>gi|241766910|ref|ZP_04764717.1| Endonuclease/exonuclease/phosphatase [Acidovorax delafieldii 2AN]
gi|241362633|gb|EER58476.1| Endonuclease/exonuclease/phosphatase [Acidovorax delafieldii 2AN]
Length = 290
Score = 35.2 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 28/120 (23%), Gaps = 26/120 (21%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFW--------------QKMDPDGLLIRFPQEKE 60
Q V+ GDFN + + + D LL +
Sbjct: 180 QSKAHTPHAVLCGDFNFEPHEPEHAAICAPAGADDSEGAPLGMRLWDSWRLLHAAAPQPP 239
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV--SYDQSDLDTRRSKLSTHCPLTIEY 118
+ +R + +S + ++ S H P+ +
Sbjct: 240 TFRLYDRRYGP------EPGSCDFVFVSDSLKGRVQRFVVD----AATQASDHQPVAVSI 289
>gi|168053624|ref|XP_001779235.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669334|gb|EDQ55923.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 468
Score = 35.2 bits (79), Expect = 3.0, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 32/128 (25%), Gaps = 22/128 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDF------WQKMDPDGLLIRFPQEKESTCNVI 66
+ I + GD N +I+ W+ + L
Sbjct: 292 LPETILAHDRIIWLGDLNYRIDLPDMETWALVNQCDWKSLLARDQLKMERNAGRVFKGWH 351
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR----------------RSKLST 110
+ + + ++ + +++F R + LS
Sbjct: 352 EDVITFPPTYKFVVESDQYFGEDTFKGDKRRTPAWCDRILSYGQGLTQLSYSMIEAGLSD 411
Query: 111 HCPLTIEY 118
H P+ ++
Sbjct: 412 HRPVIAKF 419
>gi|307324753|ref|ZP_07603959.1| Endonuclease/exonuclease/phosphatase [Streptomyces violaceusniger
Tu 4113]
gi|306889635|gb|EFN20615.1| Endonuclease/exonuclease/phosphatase [Streptomyces violaceusniger
Tu 4113]
Length = 380
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 16/124 (12%), Positives = 29/124 (23%), Gaps = 10/124 (8%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKIN--SIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L + G ++ GD N + + D + D +
Sbjct: 179 VTQLSDYITAN-SAGNAVLVMGDTNTRYTRAADNIRDLATRNGLTDAWVDLVRGGSAPPA 237
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSF-------SIVSYDQSDLDTRRSKLSTHCPLTI 116
+ L + + S LD LS H P T+
Sbjct: 238 GSDALVCDPENVTDTCEVVDKVLYRSGPLLSLAATRYHNEHTSFLDAEGKPLSDHYPHTV 297
Query: 117 EYDF 120
+ +
Sbjct: 298 DLSW 301
>gi|290961878|ref|YP_003493060.1| hydrolase [Streptomyces scabiei 87.22]
gi|260651404|emb|CBG74526.1| putative hydrolase [Streptomyces scabiei 87.22]
Length = 489
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 24/121 (19%), Gaps = 17/121 (14%)
Query: 15 QKIKTGIPFVIAGDFNRK-INSIGDTDD------FWQKMDPDGLLIRFPQEKESTCNVIK 67
++I +P V+ GDFN D D + ++
Sbjct: 361 RRIDGSVPVVLVGDFNSPSHLDRPDVDWPVTLAAETAGLRDSYREAHPDPVRQPGHTWSP 420
Query: 68 RNKSSLDYFVIDRDNKNF----LIDNSFSIVSYDQSDLDT------RRSKLSTHCPLTIE 117
+ D + S S H +
Sbjct: 421 IHVEHEDGSGRPEPQDRIDFVLHRGLTVLDSRTCVSGTPRPWPDVEDNDWPSDHAAVITT 480
Query: 118 Y 118
+
Sbjct: 481 F 481
>gi|147768838|emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
Length = 3804
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 11/104 (10%)
Query: 20 GIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
P+ + GDFN + T + L +
Sbjct: 760 EDPWCLGGDFNSTLYQAERSRNGRITSAMRRFAQVIDELGLIDIPLQGGSFTWSGG---- 815
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ ++ I Y +++ +S H P+ +E
Sbjct: 816 LNNQSWARLDRFLVSPNW-IDQYSRANQRRLPRPISDHFPILLE 858
>gi|19527895|gb|AAL90062.1| AT13596p [Drosophila melanogaster]
Length = 603
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 13/126 (10%), Positives = 23/126 (18%), Gaps = 20/126 (15%)
Query: 18 KTGIPFVIAGDFNRKIN------------SIGDTDDFWQKMDPDGLLIRFPQ-----EKE 60
I + GDFN D +
Sbjct: 478 PKNIGLIFCGDFNSVPECGIYKLMTEQLAEKTLEDWQSNAEQAVSNVELAQPFKMGSAYG 537
Query: 61 STCNVIKR--NKSSLDYFVI-DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ LDY + + + + + S H L +
Sbjct: 538 APEYTHYTTLFAGCLDYVFYQNDRFELLKVVPLPTEEELKANTAIPSAVFPSDHVALVAD 597
Query: 118 YDFEKG 123
F+
Sbjct: 598 LKFKSD 603
>gi|118373801|ref|XP_001020093.1| Endonuclease/Exonuclease/phosphatase family protein [Tetrahymena
thermophila]
gi|89301860|gb|EAR99848.1| Endonuclease/Exonuclease/phosphatase family protein [Tetrahymena
thermophila SB210]
Length = 271
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 34/126 (26%), Gaps = 16/126 (12%)
Query: 5 QGEWLKKWAD---QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q E + + Q IP +IAGDFN + Q E +
Sbjct: 150 QVEQILEHIQKIQQDYSKDIPILIAGDFNAEPTYSCIQKIKQQGFLKSAY------EDKG 203
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDN----SFSIVSYDQSDLDTR--RSKLS-THCPL 114
+ + D + D + ++ S + S H L
Sbjct: 204 LTFTTYKVREPNDVQIRMIDYIFYTQNSIELLSIKNLPTQDQIGPNGLPNQTFSGDHLSL 263
Query: 115 TIEYDF 120
T + F
Sbjct: 264 TATFKF 269
>gi|323495481|ref|ZP_08100555.1| nuclease [Vibrio sinaloensis DSM 21326]
gi|323319362|gb|EGA72299.1| nuclease [Vibrio sinaloensis DSM 21326]
Length = 1007
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 13/82 (15%)
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------- 107
++ +LD+ + ++ ++ +S+L SK
Sbjct: 790 HGADTFSYTYSGELGNLDHALASSSLAQKVVAIEDWHINSLESNLFEYSSKYTGNMPKYT 849
Query: 108 ----LSTHCPLTIEYDFEKGNV 125
S H P+ I D ++
Sbjct: 850 DVYSASDHDPVLIAIDLPDTDI 871
>gi|297848820|ref|XP_002892291.1| type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Arabidopsis
lyrata subsp. lyrata]
gi|297338133|gb|EFH68550.1| type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Arabidopsis
lyrata subsp. lyrata]
Length = 550
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 26/123 (21%), Gaps = 22/123 (17%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIR-------------- 54
+ I + GD N ++ W+ + + L
Sbjct: 385 ENILQHDRVIWLGDLNYRIALSYRSAKALVEMQNWRALLENDQLRIEQKRGHVFKGWNEG 444
Query: 55 --FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ R + R + + Q S+ S H
Sbjct: 445 KIYFPPTYKYSRNSDRYSGDDLHPKEKRRTPAWCDRILWFGEGLHQLSYVRGESRFSDHR 504
Query: 113 PLT 115
P+
Sbjct: 505 PVY 507
>gi|239933421|ref|ZP_04690374.1| polynucleotide adenyltransferase [Streptomyces ghanaensis ATCC
14672]
Length = 947
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 24/125 (19%), Gaps = 13/125 (10%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q E L + A+ ++ GDFN + + + T
Sbjct: 251 RRQAE-LGRLAEGLGGVDGDLILVGDFNDGGDEP------AAALGLRDAWTEVHGPGDRT 303
Query: 63 CNVIKRNK------SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S T +S H +
Sbjct: 304 PTFDPGVNPLAAVSSLSGRASRLDRIFLRAGQLRAIGAFLRGDSPTTDGLYVSDHYGVAA 363
Query: 117 EYDFE 121
+
Sbjct: 364 DLQLS 368
>gi|296817523|ref|XP_002849098.1| type I inositol-1,4,5-trisphosphate 5-phosphatase 2 [Arthroderma otae
CBS 113480]
gi|238839551|gb|EEQ29213.1| type I inositol-1,4,5-trisphosphate 5-phosphatase 2 [Arthroderma otae
CBS 113480]
Length = 1222
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 32/128 (25%), Gaps = 21/128 (16%)
Query: 19 TGIPFVIAGDFNRKINSIG-----------------DTDDFWQKMDPDGLLIRFPQEKES 61
++ GD N +I+SI D D + +
Sbjct: 1042 DHEICILNGDLNYRIDSIPRNTVIEAVKANNLPKLLDRDQLLASKRKNPGFRLRTFNEAP 1101
Query: 62 TCN-VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS---KLSTHCPLTIE 117
+ D + + + + + R ++S H P++
Sbjct: 1102 ITFAPTYKYDVGTDNYDSSEKKRAPAWCDRLLYRGFGRIKQLEYRRHEVRVSDHRPVSGT 1161
Query: 118 YDFEKGNV 125
+ ++
Sbjct: 1162 FKMRVKSI 1169
>gi|237724358|ref|ZP_04554839.1| metallophosphoesterase [Bacteroides sp. D4]
gi|229437227|gb|EEO47304.1| metallophosphoesterase [Bacteroides dorei 5_1_36/D4]
Length = 324
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 33/113 (29%), Gaps = 20/113 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E +K +A K PF +AGD N + S + K I +
Sbjct: 230 ELIKDFAAAHKK---PFFLAGDLNAEPES------AFIKYLQQDFQILSDVNQ------- 273
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ID F++ S + S H PL I +
Sbjct: 274 HTFPAPAPTETIDYITALKQNMKGFTVTSAQVVNEPV----ASDHRPLVIVLE 322
>gi|228983625|ref|ZP_04143829.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228776110|gb|EEM24472.1| Endonuclease/exonuclease/phosphatase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 263
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+ + + + GDFN ++ G + + L ++ ++
Sbjct: 156 NRLMEHVDSNEISFLMGDFNNNARLQGEGYEYMMQKGLYDTYELAI----EKDEGTTVQG 211
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + L + S + S T R+ +S H + ++ D
Sbjct: 212 EIAGWDENKHNLRIDLILCNRSEKVRSSKVIFNGTNRNIISDHFGVEVQVD 262
>gi|225454561|ref|XP_002267349.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 1212
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 15/106 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
G P+ + GDFN + + + ++ D L+ P + S
Sbjct: 135 GDPWCLGGDFNITLFQHERSSQRRISSAMRRFAQIVDDLELVDLPLQGGEFTW------S 188
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ S+ S H P+ +E
Sbjct: 189 GGLNNQAWARLDRFLVSPSWLDQFSGV-TQGRLSRPTSDHFPIVLE 233
>gi|212692517|ref|ZP_03300645.1| hypothetical protein BACDOR_02013 [Bacteroides dorei DSM 17855]
gi|212664928|gb|EEB25500.1| hypothetical protein BACDOR_02013 [Bacteroides dorei DSM 17855]
Length = 276
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 22/113 (19%), Positives = 33/113 (29%), Gaps = 20/113 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
E +K +A K PF +AGD N + S + K I +
Sbjct: 182 ELIKDFAAAHKK---PFFLAGDLNAEPES------AFIKYLQQDFQILSDVNQ------- 225
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ID F++ S + S H PL I +
Sbjct: 226 HTFPAPSPTETIDYITALKQNMKGFTVTSAQVVNEPV----ASDHRPLVIVLE 274
>gi|209966133|ref|YP_002299048.1| endonuclease [Rhodospirillum centenum SW]
gi|209959599|gb|ACJ00236.1| endonuclease [Rhodospirillum centenum SW]
Length = 287
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 12/110 (10%), Positives = 27/110 (24%), Gaps = 21/110 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + D + P V GD N + ++ + S
Sbjct: 171 QVTRILSFLDAR--PPRPTVFMGDLN-------EWRPKAPRLARLSERLPDCAAPRSFH- 220
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ + + + S++ + S H P+
Sbjct: 221 ----------ARLPTLRLDRIFVSPTLHLASFEVVR-SAMTRRASDHLPV 259
>gi|91775775|ref|YP_545531.1| endonuclease/exonuclease/phosphatase [Methylobacillus flagellatus
KT]
gi|91709762|gb|ABE49690.1| Endonuclease/exonuclease/phosphatase [Methylobacillus flagellatus
KT]
Length = 235
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 29/119 (24%), Gaps = 20/119 (16%)
Query: 3 SQQGEWLKKWADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+ E L + + + P ++ GD N + ++ F
Sbjct: 136 RSEAENLLRLMQAVEEEERSPILLMGDINEW----QVPSPLLRYLN-----RCFTPLPCK 186
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
LD D KLS H PL +E ++
Sbjct: 187 PTFPSLCPVFRLDRVWHDAPGIRVTAHRLPGK----------GIRKLSDHLPLVVELEY 235
>gi|228924315|ref|ZP_04087565.1| hypothetical protein bthur0011_52690 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228835341|gb|EEM80732.1| hypothetical protein bthur0011_52690 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 344
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 19/155 (12%), Positives = 40/155 (25%), Gaps = 32/155 (20%)
Query: 1 MLSQQGEW--LKKWADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP 56
+L + E L + + T P ++ GD N +SI ++
Sbjct: 188 LLQRGAEAAVLYHEISETLHTHKEVPVILLGDLNDDEHSIPIEALTNRERLLKINGKPID 247
Query: 57 QEKESTCNVIKRNKSSL-----------------------DYFVIDRDNKNFLIDNSFSI 93
+++ K + DY + + +
Sbjct: 248 DDEQKIVYNYKLYDAFDLAPNQSGQKRLPTHYYKKLGNVFDYIFVSNVLNGKNEQHLGRV 307
Query: 94 VSYDQSD-----LDTRRSKLSTHCPLTIEYDFEKG 123
+Y D D S H + +F++
Sbjct: 308 SAYKVLDHHLKCDDIENKTQSDHAQVVATIEFKEN 342
>gi|224029661|gb|ACN33906.1| unknown [Zea mays]
Length = 343
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 13/126 (10%), Positives = 26/126 (20%), Gaps = 27/126 (21%)
Query: 20 GIPFVIAGDFN--RKINSIGDTDDFWQKMD-------------PDGLLIRFPQEKESTCN 64
V+ GD N ++ + G E T
Sbjct: 209 HDRVVLLGDLNYRIAMDDDEARQLVRARKWGMLLEGDELLLELSSGRQFHGWHEGHVTFA 268
Query: 65 VIKRNKSSLDYFVID-----------RDNKNFLIDNSFSIVSYDQSDLDTRR-SKLSTHC 112
+ + D+ + + Q + +LS H
Sbjct: 269 PTYKYSRNSDHLHWCADGVAAGREKQHRAPAWCDRILWRGKGMKQVRYERCGCYRLSDHR 328
Query: 113 PLTIEY 118
P+ +
Sbjct: 329 PVRALF 334
>gi|222149124|ref|YP_002550081.1| hypothetical protein Avi_2877 [Agrobacterium vitis S4]
gi|221736109|gb|ACM37072.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 277
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 19/121 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ +++ K ++ P V+ GDFN G ++ +
Sbjct: 171 RQQADFILKLMRER--ADCPTVLMGDFNEWRVGPGSALTRFEPLFGPLPPPVPS------ 222
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + I D R S H PL D +K
Sbjct: 223 ----------FPARLPVLALDRIMTNRPGLIADMQVHDSPLARL-ASDHLPLKAWIDLDK 271
Query: 123 G 123
Sbjct: 272 T 272
>gi|213162312|ref|ZP_03348022.1| hypothetical protein Salmoneentericaenterica_20883 [Salmonella
enterica subsp. enterica serovar Typhi str. E00-7866]
gi|213616262|ref|ZP_03372088.1| hypothetical protein SentesTyp_18024 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213648816|ref|ZP_03378869.1| hypothetical protein SentesTy_16923 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213855639|ref|ZP_03383879.1| hypothetical protein SentesT_16990 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289828778|ref|ZP_06546537.1| hypothetical protein Salmonellentericaenterica_19771 [Salmonella
enterica subsp. enterica serovar Typhi str. E98-3139]
gi|39932535|sp|Q8Z985|YAFD_SALTI RecName: Full=UPF0294 protein yafD
Length = 266
Score = 35.2 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R ++
Sbjct: 176 DQIAHHSGPVIMAGDFNAW--SRPRMNALYRFAREMSLRQVRFTD-------DQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 227 RPLDFVFYRGLNVNEASVLVT------------RASDHNPLLVEFS 260
>gi|294566523|gb|ADF18552.1| endonuclease-reverse transcriptase [Bombyx mori]
Length = 977
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 16/135 (11%), Positives = 31/135 (22%), Gaps = 26/135 (19%)
Query: 5 QGEWLKKWADQKIK---TGIPFVIAGDFNRKINS---------------IGDTDDFWQKM 46
Q E L + D +K ++ GD N K+ S D +
Sbjct: 146 QIEDLYRAIDTLLKSTKNHELVIVMGDMNAKVGSTITPGVTGAYGLGNRNDRGDTLIEFC 205
Query: 47 DPD----GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD 102
+ + V+ +I+ +
Sbjct: 206 QDNNLIIANTFFKLPPRRLYTWTS---PMHTVDRVVRNQIDYVMINRRYRNCIKKAQTYP 262
Query: 103 TRRSKLSTHCPLTIE 117
S H P+ ++
Sbjct: 263 GADI-GSDHNPVVVD 276
>gi|257458602|ref|ZP_05623737.1| endonuclease/exonuclease/phosphatase family protein [Treponema
vincentii ATCC 35580]
gi|257444036|gb|EEV19144.1| endonuclease/exonuclease/phosphatase family protein [Treponema
vincentii ATCC 35580]
Length = 260
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 34/118 (28%), Gaps = 19/118 (16%)
Query: 16 KIKTGIPFVIAGDFNRKIN-----SIGDTDDFWQKMDPDGLLIRFPQEKES-------TC 63
I + GDFN + + F + M GL+ + ++
Sbjct: 148 LIPEDNKALWIGDFNSSMQLKNEIDKNNHTRFLETMKKYGLVSAYHTNRQKKYGKEDQFT 207
Query: 64 NV-IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ RN + + + + +I ++ S HCP+ E
Sbjct: 208 FIGTYRNGQQRFFNDYIFYHHDRFKCKTVTIGRFNTFSFF------SDHCPVLAELQL 259
>gi|209964107|ref|YP_002297022.1| hypothetical protein RC1_0778 [Rhodospirillum centenum SW]
gi|209957573|gb|ACI98209.1| hypothetical protein RC1_0778 [Rhodospirillum centenum SW]
Length = 381
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 16/137 (11%), Positives = 35/137 (25%), Gaps = 16/137 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q + + + D P + GDFN + ++ P + + +
Sbjct: 239 NRQIDEIDDFLDSHRDPRNPLIFGGDFNMRGARERLDYAMSRRPYP--FVRYYCTVTAND 296
Query: 63 C----NVIKRNKSSLDYFVIDRDNKNFLIDNSFSI---VSYDQSDLD-----TRRSKLST 110
C + + D+ + + D R LS
Sbjct: 297 CDIRMSWDGDEPWLATQDLQGFDDGACVAVRPVRVAALFDAPVPDTPDEPAALRGRLLSD 356
Query: 111 H--CPLTIEYDFEKGNV 125
H + + V
Sbjct: 357 HDGYLVVYRLSWPAPGV 373
>gi|145548597|ref|XP_001459979.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427806|emb|CAK92582.1| unnamed protein product [Paramecium tetraurelia]
Length = 280
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 10/112 (8%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
++++ +I GDFN + D+ L + + +I K D
Sbjct: 171 KELEKYKNVIIMGDFNLETQ----KDEQSISPQYADLWKQLYPDNPGYTFIIDDFKRRFD 226
Query: 75 YFVIDRDNKNFLIDNSFSIVS----YDQSDLDTRRS--KLSTHCPLTIEYDF 120
++ + + Y + + S H L + +
Sbjct: 227 RILLKKGGSYQASNIEILGTKEIPLYKDNKPSMKGEVKTPSDHYALKLHLQY 278
>gi|91218119|ref|ZP_01255069.1| hypothetical protein P700755_13765 [Psychroflexus torquis ATCC
700755]
gi|91183763|gb|EAS70156.1| hypothetical protein P700755_13765 [Psychroflexus torquis ATCC
700755]
Length = 182
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 31/110 (28%), Gaps = 17/110 (15%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L D++ ++ GDFN S + + ++ V
Sbjct: 87 KQLLNIVDKRSNFSENLIVVGDFNTSSFSNHFRALVEGNLKDSRIGFGLLPTWPASFGV- 145
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + L+ + ++ + S H P++I
Sbjct: 146 -----------LQTTLDHCLVSKNLIVLDRSV-----GENIGSDHLPISI 179
>gi|324521956|gb|ADY47963.1| 5'-tyrosyl-DNA phosphodiesterase [Ascaris suum]
Length = 322
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 30/121 (24%), Gaps = 12/121 (9%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L Q LK+W V GD N + N +G+ + D + K
Sbjct: 209 LQQCFTQLKEW----NDGHTLIVFGGDLNIRDNEVGE----LPEGFLDAWVAAGSNPKCR 260
Query: 62 TCNVIK----RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + +S Q + S H + +
Sbjct: 261 FTWDTRLNDNKQAGGARCRFDRLFFNGGGVFSSVDFSFEGQDRIRRTLCFPSDHWAIVAK 320
Query: 118 Y 118
Sbjct: 321 I 321
>gi|269104284|ref|ZP_06156980.1| metal-dependent hydrolase [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268160924|gb|EEZ39421.1| metal-dependent hydrolase [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 296
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 9/111 (8%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+I+ +++ GDFN + ++ + + + +
Sbjct: 186 RIENNHSYILLGDFN-YPLYTSLNNKKEKQHNHWFFKQLGIPTTALKQHKTSFSCQIKIH 244
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS--------KLSTHCPLTIEY 118
R + + S L+T + +LS HCPL
Sbjct: 245 HKKSRLITYTQPIDHVISDKINISKLETYQYTNKEMSSNQLSDHCPLYFSI 295
>gi|302885025|ref|XP_003041406.1| hypothetical protein NECHADRAFT_54419 [Nectria haematococca mpVI
77-13-4]
gi|256722307|gb|EEU35693.1| hypothetical protein NECHADRAFT_54419 [Nectria haematococca mpVI
77-13-4]
Length = 297
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 36/126 (28%), Gaps = 9/126 (7%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIG--DTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + W + G P +IAGD N + + G + +
Sbjct: 172 IDQILAWVNSN-SKGKPVIIAGDTNDRWANSGRSINKLTDAGFTDSWVQLIRSGSYPQAG 230
Query: 64 NV-IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL-----DTRRSKLSTHCPLTIE 117
+ D D + +S + + + + LS H P+ +E
Sbjct: 231 ATADPCKVPAADNKCEIVDKVFYRSGDSVKLTATSFNYASKVFVQADGNILSDHNPIHVE 290
Query: 118 YDFEKG 123
+ +
Sbjct: 291 FSWSSS 296
>gi|297722279|ref|NP_001173503.1| Os03g0570775 [Oryza sativa Japonica Group]
gi|255674645|dbj|BAH92231.1| Os03g0570775 [Oryza sativa Japonica Group]
Length = 474
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 31/117 (26%), Gaps = 15/117 (12%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINS--------IGDTDDFWQKMDPDGLLIRFPQEKE 60
L + + +P +I GDFN +S + + L +
Sbjct: 88 LAELVRACQQNPLPTLIGGDFNILRSSLEKNNDRFNDRWPFLFNAVIDSFDLREIALTRR 147
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
++ L+ + S R LS H PL ++
Sbjct: 148 QFTW------ANSLPSPTYEKLDRVLMTTEWESKYPLVSVQALDRV-LSDHTPLLLD 197
>gi|212721774|ref|NP_001131212.1| hypothetical protein LOC100192520 [Zea mays]
gi|194690890|gb|ACF79529.1| unknown [Zea mays]
gi|194705668|gb|ACF86918.1| unknown [Zea mays]
Length = 343
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 13/126 (10%), Positives = 26/126 (20%), Gaps = 27/126 (21%)
Query: 20 GIPFVIAGDFN--RKINSIGDTDDFWQKMD-------------PDGLLIRFPQEKESTCN 64
V+ GD N ++ + G E T
Sbjct: 209 HDRVVLLGDLNYRIAMDDDEARQLVRARKWGMLLEGDELLLELSSGRQFHGWHEGHVTFA 268
Query: 65 VIKRNKSSLDYFVID-----------RDNKNFLIDNSFSIVSYDQSDLDTRR-SKLSTHC 112
+ + D+ + + Q + +LS H
Sbjct: 269 PTYKYSRNSDHLHWCADGVAAGREKQHRAPAWCDRILWRGKGMKQVRYERCGCYRLSDHR 328
Query: 113 PLTIEY 118
P+ +
Sbjct: 329 PVRALF 334
>gi|328949215|ref|YP_004366552.1| Endonuclease/exonuclease/phosphatase [Treponema succinifaciens DSM
2489]
gi|328449539|gb|AEB15255.1| Endonuclease/exonuclease/phosphatase [Treponema succinifaciens DSM
2489]
Length = 333
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 17/131 (12%), Positives = 31/131 (23%), Gaps = 19/131 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGD--------TDDFWQKMDPDG------LLIR 54
L + + G GDFNR IN + + +G
Sbjct: 201 LSFFMSHALNEGKAVFAVGDFNRDINDFCVKKNGNVLLRAWHGKLLGDEGLLVKSTWFDE 260
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD-----TRRSKLS 109
E + S +D + + +++ + S
Sbjct: 261 NENLIEPGSYYFREEWSRIDNIFYSGKIEVEDFFPATEGFWCNENSIPYKYSLWNGRGYS 320
Query: 110 THCPLTIEYDF 120
H PL +
Sbjct: 321 DHLPLVCKVRL 331
>gi|327300110|ref|XP_003234748.1| endonuclease/exonuclease/phosphatase [Trichophyton rubrum CBS
118892]
gi|326463642|gb|EGD89095.1| endonuclease/exonuclease/phosphatase [Trichophyton rubrum CBS
118892]
Length = 322
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 12/125 (9%), Positives = 29/125 (23%), Gaps = 8/125 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPF---VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + + + + +AGDFN + + + P +
Sbjct: 198 ESAKLILSLIQKYLARHPEVKGNFLAGDFNSIESQEAYREFTKPGSSIVDTYKKVPAAQH 257
Query: 61 -----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + K S +V+ + R S H +
Sbjct: 258 YGDEITFTGFDGKTKGSRIDYVMVGPQSASASIPFTVNGYAVVPNRFDNRIYNSDHRAVV 317
Query: 116 IEYDF 120
+
Sbjct: 318 ADVTL 322
>gi|304393251|ref|ZP_07375179.1| YD repeat-containing protein [Ahrensia sp. R2A130]
gi|303294258|gb|EFL88630.1| YD repeat-containing protein [Ahrensia sp. R2A130]
Length = 413
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 11/104 (10%), Positives = 24/104 (23%), Gaps = 16/104 (15%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
P ++ GD N ++ ++ + + R
Sbjct: 281 RNEDRPAMVTGDLNDVA-----WSRTTRRFLRISGMLDPREGRGQFNTFDARYP------ 329
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + F +VS + S H P+
Sbjct: 330 FLRWPLDHIFHSPQFQLVS-----MKRMPFVGSDHFPMFYRLAL 368
>gi|253761401|ref|XP_002489104.1| hypothetical protein SORBIDRAFT_0069s002020 [Sorghum bicolor]
gi|241947391|gb|EES20536.1| hypothetical protein SORBIDRAFT_0069s002020 [Sorghum bicolor]
Length = 659
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 34/121 (28%), Gaps = 16/121 (13%)
Query: 6 GEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDD--------FWQKMDPDGLLIRFP 56
+ ++ +P ++ GDFN + + + + + L
Sbjct: 118 ADAFLDELKAVCQESPLPVILGGDFNLIREANDKNSENINMGLINIFNEFIGEMQLRELK 177
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + K+N L + N+ + S S H P+ +
Sbjct: 178 RSGQRYTWTNKQNNPILVNLDRVLFSVNWEDH-------FPLSTSWGLTRVGSDHMPILV 230
Query: 117 E 117
+
Sbjct: 231 D 231
>gi|239980898|ref|ZP_04703422.1| hypothetical protein SalbJ_15743 [Streptomyces albus J1074]
gi|291452759|ref|ZP_06592149.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291355708|gb|EFE82610.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 290
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 10/99 (10%), Positives = 25/99 (25%), Gaps = 22/99 (22%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN + ++ W + + + +DY
Sbjct: 213 LLLGDFNARPDAPEL-TPLWATLRDA--------DPGAPTFPASAPDRRIDYVATSAGIG 263
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + S H P+ + +
Sbjct: 264 LRRAWTAPTGI-------------ASDHLPVVADLHLTR 289
>gi|168031629|ref|XP_001768323.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680501|gb|EDQ66937.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 369
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 20/142 (14%), Positives = 32/142 (22%), Gaps = 38/142 (26%)
Query: 16 KIKTGIPFVIAGDFNR----------------------KINSIGDTDDFW---------- 43
K P + GD N N+ +
Sbjct: 206 KRPHKKPLIWCGDLNVSNEVIDVSHPDFFSNAKLQGYTPPNAEDIGQPGFTLGERQRFAE 265
Query: 44 --QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF--SIVSYDQS 99
K D ++++ Y FL+ +VS D
Sbjct: 266 CLSKGDLVDTYRHLHKQQDFDAGFTWSGNPVGKYRGKRMRIDYFLLSRKLLDRLVSSDIH 325
Query: 100 DLDTRRSK--LSTHCPLTIEYD 119
+ S HCP+T+E
Sbjct: 326 GQGIEQEGFCGSDHCPITMEIR 347
>gi|313674251|ref|YP_004052247.1| endonuclease/exonuclease/phosphatase [Marivirga tractuosa DSM 4126]
gi|312940949|gb|ADR20139.1| Endonuclease/exonuclease/phosphatase [Marivirga tractuosa DSM 4126]
Length = 334
Score = 35.2 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 21/111 (18%)
Query: 18 KTGIPFVIAGDFNRKI--------NSIGDTDDFWQKM--DPDGLLIRFPQEKESTCNVIK 67
P ++ GDFN + + + + E +
Sbjct: 231 SKKYPVILMGDFNSRPPFASEVLEEEKTIEIFLEEPLIGEAISEERYLQNESQFFTFDTA 290
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
LDY +++ + D+ +S H P+ + +
Sbjct: 291 DPYERLDYVFYNKNKIRKIES-----------DVLREAEDISDHLPVWMTF 330
>gi|225445027|ref|XP_002280110.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 1034
Score = 35.2 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 15/106 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ + GDFN + + + D L+ P + + S
Sbjct: 92 DEPWCLGGDFNSTLYQGERNRQGRITPNMRRFAHIIDDLGLVDLPLQGGAFTW------S 145
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ S+ + +S H P+ +E
Sbjct: 146 GGLNNQSWARLDRFLVSPSWLDKFSGVN-QRRLPRPVSDHFPILLE 190
>gi|212212637|ref|YP_002303573.1| endonuclease/exonuclease/phosphatase family protein [Coxiella
burnetii CbuG_Q212]
gi|212011047|gb|ACJ18428.1| endonuclease/exonuclease/phosphatase family protein [Coxiella
burnetii CbuG_Q212]
Length = 255
Score = 35.2 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 14/117 (11%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L K + + + +IAGDFN G + ++++ + + K +
Sbjct: 153 QLITLSKRIEAHVPSHASLIIAGDFNDWR--RGAFNYMEKELELKEVYKVL-EGKHAKTY 209
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
R +D L+ SY KLS H PL ++ E
Sbjct: 210 PASRATLEVDRIYYRG---LKLLSGEIFNESY--------WKKLSDHLPLHAKFAIE 255
>gi|152986913|ref|YP_001348510.1| hypothetical protein PSPA7_3150 [Pseudomonas aeruginosa PA7]
gi|150962071|gb|ABR84096.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 245
Score = 35.2 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 33/117 (28%), Gaps = 16/117 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + L + + P V+AGDFN ++ L E
Sbjct: 144 QRQLQLLCELVTG-LPEREPVVVAGDFND-------WRQRADRLLAGCGLREVFVGAEG- 194
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R S + N+ S S LS H PL +E +
Sbjct: 195 -----RPARSFPARWPLLPLDRIYLRNARGRQPRILSRRPW--SHLSDHLPLAVEVE 244
>gi|62178824|ref|YP_215241.1| hypothetical protein SC0254 [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|167554228|ref|ZP_02347969.1| protein YafD [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|168232189|ref|ZP_02657247.1| protein YafD [Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|168238653|ref|ZP_02663711.1| protein YafD [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168239992|ref|ZP_02664924.1| protein YafD [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|168819170|ref|ZP_02831170.1| protein YafD [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194449849|ref|YP_002044242.1| hypothetical protein SeHA_C0296 [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194468873|ref|ZP_03074857.1| protein YafD [Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|194734062|ref|YP_002113275.1| hypothetical protein SeSA_A0288 [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197248605|ref|YP_002145258.1| hypothetical protein SeAg_B0302 [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|200390935|ref|ZP_03217546.1| protein YafD [Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|204927151|ref|ZP_03218353.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205360396|ref|ZP_03224611.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|238913722|ref|ZP_04657559.1| hypothetical protein SentesTe_21677 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|75484772|sp|Q57T01|YAFD_SALCH RecName: Full=UPF0294 protein yafD
gi|226708932|sp|B5F8W7|YAFD_SALA4 RecName: Full=UPF0294 protein yafD
gi|226708934|sp|B4TK80|YAFD_SALHS RecName: Full=UPF0294 protein yafD
gi|226708936|sp|B4TYG5|YAFD_SALSV RecName: Full=UPF0294 protein yafD
gi|62126457|gb|AAX64160.1| Hypothetical protein yafD [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|194408153|gb|ACF68372.1| protein YafD [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194455237|gb|EDX44076.1| protein YafD [Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|194709564|gb|ACF88785.1| protein YafD [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197212308|gb|ACH49705.1| protein YafD [Salmonella enterica subsp. enterica serovar Agona
str. SL483]
gi|197288558|gb|EDY27935.1| protein YafD [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|199603380|gb|EDZ01926.1| protein YafD [Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|204323816|gb|EDZ09011.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205321519|gb|EDZ09358.1| protein YafD [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|205333425|gb|EDZ20189.1| protein YafD [Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|205340078|gb|EDZ26842.1| protein YafD [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205344041|gb|EDZ30805.1| protein YafD [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205349903|gb|EDZ36534.1| endonuclease/exonuclease/phosphatase family protein [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|320084507|emb|CBY94299.1| UPF0294 protein yafD [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|322614538|gb|EFY11467.1| hypothetical protein SEEM315_17915 [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322620056|gb|EFY16928.1| hypothetical protein SEEM971_15626 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322623351|gb|EFY20190.1| hypothetical protein SEEM973_06036 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629351|gb|EFY26130.1| hypothetical protein SEEM974_10398 [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632071|gb|EFY28825.1| hypothetical protein SEEM201_09564 [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322637191|gb|EFY33893.1| hypothetical protein SEEM202_19074 [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640304|gb|EFY36964.1| hypothetical protein SEEM954_17200 [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322645929|gb|EFY42449.1| hypothetical protein SEEM054_14795 [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322652372|gb|EFY48726.1| hypothetical protein SEEM675_07166 [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322652576|gb|EFY48926.1| hypothetical protein SEEM965_20272 [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660386|gb|EFY56622.1| hypothetical protein SEEM19N_19983 [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322664539|gb|EFY60732.1| hypothetical protein SEEM801_06482 [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322669408|gb|EFY65558.1| hypothetical protein SEEM507_01365 [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322670954|gb|EFY67087.1| hypothetical protein SEEM877_07122 [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322678807|gb|EFY74862.1| hypothetical protein SEEM867_12235 [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322681836|gb|EFY77861.1| hypothetical protein SEEM180_16303 [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322687962|gb|EFY83928.1| hypothetical protein SEEM600_10621 [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322713275|gb|EFZ04846.1| UPF0294 protein yafD [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|323194316|gb|EFZ79511.1| hypothetical protein SEEM581_21429 [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323197732|gb|EFZ82864.1| hypothetical protein SEEM501_21520 [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323203472|gb|EFZ88497.1| hypothetical protein SEEM460_07580 [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323206783|gb|EFZ91736.1| hypothetical protein SEEM020_02514 [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323213398|gb|EFZ98199.1| hypothetical protein SEEM6152_07728 [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323221456|gb|EGA05872.1| hypothetical protein SEEM0047_13507 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226226|gb|EGA10442.1| hypothetical protein SEEM0055_01611 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229986|gb|EGA14106.1| hypothetical protein SEEM0052_01262 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233725|gb|EGA17814.1| hypothetical protein SEEM3312_06923 [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323238581|gb|EGA22639.1| hypothetical protein SEEM5258_09987 [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323244269|gb|EGA28278.1| hypothetical protein SEEM1156_09915 [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323246573|gb|EGA30548.1| hypothetical protein SEEM9199_16256 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252187|gb|EGA36040.1| hypothetical protein SEEM8282_14724 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323258052|gb|EGA41731.1| hypothetical protein SEEM8283_04161 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323259850|gb|EGA43481.1| hypothetical protein SEEM8284_21765 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323265135|gb|EGA48634.1| hypothetical protein SEEM8285_20619 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
Length = 266
Score = 35.2 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R ++
Sbjct: 176 DQIAHHSGPVIMAGDFNAW--SRPRMNALYRFAREMSLRQVRFTD-------DQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 227 RPLDFVFYRGLNVNEASVLVT------------RASDHNPLLVEFS 260
>gi|16759244|ref|NP_454861.1| hypothetical protein STY0279 [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29142981|ref|NP_806323.1| hypothetical protein t2607 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|25363861|pir||AH0533 conserved hypothetical protein STY0279 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16501535|emb|CAD08712.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138613|gb|AAO70183.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 259
Score = 35.2 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R ++
Sbjct: 169 DQIAHHSGPVIMAGDFNAW--SRPRMNALYRFAREMSLRQVRFTD-------DQRRRAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 220 RPLDFVFYRGLNVNEASVLVT------------RASDHNPLLVEFS 253
>gi|281201536|gb|EFA75745.1| hypothetical protein PPL_10798 [Polysphondylium pallidum PN500]
Length = 1311
Score = 35.2 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 23/95 (24%), Gaps = 14/95 (14%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+ GDFN + D LI S+ + LD
Sbjct: 345 ICTGDFNCIPGDSSPLSTILDFLCDDHDLIDLDSTNNSSTWKRGDTEKRLDRIYCKFTI- 403
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ S+ LS H P+T
Sbjct: 404 -------------ETSNFQLHPRALSDHSPITTNI 425
>gi|167995087|ref|ZP_02576177.1| protein YafD [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|194442759|ref|YP_002039492.1| hypothetical protein SNSL254_A0283 [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|195873887|ref|ZP_03080137.1| protein YafD [Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|197261791|ref|ZP_03161865.1| protein YafD [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|39932537|sp|Q8ZRM4|YAFD_SALTY RecName: Full=UPF0294 protein yafD
gi|226708935|sp|B4SV34|YAFD_SALNS RecName: Full=UPF0294 protein yafD
gi|194401422|gb|ACF61644.1| protein YafD [Salmonella enterica subsp. enterica serovar Newport
str. SL254]
gi|195631782|gb|EDX50302.1| protein YafD [Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|197240046|gb|EDY22666.1| protein YafD [Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|205327162|gb|EDZ13926.1| protein YafD [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|321224912|gb|EFX49973.1| hypothetical protein SEE_01797 [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|323128573|gb|ADX16003.1| protein YafD [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
Length = 266
Score = 35.2 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R ++
Sbjct: 176 DQIAHHSGPVIMAGDFNAW--SRPRMNALYRFAREMSLRQVRFTD-------DQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 227 RPLDFVFYRGLNVNEASVLVT------------RASDHNPLLVEFS 260
>gi|212715437|ref|ZP_03323565.1| hypothetical protein BIFCAT_00332 [Bifidobacterium catenulatum DSM
16992]
gi|212661612|gb|EEB22187.1| hypothetical protein BIFCAT_00332 [Bifidobacterium catenulatum DSM
16992]
Length = 365
Score = 35.2 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 31/113 (27%), Gaps = 13/113 (11%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L + + T +V GDFN + + +
Sbjct: 265 LDELGRLRYDTSRRYVFMGDFNATDDHTPFRNFLGARFTDAAKQA---AGGLVFTW---- 317
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+++DY + ++D+ + + + S H L F+
Sbjct: 318 -PANIDYVPTFAGIDHIVLDSGMLA-----GRVKSLKIDGSDHKALLATVQFD 364
>gi|3046704|emb|CAA18234.1| putative protein [Arabidopsis thaliana]
gi|7269488|emb|CAB79491.1| putative protein [Arabidopsis thaliana]
Length = 1141
Score = 35.2 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 21/130 (16%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF----------WQKMDPDGL 51
L ++ L + P+++ GDFN+ ++ + +++ D
Sbjct: 113 LWREITAL---VASPVTFNRPWILLGDFNQVLHPHEHSRHVSLNVDRRIRDFRECLLDAE 169
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
L + S K + + L++ S+S + + S S H
Sbjct: 170 LSDLVYKGSSFTWWNKS-----KTRPVAKKIDRILVNESWSNL-FPSSFGLFGPPDFSDH 223
Query: 112 --CPLTIEYD 119
C + +E D
Sbjct: 224 ASCGVVLELD 233
>gi|309812653|ref|ZP_07706397.1| endonuclease/exonuclease/phosphatase family protein [Dermacoccus
sp. Ellin185]
gi|308433348|gb|EFP57236.1| endonuclease/exonuclease/phosphatase family protein [Dermacoccus
sp. Ellin185]
Length = 226
Score = 35.2 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 17/105 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
AD + +P+ IAGDFN N + + G I ++
Sbjct: 133 ADPNLPGDVPWAIAGDFNELENGPAGREFKAHGLVDAGPRI-------------NTFNAA 179
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ S ++ + D S ++ + + H PL ++
Sbjct: 180 EPHK----RIDFVYASPSLTLETVDMSAVEHDMTVATDHRPLVVD 220
>gi|304315069|ref|YP_003850216.1| hypothetical protein MTBMA_c13150 [Methanothermobacter marburgensis
str. Marburg]
gi|302588528|gb|ADL58903.1| conserved hypothetical protein [Methanothermobacter marburgensis
str. Marburg]
Length = 231
Score = 35.2 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 21/128 (16%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIG-------DTDDFWQKMDPDGLLIR 54
S+ + L + ++ +I GDFN N ++ ++ G
Sbjct: 114 FSEFLDLLYNYIEE---GEDLIIIGGDFNINKNFSPSLRRLALLAEEMTGRLSELGFRDV 170
Query: 55 FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL---DTRRSKLSTH 111
+E++ + + I+ R +LS H
Sbjct: 171 LREEEDPFT--------FMTPNGGKYQIDYLFVPEGVKILDVWHPPAGEIIETRPRLSDH 222
Query: 112 CPLTIEYD 119
PL + +
Sbjct: 223 IPLRVTLE 230
>gi|288937013|ref|YP_003441072.1| endonuclease/exonuclease/phosphatase [Klebsiella variicola At-22]
gi|330005761|ref|ZP_08305373.1| endonuclease/exonuclease/phosphatase family protein [Klebsiella sp.
MS 92-3]
gi|288891722|gb|ADC60040.1| Endonuclease/exonuclease/phosphatase [Klebsiella variicola At-22]
gi|328536129|gb|EGF62517.1| endonuclease/exonuclease/phosphatase family protein [Klebsiella sp.
