HHsearch alignment for GI: 254780999 and conserved domain: cd07565
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=0 Score=328.80 Aligned_cols=238 Identities=15% Similarity=0.133 Sum_probs=195.2
Q ss_pred EEEEEEECCC----CCCCHHHHHHHHHHHHHHHHH--CCCCEEEECCCCCCCCCHHHHHCCHHHHHH-HHHHHHHHHHHH
Q ss_conf 2899996388----368899999999999999998--599899916644479984454148899999-999999999998
Q gi|254780999|r 5 LKIAIAQLNP----VVGDIAGNIAKARRAREEANR--QGMDLILFTELFISGYPPEDLVFKKSFIQA-CSSAIDTLKSDT 77 (562)
Q Consensus 5 mkIal~Q~n~----~~gd~~~N~~~i~~~i~~A~~--~gadLvvfPEl~LtGY~~~Dl~~~~~f~~~-~~~~l~~La~~~ 77 (562)
T Consensus 1 v~va~vQ~~~~~~~~~~dv~~n~~~i~~~i~~a~a~~~GadLIVlPE~~~tG~~~~~~~-~~~~a~~~~Gp~~~~l~~~A 79 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYDKWT-MDETACTVPGPETDIFAEAC 79 (291)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHH-HHHHHHCCCCHHHHHHHHHH
T ss_conf 96999963488889989999999999999999973499986998888655789977678-88754229987999999999
Q ss_pred HHCCCEEEEEEEEEE---CCEEEEEEEEEE-CCEEEEEEEEEEECCCCCCCCCCCCCCCCCCC-EEEE-CCEEEEECCCC
Q ss_conf 876978999999988---898789999996-99799988777623554333210037788876-1476-47456201111
Q gi|254780999|r 78 HDGGAGIVVGFPRQD---QEGVLNSVVILD-AGNIIAVRDKINLPNYSEFHEKRTFISGYSND-PIVF-RDIRLGILICE 151 (562)
Q Consensus 78 ~~~~i~iivG~p~~~---~~~~yNsa~vi~-~G~il~~y~K~~LP~y~~FdE~r~F~~G~~~~-~~~~-~g~kiGv~ICe 151 (562)
T Consensus 80 ~~~~v~iv~g~~E~~~~~~~~~yNtavvid~~G~ii~~YRKiHl~~~----~e~~-~pGd~~~~v~~t~~G~kiGl~ICy 154 (291)
T cd07565 80 KEAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWVP----IEPW-YPGDLGTPVCEGPKGSKIALIICH 154 (291)
T ss_pred HHCCCEEEEEEEEECCCCCCCEEEEEEEECCCCCEEEEECCCCCCCC----CCCC-CCCCCCCEEEECCCCCEEEEEEEC
T ss_conf 86692899986876478789768899999899839989864168887----7784-468887547876898689999863
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEECCCCEEEE
Q ss_conf 11101689999971477759931555333580788878899985433704642135688766210486435558985999
Q gi|254780999|r 152 DIWKNSNICKHLKKQGAEFLFSLNASPYYHNKLKKRHEIVTGQISHVHLPIIYVNQVGGQDELIFDGASFCFDGQQQLAF 231 (562)
Q Consensus 152 Dlw~~~~~~~~la~~Gadlii~psASp~~~~k~~~R~~~~~~~a~e~~~~vvy~N~vGg~d~lvf~G~S~I~d~~G~ii~ 231 (562)
T Consensus 155 D~~FPE-~~R~lal~GAeli~~Psa~~~~~--~~~W~~l~rARAieN~~yvv~~Nr~G~e~~~~f~G~S~IvdP~G~vla 231 (291)
T cd07565 155 DGMYPE-IARECAYKGAELIIRIQGYMYPA--KDQWIITNKANAWCNLMYTASVNLAGFDGVFSYFGESMIVNFDGRTLG 231 (291)
T ss_pred CCCCHH-HHHHHHHCCCEEEEECCCCCCCC--HHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEEEEECCCCCEEE
T ss_conf 424289-99999978994999888789885--178999999999970978999856646898477446699999988877
Q ss_pred ECCCCCCCEEEEEEEECCCC
Q ss_conf 61677763799999833521
Q gi|254780999|r 232 QMKHFSEQNFMTEWHYDQQL 251 (562)
Q Consensus 232 ~~~~f~e~~~i~d~d~d~~~ 251 (562)
T Consensus 232 ~a~~~~eei~~AeiDl~~~~ 251 (291)
T cd07565 232 EGGREPDEIVTAELSPSLVR 251 (291)
T ss_pred ECCCCCCEEEEEEECHHHHH
T ss_conf 75799987999998789999