Query         gi|254780997|ref|YP_003065410.1| hypothetical protein CLIBASIA_04490 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 78
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:00:18 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780997.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1unld_ a.74.1.1 (D:) CDK5 act   9.2      36  0.0026   13.6   0.3   18   28-45     30-48  (150)
  2 d1xsva_ a.4.13.3 (A:) Hypothet   7.3      69   0.005   12.0   3.4   25   26-50      5-29  (106)
  3 d1vbga1 c.1.12.2 (A:521-876) P   6.4      51  0.0037   12.7   0.0   16   18-33    144-159 (356)
  4 d1kbla1 c.1.12.2 (A:510-873) P   6.0      57  0.0041   12.5   0.0   15   18-32    149-163 (364)
  5 d1h6za1 c.1.12.2 (A:538-903) P   5.7      67  0.0049   12.1   0.3   16   18-33    146-161 (366)
  6 d3claa_ c.43.1.1 (A:) Chloramp   4.0 1.1E+02  0.0081   10.9   0.9   17   60-76     48-64  (213)
  7 d1q23a_ c.43.1.1 (A:) Chloramp   3.9 1.1E+02  0.0083   10.8   0.9   17   60-76     49-65  (214)
  8 d1ujsa_ a.14.1.1 (A:) Actin-bi   3.6 1.2E+02  0.0089   10.6   0.6    6   40-45     67-72  (88)
  9 d1scza_ c.43.1.1 (A:) Dihydrol   2.9 1.1E+02  0.0081   10.9  -0.5   17   60-76     60-76  (233)
 10 d1qzpa_ a.14.1.1 (A:) Dematin    2.7 1.5E+02   0.011   10.1   0.6    6   40-45     53-58  (68)

No 1  
>d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.24  E-value=36  Score=13.57  Aligned_cols=18  Identities=56%  Similarity=0.798  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHCC-CCHHH
Q ss_conf             9999997534208-73899
Q gi|254780997|r   28 RFSLLRSVDQSLL-PPWQQ   45 (78)
Q Consensus        28 rfsllrsvdqsll-ppwqq   45 (78)
                      -.--+|+||.||| .-||.
T Consensus        30 ~v~WlR~VDRsLLLQGWQD   48 (150)
T d1unld_          30 PVLWLRSVDRSLLLQGWQD   48 (150)
T ss_dssp             HHHHHHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             0044986149999721123


No 2  
>d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]}
Probab=7.26  E-value=69  Score=12.01  Aligned_cols=25  Identities=32%  Similarity=0.298  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             9999999975342087389999999
Q gi|254780997|r   26 AIRFSLLRSVDQSLLPPWQQFLFYL   50 (78)
Q Consensus        26 airfsllrsvdqsllppwqqflfyl   50 (78)
                      -+|.+.|-..-+++|||-|+-.+.+
T Consensus         5 ~~~~~~L~d~y~~LLpe~QR~vl~L   29 (106)
T d1xsva_           5 TLRMNYLFDFYQSLLTNKQRNYLEL   29 (106)
T ss_dssp             HHHHHHHHHHHGGGSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             9999999999987699999999999


No 3  
>d1vbga1 c.1.12.2 (A:521-876) Pyruvate phosphate dikinase, C-terminal domain {Maize (Zea mays) [TaxId: 4577]}
Probab=6.42  E-value=51  Score=12.70  Aligned_cols=16  Identities=31%  Similarity=0.517  Sum_probs=13.4

Q ss_pred             CCCHHHHHHHHHHHHH
Q ss_conf             5801448999999999
Q gi|254780997|r   18 GNPFSGFYAIRFSLLR   33 (78)
Q Consensus        18 gnpfsgfyairfsllr   33 (78)
                      .||+-|+-+||+++-+
T Consensus       144 ~NP~LG~RGiR~~l~~  159 (356)
T d1vbga1         144 VNPMLGFRGCRLGISY  159 (356)
T ss_dssp             SCGGGSSCTHHHHHHS
T ss_pred             CCCCHHCEEEEECHHH
T ss_conf             8843202045501021


No 4  
>d1kbla1 c.1.12.2 (A:510-873) Pyruvate phosphate dikinase, C-terminal domain {Clostridium symbiosum [TaxId: 1512]}
Probab=5.96  E-value=57  Score=12.47  Aligned_cols=15  Identities=27%  Similarity=0.419  Sum_probs=13.0

