RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780995|ref|YP_003065408.1|
Endonuclease/exonuclease/phosphatase [Candidatus Liberibacter
asiaticus str. psy62]
(125 letters)
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse
I, microbatch; 1.73A {Escherichia coli} (A:)
Length = 262
Score = 29.8 bits (67), Expect = 0.12
Identities = 13/68 (19%), Positives = 21/68 (30%), Gaps = 21/68 (30%)
Query: 21 IPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSS------LD 74
+ ++I GDFNR +P L + +I ++ LD
Sbjct: 178 LNWMILGDFNR---------------EPADLEMNLTVPVRRASEIISPAAATQTSQRTLD 222
Query: 75 YFVIDRDN 82
Y V
Sbjct: 223 YAVAGNSV 230
>3g6s_A Putative endonuclease/exonuclease/phosphatase family
protein; alpha-beta protein, structural genomics, PSI-2;
2.50A {Bacteroides vulgatus atcc 8482} (A:)
Length = 267
Score = 28.7 bits (62), Expect = 0.29
Identities = 18/120 (15%), Positives = 33/120 (27%), Gaps = 6/120 (5%)
Query: 4 QQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFWQKMDPDGLLIRFPQEKESTC 63
+Q L ++I P V+ GDFN S + +
Sbjct: 148 RQSALLIIRKIKEIVGERPAVVTGDFNVTDASDAYETITTNEFVXKDAYKTAARVTGVDY 207
Query: 64 NVIKRNKSSLD-YFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFEK 122
+ + ID + + S + + + LS H P + + E
Sbjct: 208 TFHDFARIPAEDCEKIDF----IFVTPQVLVKSC-EIPAEVPEALLSDHNPQLADLELEH 262
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin,
hydrolase; 1.90A {Listeria ivanovii} (A:)
Length = 301
Score = 27.3 bits (58), Expect = 0.83
Identities = 17/133 (12%), Positives = 31/133 (23%), Gaps = 13/133 (9%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTDDFW--QKMDPDGLLIRFPQE 58
Q E A + I I GD N + D P +
Sbjct: 168 RAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYHDMLKLLNVSSPANFNGQMATW 227
Query: 59 KESTCNVIKRNKSSLDYFVIDRD--------NKNFLIDNSFSIVSYDQSDLDTRR---SK 107
+T +++K + +D ++ + +
Sbjct: 228 DPTTNSMLKESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQD 287
Query: 108 LSTHCPLTIEYDF 120
S H P+ D
Sbjct: 288 FSDHYPVVGFTDN 300
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} (A:1-67)
Length = 67
Score = 26.9 bits (60), Expect = 0.94
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNRKI 33
+ +A++K+K G+ + + D+
Sbjct: 6 VGSFAEKKLKRGVQLLSSRDYPNLN 30
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase;
HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
(A:1-98,A:235-275)
Length = 139
Score = 26.9 bits (59), Expect = 1.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 84 NFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDFE 121
+ ++ NS +VS ++ L S H P+TI DFE
Sbjct: 3 DLILINSLPLVSDAETSLTCIASGWRPHEPITIGRDFE 40
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial,
virulence, DNA damage, genotoxin, cytotoxins, cell
cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi}
(B:106-228)
Length = 123
Score = 26.3 bits (58), Expect = 1.3
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 9/65 (13%)
Query: 19 TGIPFVIAGDFNRKINSIGDTDDFWQKMDPD-GLLIRFPQEKESTCNVIKRNKSSLDYFV 77
+++ GDFNR ++ +P E T R+ + LDY +
Sbjct: 63 RVYSWMVVGDFNRAPANLEVALR----QEPAVSENTIIIAPTEPT----HRSGNILDYAI 114
Query: 78 IDRDN 82
+ +
Sbjct: 115 LHDAH 119
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
(A:1-71)
Length = 71
Score = 26.2 bits (58), Expect = 1.7
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 9 LKKWADQKIKTGIPFVIAGDFNR 31
L K ++ + P+V +G R
Sbjct: 7 LAKGREKSLLRRHPWVFSGAVAR 29
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein,
enterococcus faecalis V583, PSI-2, MCSG, structural
genomics; 1.60A {Enterococcus faecalis} (A:)
Length = 257
Score = 25.6 bits (54), Expect = 2.6
Identities = 6/17 (35%), Positives = 6/17 (35%)
Query: 107 KLSTHCPLTIEYDFEKG 123
S H PL E E
Sbjct: 238 FPSDHFPLEAEVAGENL 254
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral
protein; HET: DNA; NMR {African swine fever virus BA71V}
(A:1-119)
Length = 119
Score = 24.8 bits (54), Expect = 3.7
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 9/80 (11%)
Query: 23 FVIAGDFNRKINSIGDTDDFWQKMDP---DGLLIRFPQEKESTCNVIK-RNKSSLDYFVI 78
V G R+ + D D + +L + S + K L I