MS 92-3]
Length = 268
Score = 35.2 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN +M+ R +E + +R ++
Sbjct: 179 DQIAHHSGPVIMAGDFNA---------WSRPRMNALYRFAREMSLREVRFSDDQRRRAFG 229
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D ++ S H PL +E+
Sbjct: 230 RPL------------DFVFYRGLSVHDASVLVTRASDHNPLLVEFS 263
>gi|207723157|ref|YP_002253556.1| metal-dependent hydrolase protein [Ralstonia solanacearum MolK2]
gi|206588351|emb|CAQ35314.1| metal-dependent hydrolase protein [Ralstonia solanacearum MolK2]
Length = 289
Score = 35.2 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 24/105 (22%), Gaps = 4/105 (3%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDF--WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ VI GDFN K +S + +
Sbjct: 184 LAQTHATVICGDFNCKPDSTPKRLATVPFSHETATLYDAWEVAHGPAPQPPTFGVHDRTG 243
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ LI ++ S H P+ +E +
Sbjct: 244 WTEPAYACDFMLISEPLKTRVARVEVNSV--TQASDHQPMLLELN 286
>gi|15838039|ref|NP_298727.1| hypothetical protein XF1438 [Xylella fastidiosa 9a5c]
gi|9106456|gb|AAF84247.1|AE003974_2 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 245
Score = 35.2 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 9/107 (8%), Positives = 29/107 (27%), Gaps = 21/107 (19%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ + ++ GDFN + + + + P R +
Sbjct: 152 FIADLLAEYPNTILMGDFNCRADCSEMQVLYRR-------TRLQPPGVVIPTFPSWRPER 204
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++D+ ++ + + S H ++++
Sbjct: 205 AIDHILVSEGLH--------------ICKTEAVPAAFSDHLAVSMDL 237
>gi|330830383|ref|YP_004393335.1| endonuclease/exonuclease/phosphatase family [Aeromonas veronii
B565]
gi|328805519|gb|AEB50718.1| Endonuclease/exonuclease/phosphatase family [Aeromonas veronii
B565]
Length = 281
Score = 35.2 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 31/117 (26%), Gaps = 24/117 (20%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L + P ++AGDFN D Q + QE
Sbjct: 182 FREQLNDLTALVRRHQG---PVILAGDFNT-------WSDKRQFWLSKLVDELGLQEAVP 231
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ + + R+ + + + S H P+ +
Sbjct: 232 VPDLRRTAFGRPLDHLYYRNLDLVEVSSPATDS--------------SDHNPIIARF 274
>gi|255532421|ref|YP_003092793.1| endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
gi|255345405|gb|ACU04731.1| Endonuclease/exonuclease/phosphatase [Pedobacter heparinus DSM
2366]
Length = 576
Score = 35.2 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 27/117 (23%), Gaps = 23/117 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + PF++ GDFN +S+ + +
Sbjct: 483 QATAINNIV---TGISYPFILGGDFNEIPSSVTIAKLKEKFTLGCISSCPATHPSNAAT- 538
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
R F+ ++ T + S H P+ +
Sbjct: 539 ---------------RSIDYFMSRPG----GFNVLSYGTINTLASDHLPVVATVTLQ 576
>gi|56414622|ref|YP_151697.1| hypothetical protein SPA2511 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197363550|ref|YP_002143187.1| hypothetical protein SSPA2342 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|207855770|ref|YP_002242421.1| hypothetical protein SEN0260 [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|56128879|gb|AAV78385.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197095027|emb|CAR60573.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|206707573|emb|CAR31847.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|323214691|gb|EFZ99442.1| hypothetical protein SEEM0077_18665 [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323272698|gb|EGA56105.1| hypothetical protein SEEM8287_15394 [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 259
Score = 35.2 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R ++
Sbjct: 169 DQIAHHSGPVIMAGDFNAW--SRPRMNALYRFAREMSLRQVRFTD-------DQRRRAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 220 RPLDFVFYRGLNVNEASVLVT------------RASDHNPLLVEFS 253
>gi|326495490|dbj|BAJ85841.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 460
Score = 35.2 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 38/112 (33%), Gaps = 5/112 (4%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+W+D++++ G N + M R + + K+
Sbjct: 308 EWSDEEVRNA-----TGSSNVMVARHPLKLSSSYAMLKGNSSNRGHHGEPLATSYHKKFL 362
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
++DY + + ++ + + ++ R S H P+ E+ F +
Sbjct: 363 GTVDYLWYTPGLECSRVLDTLPVDALKRTRGLPTREMGSDHLPIVAEFIFSE 414
>gi|218197163|gb|EEC79590.1| hypothetical protein OsI_20770 [Oryza sativa Indica Group]
Length = 696
Score = 35.2 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 26/110 (23%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L + + + D++ + + + DG + +
Sbjct: 552 LNYRINLSYERAHELISKQDWDGLFENDQLKRELSKGHTFDGWIEGDISFPPTYKYEFDS 611
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K D R + KLS H P+T +
Sbjct: 612 EKYVSDEPKSGRRTPAWCDRILSRGKGIRLISYRRGELKLSDHRPVTAVF 661
>gi|152977829|ref|YP_001343458.1| hypothetical protein Asuc_0143 [Actinobacillus succinogenes 130Z]
gi|150839552|gb|ABR73523.1| Endonuclease/exonuclease/phosphatase [Actinobacillus succinogenes
130Z]
Length = 296
Score = 35.2 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 31/118 (26%), Gaps = 26/118 (22%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-DDFWQKMDPDGLLIRFPQEKESTC 63
Q E LK+ Q V+ GDFN + + + + + ++
Sbjct: 204 QLETLKQLVAQH---HGAVVLTGDFNAWSKNRNAQLQALIRSLGLTAVHFSPDERIKAFG 260
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
++ I + + S H P+ + + E
Sbjct: 261 YP----------------------LDNIFIRGVTVHSAQSTALRSSDHNPVELHFSLE 296
>gi|331082708|ref|ZP_08331831.1| hypothetical protein HMPREF0992_00755 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330400327|gb|EGG79969.1| hypothetical protein HMPREF0992_00755 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 354
Score = 35.2 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 36/126 (28%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ-KMDPDGLLIRFPQEKESTC 63
Q + L + ++ + G + GDFN+ + P + E S
Sbjct: 230 QSKMLAEKLSKEYEAGNYVIAGGDFNQTFEGMDKYPITNTENWVPGIIGQDTLPEHFSFA 289
Query: 64 NVIKRNKSSLDYFVID--------RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
L F++ ++ ++ + + + H P+
Sbjct: 290 VDDTYPTCRLLNAPYTGSYETSQVYVIDGFIVSDNITVSDISVINT---DFEYTDHQPVQ 346
Query: 116 IEYDFE 121
+E +
Sbjct: 347 MEISLK 352
>gi|260589302|ref|ZP_05855215.1| endonuclease/exonuclease/phosphatase family protein [Blautia
hansenii DSM 20583]
gi|260540383|gb|EEX20952.1| endonuclease/exonuclease/phosphatase family protein [Blautia
hansenii DSM 20583]
Length = 354
Score = 35.2 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 36/126 (28%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQ-KMDPDGLLIRFPQEKESTC 63
Q + L + ++ + G + GDFN+ + P + E S
Sbjct: 230 QSKMLAEKLSKEYEAGNYVIAGGDFNQTFEGMDKYPITNTENWVPGIIGQDTLPEHFSFA 289
Query: 64 NVIKRNKSSLDYFVID--------RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
L F++ ++ ++ + + + H P+
Sbjct: 290 VDDTYPTCRLLNAPYTGSYETSQVYVIDGFIVSDNITVSDISVINT---DFEYTDHQPVQ 346
Query: 116 IEYDFE 121
+E +
Sbjct: 347 MEISLK 352
>gi|182419446|ref|ZP_02950698.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
butyricum 5521]
gi|237666690|ref|ZP_04526675.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182376777|gb|EDT74349.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
butyricum 5521]
gi|237657889|gb|EEP55444.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 265
Score = 35.2 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 18/119 (15%), Positives = 39/119 (32%), Gaps = 10/119 (8%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L + K + GDFN ++ + + L + + +S
Sbjct: 154 QADKLLDTVNSKKTA----IFMGDFNNNAF---VRNEGYDYLINKNLNDLYLKTDKSDEE 206
Query: 65 VIKRNKSSLDYFVIDR---DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
K +D + ++ L +N + + + +S H + +E DF
Sbjct: 207 CSATVKGKIDGWDENKEKLRLDLILSNNLLKVKNARVIFNGINKEIISDHYGVELEIDF 265
>gi|119897710|ref|YP_932923.1| hypothetical protein azo1419 [Azoarcus sp. BH72]
gi|119670123|emb|CAL94036.1| conserved hypothetical protein [Azoarcus sp. BH72]
Length = 283
Score = 35.2 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 1/96 (1%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
V+ GDFN + S+ + DR
Sbjct: 188 VLCGDFNCEPGSVEHAALCADAAVAGAAFRD-CWTVLHGAAPHPPSVGLHGAEWPDRPYC 246
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S +V +S + S H P+ +E
Sbjct: 247 CDFVFASEGLVPRVRSLQIVTETAASDHQPVLLELS 282
>gi|225437086|ref|XP_002279689.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 558
Score = 35.2 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 8/72 (11%), Positives = 17/72 (23%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + + N R + R + + +Q
Sbjct: 443 RVFEGWNEGKIYFPPTYKYSNNSDRYAGDDMHPKEKRRTPAWCDRILWYGRGLNQLSYVR 502
Query: 104 RRSKLSTHCPLT 115
S+ S H P+
Sbjct: 503 GESRFSDHRPVY 514
>gi|255955487|ref|XP_002568496.1| Pc21g14830 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590207|emb|CAP96380.1| Pc21g14830 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1192
Score = 35.2 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 11/99 (11%), Positives = 24/99 (24%), Gaps = 3/99 (3%)
Query: 30 NRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN 89
N + + G +R E T + D + ++ +
Sbjct: 1043 NNLPKLLDRDQLLASRRKNPGFRLRAFTESPITFAPTYKYDVGTDDYDSSDKKRSPAWCD 1102
Query: 90 SFSIV---SYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
Q D + S H P++ + +
Sbjct: 1103 RILYRGLGRVKQLDYRRHEVRASDHRPVSAAFKIRAKTI 1141
>gi|21241492|ref|NP_641074.1| hypothetical protein XAC0721 [Xanthomonas axonopodis pv. citri str.
306]
gi|21106837|gb|AAM35610.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 245
Score = 35.2 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 10/112 (8%), Positives = 28/112 (25%), Gaps = 21/112 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + ++ GDFN + + P + R
Sbjct: 151 AFIAELLSDHPNAMLMGDFNCMADRPEMQSLY-------RHTRLQPPSCDVHTFPSWRPD 203
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
++D+ ++ + + S H + ++ K
Sbjct: 204 RAIDHILVSDSL--------------VIEHTEAIPAAFSDHLAVGMDIRVPK 241
>gi|16763641|ref|NP_459256.1| hypothetical protein STM0258 [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16418757|gb|AAL19215.1| putative cytoplasmic protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|261245483|emb|CBG23273.1| Hypothetical UPF0294 protein [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267991945|gb|ACY86830.1| hypothetical protein STM14_0303 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301156879|emb|CBW16355.1| hypothetical protein SL1344_0253 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312911223|dbj|BAJ35197.1| hypothetical protein STMDT12_C02540 [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|332987204|gb|AEF06187.1| hypothetical protein STMUK_0260 [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 259
Score = 35.2 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R ++
Sbjct: 169 DQIAHHSGPVIMAGDFNAW--SRPRMNALYRFAREMSLRQVRFTD-------DQRRRAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 220 RPLDFVFYRGLNVNEASVLVT------------RASDHNPLLVEFS 253
>gi|282861539|ref|ZP_06270603.1| Endonuclease/exonuclease/phosphatase [Streptomyces sp. ACTE]
gi|282563355|gb|EFB68893.1| Endonuclease/exonuclease/phosphatase [Streptomyces sp. ACTE]
Length = 341
Score = 35.2 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 27/118 (22%), Gaps = 21/118 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + + V+ GD N +N Q G +
Sbjct: 245 DRSADALGEAIAD--EPIERVVLLGDLNGTMNDRSLNAVTAQMRSTQG----AAGDGFGF 298
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +D ++ + S + S H P+
Sbjct: 299 SWPAAFPMARIDQIMVRG-----VEPLSSWTLPATD----------SDHLPIAARVQL 341
>gi|242084998|ref|XP_002442924.1| hypothetical protein SORBIDRAFT_08g004970 [Sorghum bicolor]
gi|241943617|gb|EES16762.1| hypothetical protein SORBIDRAFT_08g004970 [Sorghum bicolor]
Length = 499
Score = 35.2 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 15/115 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNR--KINSIGDTDD------FWQKMDPDGLLIRFPQEKE 60
L + A+ K +P++I GDFN D + + L
Sbjct: 371 LVEIANTCSKETLPYIIGGDFNIMCCPEDKSSGDFDPKWPNLFNAIIESLDLKEITMNGR 430
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ I L+ I+ + + ++ R +S H PL
Sbjct: 431 QYTWTGPGDNP------IFEKLDRVLVTTEMEIM-FPLTKVEPRDGNISDHNPLV 478
>gi|115396906|ref|XP_001214092.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193661|gb|EAU35361.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 426
Score = 35.2 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 7/119 (5%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L + D G P ++ GD N + S G+ ++ I
Sbjct: 167 QQLADYIDTN-SAGNPVMVFGDTNARYTSAGENIRVFE-----TQEGMSNPAPTRGSARI 220
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL-DTRRSKLSTHCPLTIEYDFEKGN 124
R + + + +D Y + + + LS H P++ + + +
Sbjct: 221 PRRTRTCETVDKIFYRGSRAVDLKAVYWDYVGTKFLSSNGTILSDHNPISSNITWTRSS 279
>gi|62088806|dbj|BAD92850.1| deoxyribonuclease I-like 3 precursor variant [Homo sapiens]
Length = 152
Score = 35.2 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 12/92 (13%), Positives = 33/92 (35%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ F+ GDFN + + ++ D + ++E T N +
Sbjct: 40 KHRWKAENFIFMGDFNAGCSYVPKKAWKNIRLRTDPRFVWLIGDQEDTTVKKSTNCAYDR 99
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ ++ + ++ S S+ + ++ T +
Sbjct: 100 IVLRGQEIVSSVVPKSNSVFDFQKAYKLTEKE 131
>gi|84496163|ref|ZP_00995017.1| hypothetical protein JNB_01550 [Janibacter sp. HTCC2649]
gi|84382931|gb|EAP98812.1| hypothetical protein JNB_01550 [Janibacter sp. HTCC2649]
Length = 225
Score = 35.2 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 14/112 (12%), Positives = 27/112 (24%), Gaps = 19/112 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
Q I G ++AGD N +S F G++ + R
Sbjct: 132 ILQTINVGGEVILAGDLNEG-DSGDAWKAFA------GVMRLVSPTTPTYPATRPR---- 180
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-STHCPLTIEYDFEKG 123
+ + + S H P ++ ++
Sbjct: 181 -------KVLDVIFASAGLQAEPHVDLPIAEADLIAGSDHRPTWVDIRLQET 225
>gi|134108925|ref|XP_776577.1| hypothetical protein CNBC0700 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259257|gb|EAL21930.1| hypothetical protein CNBC0700 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1319
Score = 35.2 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 13/125 (10%), Positives = 31/125 (24%), Gaps = 17/125 (13%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDT----------------DDFWQKMDPDGLLIRF 55
W + + A DFN +++ D + MD + + +
Sbjct: 801 WEADEHLGHRIIIWAADFNYRVSLPNLEVRDLVKANSLDALLGADQLLKAMDAGEVFMGY 860
Query: 56 PQEKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ N + + + F + + S H P+
Sbjct: 861 DEGPIRFPPTYKYDNGTDSYDTSEKQRIPAWTDRVLFKGSALRLHEYTRAELMTSDHRPV 920
Query: 115 TIEYD 119
++
Sbjct: 921 YAVFE 925
>gi|320158549|ref|YP_004190927.1| hypothetical protein VVM_01457 [Vibrio vulnificus MO6-24/O]
gi|319933861|gb|ADV88724.1| hypothetical protein VVMO6_03702 [Vibrio vulnificus MO6-24/O]
Length = 322
Score = 35.2 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 19/131 (14%), Positives = 37/131 (28%), Gaps = 17/131 (12%)
Query: 5 QGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ L ++ + + P VI GDFN INS + + L +E
Sbjct: 189 EAVLLSQYIKKIYASHARPMVIMGDFNANINSTELK-PLIDESNTPLLKDVRDWLREQPI 247
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD---------------QSDLDTRRSKL 108
+ K++ + L+ F+ + +
Sbjct: 248 FSDEAQKATHYHGSQGLILDYLLLSEEFAQQNAQQRGKITHLVVWDKHLVNPSFEVDQFA 307
Query: 109 STHCPLTIEYD 119
S H + + D
Sbjct: 308 SDHAFVAVTID 318
>gi|313891165|ref|ZP_07824784.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
pseudoporcinus SPIN 20026]
gi|313120528|gb|EFR43648.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
pseudoporcinus SPIN 20026]
Length = 275
Score = 35.2 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 29/104 (27%), Gaps = 2/104 (1%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ +P V+ GDFN +S G + + V
Sbjct: 167 QSLQNSDLPLVVMGDFNNPTDSKGYNLILRSSLGLRDSHKVAEIVFGNHSIVS-DIDGWE 225
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + F+I + + +S H L++E
Sbjct: 226 GNKD-SFKVDHAFMTQEFNISRSEITFEGGDAPVVSDHYGLSVE 268
>gi|227822472|ref|YP_002826444.1| hypothetical protein NGR_c19280 [Sinorhizobium fredii NGR234]
gi|227341473|gb|ACP25691.1| hypothetical protein NGR_c19280 [Sinorhizobium fredii NGR234]
Length = 368
Score = 35.2 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 12/100 (12%), Positives = 24/100 (24%), Gaps = 9/100 (9%)
Query: 29 FNRKINSIGDTDDFWQK--MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFL 86
+ + + ++ +D L E+ C + S +
Sbjct: 268 LDILSHDGFVENPMSRRPVLDRWTLFHSRGPEERHLCQLDYIWLSPALARRNSSRVPEIV 327
Query: 87 IDNSFSIVSY----DQSDLDTRRS---KLSTHCPLTIEYD 119
+ + K S HCPL + D
Sbjct: 328 RAGQPYRTIFPAGQEVERYPRTGWDRPKASDHCPLVMTLD 367
>gi|147793829|emb|CAN71156.1| hypothetical protein VITISV_036760 [Vitis vinifera]
Length = 1793
Score = 35.2 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 11/103 (10%), Positives = 28/103 (27%), Gaps = 9/103 (8%)
Query: 20 GIPFVIAGDFNRKINSIGDT-----DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
P+ +AGDFN + + + ++ +
Sbjct: 988 NGPWCVAGDFNAILRPEESSRGGSLNSIMRRFXEVIEELELKDLPXVGGPFTWTGG---T 1044
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL++ + + + +S H P+ ++
Sbjct: 1045 DNQSFSRLDRFLVNEEWDSH-FGDARQFLLPRPVSDHFPILMD 1086
>gi|311977773|ref|YP_003986893.1| hypothetical protein MIMI_gp0419 [Acanthamoeba polyphaga mimivirus]
gi|82000306|sp|Q5UQW5|YL388_MIMIV RecName: Full=Uncharacterized protein L388
gi|55417007|gb|AAV50657.1| unknown [Acanthamoeba polyphaga mimivirus]
gi|308204374|gb|ADO18175.1| putative endonuclease/exonuclease/phosphatase [Acanthamoeba
polyphaga mimivirus]
Length = 268
Score = 35.2 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 36/119 (30%), Gaps = 4/119 (3%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L + D++ + ++AGDFN + D +K
Sbjct: 152 RKSILLLPELIDKQCLSDSKIILAGDFNT--DDKLLFDTLKNNNFDRLSQTFNTTDKVKL 209
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--DQSDLDTRRSKLSTHCPLTIEYD 119
+ + D + ++ Y + D + +S H P+ I ++
Sbjct: 210 NVSFVGKRDNFGKLTEDLYLDHVFGREVYNYNIYCPFEYDFIINKYIVSDHLPVVIIFE 268
>gi|315498207|ref|YP_004087011.1| endonuclease/exonuclease/phosphatase [Asticcacaulis excentricus CB
48]
gi|315416219|gb|ADU12860.1| Endonuclease/exonuclease/phosphatase [Asticcacaulis excentricus CB
48]
Length = 294
Score = 34.8 bits (78), Expect = 3.6, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 20/115 (17%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E L+ D + + V+ GDFN ++ G MD L F
Sbjct: 196 RQLERLRA--DLRDERPERTVLVGDFNTTPSASGL-------MDFSRNLGLFAAPAPVGT 246
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ + N + S+ + S H P+ ++
Sbjct: 247 WP------AVLPAPLRIGIDNAFAGQALSLRNRK-----AGPYYGSDHRPIRVDI 290
>gi|238899156|ref|YP_002924838.1| hypothetical protein HDEF_2127 [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229466916|gb|ACQ68690.1| conserved protein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 268
Score = 34.8 bits (78), Expect = 3.6, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 21/119 (17%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L+ Q P ++AGDFN + + L ++ V
Sbjct: 170 QQLEPIGKQIAAHKGPVILAGDFNTWSK---KRVKALKAFTQNMNLEEVSFPVDNRSLVF 226
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
R + + ++ + + L ++ S H PL +++D +
Sbjct: 227 GRPLDFIFFRGLNLIHSSVL------------------ATQASDHNPLLVQFDVSSNTI 267
>gi|254439756|ref|ZP_05053250.1| hypothetical protein OA307_4626 [Octadecabacter antarcticus 307]
gi|198255202|gb|EDY79516.1| hypothetical protein OA307_4626 [Octadecabacter antarcticus 307]
Length = 117
Score = 34.8 bits (78), Expect = 3.6, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 30/115 (26%), Gaps = 19/115 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + ++AGDFN +S L ++ T
Sbjct: 22 QAKRAMTLLSAIALPQHNIILAGDFNVLPDSE-----ALAIFADWSLRDLVGRQDTRT-- 74
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
Y R ++ S + S+D +S H P+ +
Sbjct: 75 --------AIYPKDIRHANYMMVTASVDVRSFDVPADPV----VSDHRPMISTVN 117
>gi|147828499|emb|CAN77578.1| hypothetical protein VITISV_015344 [Vitis vinifera]
Length = 1102
Score = 34.8 bits (78), Expect = 3.6, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 17/106 (16%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD---------FWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
P+ + GDFN + + F + ++ GL+ Q E C+ +
Sbjct: 508 EDPWCLGGDFNITLFPRERSSQRIISSAMRKFAEIVNDLGLVDLPLQGGE--CSWNEGQN 565
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ FL+ S+ + +S H P+ +
Sbjct: 566 NQTW-----ARLDRFLVSLSWIDQFSGIN-QCRLPRSISDHFPIML 605
>gi|4263828|gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 34.8 bits (78), Expect = 3.6, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 39/111 (35%), Gaps = 7/111 (6%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES----- 61
E ++ D + P+++ GDFN ++ ++ P G+ + S
Sbjct: 367 EDIRNHHDSPLFRNKPWMLCGDFNEILDGSEHSNYDTSPFTPLGMRDFQEVVRYSSLTDL 426
Query: 62 -TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ + +I + L+++S+ +++ S S H
Sbjct: 427 GYHGPRFTWCNKRENGLICKKLDKVLVNDSW-CITFPHSYSVFEAGGCSDH 476
>gi|290976752|ref|XP_002671103.1| predicted protein [Naegleria gruberi]
gi|284084669|gb|EFC38359.1| predicted protein [Naegleria gruberi]
Length = 358
Score = 34.8 bits (78), Expect = 3.6, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 28/105 (26%), Gaps = 4/105 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P ++ GD N + + + + + N + S
Sbjct: 245 RPNILVGDLNSGPMTQPEGYETLAGYGYQSIDPNKATFCVNGLNWESGDCSDDPERNTGM 304
Query: 81 DNKNFLIDNSFSIVSYDQS----DLDTRRSKLSTHCPLTIEYDFE 121
D+ + +++ S S H +T E ++
Sbjct: 305 DHIMVDKFSRILEWNFNNSFKLQLFGDSTPTPSDHLGITTELNYN 349
>gi|87240758|gb|ABD32616.1| reverse transcriptase - beet retrotransposon, putative [Medicago
truncatula]
Length = 258
Score = 34.8 bits (78), Expect = 3.6, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 25/115 (21%), Gaps = 18/115 (15%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDD----------FWQKMDPDGLLIRFPQEKEST 62
+ G + GDFN S + D L P
Sbjct: 101 LRLQQLRGRKVCVCGDFNDVWCSEERRSVNVRHSSLDFSHFNSFIGDNSLHDLPLGGRKF 160
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+S L + + + LS HCPL +
Sbjct: 161 TWFKGDGRSMSRLDRFLLSEDWCLAWPNCLQL--------AQLWGLSDHCPLVLS 207
>gi|260889134|ref|ZP_05900397.1| endonuclease/exonuclease/phosphatase family protein [Leptotrichia
hofstadii F0254]
gi|260861194|gb|EEX75694.1| endonuclease/exonuclease/phosphatase family protein [Leptotrichia
hofstadii F0254]
Length = 240
Score = 34.8 bits (78), Expect = 3.6, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 16/102 (15%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV-IDRDN 82
+ GDFN + D NKS+L+ +
Sbjct: 151 FLCGDFNLLPTTEYYRKIAENWNDTYFEGKDLE------------NKSNLENRNLETQRI 198
Query: 83 KNFLIDNSFSIV---SYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + S+ +D +KLS H P + + E
Sbjct: 199 DYIMAKKGENYRTKQSFFINDDSQEWTKLSDHLPYMVVLEIE 240
>gi|260173227|ref|ZP_05759639.1| Endonuclease/exonuclease/phosphatase [Bacteroides sp. D2]
gi|315921500|ref|ZP_07917740.1| metallophosphoesterase [Bacteroides sp. D2]
gi|313695375|gb|EFS32210.1| metallophosphoesterase [Bacteroides sp. D2]
Length = 263
Score = 34.8 bits (78), Expect = 3.6, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 22/99 (22%)
Query: 22 PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRD 81
P ++ GDFN + + + MD VI D
Sbjct: 178 PVILGGDFNARH-----YSEVIRGMDSWFAA------------SNDDFGMPAWKPVIKID 220
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ ++S T +S LS H P+ E ++
Sbjct: 221 YLFAYPQKGWRVIS-----TQTVQSLLSDHLPIITELEY 254
>gi|302534003|ref|ZP_07286345.1| endonuclease/exonuclease/phosphatase [Streptomyces sp. C]
gi|302442898|gb|EFL14714.1| endonuclease/exonuclease/phosphatase [Streptomyces sp. C]
Length = 252
Score = 34.8 bits (78), Expect = 3.6, Method: Composition-based stats.
Identities = 11/124 (8%), Positives = 23/124 (18%), Gaps = 20/124 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L A + A D N D + + +
Sbjct: 144 QAQLLLDRAAALGAPH--VIAAADVNEAAGGPAFGRLSGALQDCWTVSPWGDGDTFPSTA 201
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-----STHCPLTIEYD 119
+R +++ + + H P+
Sbjct: 202 PTRR-------------IDAVFASPGVEVLACGVPAGLPGVTTPDLRAATDHLPVLAALR 248
Query: 120 FEKG 123
G
Sbjct: 249 VPAG 252
>gi|255727857|ref|XP_002548854.1| hypothetical protein CTRG_03151 [Candida tropicalis MYA-3404]
gi|240133170|gb|EER32726.1| hypothetical protein CTRG_03151 [Candida tropicalis MYA-3404]
Length = 400
Score = 34.8 bits (78), Expect = 3.6, Method: Composition-based stats.
Identities = 16/143 (11%), Positives = 29/143 (20%), Gaps = 33/143 (23%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES------- 61
L + + ++AGD N +NS ++ S
Sbjct: 259 LNGFIQE--DEDAYVLLAGDLNSTLNSSVIRILSSSGVNVSDCFSFKNYNYGSNNCLVDK 316
Query: 62 ------------------------TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD 97
+ LD+ + SY
Sbjct: 317 NGDIKNPFNFQSVYQPLISSNSLQFTSHTTGYSGILDHIFASKTKFQVNRLLGGVDKSYI 376
Query: 98 QSDLDTRRSKLSTHCPLTIEYDF 120
+ S H P+ E +
Sbjct: 377 AKNGFPDAQFPSDHIPIAAEISY 399
>gi|222616780|gb|EEE52912.1| hypothetical protein OsJ_35521 [Oryza sativa Japonica Group]
Length = 1003
Score = 34.8 bits (78), Expect = 3.6, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 32/115 (27%), Gaps = 10/115 (8%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE------KEST 62
L + P+ + GDFN + + +K
Sbjct: 198 LLRRIKPNSTA--PWCLMGDFNEAMWQFEHFSEHKRKEKQMLDFREILSHCDVFDLGFIG 255
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
NK Y + + S+S++ S+ S HCP+ ++
Sbjct: 256 TPWTYDNKRKGGY-NVRVRLDRAVASQSWSVLYPQAQVRHLVSSR-SDHCPILVQ 308
>gi|116619520|ref|YP_821676.1| endonuclease/exonuclease/phosphatase [Candidatus Solibacter
usitatus Ellin6076]
gi|116222682|gb|ABJ81391.1| Endonuclease/exonuclease/phosphatase [Candidatus Solibacter
usitatus Ellin6076]
Length = 234
Score = 34.8 bits (78), Expect = 3.6, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 27/119 (22%), Gaps = 20/119 (16%)
Query: 3 SQQGEWL-KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QG L I P V+ GDFN + ++
Sbjct: 135 RHQGRRLVAAELLGDIALDSPRVLIGDFN--------------EWTRGLATKLLRSHMKT 180
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + D + S+ S H PL ++
Sbjct: 181 ANFRWRSYPG----LLPVLHLDHIYYDPALSLHRVQVHRSPLSLL-ASDHLPLFADFKL 234
>gi|53793522|dbj|BAD54683.1| putative inositol polyphosphate 5-phosphatase II [Oryza sativa
Japonica Group]
Length = 472
Score = 34.8 bits (78), Expect = 3.6, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 30/121 (24%), Gaps = 5/121 (4%)
Query: 3 SQQGEW---LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
+Q W L D V ++ + S T + G
Sbjct: 328 RRQIFWFGDLNYRIDMPDAEIRDLVSMKRWDDLLKSDQLTKELTNGNTFAGWKEGLINFP 387
Query: 60 ESTCN--VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + V ++ + + + Q + LS H P++
Sbjct: 388 PTYKYETNSSKYVGEKPDEVGNKRSPAWCDRILWLGKGIKQLSYWSSGLNLSDHRPVSST 447
Query: 118 Y 118
+
Sbjct: 448 F 448
>gi|238759151|ref|ZP_04620319.1| hypothetical protein yaldo0001_25150 [Yersinia aldovae ATCC 35236]
gi|238702567|gb|EEP95116.1| hypothetical protein yaldo0001_25150 [Yersinia aldovae ATCC 35236]
Length = 253
Score = 34.8 bits (78), Expect = 3.7, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 21/107 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q P ++AGDFN Q+++ + +E R+++
Sbjct: 168 EQIALHRGPVILAGDFNA---------WSRQRVNALQRFAQGSGLEEVAFRADNRSRAFG 218
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +D ++ S H PL +E+
Sbjct: 219 RPL------------DFVFYRGLSVADASVLVTRASDHNPLLVEFQL 253
>gi|166367334|ref|YP_001659607.1| hypothetical protein MAE_45930 [Microcystis aeruginosa NIES-843]
gi|166089707|dbj|BAG04415.1| hypothetical protein MAE_45930 [Microcystis aeruginosa NIES-843]
Length = 260
Score = 34.8 bits (78), Expect = 3.7, Method: Composition-based stats.
Identities = 11/121 (9%), Positives = 26/121 (21%), Gaps = 15/121 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-----QKMDPDGLLIRFPQEKE 60
+ +++ Q T + GDFN + K+ + ++
Sbjct: 150 AKCIQERFCQLDLTKDYLFLTGDFNVNSQQLPRQILTQPLQPEIKLKDALADLELAEQMS 209
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ D+ + S H P+ +
Sbjct: 210 FNNYTDTPYLA----------IDTIYYDSRLQLDWAKVDPSRWLNLIPSDHYPVIAAFTL 259
Query: 121 E 121
Sbjct: 260 P 260
>gi|156324991|ref|XP_001618531.1| hypothetical protein NEMVEDRAFT_v1g154278 [Nematostella vectensis]
gi|156199233|gb|EDO26431.1| predicted protein [Nematostella vectensis]
Length = 328
Score = 34.8 bits (78), Expect = 3.7, Method: Composition-based stats.
Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 21/125 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINS--------IGDTDDFWQKM-------DPDGLLIRFPQ 57
D + T +I GDFN N+ ++ D +
Sbjct: 124 LDPYLATKNYNIIGGDFNCITNTRLDKLGGNPDARQTANTELYTIAAKHDLTDIWRDRNP 183
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + D +I F+++ + + V ++ + + S H +T+
Sbjct: 184 DTRGFTWTGRH---PTDNTIIRTRIDKFMVNKAMTHV---ITNTEIKPYAHSDHDSITMT 237
Query: 118 YDFEK 122
DF +
Sbjct: 238 LDFGQ 242
>gi|147770314|emb|CAN73640.1| hypothetical protein VITISV_043180 [Vitis vinifera]
Length = 719
Score = 34.8 bits (78), Expect = 3.7, Method: Composition-based stats.
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 15/104 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ + GDFN + + + ++ D L+ P + N
Sbjct: 592 EDPWCLGGDFNITLFQRERSSQRRINLAMRRFAEIVDDLGLVDLPLQGGEFTWNGGHNNQ 651
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
FL+ S+ + + +S H P+
Sbjct: 652 ------AWARLDKFLVSPSW-LDQFSGITQSRLPRPISDHFPII 688
>gi|77360510|ref|YP_340085.1| hypothetical protein PSHAa1569 [Pseudoalteromonas haloplanktis
TAC125]
gi|76875421|emb|CAI86642.1| putative orphan protein [Pseudoalteromonas haloplanktis TAC125]
Length = 390
Score = 34.8 bits (78), Expect = 3.7, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 28/117 (23%), Gaps = 12/117 (10%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ FVI GD N ++ L+ + + S +
Sbjct: 274 LNAQSRFVILGDLNAAPEGDKQRTITTDQLLKHPLVNASFIPQSAGAKEQYPQHSHAKNY 333
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDT------------RRSKLSTHCPLTIEYDFE 121
+ + S + + R+ S H + ++ E
Sbjct: 334 SASWQARVDYVLPSHYGLKIIDGGVFWPTKNSQLYRLIKDRNASSDHRLVWLDLRLE 390
>gi|326789876|ref|YP_004307697.1| endonuclease/exonuclease/phosphatase [Clostridium lentocellum DSM
5427]
gi|326540640|gb|ADZ82499.1| Endonuclease/exonuclease/phosphatase [Clostridium lentocellum DSM
5427]
Length = 263
Score = 34.8 bits (78), Expect = 3.7, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 30/108 (27%), Gaps = 2/108 (1%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+ K+ + GDFN N D+ + + + V +
Sbjct: 158 LNAKLHPKRRAFLLGDFNNNANVRDKGYDYMLGLGWKDTYMLAKDKDNGVT-VQGKIHGW 216
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + S + ++ +S H + +E +
Sbjct: 217 EENAG-GLRLDYIFTNQKVEVRSSKVIFNGSNKAVISDHHGVQVEIEL 263
>gi|296140635|ref|YP_003647878.1| endonuclease/exonuclease/phosphatase [Tsukamurella paurometabola
DSM 20162]
gi|296028769|gb|ADG79539.1| Endonuclease/exonuclease/phosphatase [Tsukamurella paurometabola
DSM 20162]
Length = 396
Score = 34.8 bits (78), Expect = 3.7, Method: Composition-based stats.
Identities = 11/118 (9%), Positives = 21/118 (17%), Gaps = 16/118 (13%)
Query: 17 IKTGIPFVIAGDFNRKINSIG--------DTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
+ G PFV+ GD N D +
Sbjct: 276 LPAGEPFVLLGDQNSDPEDGDSVPGAMQQVLDLTQDPKPTSEGAEQAGAGSNHRTPSRYD 335
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR--------SKLSTHCPLTIEY 118
+ L ++ + S H + ++
Sbjct: 336 TADFSKPTPGNLRVDYVLPSKGLTVAGTGVFWPAAGQPGAELMPPRTSSDHRLVWLDL 393
>gi|206579771|ref|YP_002240308.1| endonuclease/exonuclease/phosphatase family protein [Klebsiella
pneumoniae 342]
gi|290509923|ref|ZP_06549293.1| hypothetical protein HMPREF0485_01693 [Klebsiella sp. 1_1_55]
gi|226706238|sp|B5Y1G7|Y4510_KLEP3 RecName: Full=UPF0294 protein KPK_4510
gi|206568829|gb|ACI10605.1| endonuclease/exonuclease/phosphatase family protein [Klebsiella
pneumoniae 342]
gi|289776639|gb|EFD84637.1| hypothetical protein HMPREF0485_01693 [Klebsiella sp. 1_1_55]
Length = 265
Score = 34.8 bits (78), Expect = 3.7, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN +M+ R +E + +R ++
Sbjct: 176 DQIAHHSGPVIMAGDFNA---------WSRPRMNALYRFAREMSLREVRFSDDQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D ++ S H PL +E+
Sbjct: 227 RPL------------DFVFYRGLSVHDASVLVTRASDHNPLLVEFS 260
>gi|198244210|ref|YP_002214214.1| hypothetical protein SeD_A0281 [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|226708933|sp|B5FJ53|YAFD_SALDC RecName: Full=UPF0294 protein yafD
gi|197938726|gb|ACH76059.1| protein YafD [Salmonella enterica subsp. enterica serovar Dublin
str. CT_02021853]
Length = 266
Score = 34.8 bits (78), Expect = 3.7, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R ++
Sbjct: 176 DQIAHHSGPVIMAGDFNAW--SRPRMNALYRFAREMSLRQVRFTD-------DQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 227 RPLDFVFYRGLNVNEASVLVT------------RASDHNPLLVEFS 260
>gi|125557414|gb|EAZ02950.1| hypothetical protein OsI_25090 [Oryza sativa Indica Group]
Length = 577
Score = 34.8 bits (78), Expect = 3.7, Method: Composition-based stats.
Identities = 7/72 (9%), Positives = 15/72 (20%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + R + R + + +Q
Sbjct: 457 RVFQGWKEGRIYFPPTYKYSFNSDRYAGEGMHPKEKRRTPAWCDRILWYGNGLNQLCYVR 516
Query: 104 RRSKLSTHCPLT 115
S+ S H P+
Sbjct: 517 GESRFSDHRPVY 528
>gi|86142990|ref|ZP_01061412.1| Endonuclease/exonuclease/phosphatase [Leeuwenhoekiella blandensis
MED217]
gi|85830435|gb|EAQ48894.1| Endonuclease/exonuclease/phosphatase [Leeuwenhoekiella blandensis
MED217]
Length = 362
Score = 34.8 bits (78), Expect = 3.7, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 26/107 (24%), Gaps = 16/107 (14%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
IP ++ GDFN + Q L+ + N S +
Sbjct: 236 RNKQIPVLVIGDFNDVA-----WSESTQLYKEVSELLDLRIGRGLF------NTFSANSK 284
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
++ + + F S H P E E
Sbjct: 285 IMRWPLDHIFVSEHFRAKEV-----LRGNDVGSDHFPAYAELTLESD 326
>gi|239930089|ref|ZP_04687042.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
gi|291438427|ref|ZP_06577817.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
gi|291341322|gb|EFE68278.1| integral membrane protein [Streptomyces ghanaensis ATCC 14672]
Length = 332
Score = 34.8 bits (78), Expect = 3.7, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 25/97 (25%), Gaps = 14/97 (14%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
V+AGDFN + + L + + + +
Sbjct: 246 VLAGDFNASQDHAAFRRILDTGLRDATRLDGADR---TPTWPARTAPAF------GVQID 296
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ L+ F+ DL H L ++
Sbjct: 297 HVLVSEEFTARRARFLDLADT-----DHRALVVDLTL 328
>gi|161504022|ref|YP_001571134.1| hypothetical protein SARI_02115 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160865369|gb|ABX21992.1| hypothetical protein SARI_02115 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 97
Score = 34.8 bits (78), Expect = 3.7, Method: Composition-based stats.
Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 16/112 (14%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L W + + P ++AGDFN ++ +E R
Sbjct: 2 LAGWVNA-LPESEPVLVAGDFNDWRQ-------------RANPPLKAAGLEEIFTRAHGR 47
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + N+ S + LS H PL+ E
Sbjct: 48 PARTFPVSMPLLRLDRIYVKNA--NASSPTALPLRNWRHLSDHAPLSAEIHL 97
>gi|154507757|ref|ZP_02043399.1| hypothetical protein ACTODO_00239 [Actinomyces odontolyticus ATCC
17982]
gi|153797391|gb|EDN79811.1| hypothetical protein ACTODO_00239 [Actinomyces odontolyticus ATCC
17982]
Length = 474
Score = 34.8 bits (78), Expect = 3.7, Method: Composition-based stats.
Identities = 12/133 (9%), Positives = 24/133 (18%), Gaps = 26/133 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST-------------- 62
+ T FVI GD+N ++ ++ +
Sbjct: 280 LSTDANFVILGDYNSDPLDGDSYPGAIDQLLTSPRIVDTMPTSQGGPSEAKLQGGANLKH 339
Query: 63 -CNVIKRNKSSLDYFVIDR-DNKNFLIDNSFSIVSYDQSDLDTRRS----------KLST 110
+ D L + + S
Sbjct: 340 KTDPKYDTGDFNDDPRPGNLRIDYVLPNTGTQVDEAQVFWPTRDDELFRLTGLHPFPTSD 399
Query: 111 HCPLTIEYDFEKG 123
H + + F
Sbjct: 400 HRMVWTKLRFPAA 412
>gi|159574|gb|AAA29354.1| reverse transcriptase-like protein [Aedes aegypti]
Length = 882
Score = 34.8 bits (78), Expect = 3.7, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 38/121 (31%), Gaps = 20/121 (16%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK-----MDPDGLLIRFPQE 58
QQ L+ + + F + GDFN K S ++ G +
Sbjct: 113 QQVNLLQTDLRKLTRNKSKFFVIGDFNAKHRSWNNSQSNSNGRILFDECSSGYFSIQYPD 172
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ C RN S++D + D + + +D S H P+T +
Sbjct: 173 SPT-CFSSSRNPSTIDLVLTDSSHL---CSQLITHADFD-----------SDHVPVTFQI 217
Query: 119 D 119
Sbjct: 218 S 218
>gi|116199715|ref|XP_001225669.1| hypothetical protein CHGG_08013 [Chaetomium globosum CBS 148.51]
gi|88179292|gb|EAQ86760.1| hypothetical protein CHGG_08013 [Chaetomium globosum CBS 148.51]
Length = 1173
Score = 34.8 bits (78), Expect = 3.7, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 29/114 (25%), Gaps = 11/114 (9%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKI---NSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L + + P V+AGDFN + G + + + L +
Sbjct: 530 LLQTLLSRPAPAYPVVLAGDFNLHHPQWDRFGRYERKAEALLELALQWDLDLRTPAGTIT 589
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+F Y R K S H P +E D
Sbjct: 590 R---APQGAQRGRTSTIDHFWASVGLQTTYYG----LEYRGK-SDHYPQILEAD 635
>gi|301348250|ref|ZP_07228991.1| Endonuclease/Exonuclease/phosphatase family protein [Acinetobacter
baumannii AB056]
Length = 162
Score = 34.8 bits (78), Expect = 3.8, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 39/137 (28%), Gaps = 29/137 (21%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGD--------------------TDDFWQK 45
E L+ + ++ ++ GD+N + + W+
Sbjct: 24 AERLRVNIEDELNETKNIILVGDYNVEPYDPAVVHQLQSSREKTIVSKKPNVFYNPCWKF 83
Query: 46 MDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD----- 100
+ P L + + + + + + + + +
Sbjct: 84 LVPSFQLKSLNTH---GTYYYANGQFHHWHVIDQIMFSSNFLSDEWDLQDKYINIVNLTN 140
Query: 101 -LDTRRSKLSTHCPLTI 116
+T++S LS H PL+
Sbjct: 141 LDNTQKSLLSDHHPLSA 157
>gi|297604820|ref|NP_001056157.2| Os05g0535600 [Oryza sativa Japonica Group]
gi|255676526|dbj|BAF18071.2| Os05g0535600 [Oryza sativa Japonica Group]
Length = 651
Score = 34.8 bits (78), Expect = 3.8, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 26/110 (23%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L + + + D++ + + + DG + +
Sbjct: 509 LNYRINLSYERAHELISKQDWDGLFENDQLKRELSKGHTFDGWIEGDISFPPTYKYEFDS 568
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K D R + KLS H P+T +
Sbjct: 569 EKYVSDEPKSGRRTPAWCDRILSRGKGIRLISYRRGELKLSDHRPVTAVF 618
>gi|116670945|ref|YP_831878.1| endonuclease/exonuclease/phosphatase [Arthrobacter sp. FB24]
gi|116611054|gb|ABK03778.1| Endonuclease/exonuclease/phosphatase [Arthrobacter sp. FB24]
Length = 341
Score = 34.8 bits (78), Expect = 3.8, Method: Composition-based stats.
Identities = 8/100 (8%), Positives = 21/100 (21%), Gaps = 9/100 (9%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN + D ++ + +
Sbjct: 250 LLIGDFNATYDHAEFRALLDVGPDGRKMVDVGTAAGLRLEPTWP----MEGHRLPGIAID 305
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + + Y + + H + G
Sbjct: 306 HLVTSPGIAASGYAVHRVP-----GTDHAAVLATLSLPTG 340
>gi|269796550|ref|YP_003316005.1| metal-dependent hydrolase [Sanguibacter keddieii DSM 10542]
gi|269098735|gb|ACZ23171.1| metal-dependent hydrolase [Sanguibacter keddieii DSM 10542]
Length = 251
Score = 34.8 bits (78), Expect = 3.8, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 17/103 (16%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ V+AGD N + WQ + LL E R
Sbjct: 161 ERAGAHRCVVAGDLNEEPG-----GPSWQALGS--LLRDAVPEAPGLTFAAPR------- 206
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R L+ + F ++S + S H PL +E
Sbjct: 207 --PVRRIDGVLVGDGFEVLSSTVLRTPA-ALRGSDHLPLLVEL 246
>gi|262197113|ref|YP_003268322.1| endonuclease/exonuclease/phosphatase [Haliangium ochraceum DSM
14365]
gi|262080460|gb|ACY16429.1| Endonuclease/exonuclease/phosphatase [Haliangium ochraceum DSM
14365]
Length = 247
Score = 34.8 bits (78), Expect = 3.8, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 28/117 (23%), Gaps = 25/117 (21%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L +Q T +P ++ GDFN + + + F
Sbjct: 152 QVYRLLDHINQ--DTELPTLLLGDFN---------EWSRHGLVTRAVEEHFATHAPLASY 200
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNS--FSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S V + L + S H P+ E
Sbjct: 201 P---------AVLPIVPLDRIFWRPSGLVERVYRARGTLFR---RASDHRPVIAELR 245
>gi|192360058|ref|YP_001983982.1| catabolite repression control protein [Cellvibrio japonicus
Ueda107]
gi|190686223|gb|ACE83901.1| catabolite repression control protein [Cellvibrio japonicus
Ueda107]
Length = 256
Score = 34.8 bits (78), Expect = 3.8, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 37/132 (28%), Gaps = 27/132 (20%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTD-------------------DFWQKMDPDG 50
+ D+ + +V G++ ++ + ++
Sbjct: 131 QAHLDKITRKRREYVFCGNWQMAHTPKDVSNSTENQHNSGFLPHERQWLSQLFNQIGYVD 190
Query: 51 LLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSF-SIVSYDQSDLDTRRSKLS 109
+ ++ + S ++ NS V Y + + S
Sbjct: 191 AFRKVNKDADEYSWW----PSGAKGEGDGWRTDFQVVSNSLGHKVEYATIY---KTQQFS 243
Query: 110 THCPLTIEYDFE 121
+H P+ I+YD E
Sbjct: 244 SHLPVIIDYDIE 255
>gi|171778868|ref|ZP_02919930.1| hypothetical protein STRINF_00789 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282514|gb|EDT47938.1| hypothetical protein STRINF_00789 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 271
Score = 34.8 bits (78), Expect = 3.8, Method: Composition-based stats.
