Query gi|254780997|ref|YP_003065410.1| hypothetical protein CLIBASIA_04490 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 78 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 11:00:18 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780997.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1unld_ a.74.1.1 (D:) CDK5 act 9.2 36 0.0026 13.6 0.3 18 28-45 30-48 (150) 2 d1xsva_ a.4.13.3 (A:) Hypothet 7.3 69 0.005 12.0 3.4 25 26-50 5-29 (106) 3 d1vbga1 c.1.12.2 (A:521-876) P 6.4 51 0.0037 12.7 0.0 16 18-33 144-159 (356) 4 d1kbla1 c.1.12.2 (A:510-873) P 6.0 57 0.0041 12.5 0.0 15 18-32 149-163 (364) 5 d1h6za1 c.1.12.2 (A:538-903) P 5.7 67 0.0049 12.1 0.3 16 18-33 146-161 (366) 6 d3claa_ c.43.1.1 (A:) Chloramp 4.0 1.1E+02 0.0081 10.9 0.9 17 60-76 48-64 (213) 7 d1q23a_ c.43.1.1 (A:) Chloramp 3.9 1.1E+02 0.0083 10.8 0.9 17 60-76 49-65 (214) 8 d1ujsa_ a.14.1.1 (A:) Actin-bi 3.6 1.2E+02 0.0089 10.6 0.6 6 40-45 67-72 (88) 9 d1scza_ c.43.1.1 (A:) Dihydrol 2.9 1.1E+02 0.0081 10.9 -0.5 17 60-76 60-76 (233) 10 d1qzpa_ a.14.1.1 (A:) Dematin 2.7 1.5E+02 0.011 10.1 0.6 6 40-45 53-58 (68) No 1 >d1unld_ a.74.1.1 (D:) CDK5 activator 1 (NCK5a, p25) {Human (Homo sapiens) [TaxId: 9606]} Probab=9.24 E-value=36 Score=13.57 Aligned_cols=18 Identities=56% Similarity=0.798 Sum_probs=12.8 Q ss_pred HHHHHHHHHHHCC-CCHHH Q ss_conf 9999997534208-73899 Q gi|254780997|r 28 RFSLLRSVDQSLL-PPWQQ 45 (78) Q Consensus 28 rfsllrsvdqsll-ppwqq 45 (78) -.--+|+||.||| .-||. T Consensus 30 ~v~WlR~VDRsLLLQGWQD 48 (150) T d1unld_ 30 PVLWLRSVDRSLLLQGWQD 48 (150) T ss_dssp HHHHHHHHHHHHHHTTSCS T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 0044986149999721123 No 2 >d1xsva_ a.4.13.3 (A:) Hypothetical protein SAV1236 {Staphylococcus aureus, strain Mu50 / ATCC 700699 [TaxId: 1280]} Probab=7.26 E-value=69 Score=12.01 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=19.9 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 9999999975342087389999999 Q gi|254780997|r 26 AIRFSLLRSVDQSLLPPWQQFLFYL 50 (78) Q Consensus 26 airfsllrsvdqsllppwqqflfyl 50 (78) -+|.+.|-..-+++|||-|+-.+.+ T Consensus 5 ~~~~~~L~d~y~~LLpe~QR~vl~L 29 (106) T d1xsva_ 5 TLRMNYLFDFYQSLLTNKQRNYLEL 29 (106) T ss_dssp HHHHHHHHHHHGGGSCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 9999999999987699999999999 No 3 >d1vbga1 c.1.12.2 (A:521-876) Pyruvate phosphate dikinase, C-terminal domain {Maize (Zea mays) [TaxId: 4577]} Probab=6.42 E-value=51 Score=12.70 Aligned_cols=16 Identities=31% Similarity=0.517 Sum_probs=13.4 Q ss_pred CCCHHHHHHHHHHHHH Q ss_conf 5801448999999999 Q gi|254780997|r 18 GNPFSGFYAIRFSLLR 33 (78) Q Consensus 18 gnpfsgfyairfsllr 33 (78) .||+-|+-+||+++-+ T Consensus 144 ~NP~LG~RGiR~~l~~ 159 (356) T d1vbga1 144 VNPMLGFRGCRLGISY 159 (356) T ss_dssp SCGGGSSCTHHHHHHS T ss_pred CCCCHHCEEEEECHHH T ss_conf 8843202045501021 No 4 >d1kbla1 c.1.12.2 (A:510-873) Pyruvate phosphate dikinase, C-terminal domain {Clostridium symbiosum [TaxId: 1512]} Probab=5.96 E-value=57 Score=12.47 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=13.0 Q ss_pred CCCHHHHHHHHHHHH Q ss_conf 580144899999999 Q gi|254780997|r 18 GNPFSGFYAIRFSLL 32 (78) Q Consensus 18 gnpfsgfyairfsll 32 (78) .