RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780997|ref|YP_003065410.1| hypothetical protein
CLIBASIA_04490 [Candidatus Liberibacter asiaticus str. psy62]
         (78 letters)



>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte
           receptor B; TLR2, PAM3CSK4, lipopeptide, innate
           immunity, cytoplasmic vesicle; HET: NAG BMA MAN PCJ;
           1.80A {Mus musculus} PDB: 2z82_A* 2z7x_A* (A:1-513)
          Length = 513

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 4/15 (26%), Positives = 7/15 (46%)

Query: 9   RSVVLLNLIGNPFSG 23
            S+  + L  NP+  
Sbjct: 497 TSLQKIWLHTNPWDC 511


>2z63_A TOLL-like receptor 4, variable lymphocyte receptor B; TLR4,
           MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo
           sapiens} (A:1-534)
          Length = 534

 Score = 25.5 bits (53), Expect = 2.9
 Identities = 3/10 (30%), Positives = 5/10 (50%)

Query: 14  LNLIGNPFSG 23
           + L  NP+  
Sbjct: 523 IWLHTNPWDC 532


>2z7x_B TOLL-like receptor 1, variable lymphocyte receptor B; TLR2,
           TLR1, lipopeptide, innate immunity, glycoprotein, immune
           response, inflammatory response, leucine-rich repeat,
           membrane; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
           (B:1-484)
          Length = 484

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 3/10 (30%), Positives = 5/10 (50%)

Query: 14  LNLIGNPFSG 23
           + L  NP+  
Sbjct: 473 IWLHTNPWDC 482


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.335    0.152    0.475 

Gapped
Lambda     K      H
   0.267   0.0339    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 597,638
Number of extensions: 21870
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 12
Length of query: 78
Length of database: 4,956,049
Length adjustment: 43
Effective length of query: 35
Effective length of database: 3,502,434
Effective search space: 122585190
Effective search space used: 122585190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (24.1 bits)