>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.

Probab=100.00 E-value=0 Score=680.84 Aligned_cols=353 Identities=63% Similarity=1.042 Sum_probs=335.0 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEECCCCCCEEECCCCCCCCHHHHHHHH Q ss_conf 98999999999999998651887763028987682268999999768916999982899737975637458889999999 Q gi|254781000|r 9 QYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFDQQTKERMRIDYFMPGSLLINALMI 88 (371) Q Consensus 9 ~Y~~QL~~K~~~v~~~l~r~~~~~~~i~~s~~~~YRnr~~l~v~~~~~~~~~g~~~~~s~~iv~i~~C~i~~~~i~~~~~ 88 (371) T Consensus 1 ~Y~~QL~~K~~~v~~~l~~~~~~~~~i~~sp~~~YRnk~~~~v~~~~~~~~~g~~~~~s~~~v~i~~c~i~~~~in~~~~ 80 (353) T pfam05958 1 QYTAQLAEKVSRLKDLFAPFDAPEPEVFESPDKHYRMRAEFRIWHEGDDLYYAMFDQQTKSKIRVDQFPAASELINRLMP 80 (353) T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEEEEEEEECCCEEEEEEECCCCCCEECCCCCCCCHHHHHHHH T ss_conf 92899999999999998605899971468972036776798989989937999997799980779988677889999999 Q ss_pred HHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCCCEE Q ss_conf 99986440885334257878898049949999973777895589999999975321341689725379828960566414 Q gi|254781000|r 89 EMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVD 168 (371) Q Consensus 89 ~l~~~~~~~~~l~~~l~~i~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 168 (371) T Consensus 81 ~l~~~~~~~~~~~~~~~~i~~~~~~~~e~~v~l~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~g~~~i~ 156 (353) T pfam05958 81 ALIAALRQNPALRHKLFQVDFLTTLSGEALVSLLYHKQLDDEWRQAAEALKDI----KLNVNLIGRARKKKIVLDQDYVD 156 (353) T ss_pred HHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHH----CCCEEEEECCCCCEEEECCCEEE T ss_conf 99999875754142047899999518828999994466657899999998741----25547985278726980576178 Q ss_pred EEEEECCCEEEEEECCHHHHCCCHHHHHHHHHHEEECCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHH Q ss_conf 89996791279997641331235778775544201114778833886024642358888506856998447588999999 Q gi|254781000|r 169 ERLTVAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248 (371) Q Consensus 169 e~l~~~~~~~~f~i~p~sFfQ~N~~~~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~ 248 (371) T Consensus 157 e~l~~~~~~~~~~~~p~sFfQvN~~~~~~l~~~a~~~~~~~~~~vlDlYcG~Gtfsl~lA~~~~~V~GvE~~~~AV~~A~ 236 (353) T pfam05958 157 ETLPVAGREFIYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ 236 (353) T ss_pred EEEEECCCEEEEEECCCCEECCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHH T ss_conf 99876782259985899977869899999999999986268995899846888888999864787999962599999999 Q ss_pred HHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHH Q ss_conf 97886089964999768999989886233222232101014787799986970263489999985399489992998999 Q gi|254781000|r 249 YNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPHILYISCNPDSL 328 (371) Q Consensus 249 ~Na~~N~i~n~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYVSCnp~Tl 328 (371) T Consensus 237 ~Na~~N~i~Nv~f~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~vvlDPPR~G~~~~~~~~i~~~~rIvYVSCnP~Tl 316 (353) T pfam05958 237 YNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETL 316 (353) T ss_pred HHHHHCCCCCEEEEECCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCCEEEEECCHHHH T ss_conf 98998699864999728999999875242233203666322467725848987777399999984699689994899999 Q ss_pred HHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEEEEC Q ss_conf 8869984269679999997179898724899999985 Q gi|254781000|r 329 CRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVRK 365 (371) Q Consensus 329 arD~~~l~~gy~i~~~~~~D~FP~T~HvE~v~~l~R~ 365 (371) T Consensus 317 aRDl~~L~~~Y~l~~v~pvDmFPqT~HvE~V~lL~rK 353 (353) T pfam05958 317 KANLEQLSETHRVERFALFDQFPYTHHMECGVLLERK 353 (353) T ss_pred HHHHHHHHCCCEEEEEEEECCCCCCCEEEEEEEEECC T ss_conf 9999998406478799982369999718989999809

HHsearch alignment for GI: 254781000 and conserved domain: pfam05958