HHsearch alignment for GI: 254781000 and conserved domain: pfam05175

>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.47  E-value=3.6e-13  Score=105.13  Aligned_cols=107  Identities=26%  Similarity=0.424  Sum_probs=82.8

Q ss_pred             EEEEECCHHHHCCCHHH-HHHHHHHEEECCCCCCCEEEEECCCCCHHHHHHHHCC--CEEEEECCCHHHHHHHHHHHHHC
Q ss_conf             79997641331235778-7755442011147788338860246423588885068--56998447588999999978860
Q gi|254781000|r  178 LIYRQIENSFTQPNAGI-NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAAN  254 (371)
Q Consensus       178 ~~f~i~p~sFfQ~N~~~-~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~Na~~N  254 (371)
T Consensus         2 l~~~t~pGVFS~~~lD~Gt~lLl~~l~~---~~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n   78 (170)
T pfam05175         2 LTFKTLPGVFSHGRLDIGSRLLLSHLPK---PLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAAN   78 (170)
T ss_pred             CEEEECCCCCCCCCCCHHHHHHHHCCCC---CCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHH
T ss_conf             2899559887999879899999970897---7899499977648298999999789867985154499999999999980


Q ss_pred             CCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCC-CCH
Q ss_conf             89964999768999989886233222232101014787799986970-263
Q gi|254781000|r  255 HVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPR-SGL  304 (371)
Q Consensus       255 ~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR-~G~  304 (371)
T Consensus        79 ~l~~v~v~~~D~~~~-----------------~~~~~fD~IvsNPP~h~g~  112 (170)
T pfam05175        79 GLENGEVFWSDLYSA-----------------VEPGKFDLIISNPPFHAGK  112 (170)
T ss_pred             CCCEEEEEECCCCCC-----------------CCCCCEEEEEECCCCCCCC
T ss_conf             998489997446665-----------------7788660899897721142