RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780998|ref|YP_003065411.1| hypothetical protein
CLIBASIA_04495 [Candidatus Liberibacter asiaticus str. psy62]
         (146 letters)



>gnl|CDD|181767 PRK09296, PRK09296, cysteine desufuration protein SufE;
           Provisional.
          Length = 138

 Score = 81.2 bits (201), Expect = 8e-17
 Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 4/113 (3%)

Query: 19  DRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQI 78
           ++Y Y+IELG++LP    E  + QN++ GC S++W+V+    +G    I+     SD+ I
Sbjct: 22  EKYLYIIELGQRLPPLTDEDRSPQNLIQGCQSQVWIVMRQNAQG----IIELQGDSDAAI 77

Query: 79  VCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKI 131
           V GL+ +V  +Y      +I+  D     + L LT++L+  R  GL  ++  I
Sbjct: 78  VKGLIAVVFILYQQMTPQDIVNFDVRPWFEKLALTQHLTPSRSQGLEAMIRAI 130


>gnl|CDD|132432 TIGR03391, FeS_syn_CsdE, cysteine desulfurase, sulfur acceptor
           subunit CsdE.  Members of this protein family are CsdE,
           formerly called YgdK. This protein, found as a paralog
           to SufE in Escherichia coli, Yersinia pestis,
           Photorhabdus luminescens, and related species, works
           together and physically interacts with CsdA (a paralog
           of SufS). CsdA has cysteine desulfurase activity that is
           enhanced by this protein (CsdE), in which Cys-61
           (numbered as in E. coli) is a sulfur acceptor site. This
           gene pair, although involved in FeS cluster
           biosynthesis, is not found next to other such genes as
           are its paralogs from the Suf or Isc systems.
          Length = 138

 Score = 78.7 bits (194), Expect = 5e-16
 Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 10/134 (7%)

Query: 2   IPINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENK 61
           I   D+I          DRY  LI L K+LP  P+   T    + GC +++W+       
Sbjct: 10  ITAADLIATFAACRQWEDRYRQLILLAKQLPALPEALKTQATELTGCENRVWL------- 62

Query: 62  GDQ---DPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQ 118
           G Q   D  + FY  S+ +IV GLL ++ +    K   ++L  D L +   LGL   LS 
Sbjct: 63  GHQVLPDGTLHFYGDSEGRIVRGLLAVLLTAVEGKTPEQLLAQDPLALFDELGLRAQLSA 122

Query: 119 KRMNGLYTIVNKIQ 132
            R NGL  +   IQ
Sbjct: 123 SRSNGLAALAAAIQ 136


>gnl|CDD|184980 PRK15019, PRK15019, CsdA-binding activator; Provisional.
          Length = 147

 Score = 71.9 bits (176), Expect = 5e-14
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 19  DRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDPIMIFYAVSDSQI 78
           D+Y  LI LGK+LP  P E       +AGC +++W+       G     M F+  S+ +I
Sbjct: 32  DKYRQLIMLGKQLPALPDELKAQAKEIAGCENRVWLGYTVAENGK----MHFFGDSEGRI 87

Query: 79  VCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNGLYTIVNKIQDLTQE 137
           V GLL ++ +    K  +E+     L +   LGL   LS  R  GL  +   I   T++
Sbjct: 88  VRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSASRSQGLNALSEAIIAATKQ 146


>gnl|CDD|178278 PLN02673, PLN02673, quinolinate synthetase A.
          Length = 724

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 10/133 (7%)

Query: 7   IIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQDP 66
           +I++ + + +  DR   L+     LP  P+    + N V GC +++W+    E + DQD 
Sbjct: 88  LIKEFKSLTEPVDRVKRLLHYASLLPPLPESSRVESNRVMGCTAQVWL----EAELDQDG 143

Query: 67  IMIFYAVSDSQI---VCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMNG 123
            M F+A SDS+I    C  L  V    + +++ E LK + L  L ++GL     + R+N 
Sbjct: 144 KMRFWADSDSEITKGFCSCLIWVLDGASPEEVLE-LKTEDLAAL-NVGLPGG-ERSRVNT 200

Query: 124 LYTIVNKIQDLTQ 136
            + ++  +Q  T+
Sbjct: 201 WHNVLVSMQKRTR 213


>gnl|CDD|173345 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional.
          Length = 693

 Score = 30.7 bits (69), Expect = 0.17
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 13/52 (25%)

Query: 71  YAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRMN 122
           Y V++ Q++CG  YI   +YA K+  EI             LT+NL +K +N
Sbjct: 398 YDVTN-QLLCGSCYIASQMYAFKRRIEI------------ALTKNLDKKYLN 436


>gnl|CDD|132132 TIGR03088, stp2, sugar transferase, PEP-CTERM/EpsH1 system
           associated.  Members of this family include a match to
           the pfam00534 Glycosyl transferases group 1 domain.
           Nearly all are found in species that encode the
           PEP-CTERM/exosortase system predicted to act in protein
           sorting in a number of Gram-negative bacteria. In
           particular, these transferases are found proximal to a
           particular variant of exosortase, EpsH1, which appears
           to travel with a conserved group of genes summarized by
           Genome Property GenProp0652. The nature of the sugar
           transferase reaction catalyzed by members of this clade
           is unknown and may conceivably be variable with respect
           to substrate by species, but we hypothesize a conserved
           substrate.
          Length = 374

