HHsearch alignment for GI: 254781000 and conserved domain: PRK11783
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=98.39 E-value=2.9e-06 Score=60.11 Aligned_cols=100 Identities=18% Similarity=0.341 Sum_probs=68.7
Q ss_pred EEEEECCCCCHHHHHHHH---C---------C--------------------------------CEEEEECCCHHHHHHH
Q ss_conf 388602464235888850---6---------8--------------------------------5699844758899999
Q gi|254781000|r 212 DLLELYCGNGNFSLVLAR---H---------F--------------------------------DRVLAVEIAKPSVEAA 247 (371)
Q Consensus 212 ~vlDLycG~G~fsl~La~---~---------~--------------------------------~~V~gvE~~~~ai~~A 247 (371)
T Consensus 197 pLvDPMCGSGTllIEAAliA~~iAPGl~R~~fgF~~W~~~d~~lW~~l~~eA~~r~~~~~~~~~~~i~G~D~D~~ai~~A 276 (716)
T PRK11783 197 PLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSAWLGHDEALWQELLEEAQERARAGLAECSPKFYGSDIDPRVIQAA 276 (716)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHH
T ss_conf 13446668437899999998477988654545641156889999999999999865422346887189995998999999
Q ss_pred HHHHHHCCCCC-EEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCC---CCHHHHHHHHH-------H-CC
Q ss_conf 99788608996-4999768999989886233222232101014787799986970---26348999998-------5-39
Q gi|254781000|r 248 RYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR---SGLDDATVGMV-------Q-AY 315 (371)
Q Consensus 248 ~~Na~~N~i~n-~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR---~G~~~~~~~~~-------~-~~ 315 (371)
T Consensus 277 r~Na~~AGv~~~I~f~~~d~~~l~~p--------------~~~~~~Gliv~NPPYGERLge~~~L~~LY~~lG~~lK~~f 342 (716)
T PRK11783 277 RRNARRAGVEELITFEVKDVADLKNP--------------LPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKKQF 342 (716)
T ss_pred HHHHHHCCCCCCCEEEECCHHHCCCC--------------CCCCCCCEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999819988629995678985798--------------7778982899678522013661468999999999999658
Q ss_pred C--CEEEEECCH
Q ss_conf 9--489992998
Q gi|254781000|r 316 P--HILYISCNP 325 (371)
Q Consensus 316 ~--~ivYVSCnp 325 (371)
T Consensus 343 ~GW~~~ilT~~~ 354 (716)
T PRK11783 343 GGWNAALFSSSP 354 (716)
T ss_pred CCCEEEEEECCH
T ss_conf 998699997888