HHsearch alignment for GI: 254781000 and conserved domain: pfam04445
>pfam04445 DUF548 Protein of unknown function (DUF548). Protein of unknown function found in proteobacteria. In Salmonella typhimurium, expression of this protein is regulated by heat shock.
Probab=97.35 E-value=0.001 Score=43.41 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=55.2
Q ss_pred EEEEECCCCCHHHHHHHHCCCEEEEECCCHHH---HHHHHHHHHHCC------CCCEEEEECCHHHHHHHHHHCCCCCCC
Q ss_conf 38860246423588885068569984475889---999999788608------996499976899998988623322223
Q gi|254781000|r 212 DLLELYCGNGNFSLVLARHFDRVLAVEIAKPS---VEAARYNIAANH------VNNVKIVRMSSKEFTQAMRREREFNRL 282 (371)
Q Consensus 212 ~vlDLycG~G~fsl~La~~~~~V~gvE~~~~a---i~~A~~Na~~N~------i~n~~f~~~~a~~~~~~~~~~~~~~~~ 282 (371)
T Consensus 78 ~VlDATAGLG~DafiLAsLG~~VtliEr~pvl~~LL~Dal~RA~~~~~~~~~~~~rm~L~~gds~~~l~~~--------- 148 (235)
T pfam04445 78 TVLDATAGLGRDAFVLASLGCRVRLVERHPVVAALLEDGLQRAYQDPEIGAWLQARLHLLHGSSADQLEPN--------- 148 (235)
T ss_pred EEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCHHHHHHHHHCEEECCCHHHHHHHC---------
T ss_conf 38987877578899998189969999788999999999999987481557999962899838879997524---------
Q ss_pred CCCHHCCCCCCEEEECC
Q ss_conf 21010147877999869
Q gi|254781000|r 283 KDIDIHSYRFKTIFVDP 299 (371)
Q Consensus 283 ~~~~~~~~~~d~vilDP 299 (371)
T Consensus 149 ------~~~~DvIYLDP 159 (235)
T pfam04445 149 ------IDQPDVVYLDP 159 (235)
T ss_pred ------CCCCCEEEECC
T ss_conf ------68987899737