HHsearch alignment for GI: 254781000 and conserved domain: TIGR02143
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=100.00 E-value=0 Score=629.08 Aligned_cols=357 Identities=59% Similarity=1.000 Sum_probs=353.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEECCCCC-CEEECCCCCCCCHHHHHHH
Q ss_conf 989999999999999986518877630289876822689999997689169999828997-3797563745888999999
Q gi|254781000|r 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTK-ERMRIDYFMPGSLLINALM 87 (371)
Q Consensus 9 ~Y~~QL~~K~~~v~~~l~r~~~~~~~i~~s~~~~YRnr~~l~v~~~~~~~~~g~~~~~s~-~iv~i~~C~i~~~~i~~~~ 87 (371)
T Consensus 1 ~Y~~qL~~K~~~L~~~~~~F~~p~~~vF~Sp~~HYRmRAEFR~WhE~d~~yY~MFd~~~k~~~~~~d~f~~AS~~IN~lM 80 (361)
T TIGR02143 1 SYTAQLQEKKSRLKKLFAPFDAPEPEVFESPDKHYRMRAEFRLWHEGDDLYYAMFDQATKASKIRVDQFPIASELINRLM 80 (361)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEEEEEEECCCEEEEECCCCCCCCCEEECCCHHHHHHHHHHH
T ss_conf 92567999999999984210688613431874436121356788718806886168111677335305525579999999
Q ss_pred HHHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCE
Q ss_conf 99998644088533425787889804994999997377789558999999997532134168972537982896056641
Q gi|254781000|r 88 IEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYV 167 (371)
Q Consensus 88 ~~l~~~~~~~~~l~~~l~~i~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 167 (371)
T Consensus 81 ~~L~~~~~~~~~L~~KLFqvdfLsTLsg~~~vsLlYHk~Ldd~W~~~A~~L~~~L~~~~l~v~lIGRa~k~Ki~l~~DYv 160 (361)
T TIGR02143 81 PALIAALKQNEALRHKLFQVDFLSTLSGEILVSLLYHKQLDDEWRQAAEALKDKLRAQGLDVNLIGRARKKKIVLDRDYV 160 (361)
T ss_pred HHHHHHHHHCHHHHHHCEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCE
T ss_conf 99999984066754001220256645788885775067721789999999999986347856899733686555103530
Q ss_pred EEEEEECCCEEEEEECCHHHHCCCHHHHHHHHHHEEECCCCCCC-EEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHH
Q ss_conf 48999679127999764133123577877554420111477883-38860246423588885068569984475889999
Q gi|254781000|r 168 DERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQG-DLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEA 246 (371)
Q Consensus 168 ~e~l~~~~~~~~f~i~p~sFfQ~N~~~~~~l~~~v~~~~~~~~~-~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~ 246 (371)
T Consensus 161 ~E~L~V~gr~~~YrQ~E~sFtQPNa~vn~kMLeWA~~~~~~~~g~DLLELYCGNGNFsLaLA~~f~rVLATEiaK~SV~a 240 (361)
T TIGR02143 161 DETLPVNGREFIYRQVENSFTQPNAAVNQKMLEWALEVTQNSKGMDLLELYCGNGNFSLALAQNFERVLATEIAKPSVNA 240 (361)
T ss_pred EEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 36620388078998637872475189999999999998358888720100026753104456533345543024024799
Q ss_pred HHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCC--CCHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9997886089964999768999989886233222232--10101478779998697026348999998539948999299
Q gi|254781000|r 247 ARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLK--DIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCN 324 (371)
Q Consensus 247 A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYVSCn 324 (371)
T Consensus 241 Aq~Ni~~N~idNv~i~RlSAEEft~A~~~~R~F~RL~d~gIdL~~Y~f~tiFVDPPRaGlD~~t~~Lv~~y~rIlYISCN 320 (361)
T TIGR02143 241 AQYNIAANKIDNVQIIRLSAEEFTEAMNGVREFRRLKDGGIDLKSYNFNTIFVDPPRAGLDPDTVKLVQKYERILYISCN 320 (361)
T ss_pred HHHHHHCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECC
T ss_conf 99998717988310102327999998603776546566886334202560267798888898999999625987998469
Q ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEC
Q ss_conf 89998869984269679999997179898724899999985
Q gi|254781000|r 325 PDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 (371)
Q Consensus 325 p~TlarD~~~l~~gy~i~~~~~~D~FP~T~HvE~v~~l~R~ 365 (371)
T Consensus 321 P~TL~~NL~~L~~TH~v~r~ALFDQFPyThHmE~GVlL~~~ 361 (361)
T TIGR02143 321 PETLKENLEQLSETHRVERFALFDQFPYTHHMESGVLLERR 361 (361)
T ss_pred HHHHHHHHHHHHHCCEEEEHHHCCCCCCCCHHHCCCCCCCC
T ss_conf 68999999988606532201011687885402102000269