HHsearch alignment for GI: 254781000 and conserved domain: COG2813

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].
Probab=99.11  E-value=4.6e-10  Score=84.82  Aligned_cols=111  Identities=29%  Similarity=0.494  Sum_probs=83.1

Q ss_pred             CCEEEEEECCHHHHCCCHHH-HHHHHHHEEECCCCCCCEEEEECCCCCHHHHHHHHCC--CEEEEECCCHHHHHHHHHHH
Q ss_conf             91279997641331235778-7755442011147788338860246423588885068--56998447588999999978
Q gi|254781000|r  175 GRTLIYRQIENSFTQPNAGI-NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNI  251 (371)
Q Consensus       175 ~~~~~f~i~p~sFfQ~N~~~-~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~Na  251 (371)
T Consensus       126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl  202 (300)
T COG2813         126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPD---LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNL  202 (300)
T ss_pred             CCCEEEEECCCCCCCCCCCHHHHHHHHHCCCC---CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
T ss_conf             67526994898775988683889999737755---699688707884299999998689872899826699999988769


Q ss_pred             HHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCC-CCCHHH
Q ss_conf             8608996499976899998988623322223210101478779998697-026348
Q gi|254781000|r  252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDD  306 (371)
Q Consensus       252 ~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPP-R~G~~~  306 (371)
T Consensus       203 ~~N~~~~~~v~~s~~~~~-----------------v~~-kfd~IisNPPfh~G~~v  240 (300)
T COG2813         203 AANGVENTEVWASNLYEP-----------------VEG-KFDLIISNPPFHAGKAV  240 (300)
T ss_pred             HHCCCCCCEEEEECCCCC-----------------CCC-CCCEEEECCCCCCCCCH
T ss_conf             973987637998124466-----------------544-00689848884677101