RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781000|ref|YP_003065413.1| tRNA
(uracil-5-)-methyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(371 letters)
>gnl|CDD|32446 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 269 bits (689), Expect = 9e-73
Identities = 112/363 (30%), Positives = 167/363 (46%), Gaps = 27/363 (7%)
Query: 9 QYEQQLAEKVDRLRQMM----LAFQVPNLQIFRSEPIHYRMRAEFHIWHDGDD-LYHIMF 63
YE QL K ++L++++ + + + S P YR RA F + G L F
Sbjct: 84 SYEAQLEFKREQLKELLKRIGGSEVEIDPTVGMSPPWGYRNRARFSVRGSGKGQLLAGFF 143
Query: 64 DQQTKERMRID---YFMPGSLLINALMIEMMATIRLEPLLRAKLFQIDYLTSQSDQAIVT 120
Q + E + ID F P S I L+ E++A + L P K I L + V
Sbjct: 144 RQGSHEIVDIDECPVFPPRSNEILPLLRELLAKLGLPPYNEKKKKGILRLIVLREGQEVM 203
Query: 121 LIYHRLLDDAWRECAIRLRDALHARKYQIQLIGRANKTKICLDRDYVDERLTVAGRTLIY 180
+ + L +A K +Q I RA I D + L + R +
Sbjct: 204 VRLVTKHLPELEQALRELLEAFPEIKGIVQNINRAKTNVIEGDEEITLYGLE-SIREGVS 262
Query: 181 RQIEN-SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVE 238
QI SF Q N + + E L + G+ +L+LYCG G F L LA+ +V VE
Sbjct: 263 FQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVE 322
Query: 239 IAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVD 298
I+ +VEAA+ N AAN ++NV+ + ++EFT A Y+ + VD
Sbjct: 323 ISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAW-------------WEGYKPDVVVVD 369
Query: 299 PPRSGLDDATVGMVQAY--PHILYISCNPDSLCRDLSILSTTH-TIERLALFDQFPYTRH 355
PPR+G D + + I+Y+SCNP +L RDL+IL++T IER+ FD FP+T H
Sbjct: 370 PPRAGADREVLKQLAKLKPKRIVYVSCNPATLARDLAILASTGYEIERVQPFDMFPHTHH 429
Query: 356 MEC 358
+E
Sbjct: 430 VEA 432
>gnl|CDD|37398 KOG2187, KOG2187, KOG2187, tRNA uracil-5-methyltransferase and
related tRNA-modifying enzymes [Translation, ribosomal
structure and biogenesis].
Length = 534
Score = 80.8 bits (199), Expect = 6e-16
Identities = 59/208 (28%), Positives = 86/208 (41%), Gaps = 33/208 (15%)
Query: 173 VAGRTLIYRQIEN-SFT-QPNA--GINVHMLEWVLAATKGIQGDL------LELYCGNGN 222
V G I + +F P A N E VL +T G L L++ CG G
Sbjct: 338 VGGDPYITESLLGLTFRISPGAFFQTNTSAAE-VLYSTIGEWAGLPADKTLLDVCCGTGT 396
Query: 223 FSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRL 282
L LAR RV+ VEI+ +VE A N N ++N F + E F L
Sbjct: 397 IGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNA--------TFIVG-QAEDLFPSL 447
Query: 283 KDIDIHSYRFKTIFVDPPRSGLDDATVGMVQAYPH---ILYISCNPDSLCRDLSILSTT- 338
S I +DPPR GL + ++AY + ++Y+SCNP + R++ L ++
Sbjct: 448 LTPCCDSETLVAI-IDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCSSP 506
Query: 339 --------HTIERLALFDQFPYTRHMEC 358
+ + D FP+T H E
Sbjct: 507 KYRLKKGFFRLVKAVGVDLFPHTPHCEM 534
>gnl|CDD|32642 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 46.4 bits (110), Expect = 1e-05
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 211 GDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHVNNVKIVR 263
G +L+L CG G LVLA+ ++ V++ +VE+AR N+AAN V N ++
Sbjct: 160 GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWA 214
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.)..
