HHsearch alignment for GI: 254781000 and conserved domain: pfam05401
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=97.84 E-value=2.1e-05 Score=54.42 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=58.8
Q ss_pred CEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCC
Q ss_conf 33886024642358888506856998447588999999978860899649997689999898862332222321010147
Q gi|254781000|r 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSY 290 (371)
Q Consensus 211 ~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 290 (371)
T Consensus 45 ~~alE~GCa~G~lT~~LA~RCdrLla~Dvs~~Av~~Ar~--Rla~~~hV~v~~~~vp-----------------~~wP~~ 105 (201)
T pfam05401 45 ANALEVGCAAGAFTERLAPYCQRLTVIDVMPEAIARARL--RMKKWSHISWIVSDVQ-----------------QFSTNE 105 (201)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH--HHCCCCCCEEEECCCC-----------------CCCCCC
T ss_conf 002043566248789999987467321362999999999--8557998289825666-----------------659988
Q ss_pred CCCEEEE
Q ss_conf 8779998
Q gi|254781000|r 291 RFKTIFV 297 (371)
Q Consensus 291 ~~d~vil 297 (371)
T Consensus 106 ~FDLIV~ 112 (201)
T pfam05401 106 LFDLIVV 112 (201)
T ss_pred CEEEEEE
T ss_conf 8627975