Query gi|254780997|ref|YP_003065410.1| hypothetical protein CLIBASIA_04490 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 78 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 20:38:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780997.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2jhn_A ALKA, 3-methyladenine 11.4 93 0.0028 13.4 1.0 10 43-52 43-52 (61) 2 >1a8s_A Chloroperoxidase F; ha 10.9 78 0.0023 13.8 0.5 24 1-24 15-38 (75) 3 >1a88_A Chloroperoxidase L; ha 10.2 90 0.0026 13.5 0.6 24 1-24 15-38 (75) 4 >2dt7_A Splicing factor 3A sub 10.0 1E+02 0.003 13.2 0.9 10 17-26 8-17 (38) 5 >2q9r_A Protein of unknown fun 9.1 1.4E+02 0.0041 12.5 3.6 26 39-64 14-39 (200) 6 >3bo0_B Preprotein translocase 8.2 1.5E+02 0.0045 12.2 1.8 35 37-71 19-53 (65) 7 >1unl_D Cyclin-dependent kinas 8.0 1.1E+02 0.0032 13.1 0.3 18 28-45 75-93 (208) 8 >1pp9_F Ubiquinol-cytochrome C 7.3 1E+02 0.003 13.3 -0.1 49 11-59 10-67 (78) 9 >1zoi_A Esterase; alpha/beta h 6.4 1.7E+02 0.0049 12.0 0.6 24 2-25 12-35 (68) 10 >3cnf_T VP3; cytoplasmic polyh 6.0 93 0.0027 13.4 -0.9 19 30-48 44-62 (75) No 1 >>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A (A:235-295) Probab=11.43 E-value=93 Score=13.43 Aligned_cols=10 Identities=20% Similarity=0.175 Sum_probs=7.0 Q ss_pred HHHHHHHHHH Q ss_conf 8999999999 Q gi|254780997|r 43 WQQFLFYLLP 52 (78) Q Consensus 43 wqqflfyllp 52 (78) -||+|||-.- T Consensus 43 AQqYLF~y~R 52 (61) T 2jhn_A 43 ILFYLFLYDR 52 (61) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHCH T ss_conf 9999998283 No 2 >>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} (A:129-203) Probab=10.90 E-value=78 Score=13.85 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=18.1 Q ss_pred CCHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 923344445678987645801448 Q gi|254780997|r 1 MINQILIDRSVVLLNLIGNPFSGF 24 (78) Q Consensus 1 minqilidrsvvllnlignpfsgf 24 (78) |+..++-||+--+.+.--++|+|+ T Consensus 15 i~~~~~~DR~~F~~df~~~fF~~~ 38 (75) T 1a8s_A 15 IRQASLADRSQLYKDLASGPFFGF 38 (75) T ss_dssp HHHHHHHHHHHHHHHHHHTTSSST T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 566677777788888753123311 No 3 >>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} (A:131-205) Probab=10.18 E-value=90 Score=13.52 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=18.2 Q ss_pred CCHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 923344445678987645801448 Q gi|254780997|r 1 MINQILIDRSVVLLNLIGNPFSGF 24 (78) Q Consensus 1 minqilidrsvvllnlignpfsgf 24 (78) |+..++-||+--+.+.--++|+|+ T Consensus 15 i~~~~~~DR~~F~~df~~~fF~g~ 38 (75) T 1a88_A 15 FRAALAANRAQFYIDVPSGPFYGF 38 (75) T ss_dssp HHHHHHHCHHHHHHHHHHTTTTTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 555444446788876444432112 No 4 >>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Probab=10.02 E-value=1e+02 Score=13.19 Aligned_cols=10 Identities=40% Similarity=0.634 Sum_probs=8.3 Q ss_pred HCCCHHHHHH Q ss_conf 4580144899 Q gi|254780997|r 17 IGNPFSGFYA 26 (78) Q Consensus 17 ignpfsgfya 26 (78) -||||.-||. T Consensus 8 ~~~~F~EFY~ 17 (38) T 2dt7_A 8 GPNEFAEFYN 17 (38) T ss_dssp SCCHHHHHHH T ss_pred CCCHHHHHHH T ss_conf 8854999999 No 5 >>2q9r_A Protein of unknown function; YP_001051499.1, DUF, structural genomics, joint center for structural genomics, JCSG; 1.91A {Shewanella baltica OS155} (A:) Probab=9.10 E-value=1.4e+02 Score=12.47 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=18.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 08738999999999999999998889 Q gi|254780997|r 39 LLPPWQQFLFYLLPVAVLVPFISFFP 64 (78) Q Consensus 39 llppwqqflfyllpvavlvpfisffp 64 (78) -|++|||..|-.