HHsearch alignment for GI: 254780999 and conserved domain: COG0171
>COG0171 NadE NAD synthase [Coenzyme metabolism].
Probab=100.00 E-value=0 Score=504.49 Aligned_cols=253 Identities=46% Similarity=0.680 Sum_probs=236.7
Q ss_pred CHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCC----HHHEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 988864220203588876422454057521587236899999984149----5446797324666652213569999997
Q gi|254780999|r 270 QEEEADYNACVLSLRDYVQKNNFHKVIIGLSGGIDSALCAAIAVDALG----KENVQTIMLPYKYTSPQSLEDAAACAKA 345 (562)
Q Consensus 270 ~~~e~~~~Alvlgl~d~~~~~g~~~~viglSGGiDSal~a~la~~alg----~~~v~~~~mp~~~~s~~s~~~a~~la~~ 345 (562)
T Consensus 3 ~d~~~~~~~~v~fl~~~l~~~~~k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~~~da~~~~~~ 82 (268)
T COG0171 3 IDLEEEINRLVDFLRDYLKKAGFKGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEEDAQDLAEA 82 (268)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCHHHEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 67999999999999999997399986997666819999999999985656512432668678877653479999999998
Q ss_pred HCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCCCCC
Q ss_conf 213542677589999988631323468-7431011012330466779888751695443643244775411023666555
Q gi|254780999|r 346 LGCKYDVLPIHDLVNHFFSLMSQFLQE-EPSGIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISVGYGTLYGDMSG 424 (562)
Q Consensus 346 lg~~~~~i~I~~~~~~~~~~~~~~~~~-~~~~~~~eN~qaR~R~~~L~~~an~~~~lvl~t~nksE~~~Gy~T~~GD~~g 424 (562)
T Consensus 83 lg~~~~~i~I~~~v~~~~~~~~~~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGTgn~sE~~~Gy~TkyGDg~~ 162 (268)
T COG0171 83 LGIDYKEINIKPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGTGNKSELALGYFTKYGDGAV 162 (268)
T ss_pred HCCCEEEEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHCCCEECCCCCCC
T ss_conf 29966997528889998876666523442112777645099999999999855597897588487786074432067644
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC---CCCCCCCC-CHHHHHHHHHHHHHCC
Q ss_conf 4010177633658999999631033222344446688788288988453899---97700068-8788999999998279
Q gi|254780999|r 425 GFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSAELRPH---QTDQESLP-PYPILDDIIKRIVENE 500 (562)
Q Consensus 425 ~~~p~~~l~Kt~v~~la~~~n~~~~~~~~~~~~~~ip~~i~~~~psaeL~~~---Q~ded~l~-~Y~~lD~il~~~i~~~ 500 (562)
T Consensus 163 d~~Pi~~L~KtqV~~La~~l~--------------ipe~I~~k~PTAeL~~~~~~q~DE~~lg~~Y~~lD~~L~~~~~~- 227 (268)
T COG0171 163 DINPIADLYKTQVYALARHLG--------------IPEEILKKPPTADLWPDEPGQTDEAELGMPYEELDDILYGLLEN- 227 (268)
T ss_pred CHHHHCCCCHHHHHHHHHHCC--------------CCHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHH-
T ss_conf 705414875899999998739--------------99999639999112479888877777499999999999976531-
Q ss_pred CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEC---CCCCC
Q ss_conf 997798718999999999999987456687389702472---64537
Q gi|254780999|r 501 ESFINNDQEYNDETVRYVEHLLYGSEYKRRQAPVGTKIT---AKSFG 544 (562)
Q Consensus 501 ~~~~~~~~~~~~~~v~~~~~~~~~~~~KR~~~pp~~~is---~~sfg 544 (562)
T Consensus 228 ------~~~i~~~~~~~i~~~~~~~~~KR~-~p~~~~~~~~~~~~~~ 267 (268)
T COG0171 228 ------GQEISEELVKKIERLYKKSEHKRR-LPIGPKITPWKFLSFG 267 (268)
T ss_pred ------HCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCC
T ss_conf ------112688999999999987776323-9998675422135668