HHsearch alignment for GI: 254780999 and conserved domain: PRK00876

>PRK00876 nadE NAD synthetase; Reviewed.
Probab=100.00  E-value=0  Score=457.63  Aligned_cols=241  Identities=28%  Similarity=0.381  Sum_probs=210.4

Q ss_pred             HHHHCCHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHCCCHHHEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             864220203588876422-4540575215872368999999841495446797324666652213569999997213542
Q gi|254780999|r  273 EADYNACVLSLRDYVQKN-NFHKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSPQSLEDAAACAKALGCKYD  351 (562)
Q Consensus       273 e~~~~Alvlgl~d~~~~~-g~~~~viglSGGiDSal~a~la~~alg~~~v~~~~mp~~~~s~~s~~~a~~la~~lg~~~~  351 (562)
T Consensus        13 ~~e~~riv~fir~~v~~~~~~kG~VlGlSGGIDSAv~a~Lav~AlG~e~V~gl~MP~~~s~~~s~~~a~~la~~lGi~~~   92 (325)
T PRK00876         13 AAEAERIRAFIREQVLGTLKRRGVVLGLSGGIDSSVTLALCVRALGKDRVLGLLMPERDSSPDSLRLGRMLAESLGVEYV   92 (325)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf             99999999999999985169867999687688899999999997485516999788656887789999999998199359


Q ss_pred             CCCHHHHHHHHH------HHH---CCC--------------CCC---------------C-----------CCCHHHHCC
Q ss_conf             677589999988------631---323--------------468---------------7-----------431011012
Q gi|254780999|r  352 VLPIHDLVNHFF------SLM---SQF--------------LQE---------------E-----------PSGIVAENI  382 (562)
Q Consensus       352 ~i~I~~~~~~~~------~~~---~~~--------------~~~---------------~-----------~~~~~~eN~  382 (562)
T Consensus        93 ~idI~~~l~~~~~y~~~d~~i~~~~p~~~~~~~~~i~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~l~~~a~~Ni  172 (325)
T PRK00876         93 VEDISPALEALGCYERRDEAIRRVVPEYGPGWKSKLVLPNFLEGDLLNVPYLVVQDPGGEVRKKRLPPADYLQIVAATNF  172 (325)
T ss_pred             EEECHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCHHCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCH
T ss_conf             98448999875431356888875033324200000002311102322310121046421000013550344445553233


Q ss_pred             CCHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf             33046677988875169544364324477541102366655540101776336589999996310332223444466887
Q gi|254780999|r  383 QSRIRGNILMALSNHSKAMLLTTSNKSEISVGYGTLYGDMSGGFNPLKDLYKTQVFQLASWRNSHGITSGLGPLTEVIPP  462 (562)
Q Consensus       383 qaR~R~~~L~~~an~~~~lvl~t~nksE~~~Gy~T~~GD~~g~~~p~~~l~Kt~v~~la~~~n~~~~~~~~~~~~~~ip~  462 (562)
T Consensus       173 KaR~RM~~lY~~A~~~n~lVlGT~NksE~~~GyfTKyGDGa~Di~PI~~LyKtQV~~LA~~Lg--------------vPe  238 (325)
T PRK00876        173 KQRTRKMVEYYHADRLNYAVAGTPNRLEYDQGFFVKYGDGAADLKPIAHLYKTQVYALAEYLG--------------VPE  238 (325)
T ss_pred             HHHHHHHHHHHHHHHCCCEEECCCCHHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCC--------------CCH
T ss_conf             689999999999987398776588465566351475447887845135775899999999809--------------999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCC--C-CHHHHHHHHHHHHHCCCCHHHHHH--CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             882889884538999770006--8-878899999999827999779871--89999999999999874566873
Q gi|254780999|r  463 SILEKSPSAELRPHQTDQESL--P-PYPILDDIIKRIVENEESFINNDQ--EYNDETVRYVEHLLYGSEYKRRQ  531 (562)
Q Consensus       463 ~i~~~~psaeL~~~Q~ded~l--~-~Y~~lD~il~~~i~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~KR~~  531 (562)
T Consensus       239 ~Ii~K~PSadLw~~~~~edE~~~g~~Y~~lD~~L~~~-~~~~~~~~~~~~~g~~~e~v~~v~~~i---~~kr~~  308 (325)
T PRK00876        239 EIRRRPPTTDTYSLYQTQEEFYFRLPYDIMDLCLYAQ-NHGVPAEVVAAALGLTPEQVERVWRDI---EAKRRT  308 (325)
T ss_pred             HHHCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHH---HHHHHH
T ss_conf             9936999813358999724540599889999999987-649999999988398999999999999---987530