Query         gi|254780996|ref|YP_003065409.1| hypothetical protein CLIBASIA_04485 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 109
No_of_seqs    3 out of 5
Neff          1.6 
Searched_HMMs 23785
Date          Tue May 31 23:09:40 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780996.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3mtc_A Type II inositol-1,4,5-  92.1    0.29 1.2E-05   27.9   5.7   60   43-102    88-147 (313)
  2 3nr8_B Phosphatidylinositol-3,  86.4    0.64 2.7E-05   25.9   3.9   60   42-101    89-148 (316)
  3 1i9z_A Synaptojanin, phosphati  81.3     2.7 0.00011   22.3   5.3   59   43-101   111-169 (347)
  4 2xsw_A 72 kDa inositol polypho  71.7     6.1 0.00026   20.2   5.0   59   43-101    96-154 (357)
  5 1mv5_A LMRA, multidrug resista  47.4     3.2 0.00013   21.8  -0.0   56   10-68     36-91  (243)
  6 1zwx_A SMCL, sphingomyelinase-  40.2      22 0.00095   16.8   5.1   32   72-103   125-156 (301)
  7 2ddr_A Sphingomyelin phosphodi  39.6      23 0.00097   16.8   4.6   32   72-103   125-156 (306)
  8 3i41_A Beta-hemolysin; beta to  37.7      25   0.001   16.6   4.7   31   74-104   146-176 (317)
  9 2ixe_A Antigen peptide transpo  36.0     3.5 0.00015   21.6  -1.3   56   10-68     53-108 (271)
 10 2ff7_A Alpha-hemolysin translo  33.4     3.8 0.00016   21.3  -1.4   56   10-68     43-98  (247)
 11 3cyp_B Chemotaxis protein MOTB  28.1      17 0.00071   17.5   1.2   26   63-89     92-117 (138)
 12 2oo4_A Notch 2, neurogenic loc  26.9      30  0.0013   16.1   2.2   23   70-92    167-189 (234)
 13 3ldt_A Outer membrane protein,  25.9      38  0.0016   15.4   2.7   25   62-87    136-160 (169)
 14 1l2t_A Hypothetical ABC transp  24.2     4.8  0.0002   20.8  -2.2   55   10-64     39-94  (235)
 15 1lni_A RNAse SA, guanyl-specif  24.1      29  0.0012   16.2   1.7   35   72-106    59-93  (96)
 16 3dhw_C Methionine import ATP-b  21.8     4.8  0.0002   20.8  -2.6   55    8-62     37-91  (343)
 17 2c4b_A Barnase mcoeeti fusion;  20.1      40  0.0017   15.3   1.8   38   70-108    74-111 (143)
 18 3nh6_A ATP-binding cassette SU  20.0     5.3 0.00022   20.5  -2.7   54   11-67     89-142 (306)
 19 2onk_A Molybdate/tungstate ABC  20.0      20 0.00084   17.1   0.2   48   10-62     32-79  (240)

No 1  
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens}
Probab=92.08  E-value=0.29  Score=27.95  Aligned_cols=60  Identities=18%  Similarity=0.288  Sum_probs=45.5

Q ss_pred             HCEEEEEEEECCHHHHHHHHCCCCCCCCCCHHCCCCEEEEEEEEECCEEEEEEEEEEEEE
Q ss_conf             000124456400011333224787710123000771368999997890899998741013
Q gi|254780996|r   43 SDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSS  102 (109)
Q Consensus        43 ~dihTAIaiRK~~~rvLQ~SYpl~~~~~~~sraGnRraVElL~Eidg~KiWlLdiHLKSf  102 (109)
                      ..+..+|.+|++.........+.....++....|+..+|.+.+++++.++.++++||-+.
T Consensus        88 ~g~~~~vf~r~~~~~~i~~~~~~~~~~g~~~~~~~kg~~~~~~~i~~~~~~~in~hl~~~  147 (313)
T 3mtc_A           88 VGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAH  147 (313)
T ss_dssp             TTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCS
T ss_pred             CEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEEEECCEEEEEEEECCCCC
T ss_conf             316999998166566434566642544788766888519999999999999999626888


