RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780997|ref|YP_003065410.1| hypothetical protein
CLIBASIA_04490 [Candidatus Liberibacter asiaticus str. psy62]
         (78 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 34/98 (34%)

Query: 2   INQIL-IDR--SVVLLN------LIGNPFSGFYAIRFSL-LRSV------DQSLLPPWQ- 44
            N  L   +   + L+N      + G P S  Y    +L LR        DQS +P  + 
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVVSGPPQS-LYG--LNLTLRKAKAPSGLDQSRIPFSER 412

Query: 45  ------QFLFYLLPVAVLVPFISFFPFLIDAFALGLQD 76
                 +FL    PVA   PF S    L+ A  L  +D
Sbjct: 413 KLKFSNRFL----PVAS--PFHS--HLLVPASDLINKD 442



 Score = 26.1 bits (57), Expect = 2.2
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 27/85 (31%)

Query: 6   LIDRSV-VLLNLIGNP--FSGFYAIRFSLLRSVDQSLLPPWQQFLF---------YLLPV 53
           LI  S   L  LI         +    ++L          W   L          YLL +
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILE---------W---LENPSNTPDKDYLLSI 234

Query: 54  AVLVPFI---SFFPFLIDAFALGLQ 75
            +  P I       +++ A  LG  
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFT 259


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.335    0.152    0.475 

Gapped
Lambda     K      H
   0.267   0.0498    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 683,297
Number of extensions: 25339
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 9
Length of query: 78
Length of database: 5,693,230
Length adjustment: 47
Effective length of query: 31
Effective length of database: 4,553,762
Effective search space: 141166622
Effective search space used: 141166622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.6 bits)