Identities = 13/107 (12%), Positives = 25/107 (23%), Gaps = 2/107 (1%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
P V+ GDFN D + + + +I+
Sbjct: 167 KALSDFPKPLVLMGDFN-NPTDTAGYDMILNSPLELQDSHKVAKSIQGDHTIIEDIDGWE 225
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ I S +S H L ++ ++
Sbjct: 226 GNK-QSLKVDHVFTSKEIEIQSSTVVFDGGESPIVSDHFGLAVDLNY 271
>gi|206974292|ref|ZP_03235209.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus H3081.97]
gi|217957955|ref|YP_002336499.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus AH187]
gi|222094154|ref|YP_002528211.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus Q1]
gi|229137219|ref|ZP_04265836.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST26]
gi|206747532|gb|EDZ58922.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus H3081.97]
gi|217066613|gb|ACJ80863.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus AH187]
gi|221238209|gb|ACM10919.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
cereus Q1]
gi|228646214|gb|EEL02431.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus BDRD-ST26]
Length = 263
Score = 34.8 bits (78), Expect = 3.8, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 10/120 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q L + D + + GDFN ++ G + + L +
Sbjct: 151 FKDQVNRLMERVD----SNELSFLMGDFNNNARLQGEGYEYMMQKGLYDTYGLAI----E 202
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++ + D + L + S + S T R+ +S H + ++ D
Sbjct: 203 KDEGTTVQGEIAGWDENKHNLRIDLILCNRSEKVCSSKVIFNGTNRNIISDHFGVEVQVD 262
>gi|159036780|ref|YP_001536033.1| endonuclease/exonuclease/phosphatase [Salinispora arenicola
CNS-205]
gi|157915615|gb|ABV97042.1| Endonuclease/exonuclease/phosphatase [Salinispora arenicola
CNS-205]
Length = 328
Score = 34.8 bits (78), Expect = 3.8, Method: Composition-based stats.
Identities = 11/104 (10%), Positives = 23/104 (22%), Gaps = 13/104 (12%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
G ++AGDFN ++ +D + + +
Sbjct: 235 PDGQLRILAGDFNATLD----HAPLRALLDTGYVDAADAAGTGLIGTWGPYDGDPIPPVA 290
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
ID + + S H + +
Sbjct: 291 IDHVLVDRRVA---------VRATAVYAIPGSDHRAVFTDLRLP 325
>gi|114587566|ref|XP_001174027.1| PREDICTED: deoxyribonuclease I-like 3 isoform 1 [Pan troglodytes]
Length = 288
Score = 34.8 bits (78), Expect = 3.8, Method: Composition-based stats.
Identities = 12/92 (13%), Positives = 32/92 (34%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ F+ GDFN + + ++ D + ++E T N +
Sbjct: 176 KHRWKAENFIFMGDFNAGCSYVPKKAWKNIRLRTDPRFVWLIGDQEDTTVKKSTNCAYDR 235
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ ++ + ++ S S+ + ++ T
Sbjct: 236 IVLRGQEIVSSVVPKSNSVFDFQKAYKLTEEE 267
>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
Length = 1874
Score = 34.8 bits (78), Expect = 3.8, Method: Composition-based stats.
Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 4/106 (3%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE----STCNVIKRNKS 71
+ +G P+++ GDFN + + E + +
Sbjct: 80 RSNSGDPWLMIGDFNEAMWQTEHKSHRKRSESQMRDFREVLSECDLHDIGFQGAPWTFCN 139
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + + + Q+ + + S H PL +E
Sbjct: 140 MQREGRNVKVRLDRGVASPAWSSRFPQAVITHLTTPSSDHAPLLLE 185
>gi|294627673|ref|ZP_06706255.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294667101|ref|ZP_06732326.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292598025|gb|EFF42180.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292603111|gb|EFF46537.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 255
Score = 34.8 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 10/112 (8%), Positives = 28/112 (25%), Gaps = 21/112 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + ++ GDFN + + P + R
Sbjct: 161 AFIAELLSDHPNAMLMGDFNCMADRPEMQSLY-------RHTRLQPPSCDVHTFPSWRPD 213
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
++D+ ++ + + S H + ++ K
Sbjct: 214 RAIDHILVSDSL--------------VIEHTEAIPAAFSDHLAVGMDIRVPK 251
>gi|257867010|ref|ZP_05646663.1| endonuclease/exonuclease/phosphatase [Enterococcus casseliflavus
EC30]
gi|257873344|ref|ZP_05652997.1| endonuclease/exonuclease/phosphatase [Enterococcus casseliflavus
EC10]
gi|257801066|gb|EEV29996.1| endonuclease/exonuclease/phosphatase [Enterococcus casseliflavus
EC30]
gi|257807508|gb|EEV36330.1| endonuclease/exonuclease/phosphatase [Enterococcus casseliflavus
EC10]
Length = 276
Score = 34.8 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 30/115 (26%), Gaps = 8/115 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E + ++ T +I GDFN S G + + +
Sbjct: 163 QQTEA---FLAERADT---LLILGDFNNDAASSGHQLVLDSSLQLQDSFLTAAETIGEAS 216
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
V D Y+ TR +S H + + +
Sbjct: 217 VVK-AIDGWQDNR-EALRIDYVFTSKDLQATEYEVVFDGTRTPIVSDHFGIKVVF 269
>gi|77553854|gb|ABA96650.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1100
Score = 34.8 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 32/115 (27%), Gaps = 10/115 (8%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE------KEST 62
L + P+ + GDFN + + +K
Sbjct: 232 LLRRIKPNSTA--PWCLMGDFNEAMWQFEHFSEHKRKEKQMLDFREILSHCDVFDLGFIG 289
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
NK Y + + S+S++ S+ S HCP+ ++
Sbjct: 290 TPWTYDNKRKGGY-NVRVRLDRAVASQSWSVLYPQAQVRHLVSSR-SDHCPILVQ 342
>gi|241765944|ref|ZP_04763871.1| Endonuclease/exonuclease/phosphatase [Acidovorax delafieldii 2AN]
gi|241364094|gb|EER59319.1| Endonuclease/exonuclease/phosphatase [Acidovorax delafieldii 2AN]
Length = 255
Score = 34.8 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 32/116 (27%), Gaps = 15/116 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + + + P V+AGDFN N + + ++
Sbjct: 153 QRQLQCVCELVHG-LPADEPVVLAGDFNDWRN--RAHGVLLRGAGLQEVFVQA------- 202
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + + + N+ KLS H PL E
Sbjct: 203 ---TGRPVRTFPAALPLLALDRIYVRNAAVHAPLALPKTPWN--KLSDHAPLAAEI 253
>gi|238755079|ref|ZP_04616426.1| hypothetical protein yruck0001_22720 [Yersinia ruckeri ATCC 29473]
gi|238706639|gb|EEP99009.1| hypothetical protein yruck0001_22720 [Yersinia ruckeri ATCC 29473]
Length = 266
Score = 34.8 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 15/107 (14%), Positives = 27/107 (25%), Gaps = 21/107 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+Q P ++AGDFN + Q + +
Sbjct: 181 EQISMHRGPVILAGDFNA---------------WSRQRIRALQQFSKKVGLSEVEFLADN 225
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
R +D + ++ S H PL +E+
Sbjct: 226 RSRAFGRPLDYVFYRE------LKVADAEVLVTRASDHNPLWVEFKL 266
>gi|222632363|gb|EEE64495.1| hypothetical protein OsJ_19345 [Oryza sativa Japonica Group]
Length = 671
Score = 34.8 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 26/110 (23%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L + + + D++ + + + DG + +
Sbjct: 527 LNYRINLSYERAHELISKQDWDGLFENDQLKRELSKGHTFDGWIEGDISFPPTYKYEFDS 586
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K D R + KLS H P+T +
Sbjct: 587 EKYVSDEPKSGRRTPAWCDRILSRGKGIRLISYRRGELKLSDHRPVTAVF 636
>gi|167033635|ref|YP_001668866.1| endonuclease/exonuclease/phosphatase [Pseudomonas putida GB-1]
gi|166860123|gb|ABY98530.1| Endonuclease/exonuclease/phosphatase [Pseudomonas putida GB-1]
Length = 257
Score = 34.8 bits (78), Expect = 3.9, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 21/118 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + + P ++AGDFN + + L+ F + S
Sbjct: 161 QRQVTLMLDLLAS-LPPQAPVIVAGDFND-------WRLKADAVLCEHLIEAFGKPARSF 212
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + N+ + S S LS H PL E +
Sbjct: 213 P-----------ARLPLLRLDRIYLRNAVPGAAQVLSKYPW--SHLSDHVPLAAEINL 257
>gi|289662605|ref|ZP_06484186.1| hypothetical protein XcampvN_05822 [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 255
Score = 34.8 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 12/109 (11%), Positives = 28/109 (25%), Gaps = 21/109 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + ++ GDFN + Q + L E + +
Sbjct: 161 AFIAELLSDHPNAMLMGDFNCMAD-----RPEMQSLYRHTRLQPPSCEVHTFPSWRPDRA 215
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ L+ +S I + S H + ++
Sbjct: 216 -----------IDHILVSDSLVIEHTEAIPAAF-----SDHLAVGMDIR 248
>gi|262037299|ref|ZP_06010773.1| metal-dependent hydrolase [Leptotrichia goodfellowii F0264]
gi|261748682|gb|EEY36047.1| metal-dependent hydrolase [Leptotrichia goodfellowii F0264]
Length = 263
Score = 34.8 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 4/111 (3%)
Query: 11 KWADQKIKTGIPFVIAGDFN-RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
+ ++ +T ++ GDFN INS D + D EK+S V
Sbjct: 156 QRILKRSQTDNLKILMGDFNTDAINSPEDYKMILSQGLYDTYTAAI--EKDSGITVGGNI 213
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
D+ + ++S +S H L + D
Sbjct: 214 DGWSKNK-EDKRIDYIFSNKKIKVLSSKVIFNGKNHPVVSDHYGLEVILDM 263
>gi|109390619|emb|CAJ13336.1| pol protein [Drosophila mauritiana]
Length = 1042
Score = 34.8 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 33/111 (29%), Gaps = 6/111 (5%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+A++ + F++ GD+N K G T + + +
Sbjct: 98 NFAEKTLGGQTKFILCGDWNAKHRQWGSTRACQRGTALYEAVQADSMAEIIATGCATHFP 157
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
D + + + + +R S H P+ +E + +
Sbjct: 158 --HDTRKNPSAIDFSIC----KGLGRFEKRISSRADLSSDHLPILLEINLD 202
>gi|312222242|emb|CBY02182.1| similar to endonuclease/exonuclease/phosphatase family protein
[Leptosphaeria maculans]
Length = 327
Score = 34.8 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 12/108 (11%), Positives = 29/108 (26%), Gaps = 15/108 (13%)
Query: 18 KTGIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ +PF ++GD N +I+ + D L + + D
Sbjct: 205 RDRLPFFLSGDLNSEIDGEAYQILNNSTASTQDAKDLAKWRYGDTNTFT-------DFGD 257
Query: 75 YFVIDRDNKNFLIDN----SFSIVSYDQ-SDLDTRRSKLSTHCPLTIE 117
+ ++ + Y + S H + ++
Sbjct: 258 NEKRFTLIDFVFVGPRGGTNWDVEGYSVLPNKFEDGVFSSDHRAVVVD 305
>gi|152968799|ref|YP_001333908.1| hypothetical protein KPN_00224 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150953648|gb|ABR75678.1| hypothetical protein KPN_00224 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 258
Score = 34.8 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN +M+ R +E + +R ++
Sbjct: 169 DQIAHHSGPVIMAGDFNA---------WSRPRMNALYRFAREMSLREVRFSDDQRRRAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D ++ S H PL +E+
Sbjct: 220 RPL------------DFVFYRGLSVHDASVLVTRASDHNPLLVEFS 253
>gi|116200556|ref|XP_001226090.1| hypothetical protein CHGG_10823 [Chaetomium globosum CBS 148.51]
gi|88175537|gb|EAQ83005.1| hypothetical protein CHGG_10823 [Chaetomium globosum CBS 148.51]
Length = 484
Score = 34.8 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 27/112 (24%), Gaps = 11/112 (9%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKI---NSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L + + G P +AGDFN + G + + + + +
Sbjct: 65 LLQSLLSRQAPGYPTALAGDFNLHHPLWDQHGRYERKAETLLELAVQWDLDLRTPTGTMT 124
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+F Y + S H P +E
Sbjct: 125 R---APQGSQRGPTSTIDHFWATVGLQTTYYG-----LEQRGKSDHYPQVLE 168
>gi|332322102|emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 34.8 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 14/111 (12%)
Query: 18 KTGIPFVIAGDFNRKINSIG---------DTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
G P+++AGD N ++ + + L+ + R
Sbjct: 129 PRGTPWLVAGDMNEVLHGNEKMGGRQVGKEQGKQCKDWIAANALLDLGFQGPKFTWTNGR 188
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+I L+++ + + + + + S HCPL I ++
Sbjct: 189 TGG----SLIKERLDRALVNSEWLDL-FPDTKVIHLPRTFSDHCPLLILFN 234
>gi|319654834|ref|ZP_08008910.1| hypothetical protein HMPREF1013_05532 [Bacillus sp. 2_A_57_CT2]
gi|317393552|gb|EFV74314.1| hypothetical protein HMPREF1013_05532 [Bacillus sp. 2_A_57_CT2]
Length = 237
Score = 34.8 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 13/109 (11%)
Query: 21 IPFVIAGDFNRKIN---------SIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P VIAGD+N N + K + +E
Sbjct: 129 EPCVIAGDWNSNKNFNHIRRVGTHTDVVNLLKSKGITSTYHHFYNEEHGVESQPTHY--- 185
Query: 72 SLDYFVIDRDNKNFLIDNSF-SIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S ++ + KLS H PL +++
Sbjct: 186 FRKEYARPFHIDYIFTSKDILSSLNKMEVGKHENWIKLSDHMPLLTDFN 234
>gi|21911431|gb|AAM80554.1| StaP [Streptomyces toyocaensis]
Length = 280
Score = 34.8 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 11/104 (10%), Positives = 27/104 (25%), Gaps = 19/104 (18%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+ ++ GDFN ++ Q + + K + +D
Sbjct: 196 AERSKRVLVLGDFNGTLDDRAFDGLTSQLRSSQDVA----GDGFGFSWPAKFPVARIDQI 251
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++ + S ++ S H P+ +
Sbjct: 252 LVRG-----VEPTSAWLLPR----------TGSDHRPVAARISW 280
>gi|15807284|ref|NP_296014.1| hypothetical protein DR_2293 [Deinococcus radiodurans R1]
gi|6460101|gb|AAF11839.1|AE002061_6 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 322
Score = 34.8 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 31/120 (25%), Gaps = 23/120 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L + P ++ GD N ++++ + +
Sbjct: 226 REQVALLCR-IAAHEPG--PVLLGGDLNTPPRGR-----LYRRLTGCFGPDAHDRAGQGP 277
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+D+ ++ + S H PL +EY + +
Sbjct: 278 GWTFPGLLLRIDHLLVRD----------LRPTRARVLSMA-----GSDHRPLLVEYRWGR 322
>gi|65317801|ref|ZP_00390760.1| COG3568: Metal-dependent hydrolase [Bacillus anthracis str. A2012]
Length = 263
Score = 34.8 bits (78), Expect = 4.0, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 6/119 (5%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ Q L + D + + GDFN G+ ++ + ++ E
Sbjct: 150 LFKGQVNRLMERVD----SNELSFLMGDFNNNARLQGEGYEYMMQEGLYDTYELAIEKDE 205
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
T + + D + L + S I S T R +S H + + D
Sbjct: 206 GTTV--QGEIAGWDENKHNLRIDLILCNRSEKIRSSKVVFNGTNRKIISDHFGVEVXVD 262
>gi|326664783|ref|XP_003197885.1| PREDICTED: transposon TX1 uncharacterized 149 kDa protein-like
[Danio rerio]
Length = 1148
Score = 34.8 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 28/130 (21%), Gaps = 27/130 (20%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------DDFWQKMDPDGLLI 53
E L+ + P V+AGDFN + + +
Sbjct: 131 ELLED-LQPHMLGKPPLVVAGDFNCILTQKDRKKADFKLDKTSTLLNHLVKDFKLVDCFR 189
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ +E + S + D + S H
Sbjct: 190 QVHPREEGFTWFSSDSTS-------ASRIDYIFTR------DFPPVDATLTPTFFSDHTI 236
Query: 114 LTIEYDFEKG 123
L+ G
Sbjct: 237 LSCTLSLPPG 246
>gi|326664774|ref|XP_003197881.1| PREDICTED: transposon TX1 uncharacterized 149 kDa protein-like
[Danio rerio]
Length = 1149
Score = 34.8 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 28/130 (21%), Gaps = 27/130 (20%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDT-------------DDFWQKMDPDGLLI 53
E L+ + P V+AGDFN + + +
Sbjct: 131 ELLED-LQPHMLGKPPLVVAGDFNCILTQKDRKKADFKLDKTSTLLNHLVKDFKLVDCFR 189
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ +E + S + D + S H
Sbjct: 190 QVHPREEGFTWFSSDSTS-------ASRIDYIFTR------DFPPVDATLTPTFFSDHTI 236
Query: 114 LTIEYDFEKG 123
L+ G
Sbjct: 237 LSCTLSLPPG 246
>gi|321450263|gb|EFX62348.1| hypothetical protein DAPPUDRAFT_270568 [Daphnia pulex]
Length = 421
Score = 34.8 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 7/108 (6%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN-KS 71
+ + P+++ GDFN + + + C + N +
Sbjct: 44 IEAMLDRSNPYLLGGDFN---GHHPLWESNATVNKAGKSVYEALINDQDACLITPPNLGT 100
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
LD + I + S R S H P+ I +
Sbjct: 101 RLDPVSGKASTIDLTITAASIATSAKI---TLRSYMGSDHLPIIITLN 145
>gi|157147195|ref|YP_001454514.1| hypothetical protein CKO_02974 [Citrobacter koseri ATCC BAA-895]
gi|157084400|gb|ABV14078.1| hypothetical protein CKO_02974 [Citrobacter koseri ATCC BAA-895]
Length = 259
Score = 34.8 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R ++
Sbjct: 169 DQIAHHSGPVIMAGDFNAW--SRPRMNALYRFAREMSLRQVRFTD-------DQRRRAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 220 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 253
>gi|116200462|ref|XP_001226043.1| hypothetical protein CHGG_10776 [Chaetomium globosum CBS 148.51]
gi|88175490|gb|EAQ82958.1| hypothetical protein CHGG_10776 [Chaetomium globosum CBS 148.51]
Length = 1241
Score = 34.8 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 29/114 (25%), Gaps = 11/114 (9%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKI---NSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV 65
L + + P V+AGDFN + G + + + L +
Sbjct: 516 LLQTLLSRPAPAYPVVLAGDFNLHHPQWDRFGRYERKAEALLELALQWDLDLRTPAGTIT 575
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+F Y R K S H P +E D
Sbjct: 576 R---APQGAQRGRTSTIDHFWASVGLQTTYYG----LEYRGK-SDHYPQILEAD 621
>gi|326621958|gb|EGE28303.1| Endonuclease/exonuclease/phosphatase [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 205
Score = 34.8 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R ++
Sbjct: 115 DQIAHHSGPVIMAGDFNAW--SRPRMNALYRFAREMSLRQVRFTD-------DQRRRAFG 165
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 166 RPLDFVFYRGLNVNEASVLVT------------RASDHNPLLVEFS 199
>gi|321260765|ref|XP_003195102.1| component of the CCR4-NOT transcriptional complex; Ccr4p
[Cryptococcus gattii WM276]
gi|317461575|gb|ADV23315.1| Component of the CCR4-NOT transcriptional complex, putative; Ccr4p
[Cryptococcus gattii WM276]
Length = 745
Score = 34.8 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 28/135 (20%), Gaps = 25/135 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC------- 63
K+ + IP ++ D N S D P
Sbjct: 598 KYERSEKGRDIPLIMCVDLNSFSGS-AVYDYLSSGSIPGDHEDFMSHLYGRYTASGLKHH 656
Query: 64 ----------------NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL-DTRRS 106
N +++DY +Y +
Sbjct: 657 LGLRSACAGIGEMKMTNFTPTFAAAIDYVFYTPRTMKVTSVLGDVDKAYLDKTVGFPNAH 716
Query: 107 KLSTHCPLTIEYDFE 121
S H P+ ++ +
Sbjct: 717 FPSDHIPVFTQFRIK 731
>gi|309800613|ref|ZP_07694757.1| exodeoxyribonuclease III [Streptococcus infantis SK1302]
gi|308115759|gb|EFO53291.1| exodeoxyribonuclease III [Streptococcus infantis SK1302]
Length = 269
Score = 34.8 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 12/103 (11%), Positives = 21/103 (20%), Gaps = 2/103 (1%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ ++AGDFN G +D + S +
Sbjct: 168 LKELNKSLLLAGDFNNPAGQEGYQAILASPLDLQDAYEVAK--ERSGSYTVPPEIDGWKG 225
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ ++S H L E
Sbjct: 226 NSEPLRIDYIFTTKDVQVEKLHVVFDGKNSPQVSDHYGLQAEL 268
>gi|294779283|ref|ZP_06744687.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis PC1.1]
gi|307269655|ref|ZP_07550989.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX4248]
gi|294453650|gb|EFG22048.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis PC1.1]
gi|306514017|gb|EFM82606.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX4248]
gi|315031685|gb|EFT43617.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0017]
gi|315034258|gb|EFT46190.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0027]
gi|323480268|gb|ADX79707.1| endonuclease/Exonuclease/phosphatase family protein [Enterococcus
faecalis 62]
gi|329577503|gb|EGG58944.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1467]
Length = 351
Score = 34.8 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L + Q+ G + GDFN+ + W D
Sbjct: 229 QSKKLAEVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLA 288
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 289 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 345
Query: 116 IEYDFE 121
+E +
Sbjct: 346 MEVGLK 351
>gi|256957121|ref|ZP_05561292.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis DS5]
gi|257077917|ref|ZP_05572278.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis JH1]
gi|256947617|gb|EEU64249.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis DS5]
gi|256985947|gb|EEU73249.1| endonuclease/exonuclease/phosphatase [Enterococcus faecalis JH1]
Length = 358
Score = 34.8 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L + Q+ G + GDFN+ + W D
Sbjct: 236 QSKKLAEVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLA 295
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S D K + H P+
Sbjct: 296 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKDEQ---FKYTDHQPVK 352
Query: 116 IEYDFE 121
+E +
Sbjct: 353 MEVGLK 358
>gi|209695831|ref|YP_002263761.1| hypothetical protein VSAL_I2407 [Aliivibrio salmonicida LFI1238]
gi|208009784|emb|CAQ80091.1| putative nuclease [Aliivibrio salmonicida LFI1238]
Length = 284
Score = 34.8 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 33/121 (27%), Gaps = 25/121 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L+K + P ++AGDFN + + +E
Sbjct: 187 QRQMSDLEKEVKNHVG---PLILAGDFNS-------WSSARLEALDQEVARLRLKEV--- 233
Query: 63 CNVIKRNKSSLDYFVIDR-DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
R + + ++ +S S H PL + + +
Sbjct: 234 -----RFTPDERMIFMTGLPLDHVFYRGLNVKEAHSI------KSNASDHNPLEVSFSLK 282
Query: 122 K 122
+
Sbjct: 283 R 283
>gi|182412293|ref|YP_001817359.1| endonuclease/exonuclease/phosphatase [Opitutus terrae PB90-1]
gi|177839507|gb|ACB73759.1| Endonuclease/exonuclease/phosphatase [Opitutus terrae PB90-1]
Length = 257
Score = 34.8 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 12/113 (10%), Positives = 28/113 (24%), Gaps = 24/113 (21%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRN 69
++ + P +++GDFN + R
Sbjct: 169 RRVVAELAACEGPTLLSGDFNVSGHDALI-----------AQFAPAGFSTVQRTKTTWRR 217
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + + + V + S S H L +++F +
Sbjct: 218 RPYI--------LDHIFYNAPLRAVQHAVSPTL-----ASDHHALVADFEFSE 257
>gi|38346716|emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa Japonica Group]
Length = 1205
Score = 34.8 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 6/109 (5%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP-----QEKESTCNVIKR 68
+ + P+++ GDFN + I Q+ C
Sbjct: 147 ETRSLEEDPWLMIGDFNDAMWQIEHRSRVKHSERQMRDFREVLVECDLQDIGFQCVPWTY 206
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + + + + +DQ+++ + S H PL +E
Sbjct: 207 DNNQASPNNVKVRLDRAVASPVWRAM-FDQANIMHLTTACSDHVPLLLE 254
>gi|66827899|ref|XP_647304.1| hypothetical protein DDB_G0267780 [Dictyostelium discoideum AX4]
gi|60475408|gb|EAL73343.1| hypothetical protein DDB_G0267780 [Dictyostelium discoideum AX4]
Length = 1097
Score = 34.8 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 28/93 (30%), Gaps = 12/93 (12%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+IAGDFN + + +K+ + E R+ LD
Sbjct: 86 IIAGDFNNNHDCNSFFGNELRKIIDRNM--LLDTGIEENTPTFPRSMKRLDRIYCHPTLL 143
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
N +++ S H P+TI
Sbjct: 144 NQNSKLVVHKTVFNK----------SDHFPITI 166
>gi|147866531|emb|CAN81579.1| hypothetical protein VITISV_023185 [Vitis vinifera]
Length = 1232
Score = 34.8 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 30/106 (28%), Gaps = 15/106 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
G P+ + GDFN + + + ++ D L+ P + S
Sbjct: 13 GDPWCLGGDFNITLFQHERSSQRRISSAMRRFAQIVDDLELVDLPLQGGEFTW------S 66
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ S+ S H P+ +E
Sbjct: 67 GGLNNQAWARLDRFLVSPSWLDQFSGV-TQGRLSRPTSDHFPIVLE 111
>gi|110639788|ref|YP_679998.1| endonuclease/exonuclease/phosphatase family protein [Cytophaga
hutchinsonii ATCC 33406]
gi|110282469|gb|ABG60655.1| endonuclease/exonuclease/phosphatase family protein [Cytophaga
hutchinsonii ATCC 33406]
Length = 339
Score = 34.8 bits (78), Expect = 4.1, Method: Composition-based stats.
Identities = 12/117 (10%), Positives = 27/117 (23%), Gaps = 20/117 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + L + ++ GD N ++ + +
Sbjct: 243 QVDTLVGHIK---ASPYKVIVCGDLNDPP-----YSYTYETLSDQLNNAFEEKGNGLGIT 294
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
R + D ++ ++ T H P+ Y F+
Sbjct: 295 FNGR--------LPFLRIDQQFCDQDIEVIRFETQHNITYT----DHFPVKAGYVFK 339
>gi|302530756|ref|ZP_07283098.1| predicted protein [Streptomyces sp. AA4]
gi|302439651|gb|EFL11467.1| predicted protein [Streptomyces sp. AA4]
Length = 317
Score = 34.8 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 27/115 (23%), Gaps = 17/115 (14%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ ++ + + G+ V+AGDFN ++ +
Sbjct: 220 QEMRDLSRAIGEHGLR-VVAGDFNATLDHAALRTVLSRGYVDAAEAR------------- 265
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ L +D+ D S H + E
Sbjct: 266 ---GAGLVPTWSTSAVPLVPLDHVLVDRRVAIRDYRAFDVPGSDHRAVYAEVQLP 317
>gi|163748125|ref|ZP_02155436.1| Endonuclease/exonuclease/phosphatase [Oceanibulbus indolifex
HEL-45]
gi|161378601|gb|EDQ03059.1| Endonuclease/exonuclease/phosphatase [Oceanibulbus indolifex
HEL-45]
Length = 362
Score = 34.8 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 26/112 (23%), Gaps = 18/112 (16%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A + ++ ++AGD N F + + R
Sbjct: 227 AKEMRRSKRAAIVAGDLNDVA--------------WSHTTRLFQRMSGAL---DPRRGRG 269
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-STHCPLTIEYDFEKG 123
+ + + R + S H P+ E +E
Sbjct: 270 MFNSFHAGHQLLRWPLDHIFHDTSFTLVELRRLPNIGSDHFPVFAELQYEPS 321
>gi|39972661|ref|XP_367721.1| hypothetical protein MGG_07632 [Magnaporthe oryzae 70-15]
gi|145016845|gb|EDK01275.1| hypothetical protein MGG_07632 [Magnaporthe oryzae 70-15]
Length = 309
Score = 34.8 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 11/118 (9%), Positives = 26/118 (22%), Gaps = 5/118 (4%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPD--GLLIRFPQEKESTC 63
++ + +P + GDFN D + + + E
Sbjct: 195 VTQIQDMLKAQ-GGKLPVSLTGDFNSVAGGDAAKALADMNFVKDVHDVATKAQRSGEELT 253
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ N + Y+ +S H + + +
Sbjct: 254 YTAFEQGAGRGRIDFVWIGPNADAPYTVQK--YEVRANFVDNLFMSDHRAVVADITMK 309
>gi|84625324|ref|YP_452696.1| hypothetical protein XOO_3667 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84369264|dbj|BAE70422.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 245
Score = 34.8 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 12/109 (11%), Positives = 28/109 (25%), Gaps = 21/109 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + ++ GDFN + Q + L E + +
Sbjct: 151 AFIAELLSDHPNAMLMGDFNCMAD-----RPEMQSLYRHTRLQPPSCEVHTFPSWRPDRA 205
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ L+ +S I + S H + ++
Sbjct: 206 -----------IDHILVSDSLVIEHTEAIPAAF-----SDHLAVGMDIR 238
>gi|146310406|ref|YP_001175480.1| hypothetical protein Ent638_0743 [Enterobacter sp. 638]
gi|167016789|sp|A4W6U9|Y743_ENT38 RecName: Full=UPF0294 protein Ent638_0743
gi|145317282|gb|ABP59429.1| Endonuclease/exonuclease/phosphatase [Enterobacter sp. 638]
Length = 266
Score = 34.8 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R K+
Sbjct: 176 DQIAHHSGPIIMAGDFNAW--SRPRMNALYRFAREMSLREVRFTD-------DQRRKAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 227 RPLDFVFYRGLNVHEASVLVT------------RASDHNPLLVEFS 260
>gi|114706662|ref|ZP_01439563.1| hypothetical protein FP2506_12959 [Fulvimarina pelagi HTCC2506]
gi|114538054|gb|EAU41177.1| hypothetical protein FP2506_12959 [Fulvimarina pelagi HTCC2506]
Length = 255
Score = 34.8 bits (78), Expect = 4.2, Method: Composition-based stats.
Identities = 12/115 (10%), Positives = 22/115 (19%), Gaps = 22/115 (19%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++Q L W + ++ GDFN + +
Sbjct: 158 ARQIRELSHWVAE---DHTSTIVVGDFNAFRGESELRPLLAS--GHLYHANKGMEPTFRF 212
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
LI + S H L ++
Sbjct: 213 GPWR-------------AALDTCLISEDLRNHAKITIVDQPY----SDHQMLVMD 250
>gi|225459892|ref|XP_002263695.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 1211
Score = 34.8 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 11/104 (10%)
Query: 20 GIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
P+ +AGDFN + + + L
Sbjct: 171 NGPWCVAGDFNAILRPEESSRGGSLNSIMRRFAEAIEELELKDLPMVGGPFTW---TGGT 227
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
D FLI+ + + + +S H P+ ++
Sbjct: 228 DNQ-SFSRLDRFLINEEWDSH-FGDARQFLLLRPVSDHFPILMD 269
>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1833
Score = 34.8 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 4/106 (3%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE----STCNVIKRNKS 71
+ +G P+++ GDFN + + E + +
Sbjct: 105 RSNSGDPWLMIGDFNEAMWQTEHKSHRKRSESQMRDFREVLSECDLHDIGFQGAPWTFCN 164
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + + + Q+ + + S H PL +E
Sbjct: 165 MQREGRNVKVRLDRGVASPAWSSRFPQAVITHLTTPSSDHAPLLLE 210
>gi|325916353|ref|ZP_08178628.1| metal-dependent hydrolase [Xanthomonas vesicatoria ATCC 35937]
gi|325537401|gb|EGD09122.1| metal-dependent hydrolase [Xanthomonas vesicatoria ATCC 35937]
Length = 255
Score = 34.8 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 9/109 (8%), Positives = 26/109 (23%), Gaps = 21/109 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + ++ GDFN + + P R
Sbjct: 161 AFIAELLSEHPNAMLMGDFNCVADRPEMQALY-------RHTRLQPPSGVVHTFPSWRPD 213
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++D+ ++ + + S H + ++
Sbjct: 214 RAIDHILVSDSL--------------VIEHTEAIPAAFSDHLAVGMDIR 248
>gi|289668451|ref|ZP_06489526.1| hypothetical protein XcampmN_08130 [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 245
Score = 34.8 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 12/109 (11%), Positives = 28/109 (25%), Gaps = 21/109 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + ++ GDFN + Q + L E + +
Sbjct: 151 AFIAELLSDHPNAMLMGDFNCMAD-----RPEMQSLYRHTRLQPPSCEVHTFPSWRPDRA 205
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ L+ +S I + S H + ++
Sbjct: 206 -----------IDHILVSDSLVIEHTEAIPAAF-----SDHLAVGMDIR 238
>gi|242091213|ref|XP_002441439.1| hypothetical protein SORBIDRAFT_09g026716 [Sorghum bicolor]
gi|241946724|gb|EES19869.1| hypothetical protein SORBIDRAFT_09g026716 [Sorghum bicolor]
Length = 563
Score = 34.8 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 11/108 (10%), Positives = 21/108 (19%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L + + + D++R + + DG +
Sbjct: 414 LNYRINLSYERTHELISKQDWDRLFERDQLKRELRKGCTFDGWFEGVISFPPTYKYEFDS 473
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
D R + LS H P+
Sbjct: 474 EYYVSDESKSGRRTPAWCDRILSYGKGIRLLSYKRGELTLSDHRPVAA 521
>gi|237744646|ref|ZP_04575127.1| dnase I homologous protein dhp2 precursor [Fusobacterium sp. 7_1]
gi|229431875|gb|EEO42087.1| dnase I homologous protein dhp2 precursor [Fusobacterium sp. 7_1]
Length = 278
Score = 34.8 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 5/106 (4%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + +IAGDFN ++ D + ++T V R
Sbjct: 169 NYFQDRDEKENDILIAGDFNLYALDESFR-PLYKH--ADKITYAIDSAIKTTIGVKGRAN 225
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S + S + + + R +S H P+ I
Sbjct: 226 SYD--NFFFSQKYSQEFTGSSGALDFSGDNPKLMREIVSDHIPVFI 269
>gi|15072501|gb|AAK77971.1| pol protein [Drosophila melanogaster]
Length = 1080
Score = 34.8 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 36/117 (30%), Gaps = 10/117 (8%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQK--MDPDGLLIRFPQEKESTCNVIKR 68
+A++ + F++ GD+N K G T + + + + C
Sbjct: 136 NFAEKTLGGQTKFILCGDWNAKHRQWGCTRACQRGTALYEAVQADPMAEIIATGCATH-- 193
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
+ +F I + S + S H P+ +E + + +
Sbjct: 194 ---FPHDTRKNPSAIDFSICKGLGRLEKRISSV---ADLSSDHLPILLEINLDTSTL 244
>gi|296087753|emb|CBI35009.3| unnamed protein product [Vitis vinifera]
Length = 484
Score = 34.8 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 12/124 (9%), Positives = 26/124 (20%), Gaps = 24/124 (19%)
Query: 20 GIPFVIAGDFN------RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV-------- 65
GD N + W+ + L R ++
Sbjct: 305 HDRIFWLGDLNYRLCLEDNLARKLIKRQDWRALQEFDQLRREQEDGGVFQGWKEGNIEFA 364
Query: 66 ----------IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + + + + + Q SK S H P++
Sbjct: 365 PTYKYSTSNCNRYSGGLPNRSGEKQRTPAWCDRILWYGKGVKQLTYFRSESKFSDHRPVS 424
Query: 116 IEYD 119
+
Sbjct: 425 ALFS 428
>gi|115470837|ref|NP_001059017.1| Os07g0175900 [Oryza sativa Japonica Group]
gi|34393823|dbj|BAC83427.1| putative inositol-1,4,5-trisphosphate 5-phosphatase [Oryza sativa
Japonica Group]
gi|113610553|dbj|BAF20931.1| Os07g0175900 [Oryza sativa Japonica Group]
gi|215695118|dbj|BAG90309.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 570
Score = 34.8 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 7/72 (9%), Positives = 15/72 (20%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + R + R + + +Q
Sbjct: 457 RVFQGWKEGRIYFPPTYKYSFNSDRYAGEGMHPKEKRRTPAWCDRILWYGNGLNQLCYVR 516
Query: 104 RRSKLSTHCPLT 115
S+ S H P+
Sbjct: 517 GESRFSDHRPVY 528
>gi|320094449|ref|ZP_08026228.1| endonuclease/exonuclease/phosphatase [Actinomyces sp. oral taxon
178 str. F0338]
gi|319978623|gb|EFW10187.1| endonuclease/exonuclease/phosphatase [Actinomyces sp. oral taxon
178 str. F0338]
Length = 476
Score = 34.8 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 12/131 (9%), Positives = 22/131 (16%), Gaps = 26/131 (19%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST-------------- 62
+ T FVI GD+N ++ ++
Sbjct: 275 LATDANFVILGDYNSDPLDGDSYPGAIDQLLTSPRVVDTMPTSAGGPAEAELQGGANLAH 334
Query: 63 -CNVIKRNKSSLDYFVIDR-DNKNFLIDNSFSIVSYDQSDLDTRRS----------KLST 110
+ D L + + S
Sbjct: 335 KTDPKYDTGDFTDDPRPGNLRIDYVLPNTGTQVDEAHVFWPTRDDELFRLTGVHPFPTSD 394
Query: 111 HCPLTIEYDFE 121
H + F
Sbjct: 395 HRMVWTRLRFP 405
>gi|242054337|ref|XP_002456314.1| hypothetical protein SORBIDRAFT_03g033855 [Sorghum bicolor]
gi|241928289|gb|EES01434.1| hypothetical protein SORBIDRAFT_03g033855 [Sorghum bicolor]
Length = 208
Score = 34.8 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
RN + I + ++ + + + + + + S H P+ I +
Sbjct: 39 FTWRNNNHRVEGYIRERLDRAVANSQWRGL-FPAARVFNGDPRHSDHRPVIITVE 92
>gi|149370075|ref|ZP_01889926.1| YD repeat [unidentified eubacterium SCB49]
gi|149356566|gb|EDM45122.1| YD repeat [unidentified eubacterium SCB49]
Length = 346
Score = 34.8 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 13/103 (12%), Positives = 29/103 (28%), Gaps = 16/103 (15%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
P V+ GD N + S ++K+ + + LD+
Sbjct: 232 NKPIVVCGDMNDVVWSRTTR--LFKKITGMIDPRIGRGFFSTYSAEYWFMRFPLDHLFHT 289
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+D ++ ++ S H + E ++
Sbjct: 290 KDLF--------------IGKMERSKNFGSDHFAMYYEIQLKQ 318
>gi|82793510|ref|XP_728069.1| endonuclease/exonuclease/phosphatase [Plasmodium yoelii yoelii str.