No 2  
>3nr8_B Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; structural genomics consortium, SGC, trisphosphate 5-phosphatase 2, SHIP2, INPPL1, SHIP-2; 2.80A {Homo sapiens}
Probab=86.38  E-value=0.64  Score=25.91  Aligned_cols=60  Identities=17%  Similarity=0.247  Sum_probs=42.2

Q ss_pred             HHCEEEEEEEECCHHHHHHHHCCCCCCCCCCHHCCCCEEEEEEEEECCEEEEEEEEEEEE
Q ss_conf             100012445640001133322478771012300077136899999789089999874101
Q gi|254780996|r   42 ESDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKS  101 (109)
Q Consensus        42 ~~dihTAIaiRK~~~rvLQ~SYpl~~~~~~~sraGnRraVElL~Eidg~KiWlLdiHLKS  101 (109)
                      ...+.++|-+|+..+......-.---..|.....||..+|-+-+++++..+.+++.||.+
T Consensus        89 ~~g~~~~vf~r~~~~~~i~~v~~~~~~~G~~~~~~nkg~v~i~~~~~~~~i~~vn~hl~~  148 (316)
T 3nr8_B           89 LWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTS  148 (316)
T ss_dssp             ETTEEEEEEECGGGGGGEEEEEEEEEECC------CCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             CCCEEEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEEECCEEEEEEEECCCC
T ss_conf             232379999616445644431332122388877688733999999899889999965667


No 3  
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=81.29  E-value=2.7  Score=22.25  Aligned_cols=59  Identities=12%  Similarity=0.162  Sum_probs=38.9

Q ss_pred             HCEEEEEEEECCHHHHHHHHCCCCCCCCCCHHCCCCEEEEEEEEECCEEEEEEEEEEEE
Q ss_conf             00012445640001133322478771012300077136899999789089999874101
Q gi|254780996|r   43 SDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKS  101 (109)
Q Consensus        43 ~dihTAIaiRK~~~rvLQ~SYpl~~~~~~~sraGnRraVElL~Eidg~KiWlLdiHLKS  101 (109)
                      ..+..+|-+|++...-...--.--..-+....+||..+|.+-+.+.++.+.+.+.||-+
T Consensus       111 ~g~~l~vf~r~~~~~~i~~v~~~~v~~g~~g~~gnKGaV~i~~~i~~~~l~fvn~HL~a  169 (347)
T 1i9z_A          111 VGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAA  169 (347)
T ss_dssp             TTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             CCEEEEEEEECHHHCCCCCCCEEEEECCCCCCCCCCEEEEEEEEECCEEEEEEECCCCC
T ss_conf             32399999986576257731110898256871278526999999989999999706787


No 4  
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=71.69  E-value=6.1  Score=20.15  Aligned_cols=59  Identities=10%  Similarity=0.157  Sum_probs=39.5

Q ss_pred             HCEEEEEEEECCHHHHHHHHCCCCCCCCCCHHCCCCEEEEEEEEECCEEEEEEEEEEEE
Q ss_conf             00012445640001133322478771012300077136899999789089999874101
Q gi|254780996|r   43 SDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKS  101 (109)
Q Consensus        43 ~dihTAIaiRK~~~rvLQ~SYpl~~~~~~~sraGnRraVElL~Eidg~KiWlLdiHLKS  101 (109)
                      ..|..++-+|+........--.---..|+...+||..+|-+-+.++|+.+.+++.||-.
T Consensus        96 ~gi~l~Vfvr~~~~~~v~~v~~~~v~~G~~g~~gnKG~v~i~~~l~~~~l~fvn~HL~a  154 (357)
T 2xsw_A           96 GVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTS  154 (357)
T ss_dssp             TTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCC
T ss_pred             CCEEEEEEEEHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEEECCEEEEEEEEECCC
T ss_conf             01299999975655226766423672177888788853999999998789999996389


