HHsearch alignment for GI: 254781000 and conserved domain: COG1041
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair].
Probab=98.67 E-value=3.1e-08 Score=72.90 Aligned_cols=154 Identities=14% Similarity=0.235 Sum_probs=96.5
Q ss_pred HHHHCC---CHHHHHHHHHHEEECCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 133123---57787755442011147788338860246423588885068569984475889999999788608996499
Q gi|254781000|r 185 NSFTQP---NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKI 261 (371)
Q Consensus 185 ~sFfQ~---N~~~~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f 261 (371)
T Consensus 173 RPf~~p~s~~P~lAR~mVNLa~--v~-~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~ 249 (347)
T COG1041 173 RPFFRPGSMDPRLARAMVNLAR--VK-RGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPV 249 (347)
T ss_pred CCCCCCCCCCHHHHHHHHHHHC--CC-CCCEEECCCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 9856768859899999877741--64-69876457678348888366427567603237999855664156627676168
Q ss_pred EEC-CHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCC---CCH-----HHHHHHHH----HCC---CCEEEEECCH
Q ss_conf 976-8999989886233222232101014787799986970---263-----48999998----539---9489992998
Q gi|254781000|r 262 VRM-SSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR---SGL-----DDATVGMV----QAY---PHILYISCNP 325 (371)
Q Consensus 262 ~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR---~G~-----~~~~~~~~----~~~---~~ivYVSCnp 325 (371)
T Consensus 250 ~~~~Da~~lp----------------l~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p-- 311 (347)
T COG1041 250 LKVLDATNLP----------------LRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP-- 311 (347)
T ss_pred EEECCCCCCC----------------CCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC--
T ss_conf 8730221277----------------8877423588469987100245552899999999999987304848999617--
Q ss_pred HHHHHHHH-HHCCCCEEEEEEEEECCCCCCCEEEEEEEEE
Q ss_conf 99988699-8426967999999717989872489999998
Q gi|254781000|r 326 DSLCRDLS-ILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 (371)
Q Consensus 326 ~TlarD~~-~l~~gy~i~~~~~~D~FP~T~HvE~v~~l~R 364 (371)
T Consensus 312 ---~~~~~~~~~~~f~v~~--~~~~~~H~sLtR~i~v~~~ 346 (347)
T COG1041 312 ---RDPRHELEELGFKVLG--RFTMRVHGSLTRVIYVVRK 346 (347)
T ss_pred ---CCCHHHHHHCCCEEEE--EEEEEECCCEEEEEEEEEC
T ss_conf ---8605567643965999--9977641746899999862