HHsearch alignment for GI: 254781000 and conserved domain: COG2519
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis].
Probab=98.08 E-value=3.2e-05 Score=53.28 Aligned_cols=101 Identities=21% Similarity=0.194 Sum_probs=74.3
Q ss_pred ECCCCCC-CEEEEECCCCCHHHHHHHH---CCCEEEEECCCHHHHHHHHHHHHHCCCCC-EEEEECCHHHHHHHHHHCCC
Q ss_conf 1147788-3388602464235888850---68569984475889999999788608996-49997689999898862332
Q gi|254781000|r 204 AATKGIQ-GDLLELYCGNGNFSLVLAR---HFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRRERE 278 (371)
Q Consensus 204 ~~~~~~~-~~vlDLycG~G~fsl~La~---~~~~V~gvE~~~~ai~~A~~Na~~N~i~n-~~f~~~~a~~~~~~~~~~~~ 278 (371)
T Consensus 88 ~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~------- 160 (256)
T COG2519 88 ARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID------- 160 (256)
T ss_pred HHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-------
T ss_conf 8709998878998156805999999996488845999995278999999999984245613787054000246-------
Q ss_pred CCCCCCCHHCCCCCCEEEECCCCCCHHHHHHHHHH---CCC--CEEEEECC
Q ss_conf 22232101014787799986970263489999985---399--48999299
Q gi|254781000|r 279 FNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ---AYP--HILYISCN 324 (371)
Q Consensus 279 ~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~---~~~--~ivYVSCn 324 (371)
T Consensus 161 ----------~~~vDav~LDmp~P---W~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 161 ----------EEDVDAVFLDLPDP---WNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred ----------CCCCCEEEECCCCH---HHHHHHHHHHHCCCCEEEEECCCH
T ss_conf ----------55467799758984---899999998717996799983978