HHsearch alignment for GI: 254781000 and conserved domain: PRK11783
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=99.37 E-value=2.8e-10 Score=86.29 Aligned_cols=250 Identities=16% Similarity=0.134 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHCCCCC-----CCEEEEEEEEECCCCEEEEEEECCC--CCHH-----HHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 99999998644088533-----4257878898049949999973777--8955-----8999999997532134168972
Q gi|254781000|r 85 ALMIEMMATIRLEPLLR-----AKLFQIDYLTSQSDQAIVTLIYHRL--LDDA-----WRECAIRLRDALHARKYQIQLI 152 (371)
Q Consensus 85 ~~~~~l~~~~~~~~~l~-----~~l~~i~~~~~~~~~~~v~l~~~~~--~~~~-----~~~~~~~l~~~~~~~~~~~~~~ 152 (371)
T Consensus 415 Kn~k~l~kwa~~~~i~cyR~YDaDlPey~~aiD~Y~~~~~v~ey~~p~~i~~~~a~~rl~~~~~~~~~~l~v~~~~v~~K 494 (716)
T PRK11783 415 KNLKKLKKWAKKEGIECYRLYDADLPEYNVAVDRYGDWVVVQEYAAPKTIDEEKARQRLFDALAATPEVLGIPPEKVVLK 494 (716)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHEEEE
T ss_conf 98999998998649845886167777454688840786899970588889978999999999999999968986786888
Q ss_pred ECCCCE-EEEECCC-CEEEEEEECCCEEEEEECCHH-----HHCCCHHHHHHHHHHEEECCCCCCCEEEEECCCCCHHHH
Q ss_conf 537982-8960566-414899967912799976413-----312357787755442011147788338860246423588
Q gi|254781000|r 153 GRANKT-KICLDRD-YVDERLTVAGRTLIYRQIENS-----FTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSL 225 (371)
Q Consensus 153 ~~~~~~-~~~~g~~-~~~e~l~~~~~~~~f~i~p~s-----FfQ~N~~~~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl 225 (371)
T Consensus 495 ~R~rqkg~~QY~k~~~~~~~~~v~E~~~~f~vNl~dYlDtGLFLDhR~~R~~----i~~~a~--gk~fLNLF~YTgt~sv 568 (716)
T PRK11783 495 TRERQKGKNQYQKLAQKGEFLIVTEYGAKLWVNLTDYLDTGLFLDHRPTRRM----IGQMAK--GKRFLNLFAYTGTASV 568 (716)
T ss_pred EECCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCCCCCCCCCCCHHHHHH----HHHHHC--CCCEEEEEECCCCEEH
T ss_conf 8525778764444546787699995786899977720226745443799999----999707--8846431222561021
Q ss_pred HHHH-CCCEEEEECCCHHHHHHHHHHHHHCCCC--CEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCCC
Q ss_conf 8850-6856998447588999999978860899--649997689999898862332222321010147877999869702
Q gi|254781000|r 226 VLAR-HFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRS 302 (371)
Q Consensus 226 ~La~-~~~~V~gvE~~~~ai~~A~~Na~~N~i~--n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~ 302 (371)
T Consensus 569 ~Aa~gGA~~t~sVD~S~tyl~Wa~~N~~lN~~~~~~h~~v~aD~~~wl~~~---------------~~~fDli~~DPPtF 633 (716)
T PRK11783 569 HAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRFIQADCLAWLKEA---------------REQFDLIFIDPPTF 633 (716)
T ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHC---------------CCCCCEEEECCCCC
T ss_conf 335279612278627087999999999854999634738964089999857---------------77667899889999
Q ss_pred CHHH-------------HHHHHHH---CCCCEEEEECCHHHHHHHHHHHCC-CCEEEEE----EEEECC--CCCCC
Q ss_conf 6348-------------9999985---399489992998999886998426-9679999----997179--89872
Q gi|254781000|r 303 GLDD-------------ATVGMVQ---AYPHILYISCNPDSLCRDLSILST-THTIERL----ALFDQF--PYTRH 355 (371)
Q Consensus 303 G~~~-------------~~~~~~~---~~~~ivYVSCnp~TlarD~~~l~~-gy~i~~~----~~~D~F--P~T~H 355 (371)
T Consensus 634 SnSk~m~~~~dvqrDh~~li~~~~~~L~~~G~l~FS~N~r~F~ld~~~l~~~~~~~~dit~~tip~Df~rn~~iH~ 709 (716)
T PRK11783 634 SNSKRMEDSFDVQRDHVALIKLAMRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLAVEEITQKTLPPDFARNPKIHN 709 (716)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCCCCCCCCCCCCCE
T ss_conf 8766678863220309999999998608996899962887634287675215960687754458855467997626