HHsearch alignment for GI: 254781000 and conserved domain: COG2813
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].
Probab=99.11 E-value=4.6e-10 Score=84.82 Aligned_cols=111 Identities=29% Similarity=0.494 Sum_probs=83.1
Q ss_pred CCEEEEEECCHHHHCCCHHH-HHHHHHHEEECCCCCCCEEEEECCCCCHHHHHHHHCC--CEEEEECCCHHHHHHHHHHH
Q ss_conf 91279997641331235778-7755442011147788338860246423588885068--56998447588999999978
Q gi|254781000|r 175 GRTLIYRQIENSFTQPNAGI-NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNI 251 (371)
Q Consensus 175 ~~~~~f~i~p~sFfQ~N~~~-~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~Na 251 (371)
T Consensus 126 ~~~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl 202 (300)
T COG2813 126 GHELTFKTLPGVFSRDKLDKGSRLLLETLPPD---LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNL 202 (300)
T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHCCCC---CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 67526994898775988683889999737755---699688707884299999998689872899826699999988769
Q ss_pred HHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCC-CCCHHH
Q ss_conf 8608996499976899998988623322223210101478779998697-026348
Q gi|254781000|r 252 AANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDD 306 (371)
Q Consensus 252 ~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPP-R~G~~~ 306 (371)
T Consensus 203 ~~N~~~~~~v~~s~~~~~-----------------v~~-kfd~IisNPPfh~G~~v 240 (300)
T COG2813 203 AANGVENTEVWASNLYEP-----------------VEG-KFDLIISNPPFHAGKAV 240 (300)
T ss_pred HHCCCCCCEEEEECCCCC-----------------CCC-CCCEEEECCCCCCCCCH
T ss_conf 973987637998124466-----------------544-00689848884677101