RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781001|ref|YP_003065414.1| hypothetical protein
CLIBASIA_04510 [Candidatus Liberibacter asiaticus str. psy62]
         (93 letters)



>gnl|CDD|183037 PRK11202, PRK11202, DNA-binding transcriptional repressor FabR;
           Provisional.
          Length = 203

 Score = 28.8 bits (65), Expect = 0.35
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 12/74 (16%)

Query: 8   LSDYLKIEHYMLHSFIEGPTKAIVIIWLSIFSMPSGS------IEYRDTLDERVANSGLY 61
           L+DYL++E++M   F E   +A+V I   +FS  +G+       E R  L+ER+    L 
Sbjct: 136 LADYLELENHMPREFAEAQAEAMVTI---VFS--AGAEALDVDREQRRQLEERLV-LQLR 189

Query: 62  MIVKKALVRSKKRK 75
           MI K A        
Sbjct: 190 MIAKGAYAIIPGNV 203


>gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed.
          Length = 763

 Score = 27.2 bits (61), Expect = 1.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 47  YRDTLDERVANSGLYMIVKKALVRSKKRKIA 77
           YR+ L++ V +SGL M    A  ++  +++ 
Sbjct: 421 YREQLNQFVYHSGLIMKPVFAAAKAAPKRVV 451


>gnl|CDD|180898 PRK07232, PRK07232, bifunctional malic enzyme
           oxidoreductase/phosphotransacetylase; Reviewed.
          Length = 752

 Score = 25.4 bits (57), Expect = 3.1
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 4/34 (11%)

Query: 46  EYRDTLDERVANSGLYM--IVKKALVRSKKRKIA 77
            YR+ L+  V  +GL M  I  KA  +   +++ 
Sbjct: 412 AYREKLEAFVYKTGLVMKPIFAKA--KKDPKRVV 443


>gnl|CDD|178428 PLN02834, PLN02834, 3-dehydroquinate synthase.
          Length = 433

 Score = 25.5 bits (56), Expect = 3.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 49  DTLDERVANSGLYMIVKKALVRSKK 73
            TL +R   SG+  +VK  L+R  +
Sbjct: 239 ATLPDRELASGIAEVVKYGLIRDAE 263


>gnl|CDD|180538 PRK06349, PRK06349, homoserine dehydrogenase; Provisional.
          Length = 426

 Score = 23.9 bits (53), Expect = 9.1
 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%)

Query: 64 VKKALVR--SKKRKIAVPSRQVTD 85
          +KK  VR   K R + +P   +T 
Sbjct: 39 IKKVAVRDLEKDRGVDLPGILLTT 62


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.320    0.135    0.380 

Gapped
Lambda     K      H
   0.267   0.0789    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,473,816
Number of extensions: 79463
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 9
Length of query: 93
Length of database: 5,994,473
Length adjustment: 61
Effective length of query: 32
Effective length of database: 4,676,385
Effective search space: 149644320
Effective search space used: 149644320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (22.9 bits)