No 5  
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=47.40  E-value=3.2  Score=21.82  Aligned_cols=56  Identities=16%  Similarity=0.159  Sum_probs=42.7

Q ss_pred             ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCCCCC
Q ss_conf             73778872466787523852111123577765100012445640001133322478771
Q gi|254780996|r   10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAP   68 (109)
Q Consensus        10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl~~~   68 (109)
                      -|||||...-..+-|.++.++=.+...|.+...-+.+   .+|+...-|.|..++..++
T Consensus        36 ~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~---~lr~~i~~v~Q~~~lf~~T   91 (243)
T 1mv5_A           36 PSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE---NWRSQIGFVSQDSAIMAGT   91 (243)
T ss_dssp             CTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCS---CCTTTCCEECCSSCCCCEE
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH---HHHHHEEEECCCCCCCCCC
T ss_conf             9987399999999678768974899999995609999---9985148992687357656


No 6  
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=40.19  E-value=22  Score=16.81  Aligned_cols=32  Identities=13%  Similarity=0.209  Sum_probs=26.7

Q ss_pred             CHHCCCCEEEEEEEEECCEEEEEEEEEEEEEE
Q ss_conf             30007713689999978908999987410135
Q gi|254780996|r   72 TPRMGNRKTVELLIEIDDQKVWLLNVHLKSSC  103 (109)
Q Consensus        72 ~sraGnRraVElL~Eidg~KiWlLdiHLKSfC  103 (109)
                      ..+...|..+..-+++.++++.+.++||++..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~  156 (301)
T 1zwx_A          125 ADRLSNKGFAYVKIMKNGKPYHIIGTHTQADD  156 (301)
T ss_dssp             GGGGBCCEEEEEEEEETTEEEEEEEEECCCCC
T ss_pred             CCCCCCCEEEEEEEECCCEEEEEEEECCCCCC
T ss_conf             31013621899999669959999995455678


No 7  
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=39.58  E-value=23  Score=16.76  Aligned_cols=32  Identities=22%  Similarity=0.302  Sum_probs=27.2

Q ss_pred             CHHCCCCEEEEEEEEECCEEEEEEEEEEEEEE
Q ss_conf             30007713689999978908999987410135
Q gi|254780996|r   72 TPRMGNRKTVELLIEIDDQKVWLLNVHLKSSC  103 (109)
Q Consensus        72 ~sraGnRraVElL~Eidg~KiWlLdiHLKSfC  103 (109)
                      ..+..+|..+.+.+...++.+.+.++||++..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~  156 (306)
T 2ddr_A          125 PDNLSNKGFVYTKIKKNDRFVHVIGTHLQAED  156 (306)
T ss_dssp             ---CCCCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred             CCCCCCCEEEEEEEECCCCEEEEEEECCCCCC
T ss_conf             65334523899998369958999996877665


No 8  
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus RN4220} PDB: 3i46_A 3i48_A
Probab=37.67  E-value=25  Score=16.58  Aligned_cols=31  Identities=23%  Similarity=0.220  Sum_probs=25.4

Q ss_pred             HCCCCEEEEEEEEECCEEEEEEEEEEEEEEE
Q ss_conf             0077136899999789089999874101353
Q gi|254780996|r   74 RMGNRKTVELLIEIDDQKVWLLNVHLKSSCV  104 (109)
Q Consensus        74 raGnRraVElL~Eidg~KiWlLdiHLKSfCf  104 (109)
                      +..+|..+...++.+|+.+.+.+.||++.+-
T Consensus       146 ~~~~r~~~~~~~~~~~~~~~v~ntHl~~~~~  176 (317)
T 3i41_A          146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDS  176 (317)
T ss_dssp             GGBCCEEEEEEEEETTEEEEEEEEECCCCCS
T ss_pred             CCCCCCEEEEEEECCCEEEEEEEECCCCCCC
T ss_conf             0147446999996299799999743555677


