HHsearch alignment for GI: 254781000 and conserved domain: COG2961
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only].
Probab=94.73 E-value=0.18 Score=28.85 Aligned_cols=123 Identities=20% Similarity=0.164 Sum_probs=77.9
Q ss_pred HHHHHHHHHEEECCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHH
Q ss_conf 78775544201114778833886024642358888506856998447588999999978860899649997689999898
Q gi|254781000|r 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272 (371)
Q Consensus 193 ~~~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~ 272 (371)
T Consensus 75 a~l~~yl~~i~~lN-~~~--~l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a 149 (279)
T COG2961 75 AELEPYLDAVRQLN-PGG--GLRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKA 149 (279)
T ss_pred HHHHHHHHHHHHHC-CCC--CCCCCCCCHHHHHHHCCHHCEEEEEECCCCHHHHHHHHHC--CCCCEEEEECCCHHHHHH
T ss_conf 99999999999748-788--8045899989999871401003320048457999997627--784147883471888862
Q ss_pred HHHCCCCCCCCCCHHCCCCCCEEEECCCCCCHH--HHHHHHH----HCCCCEEEEECCHHHHHHHH
Q ss_conf 862332222321010147877999869702634--8999998----53994899929989998869
Q gi|254781000|r 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD--DATVGMV----QAYPHILYISCNPDSLCRDL 332 (371)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~--~~~~~~~----~~~~~ivYVSCnp~TlarD~ 332 (371)
T Consensus 150 ~LPP~------------erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~ 203 (279)
T COG2961 150 HLPPK------------ERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQI 203 (279)
T ss_pred HCCCC------------CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHH
T ss_conf 18997------------7625899589866621799999999999986248659999760034899