HHsearch alignment for GI: 254781000 and conserved domain: pfam01170
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=99.18 E-value=7e-11 Score=90.18 Aligned_cols=124 Identities=19% Similarity=0.314 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHEEECCCCCC-CEEEEECCCCCHHHHHHHHCCCE--EEEECCCHHHHHHHHHHHHHCCCCC-EEEEECCH
Q ss_conf 57787755442011147788-33886024642358888506856--9984475889999999788608996-49997689
Q gi|254781000|r 191 NAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSS 266 (371)
Q Consensus 191 N~~~~~~l~~~v~~~~~~~~-~~vlDLycG~G~fsl~La~~~~~--V~gvE~~~~ai~~A~~Na~~N~i~n-~~f~~~~a 266 (371)
T Consensus 13 ~~~lAa~l~~la----~~~~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~ 88 (171)
T pfam01170 13 KATLARAMVNLA----GWKPGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADA 88 (171)
T ss_pred CHHHHHHHHHHH----CCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf 899999999985----8999997886899878999999996135895367587999999999999828998469997666
Q ss_pred HHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCC---CCCHHHHHHHH-------HH-CC-CCEEEEECCHHHHHHHHHH
Q ss_conf 9998988623322223210101478779998697---02634899999-------85-39-9489992998999886998
Q gi|254781000|r 267 KEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP---RSGLDDATVGM-------VQ-AY-PHILYISCNPDSLCRDLSI 334 (371)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPP---R~G~~~~~~~~-------~~-~~-~~ivYVSCnp~TlarD~~~ 334 (371)
T Consensus 89 ~~l~----------------~~~~~~d~Iv~nPPYG~r~~~~~~~~~ly~~~~~~~~~~~~g~~~~i~~~~~~~~k~~~~ 152 (171)
T pfam01170 89 ADLP----------------LLNGSVDTIVTDPPYGIRIGSKGALEKLYPAFLDEAKRVLRGRLVFATPEKKDFEKAARE 152 (171)
T ss_pred HHCC----------------CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCC
T ss_conf 5387----------------987883189988982011365456999999999999986899789999686899998550