HHsearch alignment for GI: 254780999 and conserved domain: PRK00143
>PRK00143 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Reviewed.
Probab=99.39 E-value=3.2e-12 Score=99.15 Aligned_cols=150 Identities=21% Similarity=0.278 Sum_probs=99.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCHHHEEEEECCCC--------CCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 454057521587236899999984149544679732466--------665221356999999721354267758999998
Q gi|254780999|r 291 NFHKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYK--------YTSPQSLEDAAACAKALGCKYDVLPIHDLVNHF 362 (562)
Q Consensus 291 g~~~~viglSGGiDSal~a~la~~alg~~~v~~~~mp~~--------~~s~~s~~~a~~la~~lg~~~~~i~I~~~~~~~ 362 (562)
T Consensus 3 sk~rV~VamSGGVDSsVaA~LL~~~-Gy-~V~Gv~m~~w~~~~~~~~C~~~~d~~dA~~va~~LgIp~~v~d~~~~f~~~ 80 (355)
T PRK00143 3 SKKRVVVGMSGGVDSSVAAALLKEQ-GY-DVIGLFMKLWDDDDGSGGCCAEEDIADARAVADKLGIPLYVVDFAKEFWDN 80 (355)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHC-CC-CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHH
T ss_conf 8888999916789999999999977-99-589999988768877789985788999999999869857996869987678
Q ss_pred --HHHHCCCCCCCCC--CHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCHHHHHH--HHCCC-CC-C----C--------
Q ss_conf --8631323468743--10110123304667798887516954436432447754--11023-66-6----5--------
Q gi|254780999|r 363 --FSLMSQFLQEEPS--GIVAENIQSRIRGNILMALSNHSKAMLLTTSNKSEISV--GYGTL-YG-D----M-------- 422 (562)
Q Consensus 363 --~~~~~~~~~~~~~--~~~~eN~qaR~R~~~L~~~an~~~~lvl~t~nksE~~~--Gy~T~-~G-D----~-------- 422 (562)
T Consensus 81 Vi~~f~~~Y~~G~TPNPcv~-CN--~~IKFg~l~~~A~~lgad~iATGHYAri~~~~~~~~L~r~~D~~KDQSYfL~~l~ 157 (355)
T PRK00143 81 VFDYFLDEYKAGRTPNPCVL-CN--KEIKFKAFLDYALELGADYIATGHYARIRDEDGRYELLRAVDPNKDQSYFLYQLT 157 (355)
T ss_pred HHHHHHHHHHCCCCCCCCHH-CC--CCCCHHHHHHHHHHCCCCEECCCCEEEEEECCCEEEEEECCCCCCCCEEEEECCC
T ss_conf 89999999976999997334-08--7233999999998739984233525999915981899867889887205761057
Q ss_pred ----CCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf ----55401017763365899999963
Q gi|254780999|r 423 ----SGGFNPLKDLYKTQVFQLASWRN 445 (562)
Q Consensus 423 ----~g~~~p~~~l~Kt~v~~la~~~n 445 (562)
T Consensus 158 ~~~L~~~~FPLG~~~K~eVR~iA~~~g 184 (355)
T PRK00143 158 QEQLAKLLFPLGELTKPEVREIAAEIG 184 (355)
T ss_pred HHHHHHEECCCCCCCHHHHHHHHHHCC
T ss_conf 988742075876773589999999758