HHsearch alignment for GI: 254781000 and conserved domain: cd00315
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=98.13 E-value=3.9e-05 Score=52.72 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=73.6
Q ss_pred EEEEECCCCCHHHHHHHH-CCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCC
Q ss_conf 388602464235888850-6856998447588999999978860899649997689999898862332222321010147
Q gi|254781000|r 212 DLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 (371)
Q Consensus 212 ~vlDLycG~G~fsl~La~-~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 290 (371)
T Consensus 2 ~v~dLFsG~GG~s~Gl~~aG~~~~~a~e~d~~a~~t~~~N~~~------~~~~~Di~~~~~~~--------------~~~ 61 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKD--------------FIP 61 (275)
T ss_pred CEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC------CCCCCCHHHCCCCC--------------CCC
T ss_conf 5999767807899999986998999996899999999988799------95258864465321--------------378
Q ss_pred CCCEEEECCCC----------------CCHHHHHHHHHHC-CCCEEEEECCHHHHH---------HHHHHHCC-CCEEEE
Q ss_conf 87799986970----------------2634899999853-994899929989998---------86998426-967999
Q gi|254781000|r 291 RFKTIFVDPPR----------------SGLDDATVGMVQA-YPHILYISCNPDSLC---------RDLSILST-THTIER 343 (371)
Q Consensus 291 ~~d~vilDPPR----------------~G~~~~~~~~~~~-~~~ivYVSCnp~Tla---------rD~~~l~~-gy~i~~ 343 (371)
T Consensus 62 ~vDll~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~i~~~~P~~~~~-ENV~~~~~~~~~~~~~~i~~~l~~~GY~~~~ 140 (275)
T cd00315 62 DIDLLTGGFPCQPFSIAGKRKGFEDTRGTLFFEIIRILKEKKPKYFLL-ENVKGLLTHDNGNTLKVILNTLEELGYNVYW 140 (275)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEH-HHHHHHHHHCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 878898689998735478638865640168999999998768858827-6376687523560789999999867982027
Q ss_pred EEEEEC----CCCCCCE
Q ss_conf 999717----9898724
Q gi|254781000|r 344 LALFDQ----FPYTRHM 356 (371)
Q Consensus 344 ~~~~D~----FP~T~Hv 356 (371)
T Consensus 141 ~-vl~a~~~GvPQ~R~R 156 (275)
T cd00315 141 K-LLNASDYGVPQNRER 156 (275)
T ss_pred E-EECHHHCCCCCCCCE
T ss_conf 7-867999799977618