No 9  
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=36.04  E-value=3.5  Score=21.56  Aligned_cols=56  Identities=16%  Similarity=0.033  Sum_probs=39.4

Q ss_pred             ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCCCCC
Q ss_conf             73778872466787523852111123577765100012445640001133322478771
Q gi|254780996|r   10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAP   68 (109)
Q Consensus        10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl~~~   68 (109)
                      .|||||...-..+-|++...+=.+...|.+..+-+..   .+|+...-|.|.+++..++
T Consensus        53 ~sGsGKSTLl~ll~gl~~p~~G~I~idg~~i~~~~~~---~~r~~i~~v~Q~~~lf~~T  108 (271)
T 2ixe_A           53 PNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHH---YLHTQVAAVGQEPLLFGRS  108 (271)
T ss_dssp             STTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHH---HHHHHEEEECSSCCCCSSB
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH---HHHHHEEEEECCCEECCCC
T ss_conf             9998699999999767758988899999998739999---9974178981256663756


No 10 
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=33.40  E-value=3.8  Score=21.33  Aligned_cols=56  Identities=23%  Similarity=0.140  Sum_probs=39.5

Q ss_pred             ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCCCCC
Q ss_conf             73778872466787523852111123577765100012445640001133322478771
Q gi|254780996|r   10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAP   68 (109)
Q Consensus        10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl~~~   68 (109)
                      -|||||...-..+-|.+.-++=.+...|.|..+-+..   .+|+...-|.|.+++..++
T Consensus        43 ~sGsGKSTLl~ll~gl~~p~~G~I~i~g~di~~~~~~---~lr~~i~~v~Q~~~lf~~T   98 (247)
T 2ff7_A           43 RSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPN---WLRRQVGVVLQDNVLLNRS   98 (247)
T ss_dssp             STTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHH---HHHHHEEEECSSCCCTTSB
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHH---HHHHCEEEEECCCCCCCCC
T ss_conf             9998299999999777748987899999993619989---9972629993688788874


No 11 
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=28.11  E-value=17  Score=17.54  Aligned_cols=26  Identities=27%  Similarity=0.553  Sum_probs=16.3

Q ss_pred             CCCCCCCCCCHHCCCCEEEEEEEEECC
Q ss_conf             478771012300077136899999789
Q gi|254780996|r   63 YPLPAPQEITPRMGNRKTVELLIEIDD   89 (109)
Q Consensus        63 Ypl~~~~~~~sraGnRraVElL~Eidg   89 (109)
                      .|+........|+-||| ||+.|..+.
T Consensus        92 ~P~~~n~~~~~~a~NRR-VEI~i~~~~  117 (138)
T 3cyp_B           92 NPIAPNDSLENRMKNNR-VEIFFSTDA  117 (138)
T ss_dssp             SCSSCTTSHHHHHHHSE-EEEEEEEEH
T ss_pred             CCCCCCCCHHHHHHCCC-EEEEEECCH
T ss_conf             75799939789987398-899997686


No 12 
>2oo4_A Notch 2, neurogenic locus notch homolog protein 2, HN2, notch2, NOTC2; alpha-beta-sandwich, SEA domain, LNR, LIN12 notch repeat, cysteine-rich; 2.00A {Homo sapiens}
Probab=26.92  E-value=30  Score=16.09  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=18.3

Q ss_pred             CCCHHCCCCEEEEEEEEECCEEE
Q ss_conf             12300077136899999789089
Q gi|254780996|r   70 EITPRMGNRKTVELLIEIDDQKV   92 (109)
Q Consensus        70 ~~~sraGnRraVElL~Eidg~Ki   92 (109)
                      -++|--|+.+...+..|||.||-
T Consensus       167 ~~~~~~~~~~~~~v~l~~dn~~c  189 (234)
T 2oo4_A          167 MVYPYYGEVAGSKVFLEIDNRQC  189 (234)
T ss_dssp             CEEEEESSSEEEEEEEEEECTTH
T ss_pred             EEEECCCCCCCEEEEEEECCHHC
T ss_conf             57735899765599999566001


