RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780996|ref|YP_003065409.1| hypothetical protein
CLIBASIA_04485 [Candidatus Liberibacter asiaticus str. psy62]
(109 letters)
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 252
Score = 31.1 bits (70), Expect = 0.056
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 11 SGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINT----AIAIRKDVARVLQVSYPLP 66
SGCGK+ V S+ + +G I D++DI ++IR+ V V Q P P
Sbjct: 39 SGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFP 98
Query: 67 A 67
A
Sbjct: 99 A 99
>gnl|CDD|168927 PRK07374, dnaE, DNA polymerase III subunit alpha; Validated.
Length = 1170
Score = 27.4 bits (61), Expect = 0.80
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 47 TAIAIRKDVARVLQVSY 63
T+ A+ KDVARVL + Y
Sbjct: 445 TSKAVLKDVARVLDIPY 461
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding
protein; Provisional.
Length = 251
Score = 27.3 bits (60), Expect = 1.0
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 12/64 (18%)
Query: 11 SGCGKNPVWDSMKGCLNFSSYD-DN---SGNIDTDESDINTA----IAIRKDVARVLQVS 62
SGCGK+ + CLN + D +N +G I + +I + + +RK+V V Q
Sbjct: 39 SGCGKS----TFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQP 94
Query: 63 YPLP 66
P P
Sbjct: 95 TPFP 98
>gnl|CDD|181257 PRK08155, PRK08155, acetolactate synthase catalytic subunit;
Validated.
Length = 564
Score = 26.6 bits (59), Expect = 1.4
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 38 IDTDESD---INTA-IAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELL 84
+D D ++ I +AI+ DV VL PL Q PR + V L
Sbjct: 308 VDIDRAELGKIKQPHVAIQADVDDVLAQLLPLVEAQ---PRAEWHQLVADL 355
>gnl|CDD|180192 PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.
Length = 1135
Score = 26.2 bits (59), Expect = 1.7
Identities = 8/14 (57%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
Query: 50 AIRKDVARVLQVSY 63
IR DV RVL + Y
Sbjct: 438 VIR-DVGRVLGMPY 450
>gnl|CDD|185341 PRK15444, pduC, propanediol dehydratase large subunit; Provisional.
Length = 554
Score = 26.2 bits (58), Expect = 2.1
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 16/69 (23%)
Query: 7 YIFYSGCGKNPVWDSMKGCLNFSS--YDD----------NSGNIDTDESDINTAIAIRKD 54
+IF SG P +D+M NF + +DD + G E ++ IA+R
Sbjct: 359 FIF-SGYSAVPNYDNMFAGSNFDAEDFDDYNVLQRDLKVDGGLRPVREEEV---IAVRNK 414
Query: 55 VARVLQVSY 63
AR LQ +
Sbjct: 415 AARALQAVF 423
>gnl|CDD|181933 PRK09532, PRK09532, DNA polymerase III subunit alpha; Reviewed.
Length = 874
Score = 25.9 bits (57), Expect = 2.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 47 TAIAIRKDVARVLQVSY 63
T+ A+ KDVARVL + Y
Sbjct: 443 TSKAVLKDVARVLDIPY 459
>gnl|CDD|181373 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 25.8 bits (57), Expect = 2.7
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 11/41 (26%)
Query: 49 IAIRKDVARVLQVSYPLP-----------APQEITPRMGNR 78
++I D+ L + PLP AP+EI +MG++
Sbjct: 251 VSICPDMKSHLDLGNPLPHVSVSAGSDENAPEEIVVKMGDK 291
>gnl|CDD|161981 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class.
The Lys-sensitive enzyme of Bacillus subtilis resembles
the E. coli form but is an alpha 2/beta 2
heterotetramer, where the beta subunit is translated
from an in-phase alternative initiator at Met-246. The
protein slr0657 from Synechocystis PCC6803 is extended
by a duplication of the C-terminal region corresponding
to the beta chain. Incorporation of a second copy of the
C-terminal domain may be quite common in this subgroup
of aspartokinases.
Length = 401
Score = 25.4 bits (56), Expect = 3.2
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 28 FSSYDDNSGNI---DTDESDINTAIAIRKDVARV 58
SS+D G + + + IA+RK+V RV
Sbjct: 230 RSSFDPEEGTLITNSMENPPLVKGIALRKNVTRV 263
>gnl|CDD|183453 PRK12338, PRK12338, hypothetical protein; Provisional.
Length = 319
Score = 25.1 bits (55), Expect = 3.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 41 DESDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNR 78
D+ D I I++ R+ +SYP+P ++ R N
Sbjct: 216 DDLDEVIEIIIKRHGGRITDISYPIPGFKDPLKREVNV 253
>gnl|CDD|167581 PRK03670, PRK03670, competence damage-inducible protein A;
Provisional.
Length = 252
Score = 24.8 bits (54), Expect = 4.7
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 69 QEITPRMGNRKTVE--LLIEIDDQ 90
+E+ PR+G RK V+ L EI D+
Sbjct: 170 KEVLPRLGERKFVQKKFLAEITDE 193
>gnl|CDD|162580 TIGR01884, cas_HTH, CRISPR locus-related DNA-binding protein. Most
but not all examples of this family are associated with
CRISPR loci, a combination of DNA repeats and
characteristic proteins encoded near the repeat cluster.
The C-terminal region of this protein is homologous to
DNA-binding helix-turn-helix domains with predicted
transcriptional regulatory activity.
Length = 203
Score = 25.0 bits (55), Expect = 5.0
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 7/51 (13%)
Query: 47 TAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLLNV 97
AI ++ V RV S L + LL + +++ +L V
Sbjct: 108 LAILVKTRVFRVYYESEELIDFILLDLVP-------LLAGLSREELKVLEV 151
>gnl|CDD|150276 pfam09547, Spore_IV_A, Stage IV sporulation protein A (spore_IV_A).
SpoIVA is designated stage IV sporulation protein A. It
acts in the mother cell compartment and plays a role in
spore coat morphogenesis. A comparative genome analysis
of all sequenced genomes of Firmicutes shows that the
proteins are strictly conserved among the sub-set of
endospore-forming species.
Length = 492
Score = 24.5 bits (54), Expect = 6.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 70 EITPRMGNRKTVELLI-------EIDDQKVWLLNVHLKS 101
EI+P +G K E L+ E D +K+W N+ KS
Sbjct: 410 EISPIIGTEKQSEELVKYLLEEFEEDPEKIWESNIFGKS 448
>gnl|CDD|148956 pfam07632, DUF1593, Protein of unknown function (DUF1593). A
family of proteins in Rhodopirellula baltica that are
predicted to be secreted. Also, a member has been
identified in Caulobacter crescentus. These proteins mat
be related to pfam01156.
Length = 261
Score = 24.1 bits (53), Expect = 9.0
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 60 QVSYPLPAPQEITPRMGNRKTVELLIEIDDQKVWLL 95
Y +P E G+ +E L++ D + +W+L
Sbjct: 85 NPDYGMPFVGEGKDTEGSELIIEALLDDDPRPLWIL 120
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.135 0.417
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,759,068
Number of extensions: 95483
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 24
Length of query: 109
Length of database: 5,994,473
Length adjustment: 75
Effective length of query: 34
Effective length of database: 4,373,873
Effective search space: 148711682
Effective search space used: 148711682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)