HHsearch alignment for GI: 254781000 and conserved domain: COG0030
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=97.82 E-value=0.00038 Score=46.29 Aligned_cols=151 Identities=19% Similarity=0.234 Sum_probs=100.1
Q ss_pred HHHHHHHEEECCCCCC-CEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHH
Q ss_conf 7755442011147788-338860246423588885068569984475889999999788608996499976899998988
Q gi|254781000|r 195 NVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAM 273 (371)
Q Consensus 195 ~~~l~~~v~~~~~~~~-~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~ 273 (371)
T Consensus 15 d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d--- 89 (259)
T COG0030 15 DKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFD--- 89 (259)
T ss_pred CHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEECHHHHHHHHHHHC--CCCCEEEEECCHHCCC---
T ss_conf 78799999985578999869997898778899999606957999968899999997506--5665599947242475---
Q ss_pred HHCCCCCCCCCCHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCC----EEEEECCHHHHHHH------------HHHHCC
Q ss_conf 62332222321010147877999869702634899999853994----89992998999886------------998426
Q gi|254781000|r 274 RREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH----ILYISCNPDSLCRD------------LSILST 337 (371)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~----ivYVSCnp~TlarD------------~~~l~~ 337 (371)
T Consensus 90 -----~~~l~-------~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~QkE---vaeRl~A~pgsk~Yg~LsV~~q 154 (259)
T COG0030 90 -----FPSLA-------QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQKE---VAERLVAKPGSKDYGRLSVLVQ 154 (259)
T ss_pred -----CHHHC-------CCCEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEEHHH---HHHHHHCCCCCCCCCHHHHHHE
T ss_conf -----13515-------78889980897656799999984667654289982999---9999717889865206655401
Q ss_pred -CCEEEEEEE---EECCCCCCCEEE-EEEEEECC
Q ss_conf -967999999---717989872489-99999856
Q gi|254781000|r 338 -THTIERLAL---FDQFPYTRHMEC-GVLLVRKP 366 (371)
Q Consensus 338 -gy~i~~~~~---~D~FP~T~HvE~-v~~l~R~~ 366 (371)
T Consensus 155 ~~~~v~~~~~Vpp~~F~P~-PkVdSavv~L~~~~ 187 (259)
T COG0030 155 YYADVEIVFDVPPSAFYPP-PKVDSAVVRLVPKK 187 (259)
T ss_pred EEEEEEEEEEECHHHCCCC-CCCCEEEEEEEECC
T ss_conf 0588899988775658999-97527999999678