No 13 
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=25.92  E-value=38  Score=15.44  Aligned_cols=25  Identities=16%  Similarity=0.150  Sum_probs=15.5

Q ss_pred             HCCCCCCCCCCHHCCCCEEEEEEEEE
Q ss_conf             24787710123000771368999997
Q gi|254780996|r   62 SYPLPAPQEITPRMGNRKTVELLIEI   87 (109)
Q Consensus        62 SYpl~~~~~~~sraGnRraVElL~Ei   87 (109)
                      +.|.........|+-||| ||+-|-.
T Consensus       136 ~~Pv~~n~t~egra~NRR-Vei~i~~  160 (169)
T 3ldt_A          136 KNAISDNAIIHGSAQNRR-IEIQWFT  160 (169)
T ss_dssp             TTSCCCTTTSCGGGGTSE-EEEEEEC
T ss_pred             CCCCCCCCCHHHHHHCCC-EEEEEEE
T ss_conf             686799939889985498-8999995


No 14 
>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1f3o_A*
Probab=24.23  E-value=4.8  Score=20.76  Aligned_cols=55  Identities=24%  Similarity=0.209  Sum_probs=34.6

Q ss_pred             ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECC-HHHHHHHHCC
Q ss_conf             737788724667875238521111235777651000124456400-0113332247
Q gi|254780996|r   10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKD-VARVLQVSYP   64 (109)
Q Consensus        10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~-~~rvLQ~SYp   64 (109)
                      -|||||...--.+-|+..-++=.+.+.|.+..+-.-..-..+|+. ..-|.|...+
T Consensus        39 ~SGsGKSTLl~~i~gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~~ig~vfQ~~~L   94 (235)
T 1l2t_A           39 PSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL   94 (235)
T ss_dssp             STTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred             CCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHHHCCCEEEECCCCHH
T ss_conf             99998999999998078998608999999988899889877526838998667201


No 15 
>1lni_A RNAse SA, guanyl-specific ribonuclease SA; hydrolase; 1.00A {Streptomyces aureofaciens} SCOP: d.1.1.2 PDB: 1c54_A 1ay7_A 1rge_A* 1rgf_A 1rgg_A 1rgh_A 1t2h_A 1i70_A 1i8v_A 1ynv_X 1ucl_A 1ucj_A 1uck_A 1uci_A 1t2i_A 1box_A 1gmp_A* 1gmq_A 1gmr_A* 1rsn_A* ...
Probab=24.12  E-value=29  Score=16.19  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=27.3

Q ss_pred             CHHCCCCEEEEEEEEECCEEEEEEEEEEEEEEEEE
Q ss_conf             30007713689999978908999987410135343
Q gi|254780996|r   72 TPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVK  106 (109)
Q Consensus        72 ~sraGnRraVElL~Eidg~KiWlLdiHLKSfCfld  106 (109)
                      ++..++|-|--|++--++..+|.-.=|-+|||-++
T Consensus        59 tpg~~~RGa~RIV~g~~~g~~YYT~DHY~sF~~I~   93 (96)
T 1lni_A           59 TPGARTRGTRRIITGEATQEDYYTGDHYATFSLID   93 (96)
T ss_dssp             CTTCSSCCSCEEEEESSTTCEEEESSTTSCCEEEE
T ss_pred             CCCCCCCCCCEEEECCCCCCEEECCCHHHHHEECC
T ss_conf             99999999876997899987887577765060131


No 16 
>3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: c.37.1.12 d.58.18.13
Probab=21.75  E-value=4.8  Score=20.77  Aligned_cols=55  Identities=13%  Similarity=0.030  Sum_probs=32.5

