RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781001|ref|YP_003065414.1| hypothetical protein CLIBASIA_04510 [Candidatus Liberibacter asiaticus str. psy62] (93 letters) >gnl|CDD|183037 PRK11202, PRK11202, DNA-binding transcriptional repressor FabR; Provisional. Length = 203 Score = 28.8 bits (65), Expect = 0.35 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 12/74 (16%) Query: 8 LSDYLKIEHYMLHSFIEGPTKAIVIIWLSIFSMPSGS------IEYRDTLDERVANSGLY 61 L+DYL++E++M F E +A+V I +FS +G+ E R L+ER+ L Sbjct: 136 LADYLELENHMPREFAEAQAEAMVTI---VFS--AGAEALDVDREQRRQLEERLV-LQLR 189 Query: 62 MIVKKALVRSKKRK 75 MI K A Sbjct: 190 MIAKGAYAIIPGNV 203 >gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed. Length = 763 Score = 27.2 bits (61), Expect = 1.0 Identities = 9/31 (29%), Positives = 18/31 (58%) Query: 47 YRDTLDERVANSGLYMIVKKALVRSKKRKIA 77 YR+ L++ V +SGL M A ++ +++ Sbjct: 421 YREQLNQFVYHSGLIMKPVFAAAKAAPKRVV 451 >gnl|CDD|180898 PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed. Length = 752 Score = 25.4 bits (57), Expect = 3.1 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 4/34 (11%) Query: 46 EYRDTLDERVANSGLYM--IVKKALVRSKKRKIA 77 YR+ L+ V +GL M I KA + +++ Sbjct: 412 AYREKLEAFVYKTGLVMKPIFAKA--KKDPKRVV 443 >gnl|CDD|178428 PLN02834, PLN02834, 3-dehydroquinate synthase. Length = 433 Score = 25.5 bits (56), Expect = 3.1 Identities = 9/25 (36%), Positives = 14/25 (56%) Query: 49 DTLDERVANSGLYMIVKKALVRSKK 73 TL +R SG+ +VK L+R + Sbjct: 239 ATLPDRELASGIAEVVKYGLIRDAE 263 >gnl|CDD|180538 PRK06349, PRK06349, homoserine dehydrogenase; Provisional. Length = 426 Score = 23.9 bits (53), Expect = 9.1 Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 2/24 (8%) Query: 64 VKKALVR--SKKRKIAVPSRQVTD 85 +KK VR K R + +P +T Sbjct: 39 IKKVAVRDLEKDRGVDLPGILLTT 62 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.135 0.380 Gapped Lambda K H 0.267 0.0789 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 1,473,816 Number of extensions: 79463 Number of successful extensions: 119 Number of sequences better than 10.0: 1 Number of HSP's gapped: 119 Number of HSP's successfully gapped: 9 Length of query: 93 Length of database: 5,994,473 Length adjustment: 61 Effective length of query: 32 Effective length of database: 4,676,385 Effective search space: 149644320 Effective search space used: 149644320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (22.9 bits)