RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780997|ref|YP_003065410.1| hypothetical protein CLIBASIA_04490 [Candidatus Liberibacter asiaticus str. psy62] (78 letters) >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte receptor B; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic vesicle; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 2z7x_A* (A:1-513) Length = 513 Score = 25.8 bits (54), Expect = 2.3 Identities = 4/15 (26%), Positives = 7/15 (46%) Query: 9 RSVVLLNLIGNPFSG 23 S+ + L NP+ Sbjct: 497 TSLQKIWLHTNPWDC 511 >2z63_A TOLL-like receptor 4, variable lymphocyte receptor B; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} (A:1-534) Length = 534 Score = 25.5 bits (53), Expect = 2.9 Identities = 3/10 (30%), Positives = 5/10 (50%) Query: 14 LNLIGNPFSG 23 + L NP+ Sbjct: 523 IWLHTNPWDC 532 >2z7x_B TOLL-like receptor 1, variable lymphocyte receptor B; TLR2, TLR1, lipopeptide, innate immunity, glycoprotein, immune response, inflammatory response, leucine-rich repeat, membrane; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} (B:1-484) Length = 484 Score = 25.4 bits (53), Expect = 3.1 Identities = 3/10 (30%), Positives = 5/10 (50%) Query: 14 LNLIGNPFSG 23 + L NP+ Sbjct: 473 IWLHTNPWDC 482 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.335 0.152 0.475 Gapped Lambda K H 0.267 0.0339 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 597,638 Number of extensions: 21870 Number of successful extensions: 132 Number of sequences better than 10.0: 1 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 12 Length of query: 78 Length of database: 4,956,049 Length adjustment: 43 Effective length of query: 35 Effective length of database: 3,502,434 Effective search space: 122585190 Effective search space used: 122585190 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 50 (24.1 bits)