Q ss_pred             EEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHH
Q ss_conf             9973778872466787523852111123577765100012445640001133322
Q gi|254780996|r    8 IFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVS   62 (109)
Q Consensus         8 ify~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~S   62 (109)
                      +=.|||||...--.+-++..-++=.+...|.+...-.-..--.+|+...-|.|..
T Consensus        37 vG~SGsGKSTLlr~i~gL~~p~sG~I~~~g~~i~~~~~~~l~~~Rr~ig~VfQ~~   91 (343)
T 3dhw_C           37 IGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHF   91 (343)
T ss_dssp             EESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSC
T ss_pred             ECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCEEEEECCC
T ss_conf             9999834999999997599999759999999999899899999860778990150


No 17 
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=20.06  E-value=40  Score=15.31  Aligned_cols=38  Identities=13%  Similarity=0.135  Sum_probs=28.7

Q ss_pred             CCCHHCCCCEEEEEEEEECCEEEEEEEEEEEEEEEEEEC
Q ss_conf             123000771368999997890899998741013534304
Q gi|254780996|r   70 EITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKI  108 (109)
Q Consensus        70 ~~~sraGnRraVElL~Eidg~KiWlLdiHLKSfCfldsi  108 (109)
                      ++...-|.|-|--|++--|| .+|.-.=|-+||+-+.|-
T Consensus        74 DV~~~gg~RGa~RIV~s~DG-~iYyT~DHY~TF~rI~~~  111 (143)
T 2c4b_A           74 DINYTSGFRNSDRILYSSDW-LIYKTTDAYQTFTKIRSS  111 (143)
T ss_dssp             ECSCCSSSCCSCEEEEETTC-CEEEESSTTSCCEEEECC
T ss_pred             ECCCCCCCCCCCEEEECCCC-CEEECCCHHHHHHHHHCC
T ss_conf             64899988898769986998-689718645506605436


No 18 
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=20.04  E-value=5.3  Score=20.49  Aligned_cols=54  Identities=19%  Similarity=0.157  Sum_probs=25.5

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHHCCCCC
Q ss_conf             377887246678752385211112357776510001244564000113332247877
Q gi|254780996|r   11 SGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPA   67 (109)
Q Consensus        11 ~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~SYpl~~   67 (109)
                      |||||...-..+-|.++.++=.+...|.|..+-+..   .+|+...-|.|..++..+
T Consensus        89 sGsGKSTLl~ll~gl~~p~~G~I~i~g~~~~~~~~~---~lr~~i~~V~Q~~~lf~~  142 (306)
T 3nh6_A           89 SGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQA---SLRSHIGVVPQDTVLFND  142 (306)
T ss_dssp             SCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHH---HHHHTEEEECSSCCCCSE
T ss_pred             CCCHHHHHHHHHHCCCCCCCCEEEECCEECHHHCHH---HHHHHEEEECCCCCCCCC
T ss_conf             998699999999656657887696777830442699---998535897646743556


No 19 
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=20.04  E-value=20  Score=17.11  Aligned_cols=48  Identities=17%  Similarity=0.137  Sum_probs=33.1

Q ss_pred             ECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHCEEEEEEEECCHHHHHHHH
Q ss_conf             73778872466787523852111123577765100012445640001133322
Q gi|254780996|r   10 YSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVS   62 (109)
Q Consensus        10 y~~~~~~~~~~s~kr~~n~sk~D~n~~~~~td~~dihTAIaiRK~~~rvLQ~S   62 (109)
                      -|||||...-..+-|++.-++=.+...|.|...     .-.-|+...-|.|..
T Consensus        32 psGsGKSTllr~i~Gl~~p~~G~I~i~g~di~~-----~~~~~r~ig~vfQ~~   79 (240)
T 2onk_A           32 PTGAGKSVFLELIAGIVKPDRGEVRLNGADITP-----LPPERRGIGFVPQDY   79 (240)
T ss_dssp             CTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT-----SCTTTSCCBCCCSSC
T ss_pred             CCCCHHHHHHHHHHCCCCCCCEEEEECCEECCC-----CCHHHCCCEEECCCC
T ss_conf             999819999999972999996299999999987-----658777711477865


Done!