HHsearch alignment for GI: 254780999 and conserved domain: COG0482

>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=99.17  E-value=2.5e-10  Score=86.73  Aligned_cols=150  Identities=23%  Similarity=0.300  Sum_probs=93.1

Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCHHHEEEEECCCCC-------CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH--
Q ss_conf             4540575215872368999999841495446797324666-------6522135699999972135426775899999--
Q gi|254780999|r  291 NFHKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKY-------TSPQSLEDAAACAKALGCKYDVLPIHDLVNH--  361 (562)
Q Consensus       291 g~~~~viglSGGiDSal~a~la~~alg~~~v~~~~mp~~~-------~s~~s~~~a~~la~~lg~~~~~i~I~~~~~~--  361 (562)
T Consensus         2 ~~~kV~v~mSGGVDSSVaA~lLk~Q-Gy-eViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V   79 (356)
T COG0482           2 KKKKVLVGMSGGVDSSVAAYLLKEQ-GY-EVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKV   79 (356)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CC-EEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
T ss_conf             8767999905777899999999976-97-499999996414788867725678999999998099559984689988888


Q ss_pred             HHHHHCCCCCCCCC--CHHHHCCCCHHHHHHHHHHHHHCCCEECCCCC---------HHHHHHH--------HCCCCC--
Q ss_conf             88631323468743--10110123304667798887516954436432---------4477541--------102366--
Q gi|254780999|r  362 FFSLMSQFLQEEPS--GIVAENIQSRIRGNILMALSNHSKAMLLTTSN---------KSEISVG--------YGTLYG--  420 (562)
Q Consensus       362 ~~~~~~~~~~~~~~--~~~~eN~qaR~R~~~L~~~an~~~~lvl~t~n---------ksE~~~G--------y~T~~G--  420 (562)
T Consensus        80 ~~~f~~~Y~~G~TPNPci~C-N~~--iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~KDQsYfL~~~~~  156 (356)
T COG0482          80 FEYFLAEYKAGKTPNPCILC-NKE--IKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLNKDQSYFLYALSQ  156 (356)
T ss_pred             HHHHHHHHHCCCCCCCCHHC-CHH--HHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHEECCCCH
T ss_conf             88778998579999965104-878--899999999997599857874467654377600014678742030002012688


Q ss_pred             C-CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             6-555401017763365899999963
Q gi|254780999|r  421 D-MSGGFNPLKDLYKTQVFQLASWRN  445 (562)
Q Consensus       421 D-~~g~~~p~~~l~Kt~v~~la~~~n  445 (562)
T Consensus       157 ~ql~~~lFPlG~l~K~evR~iA~~~g  182 (356)
T COG0482         157 EQLERLLFPLGDLEKLEVRPIAAEKG  182 (356)
T ss_pred             HHHHHCCCCCCCCCHHHHHHHHHHCC
T ss_conf             77753225677777789999999759