HHsearch alignment for GI: 254781000 and conserved domain: pfam07091

>pfam07091 FmrO Ribosomal RNA methyltransferase (FmrO). This family consists of several bacterial ribosomal RNA methyltransferase (aminoglycoside-resistance methyltransferase) proteins.
Probab=91.96  E-value=0.57  Score=25.57  Aligned_cols=113  Identities=18%  Similarity=0.188  Sum_probs=69.6

Q ss_pred             HHHHHHHEEECCCCCCCEEEEECCCCCHHHHHH---HHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
Q ss_conf             775544201114778833886024642358888---50685699844758899999997886089964999768999989
Q gi|254781000|r  195 NVHMLEWVLAATKGIQGDLLELYCGNGNFSLVL---ARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ  271 (371)
Q Consensus       195 ~~~l~~~v~~~~~~~~~~vlDLycG~G~fsl~L---a~~~~~V~gvE~~~~ai~~A~~Na~~N~i~n~~f~~~~a~~~~~  271 (371)
T Consensus        89 ld~fY~~if~~~~-~p~sVlDlaCGlNPLa~pwm~~~~~-~~Y~a~DId~~~i~fi~~~l~~l~v~~-~~~~~Dl~~---  162 (248)
T pfam07091        89 LDEFYAEIFGALP-PPRSVLDLACGLNPLAVPWMPLAPD-ATYHAYDIDRALIEFIRAFLALLGVPG-EVRVRDLLT---  162 (248)
T ss_pred             HHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCCCCCC-CEEEEEECCHHHHHHHHHHHHHCCCCC-CEEEEEECC---
T ss_conf             8999999983489-9864420002688301423368998-679997077789999999998629876-379876104---


Q ss_pred             HHHHCCCCCCCCCCHHCCCCCCEE-------EECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHH
Q ss_conf             886233222232101014787799-------9869702634899999853994899929989998
Q gi|254781000|r  272 AMRREREFNRLKDIDIHSYRFKTI-------FVDPPRSGLDDATVGMVQAYPHILYISCNPDSLC  329 (371)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~d~v-------ilDPPR~G~~~~~~~~~~~~~~ivYVSCnp~Tla  329 (371)
T Consensus       163 --------------~~p~~~~DvaLllK~lp~LE~q~~G~g~~ll~~l~-~~~vV-VSFPtrsLg  211 (248)
T pfam07091       163 --------------DPPAEPADVALLLKTLPLLEQQRRGAGLDLLDALN-APHVV-VSFPTRSLG  211 (248)
T ss_pred             --------------CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHC-CCEEE-EECCCCCCC
T ss_conf             --------------79988734004755277898870260789999837-98389-965641226