HHsearch alignment for GI: 254781000 and conserved domain: KOG1500

Probab=96.81  E-value=0.0049  Score=39.04  Aligned_cols=77  Identities=23%  Similarity=0.353  Sum_probs=56.3

Q ss_pred             CCE-EEEECCCCCHHHHHHHH-CCCEEEEECCCHHHHHHHHHHHHHCCCCC-EEEEECCHHHHHHHHHHCCCCCCCCCCH
Q ss_conf             833-88602464235888850-68569984475889999999788608996-4999768999989886233222232101
Q gi|254781000|r  210 QGD-LLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDID  286 (371)
Q Consensus       210 ~~~-vlDLycG~G~fsl~La~-~~~~V~gvE~~~~ai~~A~~Na~~N~i~n-~~f~~~~a~~~~~~~~~~~~~~~~~~~~  286 (371)
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MA-qyA~~Lv~~N~~~~rItVI~GKiEdie-----------LP---  241 (517)
T KOG1500         177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMA-QYARKLVASNNLADRITVIPGKIEDIE-----------LP---  241 (517)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCCEEEEEEHHHHH-HHHHHHHHCCCCCCEEEECCCCCCEEC-----------CC---
T ss_conf             774899815882489999987386538987456799-999998743663203787056320103-----------75---


Q ss_pred             HCCCCCCEEEECCCCCCH
Q ss_conf             014787799986970263
Q gi|254781000|r  287 IHSYRFKTIFVDPPRSGL  304 (371)
Q Consensus       287 ~~~~~~d~vilDPPR~G~  304 (371)
T Consensus       242 ---Ek~DviISEPMG~mL  256 (517)
T KOG1500         242 ---EKVDVIISEPMGYML  256 (517)
T ss_pred             ---CCCCEEEECCCHHHH
T ss_conf             ---103478725621411