HHsearch alignment for GI: 254781000 and conserved domain: PRK10909
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional.
Probab=99.42 E-value=4.3e-12 Score=98.07 Aligned_cols=149 Identities=18% Similarity=0.376 Sum_probs=102.7
Q ss_pred HHHHHHHHHEEECCCCCCCEEEEECCCCCHHHH-HHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
Q ss_conf 787755442011147788338860246423588-8850685699844758899999997886089964999768999989
Q gi|254781000|r 193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 (371)
Q Consensus 193 ~~~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl-~La~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~ 271 (371)
T Consensus 38 rvREalFn~L~~~i--~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da~~~L~ 115 (198)
T PRK10909 38 RVRETLFNWLAPVI--VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNALSFLA 115 (198)
T ss_pred HHHHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH
T ss_conf 89999998757642--9987998277746889999987997899997899999999999998488867999556999862
Q ss_pred HHHHCCCCCCCCCCHHCCCCCCEEEECCCC-CCHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 886233222232101014787799986970-2634899999853-----9948999299899988699842696799999
Q gi|254781000|r 272 AMRREREFNRLKDIDIHSYRFKTIFVDPPR-SGLDDATVGMVQA-----YPHILYISCNPDSLCRDLSILSTTHTIERLA 345 (371)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~d~vilDPPR-~G~~~~~~~~~~~-----~~~ivYVSCnp~TlarD~~~l~~gy~i~~~~ 345 (371)
T Consensus 116 ~~---------------~~~fDlIF~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~---~l~~~~~~~~l~kek 177 (198)
T PRK10909 116 QP---------------GTPHNVVFVDPPFRKGLLEETINLLEQNGWLADDALIYVESEVEN---GLPTVPANWSLHREK 177 (198)
T ss_pred CC---------------CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCC---CCCCCCCCEEEEEEC
T ss_conf 55---------------995218998999765559999999998889189969999954888---877789885999970
Q ss_pred EEECCCCCCCEEEEEEEEECCCC
Q ss_conf 97179898724899999985612
Q gi|254781000|r 346 LFDQFPYTRHMECGVLLVRKPSG 368 (371)
Q Consensus 346 ~~D~FP~T~HvE~v~~l~R~~~~ 368 (371)
T Consensus 178 ~yG---~----t~~~lY~~~~~~ 193 (198)
T PRK10909 178 VAG---Q----VAYRLYQREAQG 193 (198)
T ss_pred CCC---C----EEEEEEEECCCC
T ss_conf 308---6----999999987877