HHsearch alignment for GI: 254781000 and conserved domain: pfam07091
>pfam07091 FmrO Ribosomal RNA methyltransferase (FmrO). This family consists of several bacterial ribosomal RNA methyltransferase (aminoglycoside-resistance methyltransferase) proteins.
Probab=91.96 E-value=0.57 Score=25.57 Aligned_cols=113 Identities=18% Similarity=0.188 Sum_probs=69.6
Q ss_pred HHHHHHHEEECCCCCCCEEEEECCCCCHHHHHH---HHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
Q ss_conf 775544201114778833886024642358888---50685699844758899999997886089964999768999989
Q gi|254781000|r 195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL---ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271 (371)
Q Consensus 195 ~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl~L---a~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~ 271 (371)
T Consensus 89 ld~fY~~if~~~~-~p~sVlDlaCGlNPLa~pwm~~~~~-~~Y~a~DId~~~i~fi~~~l~~l~v~~-~~~~~Dl~~--- 162 (248)
T pfam07091 89 LDEFYAEIFGALP-PPRSVLDLACGLNPLAVPWMPLAPD-ATYHAYDIDRALIEFIRAFLALLGVPG-EVRVRDLLT--- 162 (248)
T ss_pred HHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCCCCCC-CEEEEEECCHHHHHHHHHHHHHCCCCC-CEEEEEECC---
T ss_conf 8999999983489-9864420002688301423368998-679997077789999999998629876-379876104---
Q ss_pred HHHHCCCCCCCCCCHHCCCCCCEE-------EECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHH
Q ss_conf 886233222232101014787799-------9869702634899999853994899929989998
Q gi|254781000|r 272 AMRREREFNRLKDIDIHSYRFKTI-------FVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC 329 (371)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~d~v-------ilDPPR~G~~~~~~~~~~~~~~ivYVSCnp~Tla 329 (371)
T Consensus 163 --------------~~p~~~~DvaLllK~lp~LE~q~~G~g~~ll~~l~-~~~vV-VSFPtrsLg 211 (248)
T pfam07091 163 --------------DPPAEPADVALLLKTLPLLEQQRRGAGLDLLDALN-APHVV-VSFPTRSLG 211 (248)
T ss_pred --------------CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHC-CCEEE-EECCCCCCC
T ss_conf --------------79988734004755277898870260789999837-98389-965641226