HHsearch alignment for GI: 254780999 and conserved domain: PRK00876
>PRK00876 nadE NAD synthetase; Reviewed.
Probab=100.00 E-value=0 Score=457.63 Aligned_cols=241 Identities=28% Similarity=0.381 Sum_probs=210.4
Q ss_pred HHHHCCHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 864220203588876422-4540575215872368999999841495446797324666652213569999997213542
Q gi|254780999|r 273 EADYNACVLSLRDYVQKN-NFHKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKALGCKYD 351 (562)
Q Consensus 273 e~~~~Alvlgl~d~~~~~-g~~~~viglSGGiDSal~a~la~~alg~~~v~~~~mp~~~~s~~s~~~a~~la~~lg~~~~ 351 (562)
T Consensus 13 ~~e~~riv~fir~~v~~~~~~kG~VlGlSGGIDSAv~a~Lav~AlG~e~V~gl~MP~~~s~~~s~~~a~~la~~lGi~~~ 92 (325)
T PRK00876 13 AAEAERIRAFIREQVLGTLKRRGVVLGLSGGIDSSVTLALCVRALGKDRVLGLLMPERDSSPDSLRLGRMLAESLGVEYV 92 (325)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 99999999999999985169867999687688899999999997485516999788656887789999999998199359
Q ss_pred CCCHHHHHHHHH------HHH---CCC--------------CCC---------------C-----------CCCHHHHCC
Q ss_conf 677589999988------631---323--------------468---------------7-----------431011012
Q gi|254780999|r 352 VLPIHDLVNHFF------SLM---SQF--------------LQE---------------E-----------PSGIVAENI 382 (562)
Q Consensus 352 ~i~I~~~~~~~~------~~~---~~~--------------~~~---------------~-----------~~~~~~eN~ 382 (562)
T Consensus 93 ~idI~~~l~~~~~y~~~d~~i~~~~p~~~~~~~~~i~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~~a~~Ni 172 (325)
T PRK00876 93 VEDISPALEALGCYERRDEAIRRVVPEYGPGWKSKLVLPNFLEGDLLNVPYLVVQDPGGEVRKKRLPPADYLQIVAATNF 172 (325)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCHHCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCH
T ss_conf 98448999875431356888875033324200000002311102322310121046421000013550344445553233
Q ss_pred CCHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 33046677988875169544364324477541102366655540101776336589999996310332223444466887
Q gi|254780999|r 383 QSRIRGNILMALSNHSKAMLLTTSNKSEISVGYGTLYGDMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPP 462 (562)
Q Consensus 383 qaR~R~~~L~~~an~~~~lvl~t~nksE~~~Gy~T~~GD~~g~~~p~~~l~Kt~v~~la~~~n~~~~~~~~~~~~~~ip~ 462 (562)
T Consensus 173 KaR~RM~~lY~~A~~~n~lVlGT~NksE~~~GyfTKyGDGa~Di~PI~~LyKtQV~~LA~~Lg--------------vPe 238 (325)
T PRK00876 173 KQRTRKMVEYYHADRLNYAVAGTPNRLEYDQGFFVKYGDGAADLKPIAHLYKTQVYALAEYLG--------------VPE 238 (325)
T ss_pred HHHHHHHHHHHHHHHCCCEEECCCCHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCC--------------CCH
T ss_conf 689999999999987398776588465566351475447887845135775899999999809--------------999
Q ss_pred HHCCCCCCCCCCCCCCCCCCC--C-CHHHHHHHHHHHHHCCCCHHHHHH--CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 882889884538999770006--8-878899999999827999779871--89999999999999874566873
Q gi|254780999|r 463 SILEKSPSAELRPHQTDQESL--P-PYPILDDIIKRIVENEESFINNDQ--EYNDETVRYVEHLLYGSEYKRRQ 531 (562)
Q Consensus 463 ~i~~~~psaeL~~~Q~ded~l--~-~Y~~lD~il~~~i~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~KR~~ 531 (562)
T Consensus 239 ~Ii~K~PSadLw~~~~~edE~~~g~~Y~~lD~~L~~~-~~~~~~~~~~~~~g~~~e~v~~v~~~i---~~kr~~ 308 (325)
T PRK00876 239 EIRRRPPTTDTYSLYQTQEEFYFRLPYDIMDLCLYAQ-NHGVPAEVVAAALGLTPEQVERVWRDI---EAKRRT 308 (325)
T ss_pred HHHCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHH---HHHHHH
T ss_conf 9936999813358999724540599889999999987-649999999988398999999999999---987530