HHsearch alignment for GI: 254781000 and conserved domain: TIGR03534

>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=99.49  E-value=1.7e-13  Score=107.27  Aligned_cols=108  Identities=24%  Similarity=0.262  Sum_probs=87.1

Q ss_pred             EEEEEECCHHHHCCCHHHHHHHHHHEEECCCCCCCEEEEECCCCCHHHHHHHHCC--CEEEEECCCHHHHHHHHHHHHHC
Q ss_conf             2799976413312357787755442011147788338860246423588885068--56998447588999999978860
Q gi|254781000|r  177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAAN  254 (371)
Q Consensus       177 ~~~f~i~p~sFfQ~N~~~~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~Na~~N  254 (371)
T Consensus        57 ~~~f~V~~~VLIP--RpETE~Lve~~l~~~~~~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~  134 (251)
T TIGR03534        57 GLDFKVSPGVLIP--RPDTEELVEAALERLKKGPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRL  134 (251)
T ss_pred             EEEEEEECCEEEE--CCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf             6899971887864--88339999999997314898699955671699999999679978999989879999999999980


Q ss_pred             CCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCCCC
Q ss_conf             8996499976899998988623322223210101478779998697026
Q gi|254781000|r  255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG  303 (371)
Q Consensus       255 ~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G  303 (371)
T Consensus       135 ~~~~v~~~~~d~~~~~-----------------~~~~fDlIvsNPPYI~  166 (251)
T TIGR03534       135 GLENVRFLKSDWFEPL-----------------PGGKFDLIVSNPPYIP  166 (251)
T ss_pred             CCCEEEEEECCHHHCC-----------------CCCCCCEEEECCCCCC
T ss_conf             9982686513143215-----------------6898668997899887