HHsearch alignment for GI: 254781000 and conserved domain: pfam01170

>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=99.18  E-value=7e-11  Score=90.18  Aligned_cols=124  Identities=19%  Similarity=0.314  Sum_probs=86.4

Q ss_pred             CHHHHHHHHHHEEECCCCCC-CEEEEECCCCCHHHHHHHHCCCE--EEEECCCHHHHHHHHHHHHHCCCCC-EEEEECCH
Q ss_conf             57787755442011147788-33886024642358888506856--9984475889999999788608996-49997689
Q gi|254781000|r  191 NAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSS  266 (371)
Q Consensus       191 N~~~~~~l~~~v~~~~~~~~-~~vlDLycG~G~fsl~La~~~~~--V~gvE~~~~ai~~A~~Na~~N~i~n-~~f~~~~a  266 (371)
T Consensus        13 ~~~lAa~l~~la----~~~~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~   88 (171)
T pfam01170        13 KATLARAMVNLA----GWKPGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADA   88 (171)
T ss_pred             CHHHHHHHHHHH----CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf             899999999985----8999997886899878999999996135895367587999999999999828998469997666


Q ss_pred             HHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCC---CCCHHHHHHHH-------HH-CC-CCEEEEECCHHHHHHHHHH
Q ss_conf             9998988623322223210101478779998697---02634899999-------85-39-9489992998999886998
Q gi|254781000|r  267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATVGM-------VQ-AY-PHILYISCNPDSLCRDLSI  334 (371)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPP---R~G~~~~~~~~-------~~-~~-~~ivYVSCnp~TlarD~~~  334 (371)
T Consensus        89 ~~l~----------------~~~~~~d~Iv~nPPYG~r~~~~~~~~~ly~~~~~~~~~~~~g~~~~i~~~~~~~~k~~~~  152 (171)
T pfam01170        89 ADLP----------------LLNGSVDTIVTDPPYGIRIGSKGALEKLYPAFLDEAKRVLRGRLVFATPEKKDFEKAARE  152 (171)
T ss_pred             HHCC----------------CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCC
T ss_conf             5387----------------987883189988982011365456999999999999986899789999686899998550