>gi|24115259|ref|NP_709769.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 301] Length = 366
>gi|30064744|ref|NP_838915.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 2457T] Length = 366
>gi|82546316|ref|YP_410263.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii Sb227] Length = 366
>gi|50401541|sp|Q820Z9|TRMA_SHIFL RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT Length = 366
>gi|123558094|sp|Q31U23|TRMA_SHIBS RecName: Full=tRNA (uracil-5-)-methyltransferase; AltName: Full=tRNA(M-5-U54)-methyltransferase; Short=RUMT Length = 366
>gi|24054550|gb|AAN45476.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 301] Length = 366
>gi|30043004|gb|AAP18726.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 2457T] Length = 366
>gi|81247727|gb|ABB68435.1| tRNA (uracil-5-)-methyltransferase [Shigella boydii Sb227] Length = 366
>gi|281603359|gb|ADA76343.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2002017] Length = 366
>gi|313648863|gb|EFS13302.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2a str. 2457T] Length = 366
>gi|332751536|gb|EGJ81935.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 4343-70] Length = 366
>gi|332751807|gb|EGJ82204.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-671] Length = 366
>gi|332752553|gb|EGJ82939.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2747-71] Length = 366
>gi|332764486|gb|EGJ94718.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri 2930-71] Length = 366
>gi|332997951|gb|EGK17557.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri VA-6] Length = 366
>gi|333014014|gb|EGK33374.1| tRNA (uracil-5-)-methyltransferase [Shigella flexneri K-304] Length = 366

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 246/361 (68%), Positives = 291/361 (80%)

Query: 5   LLIDQYEQQLAEKVDRLRQMMLAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDDLYHIMFD 64
           L  +QYE QLAEKV RL+ MM  F     ++FRS   HYRMRAEF IWHDGDDLYHI+FD
Sbjct: 6   LPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFD 65

Query: 65  QQTKERMRIDYFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVTLIYH 124
           QQTK R+R+D F   S LIN LM  M+A +R  P+LR KLFQIDYLT+ S+QA+V+L+YH
Sbjct: 66  QQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYH 125

Query: 125 RLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIYRQIE 184
           + LDD WR+ A  LRDAL A+   + LIGRA KTKI LD+DY+DERL VAG+ +IYRQ+E
Sbjct: 126 KKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTKIALDQDYIDERLPVAGKEMIYRQVE 185

Query: 185 NSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSV 244
           NSFTQPNA +N+ MLEW L  TKG +GDLLELYCGNGNFSL LAR+FDRVLA EIAKPSV
Sbjct: 186 NSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSV 245

Query: 245 EAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPPRSGL 304
            AA+YNIAANH++NV+I+RM+++EFTQAM   REFNRL+ ID+ SY+F+TIFVDPPRSGL
Sbjct: 246 AAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQFETIFVDPPRSGL 305

Query: 305 DDATVGMVQAYPHILYISCNPDSLCRDLSILSTTHTIERLALFDQFPYTRHMECGVLLVR 364
           D  T  MVQAYP ILYISCNP++LC++L  LS TH +ERLALFDQFPYT HMECGVLL  
Sbjct: 306 DSETEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTA 365

Query: 365 K 365
           K
Sbjct: 366 K 366