Length = 107
Score = 43.6 bits (103), Expect = 8e-05
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 212 DLLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
+L+L CG G +L LA RV V+I+ ++E AR AA +NV+++
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVL 52
>gnl|CDD|147386 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 43.3 bits (103), Expect = 1e-04
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 211 GDLLELYCGNGNFSLVLARHFDR--VLAVEIAKPSVEAARYNIAANHVNNVKIV 262
G +L+L CG G LA+ V V+I ++E+AR N+AAN + N ++
Sbjct: 33 GKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVF 86
>gnl|CDD|31085 COG0742, COG0742, N6-adenine-specific methylase [DNA replication,
recombination, and repair].
Length = 187
Score = 41.8 bits (98), Expect = 3e-04
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 15/89 (16%)
Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAA-NHVNNVKIVRMSSKEFTQ 271
L+L+ G+G L L+R RV+ VE + +V+ + N+ A +++R + +
Sbjct: 48 LDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALK 107
Query: 272 AMRREREFNRLKDIDIHSYRFKTIFVDPP 300
+ F+ +F+DPP
Sbjct: 108 QLGTREPFDL-------------VFLDPP 123
>gnl|CDD|31289 COG1092, COG1092, Predicted SAM-dependent methyltransferases
[General function prediction only].
Length = 393
Score = 41.8 bits (98), Expect = 3e-04
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 16/114 (14%)
Query: 191 NAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAAR 248
G + + A + G +L L+ G FS+ A V +V+++K ++E AR
Sbjct: 198 KTGFFLDQRDNRRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWAR 257
Query: 249 YNIAANHV--NNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
N N + + + + ++ + R E +F I +DPP
Sbjct: 258 ENAELNGLDGDRHRFIVGDVFKWLRKAERRGE------------KFDLIILDPP 299
>gnl|CDD|33880 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 40.6 bits (95), Expect = 8e-04
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 211 GDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV-NNVKIVRMSSK 267
G +L+L GNG L+LA+ + +++ VEI + + E A+ N+A N + ++++ K
Sbjct: 46 GRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIK 105
Query: 268 EFTQAMRREREFNRLKDIDIHSYRFKTIFVDPP 300
EF +A+ F I +PP
Sbjct: 106 EFLKALVFA--------------SFDLIICNPP 124
>gnl|CDD|30569 COG0220, COG0220, Predicted S-adenosylmethionine-dependent
methyltransferase [General function prediction only].
Length = 227
Score = 39.1 bits (91), Expect = 0.002
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 214 LELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
LE+ G G F + +A+ L +EI P V A I + N++++ + E
Sbjct: 53 LEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLD 112
Query: 272 AMRREREFNRL 282
+ + +++
Sbjct: 113 YLIPDGSLDKI 123
>gnl|CDD|32590 COG2520, COG2520, Predicted methyltransferase [General function
prediction only].
Length = 341
Score = 38.7 bits (90), Expect = 0.003
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 213 LLELYCGNGNFSLVLARHFDR-VLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFT 270
+L+++ G G FS+ +A+ V A++I +VE + NI N V V+ + ++E
Sbjct: 192 VLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA 251
Query: 271 QAMRREREFNR 281
+R
Sbjct: 252 ---PELGVADR 259
>gnl|CDD|145554 pfam02475, Met_10, Met-10+ like-protein. The methionine-10 mutant
allele of N. crassa codes for a protein of unknown
function. However, homologous proteins have been found
in yeast suggesting this protein may be involved in
methionine biosynthesis, transport and/or utilisation.
Length = 199
Score = 38.1 bits (89), Expect = 0.004
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 214 LELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAARYNIAANHVNN-VKIVRMSSKEFT 270
++++ G G FS+ +A+H RV AVE+ +V+ + NI N V + + ++
Sbjct: 105 VDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDVI 164
>gnl|CDD|32715 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 37.7 bits (87), Expect = 0.005
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 199 LEWVLAATKGIQGDLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNIAANHV 256
+E LA + +L+L G+G ++ LA+ V+AV+I+ ++ AR N N +
Sbjct: 100 VEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL 159
Query: 257 NNVKIVRMS 265
V +V+
Sbjct: 160 VRVLVVQSD 168
>gnl|CDD|146308 pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.
