HHsearch alignment for GI: 254781000 and conserved domain: PRK10909

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional.
Probab=99.42  E-value=4.3e-12  Score=98.07  Aligned_cols=149  Identities=18%  Similarity=0.376  Sum_probs=102.7

Q ss_pred             HHHHHHHHHEEECCCCCCCEEEEECCCCCHHHH-HHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
Q ss_conf             787755442011147788338860246423588-8850685699844758899999997886089964999768999989
Q gi|254781000|r  193 GINVHMLEWVLAATKGIQGDLLELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ  271 (371)
Q Consensus       193 ~~~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl-~La~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~  271 (371)
T Consensus        38 rvREalFn~L~~~i--~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da~~~L~  115 (198)
T PRK10909         38 RVRETLFNWLAPVI--VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNALSFLA  115 (198)
T ss_pred             HHHHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH
T ss_conf             89999998757642--9987998277746889999987997899997899999999999998488867999556999862


Q ss_pred             HHHHCCCCCCCCCCHHCCCCCCEEEECCCC-CCHHHHHHHHHHC-----CCCEEEEECCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             886233222232101014787799986970-2634899999853-----9948999299899988699842696799999
Q gi|254781000|r  272 AMRREREFNRLKDIDIHSYRFKTIFVDPPR-SGLDDATVGMVQA-----YPHILYISCNPDSLCRDLSILSTTHTIERLA  345 (371)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~d~vilDPPR-~G~~~~~~~~~~~-----~~~ivYVSCnp~TlarD~~~l~~gy~i~~~~  345 (371)
T Consensus       116 ~~---------------~~~fDlIF~DPPY~~~~~~~~l~~l~~~~~L~~~gliiiE~~~~~---~l~~~~~~~~l~kek  177 (198)
T PRK10909        116 QP---------------GTPHNVVFVDPPFRKGLLEETINLLEQNGWLADDALIYVESEVEN---GLPTVPANWSLHREK  177 (198)
T ss_pred             CC---------------CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCC---CCCCCCCCEEEEEEC
T ss_conf             55---------------995218998999765559999999998889189969999954888---877789885999970


Q ss_pred             EEECCCCCCCEEEEEEEEECCCC
Q ss_conf             97179898724899999985612
Q gi|254781000|r  346 LFDQFPYTRHMECGVLLVRKPSG  368 (371)
Q Consensus       346 ~~D~FP~T~HvE~v~~l~R~~~~  368 (371)
T Consensus       178 ~yG---~----t~~~lY~~~~~~  193 (198)
T PRK10909        178 VAG---Q----VAYRLYQREAQG  193 (198)
T ss_pred             CCC---C----EEEEEEEECCCC
T ss_conf             308---6----999999987877