BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780996|ref|YP_003065409.1| hypothetical protein
CLIBASIA_04485 [Candidatus Liberibacter asiaticus str. psy62]
(109 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780996|ref|YP_003065409.1| hypothetical protein CLIBASIA_04485 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040673|gb|ACT57469.1| hypothetical protein CLIBASIA_04485 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 109
Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats.
Identities = 109/109 (100%), Positives = 109/109 (100%)
Query: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ
Sbjct: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
Query: 61 VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ
Sbjct: 61 VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
>gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040474|gb|ACT57270.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 231
Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 53/91 (58%)
Query: 19 WDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNR 78
++++K +D +TD+ ++TAI IRK +LQ SY + + + G R
Sbjct: 60 YEAIKRVFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKR 119
Query: 79 KTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
+ VE+L E+D +K+WLL++HLKS C + I+
Sbjct: 120 RAVEILFEVDGRKIWLLDIHLKSFCFLDSIE 150
>gi|254781003|ref|YP_003065416.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040680|gb|ACT57476.1| hypothetical protein CLIBASIA_04520 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 304
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 18/109 (16%)
Query: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
P++ W IFY S + +N S D N +DI+TAIA+RK RVLQ
Sbjct: 84 FPKNTWCIFY----------STERLINHSKRDSN--------NDIHTAIAVRKKNVRVLQ 125
Query: 61 VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
SYPL ++ R GNR+ VELL+EI+ +K+W+L++HLKS C + ++
Sbjct: 126 QSYPLLGAKDSFSRAGNRRAVELLVEINGKKIWVLDIHLKSFCFLDSLE 174
>gi|315122019|ref|YP_004062508.1| hypothetical protein CKC_01345 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495421|gb|ADR52020.1| hypothetical protein CKC_01345 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 315
Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 19 WDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNR 78
+ ++K +++ D+DE ++TAI RK VL+ SY ++ + G R
Sbjct: 92 YAAIKRVFPEDTWEILYSGNDSDEHTVHTAIVARKGTVHVLEKSYLSMDTNKLDSKAGKR 151
Query: 79 KTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
++VE+L E++ K+WLL++HLKS C V ++
Sbjct: 152 RSVEILFEVNGIKIWLLDIHLKSFCFVDSLK 182
>gi|190892922|ref|YP_001979464.1| hypothetical protein RHECIAT_CH0003338 [Rhizobium etli CIAT 652]
gi|190698201|gb|ACE92286.1| hypothetical protein RHECIAT_CH0003338 [Rhizobium etli CIAT 652]
Length = 357
Score = 38.2 bits (87), Expect = 0.38, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 23 KGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGN----- 77
+ C+N SS+ + D DI TAIA +K + ++ +V P + +
Sbjct: 93 ERCMNNSSH------CNEDIDDIFTAIAYKKSLGQLTEVQVPQLSVMHTSECANETPRPV 146
Query: 78 RKTVELLIEIDDQKVWLLNVHLKSSC 103
R V + I+ D++ + +L+VHLK+SC
Sbjct: 147 RGGVGIQIQRDNETIVVLSVHLKASC 172
>gi|88860700|ref|ZP_01135337.1| hypothetical protein PTD2_05565 [Pseudoalteromonas tunicata D2]
gi|88817295|gb|EAR27113.1| hypothetical protein PTD2_05565 [Pseudoalteromonas tunicata D2]
Length = 316
Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 26/113 (23%)
Query: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
PED+W I S + V+ + SGN T + A A+RK
Sbjct: 102 FPEDQWQIIISKRADSEVYSCRE-----------SGNTSTQQK---VAFAVRK------- 140
Query: 61 VSYPLPAPQEITPRM----GNRKTVELLIEIDDQKVWLLNVHLKSSCVVKKIQ 109
S P+ G R + + ++ D +LNVHLKS C V +
Sbjct: 141 -SIPVLNTHHYDELALGLNGLRYGLSVTVDTADGATEVLNVHLKSGCFVDDYE 192
>gi|109896633|ref|YP_659888.1| endonuclease/exonuclease/phosphatase [Pseudoalteromonas atlantica
T6c]
gi|109698914|gb|ABG38834.1| Endonuclease/exonuclease/phosphatase [Pseudoalteromonas atlantica
T6c]
Length = 331
Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 18/106 (16%)
Query: 1 MPEDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
PE W + S +P ++ + + A AI+K ++ +
Sbjct: 122 FPESDWTLVLSARADSPAYECRESGFTSTQQKV--------------AFAIKKGISILQV 167
Query: 61 VSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNVHLKSSCVVK 106
Q+I R G TV+ + D +LNVHLKS C V
Sbjct: 168 QQNAQLGLQKIGLRFGLAVTVDTPLGPTD----ILNVHLKSGCFVD 209
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.322 0.131 0.369
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 830,195,974
Number of Sequences: 14124377
Number of extensions: 21964667
Number of successful extensions: 68353
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 68342
Number of HSP's gapped (non-prelim): 18
length of query: 109
length of database: 4,842,793,630
effective HSP length: 77
effective length of query: 32
effective length of database: 3,755,216,601
effective search space: 120166931232
effective search space used: 120166931232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 75 (33.6 bits)