17XNL]
gi|23484232|gb|EAA19634.1| Endonuclease/Exonuclease/phosphatase family, putative [Plasmodium
yoelii yoelii]
Length = 827
Score = 34.8 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 2/94 (2%)
Query: 29 FNRKINSIG--DTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFL 86
FN NS + + L + + N LDY + + K
Sbjct: 734 FNIDNNSNDQKINGPYLNRKKFLPLYSAYKKVDIPYTNWNNNFIDVLDYIFLSPELKVKR 793
Query: 87 IDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +DQ S H + E +
Sbjct: 794 VLKGVDKDIFDQYKGIVSPFNPSDHLSIAAEIEL 827
>gi|332559328|ref|ZP_08413650.1| hypothetical protein RSWS8N_09735 [Rhodobacter sphaeroides WS8N]
gi|332277040|gb|EGJ22355.1| hypothetical protein RSWS8N_09735 [Rhodobacter sphaeroides WS8N]
Length = 309
Score = 34.8 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 28/121 (23%), Gaps = 11/121 (9%)
Query: 10 KKWADQKIKTGIP---FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ D ++ P ++ G N + + L
Sbjct: 191 ARLLDGRLPFPAPEGSVLLMGKANIDPLAGDGPRAAIAALLAHPALQDPAPRGPDGSRAT 250
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRR------SKLSTHCPLTIEYDF 120
++ D L S + + ++ S H P+ +E D
Sbjct: 251 ADFRA--DGGPGLLRTDYILPARSLHVTASGVLWPPPGDPLAVVAAQASRHRPVWVELDL 308
Query: 121 E 121
Sbjct: 309 P 309
>gi|229171215|ref|ZP_04298808.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus MM3]
gi|228612295|gb|EEK69524.1| Endonuclease/exonuclease/phosphatase [Bacillus cereus MM3]
Length = 263
Score = 34.8 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 10/120 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q L D + + GDFN ++ G + + L +
Sbjct: 151 FKDQVNRLMGRVD----SNELSFLMGDFNNNARLQGEGYEYMMQKGLYDTYELAI----E 202
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++ + D + L + S + S T R+ +S H + ++ D
Sbjct: 203 KDEGTTVQGEIAGWDENKHNLRIDLILCNQSEKVRSSKVIFNGTNRNVISDHFGVEVQVD 262
>gi|222636531|gb|EEE66663.1| hypothetical protein OsJ_23293 [Oryza sativa Japonica Group]
Length = 516
Score = 34.8 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 7/72 (9%), Positives = 15/72 (20%)
Query: 44 QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT 103
+ + R + R + + +Q
Sbjct: 396 RVFQGWKEGRIYFPPTYKYSFNSDRYAGEGMHPKEKRRTPAWCDRILWYGNGLNQLCYVR 455
Query: 104 RRSKLSTHCPLT 115
S+ S H P+
Sbjct: 456 GESRFSDHRPVY 467
>gi|161504628|ref|YP_001571740.1| hypothetical protein SARI_02744 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160865975|gb|ABX22598.1| hypothetical protein SARI_02744 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 259
Score = 34.8 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R ++
Sbjct: 169 DQIAHHSGPVIMAGDFNAW--SRPRMNALYRFAREMSLRQVRFTD-------DQRRRAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S+ ++ S H PL +E+
Sbjct: 220 RPL------------DFVFYRGLNVSEASVLVTRASDHNPLLVEFS 253
>gi|156935277|ref|YP_001439193.1| hypothetical protein ESA_03130 [Cronobacter sakazakii ATCC BAA-894]
gi|156533531|gb|ABU78357.1| hypothetical protein ESA_03130 [Cronobacter sakazakii ATCC BAA-894]
Length = 260
Score = 34.8 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R ++
Sbjct: 169 DQIGHHSGPVIMAGDFNAW--SRPRMNALYRFAREMSLREVRFTD-------DQRRRAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 220 RPLDFVFYRGLAVQEASVLVT------------RASDHNPLLVEFS 253
>gi|55167960|gb|AAV43829.1| hypothetical protein [Oryza sativa Japonica Group]
gi|55168037|gb|AAV43905.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 796
Score = 34.8 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 7/117 (5%)
Query: 4 QQGEWLKKW-ADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + LK W ++IK+ P+++ GDFN + + + +
Sbjct: 438 RSQDRLKMWTLLRRIKSNAALPWLMIGDFNEAMWQSEHWSRVRRSERQMKDFREALADCD 497
Query: 61 ----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
V ++ R + + + + + Q+ + + S H P
Sbjct: 498 LHDLGFHGVPWTYDNNQRGANNVRVRLDRAVASPAWLGRFRQASITHLVTPSSDHVP 554
>gi|260596625|ref|YP_003209196.1| hypothetical protein CTU_08330 [Cronobacter turicensis z3032]
gi|260215802|emb|CBA28247.1| UPF0294 protein Ent638_0743 [Cronobacter turicensis z3032]
Length = 267
Score = 34.8 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R ++
Sbjct: 176 DQIGHHSGPVIMAGDFNAW--SRPRMNALYRFAREMSLREVRFTD-------DQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 227 RPLDFVFYRGLAVQEASVLVT------------RASDHNPLLVEFS 260
>gi|83747941|ref|ZP_00944972.1| dioxygenase [Ralstonia solanacearum UW551]
gi|207743451|ref|YP_002259843.1| metal-dependent hydrolase protein [Ralstonia solanacearum IPO1609]
gi|83725359|gb|EAP72506.1| dioxygenase [Ralstonia solanacearum UW551]
gi|206594848|emb|CAQ61775.1| metal-dependent hydrolase protein [Ralstonia solanacearum IPO1609]
Length = 289
Score = 34.8 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 24/105 (22%), Gaps = 4/105 (3%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDF--WQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ VI GDFN K +S + +
Sbjct: 184 LAQTHATVICGDFNCKPDSTPKRLATVPFSHETATLYDAWEVAHGTAPQPPTFGVHDRTG 243
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ L+ ++ S H P+ +E +
Sbjct: 244 WTEPAYACDFMLVSEPLKTRVARVEVNSV--TQASDHQPMLLELN 286
>gi|270016610|gb|EFA13056.1| hypothetical protein TcasGA2_TC001397 [Tribolium castaneum]
Length = 2223
Score = 34.8 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 27/105 (25%), Gaps = 11/105 (10%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINS--IGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
L+ P ++ GDFN K + +D + +
Sbjct: 1364 LESLTTSMQTQSDPVIVTGDFNAKSTEWGMPYSDRRGSLLADWIAQHDLTAVNKHDEYTF 1423
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+R ++ + +++ + LS H
Sbjct: 1424 QRGRAQSIIDLTLVPTYLVHKLSNWRTLDA---------ESLSDH 1459
>gi|254485493|ref|ZP_05098698.1| endonuclease/exonuclease/phosphatase [Roseobacter sp. GAI101]
gi|214042362|gb|EEB83000.1| endonuclease/exonuclease/phosphatase [Roseobacter sp. GAI101]
Length = 229
Score = 34.8 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 22/114 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L D++ + P +IAGD N ++G + +
Sbjct: 126 QLSRLIAHLDERSR--RPTLIAGDMNEWSQTVGL-------------------GRLAHHF 164
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
I S + +D+ F +V + S H P+ +++
Sbjct: 165 TIYAPGKSFHARLPMAALDRIAMDDDFQLVDGGV-VETQDAKRASDHLPIWLDF 217
>gi|167999021|ref|XP_001752216.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696611|gb|EDQ82949.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 447
Score = 34.8 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 14/129 (10%), Positives = 31/129 (24%), Gaps = 22/129 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDF------WQKMD---------PDGLLIRFP 56
+ I + GD N +I+ W+ + G + +
Sbjct: 271 HLPETIMAHDRIIWLGDLNYRIDLPDKETWILVNQCDWKSLLPRDQLSIERDAGRVFKGW 330
Query: 57 QEKESTCNVIKR-------NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
E+ + + R + Q ++LS
Sbjct: 331 HEEVINFPPTYKFVEESDKYFGENTFEGDKRRTPAWCDRILSYGKGLRQLSYSMVEARLS 390
Query: 110 THCPLTIEY 118
H P+ ++
Sbjct: 391 DHRPVIAKF 399
>gi|242076088|ref|XP_002447980.1| hypothetical protein SORBIDRAFT_06g019215 [Sorghum bicolor]
gi|241939163|gb|EES12308.1| hypothetical protein SORBIDRAFT_06g019215 [Sorghum bicolor]
Length = 746
Score = 34.8 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 15/117 (12%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKE 60
L++ A + P+ + GDFN ++ ++ +++ + L+
Sbjct: 72 LEELAAVRDACVGPWAVVGDFNLILDEADKSNGAINRRNLNRFRQTVAELELVDIHLHGR 131
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+R L+ + + D L S S HCPL ++
Sbjct: 132 RYTWSNERRSP------TMVRLDRALVSLDWEAMHPDCH-LQALSSDASDHCPLLLQ 181
>gi|213581493|ref|ZP_03363319.1| hypothetical protein SentesTyph_09907 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 203
Score = 34.8 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R ++
Sbjct: 113 DQIAHHSGPVIMAGDFNAW--SRPRMNALYRFAREMSLRQVRFTD-------DQRRRAFG 163
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 164 RPLDFVFYRGLNVNEASVLVT------------RASDHNPLLVEFS 197
>gi|23013323|ref|ZP_00053232.1| COG3568: Metal-dependent hydrolase [Magnetospirillum
magnetotacticum MS-1]
Length = 330
Score = 34.8 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 12/117 (10%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFP---------QEKESTCNVIK 67
V+ GDFN + G D + E + +
Sbjct: 212 ADADALVVVCGDFNAGEHEAGMRIIKGDDEDTGNGHLAMRMLVPLERSLPEAQRYSVIHH 271
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL---STHCPLTIEYDFE 121
LD+ ++ R + + + + S H P+ E+
Sbjct: 272 GRPVMLDHILVSRPLLGWYLGAEIHNETLGDELVSPALVLAPPQSYHAPVVAEFSLP 328
>gi|253686638|ref|YP_003015828.1| Endonuclease/exonuclease/phosphatase [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251753216|gb|ACT11292.1| Endonuclease/exonuclease/phosphatase [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 381
Score = 34.8 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 20/140 (14%), Positives = 36/140 (25%), Gaps = 23/140 (16%)
Query: 3 SQQGEWLKKWADQKIK-TGIPFVIAGDFNRKINSI-GDTDDFWQKMDPDGLLIRFPQEKE 60
Q E + + Q VI GD N ++ + D ++ EKE
Sbjct: 240 RDQAERVAEIVQQTYDLKKDYVVILGDLNEDSSNPWHSLAPLFSLSDLHPVIDPERPEKE 299
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIV------SYDQSDLDTR---------- 104
K +D + + + Y+ + +
Sbjct: 300 RYTYYFAGGKKGARLNQLDYIFLSAPLHQAVVEWGVERRGIYNIDKIAAKEGAEPVTPLP 359
Query: 105 -----RSKLSTHCPLTIEYD 119
+ S H L +E D
Sbjct: 360 EVTSWDTAASDHAALWVEVD 379
>gi|147805709|emb|CAN65018.1| hypothetical protein VITISV_018014 [Vitis vinifera]
Length = 805
Score = 34.8 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 27/105 (25%), Gaps = 15/105 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ + GDFN + + ++ + L P + S
Sbjct: 92 NDPWCVGGDFNVIRLPSERRNCLNMSSAMRRFSEVIDELQLRDLPLVRGSYTWC------ 145
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
FL+ + + +S H P+ +
Sbjct: 146 GGLNNRSTSRLDRFLVSEEWESH-FSNLSQSLLPKPISDHAPILL 189
>gi|29290095|gb|AAO67565.1| Pol protein [Drosophila americana]
Length = 1517
Score = 34.8 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 26/128 (20%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKIN------SIGDTDDFWQKMDPDGLLI-RFPQEKES 61
L D G F+I GD+N K + + + +
Sbjct: 197 LLSHIDSLSPQG--FIICGDWNAKSTWWGNMRHCQRGRELLRTIHSNKKYNILATGGTTH 254
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY--- 118
S++D+ + + +Y +DL+ S H P+ I+
Sbjct: 255 YPYARGNQPSAIDFAIYGGIGDR-------RLRTYSINDLN------SDHLPILIDLAIG 301
Query: 119 -DFEKGNV 125
+ NV
Sbjct: 302 QALNRNNV 309
>gi|332522369|ref|ZP_08398621.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
porcinus str. Jelinkova 176]
gi|332313633|gb|EGJ26618.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
porcinus str. Jelinkova 176]
Length = 275
Score = 34.8 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 2/107 (1%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+P V+ GDFN +S G + + +++
Sbjct: 167 QSLQNLNLPLVVMGDFNNPTDSKGYNMILRSSLGLRDSHKEA-EIVFGDHSIVSDIDGWE 225
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + F+I + + +S H L++E +
Sbjct: 226 GNR-YSFKVDHAFMSQEFNISRSEITFEGGDAPVVSDHYGLSVEASW 271
>gi|262037757|ref|ZP_06011199.1| putative endonuclease/exonuclease/phosphatase [Leptotrichia
goodfellowii F0264]
gi|261748229|gb|EEY35626.1| putative endonuclease/exonuclease/phosphatase [Leptotrichia
goodfellowii F0264]
Length = 257
Score = 34.8 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 14/101 (13%), Positives = 24/101 (23%), Gaps = 14/101 (13%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
+I G + GD N + D + K +
Sbjct: 163 IMSEIAEGDIKFLGGDLNMLPTTEYYNQITQNWKDTYLEGDKAGVRKNEDPRIDYILGDF 222
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
+ + S+ +D +KLS H P
Sbjct: 223 STNWKLKE--------------SFFINDNTQEWTKLSDHLP 249
>gi|260494509|ref|ZP_05814639.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
gi|260197671|gb|EEW95188.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
Length = 278
Score = 34.8 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 5/106 (4%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + +IAGDFN ++ D + ++T R
Sbjct: 169 NYFQDRDEKENDILIAGDFNLYALDESFR-PLYKH--ADKITYAIDPAIKTTIGAKGRAN 225
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S + S + + + R +S H P+ I
Sbjct: 226 SYD--NFFFSQKYSQEFTGSSGALDFSGDNPKLMREIVSDHIPVFI 269
>gi|58269854|ref|XP_572083.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|74684000|sp|Q5KDJ2|CCR4_CRYNE RecName: Full=Glucose-repressible alcohol dehydrogenase
transcriptional effector; AltName: Full=Carbon
catabolite repressor protein 4; AltName:
Full=Cytoplasmic deadenylase
gi|57228319|gb|AAW44776.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 744
Score = 34.8 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 28/135 (20%), Gaps = 25/135 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC------- 63
K+ + IP ++ D N S D P
Sbjct: 597 KYERSEKGRDIPLIMCVDLNSFSGS-AVYDYLSSGSIPGDHEDFMSHLYGRYTASGLKHH 655
Query: 64 ----------------NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL-DTRRS 106
N +++DY +Y +
Sbjct: 656 LGLRSACAGIGEMRMTNFTPTFAAAIDYVFYTPRTMKVTSVLGDVDKAYLDKTVGFPNAH 715
Query: 107 KLSTHCPLTIEYDFE 121
S H P+ ++ +
Sbjct: 716 FPSDHIPVFTQFRIK 730
>gi|58583508|ref|YP_202524.1| hypothetical protein XOO3885 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|188575228|ref|YP_001912157.1| endonuclease/exonuclease/phosphatase [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|58428102|gb|AAW77139.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|188519680|gb|ACD57625.1| endonuclease/exonuclease/phosphatase [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 255
Score = 34.8 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 11/109 (10%), Positives = 28/109 (25%), Gaps = 21/109 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + ++ GDFN + Q + L E + +
Sbjct: 161 AFIAELLSDHPNAMLMGDFNCMAD-----RPEMQSLYRHTRLQPPSCEVHTFPSWRPDRA 215
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ L+ +S + + S H + ++
Sbjct: 216 -----------IDHILVSDSL-----VIEHTEAIPAAFSDHLAVGMDIR 248
>gi|158315736|ref|YP_001508244.1| endonuclease/exonuclease/phosphatase [Frankia sp. EAN1pec]
gi|158111141|gb|ABW13338.1| Endonuclease/exonuclease/phosphatase [Frankia sp. EAN1pec]
Length = 470
Score = 34.8 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 9/127 (7%), Positives = 23/127 (18%), Gaps = 13/127 (10%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ + + + P ++ GD N + + + + +
Sbjct: 310 RNAQA-NELYSALVTATRPVILLGDLNSQPSDLTGPYGLFTQGGYTDAWATIHGPDGGFT 368
Query: 64 NVI-------KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK-----LSTH 111
+DY + R S H
Sbjct: 369 ATQIELDVMPSTLDRRIDYVLYQPTRPEHSDLEQVRAARATVIGNKLRDRTPSGLWPSDH 428
Query: 112 CPLTIEY 118
+
Sbjct: 429 AGVVAAL 435
>gi|134113731|ref|XP_774450.1| hypothetical protein CNBG0960 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257088|gb|EAL19803.1| hypothetical protein CNBG0960 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 744
Score = 34.8 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 15/135 (11%), Positives = 28/135 (20%), Gaps = 25/135 (18%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC------- 63
K+ + IP ++ D N S D P
Sbjct: 597 KYERSEKGRDIPLIMCVDLNSFSGS-AVYDYLSSGSIPGDHEDFMSHLYGRYTASGLKHH 655
Query: 64 ----------------NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDL-DTRRS 106
N +++DY +Y +
Sbjct: 656 LGLRSACAGIGEMRMTNFTPTFAAAIDYVFYTPRTMKVTSVLGDVDKAYLDKTVGFPNAH 715
Query: 107 KLSTHCPLTIEYDFE 121
S H P+ ++ +
Sbjct: 716 FPSDHIPVFTQFRIK 730
>gi|194333559|ref|YP_002015419.1| hypothetical protein Paes_0725 [Prosthecochloris aestuarii DSM 271]
gi|194311377|gb|ACF45772.1| conserved hypothetical protein [Prosthecochloris aestuarii DSM 271]
Length = 477
Score = 34.4 bits (77), Expect = 4.6, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 43/155 (27%), Gaps = 34/155 (21%)
Query: 1 MLSQQGEWLKKWADQKIKTGIP------FVIAGDFNRKINSIGDTDDFWQ-------KMD 47
+ +Q+ E L ++ ++ + F + GDFN + ++
Sbjct: 306 LRNQEIERLTRFLAKRARNENDSDANNFFFVLGDFNIVGKDHTTWESLHTNGFSVPEQLR 365
Query: 48 PDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLD----- 102
++K + S D N I + F V + D
Sbjct: 366 AIPHGSNVKRDKAYDQIAFWQPGSRSRKGSTCIDIGNAGIFDFFKYVFREGEDDAEGEDE 425
Query: 103 ----------------TRRSKLSTHCPLTIEYDFE 121
R ++S H P+ IE +
Sbjct: 426 QYYADAVGKTKLNYRTWRTYQMSDHLPMWIELRID 460
>gi|302535010|ref|ZP_07287352.1| predicted protein [Streptomyces sp. C]
gi|302443905|gb|EFL15721.1| predicted protein [Streptomyces sp. C]
Length = 342
Score = 34.4 bits (77), Expect = 4.7, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 25/118 (21%), Gaps = 20/118 (16%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L + ++ GDFN + D +
Sbjct: 245 DEAARNLAARLRE--GPDGRTLLVGDFNATTADS-----VLAPVTRDFTAAQEEAGAGFG 297
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ L+ + VS T + S H P+ +
Sbjct: 298 LSW--------PARFPVARIDQILLRGGLAPVSAW-----TLPATASDHLPVAASLRY 342
>gi|323528578|ref|YP_004230730.1| endonuclease/exonuclease/phosphatase [Burkholderia sp. CCGE1001]
gi|323385580|gb|ADX57670.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. CCGE1001]
Length = 302
Score = 34.4 bits (77), Expect = 4.7, Method: Composition-based stats.
Identities = 17/109 (15%), Positives = 28/109 (25%), Gaps = 11/109 (10%)
Query: 17 IKTGIPF--VIAGDFNRKINSIGDTDDFWQKMDP---DGLLIRFPQEKESTCNVI-KRNK 70
TG P ++ GDFN S + V ++
Sbjct: 187 ADTGRPMSAIVCGDFNSAFGSAAYRKMLKAVPGAPAFADAWACAHADSPRAATVGLYDHE 246
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
D D + + S + S+ S H P+ +E
Sbjct: 247 QWADGPFACDFI-FVTEDLAPRVASCEVD----PHSRSSDHQPMWLELR 290
>gi|242076636|ref|XP_002448254.1| hypothetical protein SORBIDRAFT_06g024090 [Sorghum bicolor]
gi|241939437|gb|EES12582.1| hypothetical protein SORBIDRAFT_06g024090 [Sorghum bicolor]
Length = 275
Score = 34.4 bits (77), Expect = 4.7, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 38/120 (31%), Gaps = 15/120 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------DFWQKMDPDGLLIRFPQ 57
++L + +++ GDFN ++ ++ +
Sbjct: 81 VQFLSSLIQVRASCPEAWLLCGDFNMIYREADKSNGRLDRRGMRRFRAFINRVAIDELHL 140
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
E R+ +L+ + +++ + ++ SD S HCPL ++
Sbjct: 141 EGRRFTWSNWRDNPTLERLDRVFASPDWIAQHPNHLLKALSSDC-------SDHCPLLLQ 193
>gi|170591751|ref|XP_001900633.1| Endonuclease/Exonuclease/phosphatase family protein [Brugia malayi]
gi|158591785|gb|EDP30388.1| Endonuclease/Exonuclease/phosphatase family protein [Brugia malayi]
Length = 412
Score = 34.4 bits (77), Expect = 4.7, Method: Composition-based stats.
Identities = 13/114 (11%), Positives = 31/114 (27%), Gaps = 2/114 (1%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--WQKMDPDGLLIRFPQEKESTCNVIKR 68
W ++ + + + N + + F ++ +G E++ R
Sbjct: 183 NWRVDQLTSQEMIMKLAELNSNEHMDKLVNKFDQLKRAQRNGQAFMDYNEEKIHFAPTYR 242
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
Y+ +R + R LS H P+ + +
Sbjct: 243 LMVGSSYYDQERVPSWCDRILFKGKSLRCERYKSNRMVTLSDHFPVYAHFILSE 296
>gi|92114229|ref|YP_574157.1| hypothetical protein Csal_2107 [Chromohalobacter salexigens DSM
3043]
gi|91797319|gb|ABE59458.1| conserved hypothetical protein [Chromohalobacter salexigens DSM
3043]
Length = 367
Score = 34.4 bits (77), Expect = 4.7, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 33/104 (31%), Gaps = 16/104 (15%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
+G+P ++AGD N + ++ + + +Y
Sbjct: 239 RDSGLPTLVAGDLNDVA-----WSKTTRLFCRISGMLDPRRGRGLYSTFH------AEYR 287
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + F++V+ L + S H P+ + +
Sbjct: 288 WLRWPLDHVFVSEHFTLVA-----LQRLSAFGSDHFPILATFRY 326
>gi|78046333|ref|YP_362508.1| hypothetical protein XCV0777 [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325928431|ref|ZP_08189622.1| metal-dependent hydrolase [Xanthomonas perforans 91-118]
gi|78034763|emb|CAJ22408.1| conserved hypothetical protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325541148|gb|EGD12699.1| metal-dependent hydrolase [Xanthomonas perforans 91-118]
Length = 255
Score = 34.4 bits (77), Expect = 4.7, Method: Composition-based stats.
Identities = 12/109 (11%), Positives = 28/109 (25%), Gaps = 21/109 (19%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + ++ GDFN + Q + L E + +
Sbjct: 161 AFIAELLSDHPNAMLMGDFNCMAD-----RPEMQSLYRHTRLQPPSCEVHTFPSWRPDRA 215
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ L+ +S I + S H + ++
Sbjct: 216 -----------IDHILVSDSLVIEHTEAIPAAF-----SDHLAVGMDIR 248
>gi|115467164|ref|NP_001057181.1| Os06g0222900 [Oryza sativa Japonica Group]
gi|51536047|dbj|BAD38173.1| putative inositol 1,4,5-trisphosphate 5-phosphatase [Oryza sativa
Japonica Group]
gi|113595221|dbj|BAF19095.1| Os06g0222900 [Oryza sativa Japonica Group]
gi|215766685|dbj|BAG98913.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 533
Score = 34.4 bits (77), Expect = 4.7, Method: Composition-based stats.
Identities = 11/124 (8%), Positives = 27/124 (21%), Gaps = 26/124 (20%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF------------------- 55
++I + GD N +++ D+ ++ +
Sbjct: 366 ERILDHDRMIWLGDLNYRMSLS--YDETRTLLEDNDWDALLEKDQLLIEREAGRVFRGWN 423
Query: 56 -----PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ R + + +Q S+ S
Sbjct: 424 EGKICFAPTYKYTHNSDAYAGETAKSKKKRRTPAWCDRILWQGDGIEQLQYLRGESRFSD 483
Query: 111 HCPL 114
H P+
Sbjct: 484 HRPV 487
>gi|225458669|ref|XP_002282902.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 695
Score = 34.4 bits (77), Expect = 4.7, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 30/104 (28%), Gaps = 15/104 (14%)
Query: 22 PFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
P+ + GDFN + + ++ D L+ +
Sbjct: 223 PWCLGGDFNITLAQGERNRQGRITSAMRRFAEVVDDLGLVDIQLHGGAFTWT------GG 276
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ FL+ + + + + +S H P+ +E
Sbjct: 277 LNNMSRARLDRFLVSPCW-LDQFSRVCQRRLPRPISDHFPVLLE 319
>gi|158828301|gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebennensis]
Length = 464
Score = 34.4 bits (77), Expect = 4.7, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 32/129 (24%), Gaps = 27/129 (20%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIG---------DTDDFWQKMDPDGLLIRFPQ 57
E L+ P +I GDFN I + + D LI
Sbjct: 119 EKLRDVVQAI---DEPLIIGGDFNTIIRTDERIGGNGQLSPDSVAFGNWVSDLFLIDMGF 175
Query: 58 EKESTCNVIKRNKS-----SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ R S LD ++ + + S H
Sbjct: 176 KGNRYTWKRGRAASNFIAKRLDRVFCCAHSRLKWQEAFVKHL----------AVLSSDHT 225
Query: 113 PLTIEYDFE 121
PL I+ E
Sbjct: 226 PLYIQLCLE 234
>gi|147771264|emb|CAN72019.1| hypothetical protein VITISV_001842 [Vitis vinifera]
Length = 590
Score = 34.4 bits (77), Expect = 4.8, Method: Composition-based stats.
Identities = 12/103 (11%), Positives = 27/103 (26%), Gaps = 9/103 (8%)
Query: 20 GIPFVIAGDFNRKINSIGDTDD-----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
P+ + GDFN + ++ + +
Sbjct: 235 DDPWCVGGDFNSVRFPEERRNAPSLIAEMRRFSEVIGELGLRDSPLTGGPFTW---IGAL 291
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+FLI + + + + +S H P+ +E
Sbjct: 292 NSQAAFRLDHFLISDQWEDH-FSAITQSSLPRMVSDHNPIVLE 333
>gi|270016647|gb|EFA13093.1| hypothetical protein TcasGA2_TC012962 [Tribolium castaneum]
Length = 1333
Score = 34.4 bits (77), Expect = 4.8, Method: Composition-based stats.
Identities = 12/105 (11%), Positives = 26/105 (24%), Gaps = 11/105 (10%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINS--IGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
L+ P ++ GDFN K + +D + +
Sbjct: 647 LESLTTSMQTQSDPVIVTGDFNAKSTEWGMPYSDRRGSLLADWIAQHDLTAANKHDEYTF 706
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+R + + +++ + LS H
Sbjct: 707 QRGLAQSIIDLTLVPTYLVHKLSNWRTLDA---------ESLSDH 742
>gi|303282069|ref|XP_003060326.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457797|gb|EEH55095.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 446
Score = 34.4 bits (77), Expect = 4.8, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 26/129 (20%), Gaps = 25/129 (19%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST----C 63
L QK+ +P V+ GDFN K G +D + E+
Sbjct: 306 QLAAAYAQKMAGSLPVVLMGDFNLKPGDGGYDLITTGDIDAAHEAAPVAPDGETWSTALT 365
Query: 64 NV--------------IKRNKSSLDYFVIDRDNKNFLIDNSFS-------IVSYDQSDLD 102
D I + +
Sbjct: 366 YPMRSAYHVATGSEPDFTNFAQIKDDPQFIDTLDYIFISPTVDVAEVMPLPHRSEVKGPF 425
Query: 103 TRRSKLSTH 111
+ S H
Sbjct: 426 PSAVEPSDH 434
>gi|147844782|emb|CAN79044.1| hypothetical protein VITISV_043757 [Vitis vinifera]
Length = 1256
Score = 34.4 bits (77), Expect = 4.8, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 15/106 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ + GDFN ++ + + ++ D L+ P + RN
Sbjct: 669 DDPWCVGGDFNVTLSQRERSSQGSLNGAMRRFAQVVDDLELLDLPLQGVVFSWSEGRNNQ 728
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
S FL+ S+ + S H P+ ++
Sbjct: 729 S------WARLDRFLVTQSWLDLFRGV-VQSRLPRPTSDHFPILLK 767
>gi|257877086|ref|ZP_05656739.1| endonuclease/exonuclease/phosphatase [Enterococcus casseliflavus
EC20]
gi|257811252|gb|EEV40072.1| endonuclease/exonuclease/phosphatase [Enterococcus casseliflavus
EC20]
Length = 276
Score = 34.4 bits (77), Expect = 4.8, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 8/115 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E + ++ T +I GDFN S G + + +
Sbjct: 163 QQTEA---FLAERADT---LLILGDFNNDAASSGHQLVLDSSLQLQDSFLTASETIGEAS 216
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
V D N Y+ TR +S H + + +
Sbjct: 217 VVK-AIDGWQDNR-EALRIDYVFASNDLQATEYEVVFDGTRTPIVSDHFGIKVVF 269
>gi|6587849|gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 34.4 bits (77), Expect = 4.8, Method: Composition-based stats.
Identities = 11/107 (10%), Positives = 29/107 (27%), Gaps = 15/107 (14%)
Query: 21 IPFVIAGDFNRK---------INSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ + GDFN +++M ++ +R
Sbjct: 95 ERWCMVGDFNEILHNEEKIGGPKRCESYFKPFKEMHEACGMVELASTGNRFTWAGRRY-- 152
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
I + + + ++ S+ + S H P+ ++
Sbjct: 153 ---DLWIQSRLDRAFGNKEW-LKNFPASNQQFLEMRGSDHRPVLLKL 195
>gi|242309540|ref|ZP_04808695.1| cytolethal distending toxin B [Helicobacter pullorum MIT 98-5489]
gi|239524111|gb|EEQ63977.1| cytolethal distending toxin B [Helicobacter pullorum MIT 98-5489]
Length = 251
Score = 34.4 bits (77), Expect = 4.9, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 6/92 (6%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
++IAGDFNR+ S +D + + R + + + I +
Sbjct: 161 WLIAGDFNREPAS------LLSGLDSRVTSNIRIVSPNTATHFSSRGTNRILDYAIVGNT 214
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ + S +S + R S H P+
Sbjct: 215 QAPGVQVSLPALSAILAAASVRSYLSSDHFPV 246
>gi|242007919|ref|XP_002424763.1| TRAF and TNF receptor-associated protein, putative [Pediculus
humanus corporis]
gi|212508277|gb|EEB12025.1| TRAF and TNF receptor-associated protein, putative [Pediculus
humanus corporis]
Length = 360
Score = 34.4 bits (77), Expect = 4.9, Method: Composition-based stats.
Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 5/109 (4%)
Query: 18 KTGIPFVIAGDFNRKINS---IGDTDDFWQKMDPDGLLIRFPQEKES--TCNVIKRNKSS 72
+ + GD N + + D W+ ++ + + K
Sbjct: 249 EENSTIIFGGDLNLREKEVKTPKNFFDLWEFCGSPQQFKYTWDMTKNSNNSSNFGKFKPK 308
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ I N V + +S S H + + +D +
Sbjct: 309 CRFDRIYYRFSNPKRAFPKHFVLIGSERVPQTQSFPSDHWGIIVLFDLD 357
>gi|260912894|ref|ZP_05919379.1| endonuclease/exonuclease/phosphatase [Pasteurella dagmatis ATCC
43325]
gi|260632884|gb|EEX51050.1| endonuclease/exonuclease/phosphatase [Pasteurella dagmatis ATCC
43325]
Length = 359
Score = 34.4 bits (77), Expect = 4.9, Method: Composition-based stats.
Identities = 11/107 (10%), Positives = 23/107 (21%), Gaps = 16/107 (14%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
+ + ++ GD N + L+ +
Sbjct: 230 QEISENNQSVLVFGDLNDVA-----WSSTSRLFQKTSGLLDPRVGRGLYSTFH------A 278
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
Y + + N F + S H P+ + F
Sbjct: 279 KYPFLRWPLDHIYHSNDFMMRDIRVLSDI-----GSDHFPVYGCFQF 320
>gi|170755058|ref|YP_001781240.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum B1 str. Okra]
gi|169120270|gb|ACA44106.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum B1 str. Okra]
Length = 263
Score = 34.4 bits (77), Expect = 4.9, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 32/120 (26%), Gaps = 10/120 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q L + Q ++ GDFN +N G + L R
Sbjct: 151 FKFQANKLIEDLKQ----DETCILMGDFNNDAFLNYRGYDYLINKNFKDIYHLARSKDNG 206
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ I K + L + + + R+ +S H + + +
Sbjct: 207 VTVIGDIDGWKGNTKN----MRLDLILSNKNLKVEYCKVIFNGIRKEIISDHFGVEAKIE 262
>gi|117619965|ref|YP_856101.1| endonuclease/exonuclease/phosphatase family protein [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|117561372|gb|ABK38320.1| endonuclease/exonuclease/phosphatase family [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 281
Score = 34.4 bits (77), Expect = 4.9, Method: Composition-based stats.
Identities = 15/117 (12%), Positives = 32/117 (27%), Gaps = 24/117 (20%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
+Q L + P ++AGDFN +D + + QE
Sbjct: 182 FREQLNDLTALIHRHQG---PVILAGDFNT-------WNDKREFWLNKLVGELGLQEAIP 231
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ + + R+ + + + S H P+ +
Sbjct: 232 VPDLRRTAFGRPLDHLYYRNLDLVEVSSPATD--------------ASDHNPIMARF 274
>gi|317027142|ref|XP_001400210.2| inositol polyphosphate phosphatase [Aspergillus niger CBS 513.88]
Length = 1217
Score = 34.4 bits (77), Expect = 5.0, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 28/123 (22%), Gaps = 21/123 (17%)
Query: 19 TGIPFVIAGDFNRKINSIG-----------------DTDDFWQKMDPDGLLIRFPQEKES 61
++ GD N +I+SI + D + +
Sbjct: 1038 DHEICILNGDLNYRIDSIPRNVIIDDIRSNNLTKLLERDQLLASRRKNPGFRLRSFNEAP 1097
Query: 62 TCN-VIKRNKSSLDYFVIDRDNKNFLIDNSFSIV---SYDQSDLDTRRSKLSTHCPLTIE 117
+ D + + + Q + + S H P++
Sbjct: 1098 ITFAPTYKYDVGTDEYDSSDKKRAPAWCDRVLYRGLGRVRQLEYRRHEVRASDHRPVSAT 1157
Query: 118 YDF 120
+
Sbjct: 1158 FKL 1160
>gi|325107212|ref|YP_004268280.1| deoxyribonuclease I [Planctomyces brasiliensis DSM 5305]
gi|324967480|gb|ADY58258.1| Deoxyribonuclease I [Planctomyces brasiliensis DSM 5305]
Length = 330
Score = 34.4 bits (77), Expect = 5.0, Method: Composition-based stats.
Identities = 12/115 (10%), Positives = 28/115 (24%), Gaps = 10/115 (8%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + K+ + + GD N + + + +
Sbjct: 206 QLAQVYKFVSTFHRKEDDIFLLGDLNVDADD-------LAPFNSIPTVASIVPAGPTNT- 257
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
++ K V F ++ + +S H P+ E+
Sbjct: 258 --RKTKQYDHILVNLSQTAEFTGRAGVFDMAEHFDISQEQAIDISDHQPVWAEFS 310
>gi|310639778|ref|YP_003944536.1| exodeoxyribonuclease iii rgfb-like protein [Paenibacillus polymyxa
SC2]
gi|309244728|gb|ADO54295.1| Exodeoxyribonuclease III RgfB-like protein [Paenibacillus polymyxa
SC2]
Length = 273
Score = 34.4 bits (77), Expect = 5.0, Method: Composition-based stats.
Identities = 12/102 (11%), Positives = 26/102 (25%), Gaps = 2/102 (1%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
P + GDFN G+ D+ M + + + + +
Sbjct: 174 APAPVFVMGDFNNAAEVRGEGYDY--VMQSGWSDTYSNAAVRDAGHTVIKAIAGWESNAE 231
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + S +S H + +E +
Sbjct: 232 PLRIDYIFSSKAAQVQSSAVVLNGKTGPVVSDHFGVAVELEL 273
>gi|254452409|ref|ZP_05065846.1| endonuclease/exonuclease/phosphatase family [Octadecabacter
antarcticus 238]
gi|198266815|gb|EDY91085.1| endonuclease/exonuclease/phosphatase family [Octadecabacter
antarcticus 238]
Length = 290
Score = 34.4 bits (77), Expect = 5.0, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 27/117 (23%), Gaps = 15/117 (12%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L + +P + GDFN S ++ + Q
Sbjct: 185 KQLSVALVAARIAEPAARMPVFVIGDFNAIRGST-----TLGVLEDANVTFWPVQGSTFH 239
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS-DLDTRRSKLSTHCPLTIEY 118
+ + + S V S + H P+ ++
Sbjct: 240 ---------FNRGLNLFPAIDHIGGSDGISPVGKTFSVRGRFDGEWATDHYPVVGDF 287
>gi|147803604|emb|CAN75353.1| hypothetical protein VITISV_030454 [Vitis vinifera]
Length = 1101
Score = 34.4 bits (77), Expect = 5.0, Method: Composition-based stats.
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 15/106 (14%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
P+ + GDFN ++ + + ++ D LI P + R+
Sbjct: 166 EEPWCLGGDFNVTLSQRDRSRQGSLNGAMRRFAQVVDDLALIDLPLQGGVYSWSGGRSNQ 225
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ + + + + S H P+ ++
Sbjct: 226 ------TWARLDRFLVSQGWLDI-FRGAXQCRLPRPTSDHFPILLK 264
>gi|109127402|ref|XP_001095110.1| PREDICTED: deoxyribonuclease-1 [Macaca mulatta]
Length = 282
Score = 34.4 bits (77), Expect = 5.0, Method: Composition-based stats.
Identities = 14/116 (12%), Positives = 40/116 (34%), Gaps = 5/116 (4%)
Query: 5 QGEWLKK-WADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + D + K G ++ GDFN + + + ++ + T
Sbjct: 165 EIDALYDVYLDVQDKWGLEDVMLMGDFNAGCSYVRPSQWSSIRLRTSPTFQWLIPDTADT 224
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTR--RSKLSTHCPLTI 116
+ + V ++ ++ +S ++ + + +S H P+ +
Sbjct: 225 TA-TSTHCAYDRIVVAGTLLQDAVVPDSALPFNFQAAYGLSDQLAQAISDHYPVEV 279
>gi|329767436|ref|ZP_08258961.1| hypothetical protein HMPREF0428_00658 [Gemella haemolysans M341]
gi|328836125|gb|EGF85816.1| hypothetical protein HMPREF0428_00658 [Gemella haemolysans M341]
Length = 264
Score = 34.4 bits (77), Expect = 5.0, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 2/95 (2%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
V GDFN DD+ + +D EK+ + +N S + + +
Sbjct: 169 VFMGDFNTDYFHQV--DDYKRILDKGLYDTYELAEKKDGGVTVYKNISGWEDSMCQKKLD 226
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
I+ + D +S H L +
Sbjct: 227 YVFINRKLDVKESFVIFNDENYPIISDHNGLEVTL 261
>gi|315633994|ref|ZP_07889283.1| conserved hypothetical protein [Aggregatibacter segnis ATCC 33393]
gi|315477244|gb|EFU67987.1| conserved hypothetical protein [Aggregatibacter segnis ATCC 33393]
Length = 292
Score = 34.4 bits (77), Expect = 5.0, Method: Composition-based stats.
Identities = 14/118 (11%), Positives = 32/118 (27%), Gaps = 24/118 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q L + Q P V++GDFN + + +
Sbjct: 197 EEQLRTLMQLVSQHQG---PLVLSGDFNS---------------WNGYRMRIIRELIKEF 238
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + + T ++ S H PL ++ +
Sbjct: 239 GLIEVPFAQDHRLRFLGNPLDHVFVRG------LNVLNATTEPTESSDHAPLLLDLEL 290
>gi|154272351|ref|XP_001537028.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409015|gb|EDN04471.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1753
Score = 34.4 bits (77), Expect = 5.0, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 31/121 (25%), Gaps = 9/121 (7%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN-RKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
LS E ++ + + ++ GDFN + GLL + +
Sbjct: 600 LSTMAEAIRA-----LNSPEDIIVLGDFNLHHPLWSSTHRHGGRGPSAQGLLTVIEEFQL 654
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
D D + + S H P+ + +D+
Sbjct: 655 QLLTEPGTPTHRWKDGESTIDLTFASEDLADRVTHCKVDREVDCD---SDHLPIALVFDW 711
Query: 121 E 121
Sbjct: 712 N 712
>gi|134057143|emb|CAK48746.1| unnamed protein product [Aspergillus niger]
Length = 1214
Score = 34.4 bits (77), Expect = 5.0, Method: Composition-based stats.
Identities = 12/123 (9%), Positives = 28/123 (22%), Gaps = 21/123 (17%)
Query: 19 TGIPFVIAGDFNRKINSIG-----------------DTDDFWQKMDPDGLLIRFPQEKES 61
++ GD N +I+SI + D + +
Sbjct: 1056 DHEICILNGDLNYRIDSIPRNVIIDDIRSNNLTKLLERDQLLASRRKNPGFRLRSFNEAP 1115
Query: 62 TCN-VIKRNKSSLDYFVIDRDNKNFLIDNSFSIV---SYDQSDLDTRRSKLSTHCPLTIE 117
+ D + + + Q + + S H P++
Sbjct: 1116 ITFAPTYKYDVGTDEYDSSDKKRAPAWCDRVLYRGLGRVRQLEYRRHEVRASDHRPVSAT 1175
Query: 118 YDF 120
+
Sbjct: 1176 FKL 1178
>gi|126640501|ref|YP_001083485.1| hypothetical protein A1S_0428 [Acinetobacter baumannii ATCC 17978]
Length = 326
Score = 34.4 bits (77), Expect = 5.0, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 16/106 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ ++ GD N S +Q++ +
Sbjct: 184 DQIKDLDESCIVMGDLNDVAWSRTTR--LFQRISGLLDPRVGRHFINTFH---------A 232
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
DY ++ + + + S H P+ +
Sbjct: 233 DYPLLRWSLDHIFHS-----TDFGLVKMQRLSHIGSDHFPVYVVLQ 273
>gi|255561811|ref|XP_002521915.1| type I inositol polyphosphate 5-phosphatase, putative [Ricinus
communis]
gi|223538953|gb|EEF40551.1| type I inositol polyphosphate 5-phosphatase, putative [Ricinus
communis]
Length = 426
Score = 34.4 bits (77), Expect = 5.1, Method: Composition-based stats.
Identities = 12/130 (9%), Positives = 27/130 (20%), Gaps = 23/130 (17%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+KI ++ GD N +I+ W + + L ++
Sbjct: 272 LPRKILDHDRVILLGDLNYRISLPEATTRLLVDKKEWNSLLENDQLRMELLSGQTFEGWH 331
Query: 67 K-----------------RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + + Q + S
Sbjct: 332 EGTIKFAPTYKYCPNSNVYFGCVEGKKGEKWRAPAWCDRIVWYGEGLKQHLYTRGEANFS 391
Query: 110 THCPLTIEYD 119
H P+ +
Sbjct: 392 DHRPVKAIFS 401
>gi|56460778|ref|YP_156059.1| hypothetical protein IL1677 [Idiomarina loihiensis L2TR]
gi|56179788|gb|AAV82510.1| Uncharacterized conserved membrane protein [Idiomarina loihiensis
L2TR]
Length = 351
Score = 34.4 bits (77), Expect = 5.1, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 25/111 (22%), Gaps = 16/111 (14%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A + P ++ GD N S ++K+ + +
Sbjct: 230 ARRVEPEKYPTIVTGDLNDVAWSRT--TLLFRKLSGLLDPRIGRGMFNTFHAEYWFARWP 287
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
LD+ + S H PL E G
Sbjct: 288 LDHIFHSHHFALVSMT--------------RLPGFGSDHFPLLTELALAPG 324
>gi|1079026|pir||B56679 probable reverse transcriptase - house mosquito
gi|403081|gb|AAA28291.1| reverse transcriptase [Culex pipiens]
Length = 887
Score = 34.4 bits (77), Expect = 5.1, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 29/107 (27%), Gaps = 10/107 (9%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
++ + F+I GDFN K S K++ +G ++ + +
Sbjct: 128 LNKLTRHRSRFLIIGDFNAKHQS-----WNNSKVNSNGKILFRDCTSGLYSVLYPNGPTC 182
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
L + S S H P+T
Sbjct: 183 FSSVRNPSTIDLVLTNQSQYCGPLVTHADFD-----SDHLPVTFSLS 224
>gi|224582099|ref|YP_002635897.1| hypothetical protein SPC_0268 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|254807345|sp|C0Q6M7|YAFD_SALPC RecName: Full=UPF0294 protein yafD
gi|224466626|gb|ACN44456.1| hypothetical protein SPC_0268 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 266
Score = 34.4 bits (77), Expect = 5.1, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R ++
Sbjct: 176 DQIAHHSGPVIMAGDFNTW--SRPRMNALYRFAREMSLRQVRFTD-------DQRRRAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 227 RPLDFVFYRGLNVNEASVLVT------------RASDHNPLLVEFS 260
>gi|221131734|ref|XP_002163089.1| PREDICTED: similar to prefoldin subunit 2 [Hydra magnipapillata]
Length = 445
Score = 34.4 bits (77), Expect = 5.1, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 40/133 (30%), Gaps = 18/133 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINS-----------IGDTDDFWQKMDPDGLLI 53
Q + +K D + ++AGDF + + L
Sbjct: 171 QLDTVKGLIDS-YEGNGNIILAGDFQSFPHQMYDLFERSNSKRNSYSVHLSEFLKTNQLE 229
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
K S N R+++ +F + S ++ + LS H P
Sbjct: 230 LVDVTKGSGPNYTYRHQTLP----NSSYIDHFAVSKYTSFINLKCIVHPECSNNLSDHLP 285
Query: 114 --LTIEYDFEKGN 124
+++E + + N
Sbjct: 286 LSISVEVKYTECN 298
>gi|160888829|ref|ZP_02069832.1| hypothetical protein BACUNI_01248 [Bacteroides uniformis ATCC 8492]
gi|317479428|ref|ZP_07938561.1| endonuclease/Exonuclease/phosphatase [Bacteroides sp. 4_1_36]
gi|156861728|gb|EDO55159.1| hypothetical protein BACUNI_01248 [Bacteroides uniformis ATCC 8492]
gi|316904394|gb|EFV26215.1| endonuclease/Exonuclease/phosphatase [Bacteroides sp. 4_1_36]
Length = 352
Score = 34.4 bits (77), Expect = 5.1, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 31/150 (20%), Gaps = 35/150 (23%)
Query: 6 GEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ------ 57
+K D I+ V+ GDFN + + PQ
Sbjct: 201 ARKVKHAIDSLYTIRRHPQIVLLGDFNDYPENKSVKEVLEAAAPSTLQDSLRPQKLYHLL 260
Query: 58 ------EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--------SDLDT 103
K + LD+ ++ D D
Sbjct: 261 AGKAKTRKHFGSYKYQGEWGLLDHIIVSGTLLQEHAPLYTEEAKADVFCLPFLLTRDKKY 320
Query: 104 RRSKL-------------STHCPLTIEYDF 120
+ S H P+ E+
Sbjct: 321 GGQQPFRTYYGMKYQGGYSDHLPVYAEFRL 350
>gi|125550583|gb|EAY96292.1| hypothetical protein OsI_18191 [Oryza sativa Indica Group]
Length = 530
Score = 34.4 bits (77), Expect = 5.1, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 29/125 (23%), Gaps = 25/125 (20%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF-------WQKMDPDGLLIRFPQEKESTCNV-- 65
+ I + GD N ++ G D WQ + L +
Sbjct: 361 ETILEHDKIIWLGDLNYRLTGSGSGDTQELLDKNDWQALLQKDQLRVEQRAGRVFGGWEE 420
Query: 66 -------IKRNKSSLD---------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + D + + + +Q S+ S
Sbjct: 421 GQISFPPTYKYLADSDTYAAAAAFTSSASKKRTPAWCDRILWRGSGMEQVRYARGESRFS 480
Query: 110 THCPL 114
H P+
Sbjct: 481 DHRPV 485
>gi|52353504|gb|AAU44070.1| 'putative inositol-1,4,5-trisphosphate 5-phosphatase' [Oryza sativa
Japonica Group]
gi|222629963|gb|EEE62095.1| hypothetical protein OsJ_16879 [Oryza sativa Japonica Group]
Length = 530
Score = 34.4 bits (77), Expect = 5.1, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 29/125 (23%), Gaps = 25/125 (20%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF-------WQKMDPDGLLIRFPQEKESTCNV-- 65
+ I + GD N ++ G D WQ + L +
Sbjct: 361 ETILEHDKIIWLGDLNYRLTGSGSGDTQELLDKNDWQALLQKDQLRVEQRAGRVFGGWEE 420
Query: 66 -------IKRNKSSLD---------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + D + + + +Q S+ S
Sbjct: 421 GQISFPPTYKYLADSDTYAAAAAFTSSASKKRTPAWCDRILWRGSGMEQVRYARGESRFS 480
Query: 110 THCPL 114
H P+
Sbjct: 481 DHRPV 485
>gi|240254013|ref|NP_172038.4| CVP2 (COTYLEDON VASCULAR PATTERN 2); hydrolase/ inositol
trisphosphate phosphatase [Arabidopsis thaliana]
gi|259016256|sp|Q9LR47|IP5P3_ARATH RecName: Full=Type I inositol-1,4,5-trisphosphate 5-phosphatase
CVP2; AltName: Full=Protein COTYLEDON VASCULAR PATTERN 2
gi|332189723|gb|AEE27844.1| Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Arabidopsis
thaliana]
Length = 617
Score = 34.4 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 26/123 (21%), Gaps = 22/123 (17%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIR-------------- 54
+ I + GD N ++ W+ + + L
Sbjct: 452 ENILQHDRVIWLGDLNYRIALSYRSAKALVEMQNWRALLENDQLRIEQKRGHVFKGWNEG 511
Query: 55 --FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ R + R + + Q S+ S H
Sbjct: 512 KIYFPPTYKYSRNSDRYSGDDLHPKEKRRTPAWCDRILWFGEGLHQLSYVRGESRFSDHR 571
Query: 113 PLT 115
P+
Sbjct: 572 PVY 574
>gi|242042287|ref|XP_002468538.1| hypothetical protein SORBIDRAFT_01g047585 [Sorghum bicolor]
gi|241922392|gb|EER95536.1| hypothetical protein SORBIDRAFT_01g047585 [Sorghum bicolor]
Length = 491
Score = 34.4 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
RN + I + ++++ + + + + S H P+ I+
Sbjct: 34 TWRNNHHIAARYIKERLDRAVANSAWRRI-FPVVKVINGDPRHSDHRPIIID 84
>gi|262198476|ref|YP_003269685.1| endonuclease/exonuclease/phosphatase [Haliangium ochraceum DSM
14365]
gi|262081823|gb|ACY17792.1| Endonuclease/exonuclease/phosphatase [Haliangium ochraceum DSM
14365]
Length = 244
Score = 34.4 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 30/116 (25%), Gaps = 22/116 (18%)
Query: 8 WLKKWADQK----IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L+++ D P ++ GD N ++G + + P G +
Sbjct: 145 QLQRFLDSHPFTGFHQHTPVIVGGDLNDVWGTLGP-----KFLLPAGFRRMPKSPRTFPA 199
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D + Q + S H PL + +
Sbjct: 200 Y----------APMRALDGIYVRGSAEMRKLQRGQIAVARE---ASDHLPLIADIE 242
>gi|195615528|gb|ACG29594.1| type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Zea mays]
Length = 632
Score = 34.4 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 27/115 (23%), Gaps = 5/115 (4%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV--I 66
L D + + AG + + + + DG + +
Sbjct: 484 LNYRLDASYERAHELISAGSWRELAETDQLKRELRKGRAFDGWTEGVLEFAPTYKYELGS 543
Query: 67 KRNKSSLDY---FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+R D+ R + LS H P+T Y
Sbjct: 544 RRYVGVGDHQSQRGGGRRTPAWCDRVLSYGKGLRLLGYRRSELALSDHRPVTATY 598
>gi|254438485|ref|ZP_05051979.1| endonuclease/exonuclease/phosphatase family [Octadecabacter
antarcticus 307]
gi|198253931|gb|EDY78245.1| endonuclease/exonuclease/phosphatase family [Octadecabacter
antarcticus 307]
Length = 289
Score = 34.4 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 27/117 (23%), Gaps = 13/117 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ L + +P + GDFN S ++ + Q +
Sbjct: 184 RRLSAALVAQRIAEPMQRMPVFVIGDFNAIRGS-----ATLGLLEDANVTFWPAQGSKFH 238
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N ++D S + H P+ ++
Sbjct: 239 FNRGLNLFPAIDRIGGSERIVPVGETFSVRG--------QFDGEWATDHYPVVGDFR 287
>gi|196013219|ref|XP_002116471.1| hypothetical protein TRIADDRAFT_30983 [Trichoplax adhaerens]
gi|190581062|gb|EDV21141.1| hypothetical protein TRIADDRAFT_30983 [Trichoplax adhaerens]
Length = 284
Score = 34.4 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 23/112 (20%), Gaps = 8/112 (7%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDD-----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
P ++ GD N + IG G + + S
Sbjct: 149 AGNSPVILIGDLNFEPEDIGYRFITTSLDLKDAWLEAGDGVMLYTRNNIDYSDSLNTNSF 208
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQ---SDLDTRRSKLSTHCPLTIEYDFE 121
I++ L Q + S H + +
Sbjct: 209 TPANEIEKRIDYILYSGDHLKSQACQVTLGRIPDAAFNYSDHEGVEATFQLN 260
>gi|149914631|ref|ZP_01903161.1| endonuclease/exonuclease/phosphatase family protein [Roseobacter
sp. AzwK-3b]
gi|149811424|gb|EDM71259.1| endonuclease/exonuclease/phosphatase family protein [Roseobacter
sp. AzwK-3b]
Length = 210
Score = 34.4 bits (77), Expect = 5.2, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 26/114 (22%), Gaps = 22/114 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + Q +P V AGDFN N D + +
Sbjct: 110 QLGAINRALRQL--PPMPTVFAGDFNEWGNGAAL----------DAAVKLVRFLPAAASY 157
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R + + +S S H P+ +
Sbjct: 158 PAPRPVA---------PLDRIALSPDLLALSSGVHRG-RPAHIASDHLPVWADL 201
>gi|116251927|ref|YP_767765.1| hypothetical protein RL2169 [Rhizobium leguminosarum bv. viciae
3841]
gi|115256575|emb|CAK07661.1| hypothetical exported protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 417
Score = 34.4 bits (77), Expect = 5.3, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN 30
L QQ L+KW ++K V+ GDFN
Sbjct: 244 LQQQVVPLEKWIERKSADTNRVVVLGDFN 272
>gi|89054269|ref|YP_509720.1| endonuclease/exonuclease/phosphatase [Jannaschia sp. CCS1]
gi|88863818|gb|ABD54695.1| Endonuclease/exonuclease/phosphatase [Jannaschia sp. CCS1]
Length = 299
Score = 34.4 bits (77), Expect = 5.3, Method: Composition-based stats.
