Query         gi|254780997|ref|YP_003065410.1| hypothetical protein CLIBASIA_04490 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 78
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 20:38:15 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780997.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2jhn_A ALKA, 3-methyladenine   11.4      93  0.0028   13.4   1.0   10   43-52     43-52  (61)
  2 >1a8s_A Chloroperoxidase F; ha  10.9      78  0.0023   13.8   0.5   24    1-24     15-38  (75)
  3 >1a88_A Chloroperoxidase L; ha  10.2      90  0.0026   13.5   0.6   24    1-24     15-38  (75)
  4 >2dt7_A Splicing factor 3A sub  10.0   1E+02   0.003   13.2   0.9   10   17-26      8-17  (38)
  5 >2q9r_A Protein of unknown fun   9.1 1.4E+02  0.0041   12.5   3.6   26   39-64     14-39  (200)
  6 >3bo0_B Preprotein translocase   8.2 1.5E+02  0.0045   12.2   1.8   35   37-71     19-53  (65)
  7 >1unl_D Cyclin-dependent kinas   8.0 1.1E+02  0.0032   13.1   0.3   18   28-45     75-93  (208)
  8 >1pp9_F Ubiquinol-cytochrome C   7.3   1E+02   0.003   13.3  -0.1   49   11-59     10-67  (78)
  9 >1zoi_A Esterase; alpha/beta h   6.4 1.7E+02  0.0049   12.0   0.6   24    2-25     12-35  (68)
 10 >3cnf_T VP3; cytoplasmic polyh   6.0      93  0.0027   13.4  -0.9   19   30-48     44-62  (75)

No 1  
>>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A (A:235-295)
Probab=11.43  E-value=93  Score=13.43  Aligned_cols=10  Identities=20%  Similarity=0.175  Sum_probs=7.0

Q ss_pred             HHHHHHHHHH
Q ss_conf             8999999999
Q gi|254780997|r   43 WQQFLFYLLP   52 (78)
Q Consensus        43 wqqflfyllp   52 (78)
                      -||+|||-.-
T Consensus        43 AQqYLF~y~R   52 (61)
T 2jhn_A           43 ILFYLFLYDR   52 (61)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHCH
T ss_conf             9999998283


No 2  
>>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate complex; 1.80A {Pseudomonas fluorescens} (A:129-203)
Probab=10.90  E-value=78  Score=13.85  Aligned_cols=24  Identities=38%  Similarity=0.603  Sum_probs=18.1

Q ss_pred             CCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             923344445678987645801448
Q gi|254780997|r    1 MINQILIDRSVVLLNLIGNPFSGF   24 (78)
Q Consensus         1 minqilidrsvvllnlignpfsgf   24 (78)
                      |+..++-||+--+.+.--++|+|+
T Consensus        15 i~~~~~~DR~~F~~df~~~fF~~~   38 (75)
T 1a8s_A           15 IRQASLADRSQLYKDLASGPFFGF   38 (75)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             566677777788888753123311


No 3  
>>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A {Streptomyces lividans} (A:131-205)
Probab=10.18  E-value=90  Score=13.52  Aligned_cols=24  Identities=21%  Similarity=0.520  Sum_probs=18.2

Q ss_pred             CCHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf             923344445678987645801448
Q gi|254780997|r    1 MINQILIDRSVVLLNLIGNPFSGF   24 (78)
Q Consensus         1 minqilidrsvvllnlignpfsgf   24 (78)
                      |+..++-||+--+.+.--++|+|+
T Consensus        15 i~~~~~~DR~~F~~df~~~fF~g~   38 (75)
T 1a88_A           15 FRAALAANRAQFYIDVPSGPFYGF   38 (75)
T ss_dssp             HHHHHHHCHHHHHHHHHHTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             555444446788876444432112


No 4  
>>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=10.02  E-value=1e+02  Score=13.19  Aligned_cols=10  Identities=40%  Similarity=0.634  Sum_probs=8.3

Q ss_pred             HCCCHHHHHH
Q ss_conf             4580144899
Q gi|254780997|r   17 IGNPFSGFYA   26 (78)
Q Consensus        17 ignpfsgfya   26 (78)
                      -||||.-||.
T Consensus         8 ~~~~F~EFY~   17 (38)
T 2dt7_A            8 GPNEFAEFYN   17 (38)
T ss_dssp             SCCHHHHHHH
T ss_pred             CCCHHHHHHH
T ss_conf             8854999999


No 5  
>>2q9r_A Protein of unknown function; YP_001051499.1, DUF, structural genomics, joint center for structural genomics, JCSG; 1.91A {Shewanella baltica OS155} (A:)
Probab=9.10  E-value=1.4e+02  Score=12.47  Aligned_cols=26  Identities=23%  Similarity=0.184  Sum_probs=18.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             08738999999999999999998889
Q gi|254780997|r   39 LLPPWQQFLFYLLPVAVLVPFISFFP   64 (78)
Q Consensus        39 llppwqqflfyllpvavlvpfisffp   64 (78)
                      -|++|||..|-.--..-..|-...|-
T Consensus        14 ~L~~wQ~~~F~aaLcERM~PNY~lF~   39 (200)
T 2q9r_A           14 ALTLPQKQLFATALCQRXLPNYQLFS   39 (200)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             67508999999999998162399999