||+-|+-+||+++- T Consensus 149 ~NP~LG~RGiR~~l~ 163 (364) T d1kbla1 149 FNPMMGHRGCRLAVT 163 (364) T ss_dssp SCGGGSSCTHHHHHH T ss_pred CCCCCCCCCCCCEEE T ss_conf 784224433213426 No 5 >d1h6za1 c.1.12.2 (A:538-903) Pyruvate phosphate dikinase, C-terminal domain {Trypanosoma brucei [TaxId: 5691]} Probab=5.68 E-value=67 Score=12.06 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.7 Q ss_pred CCCHHHHHHHHHHHHH Q ss_conf 5801448999999999 Q gi|254780997|r 18 GNPFSGFYAIRFSLLR 33 (78) Q Consensus 18 gnpfsgfyairfsllr 33 (78) .||+-|+-+||+++.+ T Consensus 146 ~NP~LG~RGiR~~L~~ 161 (366) T d1h6za1 146 LNPMLGHRGCRLGITY 161 (366) T ss_dssp SSSTTSSCHHHHHHHS T ss_pred CCCCCCCHHHHHHCCC T ss_conf 8841234566554148 No 6 >d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Probab=4.04 E-value=1.1e+02 Score=10.86 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=12.0 Q ss_pred HHHHHHHHHHHHHHCCC Q ss_conf 98889999999752258 Q gi|254780997|r 60 ISFFPFLIDAFALGLQD 76 (78) Q Consensus 60 isffpflidafalglqd 76 (78) +||+|+++-|.+..++. T Consensus 48 ~sf~~~~~~a~~~Al~~ 64 (213) T d3claa_ 48 YKFYPVMIYLIAQAVNQ 64 (213) T ss_dssp CCHHHHHHHHHHHHHTT T ss_pred CCEEHHHHHHHHHHHHH T ss_conf 97609999999999986 No 7 >d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Probab=3.90 E-value=1.1e+02 Score=10.79 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHCCC Q ss_conf 98889999999752258 Q gi|254780997|r 60 ISFFPFLIDAFALGLQD 76 (78) Q Consensus 60 isffpflidafalglqd 76 (78) +||+|+++-|.+..+++ T Consensus 49 ~sf~~~~~~av~~Al~~ 65 (214) T d1q23a_ 49 HKFYPAFIHILARLMNA 65 (214) T ss_dssp CCHHHHHHHHHHHHHTT T ss_pred CCCHHHHHHHHHHHHHH T ss_conf 98179999999999984 No 8 >d1ujsa_ a.14.1.1 (A:) Actin-binding LIM protein homologue KIAA0843 {Human (Homo sapiens) [TaxId: 9606]} Probab=3.61 E-value=1.2e+02 Score=10.65 Aligned_cols=6 Identities=33% Similarity=1.066 Sum_probs=0.0 Q ss_pred CCCHHH Q ss_conf 873899 Q gi|254780997|r 40 LPPWQQ 45 (78) Q Consensus 40 lppwqq 45 (78) ||.|.| T Consensus 67 LP~WKq 72 (88) T d1ujsa_ 67 LALWKR 72 (88) T ss_dssp SCHHHH T ss_pred CCHHHH T ss_conf 709899 No 9 >d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Probab=2.92 E-value=1.1e+02 Score=10.87 Aligned_cols=17 Identities=24% Similarity=0.555 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHHHCCC Q ss_conf 98889999999752258 Q gi|254780997|r 60 ISFFPFLIDAFALGLQD 76 (78) Q Consensus 60 isffpflidafalglqd 76 (78) +|+.+|++.|.+..|++ T Consensus 60 lt~~~~likA~a~aL~~ 76 (233) T d1scza_ 60 LGFMSFYVKAVVEALKR 76 (233) T ss_dssp CCSHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHH T ss_conf 47999999999999995 No 10 >d1qzpa_ a.14.1.1 (A:) Dematin {Human (Homo sapiens) [TaxId: 9606]} Probab=2.75 E-value=1.5e+02 Score=10.13 Aligned_cols=6 Identities=33% Similarity=1.066 Sum_probs=0.0 Q ss_pred CCCHHH Q ss_conf 873899 Q gi|254780997|r 40 LPPWQQ 45 (78) Q Consensus 40 lppwqq 45 (78) ||.|.| T Consensus 53 Lp~WKq 58 (68) T d1qzpa_ 53 LALWKR 58 (68) T ss_dssp SCHHHH T ss_pred CCHHHH T ss_conf 859789 Done!