RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780996|ref|YP_003065409.1| hypothetical protein
CLIBASIA_04485 [Candidatus Liberibacter asiaticus str. psy62]
(109 letters)
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics,
PSI- 2, protein structure initiative, northeast
structural genomics consortium; 1.45A {Homo sapiens}
PDB: 2khn_A (A:)
Length = 121
Score = 27.3 bits (60), Expect = 0.72
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 28 FSSYDDNSGNIDTDE 42
F S SG I D+
Sbjct: 39 FHSLKPISGFITGDQ 53
>1yrz_A Xylan beta-1,4-xylosidase; structural genomics, nysgxrc
target T1997, PSI, protein structure initiative; 2.00A
{Bacillus halodurans c-125} (A:68-237)
Length = 170
Score = 26.3 bits (57), Expect = 1.4
Identities = 2/30 (6%), Positives = 10/30 (33%)
Query: 3 EDKWYIFYSGCGKNPVWDSMKGCLNFSSYD 32
+ +Y+ Y+ + ++ +
Sbjct: 16 DGTFYLIYTDVKQWHGAFKDAHNYLVTAQN 45
>2it1_A 362AA long hypothetical maltose/maltodextrin transport
ATP-binding protein; structural genomics, NPPSFA; 1.94A
{Pyrococcus horikoshii} (A:1-231)
Length = 231
Score = 26.1 bits (57), Expect = 1.6
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 11 SGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
SG GK+ + ++ G Y SG I DE D+ ++V V Q
Sbjct: 38 SGSGKSTLLYTIAGI-----YKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82
>2k60_A Protein (stromal interaction molecule 1); EF-hand, SAM
domain, EF-SAM, STIM1, store operated calcium entry
regulator, SOCE; NMR {Homo sapiens} (A:1-66)
Length = 66
Score = 25.5 bits (56), Expect = 2.2
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 32 DDNSGNIDTDESD 44
DD +G++D +ESD
Sbjct: 26 DDANGDVDVEESD 38
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding,
EF-hand, EH domain; NMR {Homo sapiens} (A:)
Length = 106
Score = 25.3 bits (55), Expect = 2.6
Identities = 4/15 (26%), Positives = 7/15 (46%)
Query: 28 FSSYDDNSGNIDTDE 42
F S +G + D+
Sbjct: 21 FDSLSPVNGFLSGDK 35
>2qpt_A EH domain-containing protein-2; protein-nucleotide
complex, membrane protein, endocytosis; HET: ANP; 3.10A
{Mus musculus} (A:433-550)
Length = 118
Score = 25.4 bits (55), Expect = 2.8
Identities = 2/15 (13%), Positives = 5/15 (33%)
Query: 28 FSSYDDNSGNIDTDE 42
F + G + +
Sbjct: 32 FYNLAPADGKLSGSK 46
>1vkd_A Conserved hypothetical protein TM1225; structural
genomics, JCSG, PSI, protein structure initiative;
2.10A {Thermotoga maritima MSB8} (A:109-283)
Length = 175
Score = 25.0 bits (54), Expect = 3.4
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 3 EDKWYIFYSGCGKNPVW 19
ED +YI + P
Sbjct: 17 EDTYYITFCTDDHGPTI 33
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine
proteinases, papain-like, EF-hand, structural genomics,
structural genomics consortium, SGC; 1.80A {Homo
sapiens} (A:1-158)
Length = 158
Score = 24.9 bits (53), Expect = 3.9
Identities = 3/15 (20%), Positives = 5/15 (33%)
Query: 28 FSSYDDNSGNIDTDE 42
S +ID +
Sbjct: 11 SSGLVPRGSDIDATQ 25
>1vps_A Polyomavirus VP1 pentamer; virus coat protein,
oligosaccharide binding, virus assembly, sialic acid,
viral protein; HET: SIA GAL NAG; 1.90A {Murine
polyomavirus} (A:)
Length = 289
Score = 24.8 bits (54), Expect = 4.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 71 ITPRMGNRKTVELLIEIDDQKVWLLNVHLKSS 102
+ PRMG T E L E W ++L +S
Sbjct: 22 LNPRMGQPPTPESLTEGGQYYGWSRGINLATS 53
>1sid_A Polyomavirus coat protein VP1; icosahedral virus; HET: SIA
GAL BGC; 3.65A {Mouse polyomavirus} (A:1-342)
Length = 342
Score = 24.8 bits (54), Expect = 4.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 71 ITPRMGNRKTVELLIEIDDQKVWLLNVHLKSS 102
+ PRMG T E L E W ++L +S
Sbjct: 53 LNPRMGQPPTPESLTEGGQYYGWSRGINLATS 84
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein;
