HHsearch alignment for GI: 254781000 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=99.49 E-value=1.7e-13 Score=107.27 Aligned_cols=108 Identities=24% Similarity=0.262 Sum_probs=87.1
Q ss_pred EEEEEECCHHHHCCCHHHHHHHHHHEEECCCCCCCEEEEECCCCCHHHHHHHHCC--CEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 2799976413312357787755442011147788338860246423588885068--56998447588999999978860
Q gi|254781000|r 177 TLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAAN 254 (371)
Q Consensus 177 ~~~f~i~p~sFfQ~N~~~~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~Na~~N 254 (371)
T Consensus 57 ~~~f~V~~~VLIP--RpETE~Lve~~l~~~~~~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~ 134 (251)
T TIGR03534 57 GLDFKVSPGVLIP--RPDTEELVEAALERLKKGPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRL 134 (251)
T ss_pred EEEEEEECCEEEE--CCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHC
T ss_conf 6899971887864--88339999999997314898699955671699999999679978999989879999999999980
Q ss_pred CCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCCCC
Q ss_conf 8996499976899998988623322223210101478779998697026
Q gi|254781000|r 255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSG 303 (371)
Q Consensus 255 ~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G 303 (371)
T Consensus 135 ~~~~v~~~~~d~~~~~-----------------~~~~fDlIvsNPPYI~ 166 (251)
T TIGR03534 135 GLENVRFLKSDWFEPL-----------------PGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCEEEEEECCHHHCC-----------------CCCCCCEEEECCCCCC
T ss_conf 9982686513143215-----------------6898668997899887