HHsearch alignment for GI: 254781000 and conserved domain: TIGR02085
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=100.00 E-value=0 Score=444.48 Aligned_cols=344 Identities=20% Similarity=0.280 Sum_probs=278.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCEEEEEEEEEEECCEEEEEEECCCCCC--EEECCCC
Q ss_conf 6676665989999999999999986518877---6302898768226899999976891699998289973--7975637
Q gi|254781000|r 2 SGTLLIDQYEQQLAEKVDRLRQMMLAFQVPN---LQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKE--RMRIDYF 76 (371)
Q Consensus 2 ~~~l~~~~Y~~QL~~K~~~v~~~l~r~~~~~---~~i~~s~~~~YRnr~~l~v~~~~~~~~~g~~~~~s~~--iv~i~~C 76 (371)
T Consensus 12 SCqw~~~P~s~Ql~~K~~~L~~lla~i~~~~~qW~aPv~s~~~aFRNKAKMVVsGsve~P~LG~l~~~g~Pqsa~dLc~C 91 (386)
T TIGR02085 12 SCQWLEQPYSEQLTEKQQHLKELLASIDYTVAQWLAPVTSAEQAFRNKAKMVVSGSVERPILGILHRDGTPQSAIDLCDC 91 (386)
T ss_pred CHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHCCCCCCCCHHHHCCC
T ss_conf 16765278835567899999986034788733246887888655524220365122036501010375258311443048
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCC-------CCCEEEEEEE-EECCCCEEEEEEECCCCC-HHHHHHHHHHHHHCCCCCE
Q ss_conf 458889999999999864408853-------3425787889-804994999997377789-5589999999975321341
Q gi|254781000|r 77 MPGSLLINALMIEMMATIRLEPLL-------RAKLFQIDYL-TSQSDQAIVTLIYHRLLD-DAWRECAIRLRDALHARKY 147 (371)
Q Consensus 77 ~i~~~~i~~~~~~l~~~~~~~~~l-------~~~l~~i~~~-~~~~~~~~v~l~~~~~~~-~~~~~~~~~l~~~~~~~~~ 147 (371)
T Consensus 92 PLYP~~f~~~f~~Lk~fI~rAGl~PYN~akkkGELKfiLLTeS~~~g~lMLRFVlRs~~kL~~~~~~LP~L~~~lP~l~V 171 (386)
T TIGR02085 92 PLYPQSFEPVFAILKDFIARAGLTPYNVAKKKGELKFILLTESEASGKLMLRFVLRSETKLAQIRRALPWLLEQLPQLEV 171 (386)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 77870278999998888874589861443026530000100102468724200010266899999875799987797168
Q ss_pred EEEEEEC-------CCCEEEEECCCCEEEEEEECCCEEEEEECCHHHHCCCHHHHHHHHHHEEECCCCCC-CEEEEECCC
Q ss_conf 6897253-------79828960566414899967912799976413312357787755442011147788-338860246
Q gi|254781000|r 148 QIQLIGR-------ANKTKICLDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCG 219 (371)
Q Consensus 148 ~~~~~~~-------~~~~~~~~g~~~~~e~l~~~~~~~~f~i~p~sFfQ~N~~~~~~l~~~v~~~~~~~~-~~vlDLycG 219 (371)
T Consensus 172 IsvNiQPvHmAiLEGE~EIfLTEqQ~L~E~F----N~vPl~IRP~sFFQTNP~VA~~LYATAr~WV~e~~~~~mWDLFCG 247 (386)
T TIGR02085 172 ISVNIQPVHMAILEGEEEIFLTEQQALPERF----NDVPLFIRPQSFFQTNPKVAAQLYATARQWVRELPVKQMWDLFCG 247 (386)
T ss_pred EEEECCHHHHHHHCCCCCCCCHHHHHHHHHH----CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 8630455678764487202110132214441----898616637864467878898876889999974571103201046
Q ss_pred CCHHHHHHH-------HCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCC
Q ss_conf 423588885-------0685699844758899999997886089964999768999989886233222232101014787
Q gi|254781000|r 220 NGNFSLVLA-------RHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292 (371)
Q Consensus 220 ~G~fsl~La-------~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (371)
T Consensus 248 VGGFgLHCAkalqekw~p~~~lTGIEI~~eAIa~A~~SA~~lGl~~~~F~aLDsa~f~~~~~e--------------~~P 313 (386)
T TIGR02085 248 VGGFGLHCAKALQEKWGPDTQLTGIEIESEAIACAKQSAKILGLENLSFAALDSAKFATAQAE--------------SVP 313 (386)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC--------------CCC
T ss_conf 541278998987641589704431343778999999999873533210454457999986236--------------889
Q ss_pred CEEEECCCCCCHHHHHHHHHH--CCCCEEEEECCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEE
Q ss_conf 799986970263489999985--399489992998999886998426967999999717989872489999998
Q gi|254781000|r 293 KTIFVDPPRSGLDDATVGMVQ--AYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364 (371)
Q Consensus 293 d~vilDPPR~G~~~~~~~~~~--~~~~ivYVSCnp~TlarD~~~l~~gy~i~~~~~~D~FP~T~HvE~v~~l~R 364 (371)
T Consensus 314 eLVlVNPPRRGiG~eL~~~L~~~aP~fILYSSCNa~TM~KDi~~L-~~Y~~~rvQlFDMFPhT~HyEVLtLL~~ 386 (386)
T TIGR02085 314 ELVLVNPPRRGIGKELCDYLSQLAPKFILYSSCNAQTMAKDIAEL-SGYKIERVQLFDMFPHTSHYEVLTLLVR 386 (386)
T ss_pred CEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHC-CCCCEEEEEEECCCCCCCHHHHHHHHCC
T ss_conf 657767888887606899997508862662167722589999755-6883577653307898633678765149