Identities = 13/121 (10%), Positives = 27/121 (22%), Gaps = 24/121 (19%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E L P +I GDFN ++ + +
Sbjct: 203 QVEELTPIVAAL---EGPVLIGGDFNMVP-----WSWVMREFERASGSRVPHPLSGTIQL 254
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+D+ ++ + S H + ++ +
Sbjct: 255 FDGWFAPPIDHVILPGRGGIQSVHPRLG----------------SDHRAIVGMFEITEPG 298
Query: 125 V 125
V
Sbjct: 299 V 299
>gi|50310815|ref|XP_455430.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644566|emb|CAG98138.1| KLLA0F07733p [Kluyveromyces lactis]
Length = 371
Score = 34.4 bits (77), Expect = 5.3, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 34/137 (24%), Gaps = 20/137 (14%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN---------------RKINSIGDTDDFWQKM 46
L + + L + + + + +GDFN K I + +
Sbjct: 234 LQRIIKGLLMGIEGVTYSNVKILFSGDFNSSRDSLVIKFLNGKIIKHGDINLQNPMRAYL 293
Query: 47 DPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYD----QSDLD 102
TC + K DY + S VS +
Sbjct: 294 SHSIYDDIPEDAYVHTCY-SGKLKGIFDYIWFHPGDFEVEKVLSGQEVSKELTHLNDFGL 352
Query: 103 TRRSKLSTHCPLTIEYD 119
+ S H P+ E
Sbjct: 353 PNKYHPSDHIPVLTELR 369
>gi|45680450|gb|AAS75251.1| 'hypothetical protein similar to inositol-1,4,5-trisphosphate'
[Oryza sativa Japonica Group]
Length = 513
Score = 34.4 bits (77), Expect = 5.3, Method: Composition-based stats.
Identities = 15/125 (12%), Positives = 29/125 (23%), Gaps = 25/125 (20%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDF-------WQKMDPDGLLIRFPQEKESTCNV-- 65
+ I + GD N ++ G D WQ + L +
Sbjct: 344 ETILEHDKIIWLGDLNYRLTGSGSGDTQELLDKNDWQALLQKDQLRVEQRAGRVFGGWEE 403
Query: 66 -------IKRNKSSLD---------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
+ + D + + + +Q S+ S
Sbjct: 404 GQISFPPTYKYLADSDTYAAAAAFTSSASKKRTPAWCDRILWRGSGMEQVRYARGESRFS 463
Query: 110 THCPL 114
H P+
Sbjct: 464 DHRPV 468
>gi|301780562|ref|XP_002925696.1| PREDICTED: sphingomyelin phosphodiesterase 2-like [Ailuropoda
melanoleuca]
gi|281346608|gb|EFB22192.1| hypothetical protein PANDA_015236 [Ailuropoda melanoleuca]
Length = 423
Score = 34.4 bits (77), Expect = 5.3, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 29/125 (23%), Gaps = 11/125 (8%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF-WQKMDPDGLLI-------RFP 56
Q L ++ K ++ GD N +G W + L
Sbjct: 155 QAWELAQFIHHTSKKADVVLLCGDLNLHPKDLGCRLLKEWTGLHDAYLETRDFKGSEEGC 214
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDN---SFSIVSYDQSDLDTRRSKLSTHCP 113
C V +R + + + S + + LS H
Sbjct: 215 TMVPENCYVNQRELEPFPFGIRIDYVLYKAVSGFYISCKTLRTTTGRDPHSGTPLSDHEA 274
Query: 114 LTIEY 118
L
Sbjct: 275 LMATL 279
>gi|242050584|ref|XP_002463036.1| hypothetical protein SORBIDRAFT_02g036585 [Sorghum bicolor]
gi|241926413|gb|EER99557.1| hypothetical protein SORBIDRAFT_02g036585 [Sorghum bicolor]
Length = 984
Score = 34.4 bits (77), Expect = 5.3, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 9/116 (7%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIG-----DTDDFWQKMDPDGLLIRFPQEKESTC 63
L++ D + P+++ GDFN + + +++ + S
Sbjct: 17 LQELRDIRAACARPWIVCGDFNLIYQAADKNHGRLHRGHMRAFRDTIDVLQLQELHLSGR 76
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
N + + Y L + S S H PL + +
Sbjct: 77 LYTWSNG---RDSPTLERIDRAFASVEWLQL-YPFHHLRSLASDCSDHSPLLLVLN 128
>gi|254450011|ref|ZP_05063448.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
gi|198264417|gb|EDY88687.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
Length = 165
Score = 34.4 bits (77), Expect = 5.3, Method: Composition-based stats.
Identities = 21/115 (18%), Positives = 30/115 (26%), Gaps = 19/115 (16%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + Q V AGDFN +S GL Q+ T
Sbjct: 70 QAKRALTLLSQIASPQDDIVFAGDFNVLSDSE-----TLAIFADCGLRDLVGQQDTRTAL 124
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R L+ S + S++ +S H PL +
Sbjct: 125 C----------PKAIRHANYMLVTASVDVRSFEVPANPV----VSDHRPLILSIS 165
>gi|218197822|gb|EEC80249.1| hypothetical protein OsI_22205 [Oryza sativa Indica Group]
Length = 592
Score = 34.4 bits (77), Expect = 5.4, Method: Composition-based stats.
Identities = 11/124 (8%), Positives = 27/124 (21%), Gaps = 26/124 (20%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRF------------------- 55
++I + GD N +++ D+ ++ +
Sbjct: 422 ERILDHDRMIWLGDLNYRMSLS--YDETRTLLEDNDWDALLEKDQLLIEREAGRVFRGWN 479
Query: 56 -----PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLST 110
+ R + + +Q S+ S
Sbjct: 480 EGKICFAPTYKYTHNSDAYAGETAKSKKKRRTPAWCDRILWQGDGIEQLQYLRGESRFSD 539
Query: 111 HCPL 114
H P+
Sbjct: 540 HRPV 543
>gi|66734174|gb|AAY53484.1| endonuclease reverse transcriptase [Bos taurus]
Length = 1272
Score = 34.4 bits (77), Expect = 5.4, Method: Composition-based stats.
Identities = 12/125 (9%), Positives = 34/125 (27%), Gaps = 13/125 (10%)
Query: 11 KWADQKIKT-----GIPFVIAGDFNRKINSIGDT-----DDFWQKMDPDGLLIRFPQEKE 60
++ Q + + +I GDFN + + + + Q ++ +
Sbjct: 122 QYVRQMLTSMKGEINNNTIIVGDFNTPLTPMDRSTKQKINKETQTLNDTIDQLDLIDIYR 181
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
S + L + + S S H + ++ ++
Sbjct: 182 SFHPKTMNFTFFSSAHGTFSRIDHILGHKASLGKFKKIEIIP---SIFSDHNAVRLDLNY 238
Query: 121 EKGNV 125
+ +
Sbjct: 239 RRKTI 243
>gi|293334429|ref|NP_001167881.1| hypothetical protein LOC100381588 [Zea mays]
gi|223944607|gb|ACN26387.1| unknown [Zea mays]
Length = 534
Score = 34.4 bits (77), Expect = 5.4, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 28/123 (22%), Gaps = 22/123 (17%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIRFPQEKESTCNVI-- 66
+ I + GD N ++ W+ + L R +
Sbjct: 361 ETILEHDRIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQLTREQRGGRVFPGWNEG 420
Query: 67 -------KRNKSSLD-------YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ ++ D + + + Q S+ S H
Sbjct: 421 RIYFPPTYKYSNNSDKYAGEDMNQKEKKRTPAWCDRILWYGRGLSQLSYVRGESRFSDHR 480
Query: 113 PLT 115
P+
Sbjct: 481 PVY 483
>gi|242817518|ref|XP_002486972.1| endonuclease/exonuclease/phosphatase family protein [Talaromyces
stipitatus ATCC 10500]
gi|218713437|gb|EED12861.1| endonuclease/exonuclease/phosphatase family protein [Talaromyces
stipitatus ATCC 10500]
Length = 334
Score = 34.4 bits (77), Expect = 5.4, Method: Composition-based stats.
Identities = 12/112 (10%), Positives = 28/112 (25%), Gaps = 9/112 (8%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
V+AGDFN + ++ + + D D
Sbjct: 223 VVLAGDFNSQETQEAYQTLTAKESILVDSQKITKATEHYGNEITWTGFGYEDEPKSRIDY 282
Query: 83 KNF--------LIDNSFSIVSYDQ-SDLDTRRSKLSTHCPLTIEYDFEKGNV 125
+ ++ + Y + S H + ++ D ++
Sbjct: 283 ILLGPVDKSSDEPHHRWNSIGYAVLASRFDDGVWNSDHRAVVVDADLADPSI 334
>gi|330828535|ref|YP_004391487.1| succinyl-CoA synthetase subunit alpha [Aeromonas veronii B565]
gi|328803671|gb|AEB48870.1| Succinyl-CoA synthetase, alpha subunit [Aeromonas veronii B565]
Length = 453
Score = 34.4 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 31/136 (22%)
Query: 17 IKTGIPFVIAGDFNRKI-----NSIGDTDDFWQKMDPDGLLI---RFPQEKESTCNVIKR 68
+ FVIAGD N + D + + E C
Sbjct: 318 LAKNAKFVIAGDLNADPLTGDGDLTAIQDLLNNPLMNQAITNGTLIPVSEGGPECVSKGT 377
Query: 69 NKSSLDYFVIDRDN--------KNFLIDNS--------FSIVSYDQSDLDTRRSKL---- 108
+ + + + F S++ +KL
Sbjct: 378 DCKRNLNRPNPERITNSSVLQLDHVIPSANLNAVKSGVFWPASFEAGYHLVYDAKLGIAK 437
Query: 109 ---STHCPLTIEYDFE 121
S H + ++ +
Sbjct: 438 GVSSDHRMVWVDLKLD 453
>gi|269963240|ref|ZP_06177574.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269832045|gb|EEZ86170.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 317
Score = 34.4 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 17/134 (12%)
Query: 5 QGEWLKKWADQKIK-TGIPFVIAGDFNRKINSIGDTDDFWQKMDP--------DGLLIRF 55
+ L+ ++ +P V+ GD N+ I S + + DG ++
Sbjct: 183 EAAMLRDVMQRQYALNSMPTVLMGDMNQGITSTSVNNVLTEHYGDSVTDLQLNDGWELQV 242
Query: 56 PQEKESTCNVIKRNKSS--LDYFVIDRDNKNFLIDNSFSIVSYDQSDL------DTRRSK 107
ES LDY ++ ++ + + +Y D R
Sbjct: 243 TPSLESRPATHYHFAKGNVLDYILLSQEFDAHADVSIAEVTNYQVLDAHLINPSFERDKN 302
Query: 108 LSTHCPLTIEYDFE 121
S H + + + +
Sbjct: 303 ASDHAFVALTVEIK 316
>gi|255552766|ref|XP_002517426.1| type I inositol polyphosphate 5-phosphatase, putative [Ricinus
communis]
gi|223543437|gb|EEF44968.1| type I inositol polyphosphate 5-phosphatase, putative [Ricinus
communis]
Length = 437
Score = 34.4 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 32/126 (25%), Gaps = 24/126 (19%)
Query: 20 GIPFVIAGDFNRKINSIG----------------DTDDFWQKMDPDGLL--------IRF 55
GD N ++ + D ++++ G+
Sbjct: 275 HDRIFWFGDLNYRLYLEDSLARYLIKQNDWKALQEFDQLRKELEDGGVFQGWREGNIKFA 334
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
P K S+ N + + + + + Q SK S H P++
Sbjct: 335 PTYKYSSSNCNRYSGGLPSRTGEKQRTPAWCDRILWYGKGVKQLSYFRSESKFSDHRPVS 394
Query: 116 IEYDFE 121
+
Sbjct: 395 ALFSIP 400
>gi|221474789|ref|NP_723735.2| CG31759, isoform C [Drosophila melanogaster]
gi|221474791|ref|NP_723736.2| CG31759, isoform D [Drosophila melanogaster]
gi|220902023|gb|AAN10808.2| CG31759, isoform C [Drosophila melanogaster]
gi|220902024|gb|AAN10809.2| CG31759, isoform D [Drosophila melanogaster]
Length = 564
Score = 34.4 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 12/121 (9%), Positives = 22/121 (18%), Gaps = 20/121 (16%)
Query: 23 FVIAGDFNRKIN------------SIGDTDDFWQKMDPDGLLIRFPQ-----EKESTCNV 65
+ GDFN D + +
Sbjct: 444 LIFCGDFNSVPECGIYKLMTEQLAEKTLEDWQSNAEQAVSNVELAQPFKMASAYGAPEYT 503
Query: 66 IKR--NKSSLDYFVI-DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
LDY + + + + + S H L + F+
Sbjct: 504 HYTTLFAGCLDYVFYQNDRFEVLKVVPLPTEEELKANTAIPSAVFPSDHVALVADLKFKS 563
Query: 123 G 123
Sbjct: 564 D 564
>gi|254447779|ref|ZP_05061244.1| endonuclease/exonuclease/phosphatase family protein [gamma
proteobacterium HTCC5015]
gi|198262559|gb|EDY86839.1| endonuclease/exonuclease/phosphatase family protein [gamma
proteobacterium HTCC5015]
Length = 246
Score = 34.4 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 14/113 (12%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L + + +IAGDFN ++ + K +
Sbjct: 147 LSDRIESHVPHHEALLIAGDFNDWRQRCDRY---LRQHSEVEEVFEAHLGKVAPSFPAWY 203
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + Q LS H PL++E+D+
Sbjct: 204 ------PLLKVDRVYARGVSVNAVKRLTGQP-----WRGLSDHIPLSVEFDWP 245
>gi|154276646|ref|XP_001539168.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150414241|gb|EDN09606.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1913
Score = 34.4 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 16/121 (13%), Positives = 31/121 (25%), Gaps = 9/121 (7%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN-RKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
LS E ++ + + ++ GDFN + GLL + +
Sbjct: 760 LSTMAEAIRA-----LNSPEDIIVLGDFNLHHPLWSSTHRHGGRGPSAQGLLTVIEEFQL 814
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
D D + + S H P+ + +D+
Sbjct: 815 QLLTKPGTPTHRWKDGESTIDLTFASEDLADRVTHCKVDREVDCD---SDHLPIALVFDW 871
Query: 121 E 121
Sbjct: 872 N 872
>gi|47900416|gb|AAT39210.1| 'putative inositol-1,4,5-trisphosphate phosphatase' [Oryza sativa
Japonica Group]
Length = 569
Score = 34.4 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 26/110 (23%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L + + + D++ + + + DG + +
Sbjct: 426 LNYRINLSYERAHELISKQDWDGLFENDQLKRELSKGHTFDGWIEGDISFPPTYKYEFDS 485
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K D R + KLS H P+T +
Sbjct: 486 EKYVSDEPKSGRRTPAWCDRILSRGKGIRLISYRRGELKLSDHRPVTAVF 535
>gi|17862022|gb|AAL39488.1| LD05405p [Drosophila melanogaster]
Length = 526
Score = 34.4 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 12/121 (9%), Positives = 22/121 (18%), Gaps = 20/121 (16%)
Query: 23 FVIAGDFNRKIN------------SIGDTDDFWQKMDPDGLLIRFPQ-----EKESTCNV 65
+ GDFN D + +
Sbjct: 406 LIFCGDFNSVPECGIYKLMTEQLAEKTLEDWQSNAEQAVSNVELAQPFKMASAYGAPEYT 465
Query: 66 IKR--NKSSLDYFVI-DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
LDY + + + + + S H L + F+
Sbjct: 466 HYTTLFAGCLDYVFYQNDRFEVLKVVPLPTEEELKANTAIPSAVFPSDHVALVADLKFKS 525
Query: 123 G 123
Sbjct: 526 D 526
>gi|201066143|gb|ACH92481.1| FI09011p [Drosophila melanogaster]
Length = 603
Score = 34.4 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 12/121 (9%), Positives = 22/121 (18%), Gaps = 20/121 (16%)
Query: 23 FVIAGDFNRKIN------------SIGDTDDFWQKMDPDGLLIRFPQ-----EKESTCNV 65
+ GDFN D + +
Sbjct: 483 LIFCGDFNSVPECGIYKLMTEQLAEKTLEDWQSNAEQAVSNVELAQPFKMASAYGAPEYT 542
Query: 66 IKR--NKSSLDYFVI-DRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
LDY + + + + + S H L + F+
Sbjct: 543 HYTTLFAGCLDYVFYQNDRFEVLKVVPLPTEEELKANTAIPSAVFPSDHVALVADLKFKS 602
Query: 123 G 123
Sbjct: 603 D 603
>gi|218264874|ref|ZP_03478549.1| hypothetical protein PRABACTJOHN_04259 [Parabacteroides johnsonii
DSM 18315]
gi|218221713|gb|EEC94363.1| hypothetical protein PRABACTJOHN_04259 [Parabacteroides johnsonii
DSM 18315]
Length = 297
Score = 34.4 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 13/155 (8%), Positives = 33/155 (21%), Gaps = 42/155 (27%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDP--------------- 48
++ + L + ++ GDFN D + ++
Sbjct: 145 KEAQMLTSYIQDNQLDN--CMVMGDFNAYSPFDADWVETHAQLIENMQKWDAEQETYRNM 202
Query: 49 ------------------DGLLIRFPQEKESTCNV----IKRNKSSLDYFVIDRDNKNFL 86
+ + + T I L
Sbjct: 203 RDGRFDYSVLSKFLSIGLTDICRLYVPADKRTTFPAAFLYGWQHGDTRLHGIGERLDYIL 262
Query: 87 IDNSF--SIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ S + + +S H P++++
Sbjct: 263 VSPSLVSRCLDARIHNGI-DTEGISDHYPVSVDLQ 296
>gi|213155867|ref|YP_002317912.1| endonuclease/exonuclease/phosphatase [Acinetobacter baumannii
AB0057]
gi|213055027|gb|ACJ39929.1| endonuclease/exonuclease/phosphatase [Acinetobacter baumannii
AB0057]
Length = 379
Score = 34.4 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 16/106 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ ++ GD N S +Q++ +
Sbjct: 231 DQIKDLDESCIVMGDLNDVAWSRTTR--LFQRISGLLDPRVGRHFINTFH---------A 279
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
DY ++ + + + S H P+ +
Sbjct: 280 DYPLLRWSLDHIFHS-----TDFGLVKMQRLSHIGSDHFPVYVVLQ 320
>gi|226498484|ref|NP_001147951.1| type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Zea mays]
gi|195614776|gb|ACG29218.1| type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Zea mays]
Length = 639
Score = 34.4 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 27/119 (22%), Gaps = 9/119 (7%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV--I 66
L D + + AG + + + + DG + +
Sbjct: 487 LNYRLDASYERAHELISAGSWRELAETDQLKRELRKGRAFDGWTEGVLEFAPTYKYELGS 546
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSY-------DQSDLDTRRSKLSTHCPLTIEY 118
+R D+ + + LS H P+T Y
Sbjct: 547 RRYVGVGDHQGQSQSQRGGGRRTPAWCDRVLSYGKGLRLLGYRRSELALSDHRPVTATY 605
>gi|108709244|gb|ABF97039.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1210
Score = 34.4 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 18/130 (13%)
Query: 7 EWLKKWADQK-IKTGIPFVIAGDFNRK--------INSIGDTDDFWQKMDPDGLLIRFPQ 57
+ +W + I+ ++I GDFN + + M + LI P
Sbjct: 558 DVFVQWMNSLDIEPNENWIIMGDFNFYRFVQNRNRPGGDMNDIFLFNDMISNLGLIEIPL 617
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ S S++ + I S+ ++SY + + +S H PL ++
Sbjct: 618 KDRSFTW------SNMHDSPLLEQLDWVFISPSW-LISYPNTLALSMIKHISDHVPLKVQ 670
Query: 118 YD--FEKGNV 125
+ NV
Sbjct: 671 VQTAIPRANV 680
>gi|295096917|emb|CBK86007.1| Uncharacterized protein conserved in bacteria [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 259
Score = 34.4 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R K+
Sbjct: 169 DQIAHHSGPIIMAGDFNAW--SRPRMNALYRFAREMSLREVRFND-------DQRKKAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D ++ S H PL +E+
Sbjct: 220 RPL------------DFVFYRGLSVHDASVLVTRASDHNPLLVEFS 253
>gi|260788648|ref|XP_002589361.1| hypothetical protein BRAFLDRAFT_218091 [Branchiostoma floridae]
gi|229274538|gb|EEN45372.1| hypothetical protein BRAFLDRAFT_218091 [Branchiostoma floridae]
Length = 275
Score = 34.4 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 8/125 (6%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD-FWQKMDPDGLLIRFPQEKESTC 63
Q L ++ + ++AGD N + +G M+ L ++S
Sbjct: 151 QAFELSQFIRHTGQCADVNILAGDLNNQPFELGLKIIQSNTGMEDAWLTAEHRNAEDSGL 210
Query: 64 NV---IKRNKSSLDYFVIDRDNKNFLIDN--SFSIVSYDQ--SDLDTRRSKLSTHCPLTI 116
DY D + V + + + S H +
Sbjct: 211 TWNLDDNNFTCYPDYPPCRYDYVLYKGSARCRVKCVHCETTMHKVPGKPFNYSDHEGVVA 270
Query: 117 EYDFE 121
+ E
Sbjct: 271 HLELE 275
>gi|294501930|ref|YP_003565630.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
megaterium QM B1551]
gi|295707279|ref|YP_003600354.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
megaterium DSM 319]
gi|294351867|gb|ADE72196.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
megaterium QM B1551]
gi|294804938|gb|ADF42004.1| endonuclease/exonuclease/phosphatase family protein [Bacillus
megaterium DSM 319]
Length = 261
Score = 34.4 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 8/117 (6%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
QQ + L PF + GDFN N ++ + + GL + +
Sbjct: 150 FKQQVDTLLAHV----HKDNPFFLLGDFN---NDAHRRNEGYDYLLSQGLYDTYTLSNKK 202
Query: 62 TCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ K N + D L ++ I S +S H +++E
Sbjct: 203 DSGITVKGNIAGWDDNERALRLDLILSSHAQDIQSSTVVFNGIHYPVVSDHFGVSVE 259
>gi|291240985|ref|XP_002740396.1| PREDICTED: Transposon TX1 uncharacterized 149 kDa protein-like
[Saccoglossus kowalevskii]
Length = 1297
Score = 34.4 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 7/106 (6%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
++ ++ GDFN +N D + ++ P +++ + + +R +
Sbjct: 133 ELDKNDCIIVGGDFNCTLNPSLDRNRTFEPNAPSTQVLQNIVNRFKFIDAWRRFHGNTRA 192
Query: 76 FVIDR-----DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
F R F I N+ + S L S LS H P+ +
Sbjct: 193 FTWSRGDSYSRLDRFYITNTLASKI--ISVLIDSASTLSDHKPIKL 236
>gi|260549149|ref|ZP_05823370.1| endonuclease/Exonuclease/phosphatase [Acinetobacter sp. RUH2624]
gi|260407877|gb|EEX01349.1| endonuclease/Exonuclease/phosphatase [Acinetobacter sp. RUH2624]
Length = 373
Score = 34.4 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 16/106 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ ++ GD N S +Q++ +
Sbjct: 231 DQIKDLDESCIVMGDLNDVAWSRTTR--LFQRISGLLDPRVGRHFINTFH---------A 279
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
DY ++ + + + S H P+ +
Sbjct: 280 DYSLLRWSLDHIFHS-----TDFGLVKMQRLSHIGSDHFPVYVVLQ 320
>gi|189242290|ref|XP_966849.2| PREDICTED: similar to endonuclease and reverse transcriptase-like
protein [Tribolium castaneum]
Length = 859
Score = 34.4 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 10/115 (8%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L++ P + AGDFN K + ++ + +G + ++ +
Sbjct: 119 QIPILEEDLQTLFDGNTPTIAAGDFNAKHI-----NWGSRRSNRNGNFLNGFTDQNLDIS 173
Query: 65 VI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
V+ + D + I + Q L S H P+ ++
Sbjct: 174 VMAPVEPTFYRNSDGAADILDVAIVKNVVH----QVRLTAINDLSSDHNPVLMQI 224
>gi|108762299|ref|YP_631376.1| endonuclease/exonuclease/phosphatase family protein [Myxococcus
xanthus DK 1622]
gi|108466179|gb|ABF91364.1| endonuclease/exonuclease/phosphatase family [Myxococcus xanthus DK
1622]
Length = 307
Score = 34.4 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 21/118 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q E + D TG VIAGDFN + G +
Sbjct: 211 QAETI---IDAMEGTGPVQVIAGDFNT--SDPGSLRQMVKLFSERD-----------FQW 254
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ ++D + + + S H P+ + + + +
Sbjct: 255 ASEGVGDTVDSVIGGLPLDFVF-AQGLAPLERGVDRRPAG----SDHHPVWVRFAWPR 307
>gi|50551027|ref|XP_502987.1| YALI0D18458p [Yarrowia lipolytica]
gi|49648855|emb|CAG81179.1| YALI0D18458p [Yarrowia lipolytica]
Length = 454
Score = 34.4 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 14/138 (10%), Positives = 33/138 (23%), Gaps = 18/138 (13%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q + + A + + G ++ GD N + +S+ + D R +
Sbjct: 201 QAWEMARIAKRSMDAGNLTIVTGDLNSRPSSLTHQLFENMALLQDAWESRHGEFSGDLSE 260
Query: 65 ------------------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
R L + +D
Sbjct: 261 MTPEQQIEEAGVTCNSRLNSWRASRPLSDACRLDYIFFDPSRATVREARVAFTDKIEGGC 320
Query: 107 KLSTHCPLTIEYDFEKGN 124
+S H ++ ++ +
Sbjct: 321 SVSDHFGVSAVFELTPQD 338
>gi|326776703|ref|ZP_08235968.1| Endonuclease/exonuclease/phosphatase [Streptomyces cf. griseus
XylebKG-1]
gi|326657036|gb|EGE41882.1| Endonuclease/exonuclease/phosphatase [Streptomyces cf. griseus
XylebKG-1]
Length = 399
Score = 34.4 bits (77), Expect = 5.7, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 26/119 (21%), Gaps = 19/119 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ E L++ D G P V+AGD N + F D
Sbjct: 286 DRHFEALREDLD---ANGHPVVLAGDLNVLPGTGDLR-WFDGLRDAADAGDSVYPATFPV 341
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + D LSTH + +
Sbjct: 342 SGP------------ALWRLDWAFVSPRIDLHRQSVQDPPAA---LSTHRLIDLRLSLP 385
>gi|226226595|ref|YP_002760701.1| hypothetical protein GAU_1189 [Gemmatimonas aurantiaca T-27]
gi|226089786|dbj|BAH38231.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
Length = 549
Score = 34.4 bits (77), Expect = 5.7, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 36/127 (28%), Gaps = 13/127 (10%)
Query: 5 QGEWLKKWADQKIKT--GIPFVIAGDFNRKINSIGDTDDF---WQKMDPDGLLIRFPQEK 59
Q E ++++ +I P V+ GDFN + + + E+
Sbjct: 421 QVEAIRRYIRAEIAQRGDFPLVVGGDFNAVGSFRSVRSLIPEPTEHPSLRLAQVLRLAEQ 480
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSK--------LSTH 111
+ + F + F + D SD + + +S H
Sbjct: 481 SMVTWQSVEAAQFSPGQLDLTLFRGFNQNGGFVFTTEDLSDRLLAKLRMTRETSASVSDH 540
Query: 112 CPLTIEY 118
+ +
Sbjct: 541 LIVVTDL 547
>gi|256083628|ref|XP_002578043.1| hypothetical protein [Schistosoma mansoni]
gi|238663392|emb|CAZ34281.1| expressed protein [Schistosoma mansoni]
Length = 898
Score = 34.4 bits (77), Expect = 5.7, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 30/134 (22%), Gaps = 27/134 (20%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ--------EKESTCNVIK 67
IP V GD N+ S T P + + N +
Sbjct: 759 HFSKPIPIVFCGDINQCPGSDVYTALTQGNGFPSDDEVAYQPIFESAYVNNPPEFTNWVP 818
Query: 68 RNKSSLDYFVIDRDNKNFLID----------NSFSIVSYDQSDLD---------TRRSKL 108
+ LD + + D+ I +
Sbjct: 819 GFHNVLDVILYNTDSDLKCIHVLPIDPLQKIKELLTQLINADGQSVPDSSQLGLPNAYFP 878
Query: 109 STHCPLTIEYDFEK 122
S H L ++ ++
Sbjct: 879 SDHIALVADFSWDS 892
>gi|8778727|gb|AAF79735.1|AC005106_16 T25N20.12 [Arabidopsis thaliana]
Length = 609
Score = 34.4 bits (77), Expect = 5.7, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 26/123 (21%), Gaps = 22/123 (17%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDPDGLLIR-------------- 54
+ I + GD N ++ W+ + + L
Sbjct: 444 ENILQHDRVIWLGDLNYRIALSYRSAKALVEMQNWRALLENDQLRIEQKRGHVFKGWNEG 503
Query: 55 --FPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ R + R + + Q S+ S H
Sbjct: 504 KIYFPPTYKYSRNSDRYSGDDLHPKEKRRTPAWCDRILWFGEGLHQLSYVRGESRFSDHR 563
Query: 113 PLT 115
P+
Sbjct: 564 PVY 566
>gi|254517037|ref|ZP_05129095.1| endonuclease/exonuclease/phosphatase [gamma proteobacterium NOR5-3]
gi|219674542|gb|EED30910.1| endonuclease/exonuclease/phosphatase [gamma proteobacterium NOR5-3]
Length = 395
Score = 34.4 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 12/114 (10%), Positives = 28/114 (24%), Gaps = 12/114 (10%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI---RFPQEKESTCNVIKRNKSSLDY 75
G FV+ GD N + + + + + +
Sbjct: 280 RGDRFVVVGDLNASMEEGDARREGITALLGHEKVRRGLLPTSDGGRANRADSSFGPAHTA 339
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQ-----SDLDTRRSK----LSTHCPLTIEYDF 120
R + + + ++ D R K S H + ++ +
Sbjct: 340 SWGMRADYVIPSKSGWRVIDAGVFWPTPDDPLWRLVKKRSSSSDHRLVWMDLEL 393
>gi|147855242|emb|CAN79138.1| hypothetical protein VITISV_034815 [Vitis vinifera]
Length = 1596
Score = 34.4 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 13/102 (12%), Positives = 25/102 (24%), Gaps = 9/102 (8%)
Query: 21 IPFVIAGDFNRKINSIGDTDD-----FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
P+ I GDFN ++ + ++ + V S
Sbjct: 613 DPWCIGGDFNVVLSQRERSSQGRISGAMRRFAQVVDDLELLDLPLQGGVVSW---SGGRN 669
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ + S H P+ ++
Sbjct: 670 NQAWARLDRFLVTQCWLDKFCGI-VQCRLSRPTSDHFPIMLK 710
>gi|126336159|ref|XP_001368141.1| PREDICTED: hypothetical protein [Monodelphis domestica]
Length = 597
Score = 34.4 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 35/142 (24%), Gaps = 22/142 (15%)
Query: 2 LSQQGEWLKK--WADQKIKTGIPFVIAGDFNRKIN------------SIGDTDDFWQK-- 45
L Q L Q + G+P + GDFN + S D
Sbjct: 456 LIQMAVALTHLNHVTQDLYPGVPVLFCGDFNSTPSTGMYTFVSTGSVSEDHEDWASNGEE 515
Query: 46 ----MDPDGLLIRFP-QEKESTCNVIKRNKSSLDYFVIDRDNKNF-LIDNSFSIVSYDQS 99
M + + N + LDY ID + S
Sbjct: 516 ERCNMSLSHPFRLKSACGEPAYTNYVGGFHGCLDYIFIDFTALEVEQVIPMPSHEEVTTH 575
Query: 100 DLDTRRSKLSTHCPLTIEYDFE 121
S S H L + ++
Sbjct: 576 QALPSVSHPSDHIALICDLKWK 597
>gi|229818301|ref|ZP_04448582.1| hypothetical protein BIFANG_03601 [Bifidobacterium angulatum DSM
20098]
gi|229784171|gb|EEP20285.1| hypothetical protein BIFANG_03601 [Bifidobacterium angulatum DSM
20098]
Length = 354
Score = 34.4 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 22/107 (20%), Gaps = 15/107 (14%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ + V+ GD N I + +
Sbjct: 263 AEREPNGIGVVMGDLNSSIEHPSFRSLLANGLHDASRTQATHAVVTFPSWLTW------P 316
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ +D + S + S+ H LT E
Sbjct: 317 HIELDHVLFTNGLCPS-KVESFRIDGT--------DHYALTATLTLE 354
>gi|55168220|gb|AAV44086.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1237
Score = 34.4 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 31/116 (26%), Gaps = 15/116 (12%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNR--------KINSIGDTDDFWQKMDPDGLLIRFPQE 58
++L + + +P +I GDFN N + + L
Sbjct: 760 QFLTELVNMCSHETLPILIGGDFNILRSHDEKNNDNYDDRWPFLFNAIIDGLCLREIQMS 819
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ ++ L+ + + S + +S H PL
Sbjct: 820 GRNFTW------ANNLANPTYEKLDRVLMSTEWEQK-FPLSSVVALNRDISDHTPL 868
>gi|159028078|emb|CAO87155.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 260
Score = 34.4 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 11/121 (9%), Positives = 26/121 (21%), Gaps = 15/121 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW-----QKMDPDGLLIRFPQEKE 60
+ +++ Q T + GDFN + K+ + ++
Sbjct: 150 AKCIQERFCQLDLTKDYLFLTGDFNVNSQRLPRQILTQPLQSEIKLKDALADLELAEQMS 209
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ D+ + S H P+ +
Sbjct: 210 FNNYTDTPYLA----------IDTIYYDSRLQLDWVKVDPSRWLNLIPSDHYPVIAAFTL 259
Query: 121 E 121
Sbjct: 260 P 260
>gi|148653587|ref|YP_001280680.1| endonuclease/exonuclease/phosphatase [Psychrobacter sp. PRwf-1]
gi|148572671|gb|ABQ94730.1| Endonuclease/exonuclease/phosphatase [Psychrobacter sp. PRwf-1]
Length = 387
Score = 34.4 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 16/104 (15%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
++AGD N S +Q++ + ++Y
Sbjct: 238 ANDQTAILAGDLNDVAWSKT--TLMFQRISGLLDPRIGRFFINTFH---------VNYPF 286
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + F++V + L + S H P+ +E
Sbjct: 287 LRWALDHIFHSPCFTLV--NIERLPSIG---SDHFPVLTTLQYE 325
>gi|239995197|ref|ZP_04715721.1| putative orphan protein [Alteromonas macleodii ATCC 27126]
Length = 404
Score = 34.4 bits (77), Expect = 6.0, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 15/121 (12%)
Query: 17 IKTGIPFVIAGDFNRK----------INSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ FV+ GDFN I + + + P E +
Sbjct: 286 LSENARFVLVGDFNAADIGDKHREGVIEQLTEHPLVNNDIIPTSAGGAGASGAEFSNRFT 345
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDT---RRSKLSTHCPLTIEYDFEKG 123
+ DY + R F ++++ SDL R S H + I
Sbjct: 346 AYWGARADYVLPSR--FGFDVNDAGVFWPAKTSDLYRLVKDREASSDHRLVWISLSLTDD 403
Query: 124 N 124
N
Sbjct: 404 N 404
>gi|186532763|ref|NP_001119500.1| BST1 (BRISTLED 1); hydrolase/ inositol or phosphatidylinositol
phosphatase [Arabidopsis thaliana]
gi|332010618|gb|AED98001.1| inositol-1,4,5 triphosphate 5-phosphatase-like protein [Arabidopsis
thaliana]
Length = 466
Score = 34.4 bits (77), Expect = 6.0, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 34/126 (26%), Gaps = 22/126 (17%)
Query: 15 QKIKTGIPFVIAGDFN-----------RKINSIG-----DTDDFWQKMDPDGLLIRFPQE 58
++I + GD N + + D + + F +
Sbjct: 302 ERIIDHDRVLWLGDLNYRVALTYEETRVLLEDNDWDTLLERDQLNMERGAGRVFSGFQEG 361
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS------YDQSDLDTRRSKLSTHC 112
+ K +++S Y +K ++ +Q S+ S H
Sbjct: 362 QIFFAPTYKYSQNSDAYAGEMTKSKKKRRTPAWCDRILWKGEGIEQLSYIRGESRFSDHR 421
Query: 113 PLTIEY 118
P+ +
Sbjct: 422 PVCAIF 427
>gi|311693190|gb|ADP96063.1| exodeoxyribonuclease III Xth [marine bacterium HP15]
Length = 268
Score = 34.4 bits (77), Expect = 6.0, Method: Composition-based stats.
Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 4/89 (4%)
Query: 33 INSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFS 92
+ D + +M ++ ++ + S I L+
Sbjct: 181 PHERAWLDRLFDEMGCVDGFREINKQSNQFTWWPEQAEGSRKNAGI--RVDYQLLTPGIR 238
Query: 93 IVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ ++ H P+ ++YD E
Sbjct: 239 KTI--EDGWIDDSTRFCDHAPVIMDYDIE 265
>gi|320104403|ref|YP_004179994.1| endonuclease/exonuclease/phosphatase [Isosphaera pallida ATCC
43644]
gi|319751685|gb|ADV63445.1| Endonuclease/exonuclease/phosphatase [Isosphaera pallida ATCC
43644]
Length = 356
Score = 34.0 bits (76), Expect = 6.1, Method: Composition-based stats.
Identities = 18/124 (14%), Positives = 30/124 (24%), Gaps = 11/124 (8%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLIRFPQEK 59
L A + +I GDFN I + + +K
Sbjct: 229 ALALDAAAIRVAFPNHDVIIGGDFNVGITDRDKLANSWEVEAARRKGQAYDRTHALLTGL 288
Query: 60 ESTCNVIKRNKS-SLDYFVIDRDNKNFLIDNSFSIVSYDQSDL----DTRRSKLSTHCPL 114
C + Y K ++ + + R S S H P+
Sbjct: 289 IDGCRFRPLCEGVGETYVKGANRFKGAGAIDNLYVDGPHRDRFRPAKPARSSYGSDHLPV 348
Query: 115 TIEY 118
E+
Sbjct: 349 WTEF 352
>gi|225428456|ref|XP_002280534.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 1473
Score = 34.0 bits (76), Expect = 6.1, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 15/105 (14%)
Query: 21 IPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
P+ I GDFN ++ + + ++ D L+ P + RN
Sbjct: 679 DPWCIGGDFNVVLSQRERSSQGRISGAMRRFAQVVDDLELLDLPLQGGVFSWSGGRNNQ- 737
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ + S H P+ ++
Sbjct: 738 -----AWARLDRFLVTQCWPDNFCGI-VQCRLPRPTSDHFPIMLK 776
>gi|222631150|gb|EEE63282.1| hypothetical protein OsJ_18092 [Oryza sativa Japonica Group]
Length = 763
Score = 34.0 bits (76), Expect = 6.1, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 7/117 (5%)
Query: 4 QQGEWLKKW-ADQKIKTGI--PFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE-- 58
+ + LK W ++IK+ P+++ GDFN + + +
Sbjct: 405 RSQDRLKMWTLLRRIKSNAALPWLMIGDFNEAMWQSEHWSRVRRSERQMKDFREALADCD 464
Query: 59 --KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCP 113
V ++ R + + + + + Q+ + + S H P
Sbjct: 465 LHDLGFHGVPWTYDNNQRGANNVRVRLDRAVASPAWLGRFRQASITHLVTPSSDHVP 521
>gi|28198568|ref|NP_778882.1| hypothetical protein PD0660 [Xylella fastidiosa Temecula1]
gi|28056652|gb|AAO28531.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
gi|307579699|gb|ADN63668.1| endonuclease/exonuclease/phosphatase [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 246
Score = 34.0 bits (76), Expect = 6.1, Method: Composition-based stats.
