HHsearch alignment for GI: 254780998 and conserved domain: TIGR03391
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=100.00 E-value=0 Score=311.90 Aligned_cols=129 Identities=32% Similarity=0.554 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHCCCCEEEEEEEEECCCCCCCCEEEEEECCHHHHHHH
Q ss_conf 88899999875099989999999999850899995686815502265601678873046545488799994162699999
Q gi|254780998|r 2 IPINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQIVCG 81 (146)
Q Consensus 2 ~~l~~i~e~f~~~~d~~~ry~~Li~lgk~l~~l~e~~k~~~~~V~GCqS~vWl~~~~~~~~~~~~~~~f~~dSda~IvkG 81 (146)
T Consensus 10 ~t~~eI~e~F~~~~~wedry~~LIdlGk~lp~l~~~~k~d~n~V~GC~S~vWl~~~~~----~dg~~~f~~DSDA~IvkG 85 (138)
T TIGR03391 10 ITAADLIATFAACRQWEDRYRQLILLAKQLPALPEALKTQATELTGCENRVWLGHQVL----PDGTLHFYGDSEGRIVRG 85 (138)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHCHHHCCCCCCCCEEEEEEEC----CCCEEEEEECCCHHHHHH
T ss_conf 7999999999826999999999999983299999789373202567633346766665----898799984460799999
Q ss_pred HHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999999759988999807989999870904316942899999999999999
Q gi|254780998|r 82 LLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDL 134 (146)
Q Consensus 82 l~~ll~~~~~g~t~~eI~~~d~~~f~~~lgL~~~Lt~~R~nGl~~m~~~ik~~ 134 (146)
T Consensus 86 L~alll~~~~g~tp~eI~~~d~~~~~~~lGL~~~LSpsR~NGl~ami~~Ik~i 138 (138)
T TIGR03391 86 LLAVLLTAVEGKTPEQLLAQDPLALFDELGLRAQLSASRSNGLAALAAAIQNI 138 (138)
T ss_pred HHHHHHHHHCCCCHHHHHHCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 99999999779998999856999999885870226810889999999998539