HHsearch alignment for GI: 254781000 and conserved domain: COG0030

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=97.82  E-value=0.00038  Score=46.29  Aligned_cols=151  Identities=19%  Similarity=0.234  Sum_probs=100.1

Q ss_pred             HHHHHHHEEECCCCCC-CEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH
Q ss_conf             7755442011147788-338860246423588885068569984475889999999788608996499976899998988
Q gi|254781000|r  195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM  273 (371)
Q Consensus       195 ~~~l~~~v~~~~~~~~-~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~  273 (371)
T Consensus        15 d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d---   89 (259)
T COG0030          15 DKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFD---   89 (259)
T ss_pred             CHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEECHHHHHHHHHHHC--CCCCEEEEECCHHCCC---
T ss_conf             78799999985578999869997898778899999606957999968899999997506--5665599947242475---


Q ss_pred             HHCCCCCCCCCCHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCC----EEEEECCHHHHHHH------------HHHHCC
Q ss_conf             62332222321010147877999869702634899999853994----89992998999886------------998426
Q gi|254781000|r  274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH----ILYISCNPDSLCRD------------LSILST  337 (371)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~----ivYVSCnp~TlarD------------~~~l~~  337 (371)
T Consensus        90 -----~~~l~-------~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~QkE---vaeRl~A~pgsk~Yg~LsV~~q  154 (259)
T COG0030          90 -----FPSLA-------QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQKE---VAERLVAKPGSKDYGRLSVLVQ  154 (259)
T ss_pred             -----CHHHC-------CCCEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEEHHH---HHHHHHCCCCCCCCCHHHHHHE
T ss_conf             -----13515-------78889980897656799999984667654289982999---9999717889865206655401


Q ss_pred             -CCEEEEEEE---EECCCCCCCEEE-EEEEEECC
Q ss_conf             -967999999---717989872489-99999856
Q gi|254781000|r  338 -THTIERLAL---FDQFPYTRHMEC-GVLLVRKP  366 (371)
Q Consensus       338 -gy~i~~~~~---~D~FP~T~HvE~-v~~l~R~~  366 (371)
T Consensus       155 ~~~~v~~~~~Vpp~~F~P~-PkVdSavv~L~~~~  187 (259)
T COG0030         155 YYADVEIVFDVPPSAFYPP-PKVDSAVVRLVPKK  187 (259)
T ss_pred             EEEEEEEEEEECHHHCCCC-CCCCEEEEEEEECC
T ss_conf             0588899988775658999-97527999999678