HHsearch alignment for GI: 254781000 and conserved domain: COG2264
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis].
Probab=98.84 E-value=1.2e-08 Score=75.68 Aligned_cols=150 Identities=16% Similarity=0.106 Sum_probs=85.9
Q ss_pred EEEEEECCH-HHHCCCHHHHHHHHHHEEECCCCCCCEEEEECCCCCHHHHHHHH-CCCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 279997641-33123577877554420111477883388602464235888850-6856998447588999999978860
Q gi|254781000|r 177 TLIYRQIEN-SFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAAN 254 (371)
Q Consensus 177 ~~~f~i~p~-sFfQ~N~~~~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl~La~-~~~~V~gvE~~~~ai~~A~~Na~~N 254 (371)
T Consensus 130 ~~~i~lDPGlAFGTG~Hp-TT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N 208 (300)
T COG2264 130 ELNIELDPGLAFGTGTHP-TTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLN 208 (300)
T ss_pred CEEEEECCCCCCCCCCCH-HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHC
T ss_conf 269997573336788780-1799999999860589879982678159999999819866899718889999999999976
Q ss_pred CCCC-EEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCCCCHHHHHHHHHH---CCCCEEEEECCHHHHHH
Q ss_conf 8996-4999768999989886233222232101014787799986970263489999985---39948999299899988
Q gi|254781000|r 255 HVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYPHILYISCNPDSLCR 330 (371)
Q Consensus 255 ~i~n-~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~---~~~~ivYVSCnp~Tlar 330 (371)
T Consensus 209 ~v~~~~~~~~~~-----------------~~~~~~~~~~DvIVANI-LA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~ 270 (300)
T COG2264 209 GVELLVQAKGFL-----------------LLEVPENGPFDVIVANI-LAEVLVELAPDIKRLLKPGGRLILSGILEDQAE 270 (300)
T ss_pred CCCHHHHCCCCC-----------------CHHHCCCCCCCEEEEHH-HHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHH
T ss_conf 996022003456-----------------30001368656898605-278999999999987088936999862075899
Q ss_pred HHH-HH-CCCCEEEEEE
Q ss_conf 699-84-2696799999
Q gi|254781000|r 331 DLS-IL-STTHTIERLA 345 (371)
Q Consensus 331 D~~-~l-~~gy~i~~~~ 345 (371)
T Consensus 271 ~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 271 SVAEAYEQAGFEVVEVL 287 (300)
T ss_pred HHHHHHHHCCCEEEEEE
T ss_conf 99999985897686897