 Score = 28.9 bits (65), Expect = 0.56
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 18  HDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMV 55
            +R+H     G + P+ P ++  D+++V G + +L  V
Sbjct: 171 TERFH--PSRGDRSPILPPDFFADESVVVGTVGRLQAV 206


>gnl|CDD|163340 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase.
            Members of this protein family are polyribonucleotide
           nucleotidyltransferase, also called polynucleotide
           phosphorylase. Some members have been shown also to have
           additional functions as guanosine pentaphosphate
           synthetase and as poly(A) polymerase (see model
           TIGR02696 for an exception clade, within this family).
          Length = 684

 Score = 26.7 bits (60), Expect = 2.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 32  PLFPKEYMTDQNIVAGCMS 50
           PLFPK +  +  +VA  +S
Sbjct: 92  PLFPKGFRNEVQVVATVLS 110


>gnl|CDD|128580 smart00284, OLF, Olfactomedin-like domains. 
          Length = 255

 Score = 26.3 bits (58), Expect = 3.3
 Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 18/90 (20%)

Query: 18  HDRYHYLIELGKKLPLFPKE------YMTDQN---IVAGCMSKLWMVIE--WENKGDQDP 66
           ++R+ Y       + L   E      Y T+QN   IV   ++   + IE  W    ++  
Sbjct: 118 NNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKR- 176

Query: 67  IMIFYAVSDSQIVCGLLYIVKSIYA-HKKI 95
                + S++ ++CG+LY+ +S+ +  +K+
Sbjct: 177 -----SASNAFMICGILYVTRSLGSKGEKV 201


>gnl|CDD|180485 PRK06245, cofG, FO synthase subunit 1; Reviewed.
          Length = 336

 Score = 25.6 bits (57), Expect = 4.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 5   NDIIEDMEMIEDLHDRYHYLIE 26
            D  E +E I +LH+RY ++ E
Sbjct: 182 EDRAESLEAIAELHERYGHIQE 203


>gnl|CDD|131451 TIGR02398, gluc_glyc_Psyn, glucosylglycerol-phosphate synthase.
           Glucosylglycerol-phosphate synthase catalyzes the key
           step in the biosynthesis of the osmolyte
           glucosylglycerol. It is known in several cyanobacteria
           and in Pseudomonas anguilliseptica. The enzyme is
           closely related to the alpha,alpha-trehalose-phosphate
           synthase, likewise involved in osmolyte biosynthesis, of
           E. coli and many other bacteria. A close homolog from
           Xanthomonas campestris is excluded from this model and
           scores between trusted and noise.
          Length = 487

 Score = 25.6 bits (56), Expect = 4.9
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 100 KMDSLTILQHLGLTENLSQKRMNGLYTIVNK--IQDLTQEYL 139
           +MD  TI   L + +   Q RM  ++  VN   +Q    E+L
Sbjct: 437 RMDE-TIYVALAMPKAEQQARMREMFDAVNYYDVQRWADEFL 477


>gnl|CDD|183327 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase;
           Provisional.
          Length = 693

 Score = 25.4 bits (57), Expect = 6.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 32  PLFPKEYMTDQNIVAGCMS 50
           PLFPK +  +  +VA  +S
Sbjct: 101 PLFPKGFRNEVQVVATVLS 119


>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
           membrane/ATP-binding component; Reviewed.
          Length = 588

 Score = 25.2 bits (56), Expect = 7.2
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 15/48 (31%)

Query: 11  MEMIEDLHDRY-HYL--IELGKKLPL------FPKEYMTDQNIVAGCM 49
           +E +ED+HD Y  YL  + L   +PL      FP       N  AG +
Sbjct: 127 LEQVEDMHDFYARYLPQMALAVLVPLLILIAVFP------INWAAGLI 168


>gnl|CDD|183385 PRK11929, PRK11929, putative bifunctional
           UDP-N-acetylmuramoylalanyl-D-glutamate--2,
           6-diaminopimelate
           ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-
           alanine ligase; Provisional.
          Length = 958

 Score = 25.0 bits (55), Expect = 8.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 116 LSQKRMNGLYTIVNKIQDLTQEYLNVH 142
           L Q R++GL   V    +LT+++L+ H
Sbjct: 192 LEQGRLDGLRIAVAGFTNLTRDHLDYH 218


>gnl|CDD|178007 PLN02381, PLN02381, valyl-tRNA synthetase.
          Length = 1066

 Score = 24.5 bits (53), Expect = 9.8
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 29  KKLPLFPKEYMTD-----QNIVAGCMSK-LW---MVIEWENKGDQDPIMIFYAVSDSQIV 79
           KKL   PK+Y+ +     +NI   C+S+ LW    +  W    + D +    + +D  +V
Sbjct: 492 KKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYVTLEDDQLKELGSYNDHWVV 551


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,336,222
Number of extensions: 133964
Number of successful extensions: 306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 35
Length of query: 146
Length of database: 5,994,473
Length adjustment: 84
Effective length of query: 62
Effective length of database: 4,179,401
Effective search space: 259122862
Effective search space used: 259122862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.7 bits)