HHsearch alignment for GI: 254781000 and conserved domain: PRK10901

>PRK10901 16S rRNA methyltransferase B; Provisional.
Probab=98.92  E-value=7.8e-08  Score=70.32  Aligned_cols=146  Identities=14%  Similarity=0.172  Sum_probs=95.9

Q ss_pred             CCCCCC-CEEEEECCCCCHHHHHHHHCC--CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCC
Q ss_conf             147788-338860246423588885068--56998447588999999978860899649997689999898862332222
Q gi|254781000|r  205 ATKGIQ-GDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNR  281 (371)
Q Consensus       205 ~~~~~~-~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~  281 (371)
T Consensus       240 ll~p~~g~~VLD~CAaPGGKt~~la~~~~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~-~~v~~~d~~~~-~----------  307 (428)
T PRK10901        240 LLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYP-S----------  307 (428)
T ss_pred             HCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCC-EEEEECCCCCH-H----------
T ss_conf             64988898798716887668999999645892899969888999999999975997-39997765572-3----------


Q ss_pred             CCCCHHCCCCCCEEEECCCCCCHHH--------------HHHH-------HHH----CC-C--CEEEEECCHHHHH--HH
Q ss_conf             3210101478779998697026348--------------9999-------985----39-9--4899929989998--86
Q gi|254781000|r  282 LKDIDIHSYRFKTIFVDPPRSGLDD--------------ATVG-------MVQ----AY-P--HILYISCNPDSLC--RD  331 (371)
Q Consensus       282 ~~~~~~~~~~~d~vilDPPR~G~~~--------------~~~~-------~~~----~~-~--~ivYVSCnp~Tla--rD  331 (371)
T Consensus       308 ---~~~~~~~fD~ILlDaPCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvYsTCSi~~eENe~~  384 (428)
T PRK10901        308 ---QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSQQ  384 (428)
T ss_pred             ---HHCCCCCCCEEEECCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
T ss_conf             ---31344567879975898887244468542112899999999999999999999866889889999899995778999


Q ss_pred             HH-HHC--CCCEEEEEEE-----EECCCCCCCEEE--EEEEEEC
Q ss_conf             99-842--6967999999-----717989872489--9999985
Q gi|254781000|r  332 LS-ILS--TTHTIERLAL-----FDQFPYTRHMEC--GVLLVRK  365 (371)
Q Consensus       332 ~~-~l~--~gy~i~~~~~-----~D~FP~T~HvE~--v~~l~R~  365 (371)
T Consensus       385 I~~FL~~~~d~~l~~~~~~~~~~~~~~P~~~~~DGFf~a~L~kk  428 (428)
T PRK10901        385 IKAFLQRTPDAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIKK  428 (428)
T ss_pred             HHHHHHHCCCCEECCCCCCCCCCEEECCCCCCCCCEEEEEEEEC
T ss_conf             99999859997860677889998788999999873799999849