HHsearch alignment for GI: 254781000 and conserved domain: pfam00145
>pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
Probab=97.71 E-value=5.3e-05 Score=51.85 Aligned_cols=119 Identities=21% Similarity=0.304 Sum_probs=67.2
Q ss_pred EEEEECCCCCHHHHHHHH-CCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCC
Q ss_conf 388602464235888850-6856998447588999999978860899649997689999898862332222321010147
Q gi|254781000|r 212 DLLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 (371)
Q Consensus 212 ~vlDLycG~G~fsl~La~-~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 290 (371)
T Consensus 2 ~vidlF~G~GG~s~G~~~aG~~~~~a~e~d~~a~~ty~~N~~~-------~~~~Di~~~~~~-------------~~--~ 59 (319)
T pfam00145 2 KFIDLFAGIGGFRLGLEQAGFECVAANEIDKSAAKTYEANFPK-------VPIGDITLIDIK-------------DI--P 59 (319)
T ss_pred CEEEECCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCC-------CCCCCCCCCCHH-------------HC--C
T ss_conf 5899780707899999987992999983899999999987799-------961775408874-------------78--8
Q ss_pred CCCEEEECCC---------CCC-------HHHHHHHHHHC-CCCEEEEECCHHHHH--------HH-HHHHCC-CCEEEE
Q ss_conf 8779998697---------026-------34899999853-994899929989998--------86-998426-967999
Q gi|254781000|r 291 RFKTIFVDPP---------RSG-------LDDATVGMVQA-YPHILYISCNPDSLC--------RD-LSILST-THTIER 343 (371)
Q Consensus 291 ~~d~vilDPP---------R~G-------~~~~~~~~~~~-~~~ivYVSCnp~Tla--------rD-~~~l~~-gy~i~~ 343 (371)
T Consensus 60 ~~Dvl~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~Pk~~v~-ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~ 138 (319)
T pfam00145 60 DIDILTGGFPCQDFSIAGKQKGFEDTRGTLFFEIIRIIKEKKPKAFLL-ENVKGLLSHDNGNTLNVILETLEELGYSVSW 138 (319)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHCCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf 868898689998724015568853433138999999877519868873-0408786445305899999999867985532
Q ss_pred EEEEEC----CCCCC
Q ss_conf 999717----98987
Q gi|254781000|r 344 LALFDQ----FPYTR 354 (371)
Q Consensus 344 ~~~~D~----FP~T~ 354 (371)
T Consensus 139 -~vlna~dyGvPQ~R 152 (319)
T pfam00145 139 -KVLNASDYGVPQNR 152 (319)
T ss_pred -EECCHHHCCCCCCC
T ss_conf -10778880898764