HHsearch alignment for GI: 254781000 and conserved domain: PRK11783

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=98.39  E-value=2.9e-06  Score=60.11  Aligned_cols=100  Identities=18%  Similarity=0.341  Sum_probs=68.7

Q ss_pred             EEEEECCCCCHHHHHHHH---C---------C--------------------------------CEEEEECCCHHHHHHH
Q ss_conf             388602464235888850---6---------8--------------------------------5699844758899999
Q gi|254781000|r  212 DLLELYCGNGNFSLVLAR---H---------F--------------------------------DRVLAVEIAKPSVEAA  247 (371)
Q Consensus       212 ~vlDLycG~G~fsl~La~---~---------~--------------------------------~~V~gvE~~~~ai~~A  247 (371)
T Consensus       197 pLvDPMCGSGTllIEAAliA~~iAPGl~R~~fgF~~W~~~d~~lW~~l~~eA~~r~~~~~~~~~~~i~G~D~D~~ai~~A  276 (716)
T PRK11783        197 PLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSAWLGHDEALWQELLEEAQERARAGLAECSPKFYGSDIDPRVIQAA  276 (716)
T ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHH
T ss_conf             13446668437899999998477988654545641156889999999999999865422346887189995998999999


Q ss_pred             HHHHHHCCCCC-EEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCC---CCHHHHHHHHH-------H-CC
Q ss_conf             99788608996-4999768999989886233222232101014787799986970---26348999998-------5-39
Q gi|254781000|r  248 RYNIAANHVNN-VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR---SGLDDATVGMV-------Q-AY  315 (371)
Q Consensus       248 ~~Na~~N~i~n-~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR---~G~~~~~~~~~-------~-~~  315 (371)
T Consensus       277 r~Na~~AGv~~~I~f~~~d~~~l~~p--------------~~~~~~Gliv~NPPYGERLge~~~L~~LY~~lG~~lK~~f  342 (716)
T PRK11783        277 RRNARRAGVEELITFEVKDVADLKNP--------------LPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKKQF  342 (716)
T ss_pred             HHHHHHCCCCCCCEEEECCHHHCCCC--------------CCCCCCCEEEECCCHHCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             99999819988629995678985798--------------7778982899678522013661468999999999999658


Q ss_pred             C--CEEEEECCH
Q ss_conf             9--489992998
Q gi|254781000|r  316 P--HILYISCNP  325 (371)
Q Consensus       316 ~--~ivYVSCnp  325 (371)
T Consensus       343 ~GW~~~ilT~~~  354 (716)
T PRK11783        343 GGWNAALFSSSP  354 (716)
T ss_pred             CCCEEEEEECCH
T ss_conf             998699997888