HHsearch alignment for GI: 254780999 and conserved domain: TIGR00268
>TIGR00268 TIGR00268 conserved hypothetical protein TIGR00268; InterPro: IPR005232 This family of conserved hypothetical proteins has no known function but is predicted to be part of the wider PP-loop superfamily ..
Probab=99.22 E-value=4.4e-11 Score=91.69 Aligned_cols=213 Identities=23% Similarity=0.342 Sum_probs=135.2
Q ss_pred HHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHCCCHHHEEEEECCCCCCCC-CCHHHHHHHHHHHCCCCCCCCHHHHH-
Q ss_conf 8887642-24540575215872368999999841495446797324666652-21356999999721354267758999-
Q gi|254780999|r 283 LRDYVQK-NNFHKVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYKYTSP-QSLEDAAACAKALGCKYDVLPIHDLV- 359 (562)
Q Consensus 283 l~d~~~~-~g~~~~viglSGGiDSal~a~la~~alg~~~v~~~~mp~~~~s~-~s~~~a~~la~~lg~~~~~i~I~~~~- 359 (562)
T Consensus 5 L~~fl~~kf~nk~~~IAySGGvDS~lla~v~~~v~g~-~~lait~~sP~~sp~~el~~A~~~A~~~g~~he~~~~d~~~n 83 (263)
T TIGR00268 5 LRNFLKEKFKNKKVLIAYSGGVDSSLLAAVCSDVAGT-EVLAITVVSPSISPRRELEDAKAIAKEIGVKHELVKIDKMAN 83 (263)
T ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHH-CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC
T ss_conf 8889876764081699951746589999999875310-113578762775735448999999988083012110012368
Q ss_pred HHHHHHHCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCC-EECCCCCHHHHH---HHHCCCCCCCCCCCCCCCC--CC
Q ss_conf 99886313234687431011012330466779888751695-443643244775---4110236665554010177--63
Q gi|254780999|r 360 NHFFSLMSQFLQEEPSGIVAENIQSRIRGNILMALSNHSKA-MLLTTSNKSEIS---VGYGTLYGDMSGGFNPLKD--LY 433 (562)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~eN~qaR~R~~~L~~~an~~~~-lvl~t~nksE~~---~Gy~T~~GD~~g~~~p~~~--l~ 433 (562)
T Consensus 84 ~~f--------~~N~~~RCY-~CK-~~~~~~L~~~a~~~gy~~V~dGtN~dDL~~~RPG~~A~-~E~~g~~SP~aef~I~ 152 (263)
T TIGR00268 84 PNF--------RANVEERCY-FCK-KKVLSILVKLAEKRGYDVVVDGTNADDLEDHRPGLRAV-KELNGVYSPWAEFGIT 152 (263)
T ss_pred CCC--------CCCCCCCCH-HHH-HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH-HHCCCCCCCCCCCCCC
T ss_conf 500--------168854441-548-88999989999863995798234620002367513567-6607886872002568
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCC----CC-CCCCCCCCHHHHH-HHHHHHHHCCC---CHH
Q ss_conf 365899999963103322234444668878828898845389----99-7700068878899-99999982799---977
Q gi|254780999|r 434 KTQVFQLASWRNSHGITSGLGPLTEVIPPSILEKSPSAELRP----HQ-TDQESLPPYPILD-DIIKRIVENEE---SFI 504 (562)
Q Consensus 434 Kt~v~~la~~~n~~~~~~~~~~~~~~ip~~i~~~~psaeL~~----~Q-~ded~l~~Y~~lD-~il~~~i~~~~---~~~ 504 (562)
T Consensus 153 K~eir~ia~~lg~----------------~~~DKP~~~CL~sR~p~g~EI~~ekL~~v~eaE~~~l~~~g~~qvRVR~y~ 216 (263)
T TIGR00268 153 KKEIREIAKSLGL----------------SFYDKPSEACLASRFPFGEEIDVEKLKKVDEAEEIVLRRAGVKQVRVRNYD 216 (263)
T ss_pred HHHHHHHHHHCCC----------------CCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 7999999997488----------------988886621021047687510489877699999999998356605765267
Q ss_pred HHH-HCCCHHHHHHHHHHHH
Q ss_conf 987-1899999999999998
Q gi|254780999|r 505 NND-QEYNDETVRYVEHLLY 523 (562)
Q Consensus 505 ~~~-~~~~~~~v~~~~~~~~ 523 (562)
T Consensus 217 nlAviE~~~~~l~kl~~~~~ 236 (263)
T TIGR00268 217 NLAVIEVAEDELSKLLNEAE 236 (263)
T ss_pred CEEEEEECHHHHHHHHHHHH
T ss_conf 65799628588999986313