Length = 181
Score = 36.5 bits (85), Expect = 0.011
Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 20/118 (16%)
Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
L+L+ G+G L L+R V+ VE K +V + N+ A + + +++ +
Sbjct: 48 LDLFAGSGALGLEALSRGASSVVFVEKDKKAVATLKENLEALGLEGAVLRMDAARALLRL 107
Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPP-RSGLDDATVGMVQAYPHILYISCNPDSLC 329
+ F+ +F+DPP GL + + ++ + NP++L
Sbjct: 108 AGKGPPFDL-------------VFLDPPYAKGLIEEALELLAEKGWL-----NPNALI 147
>gnl|CDD|145502 pfam02390, Methyltransf_4, Putative methyltransferase. This is a
family of putative methyltransferases. The aligned
region contains the GXGXG S-AdoMet binding site
suggesting a putative methyltransferase activity.
Length = 199
Score = 35.4 bits (82), Expect = 0.028
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 209 IQGDLLELYCGNGNFSLVLARHF--DRVLAVEIAKPSVEAA-RYNIAANHVNNVKIVRMS 265
Q LE+ CG G+F + +A+ + +EI P V+ A + IA + N++I+
Sbjct: 20 EQPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIALRGLQNLRILCGD 79
Query: 266 SKEFTQAMRREREFNRL 282
+ + + + ++
Sbjct: 80 AMKLLPNLFPDGSLQKI 96
>gnl|CDD|32588 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 34.8 bits (80), Expect = 0.039
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN 257
ML+ L G +LE+ G+G + VLAR RV+++E + E AR N+
Sbjct: 64 MLQL-LELKPG--DRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE 120
Query: 258 NVKIV 262
NV +
Sbjct: 121 NVTVR 125
>gnl|CDD|37289 KOG2078, KOG2078, KOG2078, tRNA modification enzyme [RNA processing
and modification].
Length = 495
Score = 34.3 bits (78), Expect = 0.050
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVN--NVKIVRMSSKEF 269
+ +++ G G F+L A+ RV A ++ S++ + NI N V+ ++I M +K+F
Sbjct: 253 VCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311
>gnl|CDD|33834 COG4076, COG4076, Predicted RNA methylase [General function
prediction only].
Length = 252
Score = 33.8 bits (77), Expect = 0.086
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 209 IQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIV 262
+ +L G+G S+V A +RV+A+E A N+ N ++V
Sbjct: 32 AEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVV 85
>gnl|CDD|32445 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 33.3 bits (76), Expect = 0.12
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 213 LLELYCGNGNFSLVLAR-HFDRVLAVEIAKPSVEAARYNIAANHVNNV 259
+L++ CG+G ++ A+ +V+ V+I +VEAAR N N V +
Sbjct: 166 VLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELL 213
>gnl|CDD|32444 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 31.7 bits (72), Expect = 0.31
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 21/88 (23%)
Query: 214 LELYCGNGNFSL-VLARHFDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQA 272
L+L G G ++ RVLAV+I ++E AR N +V+ V +F
Sbjct: 50 LDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLG-DVEFVVADVSDF--- 105
Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPP 300
+F T+ ++PP
Sbjct: 106 ----------------RGKFDTVIMNPP 117
>gnl|CDD|30493 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation,
ribosomal structure and biogenesis].
Length = 355
Score = 31.6 bits (71), Expect = 0.33
Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 18/88 (20%)
Query: 233 RVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQAMRREREFNRLKDIDIHSYRF 292
V+AV+++ ++ R N+ V NV +V ++ RL ++ +F
Sbjct: 184 IVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDAR-------------RLAELLPGGEKF 230
Query: 293 KTIFVDPPRSGLDDATVGMVQAYPHILY 320
I +D P SG G+++ P + +
Sbjct: 231 DRILLDAPCSGT-----GVIRRDPDVKW 253
>gnl|CDD|39706 KOG4506, KOG4506, KOG4506, Uncharacterized conserved protein
[Function unknown].
Length = 598
Score = 31.3 bits (70), Expect = 0.47
Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 8/128 (6%)
Query: 109 YLTSQSDQAIVTLIYHRLLDDAWRECAIRLRD-ALHARKYQIQLIGRANKTKI---CLDR 164
+ S + + + +H +DD + I RD A+ + I+ R + + I L
Sbjct: 423 LIQDHSCLSEIHIAFHLCVDDHLKSGEINARDPAIAGLRNIIKTAARHDISTIHIPLLLI 482
Query: 165 DYVDERLTVA----GRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGN 220
D +DE +T+A L+++ I FT + ++ K +LE C +
Sbjct: 483 DDMDEEMTIAWCLKRAELLFKCIFGPFTNKTSLGTRREGLFLCKRLKLRPDFMLEEACAD 542
Query: 221 GNFSLVLA 228
G ++A
Sbjct: 543 GEIIDIMA 550
>gnl|CDD|38220 KOG3010, KOG3010, KOG3010, Methyltransferase [General function
prediction only].