Identities = 9/107 (8%), Positives = 30/107 (28%), Gaps = 21/107 (19%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ + ++ GDFN + + + + P R +
Sbjct: 153 FIADLLAEYPNTILMGDFNCRADCSEMQVLYRR-------TRLQPPGVVIPTFPSWRPER 205
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++D+ ++ + + + S H ++++
Sbjct: 206 AIDHILVSEG--------------FYICKTEAVPAAFSDHLAVSMDL 238
>gi|295134108|ref|YP_003584784.1| pyridoxal phosphate-dependent decarboxylase [Zunongwangia profunda
SM-A87]
gi|294982123|gb|ADF52588.1| pyridoxal phosphate-dependent decarboxylase [Zunongwangia profunda
SM-A87]
Length = 365
Score = 34.0 bits (76), Expect = 6.1, Method: Composition-based stats.
Identities = 10/108 (9%), Positives = 25/108 (23%), Gaps = 16/108 (14%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
++ GD N + L+ + +
Sbjct: 233 RDLSPEDRKVLVFGDLNDVA-----WSRTTKLFQQMSGLMDPRIGRGFFNTFHTGYRLFR 287
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
F + ++ +S S H P+ I+ +++
Sbjct: 288 WPLDHV-----------FHSKDFTLIEIAREKSIGSDHFPMYIKLNYD 324
>gi|213691505|ref|YP_002322091.1| Endonuclease/exonuclease/phosphatase [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|213522966|gb|ACJ51713.1| Endonuclease/exonuclease/phosphatase [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320457581|dbj|BAJ68202.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 370
Score = 34.0 bits (76), Expect = 6.1, Method: Composition-based stats.
Identities = 11/102 (10%), Positives = 23/102 (22%), Gaps = 13/102 (12%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ T ++ GDFN + D + + R +
Sbjct: 278 RRHTDTRYIFMGDFNATYDHTPFRDFLGDRFVDAARE---SGHGFTFSWPTNRATVPMFA 334
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + +V + S H L +
Sbjct: 335 GIDHVVLDQGMKAGQCKVVKVE----------GSDHAALLVT 366
>gi|163856676|ref|YP_001630974.1| hypothetical protein Bpet2363 [Bordetella petrii DSM 12804]
gi|163260404|emb|CAP42706.1| conserved hypothetical protein [Bordetella petrii]
Length = 266
Score = 34.0 bits (76), Expect = 6.1, Method: Composition-based stats.
Identities = 15/108 (13%), Positives = 22/108 (20%), Gaps = 15/108 (13%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
Q++ P ++ GDFN + R + T
Sbjct: 174 LVQRLGDDAPVLVGGDFNDWRRRA---SPLLAACRLHDVFRRALGREPRTFPARW----- 225
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
I + LS H PL E
Sbjct: 226 -------PLLALDRIYVRDVAAARPVPLASRVWRHLSDHAPLAAEVRL 266
>gi|21229767|ref|NP_635684.1| hypothetical protein XCC0289 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66766643|ref|YP_241405.1| hypothetical protein XC_0299 [Xanthomonas campestris pv. campestris
str. 8004]
gi|188989710|ref|YP_001901720.1| hypothetical protein xccb100_0314 [Xanthomonas campestris pv.
campestris str. B100]
gi|21111259|gb|AAM39608.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66571975|gb|AAY47385.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|167731470|emb|CAP49645.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris]
Length = 253
Score = 34.0 bits (76), Expect = 6.1, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 29/116 (25%), Gaps = 16/116 (13%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
QQ L + P V+AGDFN + +
Sbjct: 152 QQQIGLLCARVAA-LSADAPVVVAGDFNDW---RARGHPLLTRCGLVEAVECMH------ 201
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R S + N + + S L S+LS H PL
Sbjct: 202 ----GRVARSFPSRFPVLPLDRIYLRNLRVVQARVLSGLPW--SRLSDHLPLLASI 251
>gi|325124403|gb|ADY83926.1| hypothetical protein BDGL_003340 [Acinetobacter calcoaceticus
PHEA-2]
Length = 369
Score = 34.0 bits (76), Expect = 6.2, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 16/106 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ ++ GD N S +Q++ +
Sbjct: 231 DQIKDLDESCIVMGDLNDVAWSRTTR--LFQRISGLLDPRVGRHFINTFH---------A 279
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
DY ++ + + + S H P+ +
Sbjct: 280 DYPLLRWSLDHIFHS-----TDFGLVKMQRLPHVGSDHFPVYVVLQ 320
>gi|315502361|ref|YP_004081248.1| endonuclease/exonuclease/phosphatase [Micromonospora sp. L5]
gi|315408980|gb|ADU07097.1| Endonuclease/exonuclease/phosphatase [Micromonospora sp. L5]
Length = 327
Score = 34.0 bits (76), Expect = 6.2, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 24/117 (20%), Gaps = 18/117 (15%)
Query: 12 WADQKI-----KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
W DQ+ G V+AGDFN ++ D
Sbjct: 224 WTDQRAQPPATPDGGLSVLAGDFNATLDHAALRDLIATGYTDAADAAGAGFGGTWGPY-- 281
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
ID+ T S H L E G
Sbjct: 282 -----------DGDPIPPVTIDHVLVDRRIAVRAARTYPVPGSDHRALLAELRLPAG 327
>gi|303276761|ref|XP_003057674.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460331|gb|EEH57625.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 430
Score = 34.0 bits (76), Expect = 6.2, Method: Composition-based stats.
Identities = 13/118 (11%), Positives = 27/118 (22%), Gaps = 17/118 (14%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFW------QKMDPDGLLIRFPQEKESTCNV------ 65
V GD N ++N D + L+ ++
Sbjct: 286 ADAHAAVWLGDLNYRLNLPDDRVRAAIASGNCASLLGSDQLLLERAAGKAFVGWIEAPVT 345
Query: 66 -----IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
R ++ + + + Q+ S H P+ E+
Sbjct: 346 FPPTYKYRPGTNTAKEEKKKRTPAWCDRILWRGRDIRQNSYARAELTQSDHKPVLAEF 403
>gi|332322090|emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 34.0 bits (76), Expect = 6.2, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 6/104 (5%)
Query: 20 GIPFVIAGDFNRKINSIGD---TDDFWQKMDPDGLLIRFPQ--EKESTCNVIKRNKSSLD 74
P ++ GD+N ++ D + + Q E +T N S+
Sbjct: 132 HEPCILIGDYNAVYSAQDRLNGNDVSEAETSDLRSFVLKAQLLEAPTTGLFYSWNNKSIG 191
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
I ++ ++ Y ++ R + +S H PL
Sbjct: 192 ADRISSRIDKSFVNVAWIN-QYPDVVVEYREAGISDHSPLIFNL 234
>gi|332023175|gb|EGI63431.1| Synaptojanin-1 [Acromyrmex echinatior]
Length = 1157
Score = 34.0 bits (76), Expect = 6.2, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 31/139 (22%), Gaps = 30/139 (21%)
Query: 13 ADQKIKTGIPFVIAGDFNRKIN---------------SIGDTDDFWQKMDPDGLLIRFPQ 57
+ + T GDFN +++ D + G + + Q
Sbjct: 713 MGRTLNTHDYVFWCGDFNYRVDMDKDEMKELIKQSELDQILQYDQLRVQQEQGNVFKNFQ 772
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS---------------DLD 102
E T + D + + + Q
Sbjct: 773 EGPITFAPTYKYDLFSDDYDTSEKCRQPAWTDRVLWKRRKQIPDIDSPTDWNSGKLVYYG 832
Query: 103 TRRSKLSTHCPLTIEYDFE 121
K S H P+ D +
Sbjct: 833 KAELKQSDHRPVIATIDID 851
>gi|325528512|gb|EGD05629.1| endonuclease/exonuclease/phosphatase [Burkholderia sp. TJI49]
Length = 98
Score = 34.0 bits (76), Expect = 6.2, Method: Composition-based stats.
Identities = 16/114 (14%), Positives = 28/114 (24%), Gaps = 18/114 (15%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
W+ W + P V+AGDFN N + ++ + Q +
Sbjct: 1 WIAHWIV-RNAGDGPLVLAGDFNDWRNDSV---ALFGEIGLSEVATLLGQSGRTFPAFS- 55
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + R + LS H P +
Sbjct: 56 --PALALDKMFVRGLTPLEWHAPSGET-----------AWLSDHLPYIARLRLD 96
>gi|312963202|ref|ZP_07777686.1| endonuclease/exonuclease/phosphatase [Pseudomonas fluorescens WH6]
gi|311282468|gb|EFQ61065.1| endonuclease/exonuclease/phosphatase [Pseudomonas fluorescens WH6]
Length = 362
Score = 34.0 bits (76), Expect = 6.2, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 33/134 (24%), Gaps = 15/134 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKI---------NSIGDTDDFWQKMDPDGLLI 53
+Q + K D+ G P++I GDFN G +
Sbjct: 230 QEQVKTTVKLLDKFEGRGTPWLIGGDFNLLPLGQFLRLDAGKRGQYSPDSELHLLWDKYP 289
Query: 54 RFPQEKESTC----NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
P +S+ + + DR V ++S
Sbjct: 290 MIPSNSQSSGIDREQWLTHFPNDPGLDGPDRTLDYLFYSPRIKRVEAKV--RQEDTLRIS 347
Query: 110 THCPLTIEYDFEKG 123
H P+ +
Sbjct: 348 NHLPVIARFLLPAA 361
>gi|299771689|ref|YP_003733715.1| endonuclease/exonuclease/phosphatase [Acinetobacter sp. DR1]
gi|298701777|gb|ADI92342.1| endonuclease/exonuclease/phosphatase [Acinetobacter sp. DR1]
Length = 369
Score = 34.0 bits (76), Expect = 6.2, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 16/106 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ ++ GD N S +Q++ +
Sbjct: 231 DQIKDLDESCIVMGDLNDVAWSRTTR--LFQRISGLLDPRVGRHFINTFH---------A 279
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
DY ++ + + + S H P+ +
Sbjct: 280 DYPLLRWSLDHIFHS-----TDFGLVKMQRLPHIGSDHFPVYVVLQ 320
>gi|331239161|ref|XP_003332234.1| hypothetical protein PGTG_14530 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309311224|gb|EFP87815.1| hypothetical protein PGTG_14530 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 307
Score = 34.0 bits (76), Expect = 6.3, Method: Composition-based stats.
Identities = 12/115 (10%), Positives = 23/115 (20%), Gaps = 12/115 (10%)
Query: 18 KTGIPFVIAGDFNRKINSIGDT-------DDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ G P ++ GD N D + Q
Sbjct: 192 EKGKPVLLIGDLNLVREQSAYQVLTGKATDQPAHRASDRFFQDCGEQVGRPFGAHNATFT 251
Query: 71 SSLDYFVIDRDNKNFLI----DNSFSIVSYD-QSDLDTRRSKLSTHCPLTIEYDF 120
+ N + + Y + S +S H ++
Sbjct: 252 GFQHDPEDLMKIDYIMTMSSPPNLWQTLKYGVIPNQFQNESIVSDHRMVSAVIQM 306
>gi|261340919|ref|ZP_05968777.1| endonuclease/exonuclease/phosphatase family protein [Enterobacter
cancerogenus ATCC 35316]
gi|288316776|gb|EFC55714.1| endonuclease/exonuclease/phosphatase family protein [Enterobacter
cancerogenus ATCC 35316]
Length = 259
Score = 34.0 bits (76), Expect = 6.3, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN +M+ R +E + +R K+
Sbjct: 169 DQIAHHSGPIIMAGDFNA---------WSRPRMNALYRFAREMSLREVRFSDDQRKKAFG 219
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D ++ S H PL +E+
Sbjct: 220 RPL------------DFVFYRGLSVHDASVLVTRASDHNPLLVEFS 253
>gi|169634472|ref|YP_001708208.1| hypothetical protein ABSDF3084 [Acinetobacter baumannii SDF]
gi|169153264|emb|CAP02367.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter baumannii]
Length = 373
Score = 34.0 bits (76), Expect = 6.3, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 16/106 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ ++ GD N S +Q++ +
Sbjct: 231 DQIKDLDESCIVMGDLNDVAWSRTTR--LFQRISGLLDPRVGRHFINTFH---------A 279
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
DY ++ + + + S H P+ +
Sbjct: 280 DYPLLRWSLDHIFHS-----TDFGLVKMQRLSHIGSDHFPVYVVLQ 320
>gi|325578028|ref|ZP_08148222.1| endonuclease/exonuclease/phosphatase [Haemophilus parainfluenzae
ATCC 33392]
gi|325160261|gb|EGC72389.1| endonuclease/exonuclease/phosphatase [Haemophilus parainfluenzae
ATCC 33392]
Length = 263
Score = 34.0 bits (76), Expect = 6.4, Method: Composition-based stats.
Identities = 12/111 (10%), Positives = 38/111 (34%), Gaps = 4/111 (3%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI-KRN 69
++ ++ ++ ++ GDFN S + ++ GL F K+ + ++
Sbjct: 156 RYIVERSQSANLKILMGDFNTDAISDQ---QAYHQIKSLGLFDTFEMAKQKDSGISVEKA 212
Query: 70 KSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
++ ++ + ++S + +S H + +
Sbjct: 213 IDGWKGHSEEKRLDYIFLNQAKRVLSSQVIFNGKNKPIVSDHFGVEVALIL 263
>gi|222152427|ref|YP_002561602.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
uberis 0140J]
gi|222113238|emb|CAR40741.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
uberis 0140J]
Length = 273
Score = 34.0 bits (76), Expect = 6.4, Method: Composition-based stats.
Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 2/108 (1%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ GIP +I GDFN + G + + V D
Sbjct: 168 ELNALGIPLMIMGDFNNPTDLEGYQLIEASPLGLRDSHKVADKVFGDYSIVA-DIDGWKD 226
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ F I+ + + +S H L + ++
Sbjct: 227 NK-ESYKVDHAFASKEFDILRSEITFEGGSAPVISDHFGLEVTTKWKS 273
>gi|198424184|ref|XP_002124912.1| PREDICTED: similar to Deoxyribonuclease-1 precursor
(Deoxyribonuclease I) (DNase I) (Dornase alfa) [Ciona
intestinalis]
Length = 271
Score = 34.0 bits (76), Expect = 6.4, Method: Composition-based stats.
Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 1/95 (1%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVID 79
G +IAGDFN + + + M D + V + + V
Sbjct: 173 GEDALIAGDFNADCSYVCSSCWQTIDMWTDPRFTWLI-GSDVDTTVSSTDCAYDRIVVAG 231
Query: 80 RDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPL 114
+ S + +S H P+
Sbjct: 232 KAMTENSGMGSVFRFDLAYNLSYEETKDVSDHYPV 266
>gi|147779794|emb|CAN62294.1| hypothetical protein VITISV_019972 [Vitis vinifera]
Length = 1851
Score = 34.0 bits (76), Expect = 6.4, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 17/107 (15%)
Query: 20 GIPFVIAGDFNRKINSI---------GDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
P+ + GDFN + F +D GL+ Q
Sbjct: 874 DEPWCLGGDFNSTLYQRERSHQGRITPIMRRFAHIIDDLGLVDLPLQG-GVFTW------ 926
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
S FL+ S+ + +S H P+ +E
Sbjct: 927 SGGLNNQSWARLDRFLVSPSWLDK-FSGMIQRRLPRPVSDHFPILLE 972
>gi|184156758|ref|YP_001845097.1| hypothetical protein ACICU_00438 [Acinetobacter baumannii ACICU]
gi|260556208|ref|ZP_05828427.1| endonuclease/Exonuclease/phosphatase [Acinetobacter baumannii ATCC
19606]
gi|332873170|ref|ZP_08441127.1| endonuclease/exonuclease/phosphatase family protein [Acinetobacter
baumannii 6014059]
gi|183208352|gb|ACC55750.1| uncharacterized protein conserved in bacteria [Acinetobacter
baumannii ACICU]
gi|193076249|gb|ABO10883.2| putative membrane protein [Acinetobacter baumannii ATCC 17978]
gi|260410263|gb|EEX03562.1| endonuclease/Exonuclease/phosphatase [Acinetobacter baumannii ATCC
19606]
gi|322506650|gb|ADX02104.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
gi|323516525|gb|ADX90906.1| hypothetical protein ABTW07_0469 [Acinetobacter baumannii
TCDC-AB0715]
gi|332738682|gb|EGJ69552.1| endonuclease/exonuclease/phosphatase family protein [Acinetobacter
baumannii 6014059]
Length = 373
Score = 34.0 bits (76), Expect = 6.4, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 16/106 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ ++ GD N S +Q++ +
Sbjct: 231 DQIKDLDESCIVMGDLNDVAWSRTTR--LFQRISGLLDPRVGRHFINTFH---------A 279
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
DY ++ + + + S H P+ +
Sbjct: 280 DYPLLRWSLDHIFHS-----TDFGLVKMQRLSHIGSDHFPVYVVLQ 320
>gi|169797320|ref|YP_001715113.1| hypothetical protein ABAYE3347 [Acinetobacter baumannii AYE]
gi|215484757|ref|YP_002326992.1| Endonuclease/Exonuclease/phosphatase family protein [Acinetobacter
baumannii AB307-0294]
gi|239500840|ref|ZP_04660150.1| Endonuclease/Exonuclease/phosphatase family protein [Acinetobacter
baumannii AB900]
gi|301346423|ref|ZP_07227164.1| Endonuclease/Exonuclease/phosphatase family protein [Acinetobacter
baumannii AB056]
gi|301511749|ref|ZP_07236986.1| Endonuclease/Exonuclease/phosphatase family protein [Acinetobacter
baumannii AB058]
gi|301594292|ref|ZP_07239300.1| Endonuclease/Exonuclease/phosphatase family protein [Acinetobacter
baumannii AB059]
gi|332852981|ref|ZP_08434491.1| endonuclease/exonuclease/phosphatase family protein [Acinetobacter
baumannii 6013150]
gi|332866415|ref|ZP_08436999.1| endonuclease/exonuclease/phosphatase family protein [Acinetobacter
baumannii 6013113]
gi|169150247|emb|CAM88143.1| conserved hypothetical protein; putative membrane protein
[Acinetobacter baumannii AYE]
gi|213986519|gb|ACJ56818.1| Endonuclease/Exonuclease/phosphatase family protein [Acinetobacter
baumannii AB307-0294]
gi|332728917|gb|EGJ60272.1| endonuclease/exonuclease/phosphatase family protein [Acinetobacter
baumannii 6013150]
gi|332734641|gb|EGJ65747.1| endonuclease/exonuclease/phosphatase family protein [Acinetobacter
baumannii 6013113]
Length = 373
Score = 34.0 bits (76), Expect = 6.4, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 16/106 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ ++ GD N S +Q++ +
Sbjct: 231 DQIKDLDESCIVMGDLNDVAWSRTTR--LFQRISGLLDPRVGRHFINTFH---------A 279
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
DY ++ + + + S H P+ +
Sbjct: 280 DYPLLRWSLDHIFHS-----TDFGLVKMQRLSHIGSDHFPVYVVLQ 320
>gi|21673785|ref|NP_661850.1| hypothetical protein CT0957 [Chlorobium tepidum TLS]
gi|21646913|gb|AAM72192.1| hypothetical protein CT0957 [Chlorobium tepidum TLS]
Length = 344
Score = 34.0 bits (76), Expect = 6.4, Method: Composition-based stats.
Identities = 17/129 (13%), Positives = 29/129 (22%), Gaps = 26/129 (20%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
++ GDFN + + D + C + S Y
Sbjct: 216 NPQSEIIVMGDFNDQPENHSVKDVLGSSF-DRKAVRHASSRLLYNCWNEASSPGSYFYRN 274
Query: 78 IDRDNKNFLID--------NSFSIVSYDQ---------------SDLDTRRSKL--STHC 112
L+ S S+ S + K S H
Sbjct: 275 HWEQIDQMLVSAALLDEKGLSIDKTSFRVFSIPAMFDRFGKGLYSTYKQGKFKGGYSDHL 334
Query: 113 PLTIEYDFE 121
PL ++ +
Sbjct: 335 PLLLKVRIK 343
>gi|262375030|ref|ZP_06068264.1| endonuclease/Exonuclease/phosphatase [Acinetobacter lwoffii SH145]
gi|262310043|gb|EEY91172.1| endonuclease/Exonuclease/phosphatase [Acinetobacter lwoffii SH145]
Length = 376
Score = 34.0 bits (76), Expect = 6.5, Method: Composition-based stats.
Identities = 14/106 (13%), Positives = 27/106 (25%), Gaps = 16/106 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ ++ GD N S +Q++ +
Sbjct: 232 DQIKDLDESCIVMGDLNDVAWSRTTR--LFQRISGLLDPRVGRHYVNTFH---------A 280
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
DY + F++V ++ S H P+ +
Sbjct: 281 DYPFFRWSLDHVFHSTDFALVH-----MERLPHVGSDHFPVFLVLQ 321
>gi|71066077|ref|YP_264804.1| hypothetical protein Psyc_1522 [Psychrobacter arcticus 273-4]
gi|71039062|gb|AAZ19370.1| conserved hypothetical protein [Psychrobacter arcticus 273-4]
Length = 372
Score = 34.0 bits (76), Expect = 6.5, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 18/105 (17%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFW-QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
++AGD N S + + F N ++Y
Sbjct: 241 DNKQTAILAGDLNDVAWSQTTRRFQRISGLLDPRIGRHFI------------NTFHVNYP 288
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + D++ S S H P+ +E
Sbjct: 289 FLRWALDHLFHSAC-----FTVIDIERLPSIGSDHFPVMTTLQYE 328
>gi|21218691|ref|NP_624470.1| secreted protein [Streptomyces coelicolor A3(2)]
gi|5708245|emb|CAB52358.1| putative secreted protein [Streptomyces coelicolor A3(2)]
Length = 279
Score = 34.0 bits (76), Expect = 6.5, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 27/113 (23%), Gaps = 16/113 (14%)
Query: 5 QGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L++ A I T P ++ GDFN + D + + +
Sbjct: 176 QADRLQQTAQVVDLIGTRKPGILVGDFNALPAAPESRPLQNAYTDAWAKSLHARGDGATY 235
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + D S H PL
Sbjct: 236 P-----------AQSPTERIDLIYATRRVTPLVAQVLKDDPA---ASDHRPLL 274
>gi|260774417|ref|ZP_05883331.1| extracellular nuclease-related protein [Vibrio metschnikovii CIP
69.14]
gi|260610544|gb|EEX35749.1| extracellular nuclease-related protein [Vibrio metschnikovii CIP
69.14]
Length = 837
Score = 34.0 bits (76), Expect = 6.5, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 15/131 (11%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
L QQ + + K +I G + F + +++ S
Sbjct: 660 LRQQAS--QAIIEAMSKKTDHQLILGSLHAYPKEKAAL-VFSPTELNSYVDAVAIRDRNS 716
Query: 62 TCNVIKRNK--SSLDYFVIDRDNKNFLIDNSFSIVSYDQSD----------LDTRRSKLS 109
I+RN +DY + ++ +D++ ++ QS +T + S
Sbjct: 717 ERYSIERNAESGRVDYIFMSTSLRDKFVDSAPWSINSAQSALLNYQSGMTFDETNWYRSS 776
Query: 110 THCPLTIEYDF 120
+H P+ + +
Sbjct: 777 SHDPILLTLNL 787
>gi|168180262|ref|ZP_02614926.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum NCTC 2916]
gi|182668813|gb|EDT80791.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum NCTC 2916]
Length = 263
Score = 34.0 bits (76), Expect = 6.5, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Query: 13 ADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
Q++K ++ GD+N +N+ G +K+ L R + I K
Sbjct: 158 LVQELKEKETCILMGDYNNDAFLNNKGYDYLINKKLKDIYHLARSKDNGVTAIGDIDGWK 217
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ L + + + R+ +S H + + +
Sbjct: 218 GNTKN----MRLDLILSNKNLKVEYCKVIFNGIRKEIISDHFGVEAKIE 262
>gi|146320230|ref|YP_001199941.1| metal-dependent hydrolase [Streptococcus suis 98HAH33]
gi|145691036|gb|ABP91541.1| Metal-dependent hydrolase [Streptococcus suis 98HAH33]
Length = 286
Score = 34.0 bits (76), Expect = 6.5, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 34/107 (31%), Gaps = 2/107 (1%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
++ ++ GDFN S + + ++ ++ + V K
Sbjct: 181 IVERTGNRRFKILMGDFNTDAFSDREAYEAITELGLYDSYNLAMEKDQGIT-VEKAIDGW 239
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++ ++ ++S R +S H + +E +
Sbjct: 240 AGHS-QEKRLDYIFLNQKKEVLSSLVIFNGENRPIISDHFGVEVEIN 285
>gi|119026409|ref|YP_910254.1| hypothetical protein BAD_1391 [Bifidobacterium adolescentis ATCC
15703]
gi|118765993|dbj|BAF40172.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703]
Length = 397
Score = 34.0 bits (76), Expect = 6.5, Method: Composition-based stats.
Identities = 15/107 (14%), Positives = 24/107 (22%), Gaps = 17/107 (15%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
Q +V+ GDFN + + G
Sbjct: 306 LAQLQHYDSLYVLMGDFNSTWDHASFRYLLGSRFLDSGE-----------------QAGE 348
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ID+ DL+T+ S H L +
Sbjct: 349 GLHMTYPAMLPVAEIDHIVHDKGVVVGDLETKHIPGSDHRALLATLE 395
>gi|270293603|ref|ZP_06199805.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270275070|gb|EFA20930.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 352
Score = 34.0 bits (76), Expect = 6.6, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 31/150 (20%), Gaps = 35/150 (23%)
Query: 6 GEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ------ 57
+K D I+ V+ GDFN + + PQ
Sbjct: 201 ARKVKHAIDSLYTIRRHPQIVLLGDFNDYPENKSVKEVLEAAAPSTLQDSLRPQKLYHLL 260
Query: 58 ------EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--------SDLDT 103
K + LD+ ++ D D
Sbjct: 261 AGKAKTRKHFGSYKYQGEWGLLDHIIVSGTLLQEHAPLYTEEAKADVFCLPFLLTRDKKY 320
Query: 104 RRSKL-------------STHCPLTIEYDF 120
+ S H P+ E+
Sbjct: 321 GGQQPFHTYYGMKYQGGYSDHLPVYAEFRL 350
>gi|224540445|ref|ZP_03680984.1| hypothetical protein BACCELL_05358 [Bacteroides cellulosilyticus
DSM 14838]
gi|224517959|gb|EEF87064.1| hypothetical protein BACCELL_05358 [Bacteroides cellulosilyticus
DSM 14838]
Length = 364
Score = 34.0 bits (76), Expect = 6.6, Method: Composition-based stats.
Identities = 21/150 (14%), Positives = 34/150 (22%), Gaps = 35/150 (23%)
Query: 6 GEWLKKWADQK--IKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ------ 57
E LK D + +I GDFN ++ + P PQ
Sbjct: 213 AEQLKAAVDSICSYRYHPQILIMGDFNDYPDNASVNKILSAEAPPQNGDSLQPQKLYHLL 272
Query: 58 ------EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ--------SDLDT 103
K + LD+ ++ D D D
Sbjct: 273 ARKSAIRKHFGSYKYQGEWGLLDHIIVSGTLLQPDADFCTGEDKADVFHSSFLLTEDKKY 332
Query: 104 RRSKL-------------STHCPLTIEYDF 120
+ S H P+ ++
Sbjct: 333 GGVQPFRTYYGMKYQGGYSDHLPVWADFRL 362
>gi|157375456|ref|YP_001474056.1| endonuclease/exonuclease/phosphatase [Shewanella sediminis HAW-EB3]
gi|157317830|gb|ABV36928.1| endonuclease/exonuclease/phosphatase [Shewanella sediminis HAW-EB3]
Length = 284
Score = 34.0 bits (76), Expect = 6.6, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 28/120 (23%), Gaps = 26/120 (21%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q E L + P ++AGDFN N L + +
Sbjct: 190 EQFEALS---LELGGHSGPIILAGDFNTWRNDR---------------LKLIYEFAKRFG 231
Query: 64 NVIKRNKSSLDYFVIDRDNKN-FLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ F F +D S H P+ + +
Sbjct: 232 LSEAEYHLDERQRFFGLALDHLFYRGLDFHHAESKVTD-------ASDHNPIIAHFTLKS 284
>gi|119192450|ref|XP_001246831.1| hypothetical protein CIMG_00602 [Coccidioides immitis RS]
gi|121932279|sp|Q1EA11|CCR4_COCIM RecName: Full=Glucose-repressible alcohol dehydrogenase
transcriptional effector; AltName: Full=Carbon
catabolite repressor protein 4; AltName:
Full=Cytoplasmic deadenylase
Length = 687
Score = 34.0 bits (76), Expect = 6.6, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 30/128 (23%), Gaps = 23/128 (17%)
Query: 18 KTGIPFVIAGDFNRKINSIGDT------------DDFWQKMDPDGLLIRFPQEKESTCNV 65
+ IP ++ GDFN S D + + +
Sbjct: 542 ASQIPILVCGDFNSCPGSAVYNLLAHGRMAEEHPDLEQRLYGNLSRMGMSHPFTLKSAYS 601
Query: 66 IKRNKSSLDY-FVIDRDNKNFLIDNSFSIVSY---DQSDLDTRR-------SKLSTHCPL 114
S +Y ++ V+ + +R S H L
Sbjct: 602 TIGELSFTNYTPGFTDVIDYIWYSSNTLQVTALLGEVDKEYLKRVPGFPNYHFPSDHLAL 661
Query: 115 TIEYDFEK 122
E+ +
Sbjct: 662 MAEFSVKS 669
>gi|49116840|gb|AAH73585.1| LOC443670 protein [Xenopus laevis]
Length = 559
Score = 34.0 bits (76), Expect = 6.6, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 36/141 (25%), Gaps = 22/141 (15%)
Query: 2 LSQQGEWLKK--WADQKIKTGIPFVIAGDFNRKINS------------IGDTDDFWQKMD 47
L Q L ++ GIP V GDFN ++ D D +
Sbjct: 418 LLQVAVALAHLGHVANELYGGIPVVFCGDFNSLPDTGLHRFIKGGAVGEDDEDWTSNGEE 477
Query: 48 PDGLLIRFPQ-------EKESTCNVIKRNKSSLDYFVIDR-DNKNFLIDNSFSIVSYDQS 99
+ + + N I LDY ID I + +
Sbjct: 478 EQCNMALTHPFKLTSACGEPAYTNYIGEFHGCLDYIFIDSARLAVERIIPLPTHQEVTKY 537
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
S H L + +
Sbjct: 538 RALPSIEHPSDHMALVCDLKW 558
>gi|229592767|ref|YP_002874886.1| hypothetical protein PFLU5388 [Pseudomonas fluorescens SBW25]
gi|229364633|emb|CAY52546.1| putative exported protein [Pseudomonas fluorescens SBW25]
Length = 362
Score = 34.0 bits (76), Expect = 6.6, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 33/134 (24%), Gaps = 15/134 (11%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKI---------NSIGDTDDFWQKMDPDGLLI 53
+Q + K D+ G P++I GDFN G +
Sbjct: 230 QEQVKTTVKLLDKFEGRGTPWLIGGDFNLLPLGQFLRLDAGKRGQYSPDSELHLLWDKYP 289
Query: 54 RFPQEKESTC----NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
P +S+ + + DR V ++S
Sbjct: 290 MIPSNSQSSGIDREKWLTHFPNDPSVDGPDRTLDYLFYSPRIKRVEAKV--RQEDTLRIS 347
Query: 110 THCPLTIEYDFEKG 123
H P+ +
Sbjct: 348 NHLPVIARFLLPAA 361
>gi|193785979|dbj|BAG54766.1| unnamed protein product [Homo sapiens]
Length = 288
Score = 34.0 bits (76), Expect = 6.6, Method: Composition-based stats.
Identities = 12/92 (13%), Positives = 32/92 (34%)
Query: 15 QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ F+ GDFN + + ++ D + ++E T N +
Sbjct: 176 KHRWKAENFIFMGDFNAGCSYVPKKAWKNVRLRTDPRFVWLIGDQEDTTVKKSTNCAYDR 235
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS 106
+ ++ + ++ S S+ + ++ T
Sbjct: 236 IVLRGQEIVSSVVPKSNSVFDFQKAYKLTEEE 267
>gi|149369492|ref|ZP_01889344.1| hypothetical protein SCB49_06692 [unidentified eubacterium SCB49]
gi|149356919|gb|EDM45474.1| hypothetical protein SCB49_06692 [unidentified eubacterium SCB49]
Length = 366
Score = 34.0 bits (76), Expect = 6.6, Method: Composition-based stats.
Identities = 15/140 (10%), Positives = 32/140 (22%), Gaps = 29/140 (20%)
Query: 6 GEWLKKWADQKIKTGIP---FVIAGDFNRKINSIGDTDDF-WQKMDPDGLLIRFPQEKES 61
L + + + P + GDFN ++ +K + ES
Sbjct: 220 AAALNRHIVDSLFSQDPYAKVITMGDFNDDPSNESIKKYLGAKKEKEGIQIKELYNPMES 279
Query: 62 TCNVIKRNKSSLDYFVIDRDNK------------NFLIDNSFSIVSYDQSDLDTRRSKL- 108
+ D++ + L +Y + +
Sbjct: 280 MHKKGIGTLAYRDHWNLFDQMIISTELTKDDYSSYRLYKAGIFNKNYLVNPRGRYKDYPF 339
Query: 109 ------------STHCPLTI 116
S H P+ +
Sbjct: 340 RSFTGGSFTGGYSDHFPVYL 359
>gi|161615581|ref|YP_001589546.1| hypothetical protein SPAB_03356 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161364945|gb|ABX68713.1| hypothetical protein SPAB_03356 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 219
Score = 34.0 bits (76), Expect = 6.7, Method: Composition-based stats.
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN S + ++ L + +R ++
Sbjct: 129 DQIAHHSGPVIMAGDFNAW--SRPRMNALYRFAREMSLRQVRFTD-------DQRRRAFG 179
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + S + + S H PL +E+
Sbjct: 180 RPLDFVFYRGLNVNEASVLVT------------RASDHNPLLVEFS 213
>gi|54301988|ref|YP_131981.1| hypothetical protein PBPRB0308 [Photobacterium profundum SS9]
gi|46915409|emb|CAG22181.1| conserved hypothetical protein [Photobacterium profundum SS9]
Length = 314
Score = 34.0 bits (76), Expect = 6.7, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 28/122 (22%), Gaps = 20/122 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L ++ + D + ++ GDFN S F +
Sbjct: 213 LLMTLNNLVEDYLDTDSASPAQLIV-GDFNLSSTSKRYQTLFSG-----------FNSQP 260
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ Y I D+ + S H P+
Sbjct: 261 VSSWPNWS--GLRQYLTIAIDHLWAHYPLEICKRKALINIA------GSDHRPIVTYLTM 312
Query: 121 EK 122
+K
Sbjct: 313 QK 314
>gi|86138482|ref|ZP_01057056.1| hypothetical protein MED193_05241 [Roseobacter sp. MED193]
gi|85825007|gb|EAQ45208.1| hypothetical protein MED193_05241 [Roseobacter sp. MED193]
Length = 262
Score = 34.0 bits (76), Expect = 6.7, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 16/104 (15%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
A V+ GD N + + G L+ + +
Sbjct: 129 AKTLDPQAQSVVLVGDLNDVP-----WSQTIKLLQKLGGLLDPRVGRGFFSSFH------ 177
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
D+ ++ + F++VS++ S H P+
Sbjct: 178 ADFPLLRWPLDQVFCTSDFTLVSFE-----RLGHVGSDHFPIQA 216
>gi|109896865|ref|YP_660120.1| endonuclease/exonuclease/phosphatase [Pseudoalteromonas atlantica
T6c]
gi|109699146|gb|ABG39066.1| Endonuclease/exonuclease/phosphatase [Pseudoalteromonas atlantica
T6c]
Length = 391
Score = 34.0 bits (76), Expect = 6.7, Method: Composition-based stats.
Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 16/118 (13%)
Query: 19 TGIPFVIAGDFNRKINSIGDT-------------DDFWQKMDPDGLLIRFPQEKESTCNV 65
FV+ GD N + M G + ++
Sbjct: 276 RSEHFVVLGDLNASAEEGDGHKDGIGSLLKNSKVNSHNIPMSAGGAVHSPENALGASHTA 335
Query: 66 IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS-THCPLTIEYDFEK 122
R ++ DY + + F S + S + + S H + ++ D +
Sbjct: 336 FWRMRA--DYVLPSKKLGEVSTSGVFWPTSDEASYRLIQNRQASSDHRLVWVDVDVTE 391
>gi|239979144|ref|ZP_04701668.1| hypothetical protein SalbJ_06897 [Streptomyces albus J1074]
gi|291451021|ref|ZP_06590411.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291353970|gb|EFE80872.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 341
Score = 34.0 bits (76), Expect = 6.8, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 26/116 (22%), Gaps = 21/116 (18%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
E L + + V+ GD N +N + Q G
Sbjct: 246 SAEALG--LAIRGEELDRVVLLGDLNGTMNDRALSPVTSQMRSTQG----AAGNGFGFSW 299
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +D + + S + S H P+ F
Sbjct: 300 PASFPMARIDQIM-----VQGVEPVSSWTLPR----------TASDHLPIAARISF 340
>gi|158340881|ref|YP_001522049.1| hypothetical protein AM1_D0244 [Acaryochloris marina MBIC11017]
gi|158311122|gb|ABW32735.1| endonuclease/exonuclease/phosphatase [Acaryochloris marina
MBIC11017]
Length = 258
Score = 34.0 bits (76), Expect = 6.8, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 18/117 (15%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES 61
Q + L+ Q P +++GDFN +++ K+ + ++
Sbjct: 157 FQSQLQQLEA---QLTIHPGPIILSGDFNT-------WNEYRMKVLQTMVRRLDLRQVTF 206
Query: 62 TCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ K K DY + + + S H PL +E
Sbjct: 207 SSAHYKNLKQFFDY-----PLDHIFYRGFTQCLGSEIV---LGELSSSDHSPLVVEL 255
>gi|77554994|gb|ABA97790.1| retrotransposon protein, putative, LINE subclass [Oryza sativa
Japonica Group]
Length = 636
Score = 34.0 bits (76), Expect = 6.8, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 7/112 (6%)
Query: 12 WADQ-KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV---IK 67
W +I ++ GDFN + + M+ + +
Sbjct: 295 WLKNIQIDAHQNWLFLGDFNFYRS--IYRNKVGADMNDIFIFNEIISTLGLLEIPLKGRR 352
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
S++ + S+ +++ + + +S H P ++ D
Sbjct: 353 FTWSNMQQNPLLERLDWAFTSASW-TLTFPNTTVLPLTRNISDHVPCVVKID 403
>gi|307718261|ref|YP_003873793.1| endonuclease/exonuclease/phosphatase family protein [Spirochaeta
thermophila DSM 6192]
gi|306531986|gb|ADN01520.1| endonuclease/exonuclease/phosphatase family protein [Spirochaeta
thermophila DSM 6192]
Length = 311
Score = 34.0 bits (76), Expect = 6.8, Method: Composition-based stats.
Identities = 14/131 (10%), Positives = 39/131 (29%), Gaps = 15/131 (11%)
Query: 1 MLSQQGEWLKKWADQ--KIKTGIPFVIAGDFNRKINSIG--DTDDFWQKMDPDGLLIRFP 56
+ Q + + ++ + G+ ++ GDFN + +++ + + + P
Sbjct: 172 IRRNQLFLIARRLEEIRRTAPGVHVLVGGDFNMEADAVETFFDRALFPQDVHSVWSMMVP 231
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------- 108
+ +D F ++ + + L R +
Sbjct: 232 GTMPPGSYWYEGRWERIDGFFFTEGLRDGVGLDVTGGEVVAFPWLLDERGRPWSWDMGTG 291
Query: 109 ---STHCPLTI 116
S H P+ +
Sbjct: 292 SGYSDHLPVKV 302
>gi|154251594|ref|YP_001412418.1| endonuclease/exonuclease/phosphatase [Parvibaculum lavamentivorans
DS-1]
gi|154155544|gb|ABS62761.1| Endonuclease/exonuclease/phosphatase [Parvibaculum lavamentivorans
DS-1]
Length = 231
Score = 34.0 bits (76), Expect = 6.8, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 29/118 (24%), Gaps = 24/118 (20%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q L A ++ +P ++ GDFN + + + FP
Sbjct: 136 RLQSSMLVDLAREEK---LPCIMMGDFNDWFSFGWVRRRLRAVLPSRTMEQTFPSA---- 188
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +IV + +S H P+ +
Sbjct: 189 --------------WPFLRLDRIYCGGAAAIVKSWTD---EGAAPISDHLPIIADISL 229
>gi|242081465|ref|XP_002445501.1| hypothetical protein SORBIDRAFT_07g020515 [Sorghum bicolor]
gi|241941851|gb|EES14996.1| hypothetical protein SORBIDRAFT_07g020515 [Sorghum bicolor]
Length = 378
Score = 34.0 bits (76), Expect = 6.9, Method: Composition-based stats.
Identities = 15/121 (12%), Positives = 39/121 (32%), Gaps = 15/121 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------FWQKMDPDGLLIRFPQ 57
++L++ + ++ ++ GDFN + +D +++ D +
Sbjct: 201 ADFLRELQEVHARSLGALLLCGDFNLIYQAADKNNDRLNLRIMRRFRRTLDDLAVEELYL 260
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+R +++ +L S + +D S H PL ++
Sbjct: 261 NGRLFTWSNERRHPTMERIDRAFATVPWLDLYSSHHLRALSTD-------SSDHTPLLLQ 313
Query: 118 Y 118
Sbjct: 314 L 314
>gi|256088084|ref|XP_002580189.1| carbon catabolite repressor protein [Schistosoma mansoni]
gi|238665702|emb|CAZ36428.1| carbon catabolite repressor protein, putative [Schistosoma mansoni]
Length = 658
Score = 34.0 bits (76), Expect = 6.9, Method: Composition-based stats.
Identities = 16/140 (11%), Positives = 29/140 (20%), Gaps = 37/140 (26%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNV------------ 65
+P ++ GD N S + K +
Sbjct: 442 AANMPVILCGDLNSLPESGVVEFLTNGSLSLTHSDFLNYGHKYMFKDWKLLEKWATNGNT 501
Query: 66 -IKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY--------------DQSDLDTRRSK--- 107
R + Y + + ++ Y DQ + K
Sbjct: 502 LRHRFTFNRAYRESEGMCLTNFTYDFKGMIDYVLYTRQHFRLLGSLDQIYEPWFQEKKIL 561
Query: 108 -------LSTHCPLTIEYDF 120
S H L +E +
Sbjct: 562 GCPHVHIPSDHFALLVELEL 581
>gi|229161180|ref|ZP_04289167.1| hypothetical protein bcere0009_19690 [Bacillus cereus R309803]
gi|228622276|gb|EEK79115.1| hypothetical protein bcere0009_19690 [Bacillus cereus R309803]
Length = 96
Score = 34.0 bits (76), Expect = 6.9, Method: Composition-based stats.
Identities = 9/91 (9%), Positives = 25/91 (27%), Gaps = 9/91 (9%)
Query: 41 DFWQKMDPDGLLIRFPQEKESTCNVIKRNK-SSLDYFVIDRDNKNFLIDNSFSI------ 93
W+ + + + R + ++ +I + +
Sbjct: 6 LIWKHWIDVAQFKEIEENMIAQPTLDYRKNLNLKGDVKQEKRYDWIMIQENAAFEFPTIE 65
Query: 94 --VSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ S L + S H + + +F+K
Sbjct: 66 NVSIFGDSALTSTGVFPSDHYGVFADLEFDK 96
>gi|78355714|ref|YP_387163.1| hypothetical protein Dde_0667 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|78218119|gb|ABB37468.1| hypothetical protein Dde_0667 [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 338
Score = 34.0 bits (76), Expect = 6.9, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 19/122 (15%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ L + + +P ++AGDFN +W M +L+
Sbjct: 234 REEASMLARAMVDR--AVLPVIVAGDFN-LPRESYIFRRYWSDMSDASVLL------TGY 284
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNS-FSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ L + + + V D S H P+ +
Sbjct: 285 GWTFFESLRGLPVMLAVDRVLAGNGAEARWFRVGPDVD---------SDHRPVIADVVLT 335
Query: 122 KG 123
Sbjct: 336 PA 337
>gi|15600525|ref|NP_254019.1| catabolite repression control protein [Pseudomonas aeruginosa PAO1]
gi|107104434|ref|ZP_01368352.1| hypothetical protein PaerPA_01005511 [Pseudomonas aeruginosa PACS2]
gi|116053479|ref|YP_793806.1| catabolite repression control protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218894435|ref|YP_002443305.1| catabolite repression control protein [Pseudomonas aeruginosa
LESB58]
gi|254237974|ref|ZP_04931297.1| catabolite repression control protein [Pseudomonas aeruginosa
C3719]
gi|254243782|ref|ZP_04937104.1| catabolite repression control protein [Pseudomonas aeruginosa 2192]
gi|296392192|ref|ZP_06881667.1| exodeoxyribonuclease III Xth [Pseudomonas aeruginosa PAb1]
gi|9951651|gb|AAG08717.1|AE004946_1 catabolite repression control protein [Pseudomonas aeruginosa PAO1]
gi|1079662|gb|AAC44428.1| catabolite repression control protein [Pseudomonas aeruginosa PAO1]
gi|115588700|gb|ABJ14715.1| catabolite repression control protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126169905|gb|EAZ55416.1| catabolite repression control protein [Pseudomonas aeruginosa
C3719]
gi|126197160|gb|EAZ61223.1| catabolite repression control protein [Pseudomonas aeruginosa 2192]
gi|218774664|emb|CAW30481.1| catabolite repression control protein [Pseudomonas aeruginosa
LESB58]
Length = 259
Score = 34.0 bits (76), Expect = 6.9, Method: Composition-based stats.