No 6  
>>3bo0_B Preprotein translocase SECE subunit; ribosome-SECY complex, protein translocation; 9.60A {Escherichia coli} PDB: 3bo1_B (B:)
Probab=8.16  E-value=1.5e+02  Score=12.25  Aligned_cols=35  Identities=14%  Similarity=0.015  Sum_probs=29.5

Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             42087389999999999999999988899999997
Q gi|254780997|r   37 QSLLPPWQQFLFYLLPVAVLVPFISFFPFLIDAFA   71 (78)
Q Consensus        37 qsllppwqqflfyllpvavlvpfisffpflidafa   71 (78)
                      .---|.+++-.-+-+-|.+.+-.++.|-+++|..-
T Consensus        19 KV~WPtr~E~~~~T~vVli~~ii~~~~l~~~D~~~   53 (65)
T 3bo0_B           19 KVIWPTRKPTKDEYLAVAKVTALGISLLGIIGYII   53 (65)
T ss_dssp             HHSCTTTTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             51089808988799999999999999999999999


No 7  
>>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegenerative diseases; HET: RRC; 2.2A {Homo sapiens} (D:)
Probab=8.00  E-value=1.1e+02  Score=13.11  Aligned_cols=18  Identities=56%  Similarity=0.798  Sum_probs=13.0

Q ss_pred             HHHHHHHHHHHCC-CCHHH
Q ss_conf             9999997534208-73899
Q gi|254780997|r   28 RFSLLRSVDQSLL-PPWQQ   45 (78)
Q Consensus        28 rfsllrsvdqsll-ppwqq   45 (78)
                      -.--+|+||.||| --||.
T Consensus        75 ~V~WlR~VDRSLLLQGWQD   93 (208)
T 1unl_D           75 PVLWLRSVDRSLLLQGWQD   93 (208)
T ss_dssp             HHHHHHHHHHHHHHTTSCS
T ss_pred             EEHHHHHHHHHHHHHHHHH
T ss_conf             1222875249998721013


No 8  
>>1pp9_F Ubiquinol-cytochrome C reductase complex 14 kDa protein; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein, cytochrome B; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} (F:33-110)
Probab=7.33  E-value=1e+02  Score=13.26  Aligned_cols=49  Identities=27%  Similarity=0.136  Sum_probs=31.2

Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHH----HHCCCCHHH-----HHHHHHHHHHHHHH
Q ss_conf             78987645801448999999999753----420873899-----99999999999999
Q gi|254780997|r   11 VVLLNLIGNPFSGFYAIRFSLLRSVD----QSLLPPWQQ-----FLFYLLPVAVLVPF   59 (78)
Q Consensus        11 vvllnlignpfsgfyairfsllrsvd----qsllppwqq-----flfyllpvavlvpf   59 (78)
                      .|--.|---|-.-.|+--|-+.|..|    +.+||.=|+     +.+||.|....|-.
T Consensus        10 ~v~eALrRLP~~~~~~R~~Ri~RA~~lS~~h~~LPke~wtk~eed~~YL~Pyi~eV~~   67 (78)
T 1pp9_F           10 DVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQWTKYEEDKSYLEPYLKEVIR   67 (78)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGSCCGGGCCCSSHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf             9999999589989999999999999998344528997745776564778999999999


No 9  
>>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida} (A:136-203)
Probab=6.37  E-value=1.7e+02  Score=12.05  Aligned_cols=24  Identities=21%  Similarity=0.422  Sum_probs=16.7

Q ss_pred             CHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             233444456789876458014489
Q gi|254780997|r    2 INQILIDRSVVLLNLIGNPFSGFY   25 (78)
Q Consensus         2 inqilidrsvvllnlignpfsgfy   25 (78)
                      ...++-||+--+..+-.+||-|+-
T Consensus        12 r~~i~~DR~qF~~df~~~~Fyg~n   35 (68)
T 1zoi_A           12 QAQVASNRAQFYRDVPAGPFYGYN   35 (68)
T ss_dssp             HHHHHHCHHHHHHHHHHTTTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             665432366777654455544203


No 10 
>>3cnf_T VP3; cytoplasmic polyhedrosis virus, capsid protein, turret protein, polyhedrin-binding domain, guanylyltransferase domain; 3.88A {Bombyx mori cypovirus 1} (T:1-75)
Probab=5.99  E-value=93  Score=13.44  Aligned_cols=19  Identities=47%  Similarity=0.546  Sum_probs=0.0

Q ss_pred             HHHHHHHHHCCCCHHHHHH
Q ss_conf             9999753420873899999
Q gi|254780997|r   30 SLLRSVDQSLLPPWQQFLF   48 (78)
Q Consensus        30 sllrsvdqsllppwqqflf   48 (78)
                      |-+||-.-.++.|||-|-|
T Consensus        44 s~~RSHtL~~~~P~~Y~~~   62 (75)
T 3cnf_T           44 SQRRSHTLRLLGPFQYFNF   62 (75)
T ss_pred             HHHHCCCEEEECCHHCEEE
T ss_conf             0220012475043410442


Done!