Sbjct: 34 IVAVGSLRREEKMLNDVDLLIIVPEKKLLKHVLPNIRIKGLSFSVKVCGERKCVL---FI 90
Query: 79 DRDNKNFLIDNSFSIVSYDQ 98
+ + K + +D ++
Sbjct: 91 EWEKKTYQLD--LFTALAEE 108
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, hydrolase; 1.40A {Bacillus cereus}
(A:)
Length = 306
Score = 24.7 bits (51), Expect = 4.6
Identities = 16/139 (11%), Positives = 32/139 (23%), Gaps = 18/139 (12%)
Query: 1 MLSQQGEWLKKWADQKIKTGIPFVIAGDFNRKINSI------------GDTDDFWQKMDP 48
+Q E ++ I +I GD N + +
Sbjct: 168 RTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTG 227
Query: 49 DGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNK------NFLIDNSFSIVSYDQSDLD 102
+ N LDY + +D+ N ++ +
Sbjct: 228 HTATWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQK 287
Query: 103 TRRSKLSTHCPLTIEYDFE 121
+ S H P+ +
Sbjct: 288 YTYNDYSDHYPVEATISMK 306
>3g7p_A Nitrogen fixation protein; YP_002425942.1, NIFX-associated
protein of unknown function, DUF269, structural
genomics; HET: SO4 PG6; 2.00A {Acidithiobacillus
ferrooxidans ATCC23270} (A:)
Length = 156
Score = 24.2 bits (53), Expect = 5.5
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 6 GEWLKKWADQKIKTGIPFVIAGDFNRKINSIGDTD 40
G W +K +D ++ P+V+ + R I IGD D
Sbjct: 33 GTW-EKKSDXELLA--PYVLDKEQRRAIPIIGDPD 64
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair
phosphodiesterase, DNA repair, exonuclease,
endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
(A:)
Length = 256
Score = 24.1 bits (50), Expect = 6.0
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Query: 73 LDYFVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLSTHCPLTIEYDF 120
+D+ ++ ++ + S H P+T E+D+
Sbjct: 216 IDHILVSPAMAA-------ALKDVRVDLETRALERPSDHAPVTAEFDW 256
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding
protein; 2.40A {Bombyx mori} (A:)
Length = 245
Score = 24.3 bits (51), Expect = 6.2
Identities = 3/19 (15%), Positives = 5/19 (26%)
Query: 104 RRSKLSTHCPLTIEYDFEK 122
S H + +K
Sbjct: 227 EDLVSSDHNGMVFNIRLQK 245
>3bp1_A NADPH-dependent 7-cyano-7-deazaguanine reductase; alpha-beta
structure, structural genomics, PSI-2; HET: MSE GUN;
1.53A {Vibrio cholerae o1 biovar eltor str} (A:)
Length = 290
Score = 24.1 bits (52), Expect = 6.3
Identities = 9/81 (11%), Positives = 23/81 (28%)
Query: 40 DDFWQKMDPDGLLIRFPQEKESTCNVIKRNKSSLDYFVIDRDNKNFLIDNSFSIVSYDQS 99
D + + + ++ +D I+ N F ++
Sbjct: 125 HDLSACAGETVTVNVKSLNEYTAEPIVTXQGECIDDQDIEIANYEFDDALLQGAAQGEEV 184
Query: 100 DLDTRRSKLSTHCPLTIEYDF 120
L ++C +T + D+
Sbjct: 185 SEVLHSHLLKSNCLITNQPDW 205
>3fb9_A Uncharacterized protein; unknown function, structural
genomics, MCSG, PSI2, protein structure initiative;
1.80A {Streptococcus pneumoniae TIGR4} (A:)
Length = 90
Score = 24.3 bits (53), Expect = 6.3
Identities = 5/34 (14%), Positives = 16/34 (47%)
Query: 76 FVIDRDNKNFLIDNSFSIVSYDQSDLDTRRSKLS 109
F+++ + + + S+ SD+ T ++ +
Sbjct: 54 FIVEFGDVEGDKQVNVYVESFTYSDILTEKNLIH 87
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase;
spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP;
1.80A {Schizosaccharomyces pombe} (A:18-321)
Length = 304
Score = 23.9 bits (50), Expect = 7.5
Identities = 24/136 (17%), Positives = 35/136 (25%), Gaps = 26/136 (19%)
Query: 7 EWLKKWADQKIKTGIPFVIAGDFNRKINSIG-------DTDDFWQKMDPDGLLI------ 53
L+ + I V GDFN +I+ + D L
Sbjct: 169 SGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGK 228
Query: 54 RFPQEKESTCNVIKRNKSSLDYFVIDRDNKN--------FLIDNSFSIVSYDQSDLDTRR 105
FP E K + + D +K+ L SY L
Sbjct: 229 VFPFFSELPITFPPTYKFDIGTDIYDTSDKHRVPAWTDRILYRGELVPHSYQSVPL---- 284
Query: 106 SKLSTHCPLTIEYDFE 121
S H P+ Y+
Sbjct: 285 -YYSDHRPIYATYEAN 299
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.137 0.416
Gapped
Lambda K H
0.267 0.0355 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 984,462
Number of extensions: 40112
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 20
Length of query: 125
Length of database: 4,956,049
Length adjustment: 75
Effective length of query: 50
Effective length of database: 2,420,674
Effective search space: 121033700
Effective search space used: 121033700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (24.1 bits)