Length = 261
Score = 30.7 bits (69), Expect = 0.63
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 199 LEWV--LAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYNIAANHV 256
+W +A+ ++ GNG + +A H+ V+A +++ A +A H
Sbjct: 21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVS-----EAMLKVAKKHP 75
Query: 257 NNV---KIVRMSSKE 268
MSS E
Sbjct: 76 PVTYCHTPSTMSSDE 90
>gnl|CDD|109456 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 258
Score = 30.3 bits (69), Expect = 0.95
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 210 QGDLLELYCGNGNFSLVLARHFDRVLAVEI 239
+LE+ G G + LA+ +V+A+EI
Sbjct: 31 SDTVLEIGPGKGALTEELAKRAKQVVAIEI 60
>gnl|CDD|30619 COG0270, Dcm, Site-specific DNA methylase [DNA replication,
recombination, and repair].
Length = 328
Score = 30.0 bits (67), Expect = 0.98
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 213 LLELYCGNGNFSLVLARH-FDRVLAVEIAKPSVEAARYNIAANHVNNVKIVRMSSKEFTQ 271
+++L+ G G SL F+ V A EI P+V + N + I + + +
Sbjct: 6 VIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRK 65
>gnl|CDD|32409 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 29.9 bits (67), Expect = 1.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 211 GDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
+L++ CG G S LAR V ++ ++ +E A+
Sbjct: 61 LRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAK 98
>gnl|CDD|30380 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 29.4 bits (66), Expect = 1.7
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 186 SFTQPNAGINVHMLEWVLAATKGIQGD-LLELYCGNGNFSLVLARHFDRVLAVEI 239
Q N I+ ++++ ++ A GD +LE+ G G + L RV A+EI
Sbjct: 7 RLGQ-NFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEI 60
>gnl|CDD|37118 KOG1907, KOG1907, KOG1907, Phosphoribosylformylglycinamidine
synthase [Nucleotide transport and metabolism].
Length = 1320
Score = 28.4 bits (63), Expect = 3.3
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 191 NAGINVHMLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAARYN 250
+ G+ V +LE A GI+ DL F ++ A VL E++ +E
Sbjct: 904 DGGLLVTLLEMAFAGNVGIEIDLDSPNQNIKLFDILFAEELGAVL--EVSDTDLEKVLEI 961
Query: 251 IAANHVNNVKIVRMSS 266
+ V I + S+
Sbjct: 962 FSEAGVKCEYIGKASA 977
>gnl|CDD|32945 COG3131, MdoG, Periplasmic glucans biosynthesis protein [Inorganic
ion transport and metabolism].
Length = 534
Score = 28.4 bits (63), Expect = 3.7
Identities = 8/41 (19%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 273 MRREREFNRLKDIDIHSYRFKTIFVDPPRSGLDDATVGMVQ 313
++R+R+F+ +D+ + +++V+ P+ V +V+
Sbjct: 334 LQRDRDFSHYQDLGDRYEKRPSLWVE-PKGKWGKGAVELVE 373
>gnl|CDD|36714 KOG1501, KOG1501, KOG1501, Arginine N-methyltransferase [General
function prediction only].
Length = 636
Score = 28.1 bits (62), Expect = 4.1
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 214 LELYCGNGNFSLVLARHF-DRVLAVEIAKPSVEAARYNIAAN-HVNNVKIVRMSSKEFTQ 271
L++ G G S++ R D V A E+ KP V+ AR + N + + ++ S E
Sbjct: 71 LDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKV 130
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 27.5 bits (61), Expect = 5.8
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 2 SGTLLIDQYEQQLAEKVDRLRQMM-LAFQVPNLQIFRSE 39
SG +L+D + + + LRQ + L FQ P+ Q+F
Sbjct: 58 SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPT 96
>gnl|CDD|114142 pfam05401, NodS, Nodulation protein S (NodS). This family consists
of nodulation S (NodS) proteins. The products of the
rhizobial nodulation genes are involved in the
biosynthesis of lipochitin oligosaccharides (LCOs),
which are host-specific signal molecules required for
nodule formation. NodS is an S-adenosyl-L-methionine
(SAM)-dependent methyltransferase involved in N
methylation of LCOs. NodS uses N-deacetylated
chitooligosaccharides, the products of the NodBC
proteins, as its methyl acceptors.
