HHsearch alignment for GI: 254781000 and conserved domain: pfam08704
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=98.37 E-value=1.7e-05 Score=55.07 Aligned_cols=162 Identities=12% Similarity=0.147 Sum_probs=99.7
Q ss_pred EEECCHHHHCCCHHHHHHHHH----HEEECCCCCC-CEEEEECCCCCHHHHHHHHCC---CEEEEECCCHHHHHHHHHHH
Q ss_conf 997641331235778775544----2011147788-338860246423588885068---56998447588999999978
Q gi|254781000|r 180 YRQIENSFTQPNAGINVHMLE----WVLAATKGIQ-GDLLELYCGNGNFSLVLARHF---DRVLAVEIAKPSVEAARYNI 251 (371)
Q Consensus 180 f~i~p~sFfQ~N~~~~~~l~~----~v~~~~~~~~-~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~Na 251 (371)
T Consensus 68 l~Pt~e~~t~~mprrtQIiYpkD~s~I~~~ldi~PG~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~ 147 (309)
T pfam08704 68 LQPTPELWTLALPHRTQILYTPDISLIIMMLELKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEF 147 (309)
T ss_pred ECCCHHHHHHCCCCCCCEECCCCHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 78999999844888773255600999999809899999998367842999999997488865999844789999999999
Q ss_pred HHCCCC-CEEEEECCHH-HHHHHHHHCCCCCCCCCCHHCCCCCCEEEECCCCCCHH-HHHHHHHHCCC-CE-EEEECCHH
Q ss_conf 860899-6499976899-99898862332222321010147877999869702634-89999985399-48-99929989
Q gi|254781000|r 252 AANHVN-NVKIVRMSSK-EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGLD-DATVGMVQAYP-HI-LYISCNPD 326 (371)
Q Consensus 252 ~~N~i~-n~~f~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~~-~~~~~~~~~~~-~i-vYVSCnp~ 326 (371)
T Consensus 148 ~~~g~~~~v~~~~rDv~~~gf~~--------------~~~~~~D~VfLDlp~PW~ai~~~~~~Lk~~Gg~l~~f~P~-ie 212 (309)
T pfam08704 148 REHGLDSLVTVTHRDVCKSGFDT--------------EVSNKADAVFLDLPAPWEAIPHAAKALKVEGGRLCSFSPC-IE 212 (309)
T ss_pred HHCCCCCCEEEEECCHHCCCCCC--------------CCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCC-HH
T ss_conf 87498750588985200136664--------------4566435899758997998899998606899689999198-99
Q ss_pred HHHHHHHHHCC-CCEEEEEEEEECCCCCCCEEE
Q ss_conf 99886998426-967999999717989872489
Q gi|254781000|r 327 SLCRDLSILST-THTIERLALFDQFPYTRHMEC 358 (371)
Q Consensus 327 TlarD~~~l~~-gy~i~~~~~~D~FP~T~HvE~ 358 (371)
T Consensus 213 Qv~r~~~aL~~~gF--~~i~t~E~l~R~~~vr~ 243 (309)
T pfam08704 213 QVQRTCLALAALGF--TEIETIEVLPRQYDVRT 243 (309)
T ss_pred HHHHHHHHHHHCCC--CCEEEEEEEEEEEEEEE
T ss_conf 99999999997799--74079999535899985