Identities = 10/130 (7%), Positives = 36/130 (27%), Gaps = 23/130 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGL 51
+ ++ + ++ G + + + +
Sbjct: 131 HYLSKQRRKRREYIYCGSLYVAHQKMDVKNWRECQQMPGFLAPERAWLDEVFGNLGYADA 190
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
L +E + ++ + ++ + ++ R+ + S H
Sbjct: 191 LREVSREGDQFSWWPDSEQAEMLNLGW--RFDYQVLTPGLR--RFVRNAKLPRQPRFSQH 246
Query: 112 CPLTIEYDFE 121
PL ++YD++
Sbjct: 247 APLIVDYDWQ 256
>gi|255573423|ref|XP_002527637.1| type I inositol polyphosphate 5-phosphatase, putative [Ricinus
communis]
gi|223532942|gb|EEF34708.1| type I inositol polyphosphate 5-phosphatase, putative [Ricinus
communis]
Length = 744
Score = 34.0 bits (76), Expect = 6.9, Method: Composition-based stats.
Identities = 13/123 (10%), Positives = 27/123 (21%), Gaps = 22/123 (17%)
Query: 15 QKIKTGIPFVIAGDFNRKIN--SIGDT--------------DDFWQKMDPDGLLI----- 53
Q I + GD N ++N D +++ +
Sbjct: 480 QTIPSHDQIFWFGDLNYRLNMLDSDIRKLVSLKQWDELINTDQLIKELRSGHVFDGWKEG 539
Query: 54 -RFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
R + + + + Q +LS H
Sbjct: 540 MINFPPTYKYEINSDRYIGENPKEGEKKRSPAWCDRILWYGKGIKQLFYKRTDMRLSDHR 599
Query: 113 PLT 115
P++
Sbjct: 600 PVS 602
>gi|242071919|ref|XP_002451236.1| hypothetical protein SORBIDRAFT_05g026285 [Sorghum bicolor]
gi|241937079|gb|EES10224.1| hypothetical protein SORBIDRAFT_05g026285 [Sorghum bicolor]
Length = 215
Score = 34.0 bits (76), Expect = 7.0, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 34/120 (28%), Gaps = 15/120 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------DFWQKMDPDGLLIRFPQ 57
++L + + T ++++GDFN + ++ ++ L
Sbjct: 25 VQFLHELVQFRSGTSGAWLLSGDFNMIHRASDMSNGRLDRRGMRRFRTFINQAQLDEIQL 84
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + + + + L S S HCP+ ++
Sbjct: 85 VGRAFTWTN------ARDQPTLELLDQMFVTQEW-LTRFPAHFLRPLSSDCSDHCPILLQ 137
>gi|39652285|dbj|BAD04856.1| reverse transcriptase [Takifugu rubripes]
Length = 1154
Score = 34.0 bits (76), Expect = 7.0, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 28/120 (23%), Gaps = 8/120 (6%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES-----TC 63
L + + +P V+ GDFN ++ ++ ++
Sbjct: 122 LLEDLQSHMLGRVPLVVGGDFNCILSRKDRRRTGEDFKVDKTSVLLQGICRDFKLQDCFK 181
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ R + + +D S H L+ G
Sbjct: 182 TMHPREEGFTWFSGDGTRASRIDY---VFTRDCPATDARLTPVFFSDHLMLSCTLSLPSG 238
>gi|307286889|ref|ZP_07566969.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0109]
gi|306502014|gb|EFM71301.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX0109]
gi|315165105|gb|EFU09122.1| endonuclease/exonuclease/phosphatase family protein [Enterococcus
faecalis TX1302]
Length = 351
Score = 34.0 bits (76), Expect = 7.0, Method: Composition-based stats.
Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 12/126 (9%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRK----INSIGDTDDFW-----QKMDPDGLLIRF 55
Q + L Q+ G + GDFN+ + W D
Sbjct: 229 QSKKLADVLSQEYAKGNYVIAGGDFNQVFKGSHRYPDLGEAGWAPGEIDPADLPKHFSLA 288
Query: 56 PQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+++ T V+ + + F++ ++ ++ S + K + H P+
Sbjct: 289 YDDQQPTVRVLNKPYTGSYETSQVYVIDGFIVSDNVAVHSVKTKNEQ---FKYTDHQPVK 345
Query: 116 IEYDFE 121
+E +
Sbjct: 346 MEVGLK 351
>gi|296101374|ref|YP_003611520.1| hypothetical protein ECL_01008 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295055833|gb|ADF60571.1| hypothetical protein ECL_01008 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 265
Score = 34.0 bits (76), Expect = 7.0, Method: Composition-based stats.
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 21/106 (19%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ P ++AGDFN +M+ R +E + +R K+
Sbjct: 176 DQIAHHSGPIIMAGDFNA---------WSRPRMNALYRFAREMSLREVRFSDDQRKKAFG 226
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ D ++ S H PL +E+
Sbjct: 227 RPL------------DFVFYRGLSVHDASVLVTRASDHNPLLVEFS 260
>gi|256026412|ref|ZP_05440246.1| hypothetical protein PrD11_00155 [Fusobacterium sp. D11]
gi|289764427|ref|ZP_06523805.1| dnase I -like protein dhp2 precursor [Fusobacterium sp. D11]
gi|289715982|gb|EFD79994.1| dnase I -like protein dhp2 precursor [Fusobacterium sp. D11]
Length = 278
Score = 34.0 bits (76), Expect = 7.0, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 5/106 (4%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
+ + + IAGDFN ++ D + ++T R
Sbjct: 169 NYFQDRDEKENDIFIAGDFNLYALDESFR-PLYKH--ADKITYAIDPAIKTTIGAKGRAN 225
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
S + S + + + R +S H P+ I
Sbjct: 226 SYD--NFFFSQKYSQEFTGSSGALDFSGDNPKLMREIVSDHIPVFI 269
>gi|153941384|ref|YP_001390946.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum F str. Langeland]
gi|152937280|gb|ABS42778.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum F str. Langeland]
gi|295319008|gb|ADF99385.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum F str. 230613]
Length = 263
Score = 34.0 bits (76), Expect = 7.0, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 10/120 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q L + Q ++ GDFN +N+ G L +
Sbjct: 151 FKFQANKLIEDLKQ----DETCILMGDFNNDAFLNNKGYDYIINNNFKDIYHLAKSKDNG 206
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ I K + L + + + R+ +S H + + +
Sbjct: 207 VTVIGDIDGWKGNTKN----MRLDLILSNKNLKVEYCKVIFNGIRKEIISDHFGVEAKIE 262
>gi|332097404|gb|EGJ02384.1| endonuclease/exonuclease/phosphatase family protein [Shigella
boydii 3594-74]
Length = 93
Score = 34.0 bits (76), Expect = 7.1, Method: Composition-based stats.
Identities = 17/105 (16%), Positives = 27/105 (25%), Gaps = 14/105 (13%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
++ G P ++AGDFN +D R +
Sbjct: 3 ELPDGEPVLVAGDFNDWRQKANHPLKVQAGLDE------------IFTRAHGRPARTFPV 50
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ N+ S + LS H PL+ E
Sbjct: 51 QFPLLRLDRIYVKNA--SASAPTALPLRTWRHLSDHAPLSAEIHL 93
>gi|218460525|ref|ZP_03500616.1| putative endonuclease/exonuclease/phosphatase family protein
[Rhizobium etli Kim 5]
Length = 74
Score = 34.0 bits (76), Expect = 7.1, Method: Composition-based stats.
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 103 TRRSKLSTHCPLTIEYDFE 121
R K S HCP+ + D
Sbjct: 56 WDRPKASDHCPVVMTLDLP 74
>gi|218196860|gb|EEC79287.1| hypothetical protein OsI_20089 [Oryza sativa Indica Group]
Length = 892
Score = 34.0 bits (76), Expect = 7.1, Method: Composition-based stats.
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
RN L I + + ++ + + + S H P+ +E
Sbjct: 355 FTWRNHHHLASNYIKERLDRAVANGAWRA-RFPLVRVINGDPRHSDHRPVIVE 406
>gi|45680431|gb|AAS75232.1| putative inositol-1,4,5-trisphosphate 5-phosphatase [Oryza sativa
Japonica Group]
Length = 590
Score = 34.0 bits (76), Expect = 7.1, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 26/110 (23%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKR 68
L + + + D++ + + + DG + +
Sbjct: 447 LNYRINLSYERAHELISKQDWDGLFENDQLKRELSKGHTFDGWIEGDISFPPTYKYEFDS 506
Query: 69 NKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
K D R + KLS H P+T +
Sbjct: 507 EKYVSDEPKSGRRTPAWCDRILSRGKGIRLISYRRGELKLSDHRPVTAVF 556
>gi|242066048|ref|XP_002454313.1| hypothetical protein SORBIDRAFT_04g028482 [Sorghum bicolor]
gi|241934144|gb|EES07289.1| hypothetical protein SORBIDRAFT_04g028482 [Sorghum bicolor]
Length = 509
Score = 34.0 bits (76), Expect = 7.2, Method: Composition-based stats.
Identities = 11/113 (9%), Positives = 33/113 (29%), Gaps = 4/113 (3%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ----EKESTCNVIKRNKS 71
+ +P++ GDFN + ++ + +
Sbjct: 321 RSDFDLPWLCIGDFNEILRRDEQLGPNIREDYLMEGFREAVDVCQLCDIGYMGLDWTFEK 380
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGN 124
+ R + + ++ + + L + S HCP+ + ++ +
Sbjct: 381 KVAGGHFVRVRLDRALASASWSSYFPFAVLRHLTAVKSDHCPILLSLQLDERS 433
>gi|229917706|ref|YP_002886352.1| Endonuclease/exonuclease/phosphatase [Exiguobacterium sp. AT1b]
gi|229469135|gb|ACQ70907.1| Endonuclease/exonuclease/phosphatase [Exiguobacterium sp. AT1b]
Length = 263
Score = 34.0 bits (76), Expect = 7.2, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 30/115 (26%), Gaps = 6/115 (5%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L + + ++ GDFN G+ D+ + L + +
Sbjct: 151 KHQLDELLRRV----EHDDHALLLGDFNNDAFIRGEGYDYLMENGLQDLFHLATEREGDA 206
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + D L + + + +S H +
Sbjct: 207 TV--QGKIAGWDENKKSLRIDLMLTNAPIHVSRHAVVFDGENGPVVSDHAGVEAT 259
>gi|297794109|ref|XP_002864939.1| hypothetical protein ARALYDRAFT_332725 [Arabidopsis lyrata subsp.
lyrata]
gi|297310774|gb|EFH41198.1| hypothetical protein ARALYDRAFT_332725 [Arabidopsis lyrata subsp.
lyrata]
Length = 527
Score = 34.0 bits (76), Expect = 7.2, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 26/126 (20%), Gaps = 22/126 (17%)
Query: 15 QKIKTGIPFVIAGDFN----------RKINSIGDTDDFW------------QKMDPDGLL 52
++I + GD N R + D D +
Sbjct: 364 ERIVDHDRVLWLGDLNYRVALTYEETRVLLEDNDWDTLLERDQLNMERGAGRVFSGFQEG 423
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
F + R + + +Q S+ S H
Sbjct: 424 QIFFAPTYKYSQNSDAYAGEMTKSKKKRRTPAWCDRILWRGEGIEQLSYIRGESRFSDHR 483
Query: 113 PLTIEY 118
P+ +
Sbjct: 484 PVCAIF 489
>gi|225443954|ref|XP_002272288.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 1551
Score = 34.0 bits (76), Expect = 7.2, Method: Composition-based stats.
Identities = 14/107 (13%), Positives = 29/107 (27%), Gaps = 17/107 (15%)
Query: 20 GIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---------KESTCNVIKRNK 70
P+ AGDFN + S + + + + ++
Sbjct: 135 NGPWCAAGDFNAIL-SPEERNRGGRLNSNMRRFVEIIEDLELKDVPLVGGPFTW------ 187
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
S FLI+ + + +S H P+ ++
Sbjct: 188 SGGVNNQSFSRLDRFLINEGWDNH-FGDVRQCVLPRPVSDHFPVLLD 233
>gi|170760014|ref|YP_001787009.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum A3 str. Loch Maree]
gi|169407003|gb|ACA55414.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum A3 str. Loch Maree]
Length = 263
Score = 34.0 bits (76), Expect = 7.2, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 10/120 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q L + Q ++ GDFN +N G + L +
Sbjct: 151 FKFQANKLIEDLKQ----DETCILMGDFNNDAFLNYRGYDYLINKNFKDIYHLAKSKDNG 206
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ I K + L + + + R+ +S H + + +
Sbjct: 207 VTVIGDIDGWKENTKN----MRLDLILSNKNLKVEYCKVIFNGIRKEIISDHFGVEAKIE 262
>gi|152986497|ref|YP_001351424.1| catabolite repression control protein [Pseudomonas aeruginosa PA7]
gi|150961655|gb|ABR83680.1| catabolite repression control protein [Pseudomonas aeruginosa PA7]
Length = 259
Score = 34.0 bits (76), Expect = 7.2, Method: Composition-based stats.
Identities = 10/130 (7%), Positives = 36/130 (27%), Gaps = 23/130 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGL 51
+ ++ + ++ G + + + +
Sbjct: 131 HYLSKQRRKRREYIYCGSLYVAHQKLDVKNWRECQQMPGFLAPERAWLDEVFGNLGYADA 190
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
L +E + ++ + ++ + ++ R+ + S H
Sbjct: 191 LREVSREGDQFSWWPDSEQAEMLNLGW--RFDYQVLTPGLR--RFVRNAKLPRQPRFSQH 246
Query: 112 CPLTIEYDFE 121
PL ++YD++
Sbjct: 247 APLIVDYDWQ 256
>gi|54023631|ref|YP_117873.1| hypothetical protein nfa16630 [Nocardia farcinica IFM 10152]
gi|54015139|dbj|BAD56509.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 329
Score = 34.0 bits (76), Expect = 7.2, Method: Composition-based stats.
Identities = 14/117 (11%), Positives = 25/117 (21%), Gaps = 18/117 (15%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
+ L++ D + P V+ GDFN ++ D + L
Sbjct: 230 EMRRLREVLDVQQG---PAVVGGDFNATMDHALFRDLLRGRFASAAELAGAGP---LPTW 283
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
R + + S H + E
Sbjct: 284 PADRAWGPVIGIDHVLVADGGAGRVESITIP------------GSDHRAVYAELRLP 328
>gi|254776497|ref|ZP_05218013.1| endonuclease/exonuclease/phosphatase [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 254
Score = 34.0 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 26/113 (23%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
L++ P ++ GD N ++ +
Sbjct: 166 RQLRRLIRDLRGLPGPRLLTGDLNMTPQTVRRWSGMRALGNAK-------------TFPA 212
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
LD+ + D + Q+DL +S H PL ++
Sbjct: 213 DNPNRQLDHILTDDRRLRC---------AAVQADLMP----ISDHRPLVVDLQ 252
>gi|41409338|ref|NP_962174.1| hypothetical protein MAP3240 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41398158|gb|AAS05788.1| hypothetical protein MAP_3240 [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 260
Score = 34.0 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 26/113 (23%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
L++ P ++ GD N ++ +
Sbjct: 172 RQLRRLIRDLRGLPGPRLLTGDLNMTPQTVRRWSGMRALGNAK-------------TFPA 218
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
LD+ + D + Q+DL +S H PL ++
Sbjct: 219 DNPNRQLDHILTDDRRLRC---------AAVQADLMP----ISDHRPLVVDLQ 258
>gi|71897607|ref|ZP_00679852.1| Endonuclease/exonuclease/phosphatase [Xylella fastidiosa Ann-1]
gi|182681249|ref|YP_001829409.1| endonuclease/exonuclease/phosphatase [Xylella fastidiosa M23]
gi|71732510|gb|EAO34563.1| Endonuclease/exonuclease/phosphatase [Xylella fastidiosa Ann-1]
gi|182631359|gb|ACB92135.1| Endonuclease/exonuclease/phosphatase [Xylella fastidiosa M23]
Length = 256
Score = 34.0 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 9/107 (8%), Positives = 30/107 (28%), Gaps = 21/107 (19%)
Query: 12 WADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKS 71
+ + ++ GDFN + + + + P R +
Sbjct: 163 FIADLLAEYPNTILMGDFNCRADCSEMQVLYRR-------TRLQPPGVVIPTFPSWRPER 215
Query: 72 SLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++D+ ++ + + + S H ++++
Sbjct: 216 AIDHILVSEG--------------FYICKTEAVPAAFSDHLAVSMDL 248
>gi|260223197|emb|CBA33518.1| hypothetical protein Csp_B19460 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 252
Score = 34.0 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 8/111 (7%), Positives = 25/111 (22%), Gaps = 14/111 (12%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS------ 72
++ GD N S D + + ++ + + ++
Sbjct: 143 RQERTILLGDLN----SNSIWDKPDRWWNHSDVVEELRAIGLQSAYHRQTGEAQGQESTP 198
Query: 73 ----LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + S H P+++
Sbjct: 199 TFFLHRNVEKAYHIDYVFVSDDLLDQARLDVGDSSAWLNSSDHMPVSLTIS 249
>gi|242062000|ref|XP_002452289.1| hypothetical protein SORBIDRAFT_04g023082 [Sorghum bicolor]
gi|241932120|gb|EES05265.1| hypothetical protein SORBIDRAFT_04g023082 [Sorghum bicolor]
Length = 714
Score = 34.0 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 15/123 (12%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFP 56
Q +L + P++ GDFN + + ++ L P
Sbjct: 83 QVLFLDDLLSYGSNSPFPWLAVGDFNMIYRAADKNNSRLNCRSMCRFRSFINRAQLEEVP 142
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+R + + + ++ + ++ + L + S HCPL +
Sbjct: 143 LIGRHFTWSNER-------ENPTLELLDRVFGSTDWMATFPRHMLRPLSTDCSDHCPLLL 195
Query: 117 EYD 119
++D
Sbjct: 196 QFD 198
>gi|242043562|ref|XP_002459652.1| hypothetical protein SORBIDRAFT_02g008042 [Sorghum bicolor]
gi|241923029|gb|EER96173.1| hypothetical protein SORBIDRAFT_02g008042 [Sorghum bicolor]
Length = 593
Score = 34.0 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 25/104 (24%), Gaps = 15/104 (14%)
Query: 22 PFVIAGDFNRKINSIGDTDD--------FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
P +I GDFN D + D L + + NK S
Sbjct: 135 PIIIGGDFNLIREESDKNSDNVNFHLMDQFNTFIGDHQLRELKRSGQRYTWT---NKQSK 191
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
V +S S H P+ ++
Sbjct: 192 PIMVNLDRVLFSSGWEEKYPLSLSWCLTRVG----SDHSPVIVD 231
>gi|323451222|gb|EGB07100.1| hypothetical protein AURANDRAFT_28452 [Aureococcus anophagefferens]
Length = 126
Score = 34.0 bits (76), Expect = 7.4, Method: Composition-based stats.
Identities = 10/123 (8%), Positives = 24/123 (19%), Gaps = 8/123 (6%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN---- 64
L D + + G + + + G L +
Sbjct: 1 LNYRLDLPREEAERGALVGGLDALLEHDQLRRERAAGRAFGGFLEGPVAFAPTFKFDKRS 60
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ----SDLDTRRSKLSTHCPLTIEYDF 120
+ + + + + S + S H P+ +
Sbjct: 61 NRYDSSKKMRVPSWTDRVLYTPRAPAATRGRRPELMLASYDAVDAATHSDHRPVVATFRL 120
Query: 121 EKG 123
G
Sbjct: 121 SPG 123
>gi|330936314|ref|XP_003305336.1| hypothetical protein PTT_18151 [Pyrenophora teres f. teres 0-1]
gi|311317679|gb|EFQ86565.1| hypothetical protein PTT_18151 [Pyrenophora teres f. teres 0-1]
Length = 1233
Score = 34.0 bits (76), Expect = 7.4, Method: Composition-based stats.
Identities = 12/122 (9%), Positives = 31/122 (25%), Gaps = 17/122 (13%)
Query: 14 DQKIKTGIPFVIAGDFNR----------------KINSIGDTDDFWQKMDPDGLLIRFPQ 57
++ I+ + GDFN + ++ + D +M + +
Sbjct: 796 NRSIEDHDTVIWFGDFNYRIGLNNEKVQRLCHVGDLETLYENDQLNLQMVAGLTFPYYSE 855
Query: 58 EKESTCNVI-KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + S + + Q + + S H P+
Sbjct: 856 ARITFPPTYKYDLNSDQYDTSEKARIPAWCDRVLRKGDNIRQIQYNDAPLRFSDHRPVYA 915
Query: 117 EY 118
+
Sbjct: 916 TF 917
>gi|93006524|ref|YP_580961.1| endonuclease/exonuclease/phosphatase [Psychrobacter cryohalolentis
K5]
gi|92394202|gb|ABE75477.1| Endonuclease/exonuclease/phosphatase [Psychrobacter cryohalolentis
K5]
Length = 373
Score = 34.0 bits (76), Expect = 7.4, Method: Composition-based stats.
Identities = 14/105 (13%), Positives = 27/105 (25%), Gaps = 18/105 (17%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFW-QKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYF 76
++AGD N S + + F N ++Y
Sbjct: 242 DNKQTAILAGDLNDVAWSQTTRRFQRISGLLDPRIGRHFI------------NTFHVNYP 289
Query: 77 VIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ + + D++ S S H P+ +E
Sbjct: 290 FLRWALDHLFHSAC-----FTVIDIERLPSIGSDHFPVMTTLQYE 329
>gi|257468371|ref|ZP_05632465.1| hypothetical protein FulcA4_03459 [Fusobacterium ulcerans ATCC
49185]
gi|317062644|ref|ZP_07927129.1| dnase I-like protein dhp2 precursor [Fusobacterium ulcerans ATCC
49185]
gi|313688320|gb|EFS25155.1| dnase I-like protein dhp2 precursor [Fusobacterium ulcerans ATCC
49185]
Length = 274
Score = 34.0 bits (76), Expect = 7.5, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 10/127 (7%)
Query: 3 SQQGEWLK-----KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ 57
+++ E K + +IAGDFN F + + +I
Sbjct: 152 ARRAEAFKMNEVYDYFQNLDLKENDVIIAGDFNLSGFDES----FEKLLSHPDKIIYALS 207
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
T K SS D + S + + Q + K+S H P+ I
Sbjct: 208 PVIKTTLGKKSLASSYDNMFLSTIYTKEFTGKS-GALDFTQGQYRLMKDKISDHLPIFIV 266
Query: 118 YDFEKGN 124
+ +
Sbjct: 267 VKISEDD 273
>gi|168209037|ref|ZP_02634662.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens B str. ATCC 3626]
gi|170712739|gb|EDT24921.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
perfringens B str. ATCC 3626]
Length = 263
Score = 34.0 bits (76), Expect = 7.5, Method: Composition-based stats.
Identities = 15/110 (13%), Positives = 27/110 (24%), Gaps = 2/110 (1%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
+K ++ GDFN + DF + + V K
Sbjct: 154 QVKNLIAHAKESKNRAFFMGDFNNNAFLKNEGYDFLKSNGLIDTYDLAENKDSGVT-VNK 212
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
D + + + + + +S H L IE
Sbjct: 213 NIAGWEDNTG-ELRIDIIFTNRNIKVYDSRVIFNGKNKEVVSDHFGLEIE 261
>gi|257870899|ref|ZP_05650552.1| endonuclease/exonuclease/phosphatase [Enterococcus gallinarum EG2]
gi|257805063|gb|EEV33885.1| endonuclease/exonuclease/phosphatase [Enterococcus gallinarum EG2]
Length = 270
Score = 34.0 bits (76), Expect = 7.5, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 8/116 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
QQ E + ++ + ++ GDFN + +S+G + + +
Sbjct: 163 QQTEA---FLTERAAS---LLLLGDFNNEADSLGYQLVKNSSLQLQDSFLAATKTIGEAS 216
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
V D + V Y+ R +S H + + ++
Sbjct: 217 VVK-AIDGWQDNQ-TALRIDYVFASQNEQPVEYEVVFDGQRLPIVSDHFGICVVFE 270
>gi|237794947|ref|YP_002862499.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum Ba4 str. 657]
gi|229262666|gb|ACQ53699.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum Ba4 str. 657]
Length = 263
Score = 34.0 bits (76), Expect = 7.5, Method: Composition-based stats.
Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 10/120 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q L + Q ++ GDFN +N G + L +
Sbjct: 151 FKFQANKLIEDLRQ----DEICILMGDFNNDAFLNYRGYDYLINKNFKDIYHLAKSKDNG 206
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ I K + L + + + R+ +S H + + +
Sbjct: 207 VTVIGDIDGWKGNTKN----MRLDLILSNKNLKVEYCKVIFNGIRKEIISDHFGVEAKIE 262
>gi|315445296|ref|YP_004078175.1| metal-dependent hydrolase [Mycobacterium sp. Spyr1]
gi|315263599|gb|ADU00341.1| metal-dependent hydrolase [Mycobacterium sp. Spyr1]
Length = 263
Score = 34.0 bits (76), Expect = 7.6, Method: Composition-based stats.
Identities = 16/112 (14%), Positives = 27/112 (24%), Gaps = 26/112 (23%)
Query: 8 WLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIK 67
L P+++ GD N R +
Sbjct: 167 QLHHLMRDVRGLPSPWIVTGDLNMPAKPARRWS-------------RLHCLASAPTFPAD 213
Query: 68 RNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
R LD+ + D + DT +S H PL ++ +
Sbjct: 214 RPTRQLDHVLTDEPA-------------FTIRSYDTPEMAISDHRPLVVDLE 252
>gi|262280853|ref|ZP_06058636.1| endonuclease/Exonuclease/phosphatase [Acinetobacter calcoaceticus
RUH2202]
gi|262257753|gb|EEY76488.1| endonuclease/Exonuclease/phosphatase [Acinetobacter calcoaceticus
RUH2202]
Length = 373
Score = 34.0 bits (76), Expect = 7.6, Method: Composition-based stats.
Identities = 12/106 (11%), Positives = 25/106 (23%), Gaps = 16/106 (15%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
DQ ++ GD N S +Q++ +
Sbjct: 231 DQIKDLDESCIVMGDLNDVAWSRTTR--LFQRISGLLDPRVGRHFINTFH---------A 279
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
DY ++ + + + S H P+ +
Sbjct: 280 DYPLLRWSLDHIFHS-----TDFGLVKMKRLPHIGSDHFPVYVVLQ 320
>gi|209964341|ref|YP_002297256.1| hypothetical protein RC1_1020 [Rhodospirillum centenum SW]
gi|209957807|gb|ACI98443.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 322
Score = 34.0 bits (76), Expect = 7.6, Method: Composition-based stats.
Identities = 15/137 (10%), Positives = 32/137 (23%), Gaps = 29/137 (21%)
Query: 10 KKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE---------KE 60
+ ++ + GDFN + + D Q
Sbjct: 182 HQRILEEKGRDTAILAMGDFNDEPFNRSLQDYALATRARSKATHPQSQSFYNPMWRFLGS 241
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS---------KLS-- 109
+ V + LD ++ R + + L R+ + S
Sbjct: 242 AGSYVYDGEPNVLDQILVSRGLLRRGAPLTVREETLAIEALPALRTAKGGGRKFGRPSEP 301
Query: 110 ---------THCPLTIE 117
H P+++
Sbjct: 302 KSYDPDGYADHFPVSVT 318
>gi|326927917|ref|XP_003210134.1| PREDICTED: 2',5'-phosphodiesterase 12-like, partial [Meleagris
gallopavo]
Length = 321
Score = 34.0 bits (76), Expect = 7.7, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 37/142 (26%), Gaps = 22/142 (15%)
Query: 2 LSQQGEWLKK--WADQKIKTGIPFVIAGDFNRKINS------------IGDTDDFWQKMD 47
L Q L + + IP + GDFN +S D +
Sbjct: 180 LIQIAVALSHIKYVACDLYPNIPVIFCGDFNSTPSSGTYGFINTGGIAEDHEDWASNGEE 239
Query: 48 PDGLLIRFPQ-------EKESTCNVIKRNKSSLDYFVIDRDNKNF-LIDNSFSIVSYDQS 99
+ + + N + LDY IDR+ + S
Sbjct: 240 ERCNMPLSHPFKLQSACGEPAYTNYVGGFYGCLDYIFIDRNALEVEQVIPLPSHEEVTTH 299
Query: 100 DLDTRRSKLSTHCPLTIEYDFE 121
S S H L + ++
Sbjct: 300 QALPSVSHPSDHIALVCDLKWK 321
>gi|145594579|ref|YP_001158876.1| sphingomyelin phosphodiesterase [Salinispora tropica CNB-440]
gi|145303916|gb|ABP54498.1| Sphingomyelin phosphodiesterase [Salinispora tropica CNB-440]
Length = 318
Score = 34.0 bits (76), Expect = 7.7, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 30/132 (22%), Gaps = 23/132 (17%)
Query: 5 QGEWLKKWADQKI-KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
Q + L + D + T ++AGD N S + D
Sbjct: 192 QFDELDAFLDARQIPTDEQVIVAGDLNVDRYSTEYDSMLTRLDVSDATFT-----GHPYS 246
Query: 64 NVIKRNKS--SLDYFVIDRDNKNFLIDNSFSIVSYDQS----DLDTRRSKLS-------- 109
+RN D + L N + + + S
Sbjct: 247 WDAQRNDMADYNDDQDSRQQLDYVLQRNGHARHGSGDNETLAVEAPQWCVTSWFVRYCYT 306
Query: 110 ---THCPLTIEY 118
H P+
Sbjct: 307 DYADHYPVAANI 318
>gi|332666014|ref|YP_004448802.1| endonuclease/exonuclease/phosphatase [Haliscomenobacter hydrossis
DSM 1100]
gi|332334828|gb|AEE51929.1| Endonuclease/exonuclease/phosphatase [Haliscomenobacter hydrossis
DSM 1100]
Length = 237
Score = 34.0 bits (76), Expect = 7.7, Method: Composition-based stats.
Identities = 14/123 (11%), Positives = 35/123 (28%), Gaps = 17/123 (13%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ L + +++ ++ GDFN S D + + ++ + ++ +
Sbjct: 119 KALHHY--EQLLNSERSILTGDFN----SNKIWDRPRRVGNHSAVVEKLAEKNIYSVYHR 172
Query: 67 KRNKSS----------LDYFVIDRDNKNFLIDNSF-SIVSYDQSDLDTRRSKLSTHCPLT 115
N+ F V+ + + S H PL
Sbjct: 173 YLNQEQGKENDPTFFLYRNKDKSYHIDYCFTSAEFYHQVTAVEIGNYEQWINFSDHTPLI 232
Query: 116 IEY 118
+ +
Sbjct: 233 VNF 235
>gi|223932635|ref|ZP_03624635.1| Endonuclease/exonuclease/phosphatase [Streptococcus suis 89/1591]
gi|330832220|ref|YP_004401045.1| endonuclease/exonuclease/phosphatase [Streptococcus suis ST3]
gi|223898745|gb|EEF65106.1| Endonuclease/exonuclease/phosphatase [Streptococcus suis 89/1591]
gi|329306443|gb|AEB80859.1| Endonuclease/exonuclease/phosphatase [Streptococcus suis ST3]
Length = 263
Score = 34.0 bits (76), Expect = 7.7, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 34/107 (31%), Gaps = 2/107 (1%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
++ ++ GDFN S + + ++ ++ + V K
Sbjct: 158 IVERTGNRRFKILMGDFNTDAFSDREAYEAITELGLYDSYNLAMEKDQGIT-VEKAIDGW 216
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++ ++ ++S R +S H + +E +
Sbjct: 217 AGHS-QEKRLDYIFLNQKKEVLSSLVIFNGENRPIISDHFGVEVEIN 262
>gi|297191498|ref|ZP_06908896.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197722060|gb|EDY65968.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 356
Score = 34.0 bits (76), Expect = 7.8, Method: Composition-based stats.
Identities = 11/118 (9%), Positives = 27/118 (22%), Gaps = 21/118 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+ + L + + V+ GD N + + + +
Sbjct: 260 DRNAQALGEALAA--ERNERVVLLGDLNGTTDDR-----AFAGITSLMRSAQDEAGDGFG 312
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ ID+ + S ++ S H P+ +
Sbjct: 313 FTW----PAKFPVVRIDQILVRGVEPQSSWVLPA----------TGSDHLPVAARISW 356
>gi|119470261|ref|ZP_01613020.1| putative orphan protein [Alteromonadales bacterium TW-7]
gi|119446433|gb|EAW27708.1| putative orphan protein [Alteromonadales bacterium TW-7]
Length = 387
Score = 34.0 bits (76), Expect = 7.8, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 34/113 (30%), Gaps = 11/113 (9%)
Query: 17 IKTGIPFVIAGDFNRKIN---------SIGDTDDF-WQKMDPDGLLIRFPQEKESTCNVI 66
++ FVI GD N + + P + E +
Sbjct: 272 LEAQSRFVILGDLNAAPEGDKARLETTDQLLKNPLVNAQFVPKSAGAKQQYELAYAQHFT 331
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIV-SYDQSDLDTRRSKLSTHCPLTIEY 118
++ +DY + + F V S +Q L RS S H + ++
Sbjct: 332 ANWQARVDYVLPSTYGLDIKEGGVFWPVESNEQYRLIKDRSASSDHRLVWLDL 384
>gi|146318051|ref|YP_001197763.1| metal-dependent hydrolase [Streptococcus suis 05ZYH33]
gi|253751249|ref|YP_003024390.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
suis SC84]
gi|253753150|ref|YP_003026290.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
suis P1/7]
gi|253754973|ref|YP_003028113.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
suis BM407]
gi|145688857|gb|ABP89363.1| Metal-dependent hydrolase [Streptococcus suis 05ZYH33]
gi|251815538|emb|CAZ51120.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
suis SC84]
gi|251817437|emb|CAZ55177.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
suis BM407]
gi|251819395|emb|CAR44833.1| endonuclease/exonuclease/phosphatase family protein [Streptococcus
suis P1/7]
gi|292557816|gb|ADE30817.1| phosphatase [Streptococcus suis GZ1]
gi|319757526|gb|ADV69468.1| metal-dependent hydrolase [Streptococcus suis JS14]
Length = 263
Score = 34.0 bits (76), Expect = 7.8, Method: Composition-based stats.
Identities = 12/107 (11%), Positives = 34/107 (31%), Gaps = 2/107 (1%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
++ ++ GDFN S + + ++ ++ + V K
Sbjct: 158 IVERTGNRRFKILMGDFNTDAFSDREAYEAITELGLYDSYNLAMEKDQGIT-VEKAIDGW 216
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++ ++ ++S R +S H + +E +
Sbjct: 217 AGHS-QEKRLDYIFLNQKKEVLSSLVIFNGENRPIISDHFGVEVEIN 262
>gi|23466288|ref|NP_696891.1| hypothetical protein BL1743 [Bifidobacterium longum NCC2705]
gi|23327039|gb|AAN25527.1| hypothetical transmembrane protein with unknown function
[Bifidobacterium longum NCC2705]
Length = 370
Score = 34.0 bits (76), Expect = 7.8, Method: Composition-based stats.
Identities = 11/102 (10%), Positives = 22/102 (21%), Gaps = 13/102 (12%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ T ++ GDFN + D + + R +
Sbjct: 278 REHTDTRYIFMGDFNATYDHTPFRDFLGDRFVDAARE---SGHGFTFSWPTNRAAVPMFA 334
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + +V + S H L
Sbjct: 335 GIDHVVLDQGMKAGQCKVVKVE----------GSDHAALLAT 366
>gi|313106759|ref|ZP_07792975.1| catabolite repression control protein [Pseudomonas aeruginosa
39016]
gi|310879477|gb|EFQ38071.1| catabolite repression control protein [Pseudomonas aeruginosa
39016]
Length = 254
Score = 33.7 bits (75), Expect = 7.9, Method: Composition-based stats.
Identities = 10/130 (7%), Positives = 36/130 (27%), Gaps = 23/130 (17%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDD-------------------FWQKMDPDGL 51
+ ++ + ++ G + + + +
Sbjct: 126 HYLSKQRRKRREYIYCGSLYVAHQKMDVKNWRECQQMPGFLAPERAWLDEVFGNLGYADA 185
Query: 52 LIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
L +E + ++ + ++ + ++ R+ + S H
Sbjct: 186 LREVSREGDQFSWWPDSEQAEMLNLGW--RFDYQVLTPGLR--RFVRNAKLPRQPRFSQH 241
Query: 112 CPLTIEYDFE 121
PL ++YD++
Sbjct: 242 APLIVDYDWQ 251
>gi|297846392|ref|XP_002891077.1| inositol polyphosphate 5-phosphatase I [Arabidopsis lyrata subsp.
lyrata]
gi|297336919|gb|EFH67336.1| inositol polyphosphate 5-phosphatase I [Arabidopsis lyrata subsp.
lyrata]
Length = 591
Score = 33.7 bits (75), Expect = 7.9, Method: Composition-based stats.
Identities = 17/126 (13%), Positives = 32/126 (25%), Gaps = 20/126 (15%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDT------DDFWQKMDPDGLLIRFPQEKESTCNVI 66
+ I+ + GD N +IN + WQ++ L R +
Sbjct: 438 IPRSIRDHERIIWLGDLNYRINLSYEKTHELIARKEWQRLVEYDQLSREMTKGNVFEGWS 497
Query: 67 KRNKSSL--------------DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ D + + + + KLS H
Sbjct: 498 EGTLDFPPTYKYEIDSENYIGDDPESGKRRPAWCDRIIWKGKGMKLFNYRRNEIKLSDHR 557
Query: 113 PLTIEY 118
P+T +
Sbjct: 558 PVTATF 563
>gi|254515845|ref|ZP_05127905.1| exodeoxyribonuclease III [gamma proteobacterium NOR5-3]
gi|219675567|gb|EED31933.1| exodeoxyribonuclease III [gamma proteobacterium NOR5-3]
Length = 253
Score = 33.7 bits (75), Expect = 7.9, Method: Composition-based stats.
Identities = 15/129 (11%), Positives = 30/129 (23%), Gaps = 22/129 (17%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTD----------------DFWQKMDPDGLL 52
L ++ FVI G++ + + + +D
Sbjct: 130 LGAHLEKVRNKRRKFVICGNWRIAHTAADMQNSAENSNRSGFLPEERQWIDELLDSGYRD 189
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+S + D +I + S H
Sbjct: 190 AFRQVSTDSDAYTYWPRERGEDG----WRIDLQIISEELQYS--VEHAAIYTGESFSRHA 243
Query: 113 PLTIEYDFE 121
P+ I+YD +
Sbjct: 244 PVIIDYDID 252
>gi|145544246|ref|XP_001457808.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425626|emb|CAK90411.1| unnamed protein product [Paramecium tetraurelia]
Length = 239
Score = 33.7 bits (75), Expect = 7.9, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 25/111 (22%), Gaps = 3/111 (2%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ S Q + + + ++ + GDFN S L + E
Sbjct: 123 VRSHQIDNILTYLLGQM--NERIFLMGDFNLTPESQEYKKMTHYFKSSYTLANQKEPEIT 180
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTH 111
+ D + + SD S H
Sbjct: 181 FPTGLTGPF-MDTDPAGTFDYIWIRGNNIEVKECTLFGSDKIQEGVYPSDH 230
>gi|74825508|sp|Q9NBX4|RTXE_DROME RecName: Full=Probable RNA-directed DNA polymerase from transposon
X-element; AltName: Full=Reverse transcriptase
gi|8925303|gb|AAF81411.1|AF237761_2 unknown [Drosophila melanogaster]
Length = 908
Score = 33.7 bits (75), Expect = 7.9, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 31/115 (26%), Gaps = 19/115 (16%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKI------NSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
++ D + F++AGD+N S + +
Sbjct: 120 EFKDILEEFQTKFIVAGDWNASHWLWGAGRSNQRGIALANLVLNSEVDSLATGGPTRYPY 179
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + +D+ + ++ +S S H PL I D
Sbjct: 180 GCRGSPGYIDFALTKGVLGIHANISAVVELS-------------SDHLPLVITLD 221
>gi|320547790|ref|ZP_08042074.1| RgfB protein [Streptococcus equinus ATCC 9812]
gi|320447550|gb|EFW88309.1| RgfB protein [Streptococcus equinus ATCC 9812]
Length = 271
Score = 33.7 bits (75), Expect = 8.0, Method: Composition-based stats.
Identities = 14/107 (13%), Positives = 26/107 (24%), Gaps = 2/107 (1%)
Query: 14 DQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
P V+ GDFN + Q + + + +I+
Sbjct: 167 KALSDYPKPLVLMGDFN-NPTDTAGYEMILQSPLDLQDSHKVAKVIQGDHTIIEDIDGWE 225
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ I S +S H L +E ++
Sbjct: 226 GNK-QSLKVDHVFTSKDIDIQSSKVVFDGGESPIVSDHFGLAVELNY 271
>gi|301063079|ref|ZP_07203640.1| endonuclease/exonuclease/phosphatase family protein [delta
proteobacterium NaphS2]
gi|300442799|gb|EFK07003.1| endonuclease/exonuclease/phosphatase family protein [delta
proteobacterium NaphS2]
Length = 333
Score = 33.7 bits (75), Expect = 8.0, Method: Composition-based stats.
Identities = 12/101 (11%), Positives = 30/101 (29%), Gaps = 4/101 (3%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+ +AGDFN NS+ ++++ L + + + ++
Sbjct: 228 DDRPVWFLAGDFNATENSLEI--AKIRRLNFLDLCPDKGTGTKRGK--KGQKAALTLDYI 283
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
+ V + +S H P+ ++
Sbjct: 284 FAGPAYYAFDPQTVKQVLEETGRPPLYEVTVSDHYPIIAKF 324
>gi|320009290|gb|ADW04140.1| Endonuclease/exonuclease/phosphatase [Streptomyces flavogriseus
ATCC 33331]
Length = 324
Score = 33.7 bits (75), Expect = 8.0, Method: Composition-based stats.
Identities = 10/100 (10%), Positives = 26/100 (26%), Gaps = 23/100 (23%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
++ GD N ++ + ++P L+ P +
Sbjct: 248 ERVILLGDLNSTLDD--------RGLEPVTELMDEPGPGFAFSWP--------------- 284
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ S + + + + S H P+ +
Sbjct: 285 AAFPVARIDQILTRSATVTGIRSLPATGSDHLPVVADVRL 324
>gi|262197611|ref|YP_003268820.1| endonuclease/exonuclease/phosphatase [Haliangium ochraceum DSM
14365]
gi|262080958|gb|ACY16927.1| Endonuclease/exonuclease/phosphatase [Haliangium ochraceum DSM
14365]
Length = 277
Score = 33.7 bits (75), Expect = 8.0, Method: Composition-based stats.
