HHsearch alignment for GI: 254780999 and conserved domain: COG0482
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis].
Probab=99.17 E-value=2.5e-10 Score=86.73 Aligned_cols=150 Identities=23% Similarity=0.300 Sum_probs=93.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCHHHEEEEECCCCC-------CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH--
Q ss_conf 4540575215872368999999841495446797324666-------6522135699999972135426775899999--
Q gi|254780999|r 291 NFHKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKY-------TSPQSLEDAAACAKALGCKYDVLPIHDLVNH-- 361 (562)
Q Consensus 291 g~~~~viglSGGiDSal~a~la~~alg~~~v~~~~mp~~~-------~s~~s~~~a~~la~~lg~~~~~i~I~~~~~~-- 361 (562)
T Consensus 2 ~~~kV~v~mSGGVDSSVaA~lLk~Q-Gy-eViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V 79 (356)
T COG0482 2 KKKKVLVGMSGGVDSSVAAYLLKEQ-GY-EVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKV 79 (356)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CC-EEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECHHHHHHHHH
T ss_conf 8767999905777899999999976-97-499999996414788867725678999999998099559984689988888
Q ss_pred HHHHHCCCCCCCCC--CHHHHCCCCHHHHHHHHHHHHHCCCEECCCCC---------HHHHHHH--------HCCCCC--
Q ss_conf 88631323468743--10110123304667798887516954436432---------4477541--------102366--
Q gi|254780999|r 362 FFSLMSQFLQEEPS--GIVAENIQSRIRGNILMALSNHSKAMLLTTSN---------KSEISVG--------YGTLYG-- 420 (562)
Q Consensus 362 ~~~~~~~~~~~~~~--~~~~eN~qaR~R~~~L~~~an~~~~lvl~t~n---------ksE~~~G--------y~T~~G-- 420 (562)
T Consensus 80 ~~~f~~~Y~~G~TPNPci~C-N~~--iKF~~~l~~a~~lgad~iATGHYar~~~~~~~~~l~r~~D~~KDQsYfL~~~~~ 156 (356)
T COG0482 80 FEYFLAEYKAGKTPNPCILC-NKE--IKFKALLDYAKELGADYIATGHYARQREDEGIELLLRGVDLNKDQSYFLYALSQ 156 (356)
T ss_pred HHHHHHHHHCCCCCCCCHHC-CHH--HHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHEECCCCH
T ss_conf 88778998579999965104-878--899999999997599857874467654377600014678742030002012688
Q ss_pred C-CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6-555401017763365899999963
Q gi|254780999|r 421 D-MSGGFNPLKDLYKTQVFQLASWRN 445 (562)
Q Consensus 421 D-~~g~~~p~~~l~Kt~v~~la~~~n 445 (562)
T Consensus 157 ~ql~~~lFPlG~l~K~evR~iA~~~g 182 (356)
T COG0482 157 EQLERLLFPLGDLEKLEVRPIAAEKG 182 (356)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHCC
T ss_conf 77753225677777789999999759