RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780996|ref|YP_003065409.1| hypothetical protein
CLIBASIA_04485 [Candidatus Liberibacter asiaticus str. psy62]
         (109 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.9 bits (71), Expect = 0.033
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 6/33 (18%)

Query: 50 AIRKDVARVLQVSYPLPAPQEITPRMGNRKTVE 82
          A++K     LQ S  L A  +  P +  + T+E
Sbjct: 21 ALKK-----LQASLKLYA-DDSAPALAIKATME 47


>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
          motif, beta sandwich, ligand binding protein; 1.90A
          {Alicyclobacillus acidocaldarius}
          Length = 355

 Score = 25.9 bits (57), Expect = 2.0
 Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 5/50 (10%)

Query: 11 SGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
          SG GK  +   + G    +      G++      +      +++V  V Q
Sbjct: 50 SGSGKTTILRLIAGLERPTK-----GDVWIGGKRVTDLPPQKRNVGLVFQ 94


>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
          ATP-binding, nucleotide-binding, membrane,
          transmembrane, transport protein; 3.00A {Methanosarcina
          acetivorans} SCOP: b.40.6.3 c.37.1.12
          Length = 348

 Score = 25.9 bits (57), Expect = 2.4
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 5/50 (10%)

Query: 11 SGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
          +G GK    + + G     S     G I  D  D+      + D+A V Q
Sbjct: 35 TGAGKTLFLELIAGFHVPDS-----GRILLDGKDVTDLSPEKHDIAFVYQ 79


>2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding
          cassette, transport protein; HET: ADP; 2.30A
          {Escherichia coli K12} SCOP: b.40.6.3 c.37.1.12 PDB:
          1q1e_A 1q12_A* 2awo_A* 3fh6_A 2r6g_A* 1q1b_A
          Length = 381

 Score = 25.6 bits (56), Expect = 2.5
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 11 SGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQ 60
          SGCGK+ +   + G    +S     G++   E  +N      + V  V Q
Sbjct: 38 SGCGKSTLLRMIAGLETITS-----GDLFIGEKRMNDTPPAERGVGMVFQ 82


>3akh_A Putative secreted alpha L-arabinofuranosidase II; five-bladed beta
           propeller, beta-trefoil, hydrolase; HET: AHR; 1.70A
           {Streptomyces avermitilis} PDB: 3akf_A* 3akg_A* 3aki_A*
          Length = 468

 Score = 25.8 bits (56), Expect = 2.6
 Identities = 7/35 (20%), Positives = 17/35 (48%)

Query: 3   EDKWYIFYSGCGKNPVWDSMKGCLNFSSYDDNSGN 37
           + KWY++++    + VW      L   + +  +G+
Sbjct: 85  DGKWYVYFAAGSTSDVWAIRMYVLESGAANPLTGS 119


>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein,
          flexible fitting; 8.90A {Thermomyces lanuginosus}
          Length = 86

 Score = 25.0 bits (55), Expect = 4.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 50 AIRKDVARVLQV 61
           +RK +A VL V
Sbjct: 45 TVRKSIACVLTV 56


>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold,
           structural genomics, center for structural genomics of
           infectious diseases; 1.99A {Campylobacter jejuni}
          Length = 152

 Score = 24.5 bits (53), Expect = 6.2
 Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 3/27 (11%)

Query: 80  TVELLIEID---DQKVWLLNVHLKSSC 103
           T     E     ++ +W++   L+ +C
Sbjct: 124 TAAFAQENIAKYEKSLWMIGATLQGAC 150


>2fb5_A Hypothetical membrane spanning protein; structural genomics,
           membrane protein, PSI, protein structure initiative;
           1.99A {Bacillus cereus} SCOP: d.320.1.1
          Length = 205

 Score = 24.4 bits (53), Expect = 6.5
 Identities = 7/31 (22%), Positives = 13/31 (41%)

Query: 48  AIAIRKDVARVLQVSYPLPAPQEITPRMGNR 78
           A+ ++ +         PL    E+ P +G R
Sbjct: 137 AVLVKNNHIVSAANILPLTKSTEVDPELGTR 167


>2it1_A 362AA long hypothetical maltose/maltodextrin transport
          ATP-binding protein; structural genomics, NPPSFA; 1.94A
          {Pyrococcus horikoshii}
          Length = 362

 Score = 24.5 bits (53), Expect = 6.7
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 11 SGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLP 66
          SG GK+ +  ++ G    +S     G I  DE D+       ++V  V Q     P
Sbjct: 38 SGSGKSTLLYTIAGIYKPTS-----GKIYFDEKDVTELPPKDRNVGLVFQNWALYP 88


>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
          transport, sugar uptake and regulation, transport
          protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
          b.40.6.3 c.37.1.12 PDB: 1vci_A*
          Length = 372

 Score = 24.4 bits (53), Expect = 6.9
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 11 SGCGKNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLP 66
          SGCGK      + G    +      G I   + D+       ++++ V Q     P
Sbjct: 46 SGCGKTTTLRMIAGLEEPTE-----GRIYFGDRDVTYLPPKDRNISMVFQSYAVWP 96


>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair,
           DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A
           {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
          Length = 377

 Score = 23.9 bits (52), Expect = 8.1
 Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)

Query: 48  AIAIRKDVARVLQVSYPLPAPQEI-TPRMGNR 78
           AI + +D+ ++   +  L     I T   G R
Sbjct: 97  AIVLSEDITKIYYANVHLVPDPTIPTGETGTR 128


>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR
           TLA SRT MES; 1.9A {Bacillus firmus}
          Length = 358

 Score = 24.2 bits (52), Expect = 8.4
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 12/62 (19%)

Query: 1   MPEDKWYIFYSGCG--KNPVWDSMKGCLNFSSYDDNSGNIDTDESDINTAIAI--RKDVA 56
           M    W+I         +P W+ +        YD+ + N+  DE++  T I      D A
Sbjct: 160 MLNQNWHIHNMTNATDASPGWNLL--------YDERTTNLTLDETERVTLIVTLGHADTA 211

Query: 57  RV 58
           R+
Sbjct: 212 RI 213


>2pyb_A NAPA, neutrophil activating protein; ferritin, DPS, four-helix
           bundle, metal transport; 2.60A {Borrelia burgdorferi}
          Length = 151

 Score = 23.8 bits (51), Expect = 8.8
 Identities = 7/85 (8%), Positives = 29/85 (34%), Gaps = 8/85 (9%)

Query: 21  SMKGCLNFSSYDDNSGNIDTDESDINTAIAIRKDVARVLQVSYPLPAPQEITPRMGNRKT 80
                +  S   +      ++        ++   V  + ++   +   +++    G+  T
Sbjct: 71  RYSEFMKKSFIKELDIESTSNFLP-----SMESIVCSLTEILKNIFGMRKLIDTAGDYGT 125

Query: 81  VELLIEIDD---QKVWLLNVHLKSS 102
             ++ +I     + +W+    L++ 
Sbjct: 126 ANIMDDIMSDLEKHLWMHKALLENC 150


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 967,930
Number of extensions: 38390
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 21
Length of query: 109
Length of database: 5,693,230
Length adjustment: 73
Effective length of query: 36
Effective length of database: 3,923,418
Effective search space: 141243048
Effective search space used: 141243048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)