Identities = 13/120 (10%), Positives = 24/120 (20%), Gaps = 24/120 (20%)
Query: 5 QGEWLKKWADQKIK--TGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
Q + + A G P V+ GD N + + G
Sbjct: 177 QIDVILAHAAALEDAHPGAPCVLLGDLNTLSCPLWPPAREPALDALGEHGFRSAI----- 231
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+I + + + S H P+ +
Sbjct: 232 ---------AGFRATALIPYQLDWIFYRHLALAEARVIGRVH------SDHLPVCARFHL 276
>gi|291457367|ref|ZP_06596757.1| hypothetical protein BIFBRE_04610 [Bifidobacterium breve DSM 20213]
gi|291381202|gb|EFE88720.1| hypothetical protein BIFBRE_04610 [Bifidobacterium breve DSM 20213]
Length = 317
Score = 33.7 bits (75), Expect = 8.0, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 26/104 (25%), Gaps = 13/104 (12%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ T ++ GDFN + + + Q N+S L
Sbjct: 225 RSHTDARYIFMGDFNATYDHTPFREFLGNRFVDA-----AHQSGHGFTFSWPTNRSYLP- 278
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ ++D + + + S H L
Sbjct: 279 --TFAGIDHVVLDTGMTAGQCQIAKIA-----GSDHAALLATIS 315
>gi|154276148|ref|XP_001538919.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150413992|gb|EDN09357.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 301
Score = 33.7 bits (75), Expect = 8.0, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 24/105 (22%), Gaps = 7/105 (6%)
Query: 23 FVIAGDFNRKINSIGDTDDFW---QKMDPDGLLIRFPQEKESTCNVIKRN----KSSLDY 75
+AGDFN + + Q +D + + +DY
Sbjct: 196 IFLAGDFNSEEDQEAYRVLTAVDSQFVDAQKQVDTALRYGSENTYTGFGYEDEGPKRIDY 255
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + + S H + + +
Sbjct: 256 VLFGPKRGANPAWSWSIEGYAVVPNKFDDGVLNSDHRAVVADAEL 300
>gi|4582447|gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1524
Score = 33.7 bits (75), Expect = 8.0, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 30/105 (28%), Gaps = 3/105 (2%)
Query: 18 KTGIPFVIAGDFN-RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS--LD 74
+++ GDFN N+ ++ S
Sbjct: 281 NRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGER 340
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + NS ++ ++ + S H P+ + ++
Sbjct: 341 HTHTVKCCLDRVFINSAWTATFPYAETEFLDFTGSDHKPVLVHFN 385
>gi|289774208|ref|ZP_06533586.1| secreted protein [Streptomyces lividans TK24]
gi|289704407|gb|EFD71836.1| secreted protein [Streptomyces lividans TK24]
Length = 274
Score = 33.7 bits (75), Expect = 8.1, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 27/113 (23%), Gaps = 16/113 (14%)
Query: 5 QGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L++ A I T P ++ GDFN + D + + +
Sbjct: 171 QADRLQQTAQVVDLIGTRKPGILVGDFNALPAAPESQPLQNAYTDAWAKSLHARGDGATY 230
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + D S H PL
Sbjct: 231 P-----------AQSPTERIDLIYATRRVTPLVAQVLKDDPA---ASDHRPLL 269
>gi|256790330|ref|ZP_05528761.1| secreted protein [Streptomyces lividans TK24]
Length = 279
Score = 33.7 bits (75), Expect = 8.1, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 27/113 (23%), Gaps = 16/113 (14%)
Query: 5 QGEWLKKWAD--QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
Q + L++ A I T P ++ GDFN + D + + +
Sbjct: 176 QADRLQQTAQVVDLIGTRKPGILVGDFNALPAAPESQPLQNAYTDAWAKSLHARGDGATY 235
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + D S H PL
Sbjct: 236 P-----------AQSPTERIDLIYATRRVTPLVAQVLKDDPA---ASDHRPLL 274
>gi|255039474|ref|YP_003090095.1| Endonuclease/exonuclease/phosphatase [Dyadobacter fermentans DSM
18053]
gi|254952230|gb|ACT96930.1| Endonuclease/exonuclease/phosphatase [Dyadobacter fermentans DSM
18053]
Length = 233
Score = 33.7 bits (75), Expect = 8.1, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 32/121 (26%), Gaps = 20/121 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTG-IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
++ + + + +Q + P ++ D + N +
Sbjct: 131 VMDRALQA--AYINQMLVNSVQPVLLGMDMGARPNEQPY-------FSFRRNWQDAARGS 181
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ LDY ++N I +Y +S H P+ +
Sbjct: 182 QMQTWNEGLPGDRLDYIFAL-------LNNKVRIKNYKVIRNYPD---VSDHYPIQATIE 231
Query: 120 F 120
F
Sbjct: 232 F 232
>gi|241889785|ref|ZP_04777083.1| metal-dependent hydrolase [Gemella haemolysans ATCC 10379]
gi|241863407|gb|EER67791.1| metal-dependent hydrolase [Gemella haemolysans ATCC 10379]
Length = 264
Score = 33.7 bits (75), Expect = 8.1, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 2/95 (2%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
V GDFN DD+ + +D EK+ + +N S + + +
Sbjct: 169 VFMGDFNTDYFHQV--DDYKRILDKGLYDTYELAEKKDGGVTVYKNISGWEDSMCQKKLD 226
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
I+ + D +S H L +
Sbjct: 227 YVFINRKLDVKESFVIFNDDNYPIISDHNGLEVTL 261
>gi|297201073|ref|ZP_06918470.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
gi|197712142|gb|EDY56176.1| integral membrane protein [Streptomyces sviceus ATCC 29083]
Length = 315
Score = 33.7 bits (75), Expect = 8.1, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 32/118 (27%), Gaps = 17/118 (14%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
++ L+ +A P V+AGDFN + + L +
Sbjct: 211 RRELGKLRDFAATTRS---PTVLAGDFNASQDHAAFRAILDTGLRDAARLA---GSGRTP 264
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ + I + L+ FS DL H L ++
Sbjct: 265 TWPARTAPA------IGAQIDHVLVSADFSARDARFLDLADT-----DHRALLVDITL 311
>gi|156977170|ref|YP_001448076.1| hypothetical protein VIBHAR_05956 [Vibrio harveyi ATCC BAA-1116]
gi|156528764|gb|ABU73849.1| hypothetical protein VIBHAR_05956 [Vibrio harveyi ATCC BAA-1116]
Length = 317
Score = 33.7 bits (75), Expect = 8.1, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 40/134 (29%), Gaps = 17/134 (12%)
Query: 5 QGEWLKKWADQKIKTGI-PFVIAGDFNRKINSIGDTDDFWQKMDP--------DGLLIRF 55
+ L+ + P ++ GD N+ I + ++ DG ++
Sbjct: 183 EAAMLRDAMQKHYANNPMPTLLMGDMNQAITKTSVNNVLVEQYGDSVTDLQLCDGWELQV 242
Query: 56 PQEKESTCNVIKRNKSS--LDYFVIDRDNKNFLIDNSFSIVSYDQSDL------DTRRSK 107
ES LDY ++ ++ + + +Y D R
Sbjct: 243 APSLESRPATHYDFAKGNVLDYILLSQEFDAHADVSIAEVTNYQVLDTHLINPSFERDKN 302
Query: 108 LSTHCPLTIEYDFE 121
S H + + + +
Sbjct: 303 ASDHAFVALTVEIK 316
>gi|58532025|emb|CAD41563.3| OSJNBa0006A01.18 [Oryza sativa Japonica Group]
Length = 1189
Score = 33.7 bits (75), Expect = 8.1, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 15/117 (12%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------FWQKMDPDGLLIRFPQEKE 60
L+ + G ++I GDFN + + ++ + L P +
Sbjct: 126 LRHIRRLRPSPGEGWLILGDFNMIYRARDKNNSNLNLARMRRFRAVIDRCELHEIPLQNR 185
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+R K+ + N +++ L + S H PL +
Sbjct: 186 KFTWSNERRKA-------TLVKLDRCFCNEEWDLAFPHHVLHALPTGPSDHYPLVLS 235
>gi|242062132|ref|XP_002452355.1| hypothetical protein SORBIDRAFT_04g024215 [Sorghum bicolor]
gi|241932186|gb|EES05331.1| hypothetical protein SORBIDRAFT_04g024215 [Sorghum bicolor]
Length = 1212
Score = 33.7 bits (75), Expect = 8.2, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 35/120 (29%), Gaps = 15/120 (12%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD--------DFWQKMDPDGLLIRFPQ 57
++L + + T ++++GDFN + ++ ++ L
Sbjct: 158 VQFLHELVQFRAGTSGAWLLSGDFNMIHRASDKSNGRLDRRGMRRFRNFINQAQLDEIQL 217
Query: 58 EKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ S+ + + + L S S HCP+ ++
Sbjct: 218 VGRAFTW------SNARDQPTLELLDRMFVTQEWLA-RFPAHFLRPLSSDCSDHCPILLQ 270
>gi|239621676|ref|ZP_04664707.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|317482419|ref|ZP_07941436.1| endonuclease/Exonuclease/phosphatase [Bifidobacterium sp.
12_1_47BFAA]
gi|239515551|gb|EEQ55418.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|316916079|gb|EFV37484.1| endonuclease/Exonuclease/phosphatase [Bifidobacterium sp.
12_1_47BFAA]
Length = 370
Score = 33.7 bits (75), Expect = 8.2, Method: Composition-based stats.
Identities = 11/102 (10%), Positives = 22/102 (21%), Gaps = 13/102 (12%)
Query: 16 KIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDY 75
+ T ++ GDFN + D + + R +
Sbjct: 278 REHTDTRYIFMGDFNATYDHTPFRDFLGDRFVDAARE---SGHGFTFSWPTNRAAVPMFA 334
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+ + +V + S H L
Sbjct: 335 GIDHVVLDQGMKAGQCKVVKVE----------GSDHAALLAT 366
>gi|225429104|ref|XP_002269440.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 656
Score = 33.7 bits (75), Expect = 8.2, Method: Composition-based stats.
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 15/105 (14%)
Query: 21 IPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKESTCNVIKRNKSS 72
P+ I GDFN ++ + + ++ D L+ P + RN
Sbjct: 93 DPWCIGGDFNVVLSQRERSSQGRISGAMRRFAQVVDDLELLDLPLQGGVFSWSGGRNNQ- 151
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
FL+ + S H P+ ++
Sbjct: 152 -----AWARLDRFLVTQCWPDNFCGI-VQCRLPRPTSDHFPIMLK 190
>gi|326515450|dbj|BAK03638.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1193
Score = 33.7 bits (75), Expect = 8.3, Method: Composition-based stats.
Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 15/118 (12%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD--------FWQKMDPDGLLIRFPQE 58
+L + + P++I GDFN + + ++ L
Sbjct: 125 RFLLELSRSAPPAAEPWLINGDFNLIYEARDKNNLNLNRRLMGRFRSALDTTGLREIRCN 184
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+R + F + ++ + + + L S S HCPL +
Sbjct: 185 NRRYTWTNERRNPTQ------MSIDKFFCNQAWEGL-FPSASLQAAASATSDHCPLIL 235
>gi|322805921|emb|CBZ03486.1| exodeoxyribonuclease III [Clostridium botulinum H04402 065]
Length = 263
Score = 33.7 bits (75), Expect = 8.3, Method: Composition-based stats.
Identities = 17/120 (14%), Positives = 35/120 (29%), Gaps = 10/120 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
Q L + Q ++ GD+N +N+ G +K+ L R
Sbjct: 151 FKFQANKLIEDLKQ----DETCILMGDYNNDAFLNNKGYDYLINKKLKDIYHLARSKDNG 206
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ I K + L + + + R+ +S H + + +
Sbjct: 207 VTAIGDIDGWKGNTKN----MRLDLILSNKNLKVEYCKVIFNGIRKEIISDHFGVEAKIE 262
>gi|332254455|ref|XP_003276345.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like
[Nomascus leucogenys]
Length = 421
Score = 33.7 bits (75), Expect = 8.3, Method: Composition-based stats.
Identities = 9/47 (19%), Positives = 15/47 (31%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLI 53
L+ A+ + G +I GD N I D + +
Sbjct: 176 RLLQIRAEALLAAGSHVIILGDLNTAHRPIDHWDAVNLECFEEDPGR 222
>gi|302865816|ref|YP_003834453.1| endonuclease/exonuclease/phosphatase [Micromonospora aurantiaca
ATCC 27029]
gi|302568675|gb|ADL44877.1| Endonuclease/exonuclease/phosphatase [Micromonospora aurantiaca
ATCC 27029]
Length = 327
Score = 33.7 bits (75), Expect = 8.3, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 24/117 (20%), Gaps = 18/117 (15%)
Query: 12 WADQKI-----KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
W DQ+ G V+AGDFN ++ D
Sbjct: 224 WTDQRAQPPATPDGGLSVLAGDFNATLDHAALRDLIATGYTDAADAAGAGFGGTWGPY-- 281
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
ID+ T S H L E G
Sbjct: 282 -----------DGDPIPPVTIDHVLVDRRIAVRAARTYPVPGSDHRALLAELRLPAG 327
>gi|226948935|ref|YP_002804026.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum A2 str. Kyoto]
gi|226842849|gb|ACO85515.1| endonuclease/exonuclease/phosphatase family protein [Clostridium
botulinum A2 str. Kyoto]
Length = 263
Score = 33.7 bits (75), Expect = 8.3, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 10/120 (8%)
Query: 2 LSQQGEWLKKWADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEK 59
L Q L Q++K ++ GD+N +N+ G +K+ L R
Sbjct: 151 LKSQVNKLV----QELKEKETCILMGDYNNDAFLNNKGYDYLINKKLKDIYHLARSKDNG 206
Query: 60 ESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ I K + L + + + R+ +S H + + +
Sbjct: 207 VTAIGDIDGWKGNTKD----MRLDLILSNKNLKVEYCKVIFNGIRKEIISDHFGVEAKIE 262
>gi|42568783|ref|NP_201314.3| BST1 (BRISTLED 1); hydrolase/ inositol or phosphatidylinositol
phosphatase [Arabidopsis thaliana]
gi|51536462|gb|AAU05469.1| At5g65090 [Arabidopsis thaliana]
gi|53793645|gb|AAU93569.1| At5g65090 [Arabidopsis thaliana]
gi|332010617|gb|AED98000.1| inositol-1,4,5 triphosphate 5-phosphatase-like protein [Arabidopsis
thaliana]
Length = 529
Score = 33.7 bits (75), Expect = 8.3, Method: Composition-based stats.
Identities = 15/126 (11%), Positives = 34/126 (26%), Gaps = 22/126 (17%)
Query: 15 QKIKTGIPFVIAGDFN-----------RKINSIG-----DTDDFWQKMDPDGLLIRFPQE 58
++I + GD N + + D + + F +
Sbjct: 365 ERIIDHDRVLWLGDLNYRVALTYEETRVLLEDNDWDTLLERDQLNMERGAGRVFSGFQEG 424
Query: 59 KESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVS------YDQSDLDTRRSKLSTHC 112
+ K +++S Y +K ++ +Q S+ S H
Sbjct: 425 QIFFAPTYKYSQNSDAYAGEMTKSKKKRRTPAWCDRILWKGEGIEQLSYIRGESRFSDHR 484
Query: 113 PLTIEY 118
P+ +
Sbjct: 485 PVCAIF 490
>gi|308504898|ref|XP_003114632.1| hypothetical protein CRE_28560 [Caenorhabditis remanei]
gi|308258814|gb|EFP02767.1| hypothetical protein CRE_28560 [Caenorhabditis remanei]
Length = 351
Score = 33.7 bits (75), Expect = 8.4, Method: Composition-based stats.
Identities = 12/100 (12%), Positives = 24/100 (24%), Gaps = 7/100 (7%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
GD N + + + D + K RN + ++
Sbjct: 254 LFFGGDLN--LRDEEVSRIPNGIL--DAWVSAGSDTKTKFTWDTYRNDNKQGFYNAKMRF 309
Query: 83 KNFLIDNSFSIVSYDQSDLDTRRS---KLSTHCPLTIEYD 119
+ V + RS S H ++ +
Sbjct: 310 DRLYWHGPLNKVQFSLEGRQRIRSCLCFPSDHWAISATFS 349
>gi|260433467|ref|ZP_05787438.1| endonuclease/exonuclease/phosphatase family protein [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417295|gb|EEX10554.1| endonuclease/exonuclease/phosphatase family protein [Silicibacter
lacuscaerulensis ITI-1157]
Length = 234
Score = 33.7 bits (75), Expect = 8.4, Method: Composition-based stats.
Identities = 15/118 (12%), Positives = 29/118 (24%), Gaps = 21/118 (17%)
Query: 3 SQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKEST 62
+Q + L D + +P V AGDFN ++ PD + +
Sbjct: 136 RRQ-QILHLRRDGRALDRMPTVWAGDFNEWS-----RQPILDRLAPDMRFLPPVPSFPA- 188
Query: 63 CNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ +++ S H P+ +
Sbjct: 189 -------------AQPLGALDRIALGGGLEALAHGVHGE-RPAHIASDHLPVWADLRL 232
>gi|255956321|ref|XP_002568913.1| Pc21g19220 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590624|emb|CAP96819.1| Pc21g19220 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 289
Score = 33.7 bits (75), Expect = 8.5, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 26/104 (25%), Gaps = 12/104 (11%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
+AGDFN + N + +D + +
Sbjct: 191 FLAGDFNSEENQEAYQELTRSLLDAYKQIESSRRYGNHITWT-----GFGYEDEPASRID 245
Query: 84 NFLIDNS------FSIVSYDQSDLDTRRSKLS-THCPLTIEYDF 120
L+ + +++ Y LS H + ++
Sbjct: 246 YVLVRPTGAQGQRLAVIGYAVLGNRFDDGVLSSDHRAVIVDLTL 289
>gi|332022825|gb|EGI63098.1| Putative neutral sphingomyelinase [Acromyrmex echinatior]
Length = 391
Score = 33.7 bits (75), Expect = 8.5, Method: Composition-based stats.
Identities = 11/124 (8%), Positives = 27/124 (21%), Gaps = 8/124 (6%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDD----FWQKMDPDGLLIRFPQEKE 60
Q ++ + AGD N + + PD E
Sbjct: 153 QAFDTAQFVKMTSGGVDAVIFAGDLNTEPQDLAYRIIRGVSGLADTCPDSQSHIGTNECA 212
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDN-SFSIVSYDQ---SDLDTRRSKLSTHCPLTI 116
+ + + + + ++ + + + S H +
Sbjct: 213 NNSYTSSKLARTQPNGKRIDHIMYLGSNTVKVEVTNFGHPLPNRVPYKNFSYSDHEAVMA 272
Query: 117 EYDF 120
F
Sbjct: 273 TLKF 276
>gi|331696507|ref|YP_004332746.1| endonuclease/exonuclease/phosphatase [Pseudonocardia dioxanivorans
CB1190]
gi|326951196|gb|AEA24893.1| Endonuclease/exonuclease/phosphatase [Pseudonocardia dioxanivorans
CB1190]
Length = 350
Score = 33.7 bits (75), Expect = 8.5, Method: Composition-based stats.
Identities = 12/113 (10%), Positives = 21/113 (18%), Gaps = 16/113 (14%)
Query: 11 KWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNK 70
P V+AGD N ++ + + +
Sbjct: 242 ARLATWCAGPAPTVVAGDLNATLDHSVLREAT-RGCGDAAVQRGQGLTPTWGPW------ 294
Query: 71 SSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
+ + L S L S H + G
Sbjct: 295 ----GRTLGPQIDHVLATAGIEAESVRFLTLP-----GSDHRAVLARLALPTG 338
>gi|118462542|ref|YP_883226.1| endonuclease/exonuclease/phosphatase [Mycobacterium avium 104]
gi|118163829|gb|ABK64726.1| endonuclease/exonuclease/phosphatase [Mycobacterium avium 104]
Length = 252
Score = 33.7 bits (75), Expect = 8.5, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 26/113 (23%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
L++ P ++ GD N ++ +
Sbjct: 164 RQLRRLIRDLRGLPGPRLLTGDLNMTPQTVRRWSGMRALGNAK-------------TFPA 210
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
LD+ + D + Q+DL +S H PL ++
Sbjct: 211 DNPNRQLDHILTDDRRLRC---------AAVQADLMP----ISDHRPLVVDLQ 250
>gi|88799861|ref|ZP_01115434.1| hypothetical protein MED297_03025 [Reinekea sp. MED297]
gi|88777441|gb|EAR08643.1| hypothetical protein MED297_03025 [Reinekea sp. MED297]
Length = 1679
Score = 33.7 bits (75), Expect = 8.5, Method: Composition-based stats.
Identities = 17/116 (14%), Positives = 28/116 (24%), Gaps = 12/116 (10%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVI 78
FVI GD N TDD + + Q +
Sbjct: 1564 ERHHFVIMGDLNASPVEGDATDDPIGLLMASPYVNGDVQPTSQGGVDNDPANENAPAHTA 1623
Query: 79 DRDNKNFLIDNSFSIVSYDQSDLDTRR------------SKLSTHCPLTIEYDFEK 122
D + + +QS + K S H + ++ F +
Sbjct: 1624 DWKMRADYVLPGTWGNKVEQSGVYWPGIADVNHRLVGPGVKSSDHRLVWMDLTFTQ 1679
>gi|302772268|ref|XP_002969552.1| hypothetical protein SELMODRAFT_91806 [Selaginella moellendorffii]
gi|300163028|gb|EFJ29640.1| hypothetical protein SELMODRAFT_91806 [Selaginella moellendorffii]
Length = 351
Score = 33.7 bits (75), Expect = 8.6, Method: Composition-based stats.
Identities = 13/128 (10%), Positives = 34/128 (26%), Gaps = 22/128 (17%)
Query: 13 ADQKIKTGIPFVIAGDFN--RKINSIG----DTDDFWQKMDPDGLLIRFPQEKESTCNVI 66
Q I + GD N ++S + + + L +
Sbjct: 215 LPQTILEHERIIWLGDLNYRVALSSDETMRLIENQDYSSLLAKDQLKAQQGKGRVFEGWK 274
Query: 67 KRNKSSLDYFVIDRDNKNFLIDNS----------------FSIVSYDQSDLDTRRSKLST 110
+ + + D+ + ++ + + DQ ++S
Sbjct: 275 EGHIKFAPTYKYIPDSDAYTMNGASANGRTRVPAWCDRILWLGKGLDQIAYLRSEYRISD 334
Query: 111 HCPLTIEY 118
H P++ +
Sbjct: 335 HRPVSAVF 342
>gi|242071311|ref|XP_002450932.1| hypothetical protein SORBIDRAFT_05g021390 [Sorghum bicolor]
gi|241936775|gb|EES09920.1| hypothetical protein SORBIDRAFT_05g021390 [Sorghum bicolor]
Length = 1093
Score = 33.7 bits (75), Expect = 8.6, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 40/123 (32%), Gaps = 17/123 (13%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKE 60
L++ A + P+ + GDFN ++ ++ +++ + L+
Sbjct: 72 LEELAAVRDTCAGPWAVIGDFNLILDEADKSNGAINRRNLNRFRQTVAELELVDIHLHGR 131
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI--EY 118
+R L+ + + D L S S HCPL + +
Sbjct: 132 RYTWSNERRSP------TMVRLDRALVSLDWEAMHPDCH-LQALSSDASDHCPLLLQTQL 184
Query: 119 DFE 121
F+
Sbjct: 185 SFQ 187
>gi|110678895|ref|YP_681902.1| hypothetical protein RD1_1589 [Roseobacter denitrificans OCh 114]
gi|109455011|gb|ABG31216.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 460
Score = 33.7 bits (75), Expect = 8.7, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 20/136 (14%)
Query: 3 SQQGEWLKKWADQKIKTGIP----FVIAGDFNR---------KINSIGDTDDFWQKMDPD 49
++ E + A +++K + GDFN + + G K P
Sbjct: 306 ARLTEAIGNRASKEMKKNPDNAMVTAVLGDFNIISPEHETMQALEANGFEVPDKIKQIPG 365
Query: 50 GLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLID-------NSFSIVSYDQSDLD 102
+ + + KR++ V + +F +++ ++S +
Sbjct: 366 SNVDKSKAYDQIAFWEPKRSRGYAHVKVHGANVFDFFEHVYRLDERDTYQPHRSERSYKN 425
Query: 103 TRRSKLSTHCPLTIEY 118
R K+S H P+ +E
Sbjct: 426 WRTYKMSDHLPMWVEL 441
>gi|242082862|ref|XP_002441856.1| hypothetical protein SORBIDRAFT_08g003575 [Sorghum bicolor]
gi|241942549|gb|EES15694.1| hypothetical protein SORBIDRAFT_08g003575 [Sorghum bicolor]
Length = 1067
Score = 33.7 bits (75), Expect = 8.8, Method: Composition-based stats.
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 15/117 (12%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDF--------WQKMDPDGLLIRFPQEKE 60
L++ + + P+ + GDFN +N ++ +++ + L+
Sbjct: 64 LEELSAIRDACTGPWAVIGDFNLILNEEDKSNGTINRRNLNRFRQTVSELELVDIHMHGR 123
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
+R L+ + + D L S S HCPL ++
Sbjct: 124 RYTWSNERRSP------TLVRLDRALVSLDWEAMHPDCH-LQALSSDASDHCPLLLQ 173
>gi|242057845|ref|XP_002458068.1| hypothetical protein SORBIDRAFT_03g026375 [Sorghum bicolor]
gi|241930043|gb|EES03188.1| hypothetical protein SORBIDRAFT_03g026375 [Sorghum bicolor]
Length = 284
Score = 33.7 bits (75), Expect = 8.9, Method: Composition-based stats.
Identities = 11/104 (10%), Positives = 26/104 (25%), Gaps = 4/104 (3%)
Query: 26 AGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKES----TCNVIKRNKSSLDYFVIDRD 81
GD N ++ M ++ +
Sbjct: 1 MGDMNEIMHPNEKHGPGRPDMRRINTFSEAVKQCGFLNLGYSGPAYTWTNKRFTSTPTFQ 60
Query: 82 NKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKGNV 125
+ + N+ + Y ++ + S H P+ D + N+
Sbjct: 61 RLDRCLANAEWCLHYPRTTVFHLPMLRSDHAPILALLDSRRRNI 104
>gi|218196953|gb|EEC79380.1| hypothetical protein OsI_20292 [Oryza sativa Indica Group]
Length = 390
Score = 33.7 bits (75), Expect = 9.0, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 15/115 (13%)
Query: 13 ADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQ--------EKESTCN 64
+ P+++ GDFN + + + + D + +
Sbjct: 255 VRHEATEASPWMLIGDFNLIRSPDEKNNPSFDHLSADLFNEKINELALLEIPLFDRLFTW 314
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
KR+ +L N +S + L + S H PL
Sbjct: 315 SNKRDTPALTKIDRAFI-------NQVWNLSLPNTSLTSLVRSTSDHVPLKATIQ 362
>gi|146419313|ref|XP_001485619.1| hypothetical protein PGUG_01290 [Meyerozyma guilliermondii ATCC
6260]
Length = 720
Score = 33.7 bits (75), Expect = 9.1, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 33/143 (23%), Gaps = 20/143 (13%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINS-------------------IGDTDD 41
+L + LKK+ VI GDFN +S
Sbjct: 558 LLEELQGVLKKFGHTDDVKNANVVICGDFNSVKDSAVYQLFSSGSVTKHPDLDGRDYGRF 617
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSY-DQSD 100
+ L + N +DY N +Y
Sbjct: 618 TDEGFKHVFKLKSAYDGELPFTNFSPGFTEVIDYIWYTPGNLRVKGLLGKIDDNYLKNCI 677
Query: 101 LDTRRSKLSTHCPLTIEYDFEKG 123
S H + ++ +KG
Sbjct: 678 GFPDAHFPSDHIAIVTKFQIKKG 700
>gi|34498730|ref|NP_902945.1| sphingomyelinase/beta-hemolysin [Chromobacterium violaceum ATCC
12472]
gi|34104581|gb|AAQ60939.1| probable sphingomyelinase/beta-hemolysin [Chromobacterium violaceum
ATCC 12472]
Length = 510
Score = 33.7 bits (75), Expect = 9.1, Method: Composition-based stats.
Identities = 12/134 (8%), Positives = 26/134 (19%), Gaps = 21/134 (15%)
Query: 4 QQGEW--LKKWAD-QKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+Q + + W + + ++AGD N + +
Sbjct: 183 RQAQLREIAAWVQSRHLPVEETVIVAGDMNIDRYKSAEYRAMLDILQAGEPRYAGMPHSF 242
Query: 61 STCNVI----KRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL-------- 108
T + D + D + +
Sbjct: 243 DTAGNGIALERYGARGGDAPEYLDYILTLKGHRQPAAWHNQALDAPSPQWTAQSAVAKQT 302
Query: 109 ------STHCPLTI 116
S H P+
Sbjct: 303 YAYADFSDHYPVQA 316
>gi|302497149|ref|XP_003010575.1| hypothetical protein ARB_03276 [Arthroderma benhamiae CBS 112371]
gi|291174118|gb|EFE29935.1| hypothetical protein ARB_03276 [Arthroderma benhamiae CBS 112371]
Length = 350
Score = 33.7 bits (75), Expect = 9.2, Method: Composition-based stats.
Identities = 12/125 (9%), Positives = 30/125 (24%), Gaps = 8/125 (6%)
Query: 4 QQGEWLKKWADQKIKTGIPF---VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + + + + +AGDFN + + + P +
Sbjct: 226 ESAKLILSLIQKYLARHPEVKGNFLAGDFNSAESQEAYREFTKPGSSIVDTYKKVPAAQH 285
Query: 61 -----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLT 115
+ + K S +V+ + + R S H +
Sbjct: 286 YGDEITFTGFDGKTKGSRIDYVMVGPQSSSASIPFAVNGYAVMPNRFDNRIYNSDHRAVV 345
Query: 116 IEYDF 120
+
Sbjct: 346 ADVTL 350
>gi|260777923|ref|ZP_05886816.1| phosphotransferase system [Vibrio coralliilyticus ATCC BAA-450]
gi|260605936|gb|EEX32221.1| phosphotransferase system [Vibrio coralliilyticus ATCC BAA-450]
Length = 645
Score = 33.7 bits (75), Expect = 9.2, Method: Composition-based stats.
Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 18/123 (14%)
Query: 13 ADQKIKTGIPFVIAGDFN--RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN------ 64
++ + GIP +I GDFN +++ +T+ F + +
Sbjct: 523 IEKDSEQGIPVIIGGDFNTLSYVDTTAETNIFGRGNIDLPTMRVADSHNYVDSYREVNPD 582
Query: 65 --------VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
K + + S D + S H +
Sbjct: 583 VLHNKCITWTPFFKGNS-GAGRIDFILYKGDNLSAEESYCLLDDGHSEMH-PSDHGAVVT 640
Query: 117 EYD 119
+
Sbjct: 641 RFS 643
>gi|242069075|ref|XP_002449814.1| hypothetical protein SORBIDRAFT_05g023830 [Sorghum bicolor]
gi|241935657|gb|EES08802.1| hypothetical protein SORBIDRAFT_05g023830 [Sorghum bicolor]
Length = 325
Score = 33.7 bits (75), Expect = 9.2, Method: Composition-based stats.
Identities = 14/121 (11%), Positives = 34/121 (28%), Gaps = 16/121 (13%)
Query: 6 GEWLKKWADQK-IKTGIPFVIAGDFNRKINSIGDTDD--------FWQKMDPDGLLIRFP 56
+ ++ +P ++ GDFN + + + + + L
Sbjct: 81 ADAFLDELKAVCQESPLPVILGGDFNLIREANDKNSENVNMGLINIFNEFIGEMQLRELK 140
Query: 57 QEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
+ + K+N L + N+ + S S H P+ +
Sbjct: 141 RSGQRYTWTNKQNNPILVNLDRVLFSVNWEDH-------FPLSTSWGLTRVGSDHMPILV 193
Query: 117 E 117
+
Sbjct: 194 D 194
>gi|242034417|ref|XP_002464603.1| hypothetical protein SORBIDRAFT_01g021700 [Sorghum bicolor]
gi|241918457|gb|EER91601.1| hypothetical protein SORBIDRAFT_01g021700 [Sorghum bicolor]
Length = 588
Score = 33.7 bits (75), Expect = 9.2, Method: Composition-based stats.
Identities = 11/123 (8%), Positives = 24/123 (19%), Gaps = 22/123 (17%)
Query: 15 QKIKTGIPFVIAGDFN--RKINSIGDTDDF----WQKMDP----------------DGLL 52
+ I + GD N ++ W+ +
Sbjct: 415 ETILEHDRIIWLGDLNYRIALSYRSVKALVEMRNWKALLEKDQLTREQRGGRVFAGWNEG 474
Query: 53 IRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHC 112
+ N + + + + Q S+ S H
Sbjct: 475 RIYFPPTYKYSNNSDKYAGDDMNQKEKKRTPAWCDRILWYGRGLSQLSYVRGESRFSDHR 534
Query: 113 PLT 115
P+
Sbjct: 535 PVY 537
>gi|4432866|gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1750
Score = 33.7 bits (75), Expect = 9.2, Method: Composition-based stats.
Identities = 11/105 (10%), Positives = 31/105 (29%), Gaps = 3/105 (2%)
Query: 18 KTGIPFVIAGDFN-RKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS--LD 74
+++ GDFN N+ ++ S
Sbjct: 507 NRNAEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGER 566
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
+ + + + NS ++ ++++ S H P+ + ++
Sbjct: 567 HTHTVKCCLDRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVHFN 611
>gi|328958120|ref|YP_004375506.1| endonuclease/exonuclease/phosphatase [Carnobacterium sp. 17-4]
gi|328674444|gb|AEB30490.1| endonuclease/exonuclease/phosphatase [Carnobacterium sp. 17-4]
Length = 278
Score = 33.7 bits (75), Expect = 9.3, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 3/98 (3%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR 80
P + GDFN N T++ + + D EK +++N
Sbjct: 175 EPIYLMGDFN---NPAQMTNEGYDLVTRDWFDTFHLAEKRDKGYTVEKNIDGWAENNEKL 231
Query: 81 DNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEY 118
++ F + S +S H ++I+
Sbjct: 232 RIDFIFTNHPFEVDSSKVFFNGKNNQIISDHYGVSIKL 269
>gi|297813405|ref|XP_002874586.1| hypothetical protein ARALYDRAFT_352044 [Arabidopsis lyrata subsp.
lyrata]
gi|297320423|gb|EFH50845.1| hypothetical protein ARALYDRAFT_352044 [Arabidopsis lyrata subsp.
lyrata]
Length = 600
Score = 33.7 bits (75), Expect = 9.3, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 29/128 (22%), Gaps = 22/128 (17%)
Query: 12 WADQKIKTGIPFVIAGDFNR--------KINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+ I+ + GD N I D + + D L+ Q +
Sbjct: 442 RLPRSIRDHENIIWLGDLNYRINLSYEKAHELIARKDWK-RLAEKDQLVREMKQGRVFEG 500
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDN-SFSIVSYDQSDLDTRRS------------KLST 110
Y K D S + KLS
Sbjct: 501 WSEGTLDFPPTYKYEIDSEKYGGNDPKSGKRTPAWCDRIIWYGKGMKLMSYRRSEIKLSD 560
Query: 111 HCPLTIEY 118
H P+T +
Sbjct: 561 HRPVTATF 568
>gi|303324261|ref|XP_003072118.1| Endonuclease/Exonuclease/phosphatase family protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240111828|gb|EER29973.1| Endonuclease/Exonuclease/phosphatase family protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 343
Score = 33.7 bits (75), Expect = 9.3, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 34/122 (27%), Gaps = 14/122 (11%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q + + + ++AGDFN + + D + + +
Sbjct: 225 RQLSIIASYLRATGRG----LVAGDFNPVL---PEDDSIINENNLVDMWTELHPNDPGFT 277
Query: 64 NVIKRNKSSLDYFVIDRDNKNFLIDN-------SFSIVSYDQSDLDTRRSKLSTHCPLTI 116
I ++ + + + ++ + R K S HC L
Sbjct: 278 WGIDGKQAYPANRLDKVAKLGLKTHEIEVIPPGTCTYAYAAENRPEEREHKWSDHCGLKC 337
Query: 117 EY 118
+
Sbjct: 338 SF 339
>gi|225423450|ref|XP_002273870.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 989
Score = 33.7 bits (75), Expect = 9.3, Method: Composition-based stats.
Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 11/104 (10%)
Query: 20 GIPFVIAGDFNRKINSIG------DTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSL 73
P+ +AGDFN + + + L
Sbjct: 92 NGPWCVAGDFNAIMRPDESSRGGSLNSIMRRFAEVIEELELKDLPMVGGPFTW---TGGT 148
Query: 74 DYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIE 117
D FL++ + + + +S H P+ ++
Sbjct: 149 DNQ-SFSRLDRFLVNEEWDSH-FGDARQFLLPRPMSDHFPILMD 190
>gi|190345324|gb|EDK37192.2| hypothetical protein PGUG_01290 [Meyerozyma guilliermondii ATCC
6260]
Length = 720
Score = 33.7 bits (75), Expect = 9.3, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 33/143 (23%), Gaps = 20/143 (13%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINS-------------------IGDTDD 41
+L + LKK+ VI GDFN +S
Sbjct: 558 LLEELQGVLKKFGHTDDVKNANVVICGDFNSVKDSAVYQLFSSGSVTKHPDLDGRDYGRF 617
Query: 42 FWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDR-DNKNFLIDNSFSIVSYDQSD 100
+ L + N +DY + + +
Sbjct: 618 TDEGFKHVFKLKSAYDGELPFTNFSPGFTEVIDYIWYTPGNLRVKGLLGKIDDNYLKNCI 677
Query: 101 LDTRRSKLSTHCPLTIEYDFEKG 123
S H + ++ +KG
Sbjct: 678 GFPDAHFPSDHIAIVTKFQIKKG 700
>gi|126347700|emb|CAJ89415.1| putative endonuclease/exonuclease/phosphatase family protein
[Streptomyces ambofaciens ATCC 23877]
Length = 305
Score = 33.7 bits (75), Expect = 9.3, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 30/116 (25%), Gaps = 20/116 (17%)
Query: 5 QGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCN 64
Q L ++ V+ GD N ++ + W + +C
Sbjct: 209 QAAVLA----TEVARHDRAVVLGDLNAVPDAPELSR-LWALAVDADPQCHPTRTAAGSCQ 263
Query: 65 VIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+S DY I + V S+ S H L + D
Sbjct: 264 ATTDWQSKFDYVF------LRGITPAGHRVHA---------SRYSDHHQLYADLDL 304
>gi|121716960|ref|XP_001275963.1| endonuclease/exonuclease/phosphatase family protein [Aspergillus
clavatus NRRL 1]
gi|119404120|gb|EAW14537.1| endonuclease/exonuclease/phosphatase family protein [Aspergillus
clavatus NRRL 1]
Length = 344
Score = 33.7 bits (75), Expect = 9.4, Method: Composition-based stats.
Identities = 10/107 (9%), Positives = 20/107 (18%), Gaps = 11/107 (10%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDN 82
+ GDFN + + +
Sbjct: 238 VFLTGDFNSQETQEAYGVLTGAESSLADTAKVLEPALHYGDHFTWT--GFGYEGQDPTRI 295
Query: 83 KNFLIDN--------SFSIVSYDQSDLDTR-RSKLSTHCPLTIEYDF 120
L+ S+ + Y LS H + ++
Sbjct: 296 DYILLGPGKQKEEEQSWRVDGYAVLANRFDSGVFLSDHRAVVVDVTL 342
>gi|222618572|gb|EEE54704.1| hypothetical protein OsJ_02025 [Oryza sativa Japonica Group]
Length = 470
Score = 33.7 bits (75), Expect = 9.4, Method: Composition-based stats.
Identities = 14/104 (13%), Positives = 27/104 (25%), Gaps = 8/104 (7%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQE------KESTCNVIKRNKSS 72
+ +++ GDFN + S + N
Sbjct: 337 SNALWLMMGDFNETLWSFEQFSARRRPEKQMMDFREVLSHCDLHDIGFLGRPWTYDNGQR 396
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTI 116
D + + S+S + L + S HCP+ +
Sbjct: 397 GD-RNVKVRLDRAVASPSWSNHFSEAKLLHLVSPR-SDHCPILL 438
>gi|90411491|ref|ZP_01219502.1| hypothetical protein P3TCK_12701 [Photobacterium profundum 3TCK]
gi|90327704|gb|EAS44047.1| hypothetical protein P3TCK_12701 [Photobacterium profundum 3TCK]
Length = 314
Score = 33.7 bits (75), Expect = 9.4, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 27/122 (22%), Gaps = 20/122 (16%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+L ++ + + ++ GDFN S F +
Sbjct: 213 LLKTLNHLVEDYIGTDNASSAQLIV-GDFNLSSTSERYQTLFSG-----------FNSQP 260
Query: 61 STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+ Y I D+ + S H P+
Sbjct: 261 VSSWPNWS--GLRQYLTISIDHLWAHYPLEICKRKALINIA------GSDHRPIVTYLTM 312
Query: 121 EK 122
+K
Sbjct: 313 QK 314
>gi|307727145|ref|YP_003910358.1| endonuclease/exonuclease/phosphatase [Burkholderia sp. CCGE1003]
gi|307587670|gb|ADN61067.1| Endonuclease/exonuclease/phosphatase [Burkholderia sp. CCGE1003]
Length = 290
Score = 33.7 bits (75), Expect = 9.7, Method: Composition-based stats.
Identities = 12/96 (12%), Positives = 21/96 (21%), Gaps = 1/96 (1%)
Query: 24 VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK 83
++ GDFN + + D
Sbjct: 196 IVCGDFNSAFQGAAYRK-MLEPIADAPAFADAWTRAHGDSAREPTVGLYDKEQWPDGPFA 254
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYD 119
I + + S S+ S H P+ +E
Sbjct: 255 CDFIFVTEDLAPRVASCEVDPHSRSSDHQPMWLELR 290
>gi|149175989|ref|ZP_01854606.1| deoxyribonuclease gamma (precursor) [Planctomyces maris DSM 8797]
gi|148845143|gb|EDL59489.1| deoxyribonuclease gamma (precursor) [Planctomyces maris DSM 8797]
Length = 343
Score = 33.7 bits (75), Expect = 9.7, Method: Composition-based stats.
Identities = 11/106 (10%), Positives = 31/106 (29%), Gaps = 10/106 (9%)
Query: 18 KTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFV 77
++ GD N D ++ ++ + + +++K +
Sbjct: 234 SQEDDVILLGDLN-------VDDQHLGELGQVSDIMWTVSKTPTNT---RKSKQYDNILF 283
Query: 78 IDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEKG 123
R ++ F + + +S H P+ E+ +
Sbjct: 284 SRRRSQEFTGKSGVYDFRTRFKLSEKEALTVSDHLPIWAEFHISEN 329
>gi|281207492|gb|EFA81675.1| endonuclease/exonuclease/phosphatase domain-containing protein
[Polysphondylium pallidum PN500]
Length = 526
Score = 33.7 bits (75), Expect = 9.8, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 27/109 (24%), Gaps = 7/109 (6%)
Query: 17 IKTGIPFVIAGDFNRKINSIGDT--DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLD 74
+ P VI GD+N T D +++ L F + K ++
Sbjct: 400 LPRDTPLVICGDYNNGPTQKAYTLMDYGQYELNGYTLSHSFKMSSAYSHRPDGEPKYTIR 459
Query: 75 YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRS-----KLSTHCPLTIEY 118
+ + + R S H + +
Sbjct: 460 TNHFTGSIDQIWMSEKLRVSKLLEIGDHYPRQLPSLTDPSDHIMMLADL 508
>gi|291303122|ref|YP_003514400.1| endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
gi|290572342|gb|ADD45307.1| Endonuclease/exonuclease/phosphatase [Stackebrandtia nassauensis
DSM 44728]
Length = 310
Score = 33.7 bits (75), Expect = 9.8, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 33/121 (27%), Gaps = 12/121 (9%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINS---IGDTDDFWQKMDPDGLLIRFPQEKE 60
QQ + ++ + + V+ GDFN S +D+F + E
Sbjct: 188 QQVKNVRDYV---WPSRANLVLGGDFNLFPGSSTLKPISDNFHECDGRSYGSGDKVDETT 244
Query: 61 STCNVIKRNKSS--LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKL----STHCPL 114
D+ + + + S + + S S H PL
Sbjct: 245 HHAWTGDDTHVYRKRDHIFASKPDSGTNFGSCDSRTDLMDTTENEPDSGPPSGYSDHAPL 304
Query: 115 T 115
Sbjct: 305 L 305
>gi|326473513|gb|EGD97522.1| endonuclease/exonuclease/phosphatase [Trichophyton tonsurans CBS
112818]
Length = 292
Score = 33.7 bits (75), Expect = 9.9, Method: Composition-based stats.
Identities = 14/126 (11%), Positives = 33/126 (26%), Gaps = 9/126 (7%)
Query: 4 QQGEWLKKWADQKIKTGIPF---VIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKE 60
+ + + + + +AGDFN + + + P +
Sbjct: 167 ESAKLILSLIQKYLARYPEVKGNFLAGDFNSIESQEAYREFTKPGSSIVDTYKKVPAAQH 226
Query: 61 -----STCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQ-SDLDTRRSKLSTHCPL 114
+ + K S +V+ F++ Y + R S H +
Sbjct: 227 YGDEITFTGFDGKTKGSRIDYVMVGPQSCSSASIPFTVNGYAVMPNRFDNRIYNSDHRAV 286
Query: 115 TIEYDF 120
+
Sbjct: 287 VADITL 292
>gi|242081483|ref|XP_002445510.1| hypothetical protein SORBIDRAFT_07g020750 [Sorghum bicolor]
gi|241941860|gb|EES15005.1| hypothetical protein SORBIDRAFT_07g020750 [Sorghum bicolor]
Length = 409
Score = 33.7 bits (75), Expect = 9.9, Method: Composition-based stats.
Identities = 6/81 (7%), Positives = 16/81 (19%), Gaps = 1/81 (1%)
Query: 41 DFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQSD 100
+ + + + Q+
Sbjct: 319 WHEGLVTFAPTYKYHRNSDKLYWWADGGADRGGHRNSKQHRAPAWCDRILWRGKGMMQTR 378
Query: 101 LDT-RRSKLSTHCPLTIEYDF 120
++ +LS H P+ + F
Sbjct: 379 YESCGGYRLSDHRPVRAVFHF 399
>gi|254450713|ref|ZP_05064150.1| endonuclease/exonuclease/phosphatase family [Octadecabacter
antarcticus 238]
gi|198265119|gb|EDY89389.1| endonuclease/exonuclease/phosphatase family [Octadecabacter
antarcticus 238]
Length = 348
Score = 33.7 bits (75), Expect = 9.9, Method: Composition-based stats.
Identities = 15/138 (10%), Positives = 35/138 (25%), Gaps = 28/138 (20%)
Query: 8 WLKKWADQKIKTG----IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
L +WAD++ + ++ GD N + ++ + G+ +
Sbjct: 211 ALARWADKRSQKDTTYDQDIILLGDMNVP--DMTLKQASYRALIEYGMQPLKYASRVGGS 268
Query: 64 ----NVIKRNKSSLDYFVIDRDNKN-------FLIDNSFSIVSYDQSDLDTRRSK----- 107
+ + R + + + +
Sbjct: 269 NLSGKNTYDQMAFAPGRLQTRIIDYDVFDFDNAVFAGLWDKLDTTADPDPNPDKRVSEFR 328
Query: 108 ------LSTHCPLTIEYD 119
LS H PL ++ D
Sbjct: 329 SHVNYHLSDHRPLWVQLD 346
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.310 0.121 0.339
Lambda K H
0.267 0.0368 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 735,512,556
Number of Sequences: 14124377
Number of extensions: 12092140
Number of successful extensions: 91206
Number of sequences better than 10.0: 7880
Number of HSP's better than 10.0 without gapping: 2710
Number of HSP's successfully gapped in prelim test: 5170
Number of HSP's that attempted gapping in prelim test: 81115
Number of HSP's gapped (non-prelim): 8212
length of query: 125
length of database: 4,842,793,630
effective HSP length: 91
effective length of query: 34
effective length of database: 3,557,475,323
effective search space: 120954160982
effective search space used: 120954160982
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 75 (33.7 bits)