HHsearch alignment for GI: 254781000 and conserved domain: pfam02384

>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=98.09  E-value=7e-06  Score=57.59  Aligned_cols=160  Identities=16%  Similarity=0.219  Sum_probs=92.0

Q ss_pred             HHHHCCCHHHHHHHHHHEEECCCCCC-CEEEEECCCCCHHHHHHHHCC---------CEEEEECCCHHHHHHHHHHHHHC
Q ss_conf             13312357787755442011147788-338860246423588885068---------56998447588999999978860
Q gi|254781000|r  185 NSFTQPNAGINVHMLEWVLAATKGIQ-GDLLELYCGNGNFSLVLARHF---------DRVLAVEIAKPSVEAARYNIAAN  254 (371)
Q Consensus       185 ~sFfQ~N~~~~~~l~~~v~~~~~~~~-~~vlDLycG~G~fsl~La~~~---------~~V~gvE~~~~ai~~A~~Na~~N  254 (371)
T Consensus        26 GeffTP-r~Vv~lmv~l----l~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lh  100 (312)
T pfam02384        26 GEFYTP-REVSKLIVEL----LEPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILH  100 (312)
T ss_pred             CEECCC-HHHHHHHHHH----HCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf             635887-8999999998----28999998821687733789999999998437855655636889989999999999984


Q ss_pred             CCCC--EEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCCCCHH------------------------HHH
Q ss_conf             8996--49997689999898862332222321010147877999869702634------------------------899
Q gi|254781000|r  255 HVNN--VKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD------------------------DAT  308 (371)
Q Consensus       255 ~i~n--~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~------------------------~~~  308 (371)
T Consensus       101 gi~~~~~~i~~gdsl~-------------~~-~~~~~~kfD~IlsNPPFg~k~~~~~~~~~~~~~~~~~~~~~~~~e~~F  166 (312)
T pfam02384       101 GIEYNDFGIRHGDTLL-------------SP-KFEEDKKFDVVVANPPFNQKWDANDNLENDPRFRAYGVPPKSNADFAF  166 (312)
T ss_pred             CCCCCCCCCCCCCCCC-------------CC-CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHH
T ss_conf             7988745521477655-------------76-766545511898378646676654321027211036878887442999


Q ss_pred             HH-HHHCCC---CEEEEECCHHHHHH-----HHH--HHCCCCEEEEEE--EEECCCCCCCEEEEEEEEEC
Q ss_conf             99-985399---48999299899988-----699--842696799999--97179898724899999985
Q gi|254781000|r  309 VG-MVQAYP---HILYISCNPDSLCR-----DLS--ILSTTHTIERLA--LFDQFPYTRHMECGVLLVRK  365 (371)
Q Consensus       309 ~~-~~~~~~---~ivYVSCnp~Tlar-----D~~--~l~~gy~i~~~~--~~D~FP~T~HvE~v~~l~R~  365 (371)
T Consensus       167 iqh~l~~Lk~~GraaiVlp~g-~Lf~~~~e~~iR~~lle~~-~l~aVI~LP~~lF~~tgi~t~ilv~~k~  234 (312)
T pfam02384       167 LQHIIYHLSPNGRAAVVLPNG-VLFRGGAEGDIRKALVEKD-LIEAVIALPPNLFYNTGIPTCILFLTKN  234 (312)
T ss_pred             HHHHHHHCCCCCEEEEEECCC-CCCCCCHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCEEEEEEECC
T ss_conf             999998569997699995582-3104650889999999759-7699995897753389984799999889