HHsearch alignment for GI: 254781000 and conserved domain: PRK11088

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional.
Probab=97.70  E-value=0.00018  Score=48.38  Aligned_cols=119  Identities=15%  Similarity=0.246  Sum_probs=76.1

Q ss_pred             HHHHCCCHHHHHHHHHHEEECCCCCCCEEEEECCCCCHHHHHHHHC-----CCEEEEECCCHHHHHHHHHHHHHCCCCCE
Q ss_conf             1331235778775544201114778833886024642358888506-----85699844758899999997886089964
Q gi|254781000|r  185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARH-----FDRVLAVEIAKPSVEAARYNIAANHVNNV  259 (371)
Q Consensus       185 ~sFfQ~N~~~~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl~La~~-----~~~V~gvE~~~~ai~~A~~Na~~N~i~n~  259 (371)
T Consensus        64 ~G~y~---pl~~~i~~~~~~~~~~~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak---~~--~~~  135 (272)
T PRK11088         64 AGHYQ---PLRDAVANLLAERLDEKATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAK---RY--PQV  135 (272)
T ss_pred             CCCCH---HHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHC---CC--CCC
T ss_conf             68847---99999999999756777864888158777899999997411578737998117999999962---68--885


Q ss_pred             EEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEE-ECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHH
Q ss_conf             9997689999898862332222321010147877999-869702634899999853994899929989998
Q gi|254781000|r  260 KIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIF-VDPPRSGLDDATVGMVQAYPHILYISCNPDSLC  329 (371)
Q Consensus       260 ~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi-lDPPR~G~~~~~~~~~~~~~~ivYVSCnp~Tla  329 (371)
T Consensus       136 ~~~Va~~~~----------------lP~~d~s~D~vl~vFsP~~~--~Ef~RvLkp~G~li~V~P~~~HL~  188 (272)
T PRK11088        136 TFCVASSHR----------------LPFADQSLDAIIRIYAPCKA--EELARVVKPGGIVITVTPGPRHLF  188 (272)
T ss_pred             EEEEEECCC----------------CCCCCCCCEEEEEEECCCCH--HHHHHEECCCCEEEEEECCHHHHH
T ss_conf             499961001----------------88876654089998437885--886124637978999978888999