membrane protein; 3.10A {Archaeoglobus fulgidus}
(A:1-228)
Length = 228
Score = 24.5 bits (53), Expect = 4.8
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 11 SGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
+G GK+ + + G + G + + +DI R+ + V Q
Sbjct: 33 TGAGKSVFLELIAGIVKPDR-----GEVRLNGADITPLPPERRGIGFVPQ 77
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain
of cystein protease; 1.90A {Sus scrofa} (A:1-157)
Length = 157
Score = 24.7 bits (52), Expect = 5.0
Identities = 2/15 (13%), Positives = 5/15 (33%)
Query: 28 FSSYDDNSGNIDTDE 42
F+ + + E
Sbjct: 10 FAQLAGDDMEVSATE 24
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} (A:1-224)
Length = 224
Score = 24.4 bits (53), Expect = 5.0
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 11 SGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLP 66
+G GK + + G + +SG I D D+ + D+A V Q P
Sbjct: 35 TGAGKTLFLELIAGF-----HVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFP 85
>1f8v_A Mature capsid protein beta; nodavirus, coat protein,
nucleoprotein, protein-RNA interactions, RNA duplex,
RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus}
(A:)
Length = 355
Score = 24.2 bits (52), Expect = 6.0
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 52 RKDVARVLQVSYPLPAPQEITPRMGNRK 79
RK V+R + PA Q P +
Sbjct: 7 RKVVSRSTALVPMAPASQRTGPAPRKPR 34
>3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase,
GH43, alpha-L- arabinofuranosidase; HET: B3P; 1.30A
{Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A*
(A:66-231)
Length = 166
Score = 24.3 bits (52), Expect = 6.5
Identities = 3/30 (10%), Positives = 10/30 (33%)
Query: 3 EDKWYIFYSGCGKNPVWDSMKGCLNFSSYD 32
+ K+++ Y+ ++ D
Sbjct: 16 DGKFWLIYTDVKVVDGMWKDCHNYLTTAED 45
>2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43,
hydrolase; HET: MES; 1.88A {Geobacillus
stearothermophilus} (A:67-236)
Length = 170
Score = 24.3 bits (52), Expect = 6.6
Identities = 2/28 (7%), Positives = 8/28 (28%)
Query: 3 EDKWYIFYSGCGKNPVWDSMKGCLNFSS 30
+ K+++ Y+ +
Sbjct: 16 DGKFWLIYTDVKVVEGQWKDGHNYLVTC 43
>1yif_A Beta-1,4-xylosidase; glycosidase, xylan, structural
genomics, PSI, protein structure initiative; 1.80A
{Bacillus subtilis} (A:66-231)
Length = 166
Score = 24.0 bits (51), Expect = 7.5
Identities = 2/28 (7%), Positives = 8/28 (28%)
Query: 3 EDKWYIFYSGCGKNPVWDSMKGCLNFSS 30
+ K+++ Y+ +
Sbjct: 16 DGKFWLIYTDVKVVDGAWKDCHNYLVTC 43
>2hnh_A DNA polymerase III alpha subunit; DNA replication,
nucleotidyltransferase, POL beta, PHP; HET: DNA; 2.30A
{Escherichia coli} PDB: 2hqa_A* (A:438-502)
Length = 65
Score = 23.7 bits (52), Expect = 8.1
Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
Query: 50 AIRKDVARVLQVSYP 64
IR DV RVL Y
Sbjct: 4 VIR-DVGRVLGHPYG 17
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC
transporter, periplasmic solute-binding protein,
bicarbonate-binding protein; 1.35A {Synechocystis SP}
PDB: 2i48_A 2i4b_A 2i4c_A (A:124-242,A:301-341)
Length = 160
Score = 23.8 bits (51), Expect = 8.4
Identities = 8/58 (13%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 35 SGNID---TDESDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKTVELLIEIDD 89
+G +D T + + +++ + ++ + +P G + IDD
Sbjct: 87 NGTMDAFSTGDP--WPYRIVTENIGYMAGLTAQIWTTILESPFKGQYTMGDGQPAIDD 142
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.317 0.135 0.417
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 848,214
Number of extensions: 32596
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 24
Length of query: 109
Length of database: 4,956,049
Length adjustment: 65
Effective length of query: 44
Effective length of database: 2,758,724
Effective search space: 121383856
Effective search space used: 121383856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)