HHsearch alignment for GI: 254781000 and conserved domain: pfam02005
>pfam02005 TRM N2,N2-dimethylguanosine tRNA methyltransferase. This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria
Probab=98.33 E-value=1.5e-05 Score=55.40 Aligned_cols=118 Identities=22% Similarity=0.265 Sum_probs=83.9
Q ss_pred CCCHHHHHHHHHHEEEC--CCCCCCEEEEECCCCCHHHHHHHHC---CCEEEEECCCHHHHHHHHHHHHHCCCCC-EEEE
Q ss_conf 23577877554420111--4778833886024642358888506---8569984475889999999788608996-4999
Q gi|254781000|r 189 QPNAGINVHMLEWVLAA--TKGIQGDLLELYCGNGNFSLVLARH---FDRVLAVEIAKPSVEAARYNIAANHVNN-VKIV 262 (371)
Q Consensus 189 Q~N~~~~~~l~~~v~~~--~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~Na~~N~i~n-~~f~ 262 (371)
T Consensus 27 ~~NRDlsvl~i~~~~~~~~~~~~~~~iLDalsasGiR~iRya~E~~~~~~V~~NDi~~~a~~~i~~N~~lN~~~~~~~~~ 106 (375)
T pfam02005 27 EFNRDLSVTVIRQLNLLHKKLGRGIIVLDALSASGIRAIRFALEVPGVEEVFANDISPKAVELIKENVKLNEVENIVVIN 106 (375)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 02321999999999986430258866975467541999999974699866999559989999999988865998737875
Q ss_pred ECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCCCCHHHHHHH-HHHCCCC--EEEEEC
Q ss_conf 768999989886233222232101014787799986970263489999-9853994--899929
Q gi|254781000|r 263 RMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVG-MVQAYPH--ILYISC 323 (371)
Q Consensus 263 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~-~~~~~~~--ivYVSC 323 (371)
T Consensus 107 ~~DAn~lm~~~---------------~~~fD~IDlDPf--GSp~pfldsAi~av~~~GlL~vTa 153 (375)
T pfam02005 107 GDDANMLMREN---------------HRRFDVIDLDPF--GSPAPFLDSAVQSVKRGGLLCVTA 153 (375)
T ss_pred HHHHHHHHHHC---------------CCCCCEEEECCC--CCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 47599999855---------------886756867899--992177999999831598899994