--..-..|-...|- T Consensus 14 ~L~~wQ~~~F~aaLcERM~PNY~lF~ 39 (200) T 2q9r_A 14 ALTLPQKQLFATALCQRXLPNYQLFS 39 (200) T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHHHCCCHHHHH T ss_conf 67508999999999998162399999 No 6 >>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B (B:) Probab=8.16 E-value=1.5e+02 Score=12.25 Aligned_cols=35 Identities=14% Similarity=0.015 Sum_probs=29.5 Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 42087389999999999999999988899999997 Q gi|254780997|r 37 QSLLPPWQQFLFYLLPVAVLVPFISFFPFLIDAFA 71 (78) Q Consensus 37 qsllppwqqflfyllpvavlvpfisffpflidafa 71 (78) .---|.+++-.-+-+-|.+.+-.++.|-+++|..- T Consensus 19 KV~WPtr~E~~~~T~vVli~~ii~~~~l~~~D~~~ 53 (65) T 3bo0_B 19 KVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYII 53 (65) T ss_dssp HHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 51089808988799999999999999999999999 No 7 >>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegenerative diseases; HET: RRC; 2.2A {Homo sapiens} (D:) Probab=8.00 E-value=1.1e+02 Score=13.11 Aligned_cols=18 Identities=56% Similarity=0.798 Sum_probs=13.0 Q ss_pred HHHHHHHHHHHCC-CCHHH Q ss_conf 9999997534208-73899 Q gi|254780997|r 28 RFSLLRSVDQSLL-PPWQQ 45 (78) Q Consensus 28 rfsllrsvdqsll-ppwqq 45 (78) -.--+|+||.||| --||. T Consensus 75 ~V~WlR~VDRSLLLQGWQD 93 (208) T 1unl_D 75 PVLWLRSVDRSLLLQGWQD 93 (208) T ss_dssp HHHHHHHHHHHHHHTTSCS T ss_pred EEHHHHHHHHHHHHHHHHH T ss_conf 1222875249998721013 No 8 >>1pp9_F Ubiquinol-cytochrome C reductase complex 14 kDa protein; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} (F:33-110) Probab=7.33 E-value=1e+02 Score=13.26 Aligned_cols=49 Identities=27% Similarity=0.136 Sum_probs=31.2 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHH----HHCCCCHHH-----HHHHHHHHHHHHHH Q ss_conf 78987645801448999999999753----420873899-----99999999999999 Q gi|254780997|r 11 VVLLNLIGNPFSGFYAIRFSLLRSVD----QSLLPPWQQ-----FLFYLLPVAVLVPF 59 (78) Q Consensus 11 vvllnlignpfsgfyairfsllrsvd----qsllppwqq-----flfyllpvavlvpf 59 (78) .|--.|---|-.-.|+--|-+.|..| +.+||.=|+ +.+||.|....|-. T Consensus 10 ~v~eALrRLP~~~~~~R~~Ri~RA~~lS~~h~~LPke~wtk~eed~~YL~Pyi~eV~~ 67 (78) T 1pp9_F 10 DVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEVIR 67 (78) T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCGGGCCCSSHHHHHHHHH T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHH T ss_conf 9999999589989999999999999998344528997745776564778999999999 No 9 >>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} (A:136-203) Probab=6.37 E-value=1.7e+02 Score=12.05 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=16.7 Q ss_pred CHHHHHHHHHHHHHHHCCCHHHHH Q ss_conf 233444456789876458014489 Q gi|254780997|r 2 INQILIDRSVVLLNLIGNPFSGFY 25 (78) Q Consensus 2 inqilidrsvvllnlignpfsgfy 25 (78) ...++-||+--+..+-.+||-|+- T Consensus 12 r~~i~~DR~qF~~df~~~~Fyg~n 35 (68) T 1zoi_A 12 QAQVASNRAQFYRDVPAGPFYGYN 35 (68) T ss_dssp HHHHHHCHHHHHHHHHHTTTTTTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 665432366777654455544203 No 10 >>3cnf_T VP3; cytoplasmic polyhedrosis virus, capsid protein, turret protein, polyhedrin-binding domain, guanylyltransferase domain; 3.88A {Bombyx mori cypovirus 1} (T:1-75) Probab=5.99 E-value=93 Score=13.44 Aligned_cols=19 Identities=47% Similarity=0.546 Sum_probs=0.0 Q ss_pred HHHHHHHHHCCCCHHHHHH Q ss_conf 9999753420873899999 Q gi|254780997|r 30 SLLRSVDQSLLPPWQQFLF 48 (78) Q Consensus 30 sllrsvdqsllppwqqflf 48 (78) |-+||-.-.++.|||-|-| T Consensus 44 s~~RSHtL~~~~P~~Y~~~ 62 (75) T 3cnf_T 44 SQRRSHTLRLLGPFQYFNF 62 (75) T ss_pred HHHHCCCEEEECCHHCEEE T ss_conf 0220012475043410442 Done!