Q ss_pred             CCCHHHHHHHHHHHH
Q ss_conf             580144899999999
Q gi|254780997|r   18 GNPFSGFYAIRFSLL   32 (78)
Q Consensus        18 gnpfsgfyairfsll   32 (78)
                      .||+-|+-+||+++-
T Consensus       149 ~NP~LG~RGiR~~l~  163 (364)
T d1kbla1         149 FNPMMGHRGCRLAVT  163 (364)
T ss_dssp             SCGGGSSCTHHHHHH
T ss_pred             CCCCCCCCCCCCEEE
T ss_conf             784224433213426


No 5  
>d1h6za1 c.1.12.2 (A:538-903) Pyruvate phosphate dikinase, C-terminal domain {Trypanosoma brucei [TaxId: 5691]}
Probab=5.68  E-value=67  Score=12.06  Aligned_cols=16  Identities=25%  Similarity=0.364  Sum_probs=13.7

Q ss_pred             CCCHHHHHHHHHHHHH
Q ss_conf             5801448999999999
Q gi|254780997|r   18 GNPFSGFYAIRFSLLR   33 (78)
Q Consensus        18 gnpfsgfyairfsllr   33 (78)
                      .||+-|+-+||+++.+
T Consensus       146 ~NP~LG~RGiR~~L~~  161 (366)
T d1h6za1         146 LNPMLGHRGCRLGITY  161 (366)
T ss_dssp             SSSTTSSCHHHHHHHS
T ss_pred             CCCCCCCHHHHHHCCC
T ss_conf             8841234566554148


No 6  
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=4.04  E-value=1.1e+02  Score=10.86  Aligned_cols=17  Identities=24%  Similarity=0.544  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHCCC
Q ss_conf             98889999999752258
Q gi|254780997|r   60 ISFFPFLIDAFALGLQD   76 (78)
Q Consensus        60 isffpflidafalglqd   76 (78)
                      +||+|+++-|.+..++.
T Consensus        48 ~sf~~~~~~a~~~Al~~   64 (213)
T d3claa_          48 YKFYPVMIYLIAQAVNQ   64 (213)
T ss_dssp             CCHHHHHHHHHHHHHTT
T ss_pred             CCEEHHHHHHHHHHHHH
T ss_conf             97609999999999986


No 7  
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=3.90  E-value=1.1e+02  Score=10.79  Aligned_cols=17  Identities=24%  Similarity=0.430  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHCCC
Q ss_conf             98889999999752258
Q gi|254780997|r   60 ISFFPFLIDAFALGLQD   76 (78)
Q Consensus        60 isffpflidafalglqd   76 (78)
                      +||+|+++-|.+..+++
T Consensus        49 ~sf~~~~~~av~~Al~~   65 (214)
T d1q23a_          49 HKFYPAFIHILARLMNA   65 (214)
T ss_dssp             CCHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHH
T ss_conf             98179999999999984


No 8  
>d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.61  E-value=1.2e+02  Score=10.65  Aligned_cols=6  Identities=33%  Similarity=1.066  Sum_probs=0.0

Q ss_pred             CCCHHH
Q ss_conf             873899
Q gi|254780997|r   40 LPPWQQ   45 (78)
Q Consensus        40 lppwqq   45 (78)
                      ||.|.|
T Consensus        67 LP~WKq   72 (88)
T d1ujsa_          67 LALWKR   72 (88)
T ss_dssp             SCHHHH
T ss_pred             CCHHHH
T ss_conf             709899


No 9  
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}
Probab=2.92  E-value=1.1e+02  Score=10.87  Aligned_cols=17  Identities=24%  Similarity=0.555  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHCCC
Q ss_conf             98889999999752258
Q gi|254780997|r   60 ISFFPFLIDAFALGLQD   76 (78)
Q Consensus        60 isffpflidafalglqd   76 (78)
                      +|+.+|++.|.+..|++
T Consensus        60 lt~~~~likA~a~aL~~   76 (233)
T d1scza_          60 LGFMSFYVKAVVEALKR   76 (233)
T ss_dssp             CCSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
T ss_conf             47999999999999995


No 10 
>d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.75  E-value=1.5e+02  Score=10.13  Aligned_cols=6  Identities=33%  Similarity=1.066  Sum_probs=0.0

Q ss_pred             CCCHHH
Q ss_conf             873899
Q gi|254780997|r   40 LPPWQQ   45 (78)
Q Consensus        40 lppwqq   45 (78)
                      ||.|.|
T Consensus        53 Lp~WKq   58 (68)
T d1qzpa_          53 LALWKR   58 (68)
T ss_dssp             SCHHHH
T ss_pred             CCHHHH
T ss_conf             859789


Done!