HHsearch alignment for GI: 254781000 and conserved domain: TIGR00308
>TIGR00308 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs . The enzyme is found in both eukaryotes and archaea .; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing.
Probab=97.26 E-value=0.00038 Score=46.27 Aligned_cols=112 Identities=17% Similarity=0.249 Sum_probs=85.3
Q ss_pred EEEECCCCCHHHHHHHH-----CCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHH
Q ss_conf 88602464235888850-----6856998447588999999978860899649997689999898862332222321010
Q gi|254781000|r 213 LLELYCGNGNFSLVLAR-----HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDI 287 (371)
Q Consensus 213 vlDLycG~G~fsl~La~-----~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 287 (371)
T Consensus 98 ~~dALSasGiRaiRya~E~~fngv~~v~~ND~~P~Ave~I~~N~~~N~v~N~~v~n~Da~~~L~~~nkat---------- 167 (462)
T TIGR00308 98 IADALSASGIRAIRYALEVEFNGVKKVFANDINPKAVESIKNNVKLNSVENIEVINEDAAAVLRKRNKAT---------- 167 (462)
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCHHH----------
T ss_conf 9987510408899998744657610677534773788998841232442276545503799987512112----------
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHH-HCCCC--EEEEECCHHHHHHHHHHHCC-CCEEE
Q ss_conf 1478779998697026348999998-53994--89992998999886998426-96799
Q gi|254781000|r 288 HSYRFKTIFVDPPRSGLDDATVGMV-QAYPH--ILYISCNPDSLCRDLSILST-THTIE 342 (371)
Q Consensus 288 ~~~~~d~vilDPPR~G~~~~~~~~~-~~~~~--ivYVSCnp~TlarD~~~l~~-gy~i~ 342 (371)
T Consensus 168 -~~~F~viDiDPFGspA-PFvd~A~~~~~~~NglL~vTAT------Dta~LcG~G~~~~ 218 (462)
T TIGR00308 168 -FRKFEVIDIDPFGSPA-PFVDSAIRASAKRNGLLLVTAT------DTAALCGSGYKKS 218 (462)
T ss_pred -CCCCCEEEECCCCCCC-CHHHHHHHHHHHCCCCEEEHHH------HHHHHCCCCCCCH
T ss_conf -3676437647877974-1589999999746860440667------8998627888621