RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780998|ref|YP_003065411.1| hypothetical protein
CLIBASIA_04495 [Candidatus Liberibacter asiaticus str. psy62]
         (146 letters)



>d1ni7a_ d.224.1.1 (A:) Hypothetical protein YgdK {Escherichia coli
           [TaxId: 562]}
          Length = 149

 Score =  133 bits (336), Expect = 6e-33
 Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 4/138 (2%)

Query: 2   IPINDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENK 61
           +    +      +    D+Y  LI LGK+LP  P E       +AGC +++W+       
Sbjct: 15  VTAETLRNTFAPLTQWEDKYRQLIMLGKQLPALPDELKAQAKEIAGCENRVWLGYTV--- 71

Query: 62  GDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQKRM 121
             ++  M F+  S+ +IV GLL ++ +    K  +E+     L +   LGL   LS  R 
Sbjct: 72  -AENGKMHFFGDSEGRIVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSASRS 130

Query: 122 NGLYTIVNKIQDLTQEYL 139
            GL  +   I   T++ L
Sbjct: 131 QGLNALSEAIIAATKQVL 148


>d1mzga_ d.224.1.1 (A:) SufE (YhnA) {Escherichia coli [TaxId: 562]}
          Length = 144

 Score =  126 bits (318), Expect = 8e-31
 Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 1   MIP-INDIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWE 59
           ++P    ++ +     +  ++Y Y+IELG++LP    E  + QN + GC S++W+V+   
Sbjct: 1   LLPDKEKLLRNFLRCANWEEKYLYIIELGQRLPELRDEDRSPQNSIQGCQSQVWIVMRQN 60

Query: 60  NKGDQDPIMIFYAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQK 119
            +G     +     SD+ IV GL+ +V  +Y      +I+  D     + + LT++L+  
Sbjct: 61  AQGI----IELQGDSDAAIVKGLIAVVFILYDQMTPQDIVNFDVRPWFEKMALTQHLTPS 116

Query: 120 RMNGLYTIVNKIQDLTQEY 138
           R  GL  ++  I+      
Sbjct: 117 RSQGLEAMIRAIRAKAAAL 135


>d3b8la1 d.17.4.28 (A:1-144) Uncharacterized protein Saro3538
          {Novosphingobium aromaticivorans [TaxId: 48935]}
          Length = 144

 Score = 27.5 bits (60), Expect = 0.48
 Identities = 8/40 (20%), Positives = 14/40 (35%)

Query: 8  IEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAG 47
          IED   I+DL   Y + ++    +      +  D      
Sbjct: 5  IEDRLAIQDLMIAYAHAVDTVSDIDAVLDVFTEDAVFDLS 44


>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 233

 Score = 25.0 bits (54), Expect = 2.6
 Identities = 21/147 (14%), Positives = 52/147 (35%), Gaps = 9/147 (6%)

Query: 8   IEDMEMIEDLHDRY----HYLIELGKKLPLFPKEYMTDQNIV--AGCMSKLWMVIEWENK 61
            ED   ++  +D        + +  +K+P F +    DQ+++  +  +    + + + +K
Sbjct: 35  KEDAGDVQQFYDLLSGSLEVIRKWAEKIPGFAELSPADQDLLLESAFLELFILRLAYRSK 94

Query: 62  GDQDPIMIF--YAVSDSQIVCGLLYIVKSIYAHKKISEILKMDSLTILQHLGLTENLSQK 119
             +  ++      +   Q   G    + SI A  +    L +D       L     ++ +
Sbjct: 95  PGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRSLHSLLVDV-PAFACLSALVLITDR 153

Query: 120 RMNGLYTIVNKIQDLTQEYLNVHIKER 146
                   V ++Q+     L  H+   
Sbjct: 154 HGLQEPRRVEELQNRIASCLKEHVAAV 180


>d1a3aa_ d.112.1.1 (A:) Phosphotransferase IIa-mannitol {Escherichia
           coli [TaxId: 562]}
          Length = 145

 Score = 24.9 bits (54), Expect = 2.8
 Identities = 10/99 (10%), Positives = 30/99 (30%), Gaps = 4/99 (4%)

Query: 6   DIIEDMEMIEDLHDRYHYLIELGKKLPLFPKEYMTDQNIVAGCMSKLWMVIEWENKGDQD 65
           + ++ M   E L   Y   +     +P    E             +    + +  + D  
Sbjct: 38  EYVQAMLDREKLTPTY---LGESIAVPHGTVEAKDRVLKTGVVFCQYPEGVRFGEEEDDI 94

Query: 66  PIMIFY-AVSDSQIVCGLLYIVKSIYAHKKISEILKMDS 103
             ++   A  +++ +  +  +  ++     I  +    S
Sbjct: 95  ARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTTS 133


>d1ufaa2 c.6.2.4 (A:1-412) Hypothetical protein TT1467, N-terminal
          domain {Thermus thermophilus [TaxId: 274]}
          Length = 412

 Score = 24.7 bits (53), Expect = 3.8
 Identities = 4/29 (13%), Positives = 9/29 (31%)

Query: 11 MEMIEDLHDRYHYLIELGKKLPLFPKEYM 39
           E + D   +  +      +L     +Y 
Sbjct: 64 AEQLADARIKEGFWAYAKDRLERAQGDYQ 92


>d2chca1 d.17.4.25 (A:1-167) Uncharacterized protein Rv3472
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 167

 Score = 24.4 bits (52), Expect = 4.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 1  MIPINDIIEDMEMIEDLHDRYHYLI 25
          M P+++   ++  I+ L  RY   I
Sbjct: 1  MGPVDEQWIEILRIQALCARYCLTI 25


>d1dmua_ c.52.1.4 (A:) Restriction endonuclease BglI {Bacillus
           subtilis [TaxId: 1423]}
          Length = 299

 Score = 23.8 bits (51), Expect = 6.5
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 71  YAVSDSQIVCGLLYIVKSIYAHKKIS 96
           Y +SD  I   +   +K IYA + ++
Sbjct: 199 YILSDGTIAPVVHLFIKPIYAMRSLT 224


>d1p2za1 b.121.2.2 (A:5-650) Adenovirus hexon {Human adenovirus type
           2 [TaxId: 10515]}
          Length = 646

 Score = 23.5 bits (51), Expect = 7.1
 Identities = 3/11 (27%), Positives = 7/11 (63%)

Query: 13  MIEDLHDRYHY 23
           +++ + DR  Y
Sbjct: 380 LLDSIGDRTRY 390


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0470    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 550,443
Number of extensions: 23611
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 22
Length of query: 146
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 69
Effective length of database: 1,350,386
Effective search space: 93176634
Effective search space used: 93176634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.3 bits)