Length = 201
Score = 27.4 bits (61), Expect = 6.3
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 198 MLEWVLAATKGIQGDLLELYCGNGNFSLVLARHFDRVLAVEIAKPSVEAAR 248
ML LA +G + LE+ C G F+ LA + R+ +++ ++ AR
Sbjct: 34 MLRLSLA--QGTIANALEVGCAAGAFTERLAPYCQRLTVIDVMPEAIARAR 82
>gnl|CDD|31406 COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell
envelope biogenesis, outer membrane].
Length = 239
Score = 27.1 bits (60), Expect = 8.1
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 173 VAGRTLIYRQIENSFTQPNAGINVHMLEWVLAATKGIQGDLLELYCGNGNF 223
V GR +IYR IEN V T G + DL+E + F
Sbjct: 28 VGGREIIYRTIENLAKAGITEFVV--------VTNGYRADLVEEFLKKYPF 70
>gnl|CDD|143279 cd05871, Ig_Semaphorin_classIII, Immunoglobulin (Ig)-like domain of
class III semaphorin. Ig_Semaphorin_class III;
Immunoglobulin (Ig)-like domain of class III
semaphorins. Semaphorins are classified into various
classes on the basis of structural features additional
to the Sema domain. Class III semaphorins are a
vertebrate class having a Sema domain, an Ig domain, a
short basic domain, and are secreted. They have been
shown to be axonal guidance cues and have a part in the
regulation of the cardiovascular, immune and respiratory
systems. Sema3A, the prototype member of this class III
subfamily, induces growth cone collapse and is an
inhibitor of axonal sprouting. In perinatal rat cortex
as a chemoattractant, it functions to direct, for
pyramidal neurons, the orientated extension of apical
dendrites. It may play a role, prior to the development
of apical dendrites, in signaling the radial migration
of newborn cortical neurons towards the upper layers.
Sema3A selectively inhibits vascular endothelial growth
factor receptor (VEGF)-induced angiogenesis and induces
microvascular permeability. This group also includes
Sema3B, -C, -D, -E, -G.
Length = 91
Score = 27.0 bits (60), Expect = 8.5
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 13/47 (27%)
Query: 167 VDERLTVAGRTLIYRQI-------------ENSFTQPNAGINVHMLE 200
+ERL R L+ R + E+SF+Q A +H++E
Sbjct: 44 TEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTLHVIE 90
>gnl|CDD|38110 KOG2899, KOG2899, KOG2899, Predicted methyltransferase [General
function prediction only].
Length = 288
Score = 26.9 bits (59), Expect = 8.9
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 212 DLLELYCGNGNFSLVLARHFD--RVLAVEIAKPSVEAARYNI 251
L++ C +G +L +A+ F R+L V+I ++ AR I
Sbjct: 61 QALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEI 102
>gnl|CDD|39190 KOG3987, KOG3987, KOG3987, Uncharacterized conserved protein
DREV/CGI-81 [Function unknown].
Length = 288
Score = 26.9 bits (59), Expect = 9.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIA 240
LL+L G+G +L +A F+ V A E++
Sbjct: 116 LLDLGAGDGEITLRMAPTFEEVYATELS 143
>gnl|CDD|147424 pfam05219, DREV, DREV methyltransferase. This family contains DREV
protein homologues from several eukaryotes. The function
of this protein is unknown. However, these proteins
appear to be related to other methyltransferases
(Bateman A pers obs).
Length = 265
Score = 26.8 bits (59), Expect = 9.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 213 LLELYCGNGNFSLVLARHFDRVLAVEIA 240
LL+L G+G +L +A F+ V A E++
Sbjct: 98 LLDLGAGDGEITLRMAPTFEEVYATELS 125
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.327 0.139 0.418
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,622,670
Number of extensions: 248640
Number of successful extensions: 758
Number of sequences better than 10.0: 1
Number of HSP's gapped: 741
Number of HSP's successfully gapped: 43
Length of query: 371
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 276
Effective length of database: 4,210,882
Effective search space: 1162203432
Effective search space used: 1162203432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.3 bits)